BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017562
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 41/217 (18%)
Query: 13 WDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFR 72
WD K GVQ L+AK + + Y+ + ++ + N QKTP GL++
Sbjct: 253 WDSKVSGVQVLLAKLTNK----------QAYKDTVQSYVNYLI----NNQQKTPKGLLYI 298
Query: 73 QRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRA 132
W ++ +A+F+ L+ + ++ + FA++Q+DY LGD R
Sbjct: 299 DMWGTLRHAANAAFIM-------------LEAAELGLSASSYRQFAQTQIDYALGDGGR- 344
Query: 133 TSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPN--LLVGAVVG 190
S++ G+G+N P R HHR+SS P+ +C W + DPN +L GA+VG
Sbjct: 345 -SFVCGFGSNPPTRPHHRSSSCP-----PAPATC-----DWNTFNSPDPNYHVLSGALVG 393
Query: 191 GPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNA 227
GPD DN+ D R +Y E AT NA LA L A
Sbjct: 394 GPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVA 430
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 39/216 (18%)
Query: 13 WDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFR 72
WD G L+A+ ++ G Y ER+ G + TP GL +
Sbjct: 280 WDDVTYGTYLLLAR--IKNDNGKYKEAIERH------LDWWTTGYNGERITYTPKGLAWL 331
Query: 73 QRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPRA 132
+W ++++ T+ +FLA VYSD+ K L FA+SQ DY LG R
Sbjct: 332 DQWGSLRYATTTAFLACVYSDWENGDKEKAKT---------YLEFARSQADYALGSTGR- 381
Query: 133 TSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP---NLLVGAVV 189
S++VG+G N P+R HHR + + +W S+ P ++L GA+V
Sbjct: 382 -SFVVGFGENPPKRPHHRTA-----------------HGSWADSQMEPPEHRHVLYGALV 423
Query: 190 GGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 225
GGPD+ DN+ D NY E A NA +G+LA++
Sbjct: 424 GGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKM 459
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 32/164 (19%)
Query: 62 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 121
V TPGGL + W +++ + S + VY C LL AK Q
Sbjct: 291 VTTTPGGLKWLSNWGVLRYAAAESMVMLVY------------CKQN--PDQSLLDLAKKQ 336
Query: 122 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 181
VDYILGDNP SY++GYG+N+ HHRA++ GY T+ + + P
Sbjct: 337 VDYILGDNPANMSYIIGYGSNWCIHPHHRAAN---------------GY-TYANGDNAKP 380
Query: 182 --NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILA 223
+LL GA+VGGPD D F D + Y+ TE A NA ++G+LA
Sbjct: 381 AKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 36/223 (16%)
Query: 11 FGWDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAEYFMCS-CLGKGSRNVQKTPGGL 69
WD K G L+AK GK ++Y A ++ +G + V +PGG+
Sbjct: 258 IAWDDKSYGTYVLLAK--ETGK--------QKYIDDANRWLDYWTVGVNGQRVPYSPGGM 307
Query: 70 IFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDN 129
W +++ + +F+A VY+ + R + FA Q++Y LGDN
Sbjct: 308 AVLDTWGALRYAANTAFVALVYAKVIDDPVRKQRYH----------DFAVRQINYALGDN 357
Query: 130 PRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVV 189
PR +SY+VG+GNN P+ HHR + G + +S + ++L GA+V
Sbjct: 358 PRNSSYVVGFGNNPPRNPHHR--------------TAHGSWTDSIASPAENRHVLYGALV 403
Query: 190 GGP-DAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 231
GGP D + D R +Y E AT NA LA L +GG
Sbjct: 404 GGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGG 446
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 40/222 (18%)
Query: 13 WDVKYPGVQTLVAKFLMQGKAGHYAPVFERYQQKAE-YFMCSCLGKGSRNVQKTPGGLIF 71
WD + G L+AK + GK + Y+Q E + G ++ TP GL +
Sbjct: 281 WDDVHNGAALLLAK--ITGK--------DIYKQIIESHLDYWTTGYNGERIKYTPKGLAW 330
Query: 72 RQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQVDYILGDNPR 131
+W ++++ T+ +FLA VYSD++ + F +SQ+DY LG R
Sbjct: 331 LDQWGSLRYATTTAFLAFVYSDWVGCPSTKKEI---------YRKFGESQIDYALGSAGR 381
Query: 132 ATSYMVGYGNNYPQRVHHRA--SSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVV 189
S++VG+G N P+R HHR SS + PS+ + L GA+V
Sbjct: 382 --SFVVGFGTNPPKRPHHRTAHSSWADSQSIPSY----------------HRHTLYGALV 423
