Query 017566
Match_columns 369
No_of_seqs 267 out of 1480
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 7.4E-35 2.5E-39 249.6 10.0 121 39-159 7-127 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 5.9E-34 2E-38 235.8 10.6 103 57-159 2-104 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.8E-34 2E-38 237.2 10.1 103 59-161 1-103 (107)
4 3osg_A MYB21; transcription-DN 100.0 7.7E-33 2.6E-37 236.8 11.2 109 53-162 5-113 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 2.6E-33 8.9E-38 241.1 7.6 105 58-162 1-105 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.2E-32 4.2E-37 243.8 8.3 121 39-159 38-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.6E-29 5.6E-34 223.8 5.1 103 57-159 4-107 (159)
8 2dim_A Cell division cycle 5-l 99.8 8.4E-22 2.9E-26 152.0 4.7 67 53-119 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 5.1E-21 1.7E-25 163.6 5.3 75 85-159 1-76 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 6.8E-19 2.3E-23 164.0 7.7 107 54-160 3-201 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 2.3E-18 8E-23 134.1 4.5 59 96-155 8-66 (73)
12 2juh_A Telomere binding protei 99.7 2.6E-18 8.9E-23 145.8 4.5 84 52-135 10-103 (121)
13 2roh_A RTBP1, telomere binding 99.7 1.4E-17 4.6E-22 141.6 6.6 80 53-132 25-114 (122)
14 2cu7_A KIAA1915 protein; nucle 99.7 3.1E-17 1.1E-21 127.1 7.0 58 105-162 3-60 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 2.2E-17 7.7E-22 123.3 5.2 57 54-110 3-59 (60)
16 1ity_A TRF1; helix-turn-helix, 99.7 3.1E-17 1.1E-21 126.0 4.5 64 52-115 3-68 (69)
17 1gvd_A MYB proto-oncogene prot 99.7 3.3E-17 1.1E-21 119.0 4.2 52 57-108 1-52 (52)
18 2din_A Cell division cycle 5-l 99.7 8.5E-17 2.9E-21 122.5 6.2 57 104-161 2-58 (66)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 5E-17 1.7E-21 118.0 3.4 51 58-108 2-52 (52)
20 2d9a_A B-MYB, MYB-related prot 99.6 3E-16 1E-20 117.2 5.4 54 106-159 3-57 (60)
21 3sjm_A Telomeric repeat-bindin 99.6 1.4E-16 4.9E-21 121.0 3.2 55 56-110 8-64 (64)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 8.5E-16 2.9E-20 111.5 6.1 50 109-158 1-51 (52)
23 1x41_A Transcriptional adaptor 99.6 4.8E-16 1.7E-20 116.3 4.5 55 54-108 3-57 (60)
24 1w0t_A Telomeric repeat bindin 99.6 1.8E-15 6.3E-20 110.3 6.4 50 110-159 1-53 (53)
25 1gvd_A MYB proto-oncogene prot 99.6 1.7E-15 5.6E-20 110.0 5.7 49 109-157 1-50 (52)
26 1x41_A Transcriptional adaptor 99.6 2.7E-15 9.1E-20 112.3 6.2 53 106-158 3-56 (60)
27 1ity_A TRF1; helix-turn-helix, 99.6 3.6E-15 1.2E-19 114.4 6.9 59 104-162 3-64 (69)
28 2din_A Cell division cycle 5-l 99.6 6E-16 2.1E-20 117.7 1.9 60 52-113 2-61 (66)
29 2dim_A Cell division cycle 5-l 99.6 2.7E-15 9.2E-20 115.4 5.3 55 106-160 4-59 (70)
30 2elk_A SPCC24B10.08C protein; 99.6 2.1E-15 7.1E-20 112.2 4.4 51 55-105 5-56 (58)
31 1w0t_A Telomeric repeat bindin 99.5 1.8E-15 6.2E-20 110.3 3.4 49 58-106 1-51 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.5 4.9E-15 1.7E-19 115.3 5.2 55 106-160 3-63 (75)
33 2yum_A ZZZ3 protein, zinc fing 99.5 2.9E-15 9.8E-20 116.7 3.0 60 54-113 3-67 (75)
34 3zqc_A MYB3; transcription-DNA 99.5 3.4E-15 1.2E-19 128.0 3.4 123 7-140 8-130 (131)
35 3sjm_A Telomeric repeat-bindin 99.5 1.8E-14 6E-19 109.4 6.7 51 109-159 9-62 (64)
36 2ltp_A Nuclear receptor corepr 99.3 1.2E-15 4.1E-20 123.0 0.0 58 104-161 9-66 (89)
37 2elk_A SPCC24B10.08C protein; 99.5 1.9E-14 6.4E-19 107.1 6.4 50 107-156 5-56 (58)
38 2cu7_A KIAA1915 protein; nucle 99.5 7.2E-15 2.5E-19 113.7 2.9 62 53-116 3-64 (72)
39 2aje_A Telomere repeat-binding 99.4 4.2E-14 1.4E-18 117.3 4.8 80 52-131 6-95 (105)
40 2llk_A Cyclin-D-binding MYB-li 99.4 5.1E-14 1.7E-18 109.6 4.7 62 46-110 10-71 (73)
41 2ckx_A NGTRF1, telomere bindin 99.4 9.4E-14 3.2E-18 110.6 6.0 69 60-128 1-79 (83)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.6E-13 8.9E-18 105.6 5.8 51 107-157 14-68 (73)
43 2yus_A SWI/SNF-related matrix- 99.4 3.8E-13 1.3E-17 106.2 6.3 50 54-104 13-62 (79)
44 1gv2_A C-MYB, MYB proto-oncoge 99.4 9.1E-14 3.1E-18 114.4 2.2 68 39-107 36-103 (105)
45 2yus_A SWI/SNF-related matrix- 99.4 4.1E-13 1.4E-17 106.0 4.5 48 108-155 15-62 (79)
46 2k9n_A MYB24; R2R3 domain, DNA 99.3 9.2E-14 3.2E-18 115.1 -0.0 68 39-107 33-100 (107)
47 1x58_A Hypothetical protein 49 99.3 1.7E-12 5.8E-17 97.5 6.1 51 109-159 6-59 (62)
48 3osg_A MYB21; transcription-DN 99.3 2.4E-13 8.1E-18 115.8 0.9 67 39-106 42-108 (126)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.7E-13 1.6E-17 104.1 2.2 53 54-106 13-68 (73)
50 2ckx_A NGTRF1, telomere bindin 99.3 3.5E-12 1.2E-16 101.5 6.7 50 112-161 1-55 (83)
51 2ltp_A Nuclear receptor corepr 98.9 5.6E-13 1.9E-17 107.4 0.0 55 51-106 8-62 (89)
52 2aje_A Telomere repeat-binding 99.2 8.4E-12 2.9E-16 103.4 7.0 54 107-160 9-67 (105)
53 2juh_A Telomere binding protei 99.2 6.7E-12 2.3E-16 106.4 6.4 56 104-159 10-70 (121)
54 1ign_A Protein (RAP1); RAP1,ye 99.2 3.4E-12 1.2E-16 119.1 4.8 55 107-161 4-64 (246)
55 2cjj_A Radialis; plant develop 99.2 1.7E-11 5.7E-16 99.6 6.4 50 110-159 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.2 3.2E-11 1.1E-15 102.4 6.8 54 107-160 27-85 (122)
57 2cjj_A Radialis; plant develop 99.1 2.5E-11 8.6E-16 98.6 2.2 47 59-105 8-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 2.1E-10 7.1E-15 86.0 5.7 47 110-156 11-57 (61)
59 2iw5_B Protein corest, REST co 99.0 6.4E-10 2.2E-14 102.9 6.7 80 81-161 104-183 (235)
60 3hm5_A DNA methyltransferase 1 98.9 1.3E-09 4.6E-14 88.2 6.2 64 94-161 17-85 (93)
61 2xag_B REST corepressor 1; ami 98.9 8.3E-10 2.8E-14 112.5 5.1 50 112-161 381-430 (482)
62 2eqr_A N-COR1, N-COR, nuclear 98.9 1.3E-09 4.4E-14 81.6 4.9 47 57-104 10-56 (61)
63 1x58_A Hypothetical protein 49 98.9 1.3E-09 4.5E-14 81.8 3.6 50 56-106 5-57 (62)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.9 3.1E-09 1.1E-13 82.3 5.9 50 108-158 5-58 (72)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 4.9E-09 1.7E-13 81.2 3.0 49 57-106 6-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 2.5E-08 8.4E-13 77.4 4.9 48 111-158 8-59 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.6 4E-08 1.4E-12 76.2 4.0 47 60-106 9-58 (73)
68 1fex_A TRF2-interacting telome 98.5 1.2E-07 4.2E-12 70.5 5.0 47 111-157 2-58 (59)
69 2iw5_B Protein corest, REST co 98.5 1.1E-07 3.8E-12 88.1 4.8 48 57-105 131-178 (235)
70 1fex_A TRF2-interacting telome 98.4 7.9E-08 2.7E-12 71.6 2.2 48 59-106 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.4 8E-07 2.7E-11 86.1 8.3 99 60-158 111-275 (304)
72 2yqk_A Arginine-glutamic acid 98.3 1.1E-06 3.6E-11 66.1 6.6 48 107-154 5-53 (63)
73 1ug2_A 2610100B20RIK gene prod 98.2 1.5E-06 5.1E-11 69.6 5.6 47 111-157 33-82 (95)
74 4eef_G F-HB80.4, designed hema 98.2 1.4E-07 4.8E-12 72.9 -0.4 43 60-102 21-66 (74)
75 2lr8_A CAsp8-associated protei 97.4 4.1E-07 1.4E-11 69.1 0.0 45 112-157 15-62 (70)
76 4eef_G F-HB80.4, designed hema 98.1 7.3E-07 2.5E-11 68.9 0.9 43 111-153 20-66 (74)
77 2yqk_A Arginine-glutamic acid 98.0 4.5E-06 1.5E-10 62.7 4.5 49 54-103 4-53 (63)
78 2crg_A Metastasis associated p 97.9 2E-05 6.9E-10 60.4 6.4 44 111-154 8-52 (70)
79 4a69_C Nuclear receptor corepr 97.8 2.7E-05 9.2E-10 63.0 5.9 44 111-154 43-86 (94)
80 4iej_A DNA methyltransferase 1 97.8 6.3E-05 2.2E-09 60.7 7.2 50 111-160 30-84 (93)
81 2xag_B REST corepressor 1; ami 97.6 4.2E-05 1.4E-09 78.1 4.7 47 57-104 378-424 (482)
82 2crg_A Metastasis associated p 97.6 5E-05 1.7E-09 58.1 4.0 44 58-102 7-51 (70)
83 4a69_C Nuclear receptor corepr 97.5 6.1E-05 2.1E-09 60.9 3.4 43 59-102 43-85 (94)
84 4b4c_A Chromodomain-helicase-D 97.4 0.00062 2.1E-08 61.7 9.7 100 58-157 6-195 (211)
85 3hm5_A DNA methyltransferase 1 97.3 0.0001 3.5E-09 59.6 3.2 45 60-105 31-80 (93)
86 2ebi_A DNA binding protein GT- 97.1 0.00046 1.6E-08 54.3 4.6 48 111-158 4-65 (86)
87 2y9y_A Imitation switch protei 97.1 0.0013 4.4E-08 65.2 8.7 99 60-158 124-291 (374)
88 2ebi_A DNA binding protein GT- 96.9 0.00022 7.5E-09 56.2 0.7 48 58-105 3-63 (86)
89 2lr8_A CAsp8-associated protei 95.6 0.00032 1.1E-08 53.3 0.0 45 60-105 15-61 (70)
90 1ug2_A 2610100B20RIK gene prod 96.6 0.0017 5.8E-08 52.0 3.9 47 58-104 32-80 (95)
