Query 017559
Match_columns 369
No_of_seqs 244 out of 3819
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 1.6E-29 5.3E-34 245.4 14.2 265 35-303 198-523 (636)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-28 4.7E-33 244.0 19.7 249 41-289 395-721 (768)
3 4eco_A Uncharacterized protein 100.0 4E-29 1.4E-33 242.6 13.7 238 18-258 248-543 (636)
4 3rgz_A Protein brassinosteroid 100.0 3.5E-28 1.2E-32 241.1 20.3 269 18-286 393-741 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 2.3E-28 7.8E-33 241.9 18.0 264 35-303 440-763 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 4.7E-27 1.6E-31 219.6 23.4 272 7-282 20-381 (455)
7 4fmz_A Internalin; leucine ric 100.0 6.5E-27 2.2E-31 210.9 23.3 270 3-288 51-326 (347)
8 4fmz_A Internalin; leucine ric 100.0 3.3E-27 1.1E-31 212.8 20.7 302 10-328 35-343 (347)
9 2id5_A Lingo-1, leucine rich r 100.0 9.9E-28 3.4E-32 225.6 17.8 253 7-261 21-282 (477)
10 2ft3_A Biglycan; proteoglycan, 100.0 7.9E-27 2.7E-31 209.0 22.3 272 5-284 12-306 (332)
11 2id5_A Lingo-1, leucine rich r 100.0 8.4E-27 2.9E-31 219.2 23.1 278 3-283 39-331 (477)
12 4ecn_A Leucine-rich repeat pro 100.0 8.3E-28 2.8E-32 238.0 16.8 245 12-261 481-763 (876)
13 1xku_A Decorin; proteoglycan, 100.0 2.1E-26 7.2E-31 206.1 23.5 257 20-283 32-304 (330)
14 3o6n_A APL1; leucine-rich repe 99.9 1.1E-26 3.9E-31 212.6 21.7 258 17-282 43-328 (390)
15 2z7x_B TOLL-like receptor 1, v 99.9 7.3E-27 2.5E-31 222.0 20.6 137 2-147 6-150 (520)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-27 5.7E-32 227.9 16.0 146 8-155 16-168 (549)
17 2z81_A CD282 antigen, TOLL-lik 99.9 5.5E-27 1.9E-31 224.3 18.2 328 2-333 32-512 (549)
18 3t6q_A CD180 antigen; protein- 99.9 1.3E-26 4.6E-31 224.3 21.0 319 8-329 23-436 (606)
19 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-27 9.7E-32 209.9 14.7 247 40-287 50-306 (313)
20 1ogq_A PGIP-2, polygalacturona 99.9 1E-27 3.4E-32 212.9 11.5 247 19-267 50-307 (313)
21 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-26 4E-31 216.2 18.8 268 17-306 40-320 (457)
22 3t6q_A CD180 antigen; protein- 99.9 5.1E-26 1.8E-30 220.2 23.2 251 9-261 45-386 (606)
23 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.3E-31 207.0 17.0 218 41-261 82-311 (328)
24 3oja_B Anopheles plasmodium-re 99.9 5.3E-26 1.8E-30 219.3 22.2 264 17-283 49-356 (597)
25 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-26 9.5E-31 213.7 19.5 284 2-306 48-341 (457)
26 3v47_A TOLL-like receptor 5B a 99.9 8.1E-26 2.8E-30 211.2 22.5 281 2-284 36-407 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4.1E-30 215.5 22.6 316 8-333 42-512 (562)
28 1o6v_A Internalin A; bacterial 99.9 9.3E-26 3.2E-30 211.4 21.0 260 8-282 57-341 (466)
29 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-26 1.7E-30 216.3 19.3 94 2-99 27-127 (520)
30 3vq2_A TLR4, TOLL-like recepto 99.9 7.4E-26 2.5E-30 219.1 20.4 138 8-147 22-165 (606)
31 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-25 6.1E-30 219.3 22.1 212 105-318 399-635 (680)
32 1xku_A Decorin; proteoglycan, 99.9 8.4E-25 2.9E-29 195.7 24.6 267 8-282 42-329 (330)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.2E-25 1.8E-29 211.1 23.6 95 2-100 58-159 (562)
34 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-25 7.6E-30 223.2 21.3 136 8-146 15-159 (844)
35 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-25 4.8E-30 217.1 19.0 266 12-284 278-557 (606)
36 3zyj_A Leucine-rich repeat-con 99.9 6.2E-25 2.1E-29 204.3 22.6 240 21-262 45-290 (440)
37 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 199.8 17.0 209 62-273 80-299 (328)
38 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-24 3.9E-29 195.0 22.4 267 8-283 44-331 (332)
39 2z63_A TOLL-like receptor 4, v 99.9 1E-25 3.4E-30 216.5 16.0 136 9-145 40-187 (570)
40 3zyi_A Leucine-rich repeat-con 99.9 8.5E-25 2.9E-29 204.0 21.8 240 21-262 56-301 (452)
41 3o6n_A APL1; leucine-rich repe 99.9 2E-25 6.8E-30 204.4 17.0 266 9-283 57-350 (390)
42 1o6v_A Internalin A; bacterial 99.9 2.4E-24 8.3E-29 201.7 23.1 267 2-283 74-364 (466)
43 2z66_A Variable lymphocyte rec 99.9 7E-25 2.4E-29 194.1 18.0 239 22-262 10-259 (306)
44 2z80_A TOLL-like receptor 2, v 99.9 7.4E-25 2.5E-29 197.9 18.3 279 17-302 29-327 (353)
45 2z63_A TOLL-like receptor 4, v 99.9 1E-24 3.5E-29 209.5 19.9 141 7-149 17-163 (570)
46 1jl5_A Outer protein YOPM; leu 99.9 3.8E-24 1.3E-28 199.1 22.7 266 9-301 83-365 (454)
47 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-24 7.5E-29 216.0 22.4 294 3-300 31-388 (844)
48 1ozn_A Reticulon 4 receptor; N 99.9 8.3E-25 2.8E-29 191.6 16.6 217 22-261 14-235 (285)
49 3oja_B Anopheles plasmodium-re 99.9 1.3E-24 4.3E-29 209.7 17.7 249 9-262 63-356 (597)
50 2z80_A TOLL-like receptor 2, v 99.9 7.6E-25 2.6E-29 197.8 14.2 253 7-262 41-312 (353)
51 1ziw_A TOLL-like receptor 3; i 99.9 5.3E-24 1.8E-28 208.8 21.2 139 9-148 37-184 (680)
52 1jl5_A Outer protein YOPM; leu 99.9 6.8E-23 2.3E-27 190.6 25.5 250 8-283 102-368 (454)
53 2z66_A Variable lymphocyte rec 99.9 3.5E-24 1.2E-28 189.6 15.4 232 7-241 17-261 (306)
54 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-23 1E-27 181.7 20.8 216 43-284 14-237 (285)
55 1wwl_A Monocyte differentiatio 99.9 9.5E-26 3.2E-30 200.1 2.6 240 17-262 41-307 (312)
56 3zyj_A Leucine-rich repeat-con 99.9 8.4E-23 2.9E-27 189.9 21.7 239 41-283 44-290 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 7.9E-23 2.7E-27 190.7 20.3 239 41-283 55-301 (452)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-24 8.7E-29 191.3 8.0 239 17-266 32-277 (317)
59 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-22 1.3E-26 193.9 23.3 136 8-145 42-183 (635)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-21 4.8E-26 187.5 24.4 243 7-283 50-295 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-23 9.9E-28 184.5 10.3 264 41-333 35-301 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-21 1.3E-25 184.4 23.8 237 19-289 40-277 (622)
63 2z62_A TOLL-like receptor 4, v 99.9 8.9E-22 3.1E-26 171.4 17.0 214 24-262 12-235 (276)
64 2z62_A TOLL-like receptor 4, v 99.9 1.3E-21 4.3E-26 170.5 17.4 212 8-241 18-237 (276)
65 3oja_A Leucine-rich immune mol 99.9 5.7E-23 1.9E-27 193.0 8.7 231 18-259 33-270 (487)
66 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-21 4.9E-26 189.8 18.7 149 22-171 34-185 (635)
67 1wwl_A Monocyte differentiatio 99.9 1.6E-23 5.3E-28 185.8 3.8 235 41-282 44-306 (312)
68 2o6q_A Variable lymphocyte rec 99.9 2.3E-20 7.9E-25 161.9 19.7 76 21-97 18-95 (270)
69 2o6q_A Variable lymphocyte rec 99.9 2.6E-20 8.9E-25 161.6 19.9 199 41-241 17-218 (270)
70 3oja_A Leucine-rich immune mol 99.9 1.4E-21 4.8E-26 183.5 12.6 211 41-262 35-248 (487)
71 1z7x_W Ribonuclease inhibitor; 99.8 6E-24 2E-28 198.9 -6.3 221 41-261 86-351 (461)
72 4glp_A Monocyte differentiatio 99.8 7E-21 2.4E-25 168.6 13.0 219 41-262 65-305 (310)
73 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.7E-25 160.9 13.4 206 32-262 23-237 (239)
74 1p9a_G Platelet glycoprotein I 99.8 8.7E-20 3E-24 159.8 18.7 193 41-262 11-206 (290)
75 2xwt_C Thyrotropin receptor; s 99.8 2.4E-20 8.4E-25 158.8 13.3 202 6-238 20-236 (239)
76 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.2E-24 157.7 18.9 197 17-241 8-208 (290)
77 3rfs_A Internalin B, repeat mo 99.8 1.1E-20 3.7E-25 164.1 10.4 200 61-270 39-241 (272)
78 1z7x_W Ribonuclease inhibitor; 99.8 6.3E-22 2.2E-26 185.1 2.6 322 17-343 26-422 (461)
79 3rfs_A Internalin B, repeat mo 99.8 4.1E-20 1.4E-24 160.5 13.0 225 18-252 18-247 (272)
80 1h6u_A Internalin H; cell adhe 99.8 1.6E-19 5.5E-24 159.5 15.9 193 62-267 40-232 (308)
81 2ca6_A RAN GTPase-activating p 99.8 1.1E-21 3.8E-26 179.2 1.3 222 41-262 33-314 (386)
82 2ast_B S-phase kinase-associat 99.8 3.6E-21 1.2E-25 172.4 4.6 219 20-238 48-282 (336)
83 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.2E-24 159.2 14.8 193 41-245 42-234 (308)
84 4ay9_X Follicle-stimulating ho 99.8 2.2E-19 7.7E-24 161.6 15.3 236 22-261 12-256 (350)
85 4glp_A Monocyte differentiatio 99.8 8.4E-20 2.9E-24 161.6 11.6 220 18-242 63-308 (310)
86 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.4E-26 175.4 -0.1 235 41-280 48-301 (336)
87 2ca6_A RAN GTPase-activating p 99.8 3.7E-21 1.3E-25 175.7 -0.7 242 41-283 10-314 (386)
88 3goz_A Leucine-rich repeat-con 99.8 1.2E-20 4.2E-25 170.7 1.8 238 24-261 3-294 (362)
89 3ogk_B Coronatine-insensitive 99.8 6.9E-22 2.3E-26 190.7 -7.2 176 17-193 110-304 (592)
90 3m19_A Variable lymphocyte rec 99.8 4.5E-18 1.5E-22 145.8 16.7 83 159-241 107-192 (251)
91 3m19_A Variable lymphocyte rec 99.8 8.8E-18 3E-22 144.0 16.6 174 20-218 15-192 (251)
92 4ay9_X Follicle-stimulating ho 99.8 6.4E-18 2.2E-22 152.1 15.0 233 43-280 12-254 (350)
93 3ogk_B Coronatine-insensitive 99.8 9.5E-22 3.2E-26 189.7 -10.9 148 21-170 140-304 (592)
94 3goz_A Leucine-rich repeat-con 99.8 2E-19 6.9E-24 162.7 4.2 240 44-283 2-295 (362)
95 2p1m_B Transport inhibitor res 99.7 2.5E-20 8.5E-25 179.9 -6.8 218 17-235 64-345 (594)
96 2p1m_B Transport inhibitor res 99.7 4.6E-20 1.6E-24 178.0 -5.6 196 17-212 103-345 (594)
97 3cvr_A Invasion plasmid antige 99.7 4.6E-17 1.6E-21 154.4 14.9 183 41-247 60-250 (571)
98 1h6t_A Internalin B; cell adhe 99.7 5.3E-17 1.8E-21 142.1 13.5 167 61-261 44-210 (291)
99 3cvr_A Invasion plasmid antige 99.7 1.5E-16 5.1E-21 150.9 17.1 178 64-265 60-244 (571)
100 2o6s_A Variable lymphocyte rec 99.7 2.2E-16 7.5E-21 131.2 13.4 67 179-251 121-189 (208)
101 1h6t_A Internalin B; cell adhe 99.7 2.1E-16 7.3E-21 138.3 13.6 170 41-221 47-216 (291)
102 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.2E-21 131.5 10.7 148 41-193 45-192 (197)
103 2o6s_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 130.0 12.6 175 23-228 11-189 (208)
104 1dce_A Protein (RAB geranylger 99.7 6.4E-18 2.2E-22 160.9 1.1 182 60-261 346-543 (567)
105 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-15 4.7E-20 127.4 13.3 149 22-171 14-165 (220)
106 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.4E-20 145.3 15.4 191 41-243 22-212 (605)
107 2v9t_B SLIT homolog 2 protein 99.6 1.8E-15 6.2E-20 126.7 13.8 124 22-146 14-139 (220)
108 1m9s_A Internalin B; cell inva 99.6 5.3E-16 1.8E-20 148.6 11.8 193 17-221 19-213 (605)
109 4ezg_A Putative uncharacterize 99.6 3.6E-16 1.2E-20 128.7 8.8 152 84-241 41-194 (197)
110 1dce_A Protein (RAB geranylger 99.6 8.6E-18 2.9E-22 160.0 -2.7 185 84-289 346-549 (567)
111 2xot_A Amphoterin-induced prot 99.6 1.9E-15 6.4E-20 136.5 12.2 170 22-193 21-200 (361)
112 2v9t_B SLIT homolog 2 protein 99.6 4.6E-15 1.6E-19 124.2 13.5 150 43-217 14-164 (220)
113 1xeu_A Internalin C; cellular 99.6 6.1E-16 2.1E-20 133.3 8.0 163 64-261 20-182 (263)
114 2xot_A Amphoterin-induced prot 99.6 1.9E-15 6.4E-20 136.5 10.6 174 42-217 20-201 (361)
115 1xeu_A Internalin C; cellular 99.6 2.7E-15 9.3E-20 129.2 10.3 165 109-283 17-183 (263)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-14 3.5E-19 122.1 13.4 151 43-218 14-166 (220)
117 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 121.9 14.3 130 63-193 40-170 (229)
118 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 122.6 13.4 150 66-218 22-172 (229)
119 2ell_A Acidic leucine-rich nuc 99.6 7.3E-15 2.5E-19 117.6 9.3 131 135-267 24-162 (168)
120 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 114.0 6.9 125 134-259 16-148 (149)
121 2ell_A Acidic leucine-rich nuc 99.5 1.8E-14 6.1E-19 115.4 8.0 134 86-245 23-164 (168)
122 1w8a_A SLIT protein; signaling 99.5 1.7E-13 5.8E-18 112.1 11.0 127 22-149 11-140 (192)
123 2wfh_A SLIT homolog 2 protein 99.5 2.9E-13 9.8E-18 110.8 12.1 125 22-147 13-138 (193)
124 4b8c_D Glucose-repressible alc 99.5 4.3E-14 1.5E-18 138.6 6.7 153 126-282 215-369 (727)
125 2je0_A Acidic leucine-rich nuc 99.5 3.3E-13 1.1E-17 105.6 10.3 124 18-143 16-148 (149)
126 4b8c_D Glucose-repressible alc 99.4 2E-14 6.8E-19 141.0 2.9 113 56-172 217-329 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.6E-18 111.1 6.5 128 132-262 16-151 (176)
128 1w8a_A SLIT protein; signaling 99.4 8.4E-13 2.9E-17 108.0 10.2 128 43-172 11-139 (192)
129 3sb4_A Hypothetical leucine ri 99.4 3.9E-13 1.3E-17 119.7 8.6 85 181-268 225-313 (329)
130 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.7E-17 105.1 9.8 130 13-146 13-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.4 4.5E-12 1.6E-16 103.6 11.2 100 43-145 13-112 (193)
132 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 99.8 12.6 127 21-148 9-137 (177)
133 3sb4_A Hypothetical leucine ri 99.3 4.4E-12 1.5E-16 112.9 10.7 227 41-279 26-304 (329)
134 4fdw_A Leucine rich hypothetic 99.3 1.3E-10 4.6E-15 105.8 20.2 228 19-261 113-355 (401)
135 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 99.4 11.5 128 42-172 9-137 (177)
136 1ds9_A Outer arm dynein; leuci 99.3 1.3E-14 4.4E-19 119.5 -7.3 100 157-257 68-180 (198)
137 4fdw_A Leucine rich hypothetic 99.2 1E-09 3.6E-14 99.9 20.8 226 41-282 114-355 (401)
138 1ds9_A Outer arm dynein; leuci 99.2 1.2E-13 4E-18 113.7 -7.9 112 149-262 38-151 (198)
139 2r9u_A Variable lymphocyte rec 99.2 1.7E-10 5.7E-15 92.5 10.6 99 162-262 15-116 (174)
140 3g39_A Variable lymphocyte rec 99.2 1.4E-10 4.7E-15 92.7 10.0 102 21-123 11-114 (170)
141 2r9u_A Variable lymphocyte rec 99.1 2.7E-10 9.3E-15 91.3 10.1 100 22-122 15-116 (174)
142 3g39_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 90.6 9.7 105 41-147 10-114 (170)
143 3un9_A NLR family member X1; l 98.9 2.4E-11 8.1E-16 109.7 -4.2 61 86-146 71-137 (372)
144 4fs7_A Uncharacterized protein 98.9 8.1E-09 2.8E-13 94.1 11.8 61 9-72 59-126 (394)
145 3un9_A NLR family member X1; l 98.9 6.3E-11 2.1E-15 106.9 -2.7 161 62-241 71-252 (372)
146 2ifg_A High affinity nerve gro 98.8 9.3E-09 3.2E-13 92.0 9.2 102 139-241 12-116 (347)
147 4fs7_A Uncharacterized protein 98.8 2.5E-07 8.4E-12 84.2 18.0 57 201-259 293-351 (394)
148 2ifg_A High affinity nerve gro 98.8 2.1E-08 7.3E-13 89.6 9.5 100 23-124 12-116 (347)
149 4gt6_A Cell surface protein; l 98.8 8.2E-07 2.8E-11 80.8 19.5 81 177-259 260-342 (394)
150 2ra8_A Uncharacterized protein 98.7 1.4E-08 4.7E-13 90.9 5.9 132 127-261 164-317 (362)
151 4gt6_A Cell surface protein; l 98.6 3.7E-06 1.3E-10 76.4 19.8 60 200-260 260-320 (394)
152 2ra8_A Uncharacterized protein 98.6 7.2E-09 2.5E-13 92.7 1.7 181 60-262 136-341 (362)
153 4h09_A Hypothetical leucine ri 98.6 8E-06 2.7E-10 73.7 20.0 102 156-259 214-318 (379)
154 3e4g_A ATP synthase subunit S, 98.5 8E-09 2.7E-13 81.6 -1.6 86 229-335 62-156 (176)
155 4h09_A Hypothetical leucine ri 98.5 1.3E-05 4.5E-10 72.3 18.6 242 8-260 56-342 (379)
156 3e4g_A ATP synthase subunit S, 98.4 2.4E-07 8.2E-12 73.2 5.6 87 64-150 62-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.2 2E-07 6.9E-12 75.2 -0.3 83 179-261 62-161 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 1.9E-06 6.4E-11 69.5 5.4 105 41-145 37-161 (185)
159 3rw6_A Nuclear RNA export fact 97.8 5.6E-06 1.9E-10 70.3 1.4 78 180-258 168-258 (267)
160 3rw6_A Nuclear RNA export fact 97.7 6.5E-05 2.2E-09 63.7 7.2 36 86-121 169-206 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0021 7.2E-08 51.5 5.3 104 41-144 42-166 (197)
162 3rfe_A Platelet glycoprotein I 96.3 0.0061 2.1E-07 45.5 5.4 52 23-75 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.3 0.00063 2.2E-08 54.6 -0.1 35 204-238 97-136 (197)
164 3rfe_A Platelet glycoprotein I 96.1 0.013 4.6E-07 43.6 6.3 52 209-262 12-66 (130)
165 2lz0_A Uncharacterized protein 49.7 17 0.00058 25.0 3.6 38 58-96 15-52 (100)
166 2lz0_A Uncharacterized protein 40.7 29 0.001 23.8 3.7 13 178-190 16-28 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.6e-29 Score=245.42 Aligned_cols=265 Identities=19% Similarity=0.245 Sum_probs=203.4
Q ss_pred cCCccC---CeeEEEcCCccccc------------------cCcccC--CCCCCCEEeCcCcccccccchhhccCCcCcE
Q 017559 35 FPRISG---NVVELNLMCTPIEE------------------VPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 35 ~~~~~~---~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (369)
+|..++ +|++|+++++.++. +|..++ .+++|++|++++|...+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 555444 88999998888887 888888 8999999999998888888888888999999
Q ss_pred EecCCCc-Ccc-cCchhhhcc------Cccceecccccccccccch--hhhcccCCCeEeecCCCCCCCCCcccCCCcch
Q 017559 92 LDLSYCI-NLE-SFPEILEKM------ELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161 (369)
Q Consensus 92 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (369)
|++++|. ... .+|..++.+ ++|++|++++|... .+|. .+.++++|+.|++++|...+.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999986 554 678777776 89999999977655 7777 78889999999999876655777 78888899
Q ss_pred hhhccCcccCCCCCccccCCCC-CcEEEeccCCCcCCCcccCCCC--CCcEEeccCCCCcc-CCCCCC-------CCCCC
Q 017559 162 ERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLS--SLKKLELGDCEIME-IPPDIG-------CLSSL 230 (369)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~~~-------~~~~L 230 (369)
++|++++|.+..+|..+..+++ |++|++++|....+|..+...+ +|+.|++++|.+.+ .|..+. .+++|
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 9999999988888888888888 9999999998778887666544 78888888888877 555555 66788
Q ss_pred CEEEcCCCCCCccchhh-ccCCCCCEeccccccccccCCCc-Cc----------ccceecccCCcccccCCC-----chh
Q 017559 231 ESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPEL-PL----------LLVMLGASDCKRLQFLPE-----LTS 293 (369)
Q Consensus 231 ~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~-~~----------~L~~L~l~~c~~L~~l~~-----~~~ 293 (369)
++|++++|.++.+|..+ ..+++|++|++++| .++.+|.. +. +|+.|+++++. +..++. ..+
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLP 513 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCC
Confidence 88888888888777654 45788888888887 45566542 11 67788777663 334442 234
Q ss_pred hhHHhhHHHH
Q 017559 294 CLEELDASIL 303 (369)
Q Consensus 294 ~l~~l~~~~~ 303 (369)
+|+.|++..+
T Consensus 514 ~L~~L~Ls~N 523 (636)
T 4eco_A 514 YLVGIDLSYN 523 (636)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEECCCC
Confidence 5555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.4e-28 Score=243.99 Aligned_cols=249 Identities=24% Similarity=0.300 Sum_probs=162.6
Q ss_pred CeeEEEcCCcccc-ccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceeccc
Q 017559 41 NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 41 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 119 (369)
+|++|+++++.++ .+|..+..+++|++|++++|.....+|..+.++++|++|++++|.....+|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 4566666555555 455556666667777776666555666666666777777777666655666666677777777777
Q ss_pred ccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC-CCCccccCCCCCcEEEeccCCC-cCC
Q 017559 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVL 197 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~-~~~ 197 (369)
+|...+.+|..+.++++|+.|++++|...+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.. +.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 66655566666667777777777776666666666677777777777777666 5566666777777777776652 122
Q ss_pred Cc----------------------------------------------------------------------ccCCCCCC
Q 017559 198 PP----------------------------------------------------------------------LLSGLSSL 207 (369)
Q Consensus 198 ~~----------------------------------------------------------------------~~~~~~~L 207 (369)
|. .+..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 22 22334567
Q ss_pred cEEeccCCCCcc-CCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCCCCEeccccccccccCCCc---CcccceecccCC
Q 017559 208 KKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDC 282 (369)
Q Consensus 208 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c 282 (369)
+.|++++|.+.+ +|..++.++.|+.|++++|.++ .+|..++.+++|+.|++++|.--..+|.. ..+|++|+++++
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 777777777765 6666777777777777777777 67777777777777777777433355543 355777777776
Q ss_pred cccccCC
Q 017559 283 KRLQFLP 289 (369)
Q Consensus 283 ~~L~~l~ 289 (369)
+--..+|
T Consensus 715 ~l~g~iP 721 (768)
T 3rgz_A 715 NLSGPIP 721 (768)
T ss_dssp EEEEECC
T ss_pred cccccCC
Confidence 5444444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4e-29 Score=242.59 Aligned_cols=238 Identities=17% Similarity=0.234 Sum_probs=112.8
Q ss_pred CCCccEEecCCCCCccccCCccC---CeeEEEcCCcc-cc--ccCcccCCC------CCCCEEeCcCcccccccch--hh
Q 017559 18 FISSIKIDCYKCVNLREFPRISG---NVVELNLMCTP-IE--EVPLSIECL------PNLETLEMSFCNSLKRLST--SI 83 (369)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~-~~--~l~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~ 83 (369)
+++|++|++++|.....+|..+. +|++|+++++. ++ .+|..++.+ ++|++|++++|... .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 55555555555554444554333 55555555554 44 244443333 55555555554443 4444 45
Q ss_pred ccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccC-CCeEeecC------------------
Q 017559 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEG-LKQLKLTG------------------ 144 (369)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~------------------ 144 (369)
+++++|++|++++|.....+| .+..+++|++|++++|... .+|..+..+++ |+.|++++
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 555555555555544433444 4455555555555544322 44444555555 55555555
Q ss_pred -------CCCCCCCCcccC-------CCcchhhhccCcccCCCCCccc-cCCCCCcEEEeccCCCcCCCcccCC------
Q 017559 145 -------CTKLGSLPESLG-------NLKSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLVLPPLLSG------ 203 (369)
Q Consensus 145 -------~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~------ 203 (369)
|...+..|..+. .+++|+.|++++|.+..+|..+ ..+++|++|++++|....+|.....