Query: 190 GGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 231
GGP + D++ D NY E A NA +G LA++ +GG
Sbjct: 424 GGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGG 465
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 32/166 (19%)
Query: 62 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 121
+ TPGG +F +W + ++ T+A +A VY + P++ +A+SQ
Sbjct: 377 ITVTPGGYVFLNQWGSARYNTAAQLIALVYDKHHGDT------------PSKYANWARSQ 424
Query: 122 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 181
+DY+LG NP Y+VGY +N + HHRA+S + + S P
Sbjct: 425 MDYLLGKNPLNRCYVVGYSSNSVKYPHHRAASGLK------------------DANDSSP 466
Query: 182 N--LLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 225
+ +L GA+VGGPDA D DR ++Y E A NA +G A L
Sbjct: 467 HKYVLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGACAGL 512
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 58 GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGF 117
G+R V TP GL + +W +++ T+ +FLA VY+++ C+ V+ + F
Sbjct: 295 GTR-VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEG-------CTPSKVSVYK--DF 344
Query: 118 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSK 177
KSQ+DY LG R S++VGYG N PQ HHR + G + +S
Sbjct: 345 LKSQIDYALGSTGR--SFVVGYGVNPPQHPHHR--------------TAHGSWTDQMTSP 388
Query: 178 GSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 231
+ + GA+VGGPD D + D +NY E A NA G LA++ GG
Sbjct: 389 TYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 442
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 58 GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGF 117
G+R V TP GL + +W +++ T+ +FLA VY+++ C+ V+ + F
Sbjct: 295 GTR-VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEG-------CTPSKVSVYK--DF 344
Query: 118 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSK 177
KSQ+DY LG R S++VGYG N PQ HHR + G + +S
Sbjct: 345 LKSQIDYALGSTGR--SFVVGYGVNPPQHPHHR--------------TAHGSWTDQMTSP 388
Query: 178 GSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 231
+ + GA+VGGPD D + D +NY E A NA G LA++ GG
Sbjct: 389 TYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 442
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 118 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSK 177
A+ DY+ G NP Y+ G+G + HHR S + +P GG +
Sbjct: 431 AQRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVADDVD-HPVPGMVVGGPNRHLQDE 489
Query: 178 GSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHG 230
+ A + G A + + D +D+Y E A Y N+P + ++A L G
Sbjct: 490 ------IARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIAALLEARG 536
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 88 ATVYSDYLASAGRDLKCSAGNVAP-AELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQR 146
ATV + AG L C A AP A+L+ + ++ + T+ VGYG+ YP
Sbjct: 32 ATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSV------ETATTVGYGDLYPVT 85
Query: 147 VHHRASSIVSIKVN-PSFVSCRGGYATWFSSKGSD 180
+ R ++V + SF ATWF + +
Sbjct: 86 LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 122 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 181
+ Y+LG N SY+ GYG Q H R + + K P+ G + +S+ DP
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPA--PPPGIISGGPNSRFEDP 561
Query: 182 NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLN 226
+ P F D D++ E NAP + A L+
Sbjct: 562 TINAAVKKDTP-PQKCFIDHTDSWSTNEITVNWNAPFAWVTAYLD 605
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 185 VGAVVGGPDAYDNFGDRRDNYEQTEPA---------TYNNAPILGILARLNAGHGGYNQL 235
+G +GG ++ FG RRD E+ +PA T+NN IL ++AGH Q+
Sbjct: 298 LGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNN----NILT-MSAGHAALTQI 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,838,683
Number of Sequences: 62578
Number of extensions: 435936
Number of successful extensions: 892
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 14
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)