91 1irz_A ARR10-B; helix-turn-hel 96.2 0.012 4.1E-07 44.3 6.6 50 109-158 5-59 (64)
92 4iej_A DNA methyltransferase 1 94.8 0.017 5.8E-07 46.5 3.2 45 60-105 31-80 (93)
93 1ofc_X ISWI protein; nuclear p 94.0 0.08 2.7E-06 51.1 6.4 48 111-158 110-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 93.1 0.093 3.2E-06 39.4 4.1 48 56-103 4-55 (64)
95 4b4c_A Chromodomain-helicase-D 92.6 0.15 5.3E-06 45.7 5.6 50 109-158 5-59 (211)
96 2xb0_X Chromo domain-containin 90.4 0.19 6.4E-06 47.8 3.9 27 61-87 170-196 (270)
97 2xb0_X Chromo domain-containin 81.6 2.8 9.6E-05 39.7 6.8 48 111-158 3-55 (270)
98 2o8x_A Probable RNA polymerase 74.9 4.9 0.00017 28.5 5.1 41 117-158 18-58 (70)
99 1ku3_A Sigma factor SIGA; heli 71.5 6.6 0.00023 28.6 5.1 42 116-158 12-57 (73)
100 3r46_A Coiled coil helix L24D; 69.8 2.4 8.1E-05 27.1 1.9 18 332-349 8-25 (35)
101 2li6_A SWI/SNF chromatin-remod 69.1 4 0.00014 33.5 3.7 38 121-158 53-98 (116)
102 2p7v_B Sigma-70, RNA polymeras 67.9 6.8 0.00023 28.1 4.4 41 117-158 8-52 (68)
103 2lm1_A Lysine-specific demethy 65.7 9.5 0.00033 30.5 5.3 39 120-158 47-97 (107)
104 2y9y_A Imitation switch protei 64.0 11 0.00039 37.1 6.4 44 111-154 123-168 (374)
105 2jrz_A Histone demethylase jar 63.1 8.3 0.00028 31.6 4.5 40 120-159 43-94 (117)
106 3hug_A RNA polymerase sigma fa 62.8 11 0.00039 28.6 5.1 41 117-158 40-80 (92)
107 2cxy_A BAF250B subunit, HBAF25 61.4 11 0.00037 31.2 5.0 40 120-159 54-105 (125)
108 2eqy_A RBP2 like, jumonji, at 60.3 11 0.00036 31.2 4.7 40 120-159 45-96 (122)
109 3cz6_A DNA-binding protein RAP 59.2 10 0.00035 33.3 4.6 30 55-87 110-147 (168)
110 1kkx_A Transcription regulator 57.1 8.3 0.00028 32.0 3.5 39 121-159 52-98 (123)
111 1x3u_A Transcriptional regulat 54.0 27 0.00091 25.2 5.6 42 114-158 17-58 (79)
112 1tty_A Sigma-A, RNA polymerase 53.9 20 0.0007 26.9 5.1 41 117-158 21-65 (87)
113 2kk0_A AT-rich interactive dom 52.0 18 0.00061 30.7 4.9 39 120-158 67-118 (145)
114 2li6_A SWI/SNF chromatin-remod 51.2 5.9 0.0002 32.4 1.6 39 69-107 53-98 (116)
115 1c20_A DEAD ringer protein; DN 50.9 21 0.00071 29.5 5.0 41 119-159 54-107 (128)
116 1ig6_A MRF-2, modulator recogn 50.4 10 0.00035 30.3 3.0 39 120-158 36-87 (107)
117 1or7_A Sigma-24, RNA polymeras 50.3 27 0.00091 29.3 5.8 35 123-158 149-183 (194)
118 2jxj_A Histone demethylase jar 49.8 7.6 0.00026 30.4 2.1 38 121-158 40-89 (96)
119 2rq5_A Protein jumonji; develo 47.4 8.3 0.00029 32.0 2.0 56 69-127 46-113 (121)
120 3c57_A Two component transcrip 47.2 30 0.001 26.5 5.2 43 113-158 27-69 (95)
121 1xsv_A Hypothetical UPF0122 pr 46.4 38 0.0013 27.1 5.8 41 117-158 28-68 (113)
122 1je8_A Nitrate/nitrite respons 45.6 31 0.0011 25.7 4.9 43 113-158 21-63 (82)
123 2rq5_A Protein jumonji; develo 45.3 22 0.00076 29.4 4.3 39 120-158 45-96 (121)
124 1fse_A GERE; helix-turn-helix 45.0 35 0.0012 24.1 4.9 44 112-158 10-53 (74)
125 3i4p_A Transcriptional regulat 44.6 20 0.00068 30.2 4.1 45 117-162 3-48 (162)
126 2jpc_A SSRB; DNA binding prote 43.6 43 0.0015 22.8 5.1 39 119-159 3-41 (61)
127 3ulq_B Transcriptional regulat 43.6 43 0.0015 25.6 5.5 46 111-159 27-72 (90)
128 3mzy_A RNA polymerase sigma-H 41.6 35 0.0012 27.4 5.0 31 127-158 121-151 (164)
129 1rp3_A RNA polymerase sigma fa 41.4 41 0.0014 28.9 5.8 41 117-158 190-230 (239)
130 2p1m_A SKP1-like protein 1A; F 40.8 14 0.00047 31.6 2.5 35 83-124 119-153 (160)
131 2yqf_A Ankyrin-1; death domain 40.4 38 0.0013 27.0 5.0 35 115-150 14-48 (111)
132 2q1z_A RPOE, ECF SIGE; ECF sig 39.8 18 0.00061 30.2 3.0 36 122-158 143-178 (184)
133 1k78_A Paired box protein PAX5 38.5 1.5E+02 0.0052 23.8 8.7 78 60-140 31-118 (149)
134 2rnj_A Response regulator prot 38.5 36 0.0012 25.7 4.3 43 113-158 29-71 (91)
135 2o71_A Death domain-containing 37.7 37 0.0013 27.7 4.5 28 121-149 26-53 (115)
136 1ig6_A MRF-2, modulator recogn 37.4 14 0.00048 29.5 1.8 40 68-107 36-87 (107)
137 2of5_A Death domain-containing 37.2 35 0.0012 27.8 4.2 28 121-149 26-53 (114)
138 2jrz_A Histone demethylase jar 37.2 12 0.00042 30.5 1.5 40 68-107 43-93 (117)
139 2of5_H Leucine-rich repeat and 36.7 36 0.0012 27.6 4.2 31 119-150 13-43 (118)
140 2dbb_A Putative HTH-type trans 34.9 68 0.0023 26.2 5.8 45 117-162 9-54 (151)
141 1s7o_A Hypothetical UPF0122 pr 33.2 69 0.0024 25.6 5.4 40 117-157 25-64 (113)
142 2k27_A Paired box protein PAX- 32.7 2E+02 0.0069 23.4 11.2 77 60-140 24-111 (159)
143 2e1c_A Putative HTH-type trans 31.8 53 0.0018 28.0 4.8 45 116-161 26-71 (171)
144 2ast_A S-phase kinase-associat 31.2 23 0.00077 30.1 2.2 35 83-124 120-154 (159)
145 1tc3_C Protein (TC3 transposas 31.0 97 0.0033 19.2 5.3 38 113-152 5-42 (51)
146 1wxp_A THO complex subunit 1; 31.0 52 0.0018 26.2 4.3 31 119-150 18-48 (110)
147 1p4w_A RCSB; solution structur 30.2 80 0.0027 24.6 5.2 45 112-159 33-77 (99)
148 2eqy_A RBP2 like, jumonji, at 29.7 17 0.00058 29.9 1.1 39 68-106 45-94 (122)
149 2jvw_A Uncharacterized protein 29.0 46 0.0016 26.1 3.4 45 67-123 18-69 (88)
150 3v7d_A Suppressor of kinetocho 28.8 22 0.00077 30.7 1.8 41 82-134 126-166 (169)
151 2cyy_A Putative HTH-type trans 28.3 79 0.0027 25.9 5.2 44 117-161 7-51 (151)
152 1ntc_A Protein (nitrogen regul 27.9 89 0.0031 23.7 5.0 35 116-151 50-84 (91)
153 3e7l_A Transcriptional regulat 27.5 79 0.0027 22.3 4.3 29 117-146 19-47 (63)
154 3t72_q RNA polymerase sigma fa 23.4 1.3E+02 0.0045 23.5 5.3 40 118-158 23-66 (99)
155 3i4p_A Transcriptional regulat 23.3 25 0.00087 29.6 1.1 40 65-105 3-42 (162)
156 2cg4_A Regulatory protein ASNC 22.1 1.2E+02 0.0042 24.7 5.1 45 117-162 8-53 (152)
157 3cz6_A DNA-binding protein RAP 21.9 47 0.0016 29.1 2.5 26 98-123 100-126 (168)
158 2p5v_A Transcriptional regulat 21.6 1.2E+02 0.0041 25.1 5.0 45 117-162 10-55 (162)
159 2kk0_A AT-rich interactive dom 21.5 61 0.0021 27.3 3.1 57 68-124 67-137 (145)
160 3clo_A Transcriptional regulat 21.5 1.1E+02 0.0039 27.3 5.2 42 114-158 198-239 (258)
161 1fad_A Protein (FADD protein); 21.4 56 0.0019 25.2 2.7 30 120-150 15-44 (99)
162 2lfw_A PHYR sigma-like domain; 20.3 60 0.0021 26.7 2.8 42 116-158 95-136 (157)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=7.4e-35 Score=249.60 Aligned_cols=121 Identities=50% Similarity=0.879 Sum_probs=103.5
Q ss_pred CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHH
Q 017566 39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118 (369)
Q Consensus 39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EE 118 (369)
|+...+|..+|...+.+..++|+||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|.+++++||+||
T Consensus 7 ~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE 86 (128)
T 1h8a_C 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86 (128)
T ss_dssp ---------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHH
Confidence 55666888999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
|++|+++|.+||++|+.||++|||||+++|++||+.+++++
T Consensus 87 d~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998875
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=5.9e-34 Score=235.83 Aligned_cols=103 Identities=57% Similarity=1.096 Sum_probs=98.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHH
Q 017566 57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVI 136 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~I 136 (369)
.++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 57899999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhh
Q 017566 137 SRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 137 A~~l~gRT~~qck~Rw~~~l~rk 159 (369)
|++|||||+++|++||+.+++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999876
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5.8e-34 Score=237.23 Aligned_cols=103 Identities=36% Similarity=0.702 Sum_probs=99.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHh
Q 017566 59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISR 138 (369)
Q Consensus 59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~ 138 (369)
||+||+|||++|+++|.+||..+|..||..|||||++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhhh
Q 017566 139 LLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 139 ~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
+|+|||+++|++||+.++++...
