Query 017567
Match_columns 369
No_of_seqs 138 out of 1020
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02696 1-deoxy-D-xylulose-5- 100.0 3E-139 7E-144 1052.9 32.0 342 27-369 4-350 (454)
2 COG0743 Dxr 1-deoxy-D-xylulose 100.0 8E-134 2E-138 988.9 26.6 287 76-369 1-287 (385)
3 TIGR00243 Dxr 1-deoxy-D-xylulo 100.0 9E-133 2E-137 990.4 28.9 290 76-368 1-291 (389)
4 PRK12464 1-deoxy-D-xylulose 5- 100.0 3E-131 6E-136 978.6 27.0 283 81-368 1-283 (383)
5 PRK05447 1-deoxy-D-xylulose 5- 100.0 4E-122 9E-127 915.2 29.3 288 76-368 1-288 (385)
6 PF08436 DXP_redisom_C: 1-deox 100.0 8E-58 1.7E-62 369.2 1.3 84 221-304 1-84 (84)
7 PF02670 DXP_reductoisom: 1-de 100.0 4.6E-48 9.9E-53 335.6 14.3 129 79-207 1-129 (129)
8 PRK06349 homoserine dehydrogen 98.3 2.9E-06 6.2E-11 86.3 10.2 116 76-222 3-127 (426)
9 PF03447 NAD_binding_3: Homose 98.0 1.3E-06 2.8E-11 72.6 0.7 109 85-222 2-115 (117)
10 PRK06270 homoserine dehydrogen 97.9 5.8E-05 1.3E-09 74.7 10.1 205 77-309 3-240 (341)
11 PRK13303 L-aspartate dehydroge 97.9 8.9E-05 1.9E-09 70.9 11.0 146 76-255 1-149 (265)
12 PRK11579 putative oxidoreducta 97.9 0.0013 2.8E-08 64.3 19.0 209 77-338 5-229 (346)
13 PRK13302 putative L-aspartate 97.8 0.00026 5.7E-09 68.1 12.6 143 75-251 5-148 (271)
14 PF01408 GFO_IDH_MocA: Oxidore 97.7 0.00063 1.4E-08 55.6 11.0 112 78-220 2-115 (120)
15 PRK08374 homoserine dehydrogen 97.6 0.00045 9.7E-09 68.6 10.2 126 77-222 3-145 (336)
16 PRK06813 homoserine dehydrogen 97.5 0.00015 3.2E-09 72.8 6.4 129 77-222 3-145 (346)
17 COG1748 LYS9 Saccharopine dehy 97.5 0.0012 2.7E-08 67.4 12.5 215 76-331 1-230 (389)
18 PRK06392 homoserine dehydrogen 97.5 0.00073 1.6E-08 67.2 10.3 201 78-308 2-229 (326)
19 PRK13304 L-aspartate dehydroge 97.4 0.0038 8.3E-08 59.7 13.3 145 77-254 2-148 (265)
20 PLN02819 lysine-ketoglutarate 97.3 0.0082 1.8E-07 68.1 17.3 195 75-297 568-790 (1042)
21 COG0673 MviM Predicted dehydro 97.2 0.0032 7E-08 60.0 10.7 210 75-333 2-232 (342)
22 PF03435 Saccharop_dh: Sacchar 97.2 0.0063 1.4E-07 60.2 12.8 186 79-293 1-205 (386)
23 TIGR03215 ac_ald_DH_ac acetald 97.1 0.007 1.5E-07 59.5 12.4 158 77-267 2-170 (285)
24 TIGR01761 thiaz-red thiazoliny 97.1 0.0033 7.2E-08 63.0 9.9 127 76-236 3-131 (343)
25 PF01118 Semialdhyde_dh: Semia 97.0 0.0013 2.8E-08 55.5 5.6 35 78-113 1-35 (121)
26 PRK09466 metL bifunctional asp 96.8 0.0056 1.2E-07 67.7 9.8 127 77-222 459-598 (810)
27 PRK10206 putative oxidoreducta 96.8 0.12 2.6E-06 51.1 17.9 200 77-329 2-217 (344)
28 PF05368 NmrA: NmrA-like famil 96.7 0.0089 1.9E-07 54.3 8.6 98 79-181 1-107 (233)
