Query 017563
Match_columns 369
No_of_seqs 39 out of 41
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 09:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15348 GEMIN8: Gemini of Caj 38.5 20 0.00043 34.2 1.9 24 272-295 184-207 (209)
2 PF06570 DUF1129: Protein of u 32.0 1.6E+02 0.0035 27.1 6.6 90 117-212 43-137 (206)
3 PF04987 PigN: Phosphatidylino 23.1 2.6E+02 0.0056 28.8 6.9 51 156-208 256-311 (442)
4 PF10361 DUF2434: Protein of u 23.0 5.5E+02 0.012 26.3 8.9 90 193-287 55-148 (296)
5 KOG1963 WD40 repeat protein [G 22.2 93 0.002 35.3 3.7 56 75-133 321-378 (792)
6 PF15470 DUF4637: Domain of un 21.9 78 0.0017 29.6 2.6 53 113-166 56-109 (173)
7 PRK07668 hypothetical protein; 20.5 8.4E+02 0.018 24.1 10.2 16 260-275 201-216 (254)
8 KOG0254 Predicted transporter 20.0 9.3E+02 0.02 24.4 10.5 44 167-212 316-359 (513)
9 PF10003 DUF2244: Integral mem 19.5 94 0.002 27.2 2.6 34 229-263 10-45 (140)
10 PF02040 ArsB: Arsenical pump 18.0 1.1E+03 0.024 24.6 12.7 151 159-316 147-304 (423)
No 1
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=38.47 E-value=20 Score=34.16 Aligned_cols=24 Identities=29% Similarity=0.778 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhcCCCccceeee
Q 017563 272 IVVQFAFEQYARYRKSPSWPVIPI 295 (369)
Q Consensus 272 L~VQ~afE~lt~~~kSpvWpvVPi 295 (369)
-.+|+.|++..+..+..-||+||.
T Consensus 184 aalql~fd~~~D~~~P~~WP~IPL 207 (209)
T PF15348_consen 184 AALQLSFDKHCDRKQPKYWPVIPL 207 (209)
T ss_pred HHHHHHHHhhhcccCCCCCCCCCC
Confidence 468999999999999999999996
No 2
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.01 E-value=1.6e+02 Score=27.05 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=44.8
Q ss_pred CCCCcceEeeecCCCCccccccccccccCC---CceEEeehhHHHHhhhccchhhHHHHHHHHhcc--hhHHHHHHHHHh
Q 017563 117 SNGKPGLISFYNRPYKREDEIRISTVQNSR---SSIVWLVGPAVLVASFIFPSLYLRKIISMVFED--SLLTDFLILFFT 191 (369)
Q Consensus 117 ~~GKpG~VSF~~~~~~~~~~~~~~~~~~~~---~s~lWLlGP~vLvAS~i~P~l~L~~visaif~d--~~lt~~L~Lf~~ 191 (369)
.+||+ .=.++|.|....+|..-+...+++ +...|...---.+..+.+.++.-. +-..|.+ .+..++++++..
T Consensus 43 k~G~t-A~~lfG~P~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~g--i~~~f~~~~~~~~gi~tli~~ 119 (206)
T PF06570_consen 43 KKGKT-ARQLFGDPKEYADELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFG--IMGFFSPKNSNQYGIITLILV 119 (206)
T ss_pred hCCCc-HHHHcCCHHHHHHHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHH--HHHHHhhcccccccHHHHHHH
Confidence 46777 456677666666665544432222 224555544443333334333333 3344444 333355555443
Q ss_pred hHHHHHHHHHHHHHHHhhhcc
Q 017563 192 EALFYCGVAVFLLLIDRMRRS 212 (369)
Q Consensus 192 ealFy~GatlFLlmaD~~~Rp 212 (369)
=+ +|-.+|..+.+...|.