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999998887643
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=7.7e-33 Score=236.85 Aligned_cols=109 Identities=35% Similarity=0.746 Sum_probs=102.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCc
Q 017566 53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNK 132 (369)
Q Consensus 53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~ 132 (369)
..+..++|+||+|||++|+++|.+||. +|..||+.|+||+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 356678899999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 133 WAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 133 W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
|+.||++|+|||+++|++||+.++++....
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988876443
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=2.6e-33 Score=241.14 Aligned_cols=105 Identities=46% Similarity=0.839 Sum_probs=101.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHH
Q 017566 58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVIS 137 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA 137 (369)
.||+||+|||++|+++|.+||..+|..||..|||||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 47999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 138 RLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 138 ~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
++|+|||+++|++||+.+|++++..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999887544
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.2e-32 Score=243.80 Aligned_cols=121 Identities=50% Similarity=0.921 Sum_probs=112.7
Q ss_pred CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHH
Q 017566 39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEE 118 (369)
Q Consensus 39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EE 118 (369)
|+...+|..+|...+.+..++|+||+|||++|+++|.+||..+|..||+.|||||+.||+.||.++|+|.+++++||+||
T Consensus 38 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE 117 (159)
T 1h89_C 38 NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117 (159)
T ss_dssp -----CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHH
T ss_pred CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHH
Confidence 56666888999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
|.+|+++|.+||++|+.||++|||||+++|++||+.+++++
T Consensus 118 d~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998876
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.6e-29 Score=223.76 Aligned_cols=103 Identities=31% Similarity=0.660 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCC-cHHH
Q 017566 57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGN-KWAV 135 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~ 135 (369)
..+++||+|||++|.++|.+||..+|..||+.||||+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 567899999999999999999988999999999999999999999999999999999999999999999999996 6999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 136 ISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 136 IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
||.+|+|||+.||++||+++|...
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHcCCCCHHHHHHHHHHHhCcc
Confidence 999999999999999999988654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.4e-22 Score=151.97 Aligned_cols=67 Identities=34% Similarity=0.704 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCChHHH
Q 017566 53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEED 119 (369)
Q Consensus 53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED 119 (369)
.++..++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||+++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4567888999999999999999999988999999999999999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=5.1e-21 Score=163.57 Aligned_cols=75 Identities=28% Similarity=0.633 Sum_probs=51.2
Q ss_pred HHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 85 IARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 85 IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
||+.|||||+.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|...
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 79999999999999999999999999999999999999999999996 5999999999999999999999988653
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=6.8e-19 Score=164.00 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=93.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHHhhccCCCccccccccccccCcccc------------------
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFGARN-----WSLIARGIAGRSGKSCRLRWCNQLDPAVK------------------ 110 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g~~n-----W~~IA~~lpgRt~~qcr~Rw~~~L~p~~k------------------ 110 (369)
.+...+++||+|||++|+++|.+||..+ |..||+.|||||+.|||.||+.+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 3456788999999999999999998643 99999999999999999999999999986
Q ss_pred -----------CCCCChHHHHHHHHHHHH-h-------------------------------------------------
Q 017566 111 -----------RKPFTDEEDQIIVAAHAV-H------------------------------------------------- 129 (369)
Q Consensus 111 -----------r~~WT~EED~~Ll~lv~~-~------------------------------------------------- 129 (369)
+..||.+||-.|+..+++ |
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 1
Q ss_pred ----CC----cHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566 130 ----GN----KWAVISRLLPGRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 130 ----G~----~W~~IA~~l~gRT~~qck~Rw~~~l~rk~ 160 (369)
|+ .|..||+.+|+||.+++|+||+.+|+...
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~g 201 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYG 201 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHHC
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Confidence 22 69999999999999999999999887763
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=134.15 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=46.7
Q ss_pred ccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566 96 SCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNST 155 (369)
Q Consensus 96 qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~ 155 (369)
...-||.++|+|.+++++||+|||++|+++|.+||++|+.||++| |||++|||+||+.+
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999 99999999999863
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=2.6e-18 Score=145.81 Aligned_cols=84 Identities=20% Similarity=0.355 Sum_probs=78.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc----cCCCccccccccccccC-----ccccCC-CCChHHHHH
Q 017566 52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI----AGRSGKSCRLRWCNQLD-----PAVKRK-PFTDEEDQI 121 (369)
Q Consensus 52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l----pgRt~~qcr~Rw~~~L~-----p~~kr~-~WT~EED~~ 121 (369)
..++.+++++||+|||+.|+++|++||.++|..|++.+ ++||..||++||++++. |.++++ +|+++|+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 34567888999999999999999999988999999985 89999999999999998 999998 999999999
Q ss_pred HHHHHHHhCCcHHH
Q 017566 122 IVAAHAVHGNKWAV 135 (369)
Q Consensus 122 Ll~lv~~~G~~W~~ 135 (369)
|+.++..|||+|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999975
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=1.4e-17 Score=141.61 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc----cCCCcccccccccccc-----CccccCCCCChHH-HHHH
Q 017566 53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI----AGRSGKSCRLRWCNQL-----DPAVKRKPFTDEE-DQII 122 (369)
Q Consensus 53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l----pgRt~~qcr~Rw~~~L-----~p~~kr~~WT~EE-D~~L 122 (369)
.+..+++++||+|||+.|+++|++||.++|..|++.+ ++||..||++||++++ +|.++++.|+++| +.+|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 3556778999999999999999999998999999974 8999999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 017566 123 VAAHAVHGNK 132 (369)
Q Consensus 123 l~lv~~~G~~ 132 (369)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999985
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=3.1e-17 Score=127.08 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=54.9
Q ss_pred cCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 105 LDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 105 L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
++|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.+++++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987544
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.2e-17 Score=123.33 Aligned_cols=57 Identities=30% Similarity=0.651 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcccc
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK 110 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~k 110 (369)
.+..++++||+|||++|+++|.+||..+|..||+.|+|||..||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 467889999999999999999999987999999999999999999999999999875
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=3.1e-17 Score=126.03 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCccccccccccccCccccCCCCC
Q 017566 52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQLDPAVKRKPFT 115 (369)
Q Consensus 52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L~p~~kr~~WT 115 (369)
...+.+++++||+|||++|+++|.+||.++|..||+.|+ |||+.||++||+++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456677889999999999999999999889999999999 9999999999999999999988764
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=3.3e-17 Score=118.99 Aligned_cols=52 Identities=50% Similarity=1.076 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566 57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA 108 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~ 108 (369)
.++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3679999999999999999999878999999999999999999999999984
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.5e-17 Score=122.46 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=54.1
Q ss_pred ccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566 104 QLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
+|+|.+++++||+|||++|+++|++||++|..||+ |+|||+.|||+||+.+|++.+.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 79999999999999999999999999999999999 7899999999999999988744
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=5e-17 Score=117.98 Aligned_cols=51 Identities=33% Similarity=0.714 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566 58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA 108 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~ 108 (369)
++++||+|||++|+++|.+||.++|..||+.|+|||+.||++||.++|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 578999999999999999999879999999999999999999999999984
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3e-16 Score=117.21 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=50.7
Q ss_pred CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 106 DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 106 ~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|+..
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5788999999999999999999999 58999999999999999999999988765
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=1.4e-16 Score=121.01 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCccccccccccccCcccc
Q 017566 56 SRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQLDPAVK 110 (369)
Q Consensus 56 ~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L~p~~k 110 (369)
..++++||+|||++|+++|.+||.++|..||+.++ |||+.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35678999999999999999999889999999876 99999999999999988764
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=8.5e-16 Score=111.45 Aligned_cols=50 Identities=30% Similarity=0.597 Sum_probs=46.0
Q ss_pred ccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 109 VKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 109 ~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|..