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 433333333333 3344444444444444444332 2244455555554444444432111
Q ss_pred --CCCCcEEeccCCCCccCCCCCC--CCCCCCEEEcCCCCCCccchhhccCCCCCEecc
Q 017559 204 --LSSLKKLELGDCEIMEIPPDIG--CLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258 (369)
Q Consensus 204 --~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 258 (369)
+++|+.|++++|.+..+|..+. .+++|++|++++|.++.+|..+..+++|++|++
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 1145555555555544444443 445555555555555444444445555555555
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.5e-28 Score=241.05 Aligned_cols=269 Identities=22% Similarity=0.249 Sum_probs=220.9
Q ss_pred CCCccEEecCCCCCccccCCccC---CeeEEEcCCcccc-ccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEe
Q 017559 18 FISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD 93 (369)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 93 (369)
+++|++|++++|.....+|..+. +|++|++++|.++ .+|..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 66788888888874446666554 8899999888887 6677788888999999998887778888888889999999
Q ss_pred cCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC-
Q 017559 94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP- 172 (369)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 172 (369)
+++|.....+|..+..+++|++|++++|...+.+|.++..+++|+.|++++|...+.+|..+..+++|+.|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9988777778888888999999999988877788888888899999999888777788888888888888888888664
Q ss_pred CCCc----------------------------------------------------------------------cccCCC
Q 017559 173 QAPS----------------------------------------------------------------------SIVDLN 182 (369)
Q Consensus 173 ~~~~----------------------------------------------------------------------~~~~~~ 182 (369)
.+|. .+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 3332 234467
Q ss_pred CCcEEEeccCCC-cCCCcccCCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCCCCEeccc
Q 017559 183 KLETLSLFECRG-LVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLV 259 (369)
Q Consensus 183 ~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~ 259 (369)
+|+.|++++|.. +.+|..++.+++|+.|++++|.+.+ +|..++.+++|+.||+++|+++ .+|..+..+++|++|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 899999999994 4788899999999999999999996 8888999999999999999999 889999999999999999
Q ss_pred cccccccCCCc--CcccceecccCCcccc
Q 017559 260 NCVKLQSLPEL--PLLLVMLGASDCKRLQ 286 (369)
Q Consensus 260 ~~~~l~~~~~~--~~~L~~L~l~~c~~L~ 286 (369)
+|.--..+|.. +.++....+.+++.|-
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhc
Confidence 99655666653 3445555566665543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.3e-28 Score=241.95 Aligned_cols=264 Identities=17% Similarity=0.220 Sum_probs=195.3
Q ss_pred cCCccC---CeeEEEcCCccccc------------------cCcccC--CCCCCCEEeCcCcccccccchhhccCCcCcE
Q 017559 35 FPRISG---NVVELNLMCTPIEE------------------VPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 35 ~~~~~~---~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (369)
+|..++ +|+.|++++|.++. +|..++ .+++|++|++++|.....+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 555443 88899998888887 888777 8899999999988888888888888999999
Q ss_pred EecCCCc-Ccc-cCchhhhccC-------ccceecccccccccccch--hhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 92 LDLSYCI-NLE-SFPEILEKME-------LLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 92 L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
|++++|. ... .+|..+..++ +|++|++++|... .+|. .+.++++|+.|++++|... .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999886 444 5777676665 8999999877655 7777 7888999999999886654 777 7888899
Q ss_pred hhhhccCcccCCCCCccccCCCC-CcEEEeccCCCcCCCcccCCCCC--CcEEeccCCCCccCCC----CCC--CCCCCC
Q 017559 161 LERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLSS--LKKLELGDCEIMEIPP----DIG--CLSSLE 231 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~----~~~--~~~~L~ 231 (369)
|+.|++++|.+..+|..+..+++ |+.|++++|....+|..+...+. |+.|++++|.+.+... .+. ..++|+
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 99999999988888888888888 99999999887788876665543 8888888888766322 122 334778
Q ss_pred EEEcCCCCCCccchhh-ccCCCCCEeccccccccccCCCcC-----------cccceecccCCcccccCCCc-----hhh
Q 017559 232 SLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP-----------LLLVMLGASDCKRLQFLPEL-----TSC 294 (369)
Q Consensus 232 ~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-----------~~L~~L~l~~c~~L~~l~~~-----~~~ 294 (369)
+|++++|.++.+|..+ ..+++|+.|++++| .++.+|... ++|+.|++++| ++..++.. .++
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPY 754 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCC
Confidence 8888888777777655 36777888888777 555655421 16777777766 44444422 245
Q ss_pred hHHhhHHHH
Q 017559 295 LEELDASIL 303 (369)
Q Consensus 295 l~~l~~~~~ 303 (369)
|+.|++..+
T Consensus 755 L~~L~Ls~N 763 (876)
T 4ecn_A 755 LSNMDVSYN 763 (876)
T ss_dssp CCEEECCSS
T ss_pred cCEEEeCCC
Confidence 555555443
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.7e-27 Score=219.63 Aligned_cols=272 Identities=19% Similarity=0.165 Sum_probs=175.8
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCcccc-cc-CcccCCCCCCCEEeCcCcccccccc
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIE-EV-PLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~ 80 (369)
.+++.+|. -.++|++|++++|. +..+ +..+. +|++|+++++.+. .+ +..+..+++|++|++++|......|
T Consensus 20 ~~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 20 RGLHQVPE--LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SCCSSCCC--CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCcccCCC--CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 45667777 34778888888887 5554 44443 8888888887775 44 3467888888888888877766667
Q ss_pred hhhccCCcCcEEecCCCcCcccCchh--hhccCccceecccccccccccchh-hhcccCCCeEeecCCCCCCCCCcccC-
Q 017559 81 TSICKLKSLRSLDLSYCINLESFPEI--LEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGSLPESLG- 156 (369)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~- 156 (369)
..++++++|++|++++|......+.. +..+++|++|++++|...+..|.. +.++++|+.|++++|......+..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 77888888888888887665544433 778888888888877655554544 67788888888888665444333332
Q ss_pred ---------------------------------CCcchhhhccCcccCCCC-Ccc-------------------------
Q 017559 157 ---------------------------------NLKSLERLHAGLLAIPQA-PSS------------------------- 177 (369)
Q Consensus 157 ---------------------------------~l~~L~~L~l~~~~~~~~-~~~------------------------- 177 (369)
.+++|++|++++|.+... +..
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 235666666666654310 000
Q ss_pred ------------cc--CCCCCcEEEeccCCCcC-CCcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCC
Q 017559 178 ------------IV--DLNKLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 178 ------------~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 241 (369)
+. ..++|+.|++++|.... .+..+..+++|++|++++|.+.++ +..+..+++|++|++++|.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 00 12456666666666333 344566677777777777777663 445666777777777777776
Q ss_pred cc-chhhccCCCCCEeccccccccccC-CC---cCcccceecccCC
Q 017559 242 SL-PTSISQLSRLRWLYLVNCVKLQSL-PE---LPLLLVMLGASDC 282 (369)
Q Consensus 242 ~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~---~~~~L~~L~l~~c 282 (369)
.+ +..+..+++|++|++++| .++.+ +. ..++|++|+++++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence 44 355566777777777776 34433 22 2356677777665
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.5e-27 Score=210.91 Aligned_cols=270 Identities=23% Similarity=0.284 Sum_probs=212.7
Q ss_pred CCCCCCCccCCCCcCCCCccEEecCCCCCccccCCccC--CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccc
Q 017559 3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 80 (369)
+.++ .++.+|....+++|++|++++|. +..++.... +|++|+++++.++.++ .+..+++|++|++++|... .++
T Consensus 51 l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~ 126 (347)
T 4fmz_A 51 VAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DIS 126 (347)
T ss_dssp CCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCG
T ss_pred EeCC-ccccchhhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cch
Confidence 4444 35677765689999999999997 777776333 9999999999998876 4889999999999997654 444
Q ss_pred hhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
. +..+++|++|++++|......+. +..+++|++|++++|.... .+. +..+++|+.|++++|.. ..++. +..+++
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~ 200 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQI-EDISP-LASLTS 200 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTT
T ss_pred h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcc-ccccc-ccCCCc
Confidence 4 78899999999999866665544 8899999999999776443 333 77899999999998654 44443 778889
Q ss_pred hhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCC
Q 017559 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 240 (369)
|+.+++++|.+..++. +..+++|++|++++|....++. +..+++|++|++++|.+.+++ .+..+++|++|++++|.+
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCcc
Confidence 9999999998887755 7788999999999998777766 788899999999999888763 477888999999999988
Q ss_pred CccchhhccCCCCCEeccccccccccCC-C---cCcccceecccCCcccccC
Q 017559 241 ESLPTSISQLSRLRWLYLVNCVKLQSLP-E---LPLLLVMLGASDCKRLQFL 288 (369)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~---~~~~L~~L~l~~c~~L~~l 288 (369)
+.++ .+..+++|++|++++|. ++..+ . ..++|++|++++|+ +..+
T Consensus 278 ~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 278 SDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCCG-GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred CCCh-hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccc
Confidence 8775 57888999999999884 44332 1 34778999998886 4433
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.3e-27 Score=212.81 Aligned_cols=302 Identities=19% Similarity=0.212 Sum_probs=236.0
Q ss_pred ccCCCCcCCCCccEEecCCCCCccccCCcc--CCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCC
Q 017559 10 RCFPQNIHFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK 87 (369)
Q Consensus 10 ~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 87 (369)
++++....+++|++|+++++. +..++... .+|++|+++++.++.++. +..+++|++|++++|... .++ .+.+++
T Consensus 35 ~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~ 110 (347)
T 4fmz_A 35 TDVVTQEELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLT 110 (347)
T ss_dssp TSEECHHHHTTCSEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCT
T ss_pred CCcccchhcccccEEEEeCCc-cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-Cch-HHcCCC
Confidence 344444478999999999988 77777533 399999999999998877 889999999999998554 444 588899
Q ss_pred cCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017559 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
+|++|++++|... .++. +..+++|++|++++|.....++. +..+++|+.|++++|... ..+. +..+++|++|+++
T Consensus 111 ~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECT
T ss_pred cCCEEECcCCccc-Cchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEcc
Confidence 9999999997654 4444 88999999999998877666554 889999999999997644 4333 7889999999999
Q ss_pred cccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhh
Q 017559 168 LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI 247 (369)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 247 (369)
+|.+..++. +..+++|+.+++++|....++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~ 261 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AV 261 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hH
Confidence 999988765 7889999999999998776665 7788999999999999998766 888999999999999998875 58
Q ss_pred ccCCCCCEeccccccccccCCC--cCcccceecccCCcccccCC---CchhhhHHhhHHHHHhhhccccccccCCCCCcE
Q 017559 248 SQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDCKRLQFLP---ELTSCLEELDASILQALSNRTGERLSKHMSPVQ 322 (369)
Q Consensus 248 ~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~L~~l~---~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 322 (369)
..+++|++|++++| .+++++. ..++|+.|++++|+--...+ ...+++++|++.+++ ++.... +.....+..
T Consensus 262 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccce
Confidence 89999999999999 6666653 34789999999885322221 123566677766654 222211 333344456
Q ss_pred EEecCc
Q 017559 323 LIFANC 328 (369)
Q Consensus 323 ~~~~~c 328 (369)
+.+.+|
T Consensus 338 L~l~~N 343 (347)
T 4fmz_A 338 ADFANQ 343 (347)
T ss_dssp ESSSCC
T ss_pred eehhhh
Confidence 666665
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=9.9e-28 Score=225.56 Aligned_cols=253 Identities=22% Similarity=0.221 Sum_probs=156.6
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCccccC-CccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccch
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
.+++.+|..+ .+++++|++++|. +..++ ..+. +|++|+++++.++.+ |..+..+++|++|++++|......+.
T Consensus 21 ~~l~~ip~~~-~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 21 KRFVAVPEGI-PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CCCSSCCSCC-CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCcCcCCCCC-CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 4567777755 4678888888887 56553 3333 888888888888765 55778888888888888765443334
Q ss_pred hhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcch
Q 017559 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (369)
.+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 56778888888888877666667777888888888888776555556667778888888888765443333446777777
Q ss_pred hhhccCcccCCCCCc-cccCCCCCcEEEeccCC-CcCCCcccCCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEcCCC
Q 017559 162 ERLHAGLLAIPQAPS-SIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGN 238 (369)
Q Consensus 162 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 238 (369)
+.|++.+|.+..++. .+..+++|+.|++++|. ...++.......+|+.|++++|.+..++. .+..+++|++|++++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 777777777664432 45556666666666554 22333222223344444444444444331 2334444444444444
Q ss_pred CCCccc-hhhccCCCCCEeccccc
Q 017559 239 NIESLP-TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 239 ~l~~~~-~~~~~~~~L~~L~l~~~ 261 (369)
.++.++ ..+..+++|++|++++|
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSS
T ss_pred cCCccChhhccccccCCEEECCCC
Confidence 444332 22334444444444444
No 10
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.9e-27 Score=209.03 Aligned_cols=272 Identities=19% Similarity=0.238 Sum_probs=215.6
Q ss_pred CCCCCccCCCCc--CCC-----CccEEecCCCCCccccCCccC-CeeEEEcCCccccccC-cccCCCCCCCEEeCcCccc
Q 017559 5 GCESLRCFPQNI--HFI-----SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 5 ~c~~l~~~p~~~--~~~-----~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~ 75 (369)
+...++++|... .++ +++.++++++. +..+|..+. +++.|+++++.++.++ ..+..+++|++|++++|..
T Consensus 12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 90 (332)
T 2ft3_A 12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLG-LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccCCCcccCCCCCCCcccCCEEECCCCC-ccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence 344566777655 332 69999999988 888887655 9999999999998775 4789999999999999887
Q ss_pred ccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCC--CCCCc
Q 017559 76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL--GSLPE 153 (369)
Q Consensus 76 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~ 153 (369)
....+..+.++++|++|++++|... .+|..+. ++|++|++++|......+..+..+++|+.|++++|... ...+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred CccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 7666788999999999999997544 5665443 89999999987665555556889999999999997653 24555
Q ss_pred ccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCC-cccCCCCCCcEEeccCCCCccCCC-CCCCCCCCC
Q 017559 154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLE 231 (369)
Q Consensus 154 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 231 (369)
.+..+ +|++|++++|.++.+|..+. ++|++|++++|....++ ..+..+++|+.|++++|.+.+++. .+..+++|+
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred cccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 66677 99999999999999887664 79999999999976665 578899999999999999998654 678899999
Q ss_pred EEEcCCCCCCccchhhccCCCCCEeccccccccccCCC-----c-----CcccceecccCCcc
Q 017559 232 SLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----L-----PLLLVMLGASDCKR 284 (369)
Q Consensus 232 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~-----~~~L~~L~l~~c~~ 284 (369)
+|++++|.++.+|..+..+++|++|++++| .++.++. . ..+++.+++.+++-
T Consensus 245 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp EEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred EEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 999999999999999999999999999998 5666543 1 34578888888763
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=219.23 Aligned_cols=278 Identities=20% Similarity=0.206 Sum_probs=222.3
Q ss_pred CCCCCCCccCCC-Cc-CCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCccc
Q 017559 3 MAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS 75 (369)
Q Consensus 3 l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~ 75 (369)
+.++ +++.++. .+ .+++|++|++++|. +..+ |..+. +|++|+++++.++.++. .+..+++|++|++++|..
T Consensus 39 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 39 LGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp CCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred CCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 4444 3666643 44 89999999999998 6655 54444 99999999999998876 478899999999999887
Q ss_pred ccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCccc
Q 017559 76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL 155 (369)
Q Consensus 76 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 155 (369)
....+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 196 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence 77777788999999999999987776677788999999999999876555445578899999999999977655555668
Q ss_pred CCCcchhhhccCcccCC-CCCccccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCC-CCCCCCCCCCE
Q 017559 156 GNLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLES 232 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 232 (369)
..+++|+.|++++|... .++.......+|++|++++|....++. .+..+++|+.|++++|.+..++ ..+..+++|++
T Consensus 197 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 88999999999887644 455555556689999999998877773 6778899999999999988854 45778899999
Q ss_pred EEcCCCCCCcc-chhhccCCCCCEeccccccccccCCC----cCcccceecccCCc
Q 017559 233 LNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCK 283 (369)
Q Consensus 233 L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~ 283 (369)
|++++|.++.+ +..+..+++|++|++++| .++.++. ..++|+.|++.+++
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 99999988855 567788899999999988 6666654 23678888888765
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=8.3e-28 Score=237.96 Aligned_cols=245 Identities=16% Similarity=0.189 Sum_probs=125.3
Q ss_pred CCCCc---CCCCccEEecCCCCCccccCCccC---CeeEEEcCCcc-ccc--cCcccC-------CCCCCCEEeCcCccc
Q 017559 12 FPQNI---HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTP-IEE--VPLSIE-------CLPNLETLEMSFCNS 75 (369)
Q Consensus 12 ~p~~~---~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~-~~~--l~~~~~-------~l~~L~~L~l~~~~~ 75 (369)
+|..+ .+++|++|++++|.....+|..+. +|+.|++++|. ++. +|..+. .+++|++|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 55544 466666777766665556665443 66666666665 542 444322 334666666666554
Q ss_pred ccccch--hhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccC-CCeEeecCCCCCCCCC
Q 017559 76 LKRLST--SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEG-LKQLKLTGCTKLGSLP 152 (369)
Q Consensus 76 ~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 152 (369)
. .+|. .++++++|++|++++|... .+| .+..+++|++|++++|... .+|..+..+++ |+.|++++|.. ..+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC-CSCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC-CcCc
Confidence 4 5555 5666666666666665444 555 5666666666666655433 55555666666 66666666543 2455
Q ss_pred cccCCCcc--hhhhccCcccCCCCCccc----c--CCCCCcEEEeccCCCcCCCccc-CCCCCCcEEeccCCCCccCCCC
Q 017559 153 ESLGNLKS--LERLHAGLLAIPQAPSSI----V--DLNKLETLSLFECRGLVLPPLL-SGLSSLKKLELGDCEIMEIPPD 223 (369)
Q Consensus 153 ~~~~~l~~--L~~L~l~~~~~~~~~~~~----~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 223 (369)
..+..+.. |+.|++++|.+...++.+ . .+++|+.|++++|....+|..+ ..+++|+.|++++|.+..+|..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 44443332 555555555543221111 1 1224445555544444444322 2344444444444444443333
Q ss_pred CCC--------CCCCCEEEcCCCCCCccchhhc--cCCCCCEeccccc
Q 017559 224 IGC--------LSSLESLNLSGNNIESLPTSIS--QLSRLRWLYLVNC 261 (369)
Q Consensus 224 ~~~--------~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~ 261 (369)
+.. +++|++|++++|.++.+|..+. .+++|+.|++++|
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence 221 1144444444444444444443 4444444444444
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.1e-26 Score=206.09 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=215.2
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
+++.++++++. +..+|..+. .++.|+++++.++.++. .+..+++|++|++++|......|..+.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCC-ccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 69999999988 888887655 99999999999998776 6899999999999998777666888999999999999997
Q ss_pred cCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCC--CCCcccCCCcchhhhccCcccCCCCC
Q 017559 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG--SLPESLGNLKSLERLHAGLLAIPQAP 175 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (369)
... .+|..+. ++|++|++++|......+..+.++++|+.|++++|.... ..+..+..+++|++|++++|.+..+|
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 544 5665443 799999999877665556678899999999999976542 45567888999999999999999888
Q ss_pred ccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEcCCCCCCccchhhccCCCC
Q 017559 176 SSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLPTSISQLSRL 253 (369)
Q Consensus 176 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 253 (369)
..+. ++|++|++++|....+ +..+..+++|++|++++|.+.+++. .+..+++|++|++++|.++.+|..+..+++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 7664 8999999999996655 5678899999999999999998544 6788999999999999999999999999999
Q ss_pred CEeccccccccccCCCc----------CcccceecccCCc
Q 017559 254 RWLYLVNCVKLQSLPEL----------PLLLVMLGASDCK 283 (369)
Q Consensus 254 ~~L~l~~~~~l~~~~~~----------~~~L~~L~l~~c~ 283 (369)
++|++++| .++.++.. ..+++.+++.+++
T Consensus 266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 99999998 56666531 2456777777765
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-26 Score=212.64 Aligned_cols=258 Identities=17% Similarity=0.101 Sum_probs=144.1
Q ss_pred CCCCccEEecCCCCCccccCCcc----CCeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcE
Q 017559 17 HFISSIKIDCYKCVNLREFPRIS----GNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~----~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (369)
.++++++++++++. ++.+|... .+|++|+++++.++.++. .+..+++|++|++++|......+..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 56677777777766 66666532 377777777777765553 5667777777777776655444555666777777
Q ss_pred EecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCc------------
Q 017559 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK------------ 159 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~------------ 159 (369)
|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.... ++ +..++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 7777764443223335667777777777665444445556667777777777654322 11 12222
Q ss_pred -------chhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCC
Q 017559 160 -------SLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLE 231 (369)
Q Consensus 160 -------~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~ 231 (369)
+|++|++++|.+..++.. ..++|+.|++++|..... ..+..+++|++|++++|.+.+. +..+..+++|+
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 334444444443332221 124555555555554433 2345555666666666655552 44455555666
Q ss_pred EEEcCCCCCCccchhhccCCCCCEeccccccccccCCCc---CcccceecccCC
Q 017559 232 SLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDC 282 (369)
Q Consensus 232 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c 282 (369)
+|++++|.++.++..+..+++|++|++++| .++.++.. .++|++|+++++
T Consensus 276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp EEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred EEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 666666655555554555556666666555 34444331 244555555554
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.3e-27 Score=222.01 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=100.6
Q ss_pred CCCCCCCCccCCCCcCCCCccEEecCCCCCccccC-Ccc---CCeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccc
Q 017559 2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFP-RIS---GNVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSL 76 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~-~~~---~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~ 76 (369)
++.++ +++.+|..+. ++|++|++++|. +..++ ..+ .+|++|+++++.++.+ |..+..+++|++|++++|...
T Consensus 6 ~ls~n-~l~~ip~~~~-~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 6 DRSKN-GLIHVPKDLS-QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp ECTTS-CCSSCCCSCC-TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ecCCC-Cccccccccc-ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 34444 5778887665 889999999988 66655 233 3899999999988866 567888999999999997654
Q ss_pred cccchhhccCCcCcEEecCCCcCcc-cCchhhhccCccceecccccccccccchhhhcccCC--CeEeecCCCC
Q 017559 77 KRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL--KQLKLTGCTK 147 (369)
Q Consensus 77 ~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 147 (369)
.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..+..+++| +.|++++|..
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 56664 68999999999987665 467888889999999988765433 234455555 6666666544
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.7e-27 Score=227.92 Aligned_cols=146 Identities=17% Similarity=0.163 Sum_probs=94.8
Q ss_pred CCccCCCCcCCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|..+ .++|++|++++|. +..+ +..+. +|++|+++++.++.++ ..+..+++|++|++++|......+..
T Consensus 16 ~l~~ip~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPSGL-TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCSSCCSCC-CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccccccccC-CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 567777755 3678888888877 5554 33333 7888888777777655 45777788888888877665555555
Q ss_pred hccCCcCcEEecCCCcCcc-cCchhhhccCccceecccccccccccc-hhhhcccCCCeEeecCCCCCCCCCccc
Q 017559 83 ICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESL 155 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 155 (369)
++++++|++|++++|.... ..+..+..+++|++|++++|...+.++ ..+.++++|++|++++|...+..+..+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 7777888888887765443 245566777777777777665444443 355666666666666655443333333
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.5e-27 Score=224.33 Aligned_cols=328 Identities=16% Similarity=0.136 Sum_probs=183.7
Q ss_pred CCCCCCCCccCC-CCc-CCCCccEEecCCCCCccccC-CccC---CeeEEEcCCccccccCcc-cCCCCCCCEEeCcCcc
Q 017559 2 IMAGCESLRCFP-QNI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCN 74 (369)
Q Consensus 2 ~l~~c~~l~~~p-~~~-~~~~L~~L~l~~~~~~~~~~-~~~~---~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 74 (369)
++.++. ++.++ ..+ .+++|++|++++|. +..++ ..+. +|++|+++++.++.++.. ++.+++|++|++++|.
T Consensus 32 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 32 DLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp ECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred ECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 345554 55654 334 78889999998887 55554 3343 888888888888876653 7888888888888876
Q ss_pred ccc-ccchhhccCCcCcEEecCCCcCcccCc-hhhhccCccceecccccccccccchhhh--------------------
Q 017559 75 SLK-RLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIE-------------------- 132 (369)
Q Consensus 75 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------- 132 (369)
... ..+..++++++|++|++++|.....++ ..+..+++|++|++++|...+..+..+.
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence 654 345567778888888888876444444 4677777777777776655444443333
Q ss_pred ----cccCCCeEeecCCCCCCCC--Ccc----------------------------------------------------
Q 017559 133 ----NLEGLKQLKLTGCTKLGSL--PES---------------------------------------------------- 154 (369)
Q Consensus 133 ----~~~~L~~L~l~~~~~~~~~--~~~---------------------------------------------------- 154 (369)
.+++|+.|++++|...+.. +..
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 269 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence 2455566666554332210 000
Q ss_pred -------cCC-----------------------------CcchhhhccCcccCCCCCccc-cCCCCCcEEEeccCCCcC-
Q 017559 155 -------LGN-----------------------------LKSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLV- 196 (369)
Q Consensus 155 -------~~~-----------------------------l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~- 196 (369)
+.. .++|+.+++++|.+..+|..+ ..+++|++|++++|....
T Consensus 270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccc
Confidence 000 122334444444444444433 346666677776666332
Q ss_pred CC---cccCCCCCCcEEeccCCCCccCC---CCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEecccccc--------
Q 017559 197 LP---PLLSGLSSLKKLELGDCEIMEIP---PDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV-------- 262 (369)
Q Consensus 197 ~~---~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-------- 262 (369)
++ ..+..+++|++|++++|.+.+++ ..+..+++|++|++++|.++.+|..++.+++|++|++++|.
T Consensus 350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~ 429 (549)
T 2z81_A 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429 (549)
T ss_dssp HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS
T ss_pred cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh
Confidence 11 12445556666666666665532 12445556666666666665555555555555555555552
Q ss_pred ------------ccccCCCcCcccceecccCCcccccCCCc--hhhhHHhhHHHHHhhhccccccccCCCCCcEEEecCc
Q 017559 263 ------------KLQSLPELPLLLVMLGASDCKRLQFLPEL--TSCLEELDASILQALSNRTGERLSKHMSPVQLIFANC 328 (369)
Q Consensus 263 ------------~l~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c 328 (369)
.+++++...++|++|+++++ +++.++.. .+++++|++..+ .++......+.....+..+.+.++
T Consensus 430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence 23333333445555555554 34444322 345555555543 222222222334445567777777
Q ss_pred cCcCh
Q 017559 329 LKLNE 333 (369)
Q Consensus 329 ~~l~~ 333 (369)
+-..+
T Consensus 508 ~~~~~ 512 (549)
T 2z81_A 508 PWDCS 512 (549)
T ss_dssp CBCCC
T ss_pred CccCC
Confidence 65544
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.3e-26 Score=224.25 Aligned_cols=319 Identities=20% Similarity=0.112 Sum_probs=160.6
Q ss_pred CCccCCCCcCCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|..+ .+++++|++++|. +..+ +..+. +|++|+++++.+..+ |..+..+++|++|++++|......|..
T Consensus 23 ~l~~iP~~l-~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 23 GLNEIPGTL-PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp CCSSCCTTS-CTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcccCcCCC-CCcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 345566544 2356666666666 4444 22332 666666666666544 345666666666666666555444555
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcch-
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL- 161 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L- 161 (369)
++++++|++|++++|......+..+..+++|++|++++|...+.....+..+++|+.|++++|......+..++.+++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 6666666666666654443334445556666666666544333111222235555555555543332222333333333
Q ss_pred ----------------------------------------------------------------------------hhhc
Q 017559 162 ----------------------------------------------------------------------------ERLH 165 (369)
Q Consensus 162 ----------------------------------------------------------------------------~~L~ 165 (369)
+.++
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 3444
Q ss_pred cCcccCCCCCc-cccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCC-c
Q 017559 166 AGLLAIPQAPS-SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIE-S 242 (369)
Q Consensus 166 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~ 242 (369)
+++|.+..++. .+..+++|++|++++|....+|..+..+++|++|++++|.+.++ +..+..+++|++|++++|.+. .
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 44444443332 24455556666666665555555555555666666666655553 334555556666666665554 3
Q ss_pred cch-hhccCCCCCEeccccccccccC---C---CcCcccceecccCCcccccCCC---chhhhHHhhHHHHHhhhccccc
Q 017559 243 LPT-SISQLSRLRWLYLVNCVKLQSL---P---ELPLLLVMLGASDCKRLQFLPE---LTSCLEELDASILQALSNRTGE 312 (369)
Q Consensus 243 ~~~-~~~~~~~L~~L~l~~~~~l~~~---~---~~~~~L~~L~l~~c~~L~~l~~---~~~~l~~l~~~~~~~l~~~~~~ 312 (369)
++. .+..+++|++|++++|. ++.+ + ...++|++|+++++.--...+. ..+++++|++..+.-.......
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred cchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 332 24556666666666652 2222 1 1235566666666542222121 2345666665544321111111
Q ss_pred cccCCCCCcEEEecCcc
Q 017559 313 RLSKHMSPVQLIFANCL 329 (369)
Q Consensus 313 ~~~~~~~~~~~~~~~c~ 329 (369)
.+.....+..+.+++|.
T Consensus 420 ~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTCTTCCEEECTTCC
T ss_pred hhhCcccCCEEECCCCc
Confidence 23333445567777663
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.8e-27 Score=209.93 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=204.5
Q ss_pred CCeeEEEcCCcccc---ccCcccCCCCCCCEEeCcC-cccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccce
Q 017559 40 GNVVELNLMCTPIE---EVPLSIECLPNLETLEMSF-CNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEE 115 (369)
Q Consensus 40 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 115 (369)
++++.|+++++.+. .+|..+..+++|++|++++ |.....+|..+.++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47899999888887 5788888999999999995 6666678888889999999999998777688888999999999
Q ss_pred ecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCc-chhhhccCcccCC-CCCccccCCCCCcEEEeccCC
Q 017559 116 INLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK-SLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECR 193 (369)
Q Consensus 116 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 193 (369)
|++++|...+.+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+. .+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99998877667888888999999999999776667888888887 8999999999887 6677777776 9999999998
Q ss_pred Cc-CCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCCCCEeccccccccccCCCc-
Q 017559 194 GL-VLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL- 270 (369)
Q Consensus 194 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 270 (369)
.. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.--..+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 44 4566788899999999999998875555778899999999999998 78888899999999999998544456553
Q ss_pred -CcccceecccCCccccc
Q 017559 271 -PLLLVMLGASDCKRLQF 287 (369)
Q Consensus 271 -~~~L~~L~l~~c~~L~~ 287 (369)
.++|+.+++.+++.+..
