BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017564
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 129 ALVETHQ--GFVIDLETQLSYFKIVEKL--LKQKLGDEEAETLLSEAVYLFGVGGN---D 181
A+V HQ G +D+E ++S I+ + LK LGD+ TL A L G+G D
Sbjct: 119 AMVRRHQLDGLDLDVEEEMSLPGIIRLIDRLKLDLGDDFIITLAPVAAALLGIGNLSGFD 178
Query: 182 YFNLFTSNSSDLHFSKKEF 200
Y L S + + +F
Sbjct: 179 YRQLEQQRGSKISWYNAQF 197
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 105 PTFLPYHNHDQF-----TYGVNFASGGAGALVETHQGFVIDLETQLSYFKIVEKLLKQKL 159
PT LPY+ +F +G +G G +VE L + + K+ K+LK
Sbjct: 32 PTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVE---ATAFGLGKEDAVLKVAVKMLKSTA 88
Query: 160 GDEEAETLLSEAVYLFGVGGND 181
+E E L+SE + +G ++
Sbjct: 89 HADEKEALMSELKIMSHLGQHE 110
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 105 PTFLPYHNHDQF-----TYGVNFASGGAGALVETHQGFVIDLETQLSYFKIVEKLLKQKL 159
PT LPY+ +F +G +G G +VE L + + K+ K+LK
Sbjct: 32 PTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVE---ATAFGLGKEDAVLKVAVKMLKSTA 88
Query: 160 GDEEAETLLSEAVYLFGVGGND 181
+E E L+SE + +G ++
Sbjct: 89 HADEKEALMSELKIMSHLGQHE 110
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 105 PTFLPYHNHDQF-----TYGVNFASGGAGALVETHQGFVIDLETQLSYFKIVEKLLKQKL 159
PT LPY+ +F +G +G G +VE L + + K+ K+LK
Sbjct: 32 PTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVE---ATAFGLGKEDAVLKVAVKMLKSTA 88
Query: 160 GDEEAETLLSEAVYLFGVGGND 181
+E E L+SE + +G ++
Sbjct: 89 HADEKEALMSELKIMSHLGQHE 110
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 105 PTFLPYHNHDQF-----TYGVNFASGGAGALVETHQGFVIDLETQLSYFKIVEKLLKQKL 159
PT LPY+ +F +G +G G +VE L + + K+ K+LK
Sbjct: 24 PTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVE---ATAFGLGKEDAVLKVAVKMLKSTA 80
Query: 160 GDEEAETLLSEAVYLFGVGGND 181
+E E L+SE + +G ++
Sbjct: 81 HADEKEALMSELKIMSHLGQHE 102
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 105 PTFLPYHNHDQF-----TYGVNFASGGAGALVETHQGFVIDLETQLSYFKIVEKLLKQKL 159
PT LPY+ +F +G +G G +VE L + + K+ K+LK
Sbjct: 32 PTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVE---ATAFGLGKEDAVLKVAVKMLKSTA 88
Query: 160 GDEEAETLLSEAVYLFGVGGND 181
+E E L+SE + +G ++
Sbjct: 89 HADEKEALMSELKIMSHLGQHE 110
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 105 PTFLPYHNHDQFTYGVNFASG---GAGALVETHQGFVIDLETQLSYFKIVEKLLKQKLGD 161
PT LPY+ +F N G GAGA + + L + + K+ K+LK
Sbjct: 17 PTQLPYNEKWEFPRN-NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHA 75
Query: 162 EEAETLLSEAVYLFGVGGND 181
+E E L+SE + +G ++
Sbjct: 76 DEKEALMSELKIMSHLGQHE 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,253,517
Number of Sequences: 62578
Number of extensions: 481172
Number of successful extensions: 790
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 7
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)