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999998863
No 23
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=4.8e-16 Score=116.32 Aligned_cols=55 Identities=18% Similarity=0.410 Sum_probs=51.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcc
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPA 108 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~ 108 (369)
.+...+++||+|||++|+++|.+||..+|..||+.|++||++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4567889999999999999999999889999999999999999999999999764
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=1.8e-15 Score=110.31 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=46.4
Q ss_pred cCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHHHhh
Q 017566 110 KRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLP--GRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 110 kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~--gRT~~qck~Rw~~~l~rk 159 (369)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 68999999999 999999999999998753
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.7e-15 Score=109.99 Aligned_cols=49 Identities=31% Similarity=0.661 Sum_probs=46.3
Q ss_pred ccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566 109 VKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 109 ~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~ 157 (369)
+++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999997 59999999999999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.7e-15 Score=112.28 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=49.5
Q ss_pred CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 106 DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 106 ~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7899999999999999999999998864
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=3.6e-15 Score=114.43 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=53.3
Q ss_pred ccCccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHHHhhhhh
Q 017566 104 QLDPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLP--GRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~--gRT~~qck~Rw~~~l~rk~~~ 162 (369)
...+..++++||+|||++|+++|.+|| ++|+.||.+|+ |||+.||++||+++|+..+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 345677899999999999999999999 68999999999 999999999999999987543
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6e-16 Score=117.74 Aligned_cols=60 Identities=33% Similarity=0.516 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCC
Q 017566 52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKP 113 (369)
Q Consensus 52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~ 113 (369)
.+.|..++++||+|||++|+++|..||. +|..||+ ++|||..||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 4678899999999999999999999996 8999999 8899999999999999999887754
No 29
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=115.41 Aligned_cols=55 Identities=27% Similarity=0.407 Sum_probs=51.3
Q ss_pred CccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566 106 DPAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLPGRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 106 ~p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~ 160 (369)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|...+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 4678999999999999999999999 789999999999999999999999987653
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=2.1e-15 Score=112.22 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCcccccccccccc
Q 017566 55 RSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQL 105 (369)
Q Consensus 55 ~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~Rw~~~L 105 (369)
....+++||+|||++|+++|++||.++|..||+.|+ +||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999889999999999 999999999999875
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=1.8e-15 Score=110.35 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHhhcc--CCCccccccccccccC
Q 017566 58 VKGPWSPEQDAVLSELVSKFGARNWSLIARGIA--GRSGKSCRLRWCNQLD 106 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lp--gRt~~qcr~Rw~~~L~ 106 (369)
++++||+|||++|+++|.+||.++|..||+.|+ |||+.||++||++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999889999999999 9999999999998874
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.9e-15 Score=115.34 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=51.5
Q ss_pred CccccCCCCChHHHHHHHHHHHHhC------CcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566 106 DPAVKRKPFTDEEDQIIVAAHAVHG------NKWAVISRLLPGRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 106 ~p~~kr~~WT~EED~~Ll~lv~~~G------~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~ 160 (369)
+|.+.+++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999 689999999999999999999999998764
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-15 Score=116.66 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHHhhccCCCccccccccccccCccccCCC
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFGA-----RNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKP 113 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g~-----~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~ 113 (369)
.+...+++||+|||++|+++|.+||. .+|..||+.|+|||..||+.||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 56778899999999999999999996 6899999999999999999999999998877664
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.52 E-value=3.4e-15 Score=128.02 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=86.0
Q ss_pred hhHhHhHhhhhhhcCCCceeccCCCCCCCCCCCCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 017566 7 TEIEKWKATVIEVEGGDAVEADADGGADRGRSGDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIA 86 (369)
Q Consensus 7 ~e~e~~ka~~~~ee~~d~~~~d~d~~~~~~~sg~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA 86 (369)
.|++.+...+.. .|..-+..+...- .|+...+|..+|...+.+...+|+||+|||++|+++|.+|| .+|..||
T Consensus 8 eED~~L~~~v~~--~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia 80 (131)
T 3zqc_A 8 AEDDLIREYVKE--NGPQNWPRITSFL----PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIA 80 (131)
T ss_dssp HHHHHHHHHHHH--HCSCCGGGGTTSC----TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHT
T ss_pred HHHHHHHHHHHH--hCcCCHHHHHHHH----CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHH
Confidence 345555554433 2333344443322 35667789999999999999999999999999999999999 5799999
Q ss_pred hhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhC
Q 017566 87 RGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLL 140 (369)
Q Consensus 87 ~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l 140 (369)
+.|||||..||+.||+++|.+.+..++|+.+-- ......+.+|+.|++.|
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKAADVPKKL 130 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC------------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhhhhcchhc
Confidence 999999999999999999999999999987631 11122345688888765
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=1.8e-14 Score=109.45 Aligned_cols=51 Identities=33% Similarity=0.546 Sum_probs=46.1
Q ss_pred ccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhCC--CCCHHHHHHHHHHHHHhh
Q 017566 109 VKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLLP--GRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 109 ~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~--gRT~~qck~Rw~~~l~rk 159 (369)
.++++||+|||++|+++|.+||. +|+.||+.++ |||+.||++||+++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 47899999999999999999995 7999999865 999999999999988764
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=123.04 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=54.4
Q ss_pred ccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566 104 QLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
.++|.+++++||+|||++|+++|.+||++|..||.+|+|||++||++||++++++...
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 5678999999999999999999999999999999999999999999999999988643
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.9e-14 Score=107.06 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=46.5
Q ss_pred ccccCCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCCHHHHHHHHHHHH
Q 017566 107 PAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISRLLP-GRTDNAIKNHWNSTL 156 (369)
Q Consensus 107 p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~~l~-gRT~~qck~Rw~~~l 156 (369)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356689999999999999999999 78999999999 999999999999875
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=7.2e-15 Score=113.73 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccccCCCCCh
Q 017566 53 SGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTD 116 (369)
Q Consensus 53 ~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~ 116 (369)
..+...+++||+|||++|+++|.+||. +|..||++|||||..||+.||.++|.+.++. .+++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~ 64 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDK 64 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 457788999999999999999999996 8999999999999999999999999877665 4443
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=4.2e-14 Score=117.26 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhc----cCCCcccccccccccc-----CccccCCCCChHHHHH-
Q 017566 52 RSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGI----AGRSGKSCRLRWCNQL-----DPAVKRKPFTDEEDQI- 121 (369)
Q Consensus 52 ~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~l----pgRt~~qcr~Rw~~~L-----~p~~kr~~WT~EED~~- 121 (369)
...+.+++++||+|||+.|+++|++||.++|..|++.+ ++||..+|++||++++ +|.++++.-++.|--.
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 34567788999999999999999999998999999965 7999999999999998 7999998888877665
Q ss_pred HHHHHHHhCC
Q 017566 122 IVAAHAVHGN 131 (369)
Q Consensus 122 Ll~lv~~~G~ 131 (369)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=5.1e-14 Score=109.62 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=47.7
Q ss_pred ccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCcccc
Q 017566 46 VGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVK 110 (369)
Q Consensus 46 ~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~k 110 (369)
..+|.+.+.|..++|+||+|||++|+++|.+||. +|..||+.| |||..||+.||+. |....+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 3478899999999999999999999999999995 599999999 9999999999974 544433
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.44 E-value=9.4e-14 Score=110.64 Aligned_cols=69 Identities=23% Similarity=0.399 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhh----ccCCCcccccccccccc-----CccccC-CCCChHHHHHHHHHHHH
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARG----IAGRSGKSCRLRWCNQL-----DPAVKR-KPFTDEEDQIIVAAHAV 128 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~----lpgRt~~qcr~Rw~~~L-----~p~~kr-~~WT~EED~~Ll~lv~~ 128 (369)
++||+|||+.|+++|++||.++|..|++. ++|||..||++||++++ +|.+++ .+..++...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999996 89999999999999987 687766 47778888889998864
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.6e-13 Score=105.61 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=47.2
Q ss_pred ccccCCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566 107 PAVKRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 107 p~~kr~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~l~ 157 (369)
+.+.+++||.|||++|++++.+|| ++|.+||++|||||+.||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 679999999999999999999998765
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=3.8e-13 Score=106.19 Aligned_cols=50 Identities=14% Similarity=0.447 Sum_probs=46.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ 104 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~ 104 (369)
.....+++||+|||++|+++|++|| .+|.+||++|++||..||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3445678999999999999999999 8999999999999999999999987
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.38 E-value=9.1e-14 Score=114.38 Aligned_cols=68 Identities=18% Similarity=0.392 Sum_probs=62.8
Q ss_pred CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCc
Q 017566 39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107 (369)
Q Consensus 39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p 107 (369)
|+...+|..+|...+.|..++++||+|||.+|+++|.+|| .+|..||+.|||||..||+.||+.++..
T Consensus 36 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 36 GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 5666789999999999999999999999999999999999 4799999999999999999999988754
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=105.98 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=45.0
Q ss_pred cccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 017566 108 AVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNST 155 (369)
Q Consensus 108 ~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~ 155 (369)
...+++||+|||++|+++|.+||.+|..||++|++||+.||++||+++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999864
No 46
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=9.2e-14 Score=115.09 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=62.9
Q ss_pred CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCc
Q 017566 39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDP 107 (369)
Q Consensus 39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p 107 (369)
|+...+|..+|...+.+..++|+||+|||.+|+++|.+||. +|..||+.|||||..||+.||+.++..
T Consensus 33 ~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 33 TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 56667889999999999999999999999999999999995 799999999999999999999887654
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=1.7e-12 Score=97.45 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=46.9
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCcHHHHH---hhCCCCCHHHHHHHHHHHHHhh
Q 017566 109 VKRKPFTDEEDQIIVAAHAVHGNKWAVIS---RLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 109 ~kr~~WT~EED~~Ll~lv~~~G~~W~~IA---~~l~gRT~~qck~Rw~~~l~rk 159 (369)
-++.+||+|||+.|+++|++||.+|+.|+ .++++||..++++||+++.++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5889999999999999987753
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.31 E-value=2.4e-13 Score=115.83 Aligned_cols=67 Identities=24% Similarity=0.508 Sum_probs=62.4
Q ss_pred CCCCcccccCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566 39 GDDSVVAVGEGSKRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 39 g~d~~~~~~~~~~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~ 106 (369)
|+...+|..||.+.+.+..++|+||+|||++|+++|.+|| .+|..||+.|||||..||+.||+.++.
T Consensus 42 ~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 42 NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5666789999999999999999999999999999999999 579999999999999999999987663
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.30 E-value=4.7e-13 Score=104.13 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CCChHHHHhhccCCCccccccccccccC
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFG---ARNWSLIARGIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g---~~nW~~IA~~lpgRt~~qcr~Rw~~~L~ 106 (369)
.....+++||++||++|+++|..|| ..+|.+||++|||||..||+.||.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3445678999999999999999999 3579999999999999999999987654
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=3.5e-12 Score=101.55 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=45.9
Q ss_pred CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhhhh
Q 017566 112 KPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 112 ~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||++++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 48999999999999999998 89999995 8999999999999999987543
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=5.6e-13 Score=107.36 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=50.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccC
Q 017566 51 KRSGRSRVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 51 ~~~~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~ 106 (369)
....+...+|+||+|||++|+++|..||. +|..||..|+|||..||+.||.++|.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 45567788999999999999999999996 79999999999999999999998875
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.25 E-value=8.4e-12 Score=103.44 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=48.9
Q ss_pred ccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhhC----CCCCHHHHHHHHHHHHHhhh
Q 017566 107 PAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRLL----PGRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 107 p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----~gRT~~qck~Rw~~~l~rk~ 160 (369)
+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||++++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999998 899999965 89999999999999998653
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.25 E-value=6.7e-12 Score=106.43 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=50.9
Q ss_pred ccCccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhh
Q 017566 104 QLDPAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 104 ~L~p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk 159 (369)
-+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3556778999999999999999999998 89999997 48999999999999999864
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=3.4e-12 Score=119.07 Aligned_cols=55 Identities=29% Similarity=0.511 Sum_probs=48.5
Q ss_pred ccccCCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566 107 PAVKRKPFTDEEDQIIVAAHAVHGNK------WAVISRLLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 107 p~~kr~~WT~EED~~Ll~lv~~~G~~------W~~IA~~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
+.+++++||+|||++|+++|.+||++ |+.||++|+|||++|||+||+.+|++++-
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999985 99999999999999999999999998753
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=1.7e-11 Score=99.61 Aligned_cols=50 Identities=26% Similarity=0.543 Sum_probs=45.4
Q ss_pred cCCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 110 KRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 110 kr~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
.+++||.|||++|++++.+|| ++|.+||++|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987653
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.17 E-value=3.2e-11 Score=102.37 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=48.4
Q ss_pred ccccCCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHHHhhh
Q 017566 107 PAVKRKPFTDEEDQIIVAAHAVHGN-KWAVISRL----LPGRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 107 p~~kr~~WT~EED~~Ll~lv~~~G~-~W~~IA~~----l~gRT~~qck~Rw~~~l~rk~ 160 (369)
...++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999998 89999996 489999999999999998653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.08 E-value=2.5e-11 Score=98.57 Aligned_cols=47 Identities=17% Similarity=0.522 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCChHHHHhhccCCCcccccccccccc
Q 017566 59 KGPWSPEQDAVLSELVSKFG---ARNWSLIARGIAGRSGKSCRLRWCNQL 105 (369)
Q Consensus 59 kg~WT~EED~~L~~lV~~~g---~~nW~~IA~~lpgRt~~qcr~Rw~~~L 105 (369)
++.||+|||++|++++.+|| ..+|.+||+.|||||..||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57899999999999999998 457999999999999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.1e-10 Score=85.97 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=43.6
Q ss_pred cCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 017566 110 KRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTL 156 (369)
Q Consensus 110 kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l 156 (369)
...+||+||++++++++.+||++|..||.+|++||..||+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997643
No 59
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.96 E-value=6.4e-10 Score=102.94 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=58.5
Q ss_pred ChHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 017566 81 NWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 81 nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~ 160 (369)
+|+.+...|..+.... .++++.--.......+||+||++++++++.+||++|..||++|++||..||+++|+++.+|-.