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 46678888888776553
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1e-27 Score=212.86 Aligned_cols=247 Identities=18% Similarity=0.193 Sum_probs=215.7
Q ss_pred CCccEEecCCCCCcc--ccCCccC---CeeEEEcC-Ccccc-ccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcE
Q 017559 19 ISSIKIDCYKCVNLR--EFPRISG---NVVELNLM-CTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 19 ~~L~~L~l~~~~~~~--~~~~~~~---~L~~L~l~-~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (369)
.+++.|+++++.... .+|..+. +|++|+++ ++.+. .+|..+..+++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 679999999998444 6776555 99999998 47776 78888999999999999998887788988999999999
Q ss_pred EecCCCcCcccCchhhhccCccceecccccccccccchhhhccc-CCCeEeecCCCCCCCCCcccCCCcchhhhccCccc
Q 017559 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLE-GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA 170 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (369)
|++++|.....+|..+..+++|++|++++|...+.+|..+..++ +|+.|++++|...+..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999887778899999999999999998887768888899998 999999999877667888888887 9999999999
Q ss_pred CC-CCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEcCCCCCC-ccchhh
Q 017559 171 IP-QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSI 247 (369)
Q Consensus 171 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~ 247 (369)
+. ..+..+..+++|+.|++++|.....+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.++ .+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 88 45667888999999999999966555557888999999999999985 8888899999999999999998 66654
Q ss_pred ccCCCCCEeccccccccccC
Q 017559 248 SQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 248 ~~~~~L~~L~l~~~~~l~~~ 267 (369)
..+++|+.+++++|+.+...
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 88999999999999876654
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.2e-26 Score=216.22 Aligned_cols=268 Identities=18% Similarity=0.173 Sum_probs=153.3
Q ss_pred CCCCccEEecCCCCCccccCCccC--CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEec
Q 017559 17 HFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (369)
.+++|++|++++|. +..+|.... +|++|+++++.++.++ +..+++|++|++++|.... ++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSC-CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCC-cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 56667777777765 555553222 6777777777666664 6666777777777665433 22 556677777777
Q ss_pred CCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017559 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|.... ++ ++.+++|++|++++|...+ ++ +..+++|+.|++++|..++.+ .+..+++|+.|++++|.++.+
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 7654333 33 5666777777776554333 32 456666777777666555544 255666666666666666665
Q ss_pred CccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCC--
Q 017559 175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSR-- 252 (369)
Q Consensus 175 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-- 252 (369)
+ +..+++|+.|++++|....++ +..+++|+.|++++|.+.++| +..+++|++|++++|.++.++ .+.+++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~ 257 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLT 257 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCC
Confidence 4 555666666666666655443 555666666666666666654 555666666666666666544 222332
Q ss_pred --------CCEeccccccccccCCC-cCcccceecccCCcccccCCCchhhhHHhhHHHHHhh
Q 017559 253 --------LRWLYLVNCVKLQSLPE-LPLLLVMLGASDCKRLQFLPELTSCLEELDASILQAL 306 (369)
Q Consensus 253 --------L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l 306 (369)
|+.|++++|..+..+|. ..++|+.|++++|+.++.++...+.++.+++..++++
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred EEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 33334444433333331 2245555555555555554444444444444444433
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=5.1e-26 Score=220.19 Aligned_cols=251 Identities=18% Similarity=0.154 Sum_probs=135.3
Q ss_pred CccCC-CCc-CCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccch
Q 017559 9 LRCFP-QNI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p-~~~-~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
++.++ ..+ .+++|++|++++|. +..+ |..+. +|++|++++|.+..+ |..+..+++|++|++++|......+.
T Consensus 45 i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~ 123 (606)
T 3t6q_A 45 LPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123 (606)
T ss_dssp CSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS
T ss_pred cCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc
Confidence 44443 233 66777777777766 3333 33333 667777766666544 44566666666666666554443344
Q ss_pred hhccCCcCcEEecCCCcCccc-CchhhhccCccceecccccccccccchhhhcccCCC--eEeec---------------
Q 017559 82 SICKLKSLRSLDLSYCINLES-FPEILEKMELLEEINLEEASNIKELPSSIENLEGLK--QLKLT--------------- 143 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~--------------- 143 (369)
.++++++|++|++++|..... .+.. ..+++|++|++++|......+..+..+++|+ .|+++
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred hhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 455566666666666544332 1222 2255555555554433333233333344333 33333
Q ss_pred ------------------------------------------------------------CCCCCCCCCcccCCCcchhh
Q 017559 144 ------------------------------------------------------------GCTKLGSLPESLGNLKSLER 163 (369)
Q Consensus 144 ------------------------------------------------------------~~~~~~~~~~~~~~l~~L~~ 163 (369)
+|......+..+..+++|++
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 22221222223566677777
Q ss_pred hccCcccCCCCCccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCcc-CCC-CCCCCCCCCEEEcCCCCC
Q 017559 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIME-IPP-DIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 164 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~l 240 (369)
|++++|.++.+|..+..+++|++|++++|....+ +..+..+++|++|++++|.+.. ++. .+..+++|++|++++|.+
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred EeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 7777777777777777777777777777765444 3345556666666666665543 322 245555666666666555
Q ss_pred Ccc---chhhccCCCCCEeccccc
Q 017559 241 ESL---PTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 241 ~~~---~~~~~~~~~L~~L~l~~~ 261 (369)
+.+ +..+..+++|++|++++|
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSC
T ss_pred ccccCcchhcccCCCCCEEECCCC
Confidence 533 334455555555555555
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=207.02 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=151.0
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.|+++++.++.+|..+..+++|++|++++|... .+|..++++++|++|++++|... .+|..+..+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 777788877777777777777788888888876655 66777777888888888876544 6677777788888888887
Q ss_pred cccccccchhhhc---------ccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEecc
Q 017559 121 ASNIKELPSSIEN---------LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFE 191 (369)
Q Consensus 121 ~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 191 (369)
|...+.+|..+.. +++|+.|++++|. ++.+|..+..+++|++|++++|.+..++..+..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 7766666655443 6677777777654 33666666666777777777777666666666677777777776
Q ss_pred CC-CcCCCcccCCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCCCCEeccccc
Q 017559 192 CR-GLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 192 ~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~ 261 (369)
|. ...+|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 65 44556666666777777777766555 5556666677777777776544 66666677777777766544
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.3e-26 Score=219.34 Aligned_cols=264 Identities=16% Similarity=0.103 Sum_probs=147.0
Q ss_pred CCCCccEEecCCCCCccccCCc----cCCeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcE
Q 017559 17 HFISSIKIDCYKCVNLREFPRI----SGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (369)
.+++++.++++++. +..+|.. +.+|++|+++++.++.++. .+..+++|++|++++|......+..++++++|++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 44556666666655 5555542 1256666666666654443 4556666666666665544444444555666666
Q ss_pred EecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCccc----------------
Q 017559 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL---------------- 155 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------- 155 (369)
|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.........+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 6666654333223334566666666666554444444455556666666665543221110000
Q ss_pred CCC---------------------cchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEecc
Q 017559 156 GNL---------------------KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELG 213 (369)
Q Consensus 156 ~~l---------------------~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~ 213 (369)
... ++|+.|++++|.++.. ..+..+++|+.|++++|....+ |..+..+++|+.|+++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 111 2344445555544442 3455666677777776664433 4556666777777777
Q ss_pred CCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCC-CcCcccceecccCCc
Q 017559 214 DCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-ELPLLLVMLGASDCK 283 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~ 283 (369)
+|.+.+++..+..+++|++|++++|.++.+|..+..+++|+.|++++|. +..++ ..+++|+.|++++++
T Consensus 287 ~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 287 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp TSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 7777666665666677777777777777666666667777777777663 44333 234566666666654
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.8e-26 Score=213.66 Aligned_cols=284 Identities=17% Similarity=0.139 Sum_probs=228.3
Q ss_pred CCCCCCCCccCCCCcCCCCccEEecCCCCCccccC-CccCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccc
Q 017559 2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFP-RISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 80 (369)
++.++ +++.+|....+++|++|++++|. +..++ ....+|++|+++++.++.++ ++.+++|++|++++|.... ++
T Consensus 48 ~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~ 122 (457)
T 3bz5_A 48 DCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD 122 (457)
T ss_dssp ECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC
T ss_pred EccCC-CcccChhhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec
Confidence 34554 46777755589999999999998 77775 12239999999999999886 8899999999999986554 44
Q ss_pred hhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
++.+++|++|++++|.... ++ ++.+++|++|++++|...+.+ .+..+++|+.|++++|. ++.++ +..+++
T Consensus 123 --~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCC
Confidence 7889999999999976554 43 788999999999988777666 36789999999999965 44455 788999
Q ss_pred hhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCC
Q 017559 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 240 (369)
|+.|++++|.++.+ .+..+++|+.|++++|....+| +..+++|+.|++++|.+.+++ ...+++|+.|++++|.+
T Consensus 193 L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCC
T ss_pred CCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCC
Confidence 99999999999987 3788999999999999988887 788999999999999999865 34566666666655544
Q ss_pred Cccch---------hhccCCCCCEeccccccccccCCCcCcccceecccCCcccccCCCchhhhHHhhHHHHHhh
Q 017559 241 ESLPT---------SISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQAL 306 (369)
Q Consensus 241 ~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l 306 (369)
+.+.- ..+.+++|+.|++++|..+..+|....+++.+++++|++|+.+....+.++.+++..|+++
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L 341 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKL 341 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcC
Confidence 42210 1457899999999999988888877788999999999999998877777666654444443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.1e-26 Score=211.24 Aligned_cols=281 Identities=19% Similarity=0.133 Sum_probs=215.6
Q ss_pred CCCCCCCCccC-CCCc-CCCCccEEecCCCCCccccC-CccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcc
Q 017559 2 IMAGCESLRCF-PQNI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCN 74 (369)
Q Consensus 2 ~l~~c~~l~~~-p~~~-~~~~L~~L~l~~~~~~~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 74 (369)
++.++ .++.+ |..+ .+++|++|++++|.....++ ..+. +|++|+++++.++.+ |..+..+++|++|++++|.
T Consensus 36 ~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 36 DLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp ECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 34555 35555 4445 89999999999998544554 3333 999999999998865 6678999999999999987
Q ss_pred cccccchh--hccCCcCcEEecCCCcCcccCchh-hhccCccceecccccccccccchhhhc------------------
Q 017559 75 SLKRLSTS--ICKLKSLRSLDLSYCINLESFPEI-LEKMELLEEINLEEASNIKELPSSIEN------------------ 133 (369)
Q Consensus 75 ~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------ 133 (369)
.....+.. +..+++|++|++++|......|.. +..+++|++|++++|......+..+..
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 76555443 788999999999998776665654 789999999999987765544443333
Q ss_pred ----------------ccCCCeEeecCCCCCCCCCcc-------------------------------------cC--CC
Q 017559 134 ----------------LEGLKQLKLTGCTKLGSLPES-------------------------------------LG--NL 158 (369)
Q Consensus 134 ----------------~~~L~~L~l~~~~~~~~~~~~-------------------------------------~~--~l 158 (369)
+++|+.|++++|......+.. +. ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 356788888876543211110 11 23
Q ss_pred cchhhhccCcccCCCC-CccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEc
Q 017559 159 KSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNL 235 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l 235 (369)
++|+.+++++|.+... +..+..+++|++|++++|....+ +..+..+++|++|++++|.+.++ +..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 5789999999988854 56788899999999999996655 55788999999999999999885 556788999999999
Q ss_pred CCCCCCcc-chhhccCCCCCEeccccccccccCCC----cCcccceecccCCcc
Q 017559 236 SGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCKR 284 (369)
Q Consensus 236 ~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~ 284 (369)
++|.++.+ |..+..+++|++|++++| .+++++. ..++|++|++++++-
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 99999966 678899999999999998 6777664 346899999988753
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=215.52 Aligned_cols=316 Identities=18% Similarity=0.094 Sum_probs=189.2
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccC-CccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|... .+++++|++++|. +..++ ..+. +|++|++++|.++.+ |..+..+++|++|++++|... .+|..
T Consensus 42 ~L~~ip~~~-~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 118 (562)
T 3a79_B 42 NLTHVPKDL-PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC 118 (562)
T ss_dssp CCCSCCTTS-CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC
T ss_pred CCccCCCCC-CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc
Confidence 467777755 3778888888887 55555 2333 888888888888766 456778888888888886644 56654
Q ss_pred hccCCcCcEEecCCCcCcc-cCchhhhccCccceecccccccccccchhhhcccCC--CeEeecCCCC--CCCCCcccCC
Q 017559 83 ICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL--KQLKLTGCTK--LGSLPESLGN 157 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~ 157 (369)
.+++|++|++++|.... ..|..++++++|++|++++|..... .+..+++| +.|++++|.. ....+..+..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence 68888888888876554 2457788888888888887654332 23334444 6666666544 2222222211
Q ss_pred --------------------------Cc----------------------------------------------------
Q 017559 158 --------------------------LK---------------------------------------------------- 159 (369)
Q Consensus 158 --------------------------l~---------------------------------------------------- 159 (369)
++
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 11
Q ss_pred ---chhhhccCcccCC-CCCccc-----------------------------------------------------cCCC
Q 017559 160 ---SLERLHAGLLAIP-QAPSSI-----------------------------------------------------VDLN 182 (369)
Q Consensus 160 ---~L~~L~l~~~~~~-~~~~~~-----------------------------------------------------~~~~ 182 (369)
+|++|++++|.+. .+|..+ ..++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 3444444444443 333322 3456
Q ss_pred CCcEEEeccCCCcC-CCcccCCCCCCcEEeccCCCCccCC---CCCCCCCCCCEEEcCCCCCCc-cchh-hccCCCCCEe
Q 017559 183 KLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEIP---PDIGCLSSLESLNLSGNNIES-LPTS-ISQLSRLRWL 256 (369)
Q Consensus 183 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~~~~L~~L 256 (369)
+|++|++++|.... .|..+..+++|+.|++++|.+.+++ ..+..+++|++|++++|.++. +|.. +..+++|++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 66667776666433 4555666677777777777666533 345666777777777776664 5543 4566777777
Q ss_pred ccccccccccCCCcC-cccceecccCCcccccCCCc---hhhhHHhhHHHHHhhhccccccccCCCCCcEEEecCccCcC
Q 017559 257 YLVNCVKLQSLPELP-LLLVMLGASDCKRLQFLPEL---TSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLN 332 (369)
Q Consensus 257 ~l~~~~~l~~~~~~~-~~L~~L~l~~c~~L~~l~~~---~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~ 332 (369)
++++|.--..++... ++|+.|+++++ +++.++.. .++++.|++.++. ++.+....+.....+..+.+.+++-..
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 777764323333333 57788888776 55555432 3456666666543 322222223444445567777765444
Q ss_pred h
Q 017559 333 E 333 (369)
Q Consensus 333 ~ 333 (369)
+
T Consensus 512 ~ 512 (562)
T 3a79_B 512 T 512 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=9.3e-26 Score=211.36 Aligned_cols=260 Identities=22% Similarity=0.307 Sum_probs=142.1
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCCccC--CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhcc
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICK 85 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 85 (369)
+++.+|....+++|++|++++|. +..++.... +|++|+++++.+..++. +..+++|++|++++|... .++. +.+
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-~~~ 132 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDP-LKN 132 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTT
T ss_pred CCccCcchhhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChH-HcC
Confidence 35667765578888888888887 666665222 88888888888877766 778888888888886543 3343 777
Q ss_pred CCcCcEEecCCCcCcccCchhhhccCccceec---------------------ccccccccccchhhhcccCCCeEeecC
Q 017559 86 LKSLRSLDLSYCINLESFPEILEKMELLEEIN---------------------LEEASNIKELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~---------------------l~~~~~~~~~~~~~~~~~~L~~L~l~~ 144 (369)
+++|++|++++|... .++ .+..+++|++|+ +++|. +..++ .+..+++|+.|++++
T Consensus 133 l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccC-CCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecC
Confidence 888888888876433 232 244444444444 44332 11111 233444444444444
Q ss_pred CCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCC
Q 017559 145 CTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI 224 (369)
Q Consensus 145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (369)
|......+ ++.+++|+.|++++|.+..+ ..+..+++|++|++++|....++. +..+++|+.|++++|.+.+++. +
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-G
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-c
Confidence 33222111 33444455555555544443 234445555555555555443333 4445555555555555555433 4
Q ss_pred CCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCC--cCcccceecccCC
Q 017559 225 GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDC 282 (369)
Q Consensus 225 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c 282 (369)
..+++|++|++++|.++.++. +..+++|++|++++| .+++++. ..++|+.|++++|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS
T ss_pred cCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC
Confidence 455555555555555554443 445555555555555 2333322 2244555555554
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.9e-26 Score=216.35 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred CCCCCCCCccCCC-Cc-CCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCccc
Q 017559 2 IMAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 2 ~l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 75 (369)
++.++. ++.+++ .+ .+++|++|++++|. +..+ |..+. +|++|++++|.++.+|.. .+++|++|++++|..
T Consensus 27 ~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 27 NISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp ECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCC
T ss_pred ECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcc
Confidence 344553 555553 33 78888888888887 5554 44443 888888888888888765 788888888888776
Q ss_pred cc-ccchhhccCCcCcEEecCCCcC
Q 017559 76 LK-RLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 76 ~~-~~~~~~~~l~~L~~L~l~~~~~ 99 (369)
.. .+|..++++++|++|++++|..
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ccccchhhhccCCcceEEEecCccc
Confidence 65 4667788888888888887654
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=7.4e-26 Score=219.06 Aligned_cols=138 Identities=20% Similarity=0.101 Sum_probs=91.8
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|... .+++++|++++|. +..++. .+. +|++|+++++.++.+ +..+..+++|++|++++|......|..
T Consensus 22 ~l~~ip~~~-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 22 KLSKVPDDI-PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp CCSSCCTTS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CcccCCCCC-CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 466677655 3667777777777 555543 332 777777777777765 345677777777777776655555666
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceeccccccccc-ccchhhhcccCCCeEeecCCCC
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 147 (369)
++++++|++|++++|......+..++.+++|++|++++|...+ .+|..+.++++|++|++++|..
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 7777777777777765554444566777777777777665444 4566677777777777776543
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.8e-25 Score=219.27 Aligned_cols=212 Identities=22% Similarity=0.233 Sum_probs=129.7
Q ss_pred hhhhccCccceecccccccccccc-hhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC---CCCccccC
Q 017559 105 EILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIVD 180 (369)
Q Consensus 105 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~ 180 (369)
..+..+++|++|++++|...+.++ ..+.++++|+.|++++|......+..+..+++|+.|++.+|.+. ..|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 344455555555555444333332 34445555555555554433333344555666666666666543 34556677
Q ss_pred CCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCC---------CCCCCCCCCEEEcCCCCCCccch-hhcc
Q 017559 181 LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP---------DIGCLSSLESLNLSGNNIESLPT-SISQ 249 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~~~l~~~~~-~~~~ 249 (369)
+++|+.|++++|....++. .+..+++|+.|++++|.+..++. .+..+++|++|++++|.++.+|. .+..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 7788888888877665553 46777788888888887765321 25667788888888888887774 4677
Q ss_pred CCCCCEeccccccccccCCCc----CcccceecccCCcccccCCC-----chhhhHHhhHHHHHhhhcccc-ccccCCC
Q 017559 250 LSRLRWLYLVNCVKLQSLPEL----PLLLVMLGASDCKRLQFLPE-----LTSCLEELDASILQALSNRTG-ERLSKHM 318 (369)
Q Consensus 250 ~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~c~~L~~l~~-----~~~~l~~l~~~~~~~l~~~~~-~~~~~~~ 318 (369)
+++|++|++++| .++.++.. .++|+.|+++++ .++.++. ..++++.+++.+++..+++.. .++..|.
T Consensus 559 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 559 LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred ccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence 888888888777 56666542 367888888776 5555543 234556666666665555542 4444443
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=8.4e-25 Score=195.66 Aligned_cols=267 Identities=16% Similarity=0.188 Sum_probs=211.2
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++.+|..+ .+++++|++++|. +..++. .+. +|++|+++++.++.+ |..+..+++|++|++++|... .+|..
T Consensus 42 ~l~~lp~~~-~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~ 118 (330)
T 1xku_A 42 GLEKVPKDL-PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK 118 (330)
T ss_dssp CCCSCCCSC-CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS
T ss_pred CccccCccC-CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh
Confidence 466777655 4789999999998 777664 333 999999999999877 678999999999999997654 56654
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceeccccccccc--ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|+.|++++|. +..+|..+. ++
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~ 193 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PS 193 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TT
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--cc
Confidence 43 899999999987776667789999999999999876643 556778899999999999965 455665443 78
Q ss_pred hhhhccCcccCCCC-CccccCCCCCcEEEeccCCCcCCC-cccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCC
Q 017559 161 LERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++|++++|.+..+ +..+..+++|++|++++|....++ ..+..+++|++|++++|.+..+|..+..+++|++|++++|
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 99999999999866 567889999999999999966655 4688899999999999999999999999999999999999
Q ss_pred CCCccchhh-c------cCCCCCEeccccccccc-cCC-C---cCcccceecccCC
Q 017559 239 NIESLPTSI-S------QLSRLRWLYLVNCVKLQ-SLP-E---LPLLLVMLGASDC 282 (369)
Q Consensus 239 ~l~~~~~~~-~------~~~~L~~L~l~~~~~l~-~~~-~---~~~~L~~L~l~~c 282 (369)
.++.++... . ..+.++.+++++|+.-. .++ . ...+++.++++++
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 999776432 2 24789999999996321 121 1 1244566665543
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.2e-25 Score=211.15 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=72.0
Q ss_pred CCCCCCCCccCCC-Cc-CCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCccc
Q 017559 2 IMAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 2 ~l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 75 (369)
++.++. ++.+|+ .+ .+++|++|++++|. +..+ |..+. +|++|++++|.++.+|.. .+++|++|++++|..
T Consensus 58 ~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 58 SLSQNS-ISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp ECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred ECCCCC-ccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence 344553 566664 34 88999999999998 6665 44444 899999999999988875 788999999999876
Q ss_pred cc-ccchhhccCCcCcEEecCCCcCc
Q 017559 76 LK-RLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 76 ~~-~~~~~~~~l~~L~~L~l~~~~~~ 100 (369)
.. ..|..++++++|++|++++|...
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cccCchHhhcccCcccEEecCCCccc
Confidence 55 34567888999999999887543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=223.18 Aligned_cols=136 Identities=16% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCccCCCCcCCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCcc-cccc-CcccCCCCCCCEEeCcCcccccccch
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTP-IEEV-PLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
+++.+|. ..+++++|++++|. +..+ +..+. +|++|+++++. +..+ +..+..+++|++|++++|......|.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 4555665 34556666666655 3333 22222 55555554442 2233 33455555555555555544444455
Q ss_pred hhccCCcCcEEecCCCcCcccCchh--hhccCccceeccccccccccc-chhhhcccCCCeEeecCCC
Q 017559 82 SICKLKSLRSLDLSYCINLESFPEI--LEKMELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCT 146 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 146 (369)
.+.++++|++|++++|......+.. +..+++|++|++++|...+.. +..+.++++|+.|++++|.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 5555555555555555443333322 455555555555544433322 2344555555555555543
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.4e-25 Score=217.09 Aligned_cols=266 Identities=18% Similarity=0.166 Sum_probs=214.9
Q ss_pred CCCCcCCCCccEEecCCCCCccccCCccC--CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcC
Q 017559 12 FPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSL 89 (369)
Q Consensus 12 ~p~~~~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 89 (369)
+|....+++|+.|+++++. +..++.... +|++|+++++.++.+|. + .+++|++|++++|...... .+..+++|
T Consensus 278 ~~~~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L 352 (606)
T 3vq2_A 278 IVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSL 352 (606)
T ss_dssp GGSCGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTC
T ss_pred ccccccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--hhccCCCC
Confidence 3443378899999999988 677774333 89999998888888884 4 8899999999998665544 46689999
Q ss_pred cEEecCCCcCccc--CchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCC-cccCCCcchhhhcc
Q 017559 90 RSLDLSYCINLES--FPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHA 166 (369)
Q Consensus 90 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 166 (369)
++|++++|..... .+..+..+++|++|++++|. +..++..+..+++|+.|++++|...+..+ ..+..+++|++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 9999999765543 37888899999999999776 44566778889999999999977666555 56788999999999
Q ss_pred CcccCCC-CCccccCCCCCcEEEeccCCCcC--CCcccCCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEcCCCCCCc
Q 017559 167 GLLAIPQ-APSSIVDLNKLETLSLFECRGLV--LPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIES 242 (369)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~ 242 (369)
++|.+.. .+..+..+++|++|++++|.... +|..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.++.
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 9999875 45678889999999999998553 67788899999999999999988 45668889999999999999985
Q ss_pred c-chhhccCCCCCEeccccccccccCCCc----CcccceecccCCcc
Q 017559 243 L-PTSISQLSRLRWLYLVNCVKLQSLPEL----PLLLVMLGASDCKR 284 (369)
Q Consensus 243 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~c~~ 284 (369)
+ |..+..+++|++|++++| .++.+|.. +.+|+++++.+++-
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 5 678889999999999998 57777652 23688888888754
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=6.2e-25 Score=204.27 Aligned_cols=240 Identities=24% Similarity=0.253 Sum_probs=204.9
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
.+.++.++.. +..+|..+. +++.|+++++.++.++ ..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 45 ~~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCC-CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCC-cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 5678888766 889998766 9999999999998776 578999999999999987766666788999999999999986
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCCCCCcc
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
.....+..+..+++|++|++++|......+..+..+++|+.|++++|+.+..++. .+..+++|++|++++|.++.+| .
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-N 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-C
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-c
Confidence 6555556789999999999998775555555788999999999999887776654 5788999999999999999887 4
Q ss_pred ccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCCccch-hhccCCCCC
Q 017559 178 IVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLR 254 (369)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~ 254 (369)
+..+++|++|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 78899999999999996655 56788999999999999999984 5568889999999999999997774 457899999
Q ss_pred Eecccccc
Q 017559 255 WLYLVNCV 262 (369)
Q Consensus 255 ~L~l~~~~ 262 (369)
.|++++|+
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99999885
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.6e-25 Score=199.83 Aligned_cols=209 Identities=28% Similarity=0.451 Sum_probs=185.3
Q ss_pred CCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEe
Q 017559 62 LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLK 141 (369)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 141 (369)
.++++.|++++|... .+|..+.++++|++|++++|... .+|..+..+++|++|++++|... .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999997654 77888888999999999997665 88988999999999999977644 7888899999999999
Q ss_pred ecCCCCCCCCCcccCC---------CcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEec
Q 017559 142 LTGCTKLGSLPESLGN---------LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLEL 212 (369)
Q Consensus 142 l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 212 (369)
+++|+..+.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|....+|..+..+++|++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 9999888888876654 8999999999999999999999999999999999998888888899999999999
Q ss_pred cCCCCcc-CCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCCCCEeccccccccccCCCcCcc
Q 017559 213 GDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPELPLL 273 (369)
Q Consensus 213 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 273 (369)
++|.+.+ ++..+..+++|++|++++|.+. .+|..+..+++|++|++++|..+..+|.....
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 9998877 7778899999999999998665 88888999999999999999888888875433
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.1e-24 Score=194.98 Aligned_cols=267 Identities=18% Similarity=0.200 Sum_probs=209.0
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++.+|..+ .+++++|++++|. +..++. .+. +|++|+++++.++.+ +..+..+++|++|++++|... .+|..
T Consensus 44 ~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 120 (332)
T 2ft3_A 44 GLKAVPKEI-SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN 120 (332)
T ss_dssp CCSSCCSCC-CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred CccccCCCC-CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence 467788766 5789999999998 666643 443 999999999999876 667999999999999997654 56654
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceeccccccccc--ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+ +|+.|++++|. +..+|..+. ++
T Consensus 121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~ 194 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ET 194 (332)
T ss_dssp CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SS
T ss_pred cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CC
Confidence 44 899999999987665556678999999999999877642 445666666 99999999965 455665443 78
Q ss_pred hhhhccCcccCCCCC-ccccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCC
Q 017559 161 LERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++|++++|.+..++ ..+..+++|++|++++|....++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 999999999999776 578889999999999999776664 788899999999999999999998999999999999999
Q ss_pred CCCccchh-hcc------CCCCCEeccccccccc-cCC-C---cCcccceecccCCc
Q 017559 239 NIESLPTS-ISQ------LSRLRWLYLVNCVKLQ-SLP-E---LPLLLVMLGASDCK 283 (369)
Q Consensus 239 ~l~~~~~~-~~~------~~~L~~L~l~~~~~l~-~~~-~---~~~~L~~L~l~~c~ 283 (369)
.++.++.. +.. .++|+.|++++|+... .++ . ..++|+.+++.+++
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99977643 322 4679999999996321 222 1 22456666665543
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=216.55 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=91.1
Q ss_pred CccCCC-Cc-CCCCccEEecCCCCCccccC-CccC---CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccch
Q 017559 9 LRCFPQ-NI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~-~~-~~~~L~~L~l~~~~~~~~~~-~~~~---~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
++.++. .+ .+++|++|++++|. +..++ ..+. +|++|+++++.++.++ ..+..+++|++|++++|......+.