29 PRK04207 glyceraldehyde-3-phos 96.6 0.014 3.1E-07 58.1 10.0 110 76-200 1-110 (341)
30 PRK08300 acetaldehyde dehydrog 96.6 0.013 2.8E-07 58.3 9.5 160 76-268 4-177 (302)
31 COG0460 ThrA Homoserine dehydr 96.6 0.0038 8.2E-08 62.8 5.9 120 77-221 4-135 (333)
32 PRK09436 thrA bifunctional asp 96.5 0.013 2.8E-07 64.9 10.1 129 75-222 464-604 (819)
33 PRK00436 argC N-acetyl-gamma-g 96.5 0.0058 1.2E-07 60.7 6.4 92 76-194 2-94 (343)
34 COG4091 Predicted homoserine d 96.3 0.046 1E-06 56.1 11.9 156 71-236 12-171 (438)
35 PRK00048 dihydrodipicolinate r 96.3 0.011 2.4E-07 56.3 7.0 91 76-199 1-91 (257)
36 TIGR00036 dapB dihydrodipicoli 96.2 0.031 6.6E-07 53.8 9.8 98 77-199 2-99 (266)
37 TIGR01850 argC N-acetyl-gamma- 96.1 0.016 3.4E-07 57.8 7.3 34 77-111 1-34 (346)
38 PF13460 NAD_binding_10: NADH( 96.1 0.022 4.7E-07 49.4 7.2 37 79-119 1-37 (183)
39 PLN02700 homoserine dehydrogen 96.0 0.062 1.3E-06 55.0 10.9 55 167-222 108-162 (377)
40 PLN02968 Probable N-acetyl-gam 95.8 0.014 3.1E-07 59.2 5.7 40 74-114 36-75 (381)
41 TIGR01832 kduD 2-deoxy-D-gluco 95.6 0.14 3E-06 46.3 10.6 64 76-142 5-69 (248)
42 COG1712 Predicted dinucleotide 95.5 0.23 5E-06 48.4 12.0 141 78-251 2-144 (255)
43 PRK08040 putative semialdehyde 95.2 0.039 8.5E-07 55.4 6.2 38 76-114 4-43 (336)
44 PLN02778 3,5-epimerase/4-reduc 95.2 0.066 1.4E-06 51.5 7.5 52 77-130 10-62 (298)
45 PRK06935 2-deoxy-D-gluconate 3 95.2 0.22 4.8E-06 45.6 10.5 65 76-142 15-80 (258)
46 PRK10538 malonic semialdehyde 95.0 0.26 5.7E-06 45.0 10.6 83 77-178 1-84 (248)
47 PF04321 RmlD_sub_bind: RmlD s 95.0 0.07 1.5E-06 51.2 7.1 54 77-132 1-58 (286)
48 PRK08219 short chain dehydroge 95.0 0.14 2.9E-06 45.4 8.3 40 76-120 3-42 (227)
49 PRK07326 short chain dehydroge 94.9 0.3 6.5E-06 43.7 10.4 81 77-176 7-90 (237)
50 PRK07806 short chain dehydroge 94.9 0.37 8E-06 43.6 11.0 65 76-142 6-73 (248)
51 PRK12829 short chain dehydroge 94.8 0.34 7.3E-06 44.0 10.6 82 77-177 12-95 (264)
52 PRK06728 aspartate-semialdehyd 94.8 0.061 1.3E-06 54.4 6.3 36 77-113 6-44 (347)
53 PRK11863 N-acetyl-gamma-glutam 94.8 0.045 9.7E-07 54.6 5.2 56 76-133 2-58 (313)
54 PLN02657 3,8-divinyl protochlo 94.7 0.3 6.5E-06 49.1 11.0 32 76-109 60-91 (390)
55 TIGR03855 NAD_NadX aspartate d 94.7 0.38 8.3E-06 45.9 11.0 90 160-254 30-124 (229)
56 PRK08267 short chain dehydroge 94.6 0.39 8.4E-06 44.0 10.6 46 76-125 1-46 (260)
57 PRK06101 short chain dehydroge 94.6 0.28 6E-06 44.7 9.6 65 76-144 1-65 (240)
58 COG1086 Predicted nucleoside-d 94.5 0.16 3.5E-06 54.6 8.9 113 75-192 249-367 (588)