T Consensus 104 ~~kQ~~~~L~~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 104 NIKQTNSALKEKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp HHHHHHHHHHHHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 4555555553333222 224443222223457999999999999999999999999999999999999999998887743
Q ss_pred h
Q 017566 161 V 161 (369)
Q Consensus 161 ~ 161 (369)
.
T Consensus 183 L 183 (235)
T 2iw5_B 183 I 183 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=88.23 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=56.9
Q ss_pred ccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHHHHHhhC-----CCCCHHHHHHHHHHHHHhhhh
Q 017566 94 GKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWAVISRLL-----PGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 94 ~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----~gRT~~qck~Rw~~~l~rk~~ 161 (369)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++-+.
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678899999966 89999999999999999999999999988 589999999999998776543
No 61
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.89 E-value=8.3e-10 Score=112.54 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=45.5
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566 112 KPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 112 ~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
.+||.||..++++++.+||.+|..||+.|++||..|||++|.++.++...
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCh
Confidence 48999999999999999999999999999999999999999876665433
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=81.60 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566 57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ 104 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~ 104 (369)
...++||+||+++|.+++.+|| .+|..||.+||+||..||..+|...
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4567899999999999999999 5899999999999999999998653
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.85 E-value=1.3e-09 Score=81.80 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHH---hhccCCCccccccccccccC
Q 017566 56 SRVKGPWSPEQDAVLSELVSKFGARNWSLIA---RGIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 56 ~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA---~~lpgRt~~qcr~Rw~~~L~ 106 (369)
...+++||+|||+.|+++|++||. +|..|+ .++++||...+++||++...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 346789999999999999999996 999999 46789999999999987653
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.85 E-value=3.1e-09 Score=82.30 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=44.7
Q ss_pred cccCCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 108 AVKRKPFTDEEDQIIVAAHAVHG----NKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 108 ~~kr~~WT~EED~~Ll~lv~~~G----~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
..+.+.||.|||++|.+++.+|+ ++|.+||.+| |||..+|++||+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999997 5699999998 99999999999987654
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=4.9e-09 Score=81.18 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CCChHHHHhhccCCCccccccccccccC
Q 017566 57 RVKGPWSPEQDAVLSELVSKFG---ARNWSLIARGIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g---~~nW~~IA~~lpgRt~~qcr~Rw~~~L~ 106 (369)
...+.||.|||++|.+++.+|+ +++|.+||+.| |||..||+.||..+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3457899999999999999998 35699999998 9999999999986543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.64 E-value=2.5e-08 Score=77.39 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=43.5
Q ss_pred CCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 111 RKPFTDEEDQIIVAAHAVHGN----KWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
...||.+|+++|.+++..|+. +|.+||..|+|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 599999999999999999999987544
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.55 E-value=4e-08 Score=76.19 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChHHHHhhccCCCccccccccccccC
Q 017566 60 GPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~---~nW~~IA~~lpgRt~~qcr~Rw~~~L~ 106 (369)
..||.+|+++|.+++..|+. ++|.+||..|||||..+|+.||...+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46999999999999999984 579999999999999999999987654
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.49 E-value=1.2e-07 Score=70.53 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=43.0
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCc-HHHHHh-hCCCCCHHHHHHHHHHHHH
Q 017566 111 RKPFTDEEDQIIVAAHAVH--------GNK-WAVISR-LLPGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~--------G~~-W~~IA~-~l~gRT~~qck~Rw~~~l~ 157 (369)
|.+||+|||..|++.|.+| |++ |..+++ .++++|-.++|+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 666 999999 8999999999999998764
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.45 E-value=1.1e-07 Score=88.07 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccccc
Q 017566 57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL 105 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L 105 (369)
....+||+||+++|++++.+|| .+|..||+.|++||..||+.+|.++.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999 68999999999999999999998765
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.41 E-value=7.9e-08 Score=71.60 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChHHHHh-hccCCCccccccccccccC
Q 017566 59 KGPWSPEQDAVLSELVSKF--------GARNWSLIAR-GIAGRSGKSCRLRWCNQLD 106 (369)
Q Consensus 59 kg~WT~EED~~L~~lV~~~--------g~~nW~~IA~-~lpgRt~~qcr~Rw~~~L~ 106 (369)
+.+||+|||.+|+.+|.+| |..-|+.+|+ .++++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 3334999999 8999999999999998874
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.35 E-value=8e-07 Score=86.06 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccc-------ccccc----------------------------
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRL-------RWCNQ---------------------------- 104 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~-------Rw~~~---------------------------- 104 (369)
+.||..+...++.++.+||..+|..||..|+|+|...++. ||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999989999999999999877644 22100
Q ss_pred ------------c---CccccCCCCChHHHHHHHHHHHHhCC---c-HHHHH---h---------hCCCCCHHHHHHHHH
Q 017566 105 ------------L---DPAVKRKPFTDEEDQIIVAAHAVHGN---K-WAVIS---R---------LLPGRTDNAIKNHWN 153 (369)
Q Consensus 105 ------------L---~p~~kr~~WT~EED~~Ll~lv~~~G~---~-W~~IA---~---------~l~gRT~~qck~Rw~ 153 (369)
| .+..+...||++||+.||-++.+||- . |..|. + ++..||+.+|..|-+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0 11224468999999999999999996 4 99996 2 456799999999999
Q ss_pred HHHHh
Q 017566 154 STLRR 158 (369)
Q Consensus 154 ~~l~r 158 (369)
.+++-
T Consensus 271 tLi~~ 275 (304)
T 1ofc_X 271 TLITL 275 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1.1e-06 Score=66.15 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=44.5
Q ss_pred ccccCCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 017566 107 PAVKRKPFTDEEDQIIVAAHAVHGNKWAVISR-LLPGRTDNAIKNHWNS 154 (369)
Q Consensus 107 p~~kr~~WT~EED~~Ll~lv~~~G~~W~~IA~-~l~gRT~~qck~Rw~~ 154 (369)
|.+...+||+||.+++.+++.+||.+|..|++ +|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56778899999999999999999999999999 6999999999998864
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.22 E-value=1.5e-06 Score=69.56 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566 111 RKPFTDEEDQIIVAAHAVHGN---KWAVISRLLPGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~---~W~~IA~~l~gRT~~qck~Rw~~~l~ 157 (369)
---||.|||+.||..+++-|. .|+.||+.|.+|+++||++||+.+++
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 347999999999999999997 69999999999999999999998765
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.21 E-value=1.4e-07 Score=72.86 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChHHHHhhccCCCccccccccc
Q 017566 60 GPWSPEQDAVLSELVSKFGA---RNWSLIARGIAGRSGKSCRLRWC 102 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~---~nW~~IA~~lpgRt~~qcr~Rw~ 102 (369)
..||.+|+++|.+++..|+. .+|.+||+.|||||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46999999999999999984 37999999999999999999985
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.37 E-value=4.1e-07 Score=69.12 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=41.9
Q ss_pred CCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566 112 KPFTDEEDQIIVAAHAVHGN---KWAVISRLLPGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 112 ~~WT~EED~~Ll~lv~~~G~---~W~~IA~~l~gRT~~qck~Rw~~~l~ 157 (369)
--||.|||+.||..+++-|. .|+.||..| +|+++||.+||+.+++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 36999999999999999998 699999999 9999999999998765
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.07 E-value=7.3e-07 Score=68.88 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=38.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHH
Q 017566 111 RKPFTDEEDQIIVAAHAVHGN----KWAVISRLLPGRTDNAIKNHWN 153 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~----~W~~IA~~l~gRT~~qck~Rw~ 153 (369)
..+||.+|+++|.+++.+|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 6999999999999999999985
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=4.5e-06 Score=62.70 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=42.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHh-hccCCCcccccccccc
Q 017566 54 GRSRVKGPWSPEQDAVLSELVSKFGARNWSLIAR-GIAGRSGKSCRLRWCN 103 (369)
Q Consensus 54 ~~~~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~-~lpgRt~~qcr~Rw~~ 103 (369)
+|......||+||-+++.+++.+||. +|..|++ .|++|+..||...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence 45556678999999999999999994 8999999 5999999999887653
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.91 E-value=2e-05 Score=60.37 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 017566 111 RKPFTDEEDQIIVAAHAVHGNKWAVISR-LLPGRTDNAIKNHWNS 154 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~-~l~gRT~~qck~Rw~~ 154 (369)
..+||+||.+++.+++.+||.+|..|++ +|++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 6999999999999873
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.81 E-value=2.7e-05 Score=63.03 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHH
Q 017566 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNS 154 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~ 154 (369)
...||+||.+++.+++..||++|..||.+|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998864
No 80
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.76 E-value=6.3e-05 Score=60.68 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHhhCC-----CCCHHHHHHHHHHHHHhhh
Q 017566 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLP-----GRTDNAIKNHWNSTLRRRG 160 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~-----gRT~~qck~Rw~~~l~rk~ 160 (369)
...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++-+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998763 7999999999999877653
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.58 E-value=4.2e-05 Score=78.13 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc
Q 017566 57 RVKGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ 104 (369)
Q Consensus 57 ~~kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~ 104 (369)
+...+||.+|-.++++++.+|| .+|..||+.|++||..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3457899999999999999999 5899999999999999999988653
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.58 E-value=5e-05 Score=58.15 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHh-hccCCCccccccccc
Q 017566 58 VKGPWSPEQDAVLSELVSKFGARNWSLIAR-GIAGRSGKSCRLRWC 102 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g~~nW~~IA~-~lpgRt~~qcr~Rw~ 102 (369)
....||+||-+++.+++.+||. +|..|++ .|++|+..+|...|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence 3457999999999999999995 8999999 699999999988665
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.48 E-value=6.1e-05 Score=60.91 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccc
Q 017566 59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWC 102 (369)
Q Consensus 59 kg~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~ 102 (369)
...||+||.+++.+++..|| .+|..||..||+||..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence 46799999999999999999 58999999999999999988664
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.41 E-value=0.00062 Score=61.71 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCChHHHHhh--ccCCCccccccccc-------c-----------------------
Q 017566 58 VKGPWSPEQDAVLSELVSKFG--ARNWSLIARG--IAGRSGKSCRLRWC-------N----------------------- 103 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g--~~nW~~IA~~--lpgRt~~qcr~Rw~-------~----------------------- 103 (369)
....||..|-..|++++.+|| ..+|..|++. |.+|+...++.-+. +
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT 85 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence 345799999999999999999 5689999864 56777644332000 0
Q ss_pred ---------------------cc----------------C----ccccCCCCChHHHHHHHHHHHHhC-CcHHHHHh--h
Q 017566 104 ---------------------QL----------------D----PAVKRKPFTDEEDQIIVAAHAVHG-NKWAVISR--L 139 (369)
Q Consensus 104 ---------------------~L----------------~----p~~kr~~WT~EED~~Ll~lv~~~G-~~W~~IA~--~ 139 (369)
.| . +......||.+||..||.++.+|| .+|..|-. .