T Consensus 40 l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 118 (570)
T 2z63_A 40 LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118 (570)
T ss_dssp CCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred cCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc
Confidence 555554 33 78888888888887 66654 3333 8888888888887665 4677888888888888654433333
Q ss_pred hhccCCcCcEEecCCCcCcc-cCchhhhccCccceecccccccccccchhhhcccCC----CeEeecCC
Q 017559 82 SICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL----KQLKLTGC 145 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~ 145 (369)
.++++++|++|++++|.... .+|..+.++++|++|++++|......+..+..+++| +.+++++|
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 47778888888888876554 367778888888888888765544444445555554 44554443
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=8.5e-25 Score=204.04 Aligned_cols=240 Identities=27% Similarity=0.258 Sum_probs=204.2
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
...++.++.. +..+|..++ ++++|+++++.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 56 ~~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCC-cCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 5678887766 888987665 999999999999876 4578999999999999987766666788999999999999987
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCCCCCcc
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
.....+..+..+++|++|++++|......+..+.++++|+.|++++|+.++.++. .+..+++|+.|++++|.+..++ .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 6655556788999999999998775554555788999999999999887777664 4788999999999999999885 4
Q ss_pred ccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCCccch-hhccCCCCC
Q 017559 178 IVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLR 254 (369)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~ 254 (369)
+..+++|++|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 77899999999999996655 56788999999999999999884 5568889999999999999997774 457899999
Q ss_pred Eecccccc
Q 017559 255 WLYLVNCV 262 (369)
Q Consensus 255 ~L~l~~~~ 262 (369)
.|++++|+
T Consensus 294 ~L~L~~Np 301 (452)
T 3zyi_A 294 ELHLHHNP 301 (452)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 99999985
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2e-25 Score=204.40 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=207.9
Q ss_pred CccCCCCc--CCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccch
Q 017559 9 LRCFPQNI--HFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~~~--~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
++.+|... .+++|++|++++|. +..++. .+. +|++|+++++.++.++ ..+..+++|++|++++|... .+|.
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 134 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCH
Confidence 56677754 78999999999998 666653 333 8999999999998775 45788999999999997655 4454
Q ss_pred -hhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCC-------------
Q 017559 82 -SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK------------- 147 (369)
Q Consensus 82 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------- 147 (369)
.+.++++|++|++++|......+..+..+++|++|++++|..... + +..+++|+.+++++|..
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~ 211 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELD 211 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSCSEEE
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcceEEE
Confidence 468899999999999877666677788999999999997764432 2 33445555555544321
Q ss_pred -----CCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccCC
Q 017559 148 -----LGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIP 221 (369)
Q Consensus 148 -----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 221 (369)
+..++. ...++|+.|++++|.++.. ..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.+++
T Consensus 212 l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 212 ASHNSINVVRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp CCSSCCCEEEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred CCCCeeeeccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC
Confidence 222221 2346899999999999876 5788899999999999996554 667889999999999999999988
Q ss_pred CCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCC-CcCcccceecccCCc
Q 017559 222 PDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-ELPLLLVMLGASDCK 283 (369)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~ 283 (369)
.....+++|++|++++|.++.+|..+..+++|++|++++|. ++.++ ...++|++|++++++
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 77888999999999999999999889999999999999994 55554 244677888887764
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.4e-24 Score=201.75 Aligned_cols=267 Identities=24% Similarity=0.321 Sum_probs=194.2
Q ss_pred CCCCCCCCccCCCCcCCCCccEEecCCCCCccccCCcc--CCeeEEEcCCccccccCcccCCCCCCCEEeCcCccccccc
Q 017559 2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRL 79 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 79 (369)
++.+| .++.+|+...+++|++|++++|. +..++... .+|++|+++++.++.++. +..+++|++|++++|.... +
T Consensus 74 ~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~ 149 (466)
T 1o6v_A 74 NFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-I 149 (466)
T ss_dssp ECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-C
T ss_pred ECCCC-ccCCchhhhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-C
Confidence 34444 35666664478888888888887 56555422 288888888888877665 7778888888887765332 1
Q ss_pred c--------------------hhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCe
Q 017559 80 S--------------------TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQ 139 (369)
Q Consensus 80 ~--------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 139 (369)
+ ..+.++++|++|++++|... .+ ..+..+++|++|++++|......+ +..+++|+.
T Consensus 150 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 225 (466)
T 1o6v_A 150 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225 (466)
T ss_dssp GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCE
Confidence 1 12566788888888887543 33 347889999999999776444333 667889999
Q ss_pred EeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCcc
Q 017559 140 LKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 140 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (369)
|++++|.. ..++ .+..+++|+.|++++|.+...+. +..+++|++|++++|....++. +..+++|+.|++++|.+.+
T Consensus 226 L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 226 LSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED 301 (466)
T ss_dssp EECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred EECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence 99988653 3343 47778888999998888887655 7778888999998888766665 6778888888888888887
Q ss_pred CCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCC--cCcccceecccCCc
Q 017559 220 IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDCK 283 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~ 283 (369)
++. +..+++|++|++++|.++.++. +..+++|+.|++++| .++.++. ..++|+.|++++|+
T Consensus 302 ~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 302 ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 654 6778888888888888886654 678888888888887 5555543 23677888887764
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=7e-25 Score=194.08 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=183.4
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCcc-cCCCCCCCEEeCcCccccc--ccchhhccCCcCcEEecCCC
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~ 97 (369)
+.++++++. ++.+|..+. ++++|+++++.++.++.. +..+++|++|++++|.... ..+..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~-l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCC-cccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 467888776 888887555 999999999999888764 6889999999999876543 23556677899999999987
Q ss_pred cCcccCchhhhccCccceecccccccccccc-hhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC--C
Q 017559 98 INLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ--A 174 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~ 174 (369)
.. ..++..+..+++|++|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++|.+.. .
T Consensus 89 ~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 54 4566678889999999999766544332 467788899999998876655566667788888888888888764 6
Q ss_pred CccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEcCCCCCCc-cchhhccCC
Q 017559 175 PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIES-LPTSISQLS 251 (369)
Q Consensus 175 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~ 251 (369)
+..+..+++|++|++++|....+ +..+..+++|++|++++|.+.+++. .+..+++|++|++++|.++. .+..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 67778888888888888886555 5567778888888888888887544 46777888888888888874 445566664
Q ss_pred -CCCEecccccc
Q 017559 252 -RLRWLYLVNCV 262 (369)
Q Consensus 252 -~L~~L~l~~~~ 262 (369)
+|++|++++|+
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 78888888874
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=7.4e-25 Score=197.87 Aligned_cols=279 Identities=18% Similarity=0.148 Sum_probs=219.7
Q ss_pred CCCCccEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEec
Q 017559 17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (369)
.++.....+.+++. ++.+|..+. +|++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++
T Consensus 29 ~C~~~~~c~~~~~~-l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EECTTSEEECCSTT-CSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCeEeeCCCCC-cccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 56666778888877 888987655 99999999999998876 6889999999999998766665677889999999999
Q ss_pred CCCcCcccCchhhhccCccceecccccccccccch--hhhcccCCCeEeecCCCCCCCC-CcccCCCcchhhhccCcccC
Q 017559 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHAGLLAI 171 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 171 (369)
++|......+..+..+++|++|++++|... .++. .+..+++|+.|++++|...+.+ +..+..+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 997665544455889999999999977544 4544 6788999999999998655554 45688999999999999998
Q ss_pred CCC-CccccCCCCCcEEEeccCCCcCCCcc-cCCCCCCcEEeccCCCCccCCCC----CCCCCCCCEEEcCCCCCC----
Q 017559 172 PQA-PSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPD----IGCLSSLESLNLSGNNIE---- 241 (369)
Q Consensus 172 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~l~---- 241 (369)
... +..+..+++|++|++++|....++.. +..+++|+.|++++|.+.+.+.. ......++.+++.++.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 865 67788899999999999987666653 34578999999999998874321 234667888888888776
Q ss_pred -ccchhhccCCCCCEeccccccccccCCC----cCcccceecccCCcccccCCCchhhhHHhhHHH
Q 017559 242 -SLPTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCKRLQFLPELTSCLEELDASI 302 (369)
Q Consensus 242 -~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~ 302 (369)
.+|..+..+++|++|++++| .++.+|. ..++|++|++++++ +...++.++.+..+.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~----~~~~~~~l~~l~~~~ 327 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP----WDCSCPRIDYLSRWL 327 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC----BCCCHHHHHHHHHHH
T ss_pred hhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC----ccCcCCCcHHHHHHH
Confidence 46777889999999999998 6777765 23678999998875 334455677766554
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=209.52 Aligned_cols=141 Identities=19% Similarity=0.133 Sum_probs=112.1
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccch
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
.+++++|..+ .+++++|++++|. +..++. .+. +|++|+++++.++.++ ..+..+++|++|++++|......+.
T Consensus 17 ~~l~~ip~~l-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 17 LNFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SCCSSCCSSS-CSSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCCCc-cccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 3567788755 4679999999998 666653 333 9999999999998775 4688999999999999876666567
Q ss_pred hhccCCcCcEEecCCCcCcccCchhhhccCccceeccccccccc-ccchhhhcccCCCeEeecCCCCCC
Q 017559 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLG 149 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 149 (369)
.+.++++|++|++++|......+..++.+++|++|++++|.... .+|..+.++++|++|++++|....
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 88999999999999976544434468899999999999876555 468889999999999999876543
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.8e-24 Score=199.05 Aligned_cols=266 Identities=26% Similarity=0.252 Sum_probs=146.4
Q ss_pred CccCCCCcCCCCccEEecCCCCCccccCCccCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCc
Q 017559 9 LRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS 88 (369)
Q Consensus 9 l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (369)
++.+|.. .++|++|++++|. +..+|....+|++|+++++.++.++.. .++|++|++++|... .+| .++++++
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~ 154 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSF 154 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred cccCCCC--cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCC
Confidence 5555552 3567777777766 555666556777777766666655432 156777777776544 355 3666777
Q ss_pred CcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCc
Q 017559 89 LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL 168 (369)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (369)
|++|++++|... .+|.. ..+|++|++++|.. ..+| .+.++++|+.|++++|.. ..+|.. .++|++|++++
T Consensus 155 L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCc-ccCCC---cccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcC
Confidence 777777775433 34432 24667777775543 3344 456666777777766543 223322 23566666666
Q ss_pred ccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhh-
Q 017559 169 LAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI- 247 (369)
Q Consensus 169 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~- 247 (369)
|.+..+|. +..+++|++|++++|....+|.. .++|+.|++++|.+.+++.. +++|++|++++|.++.++...
T Consensus 225 n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 225 NILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp SCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred CcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCC
Confidence 66665553 55666666666666665555542 25566666666666554432 245555666555555433210
Q ss_pred ---------------ccC-CCCCEeccccccccccCCCcCcccceecccCCcccccCCCchhhhHHhhHH
Q 017559 248 ---------------SQL-SRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301 (369)
Q Consensus 248 ---------------~~~-~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~ 301 (369)
..+ ++|++|++++| .++.+|..+++|++|++++| .++.++...++++.|++.
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~ 365 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVE 365 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECC
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccccCCcCCEEECCCC-ccccccchhhhccEEECC
Confidence 011 34555555554 34444444455555555554 344444433444444443
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=215.98 Aligned_cols=294 Identities=18% Similarity=0.166 Sum_probs=224.0
Q ss_pred CCCCCCCccC-CCCc-CCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCccc
Q 017559 3 MAGCESLRCF-PQNI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 3 l~~c~~l~~~-p~~~-~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~ 75 (369)
+.++. ++.+ |..+ .+++|++|++++|.....+ |..+. +|++|++++|.+..+ |..+..+++|++|++++|..
T Consensus 31 Ls~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 31 LSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred CCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 44443 5554 4444 8999999999999767777 44444 999999999999866 77899999999999999887
Q ss_pred ccccchh--hccCCcCcEEecCCCcCcccCc-hhhhccCccceecccccccccccchhhhcc--cCCCeEeecCCCCCCC
Q 017559 76 LKRLSTS--ICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENL--EGLKQLKLTGCTKLGS 150 (369)
Q Consensus 76 ~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~ 150 (369)
....+.. +.++++|++|++++|......+ ..++++++|++|++++|......+..+..+ ++|+.|++++|.....
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence 7655554 8889999999999987665543 678999999999999887666667777766 8999999999887777
Q ss_pred CCcccCCCcc------hhhhccCcccCCC-CCccc------------------------------------cC--CCCCc
Q 017559 151 LPESLGNLKS------LERLHAGLLAIPQ-APSSI------------------------------------VD--LNKLE 185 (369)
Q Consensus 151 ~~~~~~~l~~------L~~L~l~~~~~~~-~~~~~------------------------------------~~--~~~L~ 185 (369)
.+..+..+++ |+.|++++|.+.. .+..+ .. .++|+
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence 7666666655 9999999986541 11111 11 26799
Q ss_pred EEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCCcc-chhhccCCCCCEecccccc
Q 017559 186 TLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 186 ~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~ 262 (369)
.|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N- 348 (844)
T 3j0a_A 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN- 348 (844)
T ss_dssp EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-
T ss_pred EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-
Confidence 999999885544 45778899999999999999884 55688899999999999998855 567889999999999998
Q ss_pred ccccCCC----cCcccceecccCCcccccCCCchhhhHHhhH
Q 017559 263 KLQSLPE----LPLLLVMLGASDCKRLQFLPELTSCLEELDA 300 (369)
Q Consensus 263 ~l~~~~~----~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~ 300 (369)
.+..++. ..++|+.|+++++. ++.++. .++++.+++
T Consensus 349 ~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~L~~L~l 388 (844)
T 3j0a_A 349 HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF-IPSIPDIFL 388 (844)
T ss_dssp CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-CCSCSEEEE
T ss_pred CCCccChhhhcCCCCCCEEECCCCC-CCcccC-CCCcchhcc
Confidence 5666553 24678999988763 443332 334444443
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=8.3e-25 Score=191.60 Aligned_cols=217 Identities=24% Similarity=0.274 Sum_probs=119.6
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcC
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (369)
+.++.+++. +..+|.... ++++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSC-CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCC-cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 466666655 666665443 77777777777776553 466677777777777655544455666677777777777652
Q ss_pred ccc-CchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc
Q 017559 100 LES-FPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI 178 (369)
Q Consensus 100 ~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 178 (369)
... .+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.++.++..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER- 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-
Confidence 333 355566666666666665544433344455555666666655443322222344444444444444444433321
Q ss_pred cCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEe
Q 017559 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWL 256 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L 256 (369)
.+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.++ ..+..+++|++|
T Consensus 172 ---------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 172 ---------------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp ---------------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred ---------------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 244455555555555555442 344455555555555555555444 234555555555
Q ss_pred ccccc
Q 017559 257 YLVNC 261 (369)
Q Consensus 257 ~l~~~ 261 (369)
++++|
T Consensus 231 ~l~~N 235 (285)
T 1ozn_A 231 RLNDN 235 (285)
T ss_dssp ECCSS
T ss_pred eccCC
Confidence 55555
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-24 Score=209.70 Aligned_cols=249 Identities=18% Similarity=0.161 Sum_probs=190.6
Q ss_pred CccCCCCc--CCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccch
Q 017559 9 LRCFPQNI--HFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~~~--~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
++.+|... .+++|++|++++|. +..++. .+. +|++|+++++.++.++. .++.+++|++|++++|......+.
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 45566654 67888888888887 555543 333 88888888888886654 467888888888888765533334
Q ss_pred hhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhc----------------------------
Q 017559 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIEN---------------------------- 133 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------- 133 (369)
.++++++|++|++++|......+..+..+++|++|++++|.........+.+
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 4578888888888887766666677888888888888876543321111111
Q ss_pred ---------ccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CccccCCCCCcEEEeccCCCcCCCcccCC
Q 017559 134 ---------LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPPLLSG 203 (369)
Q Consensus 134 ---------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 203 (369)
.++|+.|++++|.... +..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|....+|..+..
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 299 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence 1235555555543322 24578899999999999999865 66888999999999999998888887888
Q ss_pred CCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEecccccc
Q 017559 204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
+++|+.|++++|.+..+|..+..+++|++|++++|.++.++ +..+++|+.|++++|+
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 99999999999999998888888999999999999999775 6788999999999985
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=7.6e-25 Score=197.79 Aligned_cols=253 Identities=19% Similarity=0.189 Sum_probs=206.2
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccch
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
.+++++|..+ .++|++|++++|. +..++. .+. +|++|+++++.++.++ ..+..+++|++|++++|......+.
T Consensus 41 ~~l~~iP~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 41 GSLNSIPSGL-TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TTCSSCCTTC-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCcccccccc-cccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 4577888766 4689999999998 777765 333 9999999999998775 4689999999999999876544444
Q ss_pred hhccCCcCcEEecCCCcCcccCch--hhhccCccceeccccccccccc-chhhhcccCCCeEeecCCCCCCCCCcccCCC
Q 017559 82 SICKLKSLRSLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNL 158 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 158 (369)
.++++++|++|++++|... .++. .+..+++|++|++++|...+.+ +..+.++++|+.|++++|......+..+..+
T Consensus 119 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 5889999999999997654 4554 7889999999999988655544 5678899999999999987766667889999
Q ss_pred cchhhhccCcccCCCCCccc-cCCCCCcEEEeccCCCcCCCc----ccCCCCCCcEEeccCCCCcc-----CCCCCCCCC
Q 017559 159 KSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLVLPP----LLSGLSSLKKLELGDCEIME-----IPPDIGCLS 228 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~ 228 (369)
++|++|++++|.+..++..+ ..+++|+.|++++|.....+. .......++.++++++.+.+ ++..+..++
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 99999999999988776543 358999999999998655442 22345678899999888765 555678899
Q ss_pred CCCEEEcCCCCCCccchhh-ccCCCCCEecccccc
Q 017559 229 SLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCV 262 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~ 262 (369)
+|++|++++|.++.+|..+ ..+++|++|++++|+
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 9999999999999999775 899999999999995
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=5.3e-24 Score=208.76 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=92.0
Q ss_pred CccCCCC-c-CCCCccEEecCCCCCcccc-CCccC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccch
Q 017559 9 LRCFPQN-I-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~~-~-~~~~L~~L~l~~~~~~~~~-~~~~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
++.+|.. + .+++|++|++++|. +..+ |..+. +|++|+++++.++.+|. .++.+++|++|++++|......+.
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 5566653 3 77888888888877 4444 33332 78888888777777775 477788888888888765544445
Q ss_pred hhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhh--cccCCCeEeecCCCCC
Q 017559 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE--NLEGLKQLKLTGCTKL 148 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 148 (369)
.++++++|++|++++|......+..+..+++|++|++++|...+..+..+. .+++|+.|++++|...
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 677788888888887766555566667777777777776654433333332 3466677777665443
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=6.8e-23 Score=190.65 Aligned_cols=250 Identities=23% Similarity=0.215 Sum_probs=182.0
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCCccCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCC
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK 87 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 87 (369)
.++.+|.. +++|++|++++|. +..++....+|++|+++++.++.+| .++.+++|++|++++|... .+|.. ..
T Consensus 102 ~l~~lp~~--~~~L~~L~l~~n~-l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~ 173 (454)
T 1jl5_A 102 SLTELPEL--PQSLKSLLVDNNN-LKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PP 173 (454)
T ss_dssp CCSSCCCC--CTTCCEEECCSSC-CSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC---CT
T ss_pred cCCccccc--cCCCcEEECCCCc-cCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC---cc
Confidence 35556653 4789999999987 7788777679999999999999888 4889999999999997654 45543 35
Q ss_pred cCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017559 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
+|++|++++|... .+| .++.+++|++|++++|... .+|.. .++|+.|++++|. +..+| .++.+++|++|+++
T Consensus 174 ~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNNI-LEELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECC
T ss_pred cccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCC-cCCCC---cCcccEEECcCCc-CCccc-ccCCCCCCCEEECC
Confidence 8999999987544 456 5788999999999876543 34432 2578888888864 44666 37788888888888
Q ss_pred cccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCC---C-------------CC-CCCC
Q 017559 168 LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD---I-------------GC-LSSL 230 (369)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-------------~~-~~~L 230 (369)
+|.+..+|.. +++|++|++++|....+|.. .++|+.|++++|.+.+++.. + .. .++|
T Consensus 246 ~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L 319 (454)
T 1jl5_A 246 NNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319 (454)
T ss_dssp SSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred CCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence 8888776653 36777777777776555543 24566666666655542211 0 11 2578
Q ss_pred CEEEcCCCCCCccchhhccCCCCCEeccccccccccCCCcCcccceecccCCc
Q 017559 231 ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCK 283 (369)
Q Consensus 231 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~ 283 (369)
++|++++|.++.+|.. +++|++|++++| .++.+|..+++|++|++++++
T Consensus 320 ~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 320 EELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP 368 (454)
T ss_dssp CEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC
T ss_pred CEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCCC
Confidence 8888888888877653 588999999988 677888777889999998874
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=3.5e-24 Score=189.62 Aligned_cols=232 Identities=21% Similarity=0.256 Sum_probs=193.4
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCccccCCc-cC---CeeEEEcCCcccccc---CcccCCCCCCCEEeCcCccccccc
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEV---PLSIECLPNLETLEMSFCNSLKRL 79 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~-~~---~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~ 79 (369)
.+++++|..+ .+++++|++++|. +..++.. +. +|++|+++++.++.+ +..+..+++|++|++++|... .+
T Consensus 17 ~~l~~ip~~~-~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l 93 (306)
T 2z66_A 17 KGLTSVPTGI-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 93 (306)
T ss_dssp SCCSSCCSCC-CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EE
T ss_pred CCcccCCCCC-CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cC
Confidence 3577888766 4789999999998 7788753 33 999999999998754 455667899999999997654 56
Q ss_pred chhhccCCcCcEEecCCCcCcccCc-hhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCC-CCCcccCC
Q 017559 80 STSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG-SLPESLGN 157 (369)
Q Consensus 80 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 157 (369)
+..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|+.|++++|...+ ..+..+..
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 7678889999999999976554433 578899999999999887766777788899999999999976554 46777899
Q ss_pred CcchhhhccCcccCCCC-CccccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCcc-CCCCCCCC-CCCCEE
Q 017559 158 LKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME-IPPDIGCL-SSLESL 233 (369)
Q Consensus 158 l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~-~~L~~L 233 (369)
+++|++|++++|.+..+ +..+..+++|++|++++|....++. .+..+++|+.|++++|.+.+ .+..+..+ ++|++|
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 99999999999999876 5678889999999999999777664 67889999999999999988 45567777 499999
Q ss_pred EcCCCCCC
Q 017559 234 NLSGNNIE 241 (369)
Q Consensus 234 ~l~~~~l~ 241 (369)
++++|.++
T Consensus 254 ~L~~N~~~ 261 (306)
T 2z66_A 254 NLTQNDFA 261 (306)
T ss_dssp ECTTCCEE
T ss_pred EccCCCee
Confidence 99999886
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.9e-23 Score=181.71 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=145.2
Q ss_pred eEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccc
Q 017559 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
++++.+.++++.+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566666666666432 3566777776655444334455666666666666654444344555555555555555444
Q ss_pred cccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CccccCCCCCcEEEeccCCCcCCCc-c
Q 017559 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-L 200 (369)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~ 200 (369)
.++.+ .+..+..+++|++|++++|.+..+ +..+..+++|++|++++|....++. .
T Consensus 92 ~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 92 QLRSV-----------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TCCCC-----------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred Ccccc-----------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 23222 133344455555555555555544 3446667788888888887666654 4
Q ss_pred cCCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEcCCCCCCcc-chhhccCCCCCEeccccccccccCCC----cCccc
Q 017559 201 LSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLL 274 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L 274 (369)
+..+++|++|++++|.+.+++. .+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.++. ..++|
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCccc
Confidence 7788999999999999988665 488899999999999999965 678899999999999998 6666653 34778
Q ss_pred ceecccCCcc
Q 017559 275 VMLGASDCKR 284 (369)
Q Consensus 275 ~~L~l~~c~~ 284 (369)
++|++++++-
T Consensus 228 ~~L~l~~N~~ 237 (285)
T 1ozn_A 228 QYLRLNDNPW 237 (285)
T ss_dssp CEEECCSSCE
T ss_pred CEEeccCCCc
Confidence 9999988753
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=9.5e-26 Score=200.11 Aligned_cols=240 Identities=17% Similarity=0.115 Sum_probs=181.1
Q ss_pred CCCCccEEecCCCCCccccCCccC-CeeEEEcCCcccc--ccCcccC-------CCCCCCEEeCcCcccccccchhh--c
Q 017559 17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIE--EVPLSIE-------CLPNLETLEMSFCNSLKRLSTSI--C 84 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~--~ 84 (369)
..++|+.+++++|. + .+|..++ .++.|+++++.+. .++..+. .+++|++|++++|.....+|..+ .
T Consensus 41 ~~~~L~~l~l~~n~-l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-E-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCT-T-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeecccc-c-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 45668888888887 4 6666444 6888888888875 3444343 67899999999988776777655 7
Q ss_pred cCCcCcEEecCCCcCcccCchhhhcc-----CccceecccccccccccchhhhcccCCCeEeecCCCCCCC--CCccc--
Q 017559 85 KLKSLRSLDLSYCINLESFPEILEKM-----ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--LPESL-- 155 (369)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-- 155 (369)
.+++|++|++++|..... |..+..+ ++|++|++++|...+..+..+..+++|+.|++++|...+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 889999999998765554 7777776 8899999997776555557788889999999988765443 22233
Q ss_pred CCCcchhhhccCcccCCCCCc----cccCCCCCcEEEeccCCCcCCC--cccCCCCCCcEEeccCCCCccCCCCCCCCCC
Q 017559 156 GNLKSLERLHAGLLAIPQAPS----SIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLELGDCEIMEIPPDIGCLSS 229 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (369)
..+++|++|++++|.+..++. .+..+++|++|++++|.....+ ..+..+++|++|++++|.+..+|..+. ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 778889999999988874432 2346688999999988865543 345567888999999998888877665 78
Q ss_pred CCEEEcCCCCCCccchhhccCCCCCEecccccc
Q 017559 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
|++|++++|.++.+|. +..+++|++|++++|+
T Consensus 276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 8999999998887776 7888888888888873
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=8.4e-23 Score=189.87 Aligned_cols=239 Identities=21% Similarity=0.190 Sum_probs=199.4
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
..+.++.+...++.+|..+. ++++.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46678888888899997554 7899999999877666667899999999999999877666678899999999999998
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-cccCCCCCcEEEeccCCCcCCC
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLETLSLFECRGLVLP 198 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 198 (369)
|......+..+..+++|+.|++++|......+..+..+++|++|+++++ .+..++. .+..+++|++|++++|....+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 7655444457889999999999997655444456889999999999985 4555544 5788999999999999988888
Q ss_pred cccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEeccccccccccCCC----cCc
Q 017559 199 PLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLPE----LPL 272 (369)
Q Consensus 199 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~----~~~ 272 (369)
. +..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.++ ..+..+++|++|++++| .++.++. ..+
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCT
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcccc
Confidence 5 78899999999999999985 667899999999999999999664 56789999999999998 6776664 246
Q ss_pred ccceecccCCc
Q 017559 273 LLVMLGASDCK 283 (369)
Q Consensus 273 ~L~~L~l~~c~ 283 (369)
+|+.|++.+++
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 78999988875
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=7.9e-23 Score=190.70 Aligned_cols=239 Identities=23% Similarity=0.205 Sum_probs=199.3
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
..+.++.++..++.+|..+. +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888887543 6899999999887776678899999999999999877766778899999999999998
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-cccCCCCCcEEEeccCCCcCCC
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLETLSLFECRGLVLP 198 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 198 (369)
|......+..+..+++|+.|++++|......+..+..+++|+.|+++++ .+..++. .+..+++|++|++++|....+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 7755444556888999999999997655444456889999999999984 4555544 5778999999999999988877
Q ss_pred cccCCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEcCCCCCCcc-chhhccCCCCCEeccccccccccCCC----cCc
Q 017559 199 PLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPL 272 (369)
Q Consensus 199 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~ 272 (369)
. +..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.++. ..+
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence 5 77899999999999999984 56688999999999999999965 466789999999999999 6777664 246
Q ss_pred ccceecccCCc
Q 017559 273 LLVMLGASDCK 283 (369)
Q Consensus 273 ~L~~L~l~~c~ 283 (369)
+|+.|++.+++
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 78999998875
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.5e-24 Score=191.34 Aligned_cols=239 Identities=18% Similarity=0.092 Sum_probs=132.6
Q ss_pred CCCCccEEecCCCCCccccC-Ccc---CCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEE
Q 017559 17 HFISSIKIDCYKCVNLREFP-RIS---GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL 92 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~-~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (369)
.+++|++|++++|. +..++ ..+ .+|++|+++++.++.++. +..+++|++|++++|... .++ ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCCEE
T ss_pred cCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc----CCCCcCEE
Confidence 34456666666665 44443 222 266666666666654443 556666666666665432 222 23566666
Q ss_pred ecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCccc-CCCcchhhhccCcccC
Q 017559 93 DLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL-GNLKSLERLHAGLLAI 171 (369)
Q Consensus 93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~ 171 (369)
++++|......+. .+++|++|++++|......+..+..+++|+.|++++|......+..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 6666544332222 24556666666554444334455556666666666654433333333 3456666666666666
Q ss_pred CCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC--ccchhhcc
Q 017559 172 PQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTSISQ 249 (369)
Q Consensus 172 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~ 249 (369)
+.++.. ..+++|++|++++|....++..+..+++|+.|++++|.+..++..+..+++|++|++++|.+. .++..+..