T Consensus 120 ~i---~~G~~~~~~~~~i~~~ 137 (206)
T PF06570_consen 120 SI---VGGLVFYFIFKYIYPY 137 (206)
T ss_pred HH---HHHHHHHHHHHHHhcc
Confidence 22 2335566778887775
No 3
>PF04987 PigN: Phosphatidylinositolglycan class N (PIG-N); InterPro: IPR017852 This entry represents the C-terminal region of GPI ethanolamine phosphate transferase 1 enzymes, including the yeast enzyme MCD4 and the mammalian homolgoue PIG-N (also known as phosphatidylinositolglycan class N) [, ]. These enzymes are multi-pass endoplasmic reticulum membrane proteins involved in glycosylphosphatidylinositol (GPI)-anchor biosynthesis. These enzymes transfer ethanolamine phosphate to the first alpha-1,4-linked mannose of the GPI precursor of the GPI-anchor. Ethanolamine phosphate on the alpha-1,4-linked mannose is essential for further mannosylation by GPI10 and is necessary for an efficient recognition of GPI lipids and GPI proteins by the GPI transamidase, for the efficient transport of GPI anchored proteins from endoplasmic reticulum to Golgi and for the physiological incorporation of ceramides into GPI anchors by lipid remodeling. MCD4 is also involved in non-mitochondrial ATP movements across the membrane and participates in Golgi and endoplasmic reticulum function, and is required for the incorporation of BGL2 into the cell wall.; GO: 0016740 transferase activity, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane
Probab=23.11 E-value=2.6e+02 Score=28.75 Aligned_cols=51 Identities=31% Similarity=0.411 Sum_probs=35.8
Q ss_pred HHHHhhhccchh-----hHHHHHHHHhcchhHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 017563 156 AVLVASFIFPSL-----YLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDR 208 (369)
Q Consensus 156 ~vLvAS~i~P~l-----~L~~visaif~d~~lt~~L~Lf~~ealFy~GatlFLlmaD~ 208 (369)
+.|+.++++|.+ .-| +..++.+=..+=.+..+.-|.+||...+.=+.+-=+
T Consensus 256 ~~l~~s~~~p~~~~~~~~~R--L~~i~l~~~~~~~LLS~SyE~LF~~~l~~~l~~wl~ 311 (442)
T PF04987_consen 256 IYLVYSFVIPLFSSTSYRQR--LLLIFLNFAPPFILLSISYESLFYQALSMELLLWLR 311 (442)
T ss_pred hccchhheehhcCCCcHHHH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 455566666644 234 667777777788888899999999988776655433
No 4
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=23.00 E-value=5.5e+02 Score=26.26 Aligned_cols=90 Identities=16% Similarity=0.031 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccCCCCcccCCCcchhhhHHHHHHHHHHHHHhhh----hhcCCcccchhHHHHHHH
Q 017563 193 ALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTM----GLVWPWTGPAASATLAPY 268 (369)
Q Consensus 193 alFy~GatlFLlmaD~~~Rp~~~~~~~~~~~~~~p~~gy~~~~v~~~vlg~viPlv~m----Gv~WP~~gp~a~vaL~PY 268 (369)
++|-++..+=|.-..|-+|-+.|. .|++..+ +-+++.+|..++-..+.+--...+ ..++.- |+++.-+.-|
T Consensus 55 v~f~i~lvltLvnL~KHG~~~lp~-eKRf~~i--GRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~--piil~sfF~~ 129 (296)
T PF10361_consen 55 VLFAIALVLTLVNLRKHGRLYLPL-EKRFYPI--GRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGL--PIILQSFFWY 129 (296)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCc-hhccccc--chhHHHHHHHHHHHHHHHhhheeeeecHHhcccc--cHHHHHHHHH
Confidence 333333333333344555554443 2344333 234777888877666655544444 111111 6666666777
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 017563 269 LVGIVVQFAFEQYARYRKS 287 (369)
Q Consensus 269 LvgL~VQ~afE~lt~~~kS 287 (369)
|+..+.=-+.=...+||+|
T Consensus 130 l~~~~~lA~vWE~VRhWGS 148 (296)
T PF10361_consen 130 LMQPGTLAAVWEAVRHWGS 148 (296)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 7665544444334556665
No 5
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=22.23 E-value=93 Score=35.30 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=33.1
Q ss_pred EeecccccccccCCCCCCcccccCCcccccC--CCCCCceeecCCCCCcceEeeecCCCCc
Q 017563 75 LAISEDQSEYVEINPNAPEQLSQHSNLQDIS--SSGSPSIQYEGSNGKPGLISFYNRPYKR 133 (369)
Q Consensus 75 ~~~se~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~GKpG~VSF~~~~~~~ 133 (369)
-+..|.++.+++++++++.... ..++.. ..-+.--...-.+||||.|-||+....+
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~---~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKT---RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred ccchhhhhhccCccCCCccccc---cccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 3467888999999988666411 111111 0011111224478999999999886553
No 6
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=21.94 E-value=78 Score=29.61 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=31.7
Q ss_pred eecCCCC-CcceEeeecCCCCccccccccccccCCCceEEeehhHHHHhhhccch
Q 017563 113 QYEGSNG-KPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPS 166 (369)
Q Consensus 113 ~~~~~~G-KpG~VSF~~~~~~~~~~~~~~~~~~~~~s~lWLlGP~vLvAS~i~P~ 166 (369)
..+..+| ..|+||+|-+...+... -...--+..++|-=-+.|.+|+..+..|.