T Consensus 86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~ 165 (211)
T 4b4c_A 86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD 165 (211)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence 00 0 000123599999999999999999 67999965 2
Q ss_pred C------------CCCCHHHHHHHHHHHHH
Q 017566 140 L------------PGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 140 l------------~gRT~~qck~Rw~~~l~ 157 (369)
| ..+++..+..|...+|+
T Consensus 166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 166 LSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred cCccccccccccccCCChHHHHHHHHHHHH
Confidence 2 12456789999876665
No 85
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.35 E-value=0.0001 Score=59.59 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhc-----cCCCcccccccccccc
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARGI-----AGRSGKSCRLRWCNQL 105 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~l-----pgRt~~qcr~Rw~~~L 105 (369)
..||.||++.|.+|+++|+. +|..|+..+ ++||..+.+.||....
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999995 799999998 4899999999997644
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=0.00046 Score=54.31 Aligned_cols=48 Identities=15% Similarity=0.394 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC----------cHHHHHhhCC----CCCHHHHHHHHHHHHHh
Q 017566 111 RKPFTDEEDQIIVAAHAVHGN----------KWAVISRLLP----GRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~----------~W~~IA~~l~----gRT~~qck~Rw~~~l~r 158 (369)
...||.+|-.+||.++..+.. .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999875321 3999999763 69999999999997665
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.09 E-value=0.0013 Score=65.16 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-CCCcccccc-------ccccc---------------------------
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRL-------RWCNQ--------------------------- 104 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-gRt~~qcr~-------Rw~~~--------------------------- 104 (369)
+.||.-+=..++.++.+||..+-..||..|. |+|...++. ||...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999889999999997 888866653 11110
Q ss_pred -------------c----Ccc-ccCCCCChHHHHHHHHHHHHhCC----cHHHHHhh------------CCCCCHHHHHH
Q 017566 105 -------------L----DPA-VKRKPFTDEEDQIIVAAHAVHGN----KWAVISRL------------LPGRTDNAIKN 150 (369)
Q Consensus 105 -------------L----~p~-~kr~~WT~EED~~Ll~lv~~~G~----~W~~IA~~------------l~gRT~~qck~ 150 (369)
| .+. .+...||++||..||-++.+||- .|..|-.. |..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 111 13457999999999999999995 49999432 35799999999
Q ss_pred HHHHHHHh
Q 017566 151 HWNSTLRR 158 (369)
Q Consensus 151 Rw~~~l~r 158 (369)
|-..+++-
T Consensus 284 Rc~tLi~~ 291 (374)
T 2y9y_A 284 RGNTLLQC 291 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.86 E-value=0.00022 Score=56.19 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC------C---ChHHHHhhcc----CCCcccccccccccc
Q 017566 58 VKGPWSPEQDAVLSELVSKFGA------R---NWSLIARGIA----GRSGKSCRLRWCNQL 105 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g~------~---nW~~IA~~lp----gRt~~qcr~Rw~~~L 105 (369)
+...||.+|-..|+.+...... . .|..||..|. .||+.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999986421 1 3999999874 799999999998654
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.63 E-value=0.00032 Score=53.25 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChHHHHhhccCCCcccccccccccc
Q 017566 60 GPWSPEQDAVLSELVSKFGA--RNWSLIARGIAGRSGKSCRLRWCNQL 105 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~--~nW~~IA~~lpgRt~~qcr~Rw~~~L 105 (369)
-.||.|||..|+...++-|+ .-|..||+.| +|++.|+.+||...+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 36999999999999999995 3599999999 999999999998755
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.57 E-value=0.0017 Score=51.99 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CChHHHHhhccCCCccccccccccc
Q 017566 58 VKGPWSPEQDAVLSELVSKFGA--RNWSLIARGIAGRSGKSCRLRWCNQ 104 (369)
Q Consensus 58 ~kg~WT~EED~~L~~lV~~~g~--~nW~~IA~~lpgRt~~qcr~Rw~~~ 104 (369)
+--.||.|||..|+...++-|. ..|..||+.|.+|+..|+.+||+..
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3457999999999999999985 4699999999999999999999753
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.22 E-value=0.012 Score=44.25 Aligned_cols=50 Identities=20% Similarity=0.099 Sum_probs=42.6
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCc---HHHHHhhC--CCCCHHHHHHHHHHHHHh
Q 017566 109 VKRKPFTDEEDQIIVAAHAVHGNK---WAVISRLL--PGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 109 ~kr~~WT~EED~~Ll~lv~~~G~~---W~~IA~~l--~gRT~~qck~Rw~~~l~r 158 (369)
..+-.||+|.++.+++++.++|.. |..|-+.| +|.|..+|+.|.+.|..+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999965 88998864 689999999998876543
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.83 E-value=0.017 Score=46.50 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhcc-----CCCcccccccccccc
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARGIA-----GRSGKSCRLRWCNQL 105 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lp-----gRt~~qcr~Rw~~~L 105 (369)
..||.||...|..|+.+|+. +|.-|+.... .||..+.++||....
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999995 7999998763 689999999987643
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.99 E-value=0.08 Score=51.14 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 111 RKPFTDEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
.+.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 467999999999999999997 599999999999999998776665543
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.09 E-value=0.093 Score=39.37 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHhhcc--CCCcccccccccc
Q 017566 56 SRVKGPWSPEQDAVLSELVSKFGARN--WSLIARGIA--GRSGKSCRLRWCN 103 (369)
Q Consensus 56 ~~~kg~WT~EED~~L~~lV~~~g~~n--W~~IA~~lp--gRt~~qcr~Rw~~ 103 (369)
.+.+-.||+|..+.++.+|...|... |+.|.+.|. |.|..+++-+..+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44567899999999999999999432 899999874 7788777665443
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.57 E-value=0.15 Score=45.74 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=40.9
Q ss_pred ccCCCCChHHHHHHHHHHHHhC---CcHHHHHh--hCCCCCHHHHHHHHHHHHHh
Q 017566 109 VKRKPFTDEEDQIIVAAHAVHG---NKWAVISR--LLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 109 ~kr~~WT~EED~~Ll~lv~~~G---~~W~~IA~--~l~gRT~~qck~Rw~~~l~r 158 (369)
-....||+.|-..|++++.+|| .+|..|+. .|.++|..+|+..+..++.+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999 46999987 48899999999877765544
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.41 E-value=0.19 Score=47.76 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHh
Q 017566 61 PWSPEQDAVLSELVSKFGARNWSLIAR 87 (369)
Q Consensus 61 ~WT~EED~~L~~lV~~~g~~nW~~IA~ 87 (369)
.|+.+||..|+..|.+||.++|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999999999975
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.58 E-value=2.8 Score=39.66 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHhC---CcHHHHHh--hCCCCCHHHHHHHHHHHHHh
Q 017566 111 RKPFTDEEDQIIVAAHAVHG---NKWAVISR--LLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G---~~W~~IA~--~l~gRT~~qck~Rw~~~l~r 158 (369)
+++||+.|-+.|++.+.+|| .+|..|+. .|+.++...++.-|+.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 47999987 68899999999988877654
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=74.92 E-value=4.9 Score=28.47 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 117 EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.+..++.++...|..+..||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 555667777778899999999999 88999999887765544
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=71.49 E-value=6.6 Score=28.60 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 116 DEEDQIIVAAHAV----HGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 116 ~EED~~Ll~lv~~----~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
++.+..++.++.. .|..|..||..+ |-+...|+.+....+++
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3445566666554 578899999999 99999999987766554
No 100
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=69.80 E-value=2.4 Score=27.06 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=15.5
Q ss_pred chHHHHHHhhhhhhHHhh
Q 017566 332 SYELAAIATDISNVAWLK 349 (369)
Q Consensus 332 ~~~~~~~~~~~~~~aw~~ 349 (369)
-+||-+||.+|.-|||-.
T Consensus 8 aqelkaiakelkaiawed 25 (35)
T 3r46_A 8 AQELKAIAKELKAIAWED 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 378999999999999954
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=69.13 E-value=4 Score=33.45 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=30.4
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 121 IIVAAHAVHG--------NKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 121 ~Ll~lv~~~G--------~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
.|..+|...| +.|..||..|.--....+|.+|.++|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 6778888887 3699999987544488999999998865
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=67.92 E-value=6.8 Score=28.10 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH----HhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 117 EEDQIIVAAHA----VHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 117 EED~~Ll~lv~----~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.+..++.++. ..|..+.+||..+ |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555566654 3578899999999 99999999988876654
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=65.68 E-value=9.5 Score=30.46 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHHHh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPGRT----DNAIKNHWNSTLRR 158 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~gRT----~~qck~Rw~~~l~r 158 (369)
-.|..+|.+.| +.|..||..|.--. ...+|..|.++|..
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777787887 46999999884322 46889999888765
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=64.04 E-value=11 Score=37.08 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCc-HHHHHhhCC-CCCHHHHHHHHHH
Q 017566 111 RKPFTDEEDQIIVAAHAVHGNK-WAVISRLLP-GRTDNAIKNHWNS 154 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~~-W~~IA~~l~-gRT~~qck~Rw~~ 154 (369)
.+.||.-+=..++.++.+||.. -..||..|. |.|..+|+..+..