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred cccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 554322 235666666666666555555555666666666666666666655666666666666666665 44555566
Q ss_pred CCCCCEecccccccccc
Q 017559 250 LSRLRWLYLVNCVKLQS 266 (369)
Q Consensus 250 ~~~L~~L~l~~~~~l~~ 266 (369)
+++|+.++++++..++.
T Consensus 261 ~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cccceEEECCCchhccC
Confidence 66666666665544443
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=3.8e-22 Score=193.89 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=79.8
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|..+ .+++++|++++|. ++.++. .+. +|++|++++|.++.++. .|..+++|++|++++|......+..
T Consensus 42 ~l~~vP~~l-p~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 42 NFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CCSSCCSSS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CcCccCCCC-CcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 566777654 3457777777776 666653 222 67777777777766654 4666777777777776543333345
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceeccccccccc-ccchhhhcccCCCeEeecCC
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 145 (369)
|.++++|++|++++|......+..++.+++|++|++++|.... ..+..+..+++|++|++++|
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 6666677777776654443333445666666666666554332 23444555555555555543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.4e-21 Score=187.49 Aligned_cols=243 Identities=22% Similarity=0.221 Sum_probs=168.5
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCccccCCccCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccC
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL 86 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 86 (369)
.+++++|..+. ++|++|++++|. ++.+|..+.+|++|++++|.++.+|. .+++|++|++++|... .+|. .+
T Consensus 50 n~L~~lp~~l~-~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l 120 (622)
T 3g06_A 50 SGLTTLPDCLP-AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA---LP 120 (622)
T ss_dssp SCCSCCCSCCC-TTCSEEEECSCC-CSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC---CC
T ss_pred CCcCccChhhC-CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC---CC
Confidence 34677887664 788888888887 77888866688888888888888776 5688888888886543 4444 46
Q ss_pred CcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhcc
Q 017559 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA 166 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (369)
++|+.|++++|.. ..+|.. +++|++|++++|. ++.++. .+++|+.|++++|. +..+| ..+++|+.|++
T Consensus 121 ~~L~~L~L~~N~l-~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~L 188 (622)
T 3g06_A 121 SGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSV 188 (622)
T ss_dssp TTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEEC
T ss_pred CCcCEEECCCCCC-CcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEEC
Confidence 7888888888653 345543 4788888888664 334443 34577777777744 44455 34577778888
Q ss_pred CcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchh
Q 017559 167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS 246 (369)
Q Consensus 167 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 246 (369)
++|.++.++.. .++|+.|++++|....+|.. +++|+.|++++|.+..++ ..+++|++|++++|.++.+|.
T Consensus 189 s~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 189 SDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence 88877776653 36777777777776666643 367777777777777766 345677777777777777765
Q ss_pred hccCCCCCEeccccccccccCCCc---CcccceecccCCc
Q 017559 247 ISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDCK 283 (369)
Q Consensus 247 ~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c~ 283 (369)
.+++|++|++++| .++.+|.. .++|+.|++++++
T Consensus 259 --~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred --ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 5677777777777 56666542 2456666666654
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=2.9e-23 Score=184.52 Aligned_cols=264 Identities=17% Similarity=0.154 Sum_probs=143.0
Q ss_pred CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceeccc
Q 017559 41 NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 119 (369)
+|++|+++++.++.++ ..+..+++|++|++++|......+ +..+++|++|++++|... .++ ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc----CCCCcCEEECC
Confidence 6677777666666554 356666677777776655443322 566667777777665432 222 33666666666
Q ss_pred ccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-ccc-cCCCCCcEEEeccCCCcCC
Q 017559 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSI-VDLNKLETLSLFECRGLVL 197 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~ 197 (369)
+|......+. .+++|+.|++++|......+..+..+++|++|++++|.+..++ ..+ ..+++|++|++++|....+
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 5543332221 2456666666665444333344555666666666666665432 222 2456666666666665444
Q ss_pred CcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCCcCccccee
Q 017559 198 PPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVML 277 (369)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L 277 (369)
+. ...+++|++|++++|.+.+++..+..+++|++|++++|.++.+|..+..+++|++|++++|+..
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~------------- 250 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH------------- 250 (317)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB-------------
T ss_pred cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc-------------
Confidence 33 2235566666666666666555555566666666666666666655556666666666665311
Q ss_pred cccCCcccccCCCchhhhHHhhHHHHHhhhccccccccCCCCCcEEEecCccCcCh
Q 017559 278 GASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNE 333 (369)
Q Consensus 278 ~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~~ 333 (369)
|..+.......+.++.+++..+..++........ ........-..|..++.
T Consensus 251 ----~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~-~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 251 ----CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT-VPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp ----HHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS-STTCEEETTEEEBCCTT
T ss_pred ----CcCHHHHHhccccceEEECCCchhccCCchhccC-CCceecccceeeccCCh
Confidence 0011111223467788888877777643322221 11122222345777764
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3.9e-21 Score=184.39 Aligned_cols=237 Identities=26% Similarity=0.268 Sum_probs=195.6
Q ss_pred CCccEEecCCCCCccccCCccC-CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 19 ISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
.+++.|+++++. ++.+|..++ +|++|++++|.++.+|. .+++|++|++++|.. ..+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCC-cCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCC
Confidence 358999999998 889987655 99999999999998887 578999999999864 45665 6899999999997
Q ss_pred cCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc
Q 017559 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
.. ..+|. .+++|++|++++|. ++.+|.. +++|+.|++++|. +..++. .+++|+.|++++|.++.++
T Consensus 112 ~l-~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 112 PL-THLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CC-CCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred cC-CCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence 54 44555 67899999999765 4556553 5899999999975 445554 3568999999999999987
Q ss_pred ccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEec
Q 017559 178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257 (369)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 257 (369)
..+++|+.|++++|....+|.. .++|+.|++++|.+..++.. +++|++|++++|.++.+| ..+++|+.|+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~ 247 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELM 247 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEE
Confidence 4578999999999998877753 47899999999999988753 489999999999999888 4678999999
Q ss_pred cccccccccCCCcCcccceecccCCcccccCC
Q 017559 258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 258 l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~ 289 (369)
+++| .++.+|..+++|+.|++++| .+..++
T Consensus 248 Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 248 VSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CCSS-CCSCCCCCCTTCCEEECCSS-CCCSCC
T ss_pred CCCC-CCCcCCcccccCcEEeCCCC-CCCcCC
Confidence 9999 78889888889999999887 444444
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=8.9e-22 Score=171.44 Aligned_cols=214 Identities=21% Similarity=0.230 Sum_probs=122.5
Q ss_pred EecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcc
Q 017559 24 IDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE 101 (369)
Q Consensus 24 L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 101 (369)
.+..+.. +..+|..++ ++++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++++|....
T Consensus 12 ~~c~~~~-l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSC-CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCC-ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3444433 555665444 56666666666665544 45666666666666654443333455566666666666654444
Q ss_pred cCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC--CCcccc
Q 017559 102 SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ--APSSIV 179 (369)
Q Consensus 102 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~ 179 (369)
..+..+..+++|++|++++|.... ..+..+..+++|++|++++|.+.. +|..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLAS------------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCC------------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cChhhhcCCccccEEECCCCCccc------------------------cCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 344445555555555555443322 222234445555555555555543 345566
Q ss_pred CCCCCcEEEeccCCCcCCC-cccCCCCCCc----EEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchh-hccCCCC
Q 017559 180 DLNKLETLSLFECRGLVLP-PLLSGLSSLK----KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS-ISQLSRL 253 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L 253 (369)
.+++|++|++++|....++ ..+..+++|+ .|++++|.+..++.......+|++|++++|.++.++.. +..+++|
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 6666666666666644443 2333333444 67777777777655555555778888888877766643 4667778
Q ss_pred CEecccccc
Q 017559 254 RWLYLVNCV 262 (369)
Q Consensus 254 ~~L~l~~~~ 262 (369)
++|++++|+
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 888887774
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.3e-21 Score=170.51 Aligned_cols=212 Identities=20% Similarity=0.163 Sum_probs=152.6
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|..+ .+++++|++++|. +..++. .+. +|++|+++++.++.++. .+..+++|++|++++|......+..
T Consensus 18 ~l~~ip~~l-~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 18 NFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSCCSSS-CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCC-CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 455678765 3679999999998 676664 333 99999999999987765 6889999999999998776666677
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceeccccccccc-ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcch
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (369)
+.++++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|+.|++++|......+..+..++++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 8999999999999987665555568888999999998776544 356777778888888887765433222222222222
Q ss_pred hhhccCcccCCCCCccccCCCCCc-EEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEcCCCC
Q 017559 162 ERLHAGLLAIPQAPSSIVDLNKLE-TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNN 239 (369)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 239 (369)
+ .+. +|++++|....++.......+|+.|++++|.+.+++.. +..+++|++|++++|.
T Consensus 176 ~--------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 176 P--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp T--------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred c--------------------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 2 222 56666666555554444445777888888877776544 4677888888888886
Q ss_pred CC
Q 017559 240 IE 241 (369)
Q Consensus 240 l~ 241 (369)
+.
T Consensus 236 ~~ 237 (276)
T 2z62_A 236 WD 237 (276)
T ss_dssp BC
T ss_pred cc
Confidence 65
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.7e-23 Score=192.97 Aligned_cols=231 Identities=17% Similarity=0.086 Sum_probs=149.5
Q ss_pred CCCccEEecCCCCCccccC-CccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEe
Q 017559 18 FISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD 93 (369)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~-~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 93 (369)
+++|++|++++|. +..++ ..+. +|++|++++|.++..+. +..+++|++|++++|... .++ ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE----ECTTCCEEE
T ss_pred CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC----CCCCcCEEE
Confidence 4467777777776 44443 3333 77777777777765444 667777777777776432 222 236777777
Q ss_pred cCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccC-CCcchhhhccCcccCC
Q 017559 94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG-NLKSLERLHAGLLAIP 172 (369)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~ 172 (369)
+++|......+. .+++|++|++++|...+..+..+..+++|+.|++++|...+..+..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 777654443332 356777777776655555555666777777777777655544444443 5677777777777776
Q ss_pred CCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC--ccchhhccC
Q 017559 173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTSISQL 250 (369)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~ 250 (369)
.++. ...+++|+.|++++|....+|..+..+++|+.|++++|.+.++|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 5533 2346777777777777666666666677777777777777777666667777777777777766 555666666
Q ss_pred CCCCEeccc
Q 017559 251 SRLRWLYLV 259 (369)
Q Consensus 251 ~~L~~L~l~ 259 (369)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 666666665
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.4e-21 Score=189.82 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=119.2
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcC
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (369)
++.+.++-. +..||..++ ++++|++++|.++.++. .|..+++|++|++++|......+.+|.++++|++|++++|..
T Consensus 34 ~~~~c~~~~-l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 34 ITYQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp TEEECTTSC-CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CEEECCCCC-cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 355666555 889998776 99999999999998875 699999999999999876655566789999999999999876
Q ss_pred cccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCC-CCCcccCCCcchhhhccCcccC
Q 017559 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLAI 171 (369)
Q Consensus 100 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 171 (369)
....+..|..+++|++|++++|......+..+.++++|++|++++|.... ..|..++.+++|++|++++|.+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 55555778999999999999886554444568899999999999976543 3456667777777777766544
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.6e-23 Score=185.84 Aligned_cols=235 Identities=19% Similarity=0.165 Sum_probs=185.0
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccc-cccchhhc-------cCCcCcEEecCCCcCcccCchhh--hcc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSL-KRLSTSIC-------KLKSLRSLDLSYCINLESFPEIL--EKM 110 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~--~~l 110 (369)
+|+.|+++++.+ .+|..+... |+.|++++|... ..++..+. ++++|++|++++|......|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 677778888887 677654433 888899987763 34555444 68999999999988777777765 899
Q ss_pred Cccceecccccccccccchhhhcc-----cCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC---CCccc--cC
Q 017559 111 ELLEEINLEEASNIKELPSSIENL-----EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ---APSSI--VD 180 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~--~~ 180 (369)
++|++|++++|...+. |..+..+ ++|++|++++|......+..++.+++|++|++++|.+.+ ++..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 9999999998765544 7777776 899999999987766666789999999999999998653 23333 77
Q ss_pred CCCCcEEEeccCCCcCCC----cccCCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEcCCCCCCccchhhccCCCCC
Q 017559 181 LNKLETLSLFECRGLVLP----PLLSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPTSISQLSRLR 254 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 254 (369)
+++|++|++++|....++ ..+..+++|++|++++|.+.+.+ ..+..+++|++|++++|.++.+|..+. ++|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 899999999999976443 23457789999999999998844 345668999999999999999987766 8999
Q ss_pred EeccccccccccCCC--cCcccceecccCC
Q 017559 255 WLYLVNCVKLQSLPE--LPLLLVMLGASDC 282 (369)
Q Consensus 255 ~L~l~~~~~l~~~~~--~~~~L~~L~l~~c 282 (369)
+|++++| .++.+|. ..++|++|+++++
T Consensus 278 ~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 278 VLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred EEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 9999998 6776655 2366777777765
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.3e-20 Score=161.89 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=35.7
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
.+.++++++. +..+|..++ ++++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++++|
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555554 445554333 55555555555554443 3445555555555554333222222344445555555444
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.6e-20 Score=161.59 Aligned_cols=199 Identities=20% Similarity=0.256 Sum_probs=167.0
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+.++++++++.++.+|..+. +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 57789999999999987553 6899999999876655455788999999999999866554456678999999999998
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-ccCCCCCcEEEeccCCCcCCCc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IVDLNKLETLSLFECRGLVLPP 199 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 199 (369)
|......+..+..+++|+.|++++|......+..+..+++|++|++++|.+..++.. +..+++|++|++++|....++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 765554455678899999999999776655556688999999999999999988764 7889999999999999777775
Q ss_pred -ccCCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEcCCCCCC
Q 017559 200 -LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 200 -~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~ 241 (369)
.+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 578899999999999999987654 778999999999999765
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.4e-21 Score=183.47 Aligned_cols=211 Identities=18% Similarity=0.167 Sum_probs=154.4
Q ss_pred CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceeccc
Q 017559 41 NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 119 (369)
+|++|+++++.++.++ ..+..+++|++|++++|......+ +..+++|++|++++|... .++ ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcCEEECc
Confidence 7888888888887664 467888888888888876554433 777888888888886433 333 23788888888
Q ss_pred ccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-Ccccc-CCCCCcEEEeccCCCcCC
Q 017559 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIV-DLNKLETLSLFECRGLVL 197 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~ 197 (369)
+|......+. .+++|+.|++++|......+..++.+++|+.|++++|.+... +..+. .+++|+.|++++|....+
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7654443332 457788888888766555566677788888888888887753 34443 578888888888886655
Q ss_pred CcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEecccccc
Q 017559 198 PPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
+. ...+++|+.|++++|.+.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 44 33577888888888888887766777888888888888888888777778888888888774
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=6e-24 Score=198.89 Aligned_cols=221 Identities=20% Similarity=0.201 Sum_probs=107.9
Q ss_pred CeeEEEcCCcccc-----ccCcccCCCCCCCEEeCcCcccccccchhh-----ccCCcCcEEecCCCcCccc----Cchh
Q 017559 41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSLKRLSTSI-----CKLKSLRSLDLSYCINLES----FPEI 106 (369)
Q Consensus 41 ~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~ 106 (369)
+|++|+++++.++ .++..+..+++|++|++++|......+..+ ...++|++|++++|..... ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 3556666555554 234445555566666665554332222111 1134566666655543332 2344
Q ss_pred hhccCccceecccccccccccchhhh-----cccCCCeEeecCCCCCCC----CCcccCCCcchhhhccCcccCCCC---
Q 017559 107 LEKMELLEEINLEEASNIKELPSSIE-----NLEGLKQLKLTGCTKLGS----LPESLGNLKSLERLHAGLLAIPQA--- 174 (369)
Q Consensus 107 ~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~--- 174 (369)
+..+++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 45556666666665543222111111 134566666666543221 233344556666666666654421
Q ss_pred --Cc-cccCCCCCcEEEeccCCCcC-----CCcccCCCCCCcEEeccCCCCcc-----CCCC-CCCCCCCCEEEcCCCCC
Q 017559 175 --PS-SIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPD-IGCLSSLESLNLSGNNI 240 (369)
Q Consensus 175 --~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~~L~~L~l~~~~l 240 (369)
.. .+..+++|++|++++|.... ++..+..+++|++|++++|.+.+ +... ....++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 01 11235566666666665433 34444455666666666666543 1111 11234666666666665
Q ss_pred Cc-----cchhhccCCCCCEeccccc
Q 017559 241 ES-----LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 241 ~~-----~~~~~~~~~~L~~L~l~~~ 261 (369)
+. ++..+..+++|++|++++|
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred chHHHHHHHHHHhhCCCccEEEccCC
Confidence 52 3444555666666666666
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=168.60 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=152.1
Q ss_pred CeeEEEcCCccccc--cCc--ccCCCCCCCEEeCcCcccccccchhh--ccCCcCcEEecCCCcCcccCc----hhhhcc
Q 017559 41 NVVELNLMCTPIEE--VPL--SIECLPNLETLEMSFCNSLKRLSTSI--CKLKSLRSLDLSYCINLESFP----EILEKM 110 (369)
Q Consensus 41 ~L~~L~l~~~~~~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l 110 (369)
.++.+.+....+.. +.. .+..+++|++|++++|......|..+ ..+++|++|++++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 56677776655541 111 12234568888888887766666665 778888888888876654433 334568
Q ss_pred CccceecccccccccccchhhhcccCCCeEeecCCCCCCC--C--CcccCCCcchhhhccCcccCCCCCcc----ccCCC
Q 017559 111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--L--PESLGNLKSLERLHAGLLAIPQAPSS----IVDLN 182 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~ 182 (369)
++|++|++++|......+..+..+++|++|++++|...+. + +..+..+++|++|++++|.++.++.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8888888887766555556777888888888888764431 1 12236778888888888888755442 45678
Q ss_pred CCcEEEeccCCCcCC-CcccCCC---CCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEecc
Q 017559 183 KLETLSLFECRGLVL-PPLLSGL---SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258 (369)
Q Consensus 183 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 258 (369)
+|++|++++|..... |..+..+ ++|++|++++|.+..+|..+. ++|++|++++|.++.+|. +..+++|++|++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence 888888888886555 5545554 688888888888887776553 688888888888887764 567788888888
Q ss_pred cccc
Q 017559 259 VNCV 262 (369)
Q Consensus 259 ~~~~ 262 (369)
++|+
T Consensus 302 ~~N~ 305 (310)
T 4glp_A 302 DGNP 305 (310)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 8873
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.1e-20 Score=160.93 Aligned_cols=206 Identities=18% Similarity=0.242 Sum_probs=107.9
Q ss_pred ccccCCccCCeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccc-hhhccCCcCcEEecCC-CcCcccCchhhh
Q 017559 32 LREFPRISGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSY-CINLESFPEILE 108 (369)
Q Consensus 32 ~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-~~~~~~~~~~~~ 108 (369)
++.+|....++++|+++++.++.++. .+..+++|++|++++|...+.++ ..+.++++|++|++++ |......+..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 55566622266666666666665554 45566666666666654233333 3455566666666665 333222234445
Q ss_pred ccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-cccCCCCCc-
Q 017559 109 KMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLE- 185 (369)
Q Consensus 109 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~- 185 (369)
.+++|++|++++|.. +.+|. +..+++|+ .|+.|++++| .+..++. .+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGL-KMFPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp CCTTCCEEEEEEECC-CSCCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CCCCCCEEeCCCCCC-ccccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhccee
Confidence 555555555554432 22332 33333333 0114444444 3333332 244555666
Q ss_pred EEEeccCCCcCCCcccCCCCCCcEEeccCCC-CccCC-CCCCCC-CCCCEEEcCCCCCCccchhhccCCCCCEecccccc
Q 017559 186 TLSLFECRGLVLPPLLSGLSSLKKLELGDCE-IMEIP-PDIGCL-SSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 186 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
+|++++|....+|......++|++|++++|+ +..++ ..+..+ ++|++|++++|.++.+|.. .+++|+.|+++++.
T Consensus 160 ~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 6666666554554422222566666666664 65543 335556 6777777777777666643 56666777666553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=8.7e-20 Score=159.75 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=105.8
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++++++++++++.+|..+. ++++.|++++|......+..+..+++|++|++++|... .++..
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-------------- 73 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-------------- 73 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--------------
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--------------
Confidence 44555555555555543322 44555555554443333344455555555555554322 12211
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-ccccCCCCCcEEEeccCCCcCCCc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP 199 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 199 (369)
..+++|+.|++++|. +..+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|....++.
T Consensus 74 -----------~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 -----------GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp -----------SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred -----------CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 344455555555532 3344444555555666666666655554 345556666666666666555543
Q ss_pred -ccCCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEcCCCCCCccchhhccCCCCCEecccccc
Q 017559 200 -LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 200 -~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
.+..+++|+.|++++|++..++.. +..+++|++|++++|.++.+|..+...++|+.+++++|+
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 345566666777776666665543 355667777777777776666666666667777776664
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.4e-20 Score=158.76 Aligned_cols=202 Identities=18% Similarity=0.232 Sum_probs=134.1
Q ss_pred CCCCccCCCCcCCCCccEEecCCCCCccccCC-ccC---CeeEEEcCCcc-ccccCc-ccCCCCCCCEEeCcC-cccccc
Q 017559 6 CESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTP-IEEVPL-SIECLPNLETLEMSF-CNSLKR 78 (369)
Q Consensus 6 c~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~-~~~---~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~ 78 (369)
|.+++++|. + .+++++|++++|. ++.++. .+. +|++|+++++. ++.++. .+..+++|++|++++ |.....
T Consensus 20 c~~l~~ip~-~-~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-L-PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-C-CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-C-CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 777889998 3 5589999999998 777765 333 99999999997 888875 688999999999998 544433
Q ss_pred cchhhccCCcCcEEecCCCcCcccCchhhhccCccc---eecccccccccccc-hhhhcccCCC-eEeecCCCCCCCCCc
Q 017559 79 LSTSICKLKSLRSLDLSYCINLESFPEILEKMELLE---EINLEEASNIKELP-SSIENLEGLK-QLKLTGCTKLGSLPE 153 (369)
Q Consensus 79 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~ 153 (369)
.+..+.++++|++|++++|... .+|. +..+++|+ +|++++|..++.++ ..+.++++|+ .|++++|.. +.++.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~ 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECT
T ss_pred CHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCH
Confidence 3457888999999999997644 4665 77788887 88888773444443 3466667777 777766432 23332
Q ss_pred ccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCC-CcCCC-cccCCC-CCCcEEeccCCCCccCCCCCCCCCCC
Q 017559 154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR-GLVLP-PLLSGL-SSLKKLELGDCEIMEIPPDIGCLSSL 230 (369)
Q Consensus 154 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L 230 (369)
.... .++|++|++++|. ...++ ..+..+ ++|+.|++++|.+..++.. .+++|
T Consensus 174 ~~~~-----------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L 228 (239)
T 2xwt_C 174 YAFN-----------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHL 228 (239)
T ss_dssp TTTT-----------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTC
T ss_pred hhcC-----------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccC
Confidence 2212 2345555555552 33333 234444 5555566655555555443 45556
Q ss_pred CEEEcCCC
Q 017559 231 ESLNLSGN 238 (369)
Q Consensus 231 ~~L~l~~~ 238 (369)
+.|+++++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 66665554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.8e-19 Score=157.72 Aligned_cols=197 Identities=23% Similarity=0.245 Sum_probs=138.4
Q ss_pred CCCCccEEecCCCCCccccCCccC-CeeEEEcCCccccccC-cccCCCCCCCEEeCcCcccccccchhhccCCcCcEEec
Q 017559 17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (369)
.+++++.++++++. ++.+|..+. +++.|+++++.++.++ ..+..+++|++|++++|... .++. ...+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEEC
T ss_pred ccCCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEEC
Confidence 67889999999988 889987655 9999999999998664 57899999999999997654 4444 367999999999
Q ss_pred CCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017559 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|.. ..+|..+..+++|++|++++|......+..+..+++|+.|++++ |.+..+
T Consensus 85 s~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~------------------------N~l~~~ 139 (290)
T 1p9a_G 85 SHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG------------------------NELKTL 139 (290)
T ss_dssp CSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT------------------------SCCCCC
T ss_pred CCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC------------------------CCCCcc
Confidence 99654 46666667777777777776543333334455555555555555 444433
Q ss_pred Cc-cccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC
Q 017559 175 PS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 175 ~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
+. .+..+++|+.|++++|....+|. .+..+++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 32 23455666666666666555554 345567777777777777777766666677777777777654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.1e-20 Score=164.15 Aligned_cols=200 Identities=19% Similarity=0.167 Sum_probs=117.5
Q ss_pred CCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeE
Q 017559 61 CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140 (369)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 140 (369)
.+++|+.|++++|... .++ .+..+++|++|++++|.... + ..+..+++|++|++++|......+..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3455555555554322 222 24445555555555543322 2 244555555666655544333333344556666666
Q ss_pred eecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-ccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCc
Q 017559 141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 218 (369)
++++|......+..+..+++|++|++++|.++.++.. +..+++|++|++++|....++. .+..+++|+.|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 6666544333333456666666677766666655543 4567777777777777655554 4567778888888888887
Q ss_pred cCCC-CCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCCc
Q 017559 219 EIPP-DIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL 270 (369)
Q Consensus 219 ~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 270 (369)
+++. .+..+++|++|++++|.+. +.+++|+.++++.|..-..+|..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence 7544 3577788888888888653 34667777877776444445443
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=6.3e-22 Score=185.14 Aligned_cols=322 Identities=20% Similarity=0.197 Sum_probs=167.8
Q ss_pred CCCCccEEecCCCCCcc-----ccCCcc---CCeeEEEcCCccccc--cCcccCCCC----CCCEEeCcCccccc----c
Q 017559 17 HFISSIKIDCYKCVNLR-----EFPRIS---GNVVELNLMCTPIEE--VPLSIECLP----NLETLEMSFCNSLK----R 78 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~-----~~~~~~---~~L~~L~l~~~~~~~--l~~~~~~l~----~L~~L~l~~~~~~~----~ 78 (369)
.+++|++|++++|. +. .++..+ .+|++|+++++.++. +......++ +|++|++++|.... .
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 56667777777766 33 223222 367777776666652 111122233 57777777765442 3
Q ss_pred cchhhccCCcCcEEecCCCcCcccCchhhh-----ccCccceecccccccccc----cchhhhcccCCCeEeecCCCCCC
Q 017559 79 LSTSICKLKSLRSLDLSYCINLESFPEILE-----KMELLEEINLEEASNIKE----LPSSIENLEGLKQLKLTGCTKLG 149 (369)
Q Consensus 79 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 149 (369)
++..+..+++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|....
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 455566677777777777654332222221 244577777776644332 24445556777777777655322
Q ss_pred CCCcccC-----CCcchhhhccCcccCCC-----CCccccCCCCCcEEEeccCCCcCC------CcccCCCCCCcEEecc
Q 017559 150 SLPESLG-----NLKSLERLHAGLLAIPQ-----APSSIVDLNKLETLSLFECRGLVL------PPLLSGLSSLKKLELG 213 (369)
Q Consensus 150 ~~~~~~~-----~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~ 213 (369)
.....+. ..++|++|++++|.++. ++..+..+++|++|++++|..... +.....+++|++|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 1111111 24467777777776664 244455667777777777763321 1122346677777777
Q ss_pred CCCCcc-----CCCCCCCCCCCCEEEcCCCCCCcc-----chhhc-cCCCCCEeccccccccccC-----CC---cCccc
Q 017559 214 DCEIME-----IPPDIGCLSSLESLNLSGNNIESL-----PTSIS-QLSRLRWLYLVNCVKLQSL-----PE---LPLLL 274 (369)
Q Consensus 214 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~-~~~~L~~L~l~~~~~l~~~-----~~---~~~~L 274 (369)
+|.+.. ++..+..+++|++|++++|.++.. ...+. ..++|++|++++|. ++.. +. ..++|
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSC
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCc
Confidence 776665 344445567777777777766521 11111 22577777777773 3322 11 12567
Q ss_pred ceecccCCcccccCC---------CchhhhHHhhHHHHHhhhccc----cccccCCCCCcEEEecCccCcChhhHHHHHH
Q 017559 275 VMLGASDCKRLQFLP---------ELTSCLEELDASILQALSNRT----GERLSKHMSPVQLIFANCLKLNESIWADLQK 341 (369)
Q Consensus 275 ~~L~l~~c~~L~~l~---------~~~~~l~~l~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~c~~l~~~~~~~~~~ 341 (369)
++|+++++. +.... ...+++++|++..|. +++.+ ...+.....+..+.+++| .+++..+..+..
