Query 017563
Match_columns 369
No_of_seqs 39 out of 41
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l5b_A Activator of apoptosis 15.7 20 0.00069 24.3 -1.0 19 252-270 7-26 (32)
2 1zl8_A LIN-7; heterodimer, alp 8.7 2.1E+02 0.007 21.5 2.4 23 305-330 9-31 (53)
3 1jb0_J Photosystem 1 reaction 7.9 3.2E+02 0.011 19.5 3.0 27 338-364 7-36 (41)
4 3c2q_A Uncharacterized conserv 6.9 1.4E+02 0.0048 29.6 1.0 18 145-163 134-151 (345)
5 1wrg_A LH-1, light-harvesting 6.6 5.3E+02 0.018 19.2 3.8 32 184-215 18-49 (55)
6 4av3_A K(+)-stimulated pyropho 6.4 6.1E+02 0.021 27.3 5.6 59 230-289 333-400 (735)
7 4e8u_A Putative uncharacterize 5.4 1.1E+02 0.0039 27.3 -0.5 10 252-261 9-18 (172)
8 2qq8_A TBC1 domain family memb 5.0 7.8E+02 0.027 22.5 4.9 50 162-211 223-279 (334)
9 1dd1_A SMAD4; B-sheet sandwich 4.7 2.3E+02 0.0078 26.9 1.0 29 286-324 236-264 (268)
10 1hjr_A Holliday junction resol 4.2 7.1E+02 0.024 21.2 3.6 51 299-352 41-91 (158)
No 1
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=15.67 E-value=20 Score=24.29 Aligned_cols=19 Identities=47% Similarity=0.947 Sum_probs=12.7
Q ss_pred hcCCcccchh-HHHHHHHHH
Q 017563 252 LVWPWTGPAA-SATLAPYLV 270 (369)
Q Consensus 252 v~WP~~gp~a-~vaL~PYLv 270 (369)
..|||++-++ .++|+-.|+
T Consensus 7 ~yw~wlcaaa~vaalaawll 26 (32)
T 2l5b_A 7 TYWPWLCAAAQVAALAAWLL 26 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 4689988766 556665554
No 2
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=8.68 E-value=2.1e+02 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhcccccccchhhh
Q 017563 305 LNRAAQLVTALSFTVRGAEATSHNLA 330 (369)
Q Consensus 305 L~RAaqLv~~L~F~~k~~e~t~~~l~ 330 (369)
.+||.+|++.| .|..|..+++|+
T Consensus 9 v~RaiELle~l---q~sgevp~~KL~ 31 (53)
T 1zl8_A 9 VQRILELMEHV---QKTGEVNNAKLA 31 (53)
T ss_dssp HHHHHHHHHHH---GGGSSSTHHHHH
T ss_pred HHHHHHHHHHH---HHcCCCCcHHHH
Confidence 68999999999 577888888865
No 3
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=7.89 E-value=3.2e+02 Score=19.51 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---hhcCCC
Q 017563 338 LLNVLQLLGVICIWSLSSFLM---RYFPPT 364 (369)
Q Consensus 338 ll~vlQ~LgviciWSlssFLm---r~~ps~ 364 (369)
-+++-=+++++|+...+.++. ||||-+
T Consensus 7 yLstAPVla~~w~~~tAg~lIEiNRffPD~ 36 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCccc
Confidence 344556789999999988875 888865
No 4
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=6.90 E-value=1.4e+02 Score=29.56 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.5
Q ss_pred CCCceEEeehhHHHHhhhc
Q 017563 145 SRSSIVWLVGPAVLVASFI 163 (369)
Q Consensus 145 ~~~s~lWLlGP~vLvAS~i 163 (369)
+.|.++|.+||++. =+.-
T Consensus 134 ~gG~Iv~V~GPAvv-htga 151 (345)
T 3c2q_A 134 GTGGIAIVGGPAII-HTGG 151 (345)
T ss_dssp SSCCEEEEECTHHH-HTTC
T ss_pred CCCeEEEEecCeEe-cCCc
Confidence 58999999999987 4443
No 5
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=6.61 E-value=5.3e+02 Score=19.20 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=26.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhccCCC
Q 017563 184 DFLILFFTEALFYCGVAVFLLLIDRMRRSIRP 215 (369)
Q Consensus 184 ~~L~Lf~~ealFy~GatlFLlmaD~~~Rp~~~ 215 (369)
+|=..|..-..+|++++++-.+.-+.|||-.+
T Consensus 18 EfH~~f~~~~~~F~~iAvvAH~L~~~wrPWl~ 49 (55)
T 1wrg_A 18 EFHKIFTSSILVFFGVAAFAHLLVWIWRPWVP 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45566777778999999999999999999653
No 6
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=6.41 E-value=6.1e+02 Score=27.32 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=36.1