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~v 168 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKA 168 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHH
Confidence 4579999999999999999976 999999997 9999999954443
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=63.09 E-value=8.3 Score=31.56 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHHHhh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPGRT----DNAIKNHWNSTLRRR 159 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~gRT----~~qck~Rw~~~l~rk 159 (369)
-+|..+|.+.| +.|..|+..|.--. ...+|.+|.++|..-
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46788888888 36999999883322 568899998887653
No 106
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=62.78 E-value=11 Score=28.59 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 117 EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.++.++.++...|..-..||..| |-+...|+.|....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456677777778899999999999 99999999988776544
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=61.40 E-value=11 Score=31.19 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHHHhh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPGRT----DNAIKNHWNSTLRRR 159 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~gRT----~~qck~Rw~~~l~rk 159 (369)
-+|..+|.++| +.|..||..|.--+ ...+|..|.++|..-
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46778888887 36999999874332 468899998887653
No 108
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.27 E-value=11 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHHHhh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPGRT----DNAIKNHWNSTLRRR 159 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~gRT----~~qck~Rw~~~l~rk 159 (369)
-+|..+|.++| +.|..|+..|.--. ...+|.+|.++|..-
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46778888887 36999999883322 368888898887653
No 109
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=59.24 E-value=10 Score=33.26 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=23.6
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCCCChHHHHh
Q 017566 55 RSRVKGPWSPEQDAVL--------SELVSKFGARNWSLIAR 87 (369)
Q Consensus 55 ~~~~kg~WT~EED~~L--------~~lV~~~g~~nW~~IA~ 87 (369)
|....|-||+|+|+.| .+++++|| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 5688999999999886 47888888 555544
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=57.05 E-value=8.3 Score=32.01 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=30.0
Q ss_pred HHHHHHHHhCC--------cHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 121 IIVAAHAVHGN--------KWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 121 ~Ll~lv~~~G~--------~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
.|..+|.+.|. .|..|+..|.--....+|..|.++|..-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 56677777763 5999999774444899999999988763
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=54.01 E-value=27 Score=25.20 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 114 FTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 114 WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+|+.|- .++.++ ..|..-..||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554 444555 6788899999999 88999999988876655
No 112
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=53.92 E-value=20 Score=26.95 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 117 EEDQIIVAAHAV----HGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 117 EED~~Ll~lv~~----~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.++.++.+... .|..+..||..| |-+...|+.+....+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445556666554 577899999999 99999999987765544
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=52.00 E-value=18 Score=30.71 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCC--C---CHHHHHHHHHHHHHh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPG--R---TDNAIKNHWNSTLRR 158 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~g--R---T~~qck~Rw~~~l~r 158 (369)
-.|..+|.+.| +.|..|+..|.- . ....+|..|.++|..
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46778888887 369999998732 1 256889999988765
No 114
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.22 E-value=5.9 Score=32.39 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=29.3
Q ss_pred HHHHHHHHhC-------CCChHHHHhhccCCCccccccccccccCc
Q 017566 69 VLSELVSKFG-------ARNWSLIARGIAGRSGKSCRLRWCNQLDP 107 (369)
Q Consensus 69 ~L~~lV~~~g-------~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p 107 (369)
+|..+|.+.| ...|..||..|.--.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 6888899887 23699999988543367777778777754
No 115
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=50.92 E-value=21 Score=29.51 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhC--------CcHHHHHhhCCC--C---CHHHHHHHHHHHHHhh
Q 017566 119 DQIIVAAHAVHG--------NKWAVISRLLPG--R---TDNAIKNHWNSTLRRR 159 (369)
Q Consensus 119 D~~Ll~lv~~~G--------~~W~~IA~~l~g--R---T~~qck~Rw~~~l~rk 159 (369)
--.|..+|..+| +.|..||..|.- . ....+|..|.++|..-
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 346888888888 469999998732 2 2578899999888653
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=50.40 E-value=10 Score=30.32 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCC-----CCHHHHHHHHHHHHHh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPG-----RTDNAIKNHWNSTLRR 158 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~g-----RT~~qck~Rw~~~l~r 158 (369)
-.|..+|.+.| +.|..||..|.- -...++|..|.++|..
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777788887 469999997732 1246899999988865
No 117
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=50.35 E-value=27 Score=29.29 Aligned_cols=35 Identities=6% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 123 VAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 123 l~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.++...|-....||..| |-+...|+++....+++
T Consensus 149 l~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 149 ITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 334444577899999999 99999999988776544
No 118
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=49.83 E-value=7.6 Score=30.41 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCC----CHHHHHHHHHHHHHh
Q 017566 121 IIVAAHAVHG--------NKWAVISRLLPGR----TDNAIKNHWNSTLRR 158 (369)
Q Consensus 121 ~Ll~lv~~~G--------~~W~~IA~~l~gR----T~~qck~Rw~~~l~r 158 (369)
.|..+|.+.| +.|..|+..|.-- ...++|.+|.++|..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 5777777776 4699999977321 256788888776643
No 119
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=47.44 E-value=8.3 Score=32.01 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.0
Q ss_pred HHHHHHHHhC-------CCChHHHHhhccC-CC----ccccccccccccCccccCCCCChHHHHHHHHHHH
Q 017566 69 VLSELVSKFG-------ARNWSLIARGIAG-RS----GKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHA 127 (369)
Q Consensus 69 ~L~~lV~~~g-------~~nW~~IA~~lpg-Rt----~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~ 127 (369)
+|..+|.+.| ...|..||..|.- .+ +...+..|.++|.|--. .+++|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHHHH
Confidence 5667777766 2359999998841 21 24567788888876533 67888888876553
No 120
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.23 E-value=30 Score=26.52 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 113 PFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 113 ~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
..|+.|-+.|. ++ ..|..-..||..| |-+...|+.|....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666655544 45 7888999999999 89999999988776654
No 121
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.36 E-value=38 Score=27.07 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 117 EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.+..++.++...|-....||..+ |-+...|+.|....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445667777778899999999999 99999999887765543
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.60 E-value=31 Score=25.66 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 113 PFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 113 ~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
..|+.|-+.| .++ ..|..-.+||..| |-+...|+.|....+++
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4566665554 444 6888999999999 89999999988876655
No 123
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=45.31 E-value=22 Score=29.38 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCC-C----CHHHHHHHHHHHHHh
Q 017566 120 QIIVAAHAVHG--------NKWAVISRLLPG-R----TDNAIKNHWNSTLRR 158 (369)
Q Consensus 120 ~~Ll~lv~~~G--------~~W~~IA~~l~g-R----T~~qck~Rw~~~l~r 158 (369)
-+|..+|.++| +.|..||..|.- . ....+|.+|.++|-.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 46778888888 469999998732 1 256889999888854
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=45.00 E-value=35 Score=24.09 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 112 KPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 112 ~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
..+|+.|-+.|.. + ..|..-..||..+ |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467666655544 4 6788899999999 88999999988876654
No 125
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.57 E-value=20 Score=30.24 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 117 EEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 117 EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
+-|.+|+.+..+.|. .|..||+.+ |-+...|+.|++.+....+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 457888888888775 499999999 999999999999887766443
No 126
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.62 E-value=43 Score=22.80 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
+..++.+ ...|..-.+||..| |-+...|+.+...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4456666 46788899999999 899999999988776653
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.60 E-value=43 Score=25.63 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=35.8
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 111 RKPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 111 r~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
....|+.|-+.|.-++ .|..-..||..| |-+...|+.|...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3457877776655443 899999999999 999999999998877664
No 128
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=41.57 E-value=35 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 127 AVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 127 ~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
...|-....||..| |-+...|+.+....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 45677899999999 89999999988775544
No 129
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=41.40 E-value=41 Score=28.91 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 117 EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+.++.++.++...|-....||..| |-+...|+.+....+++
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 344455555556688899999999 99999999887765544
No 130
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=40.75 E-value=14 Score=31.62 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=28.3
Q ss_pred HHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHH
Q 017566 83 SLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVA 124 (369)
Q Consensus 83 ~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~ 124 (369)
..||.+|.|+|+.+||..|. + ...||+||++.|.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 67899999999999999763 3 34699999988754
No 131
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=40.43 E-value=38 Score=27.02 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 017566 115 TDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKN 150 (369)
Q Consensus 115 T~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~ 150 (369)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55667788888899999999999999 777776644
No 132
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=39.75 E-value=18 Score=30.20 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.8
Q ss_pred HHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 122 IVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 122 Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
++.++...|-....||..| |-+...|+++....+++
T Consensus 143 vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 143 LIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444445678899999999 89999999988776544
No 133
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=38.53 E-value=1.5e+02 Score=23.77 Aligned_cols=78 Identities=19% Similarity=0.088 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCcccccc---cccc--ccCcccc----CCCCChHHHHHHHHHHHHhC
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRL---RWCN--QLDPAVK----RKPFTDEEDQIIVAAHAVHG 130 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~---Rw~~--~L~p~~k----r~~WT~EED~~Ll~lv~~~G 130 (369)
...|.++-..++.++. .| .....||+.+ |.+...++. +|.. .+.+... ....+.+..+.|++++.+..