T Consensus 344 ~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~ 420 (461)
T 1z7x_W 344 LELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVE 420 (461)
T ss_dssp CEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHH
T ss_pred cEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHH
Confidence 777776662 22110 002244555544442 22111 112223344556777766 566665555544
Q ss_pred HH
Q 017559 342 RI 343 (369)
Q Consensus 342 ~~ 343 (369)
.+
T Consensus 421 ~l 422 (461)
T 1z7x_W 421 SV 422 (461)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=4.1e-20 Score=160.51 Aligned_cols=225 Identities=19% Similarity=0.167 Sum_probs=168.9
Q ss_pred CCCccEEecCCCCCccccCC--ccCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecC
Q 017559 18 FISSIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS 95 (369)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 95 (369)
+..+..+++.++. +..+.. .+.+|+.|+++++.+..++. +..+++|++|++++|.... ++ .+..+++|++|+++
T Consensus 18 ~~~l~~l~l~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSC-TTSEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcc-cccccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECC
Confidence 4445555666554 333322 22388888888888877654 6778899999999876543 33 57788999999999
Q ss_pred CCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017559 96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (369)
+|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 88666555666788999999999977655555556788899999999987655444455688999999999999988776
Q ss_pred cc-ccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCC
Q 017559 176 SS-IVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSR 252 (369)
Q Consensus 176 ~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~ 252 (369)
.. +..+++|++|++++|....++. .+..+++|+.|++++|.+. +.+++|+.++++.|.++ .+|..++.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 54 5778999999999999766664 5688999999999999754 44678999999988887 77776665544
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.6e-19 Score=159.54 Aligned_cols=193 Identities=24% Similarity=0.347 Sum_probs=108.0
Q ss_pred CCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEe
Q 017559 62 LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLK 141 (369)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 141 (369)
+++|++|++++|... .++ .+..+++|++|++++|... .++. +..+++|++|++++|. ++.++ .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 344444444443222 222 2444455555555444322 2222 4445555555555433 22222 344555555555
Q ss_pred ecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCC
Q 017559 142 LTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP 221 (369)
Q Consensus 142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 221 (369)
+++|. +..++. +..+++|++|++++|.+..++. +..+++|+.|++++|....++. +..+++|+.|++++|.+.+++
T Consensus 114 l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 114 LTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 55543 222332 5556666666666666665543 5566777777777776655555 666777777777777776654
Q ss_pred CCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccC
Q 017559 222 PDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~ 267 (369)
. +..+++|++|++++|.++.++. +..+++|+.|++++|+ ++..
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE-EECC
T ss_pred h-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe-eecC
Confidence 4 5667777777777777776663 6677777777777773 4443
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.1e-21 Score=179.20 Aligned_cols=222 Identities=21% Similarity=0.195 Sum_probs=144.0
Q ss_pred CeeEEEcCCccccc-----cCcccCCCCCCCEEeCcCccc---ccccchh-------hccCCcCcEEecCCCcCcc----
Q 017559 41 NVVELNLMCTPIEE-----VPLSIECLPNLETLEMSFCNS---LKRLSTS-------ICKLKSLRSLDLSYCINLE---- 101 (369)
Q Consensus 41 ~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~---~~~~~~~-------~~~l~~L~~L~l~~~~~~~---- 101 (369)
+|++|+++++.++. +...+..+++|++|++++|.. ...+|.. +..+++|++|++++|....
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 67777777776652 334466777788888877532 1223332 3567788888888766554
Q ss_pred cCchhhhccCccceecccccccccc----cchhhhcc---------cCCCeEeecCCCCC-CCCC---cccCCCcchhhh
Q 017559 102 SFPEILEKMELLEEINLEEASNIKE----LPSSIENL---------EGLKQLKLTGCTKL-GSLP---ESLGNLKSLERL 164 (369)
Q Consensus 102 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L 164 (369)
.++..+..+++|++|++++|..... ++..+..+ ++|++|++++|... ..++ ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 3556677778888888876654322 22233333 77888888776543 2222 234566677777
Q ss_pred ccCcccCC--C----CCccccCCCCCcEEEeccCCC-----cCCCcccCCCCCCcEEeccCCCCccC-----CCCC--CC
Q 017559 165 HAGLLAIP--Q----APSSIVDLNKLETLSLFECRG-----LVLPPLLSGLSSLKKLELGDCEIMEI-----PPDI--GC 226 (369)
Q Consensus 165 ~l~~~~~~--~----~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~--~~ 226 (369)
++++|.+. + .+..+..+++|+.|++++|.. ..++..+..+++|++|++++|.+... +..+ ..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 77777766 1 222566777888888888875 44566667778888888888877652 3333 33
Q ss_pred CCCCCEEEcCCCCCCc-----cchhh-ccCCCCCEecccccc
Q 017559 227 LSSLESLNLSGNNIES-----LPTSI-SQLSRLRWLYLVNCV 262 (369)
Q Consensus 227 ~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~ 262 (369)
+++|++|++++|.++. ++..+ ..+++|++|++++|.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7788888888888775 66666 557888888888773
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=3.6e-21 Score=172.43 Aligned_cols=219 Identities=15% Similarity=0.132 Sum_probs=133.5
Q ss_pred CccEEecCCCCCccccCCcc--CCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccc-cchhhccCCcCcEEecCC
Q 017559 20 SSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR-LSTSICKLKSLRSLDLSY 96 (369)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 96 (369)
.++.++++++.......... .+++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|++|++++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 36677777765221111112 377778887777775555566677888888887765443 566677778888888887
Q ss_pred CcCcccCchhhhccCccceeccccccccc--ccchhhhcccCCCeEeecCCCCCCC--CCcccCCCc-chhhhccCccc-
Q 017559 97 CINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLK-SLERLHAGLLA- 170 (369)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~~~- 170 (369)
|......+..+..+++|++|++++|..++ .++..+..+++|++|++++|..++. ++..+..++ +|++|++++|.
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 76555566677778888888888774444 3555567777888888877633332 334455566 66677766663
Q ss_pred -CC--CCCccccCCCCCcEEEeccCC-C-cCCCcccCCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEcCCC
Q 017559 171 -IP--QAPSSIVDLNKLETLSLFECR-G-LVLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 171 -~~--~~~~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~ 238 (369)
++ .++..+..+++|++|++++|. . ...+..+..+++|++|++++|. +.. ....+..+++|++|++++|
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 22 334444556666666666665 2 2333445556666666666663 211 1112445666666666666
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.8e-19 Score=159.20 Aligned_cols=193 Identities=20% Similarity=0.306 Sum_probs=134.2
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|++|+++++.+..++ .+..+++|++|++++|... .++. +..+++|++|++++|... .++ .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCC
Confidence 7777777777776665 3666777777777776443 3344 667777777777776533 333 466777777777776
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.. +.++. +..+++|+.|++++|.. ..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|....++.
T Consensus 117 n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 117 TQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp SCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCC-CCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 553 33333 66777777777777543 33333 6677778888888887777655 6777888888888888666665
Q ss_pred cCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccch
Q 017559 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT 245 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 245 (369)
+..+++|+.|++++|.+.+++. +..+++|++|++++|.++..|.
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 6677888888888888887653 6778888888888887776553
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.2e-19 Score=161.61 Aligned_cols=236 Identities=18% Similarity=0.197 Sum_probs=174.8
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccc-hhhccCCcCcEEecC-CC
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLS-YC 97 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~-~~ 97 (369)
++++.+++. ++++|..+. ++++|++++|.++.+|. .|..+++|++|++++|...+.++ ..|.++++++++... .+
T Consensus 12 ~~v~C~~~~-Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTT-CCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCC-CCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 567888777 889997665 99999999999999986 58999999999999988777665 457788888875554 44
Q ss_pred cCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCc-ccCCC-cchhhhccCcccCCCCC
Q 017559 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNL-KSLERLHAGLLAIPQAP 175 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~ 175 (369)
......+..+..+++|++|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++|.++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 44444567889999999999997765444444555666788888887666666553 34444 35778888888888877
Q ss_pred ccccCCCCCcEEEecc-CCCcCCCc-ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCC-CCCccchhhccCCC
Q 017559 176 SSIVDLNKLETLSLFE-CRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN-NIESLPTSISQLSR 252 (369)
Q Consensus 176 ~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~ 252 (369)
.......+|+++.+.+ +....+|. .+..+++|++|++++|+++.+|.. .+.+|+.|.+.++ .++.+| .+..+++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~ 247 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVA 247 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCS
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcC
Confidence 7666677888888875 44667764 567788888888888888887653 3566777776664 566777 3677788
Q ss_pred CCEeccccc
Q 017559 253 LRWLYLVNC 261 (369)
Q Consensus 253 L~~L~l~~~ 261 (369)
|+.+++.++
T Consensus 248 L~~l~l~~~ 256 (350)
T 4ay9_X 248 LMEASLTYP 256 (350)
T ss_dssp CCEEECSCH
T ss_pred hhhCcCCCC
Confidence 888877543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=161.64 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=171.9
Q ss_pred CCCccEEecCCCCCccc-----cCCcc--CCeeEEEcCCcccc-ccCccc--CCCCCCCEEeCcCcccccccc----hhh
Q 017559 18 FISSIKIDCYKCVNLRE-----FPRIS--GNVVELNLMCTPIE-EVPLSI--ECLPNLETLEMSFCNSLKRLS----TSI 83 (369)
Q Consensus 18 ~~~L~~L~l~~~~~~~~-----~~~~~--~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~ 83 (369)
...++.+.+.++. +.. +.... .+|++|+++++.+. ..|..+ ..+++|++|++++|......+ ..+
T Consensus 63 ~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3346778887765 321 11111 27999999999887 455555 889999999999988765433 334
Q ss_pred ccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccc--cc--hhhhcccCCCeEeecCCCCCCCCCc----cc
Q 017559 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKE--LP--SSIENLEGLKQLKLTGCTKLGSLPE----SL 155 (369)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~ 155 (369)
..+++|++|++++|......+..++.+++|++|++++|...+. ++ ..+..+++|++|++++|.. +.++. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHH
Confidence 5799999999999887776778899999999999998875442 22 2346789999999999754 44333 24
Q ss_pred CCCcchhhhccCcccCCCC-CccccCC---CCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCC
Q 017559 156 GNLKSLERLHAGLLAIPQA-PSSIVDL---NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLE 231 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 231 (369)
..+++|++|++++|.+... |..+..+ ++|++|++++|....+|..+. ++|+.|++++|.+.+++. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 6789999999999999976 6666665 699999999999888887664 799999999999998765 67889999
Q ss_pred EEEcCCCCCCc
Q 017559 232 SLNLSGNNIES 242 (369)
Q Consensus 232 ~L~l~~~~l~~ 242 (369)
+|++++|.+++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998763
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.3e-21 Score=175.38 Aligned_cols=235 Identities=19% Similarity=0.209 Sum_probs=170.6
Q ss_pred CeeEEEcCCccccccCcccCCC--CCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCccc-CchhhhccCccceec
Q 017559 41 NVVELNLMCTPIEEVPLSIECL--PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLES-FPEILEKMELLEEIN 117 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 117 (369)
.++.++++++.+. +..+..+ ++++.|+++++......+. +..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5788899887765 2334445 7899999998766555444 55689999999999875544 777888999999999
Q ss_pred ccccccccccchhhhcccCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcc-cCCC--CCccccCCC-CCcEEEecc
Q 017559 118 LEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLL-AIPQ--APSSIVDLN-KLETLSLFE 191 (369)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~~~-~L~~L~l~~ 191 (369)
+++|......+..+..+++|++|++++|..++. ++..+..+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 998875556677788899999999999855542 4555677888999999988 7763 455677788 899999988
Q ss_pred CCC----cCCCcccCCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEcCCCC-CC-ccchhhccCCCCCEeccccccc
Q 017559 192 CRG----LVLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGNN-IE-SLPTSISQLSRLRWLYLVNCVK 263 (369)
Q Consensus 192 ~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~~ 263 (369)
|.. ..++..+..+++|+.|++++|. +.+ .+..+..+++|++|++++|. +. .....+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--
Confidence 842 3455566678889999999988 443 45567778899999999884 33 22234677888999999888
Q ss_pred ccc--CCCcCcccceeccc
Q 017559 264 LQS--LPELPLLLVMLGAS 280 (369)
Q Consensus 264 l~~--~~~~~~~L~~L~l~ 280 (369)
+++ +.....+++.|++.
T Consensus 283 i~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 283 VPDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp SCTTCHHHHHHHSTTSEES
T ss_pred cCHHHHHHHHhhCcceEEe
Confidence 222 11122345666664
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.7e-21 Score=175.72 Aligned_cols=242 Identities=17% Similarity=0.123 Sum_probs=182.7
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccc----cchhhccCCcCcEEecCCCcCc---ccCchh-------
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINL---ESFPEI------- 106 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~~~------- 106 (369)
.|+...++...+..+...+..+++|++|++++|..... ++..+..+++|++|++++|... ..+|..
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 34444455555667777788889999999999876654 3344678999999999997332 234443
Q ss_pred hhccCccceeccccccccc----ccchhhhcccCCCeEeecCCCCCCC----CCcccCCC---------cchhhhccCcc
Q 017559 107 LEKMELLEEINLEEASNIK----ELPSSIENLEGLKQLKLTGCTKLGS----LPESLGNL---------KSLERLHAGLL 169 (369)
Q Consensus 107 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~ 169 (369)
+..+++|++|++++|.... .++..+..+++|++|++++|..... ++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3789999999999887655 3677888999999999999765322 22223334 89999999999
Q ss_pred cCC--CCC---ccccCCCCCcEEEeccCCCc------CCCcccCCCCCCcEEeccCCCCc-----cCCCCCCCCCCCCEE
Q 017559 170 AIP--QAP---SSIVDLNKLETLSLFECRGL------VLPPLLSGLSSLKKLELGDCEIM-----EIPPDIGCLSSLESL 233 (369)
Q Consensus 170 ~~~--~~~---~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L 233 (369)
.+. .++ ..+..+++|++|++++|... ..+..+..+++|+.|++++|.+. .++..+..+++|++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 986 333 35667899999999999865 23336788999999999999994 366667889999999
Q ss_pred EcCCCCCCc-----cchhhc--cCCCCCEecccccccccc-----CCCc----CcccceecccCCc
Q 017559 234 NLSGNNIES-----LPTSIS--QLSRLRWLYLVNCVKLQS-----LPEL----PLLLVMLGASDCK 283 (369)
Q Consensus 234 ~l~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~~l~~-----~~~~----~~~L~~L~l~~c~ 283 (369)
++++|.++. ++..+. .+++|++|++++| .++. ++.. .++|++|++++|+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 999999984 355563 4899999999999 4554 5542 4789999998875
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.2e-20 Score=170.68 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=115.6
Q ss_pred EecCCCCCccccCCccC---CeeEEEcCCccccccC-----cccCCCC-CCCEEeCcCcccccccchhhccC-----CcC
Q 017559 24 IDCYKCVNLREFPRISG---NVVELNLMCTPIEEVP-----LSIECLP-NLETLEMSFCNSLKRLSTSICKL-----KSL 89 (369)
Q Consensus 24 L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 89 (369)
++++.+.....+|.+.. +|++|+++++.++..+ ..+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44555553333443333 4666666666666443 3455566 67777777665544444444433 667
Q ss_pred cEEecCCCcCcccCchh----hhcc-Cccceecccccccccccchhh----hc-ccCCCeEeecCCCCCCCC----Cccc
Q 017559 90 RSLDLSYCINLESFPEI----LEKM-ELLEEINLEEASNIKELPSSI----EN-LEGLKQLKLTGCTKLGSL----PESL 155 (369)
Q Consensus 90 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~----~~~~ 155 (369)
++|++++|......+.. +..+ ++|++|++++|......+..+ .. .++|++|++++|...... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777766544443332 2333 666777776655433322222 22 246666666665433211 1222
Q ss_pred CCCc-chhhhccCcccCCCCCc-----cccCC-CCCcEEEeccCCCcC-----CCcccCC-CCCCcEEeccCCCCccCC-
Q 017559 156 GNLK-SLERLHAGLLAIPQAPS-----SIVDL-NKLETLSLFECRGLV-----LPPLLSG-LSSLKKLELGDCEIMEIP- 221 (369)
Q Consensus 156 ~~l~-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~- 221 (369)
...+ +|++|++++|.++.... .+..+ ++|++|++++|.... ++..+.. .++|++|++++|.+.+.+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 55566666655543321 22233 356666666655333 2222222 235556666655554421
Q ss_pred ----CCCCCCCCCCEEEcCCCCCCc--------cchhhccCCCCCEeccccc
Q 017559 222 ----PDIGCLSSLESLNLSGNNIES--------LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 222 ----~~~~~~~~L~~L~l~~~~l~~--------~~~~~~~~~~L~~L~l~~~ 261 (369)
..+..+++|++|++++|.+.. ++..+..+++|+.|++++|
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 123445555666655554221 1222334445555555555
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=6.9e-22 Score=190.70 Aligned_cols=176 Identities=12% Similarity=0.032 Sum_probs=103.9
Q ss_pred CCCCccEEecCCCCCccccC----CccC-CeeEEEcCCcc-cc--ccCcccCCCCCCCEEeCcCcccccc----cchhhc
Q 017559 17 HFISSIKIDCYKCVNLREFP----RISG-NVVELNLMCTP-IE--EVPLSIECLPNLETLEMSFCNSLKR----LSTSIC 84 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~----~~~~-~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~ 84 (369)
.+++|++|++++|......+ ..++ +|++|+++++. +. .++.....+++|++|++++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 46778888888875222211 1122 48888885543 32 3333345678888888888765433 334456
Q ss_pred cCCcCcEEecCCCcCc----ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCC---CCCCcccCC
Q 017559 85 KLKSLRSLDLSYCINL----ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL---GSLPESLGN 157 (369)
Q Consensus 85 ~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~ 157 (369)
.+++|++|+++++... ..++..+.++++|++|++++|.. ..++..+..+++|+.|+++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6888888888876554 23455667888888888887543 346666777788888887643221 112223344
Q ss_pred CcchhhhccCcccCCCCCccccCCCCCcEEEeccCC
Q 017559 158 LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR 193 (369)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 193 (369)
+++|+.+++.++....++..+..+++|++|++++|.
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 445555555444333444444445555555555544
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=4.5e-18 Score=145.79 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=45.8
Q ss_pred cchhhhccCcccCCCCCcc-ccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEc
Q 017559 159 KSLERLHAGLLAIPQAPSS-IVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNL 235 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 235 (369)
++|++|++++|.++.++.. +..+++|++|++++|....++. .+..+++|+.|++++|.+..++. .+..+++|++|++
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 3333333333333333322 3445556666666665554443 45566666666666666666443 4566677777777
Q ss_pred CCCCCC
Q 017559 236 SGNNIE 241 (369)
Q Consensus 236 ~~~~l~ 241 (369)
++|.+.
T Consensus 187 ~~N~~~ 192 (251)
T 3m19_A 187 FGNQFD 192 (251)
T ss_dssp CSCCBC
T ss_pred eCCcee
Confidence 777665
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=8.8e-18 Score=143.97 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=98.0
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
..++++++++. +..+|..++ +++.|+++++.+..++. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45566666665 566665444 66666666666654433 4556666666666665544444444555666666666665
Q ss_pred cCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-
Q 017559 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 176 (369)
......+..+..+++|++|++++|.. ....+..+..+++|++|++++|.+..++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQL------------------------KSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcC------------------------CCcChhHhccCCcccEEECcCCcCCccCHH
Confidence 44433334444555555555554332 22222223455555555555555555544
Q ss_pred cccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCc
Q 017559 177 SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 177 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 218 (369)
.+..+++|++|++++|....++. .+..+++|+.|++++|.+.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 45566677777777776555553 5666777777777777654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=6.4e-18 Score=152.09 Aligned_cols=233 Identities=20% Similarity=0.189 Sum_probs=164.3
Q ss_pred eEEEcCCccccccCcccCCCCCCCEEeCcCcccccccc-hhhccCCcCcEEecCCCcCcccCc-hhhhccCccceecccc
Q 017559 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEE 120 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 120 (369)
++++.++++++.+|..+ .+++++|++++|... .++ ..|.++++|++|++++|...+.++ ..|.++++++++...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35666778888888755 368999999997654 555 468889999999999987766555 4677888888765554
Q ss_pred ccccccc-chhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCc-ccCCCCCc-cccCC-CCCcEEEeccCCCcC
Q 017559 121 ASNIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL-LAIPQAPS-SIVDL-NKLETLSLFECRGLV 196 (369)
Q Consensus 121 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~ 196 (369)
++.+..+ +..+..+++|+.|++++|......+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|....
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4445544 56788899999999998654433333344555666777654 45555543 33333 468888999888877
Q ss_pred CCcccCCCCCCcEEeccC-CCCccCCC-CCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCCc--Cc
Q 017559 197 LPPLLSGLSSLKKLELGD-CEIMEIPP-DIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL--PL 272 (369)
Q Consensus 197 ~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~ 272 (369)
++..+....+|+++.+.+ |.+..++. .+..+++|++|++++|+++.+|.. .+.+|++|.+.++..++.+|.. ++
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCc
Confidence 776655667888888874 56666765 367888999999999988888753 4677888888777777777752 34
Q ss_pred ccceeccc
Q 017559 273 LLVMLGAS 280 (369)
Q Consensus 273 ~L~~L~l~ 280 (369)
+|+.+++.
T Consensus 247 ~L~~l~l~ 254 (350)
T 4ay9_X 247 ALMEASLT 254 (350)
T ss_dssp SCCEEECS
T ss_pred ChhhCcCC
Confidence 55555543
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=9.5e-22 Score=189.71 Aligned_cols=148 Identities=16% Similarity=0.073 Sum_probs=77.3
Q ss_pred ccEEecCCCCCccc--cC---CccCCeeEEEcCCccccc-----cCcccCCCCCCCEEeCcCcccc----cccchhhccC
Q 017559 21 SIKIDCYKCVNLRE--FP---RISGNVVELNLMCTPIEE-----VPLSIECLPNLETLEMSFCNSL----KRLSTSICKL 86 (369)
Q Consensus 21 L~~L~l~~~~~~~~--~~---~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l 86 (369)
|++|++++|..+.. ++ ...++|++|+++++.++. ++.....+++|++|++++|... ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 77777777653221 11 123477777776666542 2223345677777777766543 2344445567
Q ss_pred CcCcEEecCCCcCcccCchhhhccCccceecccccccc---cccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017559 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI---KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (369)
++|+.|++++|... .++..+..+++|++|+++.+... ......+..+++|+.+.++++ ....++..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 77777777775433 35566666777777776532211 111223334445555544442 22333333444445555
Q ss_pred hccCccc
Q 017559 164 LHAGLLA 170 (369)
Q Consensus 164 L~l~~~~ 170 (369)
|++++|.
T Consensus 298 L~Ls~~~ 304 (592)
T 3ogk_B 298 LDLLYAL 304 (592)
T ss_dssp EEETTCC
T ss_pred EecCCCc
Confidence 5555444
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=2e-19 Score=162.70 Aligned_cols=240 Identities=15% Similarity=0.079 Sum_probs=172.7
Q ss_pred EEEcCCcccc-ccCcccCCCCCCCEEeCcCcccccccc----hhhccCC-cCcEEecCCCcCcccCchhhhcc-----Cc
Q 017559 44 ELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLS----TSICKLK-SLRSLDLSYCINLESFPEILEKM-----EL 112 (369)
Q Consensus 44 ~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 112 (369)
.+.++.+.++ .+|..+...++|++|++++|......+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3567778887 445555556679999999988665444 6677888 99999999987766666666664 99
Q ss_pred cceecccccccccccchh----hhcc-cCCCeEeecCCCCCCCCCcc----cCC-CcchhhhccCcccCCCC-----Ccc
Q 017559 113 LEEINLEEASNIKELPSS----IENL-EGLKQLKLTGCTKLGSLPES----LGN-LKSLERLHAGLLAIPQA-----PSS 177 (369)
Q Consensus 113 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~-----~~~ 177 (369)
|++|++++|......+.. +..+ ++|+.|++++|......+.. +.. .++|++|++++|.+... +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999988755544443 4444 89999999997754333322 344 46999999999998832 333
Q ss_pred ccCCC-CCcEEEeccCCCcCCCc-----ccCCC-CCCcEEeccCCCCcc-----CCCCCCC-CCCCCEEEcCCCCCCccc
Q 017559 178 IVDLN-KLETLSLFECRGLVLPP-----LLSGL-SSLKKLELGDCEIME-----IPPDIGC-LSSLESLNLSGNNIESLP 244 (369)
Q Consensus 178 ~~~~~-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~l~~~~ 244 (369)
+...+ +|++|++++|....... .+..+ ++|++|++++|.+.+ ++..+.. .++|++|++++|.++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44554 99999999998654442 34455 599999999999887 3434444 469999999999988543
Q ss_pred -----hhhccCCCCCEecccccc--c-----cccCCC---cCcccceecccCCc
Q 017559 245 -----TSISQLSRLRWLYLVNCV--K-----LQSLPE---LPLLLVMLGASDCK 283 (369)
Q Consensus 245 -----~~~~~~~~L~~L~l~~~~--~-----l~~~~~---~~~~L~~L~l~~c~ 283 (369)
..+..+++|++|++++|. . +..++. ..++|+.|++++++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 334778999999999995 1 222222 33568888888775
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=2.5e-20 Score=179.86 Aligned_cols=218 Identities=20% Similarity=0.212 Sum_probs=115.3
Q ss_pred CCCCccEEecCCCCCccccC------------------CccCCeeEEEcCCccccc-cCcccC-CCCCCCEEeCcCcccc
Q 017559 17 HFISSIKIDCYKCVNLREFP------------------RISGNVVELNLMCTPIEE-VPLSIE-CLPNLETLEMSFCNSL 76 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~------------------~~~~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L~l~~~~~~ 76 (369)
.+++|+.|+++++....++. ....+|++|+++++.++. .+..+. .+++|++|++++|...
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 46677777777765443321 112267777776665542 112222 4667777777776443
Q ss_pred cc--cchhhccCCcCcEEecCCCcCccc----CchhhhccCccceecccccc-ccc--ccchhhhcccCCCeEeecCCCC
Q 017559 77 KR--LSTSICKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEAS-NIK--ELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 77 ~~--~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~~~~L~~L~l~~~~~ 147 (369)
+. ++..+.++++|++|++++|..... ++.....+++|++|++++|. .++ .+...+..+++|+.|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 32 334344577777777777653222 22223355667777776554 111 1222234456777777766533
Q ss_pred CCCCCcccCCCcchhhhccCcc-------------------------------cCCCCCccccCCCCCcEEEeccCCCcC
Q 017559 148 LGSLPESLGNLKSLERLHAGLL-------------------------------AIPQAPSSIVDLNKLETLSLFECRGLV 196 (369)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~l~~~-------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~ 196 (369)
.+.++..+..+++|+++++..+ ....++..+..+++|++|++++|....
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 3333333344444555443322 112233333456788888888887321
Q ss_pred --CCcccCCCCCCcEEeccCCCCcc--CCCCCCCCCCCCEEEc
Q 017559 197 --LPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNL 235 (369)
Q Consensus 197 --~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l 235 (369)
+...+..+++|++|++++| +.+ +......+++|++|++
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 2223557788888888887 322 2211234566777776
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=4.6e-20 Score=177.96 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=108.1
Q ss_pred CCCCccEEecCCCCCccccC----CccCCeeEEEcCCc-cccc--cCcccCCCCCCCEEeCcCccccccc----chhhcc
Q 017559 17 HFISSIKIDCYKCVNLREFP----RISGNVVELNLMCT-PIEE--VPLSIECLPNLETLEMSFCNSLKRL----STSICK 85 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~ 85 (369)
.+++|++|++++|......+ ...++|++|+++++ .++. ++..+..+++|++|++++|...... +.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57788888888876322222 12348888888555 5543 4444556788888888877643322 222235
Q ss_pred CCcCcEEecCCCc-Cc--ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCC----------------
Q 017559 86 LKSLRSLDLSYCI-NL--ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT---------------- 146 (369)
Q Consensus 86 l~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------- 146 (369)
+++|++|++++|. .. ..+...+..+++|++|++++|...+.++..+..+++|+.|++.++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 6688888887764 11 1122334556778888887765555555556666666666644331
Q ss_pred ---CCC-----------CCCcccCCCcchhhhccCcccCCC--CCccccCCCCCcEEEeccCCC-cCCCcccCCCCCCcE
Q 017559 147 ---KLG-----------SLPESLGNLKSLERLHAGLLAIPQ--APSSIVDLNKLETLSLFECRG-LVLPPLLSGLSSLKK 209 (369)
Q Consensus 147 ---~~~-----------~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~ 209 (369)
.+. .++..+..+++|++|++++|.++. +...+..+++|++|++.+|.. ..++.....+++|++
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 111 111112245677777777776442 122244566777777766521 111112223555666
Q ss_pred Eec
Q 017559 210 LEL 212 (369)
Q Consensus 210 L~l 212 (369)
|++
T Consensus 343 L~L 345 (594)
T 2p1m_B 343 LRV 345 (594)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=4.6e-17 Score=154.42 Aligned_cols=183 Identities=22% Similarity=0.231 Sum_probs=92.5
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.|+++++.++.+|..+ +++|++|++++|... .+| ..+++|++|++++|.... +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 4555555555555555433 245555555554333 344 234555555555543322 443 322 555555554
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.. +.+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|....+|.