59 TIGR01214 rmlD dTDP-4-dehydror 94.5 0.11 2.4E-06 48.1 6.9 52 78-131 1-56 (287)
60 PRK12828 short chain dehydroge 94.5 0.33 7.2E-06 43.0 9.6 41 76-120 7-47 (239)
61 PRK08063 enoyl-(acyl carrier p 94.4 0.26 5.7E-06 44.5 8.9 82 77-176 5-90 (250)
62 COG0604 Qor NADPH:quinone redu 94.4 0.29 6.3E-06 48.4 9.9 95 76-196 143-238 (326)
63 PRK09186 flagellin modificatio 94.4 0.38 8.3E-06 43.6 10.0 64 76-143 4-73 (256)
64 PRK13394 3-hydroxybutyrate deh 94.4 0.39 8.4E-06 43.6 9.9 66 76-143 7-74 (262)
65 PRK07024 short chain dehydroge 94.3 0.61 1.3E-05 42.8 11.3 45 76-124 2-46 (257)
66 PRK05557 fabG 3-ketoacyl-(acyl 94.3 0.71 1.5E-05 41.0 11.3 66 75-143 4-73 (248)
67 PRK07523 gluconate 5-dehydroge 94.2 0.42 9.1E-06 43.6 9.9 63 77-143 11-77 (255)
68 PRK07231 fabG 3-ketoacyl-(acyl 94.2 0.47 1E-05 42.6 10.0 82 76-176 5-89 (251)
69 PRK12825 fabG 3-ketoacyl-(acyl 94.2 0.6 1.3E-05 41.4 10.6 65 76-143 6-74 (249)
70 PRK06196 oxidoreductase; Provi 94.2 0.47 1E-05 45.4 10.5 63 76-142 26-88 (315)
71 PLN02583 cinnamoyl-CoA reducta 94.1 0.3 6.6E-06 46.5 9.1 33 76-110 6-38 (297)
72 PF01370 Epimerase: NAD depend 94.1 0.067 1.5E-06 47.5 4.3 38 79-118 1-38 (236)
73 PRK12823 benD 1,6-dihydroxycyc 94.1 0.46 1E-05 43.3 9.9 50 76-127 8-57 (260)
74 PRK06057 short chain dehydroge 94.1 0.53 1.1E-05 43.1 10.2 62 76-142 7-68 (255)
75 PRK12481 2-deoxy-D-gluconate 3 94.0 0.55 1.2E-05 43.3 10.3 65 76-143 8-73 (251)
76 TIGR01851 argC_other N-acetyl- 94.0 0.084 1.8E-06 52.8 5.2 54 78-133 3-57 (310)
77 cd01078 NAD_bind_H4MPT_DH NADP 94.0 0.34 7.4E-06 43.6 8.6 44 77-124 29-72 (194)
78 PRK06947 glucose-1-dehydrogena 94.0 0.54 1.2E-05 42.5 9.9 64 76-142 2-69 (248)
79 PRK05717 oxidoreductase; Valid 93.9 0.66 1.4E-05 42.4 10.5 46 77-126 11-56 (255)
80 PRK08226 short chain dehydroge 93.9 0.6 1.3E-05 42.7 10.2 66 76-143 6-72 (263)
81 TIGR01181 dTDP_gluc_dehyt dTDP 93.8 0.19 4.1E-06 46.5 6.9 32 78-109 1-32 (317)
82 PRK07825 short chain dehydroge 93.8 0.72 1.6E-05 42.6 10.7 80 76-175 5-85 (273)
83 PRK12743 oxidoreductase; Provi 93.8 0.55 1.2E-05 43.1 9.8 64 76-142 2-69 (256)
84 PRK08628 short chain dehydroge 93.8 0.61 1.3E-05 42.5 10.1 64 77-142 8-72 (258)
85 PRK08265 short chain dehydroge 93.8 0.67 1.4E-05 42.9 10.4 64 76-143 6-70 (261)
86 PRK06482 short chain dehydroge 93.8 0.77 1.7E-05 42.5 10.8 62 77-142 3-65 (276)
87 PRK07774 short chain dehydroge 93.7 0.65 1.4E-05 41.9 10.0 64 77-142 7-72 (250)
88 COG0136 Asd Aspartate-semialde 93.6 0.12 2.6E-06 52.3 5.6 89 76-192 1-90 (334)
89 PRK08664 aspartate-semialdehyd 93.6 0.091 2E-06 52.3 4.7 32 76-108 3-34 (349)