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 107 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNP 107 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 4689999888888884 45 4689999988 555444332 2221 1222211 23468888888888876643
Q ss_pred C-cHHHHHhhC
Q 017566 131 N-KWAVISRLL 140 (369)
Q Consensus 131 ~-~W~~IA~~l 140 (369)
. .-..|+..|
T Consensus 108 ~~s~~~i~~~l 118 (149)
T 1k78_A 108 TMFAWEIRDRL 118 (149)
T ss_dssp TCCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 2 223454433
No 134
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.45 E-value=36 Score=25.67 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 113 PFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 113 ~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
..|+.|-+.| .++ ..|..-..||..| |-+...|+.|....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3566665555 444 6788999999999 99999999988876655
No 135
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=37.73 E-value=37 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCCHHHHH
Q 017566 121 IIVAAHAVHGNKWAVISRLLPGRTDNAIK 149 (369)
Q Consensus 121 ~Ll~lv~~~G~~W~~IA~~l~gRT~~qck 149 (369)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 46666788999999999999 76666553
No 136
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=37.37 E-value=14 Score=29.51 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=28.1
Q ss_pred HHHHHHHHHhC-------CCChHHHHhhccC-C----CccccccccccccCc
Q 017566 68 AVLSELVSKFG-------ARNWSLIARGIAG-R----SGKSCRLRWCNQLDP 107 (369)
Q Consensus 68 ~~L~~lV~~~g-------~~nW~~IA~~lpg-R----t~~qcr~Rw~~~L~p 107 (369)
-+|..+|.+.| ...|..||..|.- . .+.+.+..|.++|.+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46888888887 2369999998841 1 135667778777765
No 137
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=37.21 E-value=35 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCCHHHHH
Q 017566 121 IIVAAHAVHGNKWAVISRLLPGRTDNAIK 149 (369)
Q Consensus 121 ~Ll~lv~~~G~~W~~IA~~l~gRT~~qck 149 (369)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 56666888999999999999 76666653
No 138
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.15 E-value=12 Score=30.50 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=26.9
Q ss_pred HHHHHHHHHhC-------CCChHHHHhhccCCC----ccccccccccccCc
Q 017566 68 AVLSELVSKFG-------ARNWSLIARGIAGRS----GKSCRLRWCNQLDP 107 (369)
Q Consensus 68 ~~L~~lV~~~g-------~~nW~~IA~~lpgRt----~~qcr~Rw~~~L~p 107 (369)
-+|..+|.+.| ...|..||..|.--. +.+.+..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46888898887 235999999884211 24556667666643
No 139
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=36.73 E-value=36 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 017566 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKN 150 (369)
Q Consensus 119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~ 150 (369)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778889999999999999 777776644
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=34.94 E-value=68 Score=26.18 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 117 EEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 117 EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
+-|..|+.++...|. .++.||+.+ |=+...|+.|.+.+....+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 446677887777764 599999999 889999999999887765443
No 141
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.22 E-value=69 Score=25.60 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017566 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLR 157 (369)
Q Consensus 117 EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~ 157 (369)
+.+..++.++...|..-..||..+ |-+...|+.+....++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344566677778899999999999 9999999988776554
No 142
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.73 E-value=2e+02 Score=23.41 Aligned_cols=77 Identities=17% Similarity=0.029 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhccCCCccccccccccc------cCcccc----CCCCChHHHHHHHHHHHHh
Q 017566 60 GPWSPEQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQ------LDPAVK----RKPFTDEEDQIIVAAHAVH 129 (369)
Q Consensus 60 g~WT~EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~------L~p~~k----r~~WT~EED~~Ll~lv~~~ 129 (369)
...|.++-..++.++. .| .....||+.+ |.+...++ ||.+. +.+... ....+.++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 3689999888888884 56 4689999988 45444433 23322 222111 2347888888888887654
Q ss_pred C-CcHHHHHhhC
Q 017566 130 G-NKWAVISRLL 140 (369)
Q Consensus 130 G-~~W~~IA~~l 140 (369)
. -.-..|+..|
T Consensus 100 ~~~s~~~i~~~l 111 (159)
T 2k27_A 100 PTMFAWEIRDRL 111 (159)
T ss_dssp SSSCHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 3 2233444433
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.76 E-value=53 Score=28.02 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566 116 DEEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 116 ~EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
.+-|..|+.++...|. .+..||+.+ |-+...|+.|.+.+....+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 3557788888877775 599999999 88999999999887766543
No 144
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=31.23 E-value=23 Score=30.10 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=27.9
Q ss_pred HHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHH
Q 017566 83 SLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVA 124 (369)
Q Consensus 83 ~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~ 124 (369)
..||.+|.|+|+.++|..|. + ...||+||++.|.+
T Consensus 120 ~~va~~i~gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 57888999999999999873 2 34699999988754
No 145
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.04 E-value=97 Score=19.22 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHH
Q 017566 113 PFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHW 152 (369)
Q Consensus 113 ~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw 152 (369)
..+.++-..++.++ .-|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666777665 4578899999999 88887776543
No 146
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=30.97 E-value=52 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 017566 119 DQIIVAAHAVHGNKWAVISRLLPGRTDNAIKN 150 (369)
Q Consensus 119 D~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~ 150 (369)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556667788899999999999 777776644
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.20 E-value=80 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=35.2
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 017566 112 KPFTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRR 159 (369)
Q Consensus 112 ~~WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~rk 159 (369)
...|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+...++++-
T Consensus 33 ~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 33 KRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 346777776654 44 4788999999999 889999999988877664
No 148
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.72 E-value=17 Score=29.91 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=24.9
Q ss_pred HHHHHHHHHhC-------CCChHHHHhhccCCC----ccccccccccccC
Q 017566 68 AVLSELVSKFG-------ARNWSLIARGIAGRS----GKSCRLRWCNQLD 106 (369)
Q Consensus 68 ~~L~~lV~~~g-------~~nW~~IA~~lpgRt----~~qcr~Rw~~~L~ 106 (369)
-+|..+|.+.| ...|..||..|.--. +.+.+..|.++|.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 46888888887 236999999884221 1344555555553
No 149
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=28.96 E-value=46 Score=26.06 Aligned_cols=45 Identities=24% Similarity=0.563 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCChHHHHhhccCCCccccccccccccCccc-------cCCCCChHHHHHHH
Q 017566 67 DAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAV-------KRKPFTDEEDQIIV 123 (369)
Q Consensus 67 D~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L~p~~-------kr~~WT~EED~~Ll 123 (369)
+.+|.+||+.|| |..+++.|.=| |- ..+|++ ++.||-.+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~----CF-----~~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNIN----CF-----KKDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSS----ST-----TSSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccc----cC-----CCCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 99999988533 22 234443 56788888777654
No 150
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=28.76 E-value=22 Score=30.72 Aligned_cols=41 Identities=34% Similarity=0.522 Sum_probs=29.8
Q ss_pred hHHHHhhccCCCccccccccccccCccccCCCCChHHHHHHHHHHHHhCCcHH
Q 017566 82 WSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQIIVAAHAVHGNKWA 134 (369)
Q Consensus 82 W~~IA~~lpgRt~~qcr~Rw~~~L~p~~kr~~WT~EED~~Ll~lv~~~G~~W~ 134 (369)
=..||.++.|+|+.+.|..|. + ...||+||++.+.+ .+.|+
T Consensus 126 c~~vA~~ikgktpeeiR~~f~------I-~nd~t~eEe~~ir~-----en~W~ 166 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN------I-VNDFTPEEEAAIRR-----ENEWA 166 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT------C-CCCCCHHHHHHHHT-----TC---
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH-----hcccc
Confidence 478899999999999998763 2 33599999998743 46675
No 151
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.34 E-value=79 Score=25.86 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 017566 117 EEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRRGV 161 (369)
Q Consensus 117 EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~ 161 (369)
+-|..|+.++...|. .++.||+.+ |-+...|..|.+.+....+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 346677887777765 599999999 88999999999988766544
No 152
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=27.95 E-value=89 Score=23.72 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHH
Q 017566 116 DEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNH 151 (369)
Q Consensus 116 ~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~R 151 (369)
.-|.+.|.+++..+|.+.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788899999999999999999 7665555433
No 153
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.48 E-value=79 Score=22.26 Aligned_cols=29 Identities=10% Similarity=-0.083 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHH
Q 017566 117 EEDQIIVAAHAVHGNKWAVISRLLPGRTDN 146 (369)
Q Consensus 117 EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~ 146 (369)
-|.+.|.+++..+|.+++..|+.| |=+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHH
Confidence 467788899999999999999988 54543
No 154
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.41 E-value=1.3e+02 Score=23.48 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 118 EDQIIVAAHAV----HGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 118 ED~~Ll~lv~~----~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
.++.++.+..- .|..+..||..| |-+...|+++-...+++
T Consensus 23 reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 23 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455555332 246799999999 88999888887765554
No 155
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.29 E-value=25 Score=29.58 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHhhccCCCcccccccccccc
Q 017566 65 EQDAVLSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQL 105 (369)
Q Consensus 65 EED~~L~~lV~~~g~~nW~~IA~~lpgRt~~qcr~Rw~~~L 105 (369)
+-|.+|+.++++.|.-.|..||+.+ |-+...|+.|+++..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKME 42 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4578899999988888999999998 778888887766543
No 156
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.08 E-value=1.2e+02 Score=24.66 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 117 EEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 117 EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
+-|..|+.++...|. .+..||+.+ |-+...|+.|.+.+....+..
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCcc
Confidence 346678888777765 599999999 889999999999887765544
No 157
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.94 E-value=47 Score=29.07 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=17.5
Q ss_pred ccccccccC-ccccCCCCChHHHHHHH
Q 017566 98 RLRWCNQLD-PAVKRKPFTDEEDQIIV 123 (369)
Q Consensus 98 r~Rw~~~L~-p~~kr~~WT~EED~~Ll 123 (369)
-+.|..-.. |....|-||.|+|+.|.
T Consensus 100 L~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 100 LNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 334433333 45678999999999875
No 158
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.60 E-value=1.2e+02 Score=25.07 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHHHhhhhh
Q 017566 117 EEDQIIVAAHAVHGN-KWAVISRLLPGRTDNAIKNHWNSTLRRRGVE 162 (369)
Q Consensus 117 EED~~Ll~lv~~~G~-~W~~IA~~l~gRT~~qck~Rw~~~l~rk~~~ 162 (369)
+-|..|+.++...|. .++.||+.+ |-+...|..|.+.+....+..
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 446677777777765 599999999 889999999999887766543
No 159
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.55 E-value=61 Score=27.35 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCC-------CChHHHHhhcc--CC---CccccccccccccCcc--ccCCCCChHHHHHHHH
Q 017566 68 AVLSELVSKFGA-------RNWSLIARGIA--GR---SGKSCRLRWCNQLDPA--VKRKPFTDEEDQIIVA 124 (369)
Q Consensus 68 ~~L~~lV~~~g~-------~nW~~IA~~lp--gR---t~~qcr~Rw~~~L~p~--~kr~~WT~EED~~Ll~ 124 (369)
-+|..+|.+.|. ..|..||..|. .. .+.+.+..|.++|.|- ..++.=+++|-+.-++
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~ 137 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAID 137 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 468888888872 35999999884 21 1346677788888763 2345444454444333
No 160
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.48 E-value=1.1e+02 Score=27.31 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 114 FTDEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 114 WT~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
.++. ++.++.++ ..|-.-.+||..| |.+...|+.|-...+++
T Consensus 198 L~~~-erevl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 198 LSER-EKEILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SCHH-HHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4443 44555555 5889999999999 99999999998876654
No 161
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.39 E-value=56 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 017566 120 QIIVAAHAVHGNKWAVISRLLPGRTDNAIKN 150 (369)
Q Consensus 120 ~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~ 150 (369)
..|..+....|..|..+|+.| |=+..+|..
T Consensus 15 ~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 15 VAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 345566677898999999999 777776644
No 162
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.30 E-value=60 Score=26.71 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 017566 116 DEEDQIIVAAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRR 158 (369)
Q Consensus 116 ~EED~~Ll~lv~~~G~~W~~IA~~l~gRT~~qck~Rw~~~l~r 158 (369)
+++++.++.++...|-.-.+||..| |-+...|++|....+++
T Consensus 95 p~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 95 TPLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp CTTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3455666677667788999999999 99999999988765443
Done!