T Consensus 130 N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQL-TMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCC-SCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcC-CCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 432 22333 34555555555543 223433 34555556666665555554 33 556666666665555554
Q ss_pred cCCCCCC-------cEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC-ccchhh
Q 017559 201 LSGLSSL-------KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSI 247 (369)
Q Consensus 201 ~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~ 247 (369)
+.. +| +.|++++|.+..+|..+..+++|+.|++++|.++ .+|..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 332 44 6666666666665555555666666666666655 344433
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.3e-17 Score=142.11 Aligned_cols=167 Identities=28% Similarity=0.331 Sum_probs=90.7
Q ss_pred CCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeE
Q 017559 61 CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140 (369)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 140 (369)
.+++|++|++++|.. ..++. +..+++|++|++++|.... ++. +..+++|++|++++|. ++
T Consensus 44 ~l~~L~~L~l~~~~i-~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~--------------- 103 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK-VK--------------- 103 (291)
T ss_dssp HHHTCCEEECTTSCC-CCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CC---------------
T ss_pred hcCcccEEEccCCCc-ccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc-CC---------------
Confidence 345555555555432 22222 4455555555555543322 222 4455555555555433 22
Q ss_pred eecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccC
Q 017559 141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220 (369)
Q Consensus 141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 220 (369)
.++ .+..+++|++|++++|.+..+ +.+..+++|+.|++++|....+ ..+..+++|+.|++++|.+.++
T Consensus 104 ---------~~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 104 ---------DLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp ---------CGG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC
T ss_pred ---------CCh-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc
Confidence 222 244455555555555555444 3345556666666666665544 3455666666666666666665
Q ss_pred CCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccc
Q 017559 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+. +..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred hh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 44 5666677777777776666653 566677777777666
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.5e-16 Score=150.90 Aligned_cols=178 Identities=21% Similarity=0.242 Sum_probs=146.9
Q ss_pred CCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeec
Q 017559 64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 143 (369)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (369)
+|+.|++++|... .+|..+ .++|++|++++|... .+| ..+++|++|++++|.. +.+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECC
Confidence 8999999997654 477655 488999999997654 677 5689999999997754 44666 544 99999999
Q ss_pred CCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCC
Q 017559 144 GCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD 223 (369)
Q Consensus 144 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 223 (369)
+|.. +.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|....+|. +. ++|+.|++++|.+..+|.
T Consensus 129 ~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 129 NNQL-TMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CCcC-CCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 9654 44765 68899999999999998877 57899999999999888888 55 899999999999999887
Q ss_pred CCCCCCC-------CEEEcCCCCCCccchhhccCCCCCEeccccccccc
Q 017559 224 IGCLSSL-------ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQ 265 (369)
Q Consensus 224 ~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 265 (369)
+.. +| +.|++++|.++.+|..+..+++|+.|++++|+.-.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 543 77 99999999999999988889999999999995433
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.2e-16 Score=131.22 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=32.3
Q ss_pred cCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC-ccchhhccCC
Q 017559 179 VDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLS 251 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~ 251 (369)
..+++|++|++++|....++. .+..+++|+.|++++|.+. ..+++|++|+++.|.++ .+|..++.++
T Consensus 121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 334444555554444333332 2344555555555555332 23445566666665555 5555444443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.1e-16 Score=138.27 Aligned_cols=170 Identities=24% Similarity=0.263 Sum_probs=124.3
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|+.|+++++.+..++. +..+++|++|++++|.... ++. +.++++|++|++++|... .++ .+..+++|++|++++
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCC
Confidence 78888887777777654 6677888888888865543 333 777888888888876543 333 377788888888886
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.. +.+ ..+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|....++.
T Consensus 122 n~i-~~~-~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 122 NGI-SDI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp SCC-CCC-GGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CcC-CCC-hhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 653 333 3567788888888888653 333 457778888888888888887765 7788888888888888777664
Q ss_pred cCCCCCCcEEeccCCCCccCC
Q 017559 201 LSGLSSLKKLELGDCEIMEIP 221 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~ 221 (369)
+..+++|+.|++++|.+...+
T Consensus 196 l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GTTCTTCSEEEEEEEEEECCC
T ss_pred hccCCCCCEEECcCCcccCCc
Confidence 778888899998888877643
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.2e-16 Score=131.54 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=79.5
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|++|+++++.++.++ .+..+++|++|++++|. ...++ .+..+++|++|++++|......+..+..+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 6666666666666655 35666666666666652 22222 355566666666666555444455556666666666665
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCC
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR 193 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 193 (369)
|......+..+..+++|+.|++++|..++.++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 55444445555566666666666654344443 3444444444444444444433 33344444444444443
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.5e-16 Score=129.99 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=82.6
Q ss_pred EEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCc
Q 017559 23 KIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 100 (369)
.++.+++. +..+|.... ++++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus 11 ~v~c~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQG-RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCC-ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 44444444 444443332 55555555555544433 2344555555555554333222223344555555555544333
Q ss_pred ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-cc
Q 017559 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IV 179 (369)
Q Consensus 101 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 179 (369)
...+..+..+ ++|+.|++++|......+..+..+++|+.|++++|.++.++.. +.
T Consensus 90 ~~~~~~~~~l------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 90 SLPNGVFDKL------------------------TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCTTTTTTC------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccCHhHhcCc------------------------cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 2222233444 4444444444332222222244455555555555555544432 45
Q ss_pred CCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCcc-CCCCCCCCC
Q 017559 180 DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLS 228 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 228 (369)
.+++|++|++++|.. ...+++|+.|+++.|.+.+ +|.+++.++
T Consensus 146 ~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 566666666666642 2334566666666666665 555554443
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=6.4e-18 Score=160.90 Aligned_cols=182 Identities=20% Similarity=0.207 Sum_probs=95.3
Q ss_pred CCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc-------------CcccCchhhhccCccceec-cccccccc
Q 017559 60 ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI-------------NLESFPEILEKMELLEEIN-LEEASNIK 125 (369)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 125 (369)
..+++|+.|++++|. ...+|..++.+.+|+.|+++++. .....|..++.+++|+.|+ ++.+ ...
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 456677777777753 34667667777777777775542 2233445556666666666 3322 111
Q ss_pred ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCC
Q 017559 126 ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLS 205 (369)
Q Consensus 126 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 205 (369)
.++ .+.+.++. +..++ ...|+.|++++|.++.+|. +..+++|+.|++++|....+|..+..++
T Consensus 424 ~L~----------~l~l~~n~-i~~l~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 486 (567)
T 1dce_A 424 DLR----------SKFLLENS-VLKME-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALR 486 (567)
T ss_dssp HHH----------HHHHHHHH-HHHHH-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCT
T ss_pred hhh----------hhhhhccc-ccccC-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCC
Confidence 111 01111100 00000 0124455555555555544 5555556666665555555555555555
Q ss_pred CCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCcc--chhhccCCCCCEeccccc
Q 017559 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL--PTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~ 261 (369)
+|+.|++++|.++++| .+..+++|++|++++|.++.+ |..++.+++|+.|++++|
T Consensus 487 ~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 487 CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 6666666666555554 455555666666666655544 555555666666666655
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=127.44 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=89.0
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc--ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
+.++++++. ++.+|..+. .+++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 467777766 667776555 67777777777776532 35667777777777765544444456677777777777765
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccC
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAI 171 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (369)
.....+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5544555566666666666665554444445555555666666655443333344444444444444444443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.6e-15 Score=145.33 Aligned_cols=191 Identities=24% Similarity=0.278 Sum_probs=120.3
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
.+..+.+....+..+.. +..+++|+.|++++|.. ..++ .+..+++|+.|++++|.... ++. +..+++|++|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcC
Confidence 34444555555554332 45567788888887654 3444 36778888888888865443 333 67788888888876
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.. ..++ .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|....++.
T Consensus 97 N~l-~~l~-~l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKI-KDLS-SLKDLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCC-CCCT-TSTTCTTCCEEECTTSCC-CCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCC-CCCh-hhccCCCCCEEEecCCCC-CCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 543 3333 466677777777777543 3332 466667777777777766665 456666677777777766555544
Q ss_pred cCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCcc
Q 017559 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL 243 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 243 (369)
+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.+...
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 566666777777777666653 356666677777776665543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.8e-15 Score=126.70 Aligned_cols=124 Identities=20% Similarity=0.161 Sum_probs=76.4
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcC
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (369)
+.++++++. +..+|..++ +++.|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus 14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 466777666 677776544 77777777777776654 566777777777777665555566677777777777777654
Q ss_pred cccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCC
Q 017559 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT 146 (369)
Q Consensus 100 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 146 (369)
....+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 43333445566666666666554433334445555555555555543
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=5.3e-16 Score=148.60 Aligned_cols=193 Identities=23% Similarity=0.231 Sum_probs=148.7
Q ss_pred CCCCccEEecCCCCCccccCCc--cCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEec
Q 017559 17 HFISSIKIDCYKCVNLREFPRI--SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (369)
.+..+..+++..+. +..+... +.+|+.|+++++.+..++. +..+++|+.|+|++|.... ++. +..+++|+.|++
T Consensus 19 ~l~~l~~l~l~~~~-i~~~~~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSC-TTSEECHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCC-cccccchhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEEC
Confidence 34455666666655 4444332 3389999999988888774 7889999999999976544 444 788999999999
Q ss_pred CCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017559 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|... .++ .+..+++|++|++++|... .+ ..+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|.+..+
T Consensus 95 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCC-CCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCC-CCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECcCCcCCCc
Confidence 997544 344 6788999999999977643 34 3578899999999998654 444 4688899999999999998877
Q ss_pred CccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCC
Q 017559 175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP 221 (369)
Q Consensus 175 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 221 (369)
+. +..+++|+.|++++|....++ .+..+++|+.|++++|.+...+
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred hh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 66 888999999999999877765 4788899999999999887754
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3.6e-16 Score=128.74 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=95.2
Q ss_pred ccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017559 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163 (369)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (369)
..+++|++|++++|... .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|......+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34555666666554332 334 4555666666666655 22222 24555666666666665544434455666677777
Q ss_pred hccCcccCCC-CCccccCCCCCcEEEeccCC-CcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC
Q 017559 164 LHAGLLAIPQ-APSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 164 L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
|++++|.+.. .+..+..+++|++|++++|. ...++ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|.+.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 7777776663 34556677788888888876 66665 4677788888888888887765 5677788888888888654
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=8.6e-18 Score=160.04 Aligned_cols=185 Identities=22% Similarity=0.214 Sum_probs=135.8
Q ss_pred ccCCcCcEEecCCCcCcccCchhhhccCccceeccccccc-------------ccccchhhhcccCCCeEe-ecCCCCCC
Q 017559 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN-------------IKELPSSIENLEGLKQLK-LTGCTKLG 149 (369)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------------~~~~~~~~~~~~~L~~L~-l~~~~~~~ 149 (369)
..+++|+.|++++|. .+.+|..++++++|++|+++++.. .+..|..+..+++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n---- 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA---- 420 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH----
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc----
Confidence 457888888888854 457888888899999988865432 122233344444444444 2211
Q ss_pred CCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCC
Q 017559 150 SLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSS 229 (369)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (369)
.+.+|..+.+.+|.+..++. ..|+.|++++|....+|. +..+++|+.|++++|.+..+|..++.+++
T Consensus 421 -------~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 487 (567)
T 1dce_A 421 -------YLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRC 487 (567)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred -------ccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCC
Confidence 12234444444454443322 359999999999888887 89999999999999999999999999999
Q ss_pred CCEEEcCCCCCCccchhhccCCCCCEeccccccccccC--CC---cCcccceecccCCcccccCC
Q 017559 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL--PE---LPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~---~~~~L~~L~l~~c~~L~~l~ 289 (369)
|++|++++|.++.+| .++.+++|++|++++| .++.+ |. ..++|+.|++++++ +..++
T Consensus 488 L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 488 LEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred CCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 999999999999998 8999999999999998 67766 44 34778999998874 44443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=1.9e-15 Score=136.50 Aligned_cols=170 Identities=20% Similarity=0.176 Sum_probs=124.3
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccC-CCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIE-CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
+.++++++. +..+|..+. .++.|++++|.++.++. .+. .+++|++|++++|......+..+.++++|++|++++|.
T Consensus 21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 678888877 888887665 88899999999887765 355 78899999999877665555678889999999999877
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCccc----CCCcchhhhccCcccCCCC
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL----GNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~ 174 (369)
.....+..+..+++|++|++++|......+..+..+++|+.|++++|. +..++..+ ..+++|+.|++++|.+..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 655555678888889999998777655556677888888888888854 44444432 4577777777777777766
Q ss_pred Cc-cccCCCC--CcEEEeccCC
Q 017559 175 PS-SIVDLNK--LETLSLFECR 193 (369)
Q Consensus 175 ~~-~~~~~~~--L~~L~l~~~~ 193 (369)
+. .+..++. ++.|++.+|+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhhhccHhhcceEEecCCC
Confidence 53 3444444 3667777665
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=4.6e-15 Score=124.22 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=89.0
Q ss_pred eEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccc
Q 017559 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
+.++.++++++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777777776443 577888888766554444466777778888887766555556666777777777777554
Q ss_pred cccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCc-cc
Q 017559 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LL 201 (369)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 201 (369)
.....+..+..+++|+.|++++|......+. .+..+++|+.|++++|....++. .+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVD-----------------------AFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHH-----------------------HcCCCCCCCEEECCCCcCCEECHHHH
Confidence 3322223344555555555555443333233 34445555555555555444443 35
Q ss_pred CCCCCCcEEeccCCCC
Q 017559 202 SGLSSLKKLELGDCEI 217 (369)
Q Consensus 202 ~~~~~L~~L~l~~~~~ 217 (369)
..+++|+.|++++|++
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 5566666666666654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=6.1e-16 Score=133.28 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeec
Q 017559 64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 143 (369)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 143 (369)
++..++++.+.. ..++ .+..+++|++|++++|.. ..++ .+..+++|++|++++|. ++.++. +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSV-TDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCT-TSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCc-cccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECC
Confidence 344445554322 2233 245566666666666432 2333 45555566666665443 222332 4555555555555
Q ss_pred CCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCC
Q 017559 144 GCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD 223 (369)
Q Consensus 144 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 223 (369)
+ |.+..++.... ++|+.|++++|....++ .+..+++|+.|++++|.+.+++ .
T Consensus 94 ~------------------------N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~ 145 (263)
T 1xeu_A 94 R------------------------NRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-M 145 (263)
T ss_dssp S------------------------SCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-G
T ss_pred C------------------------CccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-H
Confidence 5 44443332211 44555555555444433 2444555555555555555443 3
Q ss_pred CCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccc
Q 017559 224 IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 224 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+..+++|++|++++|.++.+ ..+..+++|+.|++++|
T Consensus 146 l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 44455555555555555544 33445555555555554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=1.9e-15 Score=136.50 Aligned_cols=174 Identities=20% Similarity=0.110 Sum_probs=123.5
Q ss_pred eeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhc-cCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSIC-KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
-+.++++++.++.+|..+. +.++.|++++|......+..+. ++++|++|++++|......+..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3578888888888886543 5689999999876555455565 789999999999876665667788899999999997
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc----cCCCCCcEEEeccCCCcC
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI----VDLNKLETLSLFECRGLV 196 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~ 196 (369)
|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++..+ ..+++|+.|++++|....
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 7654444556778888888888886655444566777778888888888777776544 356777777777777665
Q ss_pred CCc-ccCCCCC--CcEEeccCCCC
Q 017559 197 LPP-LLSGLSS--LKKLELGDCEI 217 (369)
Q Consensus 197 ~~~-~~~~~~~--L~~L~l~~~~~ 217 (369)
++. .+..++. ++.|++.+|.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 552 3344443 35566666654
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.7e-15 Score=129.20 Aligned_cols=165 Identities=24% Similarity=0.271 Sum_probs=130.9
Q ss_pred ccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEE
Q 017559 109 KMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLS 188 (369)
Q Consensus 109 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 188 (369)
.+.++..+++.++. ++.++ .+..+++|+.|++++|. +..++ .+..+++|+.|++++|.+..++. +..+++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 45556666676443 34444 46677888888888864 45555 57788899999999999888876 88899999999
Q ss_pred eccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCC
Q 017559 189 LFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP 268 (369)
Q Consensus 189 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 268 (369)
+++|....++.... ++|+.|++++|.+.+++ .+..+++|++|++++|.++.++ .+..+++|++|++++| .++++.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~ 166 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTG 166 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCT
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchH
Confidence 99999888776433 89999999999999875 4888999999999999999886 6889999999999998 566553
Q ss_pred C--cCcccceecccCCc
Q 017559 269 E--LPLLLVMLGASDCK 283 (369)
Q Consensus 269 ~--~~~~L~~L~l~~c~ 283 (369)
. ..++|+.|++++++
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 3 34678888888764
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=122.13 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=87.9
Q ss_pred eEEEcCCccccccCcccCCCCCCCEEeCcCcccccccc-hhhccCCcCcEEecCCCcCcccCchhhhccCccceeccccc
Q 017559 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
++++++++.++.+|..+ .+.+++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46777777777777644 2456778888765544323 34667777777777776554444456666777777777765
Q ss_pred ccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCC-Ccc
Q 017559 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPL 200 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~ 200 (369)
......+..+..+++|+.|++++|......+.. +..+++|+.|++++|....+ |..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-----------------------FIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-----------------------STTCTTCSEEECTTSCCCCBCTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-----------------------cCCCccCCEEECCCCcCCEECHHH
Confidence 544444444555666666666654433333333 44445555555555554433 344
Q ss_pred cCCCCCCcEEeccCCCCc
Q 017559 201 LSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~ 218 (369)
+..+++|+.|++++|.+.
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 555556666666665543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=1.5e-14 Score=121.91 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEee
Q 017559 63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKL 142 (369)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 142 (369)
++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 34444444444333333333444444444444443332222233344444444444433322222223344445555555
Q ss_pred cCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-cccCCCCCcEEEeccCC
Q 017559 143 TGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECR 193 (369)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 193 (369)
++|. +..+|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+
T Consensus 120 s~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4432 23444444555555555555555554442 34455666666666655
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.1e-14 Score=122.64 Aligned_cols=150 Identities=18% Similarity=0.102 Sum_probs=84.3
Q ss_pred CEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCC
Q 017559 66 ETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 145 (369)
+.++.++ .....+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 22 ~~v~c~~-~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccC-CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4455544 2333444333 256666666665555544555666666666666655432222334556666666666665
Q ss_pred CCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCc
Q 017559 146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 218 (369)
......+..+..+++|+.|++++|.+..+|..+..+++|+.|++++|....++. .+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 433333333456666666666666666666666666666666666666555542 4555666666666666543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=7.3e-15 Score=117.62 Aligned_cols=131 Identities=24% Similarity=0.293 Sum_probs=94.2
Q ss_pred cCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcC-CCcccCCCCCCcEEec
Q 017559 135 EGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLEL 212 (369)
Q Consensus 135 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 212 (369)
++++.|++++|... ..+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.... +|..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 56666666665533 35555556666777777777766665 566777788888888887655 5655666788888888
Q ss_pred cCCCCccCC--CCCCCCCCCCEEEcCCCCCCccch----hhccCCCCCEeccccccccccC
Q 017559 213 GDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT----SISQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 213 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~l~~~ 267 (369)
++|.+.+++ ..+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~ 162 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEA 162 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhc
Confidence 888887755 567788888888888888887765 6778888888888888 34443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.2e-14 Score=113.99 Aligned_cols=125 Identities=24% Similarity=0.280 Sum_probs=89.1
Q ss_pred ccCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcC-CCcccCCCCCCcEEe
Q 017559 134 LEGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLE 211 (369)
Q Consensus 134 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 211 (369)
.++++.|++++|... +.++..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.... +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777776543 35565566677777777777777666 566677788888888877655 555556677888888
Q ss_pred ccCCCCccCC--CCCCCCCCCCEEEcCCCCCCccch----hhccCCCCCEeccc
Q 017559 212 LGDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT----SISQLSRLRWLYLV 259 (369)
Q Consensus 212 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~ 259 (369)
+++|.+.+++ ..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888877743 557778888888888888776664 56778888888775
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.8e-14 Score=115.36 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=76.5
Q ss_pred CCcCcEEecCCCcCc-ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhh
Q 017559 86 LKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERL 164 (369)
Q Consensus 86 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 164 (369)
.++|++|++++|... ..+|..+..+++|++|++++|. ++ .+ ..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~------------------------~~-~~~~~l~~L~~L 76 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LI------------------------SV-SNLPKLPKLKKL 76 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CC------------------------CC-SSCCCCSSCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CC------------------------Ch-hhhccCCCCCEE
Confidence 355666666665433 2444444555555555555443 22 22 334445555555
Q ss_pred ccCcccCCC-CCccccCCCCCcEEEeccCCCcCCC--cccCCCCCCcEEeccCCCCccCCC----CCCCCCCCCEEEcCC
Q 017559 165 HAGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLELGDCEIMEIPP----DIGCLSSLESLNLSG 237 (369)
Q Consensus 165 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~ 237 (369)
++++|.+.. ++..+..+++|+.|++++|....++ ..+..+++|+.|++++|.+...+. .+..+++|++|++++
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 555555554 3344444666666666666655544 456666777777777777766655 466677777777777
Q ss_pred CCCCccch
Q 017559 238 NNIESLPT 245 (369)
Q Consensus 238 ~~l~~~~~ 245 (369)
|.+..+|+
T Consensus 157 n~~~~~~~ 164 (168)
T 2ell_A 157 REDQEAPD 164 (168)
T ss_dssp TTSCBCCS
T ss_pred CChhhccc
Confidence 76666554
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.7e-13 Score=112.12 Aligned_cols=127 Identities=21% Similarity=0.207 Sum_probs=101.4
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCc--ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
++++++++. ++.+|..+. ++++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 688888887 788887655 89999998888887765 37888899999999887776667778888999999999877
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCC
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG 149 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 149 (369)
.....+..+..+++|++|++++|...+..+..+..+++|+.|++++|....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 666666678888888888888777666667777888888888888866443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=2.9e-13 Score=110.78 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=98.2
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCc
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 100 (369)
++++++++. +..+|..+. ++++|+++++.++.+|..+..+++|++|++++|......+..|.++++|++|++++|...
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 578888887 788887555 899999999888888888888899999999987766655667888899999999987766
Q ss_pred ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCC
Q 017559 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 101 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 147 (369)
...+..+..+++|++|++++|......+..+..+++|+.|++++|..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66666788888888888887665443344577788888888887653
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=4.3e-14 Score=138.63 Aligned_cols=153 Identities=21% Similarity=0.198 Sum_probs=105.0
Q ss_pred ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCC
Q 017559 126 ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLS 205 (369)
Q Consensus 126 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 205 (369)
..+..+..++.|+.|++++|. +..++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|....+|..+..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 345567778888888888855 4467777778888999999999888888888889999999999999888888888889
Q ss_pred CCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC-ccchhhccCC-CCCEeccccccccccCCCcCcccceecccCC
Q 017559 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLS-RLRWLYLVNCVKLQSLPELPLLLVMLGASDC 282 (369)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c 282 (369)
+|++|++++|.+..+|..++.+++|++|+|++|.++ .+|..+.... .+..+++++|..-. ..+..++.|++.++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~---~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI---PLPHERRFIEINTD 369 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC---------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC---cCccccceeEeecc
Confidence 999999999999888888888999999999999888 4444443321 12235566653221 23345555655544
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=3.3e-13 Score=105.63 Aligned_cols=124 Identities=17% Similarity=0.070 Sum_probs=73.7
Q ss_pred CCCccEEecCCCCCcc--ccCCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEE
Q 017559 18 FISSIKIDCYKCVNLR--EFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL 92 (369)
Q Consensus 18 ~~~L~~L~l~~~~~~~--~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (369)
.++++.|++++|. +. .+|..+. +|++|+++++.++.+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4567777777776 44 5554433 677777766666655 446666677777777665554455555556777777
Q ss_pred ecCCCcCccc-CchhhhccCccceecccccccccccc---hhhhcccCCCeEeec
Q 017559 93 DLSYCINLES-FPEILEKMELLEEINLEEASNIKELP---SSIENLEGLKQLKLT 143 (369)
Q Consensus 93 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 143 (369)
++++|..... .+..+..+++|++|++++|......+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7766543331 22556666677777776654333222 245566666666553
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2e-14 Score=141.04 Aligned_cols=113 Identities=20% Similarity=0.168 Sum_probs=52.9
Q ss_pred CcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhccc
Q 017559 56 PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLE 135 (369)
Q Consensus 56 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 135 (369)
+..+..+++|+.|+|++|... .++..+.++++|++|+|++|... .+|..+..+++|++|++++|.. +.+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCC
Confidence 334445555555555554332 34433444555555555554332 4455455555555555554432 24444455555
Q ss_pred CCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017559 136 GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
+|+.|++++|. ++.+|..++.+++|+.|++++|.+.
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 55555555532 3344444555555555555555544
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.4e-13 Score=111.08 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=74.9
Q ss_pred hcccCCCeEeecCCCCCCCCCcccCCC-cchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcc-cCCCCCCcE
Q 017559 132 ENLEGLKQLKLTGCTKLGSLPESLGNL-KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKK 209 (369)
Q Consensus 132 ~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 209 (369)
.++.+|+.|++++|. +..++. +..+ ++|+.|++++|.+..+ ..+..+++|++|++++|....++.. +..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344556666666543 223332 2222 2566666666665554 4455566666666666665555533 255666666
Q ss_pred EeccCCCCccCCC--CCCCCCCCCEEEcCCCCCCccchh----hccCCCCCEecccccc
Q 017559 210 LELGDCEIMEIPP--DIGCLSSLESLNLSGNNIESLPTS----ISQLSRLRWLYLVNCV 262 (369)
Q Consensus 210 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~~~ 262 (369)
|++++|.+.+++. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666666665554 455666777777777766666553 5666777777776663
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=8.4e-13 Score=107.95 Aligned_cols=128 Identities=20% Similarity=0.152 Sum_probs=87.1
Q ss_pred eEEEcCCccccccCcccCCCCCCCEEeCcCcccccccch-hhccCCcCcEEecCCCcCcccCchhhhccCccceeccccc
Q 017559 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST-SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
+++++++++++.+|..+. .+|++|++++|......+. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 577888888888886543 3788888888755443332 3777888888888887666666777788888888888876
Q ss_pred ccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017559 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
......+..+..+++|+.|++++|...+..+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 655544555666777777777776554444555555566666666555544
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=3.9e-13 Score=119.72 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=54.0
Q ss_pred CCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCC-CCCCCCCCCC-EEEcCCCCCCccc-hhhccCCCCCEe
Q 017559 181 LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLE-SLNLSGNNIESLP-TSISQLSRLRWL 256 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~-~L~l~~~~l~~~~-~~~~~~~~L~~L 256 (369)
+++|+.+++.+|....++. .|.++.+|+.+++.++ +..++ ..+..+.+|+ .+++.+ .++.++ ..+.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5677777777766655554 5667777777777766 55543 3366677777 777776 566554 455667777777
Q ss_pred ccccccccccCC
Q 017559 257 YLVNCVKLQSLP 268 (369)
Q Consensus 257 ~l~~~~~l~~~~ 268 (369)
++.++ .++.++
T Consensus 303 ~l~~n-~i~~I~ 313 (329)
T 3sb4_A 303 LATGD-KITTLG 313 (329)
T ss_dssp EECSS-CCCEEC
T ss_pred EeCCC-ccCccc
Confidence 77554 444443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=1.4e-12 Score=105.11 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=94.0
Q ss_pred CCCcCCCCccEEecCCCCCccccCCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcC
Q 017559 13 PQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSL 89 (369)
Q Consensus 13 p~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 89 (369)
|....+++|++|++++|. +..++.... +|++|++++|.++.+ ..+..+++|++|++++|......+..+..+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344477888999999887 667665332 788888888888877 457888888888888876553333444778888
Q ss_pred cEEecCCCcCcccCch--hhhccCccceecccccccccccch----hhhcccCCCeEeecCCC
Q 017559 90 RSLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKELPS----SIENLEGLKQLKLTGCT 146 (369)
Q Consensus 90 ~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~ 146 (369)
++|++++|.. ..++. .+..+++|++|++++|... .++. .+..+++|+.|+++++.
