BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017563
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
           From Bacillus Subtilis
          Length = 315

 Score = 33.1 bits (74), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 206 IDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLI 244
           ++ M++++R YF  DD    H Q G R+SS  A + SL+
Sbjct: 182 LEEMKKTVRAYFMVDD--LAHLQRGGRLSSAQAFIGSLL 218


>pdb|3V4P|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
           Act-1
 pdb|3V4P|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
           Act-1
 pdb|3V4V|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
           Act-1 And Ro0505376
 pdb|3V4V|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
           Act-1 And Ro0505376
          Length = 503

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 71  QSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQYEGSNGKPGLISFYNRP 130
           +S +  +SED S  V++  +A   LS    L+  S      I YE     P       R 
Sbjct: 346 KSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGP-----EKRE 400

Query: 131 YKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLIL 188
            K ED  + + V+ +++   W+     L A+   P  +L ++ ++ F + L+ +   L
Sbjct: 401 GKAEDRGQCNHVRINQTVTFWV----SLQATHCLPEPHLLRLRALGFSEELIVELHTL 454


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,998,256
Number of Sequences: 62578
Number of extensions: 325020
Number of successful extensions: 747
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 2
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)