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhc-------CC--cccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017563 230 GQRISSVAALVLSLIIPMVTMGLV-------WP--WTGPAASATLAPYLVGIVVQFAFEQYARYRKSPS 289 (369)
Q Consensus 230 gy~~~~v~~~vlg~viPlv~mGv~-------WP--~~gp~a~vaL~PYLvgL~VQ~afE~lt~~~kSpv 289 (369)
++....+.+.++.+++....++-. |. |.... ..++.=-++++..+..+|.||.+...||
T Consensus 333 ~~~~s~~~s~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~f-~~~~iGlv~g~lI~~iTEYYTs~~~~PV 400 (735)
T 4av3_A 333 SLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGAISPW-FSAIIGIFSGILIGFWAEYYTSYRYKPT 400 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSHHHHTCTTGGGHHH-HHHHHHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred hHHhhHHHHHHHHHHHHHHHhhhhhhcccccccccchHHH-HHHHHHHHHHHHHHHheeeecCCCCchH
Confidence 666677777777666665554221 11 21222 2333446778888999999998776663
No 7
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=5.35 E-value=1.1e+02 Score=27.27 Aligned_cols=10 Identities=50% Similarity=1.252 Sum_probs=7.0
Q ss_pred hcCCcccchh
Q 017563 252 LVWPWTGPAA 261 (369)
Q Consensus 252 v~WP~~gp~a 261 (369)
++|||+|..+
T Consensus 9 ~VWPwmgIl~ 18 (172)
T 4e8u_A 9 LVYPWKGIVV 18 (172)
T ss_dssp EEESCEEEEE
T ss_pred EECCCEEEEE
Confidence 4788887654
No 8
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=5.01 E-value=7.8e+02 Score=22.51 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=32.4
Q ss_pred hccchhhHHHHHHHHhcchh-------HHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Q 017563 162 FIFPSLYLRKIISMVFEDSL-------LTDFLILFFTEALFYCGVAVFLLLIDRMRR 211 (369)
Q Consensus 162 ~i~P~l~L~~visaif~d~~-------lt~~L~Lf~~ealFy~GatlFLlmaD~~~R 211 (369)
.+-|.+|.-+-+-..|.++. +-|.+..-+.+.+|+++++++...-|..-.
T Consensus 223 ~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~ 279 (334)
T 2qq8_A 223 NLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTK 279 (334)
T ss_dssp TCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHT
T ss_pred CCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 34455555444444555443 456666667889999999998877776543
No 9
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=4.65 E-value=2.3e+02 Score=26.90 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=22.8
Q ss_pred CCCccceeeeeehhhHHHHHHHHHHHHHHHhhhcccccc
Q 017563 286 KSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEA 324 (369)
Q Consensus 286 kSpvWpvVPiIfevYRl~QL~RAaqLv~~L~F~~k~~e~ 324 (369)
.-|||.-| +|++++|+++..+-+|-..+-
T Consensus 236 stPCWIEI----------~L~~pLq~LD~vl~~m~~~~~ 264 (268)
T 1dd1_A 236 ETPCWIEI----------HLHRALQLLDEVLHTMPIADP 264 (268)
T ss_dssp GSSSEEEE----------EEHHHHHHHHHHHHHSCC---
T ss_pred cCCeEEEE----------EcCHHHHHHHHHHHhCCCCCC
Confidence 46999886 689999999999999877653
No 10
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=4.15 E-value=7.1e+02 Score=21.15 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 017563 299 VYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWS 352 (369)
Q Consensus 299 vYRl~QL~RAaqLv~~L~F~~k~~e~t~~~l~i~~sL~~ll~vlQ~LgviciWS 352 (369)
..||.++++++. .++=.-+-.++..|.+-.+..-.+.+.+-|.-|++.++-
T Consensus 41 ~~Rl~~i~~~l~---~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~ 91 (158)
T 1hjr_A 41 PSRLKLIYAGVT---EIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAA 91 (158)
T ss_dssp HHHHHHHHHHHH---HHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHH
Confidence 579999998863 344444555566666666655677899999999988773
Done!