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888754 45554 6778888888888876543 4444 36778888888877653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=4.5e-12 Score=103.60 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=60.8
Q ss_pred eEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccc
Q 017559 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
+.++++++.++.+|..+ .++|++|++++|.. ..+|..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45667777777777543 25677777777544 3555666777777777777765554444556666666666666554
Q ss_pred cccccchhhhcccCCCeEeecCC
Q 017559 123 NIKELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~ 145 (369)
.....+..+..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCC
Confidence 43333344555555555555553
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=1.1e-11 Score=99.81 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=86.3
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
.+.++++++. +..+|.... +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4677777776 677775444 88888888888776664 45777888888888876554434456778888888888876
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCC
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 148 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 148 (369)
.....+..+..+++|++|++++|......+..+..+++|+.|++++|...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 55444455677788888888766543333334566777777777776533
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=4.4e-12 Score=112.90 Aligned_cols=227 Identities=16% Similarity=0.107 Sum_probs=124.3
Q ss_pred CeeEEEcCCcccc-ccCcccCC-CCCCCEEeCcCcccc--cccchhhccCCcCcEEecCCCcCcccCchhhhc-------
Q 017559 41 NVVELNLMCTPIE-EVPLSIEC-LPNLETLEMSFCNSL--KRLSTSICKLKSLRSLDLSYCINLESFPEILEK------- 109 (369)
Q Consensus 41 ~L~~L~l~~~~~~-~l~~~~~~-l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------- 109 (369)
+++.|.++++--. ++. .+.. +++|++|+|++|... ..... .++.++.+.+..+ ..-...|..
T Consensus 26 ~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN---FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT---EECTTTTEEEETTEEE
T ss_pred ceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc---ccCHHHhccccccccc
Confidence 7888888653211 111 1222 788999999987655 11111 1222333443332 112244556
Q ss_pred -cCccceeccccccccccc-chhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc----CCCC-CccccCCC
Q 017559 110 -MELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA----IPQA-PSSIVDLN 182 (369)
Q Consensus 110 -l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~-~~~~~~~~ 182 (369)
|++|+++++.+ .+..+ ..+|.++++|+.+++..+......+..+..+.++..+...... ...+ ...+..+.
T Consensus 99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77888888774 33433 3467777888888887754433333445556555555544321 1111 11233344
Q ss_pred CCc--------------------------EEEeccCCCcCCC-cccCCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEE
Q 017559 183 KLE--------------------------TLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLN 234 (369)
Q Consensus 183 ~L~--------------------------~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~ 234 (369)
.|+ .+.+.+.-...-. .....+++|+.+++++|.+..++.. +..+.+|++++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 444 2222221100000 0011367888899988888886553 77888899998
Q ss_pred cCCCCCCccc-hhhccCCCCC-EeccccccccccCCC----cCcccceecc
Q 017559 235 LSGNNIESLP-TSISQLSRLR-WLYLVNCVKLQSLPE----LPLLLVMLGA 279 (369)
Q Consensus 235 l~~~~l~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~~----~~~~L~~L~l 279 (369)
+.+| ++.++ ..+.++++|+ .+++.+ .++.++. ...+|+.+++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence 8887 77666 4567888888 888876 5555543 1245555555
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=1.3e-10 Score=105.77 Aligned_cols=228 Identities=10% Similarity=0.113 Sum_probs=134.6
Q ss_pred CCccEEecCCCCCccccCCc-cC--CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEec
Q 017559 19 ISSIKIDCYKCVNLREFPRI-SG--NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~-~~--~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (369)
..++.+.+-+. ++.++.. +. +|+.+.+..+ ++.+.. .|.. .+|+.+.+.. .....-...|.+|.+|+.+++
T Consensus 113 ~~l~~i~ip~~--i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS--VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc--cCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555432 4444422 11 6777777443 555544 3444 3577777765 222222346677777887777
Q ss_pred CCCcCcccCchhhhccCccceecccccccccc-cchhhhcccCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC
Q 017559 95 SYCINLESFPEILEKMELLEEINLEEASNIKE-LPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 172 (369)
..+.....-...|. +.+|+.+.+.. . +.. -..+|.++++|+.+.+..+ +..++. .+.. .+|+.+.+ .+.+.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-T-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-c-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-CCCcc
Confidence 76433332223333 57777777762 2 333 3346677777777777652 333332 2334 56777777 33344
Q ss_pred CCC-ccccCCCCCcEEEeccCCCc-----CCC-cccCCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEcCCCCCCccc
Q 017559 173 QAP-SSIVDLNKLETLSLFECRGL-----VLP-PLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESLP 244 (369)
Q Consensus 173 ~~~-~~~~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~ 244 (369)
.++ ..|..|++|+.+.+.++... .++ ..|.+|++|+.+.+.+ .+..+. ..+..|.+|+.+.+..+ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 442 45677888888888776543 233 4677888888888874 355543 34677888888888554 66554
Q ss_pred -hhhccCCCCCEeccccc
Q 017559 245 -TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 245 -~~~~~~~~L~~L~l~~~ 261 (369)
..+..+ +|+.+++.++
T Consensus 339 ~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTSSSSS-CCCEEEECCS
T ss_pred HHhCCCC-CCCEEEEcCC
Confidence 455667 8888888877
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.3e-11 Score=99.45 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=71.0
Q ss_pred eeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceeccccc
Q 017559 42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
.+.+++++++++.+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345677777777766433 357777777776554333344566777777777776544333344566666667666655
Q ss_pred ccccccchhhhcccCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC
Q 017559 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 172 (369)
......+..+..+++|+.|++++|... .++. .+..+++|+++++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 433333334455556666666554332 2222 2344445555555544443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.3e-14 Score=119.48 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEE
Q 017559 157 NLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLN 234 (369)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~ 234 (369)
.+++|+.|++++|.+..+|..+..+++|+.|++++|....++ .+..+++|+.|++++|.+..++. .+..+++|++|+
T Consensus 68 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 68 GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred cCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 333344444444444444444444455555555555544433 24444555555555555554322 345556666666
Q ss_pred cCCCCCCcc-ch----------hhccCCCCCEec
Q 017559 235 LSGNNIESL-PT----------SISQLSRLRWLY 257 (369)
Q Consensus 235 l~~~~l~~~-~~----------~~~~~~~L~~L~ 257 (369)
+++|.++.. |. .+..+++|+.|+
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 666655422 11 245566666665
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=1e-09 Score=99.88 Aligned_cols=226 Identities=12% Similarity=0.110 Sum_probs=121.8
Q ss_pred CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccc-hhhccCCcCcEEecCCCcCcccCchhhhccCccceecc
Q 017559 41 NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINL 118 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 118 (369)
.++.+.+.. .++.++. .|.++ +|+.+.+..+ ...+. .+|.+ .+|+.+.+.. .....-...|..|++|+.+++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 444555532 2344433 34443 5777777653 23332 34544 3577777765 233333456677777777777
Q ss_pred cccccccccchhhhcccCCCeEeecCCCCCCCCC-cccCCCcchhhhccCcccCCCCCc-cccCCCCCcEEEeccCCCcC
Q 017559 119 EEASNIKELPSSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLV 196 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 196 (369)
.++. +..++.....+.+|+.+.+.. . +..++ ..+..+++|+.+.+..+ +..++. .|.. .+|+.+.+..+ ...
T Consensus 188 ~~n~-l~~I~~~aF~~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~ 261 (401)
T 4fdw_A 188 SKTK-ITKLPASTFVYAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTN 261 (401)
T ss_dssp TTSC-CSEECTTTTTTCCCSEEECCT-T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCE
T ss_pred CCCc-ceEechhhEeecccCEEEeCC-c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccE
Confidence 6443 333333222356777777753 2 33332 34666777777777653 333332 2333 56777777433 333
Q ss_pred C-CcccCCCCCCcEEeccCCCCc-----cC-CCCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEeccccccccccCC
Q 017559 197 L-PPLLSGLSSLKKLELGDCEIM-----EI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLP 268 (369)
Q Consensus 197 ~-~~~~~~~~~L~~L~l~~~~~~-----~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~ 268 (369)
+ ...|.+|++|+.+.+.++... .+ ...+..|++|+.+++.+ .++.++ ..+.+|.+|+.+.+..+ ++.++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEc
Confidence 3 235667777777777666554 22 23466677777777773 455554 34566677777777443 44433
Q ss_pred C----cCcccceecccCC
Q 017559 269 E----LPLLLVMLGASDC 282 (369)
Q Consensus 269 ~----~~~~L~~L~l~~c 282 (369)
. .. +|+.+++.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTSSSSS-CCCEEEECCS
T ss_pred HHhCCCC-CCCEEEEcCC
Confidence 2 12 5666666543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.2e-13 Score=113.74 Aligned_cols=112 Identities=22% Similarity=0.226 Sum_probs=93.4
Q ss_pred CCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCC
Q 017559 149 GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLS 228 (369)
Q Consensus 149 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 228 (369)
+.+|..+..+++|++|++++|.+..++ .+..+++|+.|++++|....+|..+..+++|+.|++++|.+.+++ .+..++
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 344446777788888888888888877 788889999999999998788877777789999999999998876 477788
Q ss_pred CCCEEEcCCCCCCccch--hhccCCCCCEecccccc
Q 017559 229 SLESLNLSGNNIESLPT--SISQLSRLRWLYLVNCV 262 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~ 262 (369)
+|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 99999999999987664 67889999999999984
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.7e-10 Score=92.53 Aligned_cols=99 Identities=23% Similarity=0.387 Sum_probs=68.0
Q ss_pred hhhccCcccCCCCCccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEcCCCC
Q 017559 162 ERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNN 239 (369)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 239 (369)
+.++++++.+..+|..+. ++|+.|++++|....+ +..+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666666543 6777777777776555 34566777777777777777776554 4667777777777777
Q ss_pred CCccchh-hccCCCCCEecccccc
Q 017559 240 IESLPTS-ISQLSRLRWLYLVNCV 262 (369)
Q Consensus 240 l~~~~~~-~~~~~~L~~L~l~~~~ 262 (369)
++.++.. +..+++|++|++++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 7766654 6677777777777773
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.4e-10 Score=92.70 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=70.4
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
.+.++++++. +..+|..+. ++++|++++|.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4677888776 777776544 788888888887766 4457777888888888766554434455677788888887765
Q ss_pred CcccCchhhhccCccceeccccccc
Q 017559 99 NLESFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
.....+..+..+++|++|++++|..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 5444445577777777777776653
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.7e-10 Score=91.30 Aligned_cols=100 Identities=20% Similarity=0.158 Sum_probs=66.3
Q ss_pred cEEecCCCCCccccCCccC-CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcC
Q 017559 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (369)
+.++++++. +..+|..+. +|++|++++|.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 577777776 677776544 777778877777766 44567777777777777654433333456677777777777654
Q ss_pred cccCchhhhccCccceecccccc
Q 017559 100 LESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 100 ~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
....+..+..+++|++|++++|.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC
T ss_pred ceeCHHHhccccCCCEEEeCCCC
Confidence 43333446677777777777654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3.1e-10 Score=90.65 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=80.3
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
..+.++++++.++.+|..+ .++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4467888888888888655 37899999999876666677788899999999998766554555678888999999987
Q ss_pred cccccccchhhhcccCCCeEeecCCCC
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~ 147 (369)
|...+..+..+..+++|+.|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 765444444677888888888888654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=2.4e-11 Score=109.68 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=28.3
Q ss_pred CCcCcEEecCCCcCcccCchhhhc-----cCccceecccccccccccc-hhhhcccCCCeEeecCCC
Q 017559 86 LKSLRSLDLSYCINLESFPEILEK-----MELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCT 146 (369)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 146 (369)
+++|+.|++++|.........+.. .++|++|++++|....... .....+++|+.|++++|.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 355666666665543322222221 2466666666554322111 112234455666665543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=8.1e-09 Score=94.08 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=36.4
Q ss_pred CccCCCCc--CCCCccEEecCCCCCccccCCc-cC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcC
Q 017559 9 LRCFPQNI--HFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSF 72 (369)
Q Consensus 9 l~~~p~~~--~~~~L~~L~l~~~~~~~~~~~~-~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~ 72 (369)
++++.... .+.+|+.+.+..+ ++.+.+. +. +|+.+++..+ ++.+.. .+..+.+|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 34454433 6778888888542 5666542 22 7888888543 454443 466677777666543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.89 E-value=6.3e-11 Score=106.90 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=93.1
Q ss_pred CCCCCEEeCcCcccccccchhh----c-cCCcCcEEecCCCcCcccC-chhhhccCccceecccccccccccchhh----
Q 017559 62 LPNLETLEMSFCNSLKRLSTSI----C-KLKSLRSLDLSYCINLESF-PEILEKMELLEEINLEEASNIKELPSSI---- 131 (369)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 131 (369)
+++|+.|++++|.........+ . ...+|++|++++|...... ......+++|++|++++|.........+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578888998877654322222 2 2368999999887654332 2333456788899998775443222222
Q ss_pred -hcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcC-----CCcccCCCC
Q 017559 132 -ENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-----LPPLLSGLS 205 (369)
Q Consensus 132 -~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~ 205 (369)
...++|++|++++|.....-. ..++..+..+++|++|++++|..+. +...+...+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~-------------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGV-------------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHH-------------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred HhcCCccceeeCCCCCCChHHH-------------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 234567777777654211000 0112233445566666666666331 223445556
Q ss_pred CCcEEeccCCCCcc-----CCCCCCCCCCCCEEEcCCCCCC
Q 017559 206 SLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 206 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
+|++|++++|.+.+ +...+...++|++|++++|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 77778887777765 2222345677888888888877
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=9.3e-09 Score=91.97 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=66.5
Q ss_pred eEeecCCCCCCCCCcccCCCcchhhhccCc-ccCCCCC-ccccCCCCCcEEEeccCCCcCCC-cccCCCCCCcEEeccCC
Q 017559 139 QLKLTGCTKLGSLPESLGNLKSLERLHAGL-LAIPQAP-SSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDC 215 (369)
Q Consensus 139 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~ 215 (369)
.++.++++.+..+|. +..+++|+.|++++ |.+..++ ..|..+++|+.|++++|....++ ..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555325566776 77777777777775 7777665 35667777777777777755544 35667777777777777
Q ss_pred CCccCCCCCCCCCCCCEEEcCCCCCC
Q 017559 216 EIMEIPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
.+..++........|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 77776554333333777777777665
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=2.5e-07 Score=84.22 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=28.8
Q ss_pred cCCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEeccc
Q 017559 201 LSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLV 259 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~ 259 (369)
+..+.+|+.+.+..+ +..+. ..+..+.+|+.+++.++ ++.+. ..+.+|.+|+.+++.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 445556666655443 33322 23455666666666432 44443 344555666666554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=2.1e-08 Score=89.61 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=71.5
Q ss_pred EEecCCCCCccccCCccC---CeeEEEcCC-ccccccC-cccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 23 KIDCYKCVNLREFPRISG---NVVELNLMC-TPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~---~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
.++++++..+..+|. ++ +|++|+|++ |.++.++ ..|..+++|++|+|++|......+..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777633778887 54 688888875 8888776 46788888888888887666655667788888888888886
Q ss_pred cCcccCchhhhccCccceecccccccc
Q 017559 98 INLESFPEILEKMELLEEINLEEASNI 124 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 124 (369)
......+..+..++ |++|++.+|...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55443334455454 888888866543
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.75 E-value=8.2e-07 Score=80.75 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=43.0
Q ss_pred cccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCC
Q 017559 177 SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESLP-TSISQLSRLR 254 (369)
Q Consensus 177 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~ 254 (369)
.|..|..|+.+.+......--...+.++++|+.+.+.. .+..++ ..+..|.+|+.+++..+ ++.+. ..+.+|.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 34556666666665443222223455666666666642 233332 23556666666666543 44443 3455666666
Q ss_pred Eeccc
Q 017559 255 WLYLV 259 (369)
Q Consensus 255 ~L~l~ 259 (369)
.+.+.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66664
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=1.4e-08 Score=90.93 Aligned_cols=132 Identities=24% Similarity=0.392 Sum_probs=75.5
Q ss_pred cchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-Cccc--cCCCCCcEEEeccCC---Cc-----
Q 017559 127 LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSI--VDLNKLETLSLFECR---GL----- 195 (369)
Q Consensus 127 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~--~~~~~L~~L~l~~~~---~~----- 195 (369)
+...+..+|+|+.|.++++... .++. + .+++|+.|++..+.+..- ...+ ..+++|++|+++.+. ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3345566777888887775322 2222 2 256777777766655411 1122 256788888875321 11
Q ss_pred CCCccc--CCCCCCcEEeccCCCCcc-CC---CCCCCCCCCCEEEcCCCCCCc-----cchhhccCCCCCEeccccc
Q 017559 196 VLPPLL--SGLSSLKKLELGDCEIME-IP---PDIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 196 ~~~~~~--~~~~~L~~L~l~~~~~~~-~~---~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~ 261 (369)
.+...+ ..+++|+.|.+.+|.+.+ .. .....+++|++|+|+.|.+.. ++..+..+++|+.|++++|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111122 246788888888887754 10 011346788888888887763 3333456778888888777
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=3.7e-06 Score=76.37 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=39.4
Q ss_pred ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEecccc
Q 017559 200 LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN 260 (369)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 260 (369)
.+.++.+|+.+.+......--...+..+..|+.+.+. +.++.++ ..+.+|.+|+.+++..
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 4667778888877655332233346777888888875 3455555 4457778888888754
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=7.2e-09 Score=92.72 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=94.6
Q ss_pred CCCCCCCEEeCcCccc---------ccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchh
Q 017559 60 ECLPNLETLEMSFCNS---------LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSS 130 (369)
Q Consensus 60 ~~l~~L~~L~l~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 130 (369)
..+++|+.|.+..... ...+...+..+|+|+.|+++++... .++. + .+++|++|++..|.........
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 3456666666644211 0123344455667777777664222 2222 2 2566666666644432222222
Q ss_pred hh--cccCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCccc--cCCCCCcEEEeccCCCcC-CCc---cc
Q 017559 131 IE--NLEGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSI--VDLNKLETLSLFECRGLV-LPP---LL 201 (369)
Q Consensus 131 ~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~---~~ 201 (369)
+. .+++|+.|+++.+... ..- .. +..+...+ ..+++|+.|++.+|.... ... ..
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~-------~~----------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a 275 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFD-------GD----------MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCC-------SC----------GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred HHHccCCCCcEEEEeccccccccc-------hh----------HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence 22 4666666666421100 000 00 00111111 246889999998887431 111 11
Q ss_pred CCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEcCCCCCCcc-chhhcc-CCCCCEecccccc
Q 017559 202 SGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIESL-PTSISQ-LSRLRWLYLVNCV 262 (369)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~-~~~L~~L~l~~~~ 262 (369)
..+++|++|+++.|.+.+ +...+..+++|+.|++++|.++.- -..+.. + ...++++...
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 346889999999998876 334445678999999999987622 222221 2 3567777664
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=8e-06 Score=73.72 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=56.9
Q ss_pred CCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCC-CcccCCCCCCcEEeccCCCCccCC-CCCCCCCCCCEE
Q 017559 156 GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESL 233 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 233 (369)
..+.+++.+.+..+-..-....+..+..|+.+.+..+- ..+ ...+..+.+|+.+.+... +..++ ..+..+.+|+.+
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCCc-cEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 34444555544332111112345566777777765542 222 234566777777777543 33322 346667777777
Q ss_pred EcCCCCCCccc-hhhccCCCCCEeccc
Q 017559 234 NLSGNNIESLP-TSISQLSRLRWLYLV 259 (369)
Q Consensus 234 ~l~~~~l~~~~-~~~~~~~~L~~L~l~ 259 (369)
.+.++.++.++ ..+..|.+|+.+.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccceehhhhhcCCCCCCEEEcC
Confidence 77777777665 445677777777764
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=8e-09 Score=81.62 Aligned_cols=86 Identities=12% Similarity=0.185 Sum_probs=43.3
Q ss_pred CCCEEEcCCCCCCcc-chhhccCCCCCEeccccccccccCC-----Cc---CcccceecccCCcccccCCCchhhhHHhh
Q 017559 229 SLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLP-----EL---PLLLVMLGASDCKRLQFLPELTSCLEELD 299 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-----~~---~~~L~~L~l~~c~~L~~l~~~~~~l~~l~ 299 (369)
.|++||+++|.+++. -..+..+++|++|++++|..+++.. .. .++|++|++++|++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~--------------- 126 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN--------------- 126 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT---------------
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc---------------
Confidence 455555555554411 1233456666666666665554411 10 12344444444433
Q ss_pred HHHHHhhhccccccccCCCCCcEEEecCccCcChhh
Q 017559 300 ASILQALSNRTGERLSKHMSPVQLIFANCLKLNESI 335 (369)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 335 (369)
+++.+...+.....+..+.+++|+.+++..
T Consensus 127 ------ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 127 ------VTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ------CCHHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred ------CCHHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 333333333333444578888999888754
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.45 E-value=1.3e-05 Score=72.29 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=136.8
Q ss_pred CCccCCCCc--CCCCccEEecCCCCCccccCCcc-C--CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNI--HFISSIKIDCYKCVNLREFPRIS-G--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~--~~~~L~~L~l~~~~~~~~~~~~~-~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
++++++... .+.+|+.+++..+ ++.+.+.. . +|+.+.+.. .++.+........+|+.+.+.... ...-...
T Consensus 56 ~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~~-~~i~~~~ 131 (379)
T 4h09_A 56 GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGAT-TEIGNYI 131 (379)
T ss_dssp TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTTC-CEECTTT
T ss_pred CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCcc-ccccccc
Confidence 344555543 7888999999643 56665432 2 677666632 244444432223478888876521 1111122
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceecccccc-----------------------------------ccccc
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS-----------------------------------NIKEL 127 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----------------------------------~~~~~ 127 (369)
+..+ +|+.+.+... ....-...+..+.+++.+.+.... .....
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVT 209 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEEC
T ss_pred cccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEe
Confidence 3222 3444443321 111112223333333333322110 00111
Q ss_pred chhhhcccCCCeEeecCCCCCCCC-CcccCCCcchhhhccCcccCCCCC-ccccCCCCCcEEEeccCCCcCCC-cccCCC
Q 017559 128 PSSIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLP-PLLSGL 204 (369)
Q Consensus 128 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~ 204 (369)
...+..+.+++.+.+... +..+ ...+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+...- ..++ ..+.+|
T Consensus 210 ~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i-~~i~~~aF~~c 285 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV-KTVPYLLCSGC 285 (379)
T ss_dssp TTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC-SEECTTTTTTC
T ss_pred ecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc-eeccccccccc
Confidence 223445566666666431 2222 234667788888887654 33332 356778899999986543 3333 467889
Q ss_pred CCCcEEeccCCCCccCC-CCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEecccc
Q 017559 205 SSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN 260 (369)
Q Consensus 205 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 260 (369)
.+|+.+.+.++.+..+. ..+.+|.+|+.+.+..+ ++.+. ..+..|.+|+.+.+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99999999988888754 45788999999999754 66665 4567889999888854
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=2.4e-07 Score=73.18 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=41.3
Q ss_pred CCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccC-chhhhc----cCccceeccccccccccc-chhhhcccCC
Q 017559 64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESF-PEILEK----MELLEEINLEEASNIKEL-PSSIENLEGL 137 (369)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~----l~~L~~L~l~~~~~~~~~-~~~~~~~~~L 137 (369)
+|+.|++++|.....-...+.++++|++|++++|..+++. -..+.. +++|++|++++|..+++. -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555533332233445555555555555433321 122222 234556666555544421 1234455566
Q ss_pred CeEeecCCCCCCC
Q 017559 138 KQLKLTGCTKLGS 150 (369)
Q Consensus 138 ~~L~l~~~~~~~~ 150 (369)
++|++++|..++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 6666666554443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=2e-07 Score=75.20 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred cCCCCCcEEEeccCCCcC-----CCcccCCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEc--CCCCCCc----
Q 017559 179 VDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNL--SGNNIES---- 242 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l--~~~~l~~---- 242 (369)
...++|++|++++|.... +...+...++|++|++++|.+.+ +...+...+.|++|++ ++|.+..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 334455555555555321 12233344556666666666654 2333455566777777 5666652
Q ss_pred -cchhhccCCCCCEeccccc
Q 017559 243 -LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 243 -~~~~~~~~~~L~~L~l~~~ 261 (369)
+...+...++|++|++++|
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCcCEEeccCC
Confidence 3344455566777777666
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=1.9e-06 Score=69.48 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=46.9
Q ss_pred CeeEEEcCCc-ccc-----ccCcccCCCCCCCEEeCcCcccccc----cchhhccCCcCcEEecCCCcCccc----Cchh
Q 017559 41 NVVELNLMCT-PIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEI 106 (369)
Q Consensus 41 ~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~ 106 (369)
.|++|+++++ .+. .+...+...++|++|++++|..... +...+...++|++|++++|..... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4555555444 443 1223344445555555555543321 223333445555555555543322 2333
Q ss_pred hhccCccceecc--cccccccc----cchhhhcccCCCeEeecCC
Q 017559 107 LEKMELLEEINL--EEASNIKE----LPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 107 ~~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~ 145 (369)
+...+.|++|++ ++|..... +...+...++|++|++++|
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 444455555555 43332221 2233334455555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=5.6e-06 Score=70.32 Aligned_cols=78 Identities=26% Similarity=0.279 Sum_probs=45.7
Q ss_pred CCCCCcEEEeccCCCcCCC---cccCCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEEcCCCCCC-ccc-------hh
Q 017559 180 DLNKLETLSLFECRGLVLP---PLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLNLSGNNIE-SLP-------TS 246 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~-~~~-------~~ 246 (369)
.+++|++|++++|....++ ..+..+++|+.|++++|.+.++.. .+..+ +|++|++++|.+. .+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 4567777777777754433 344466777777777777766421 12222 6777777777665 232 22
Q ss_pred hccCCCCCEecc
Q 017559 247 ISQLSRLRWLYL 258 (369)
Q Consensus 247 ~~~~~~L~~L~l 258 (369)
+..+|+|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 455666666653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=6.5e-05 Score=63.74 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=15.4
Q ss_pred CCcCcEEecCCCcCcc--cCchhhhccCccceeccccc
Q 017559 86 LKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 86 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~ 121 (369)
+++|+.|++++|.... .++..+..+++|+.|++++|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 4444444444443322 22233444444444444433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.0021 Score=51.55 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred CeeEEEcCCc-ccc-----ccCcccCCCCCCCEEeCcCccccc----ccchhhccCCcCcEEecCCCcCccc----Cchh
Q 017559 41 NVVELNLMCT-PIE-----EVPLSIECLPNLETLEMSFCNSLK----RLSTSICKLKSLRSLDLSYCINLES----FPEI 106 (369)
Q Consensus 41 ~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~ 106 (369)
.|+.|+++++ .+. .+-+.+..-+.|+.|+|++|.... .+...+..-..|+.|+|++|.+... +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5666666553 443 233345555667777777665443 2233444556677777776654432 2234
Q ss_pred hhccCccceeccccccc--cc-----ccchhhhcccCCCeEeecC
Q 017559 107 LEKMELLEEINLEEASN--IK-----ELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 107 ~~~l~~L~~L~l~~~~~--~~-----~~~~~~~~~~~L~~L~l~~ 144 (369)
+..-+.|++|+++++.. ++ .+...+...+.|+.|+++.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 44445566776663321 22 1333455556666666654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0061 Score=45.46 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=34.4
Q ss_pred EEecCCCCCcc--ccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCccc
Q 017559 23 KIDCYKCVNLR--EFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS 75 (369)
Q Consensus 23 ~L~l~~~~~~~--~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~ 75 (369)
.++.+++. ++ .+|..++ ++++|+|++|.++.++. .|..+++|++|+|.+|..
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 56666665 55 7775554 77777777777776665 355666777777776654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.29 E-value=0.00063 Score=54.62 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=15.5
Q ss_pred CCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEcCCC
Q 017559 204 LSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~ 238 (369)
-+.|+.|++++|.+.. +...+..-+.|++|+|+++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3445555555554443 1222333344555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.07 E-value=0.013 Score=43.56 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=30.2
Q ss_pred EEeccCCCCc--cCCCCCCCCCCCCEEEcCCCCCCccch-hhccCCCCCEecccccc
Q 017559 209 KLELGDCEIM--EIPPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYLVNCV 262 (369)
Q Consensus 209 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~ 262 (369)
.++.++..++ .+|..+ .++|++|+|++|.++.++. .+..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 454332 2356677777777666653 34566667777776664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.68 E-value=17 Score=25.04 Aligned_cols=38 Identities=8% Similarity=-0.109 Sum_probs=20.8
Q ss_pred ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCC
Q 017559 58 SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSY 96 (369)
Q Consensus 58 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (369)
.|..|.+|+.+.|-.. ....-...|.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4566666666666542 2222234556666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.66 E-value=29 Score=23.79 Aligned_cols=13 Identities=0% Similarity=0.095 Sum_probs=6.3
Q ss_pred ccCCCCCcEEEec
Q 017559 178 IVDLNKLETLSLF 190 (369)
Q Consensus 178 ~~~~~~L~~L~l~ 190 (369)
|..|++|+++.+-
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 4445555555544
Done!