T Consensus 56 ~a~~~egrergSVSY~PLRQEsStq-qValLRRadsgFWgwlsPfaLl~gl~aPa 109 (173)
T PF15470_consen 56 EAEEGEGRERGSVSYCPLRQESSTQ-QVALLRRADSGFWGWLSPFALLGGLAAPA 109 (173)
T ss_pred cccccccccCCceecccccccchhh-HHHHhhcccCCchhhhcHHHHhccccCcc
Confidence 3456677 78999999765432221 11222333334433468999999888884
No 7
>PRK07668 hypothetical protein; Validated
Probab=20.49 E-value=8.4e+02 Score=24.13 Aligned_cols=16 Identities=6% Similarity=0.110 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 017563 260 AASATLAPYLVGIVVQ 275 (369)
Q Consensus 260 ~a~vaL~PYLvgL~VQ 275 (369)
..++...|.++++..+
T Consensus 201 ~~l~l~~p~~i~~~f~ 216 (254)
T PRK07668 201 GLLYLIIPLSIMFLFK 216 (254)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777777666533
No 8
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=19.96 E-value=9.3e+02 Score=24.43 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcchhHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q 017563 167 LYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRS 212 (369)
Q Consensus 167 l~L~~visaif~d~~lt~~L~Lf~~ealFy~GatlFLlmaD~~~Rp 212 (369)
+|.+.+++..-.++.. ....+.+=++-.+|+.+..+++||.+|.
T Consensus 316 ~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr 359 (513)
T KOG0254|consen 316 YYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRR 359 (513)
T ss_pred eehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4556665555444332 5666777777778888889999998554
No 9
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=19.55 E-value=94 Score=27.20 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=18.8
Q ss_pred cchhh--hHHHHHHHHHHHHHhhhhhcCCcccchhHH
Q 017563 229 LGQRI--SSVAALVLSLIIPMVTMGLVWPWTGPAASA 263 (369)
Q Consensus 229 ~gy~~--~~v~~~vlg~viPlv~mGv~WP~~gp~a~v 263 (369)
.|+++ ..+++..+.+.++...+|. ||-++.+.+-
T Consensus 10 ~g~~~~~~~~~~~~~~~a~~f~~~Ga-W~Vl~F~gle 45 (140)
T PF10003_consen 10 RGFLIFIAILAAVSLIIAIAFLLMGA-WPVLPFAGLE 45 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHH
Confidence 55554 3333444444555555688 8887655433
No 10
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=18.00 E-value=1.1e+03 Score=24.61 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=74.1
Q ss_pred HhhhccchhhHHHHHHHHhcchhHHHHHHHHHhhHHHHHHHHH---HHHHHHhhhccCCCCccCCC-CcccCCCcchhhh
Q 017563 159 VASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAV---FLLLIDRMRRSIRPYFATDD-NRALHPQLGQRIS 234 (369)
Q Consensus 159 vAS~i~P~l~L~~visaif~d~~lt~~L~Lf~~ealFy~Gatl---FLlmaD~~~Rp~~~~~~~~~-~~~~~p~~gy~~~ 234 (369)
.||..+|.-=+-+++.+-.-|-...++...++.=.++=+.++. +++--++..++++....++. ..+. ...-+++.
T Consensus 147 tASl~LpvSNltNLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~~~~~~~~~p~~~i~-d~~~~~~~ 225 (423)
T PF02040_consen 147 TASLLLPVSNLTNLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKRYDLSELPPPKSAIK-DPRLFRLS 225 (423)
T ss_pred hhhccccccCcHHHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhcccCcccccc-chhHHHHH
Confidence 4567777777777776666666677788877777777665553 33344444444443322211 1111 11223332
Q ss_pred HHHHHHHHHHHHHhhhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHH---hhcCCCccceeeeeehhhHHHHHHHHHHH
Q 017563 235 SVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYA---RYRKSPSWPVIPIIFQVYRLHQLNRAAQL 311 (369)
Q Consensus 235 ~v~~~vlg~viPlv~mGv~WP~~gp~a~vaL~PYLvgL~VQ~afE~lt---~~~kSpvWpvVPiIfevYRl~QL~RAaqL 311 (369)
..++.++++-...+-.+.+ |.+.++...-++.+..= .-+... .-.|.-.|.++|.+.-.|=+-+=-+..=+
T Consensus 226 ---~~vl~~ll~~~~~~~~~~i--p~~~va~~~a~ill~~~-~r~~~~~~~~~l~~~pW~il~F~~gLfvvV~~L~~~Gl 299 (423)
T PF02040_consen 226 ---LVVLALLLAGFFVASFLGI--PVSAVAGAGAVILLALA-RRSRKISPKRVLREVPWSILPFVLGLFVVVEGLENTGL 299 (423)
T ss_pred ---HHHHHHHHHHHHhccccCC--cHHHHHHHHHHHHHHHH-HhcccccHHHHHHhCCchHHHHHHHHHHHHHHHhhcCH
Confidence 2233333333333322222 44444443333333221 001100 01256789999999888876655554444
Q ss_pred HHHHh
Q 017563 312 VTALS 316 (369)
Q Consensus 312 v~~L~ 316 (369)
.+.+.
T Consensus 300 ~~~l~ 304 (423)
T PF02040_consen 300 TELLA 304 (423)
T ss_pred HHHHH
Confidence 44443
Done!