90 PRK05693 short chain dehydroge 93.6 0.8 1.7E-05 42.4 10.7 40 76-119 1-40 (274)
91 PRK06182 short chain dehydroge 93.6 0.79 1.7E-05 42.5 10.6 84 76-181 3-86 (273)
92 PRK12939 short chain dehydroge 93.6 0.76 1.6E-05 41.3 10.2 45 76-124 7-51 (250)
93 PRK09987 dTDP-4-dehydrorhamnos 93.5 0.2 4.2E-06 47.9 6.7 51 77-130 1-59 (299)
94 cd05294 LDH-like_MDH_nadp A la 93.5 0.18 3.8E-06 49.6 6.5 49 77-125 1-49 (309)
95 CHL00194 ycf39 Ycf39; Provisio 93.5 0.38 8.1E-06 46.2 8.6 30 78-109 2-31 (317)
96 PRK05653 fabG 3-ketoacyl-(acyl 93.5 0.94 2E-05 40.2 10.5 81 77-176 6-90 (246)
97 PRK08278 short chain dehydroge 93.5 0.84 1.8E-05 42.7 10.7 64 77-142 7-79 (273)
98 PRK08263 short chain dehydroge 93.5 1 2.2E-05 41.8 11.2 46 76-125 3-48 (275)
99 PRK06138 short chain dehydroge 93.4 0.94 2E-05 40.8 10.5 64 76-143 5-71 (252)
100 PRK06200 2,3-dihydroxy-2,3-dih 93.4 0.87 1.9E-05 41.8 10.4 63 76-142 6-69 (263)
101 PRK08643 acetoin reductase; Va 93.4 0.81 1.8E-05 41.7 10.1 42 77-122 3-44 (256)
102 PRK07454 short chain dehydroge 93.4 1.1 2.4E-05 40.4 10.9 44 75-122 5-48 (241)
103 PRK07035 short chain dehydroge 93.4 0.81 1.8E-05 41.6 10.1 42 77-122 9-50 (252)
104 PRK07067 sorbitol dehydrogenas 93.3 0.98 2.1E-05 41.3 10.6 47 77-127 7-53 (257)
105 PRK08589 short chain dehydroge 93.3 0.72 1.6E-05 43.0 9.9 42 76-122 6-47 (272)
106 PRK08993 2-deoxy-D-gluconate 3 93.3 0.94 2E-05 41.6 10.4 64 77-143 11-75 (253)
107 COG4221 Short-chain alcohol de 93.2 0.96 2.1E-05 44.2 10.8 62 76-141 6-69 (246)
108 PRK06181 short chain dehydroge 93.2 0.96 2.1E-05 41.4 10.3 39 77-119 2-40 (263)
109 PRK06180 short chain dehydroge 93.2 1.1 2.4E-05 41.8 10.9 63 76-142 4-67 (277)
110 PLN02383 aspartate semialdehyd 93.2 0.14 3E-06 51.4 5.2 40 75-115 6-47 (344)
111 PRK15181 Vi polysaccharide bio 93.2 0.13 2.8E-06 50.1 4.8 38 71-110 10-47 (348)
112 PRK07814 short chain dehydroge 93.1 0.73 1.6E-05 42.5 9.6 32 76-109 10-41 (263)
113 TIGR03325 BphB_TodD cis-2,3-di 93.1 0.94 2E-05 41.7 10.2 45 76-124 5-49 (262)
114 PLN00141 Tic62-NAD(P)-related 93.1 0.53 1.2E-05 43.4 8.6 40 75-118 16-55 (251)
115 PF01113 DapB_N: Dihydrodipico 93.1 0.34 7.3E-06 41.4 6.8 36 77-113 1-36 (124)
116 PLN03209 translocon at the inn 93.1 0.73 1.6E-05 49.8 10.7 44 75-122 79-122 (576)
117 PRK06949 short chain dehydroge 93.1 1.5 3.2E-05 39.8 11.3 41 76-120 9-49 (258)
118 PRK09730 putative NAD(P)-bindi 93.0 1.1 2.3E-05 40.3 10.2 45 76-123 1-45 (247)
119 PRK12935 acetoacetyl-CoA reduc 93.0 1.1 2.3E-05 40.6 10.3 85 76-179 6-94 (247)
120 PRK12936 3-ketoacyl-(acyl-carr 92.9 1.4 3E-05 39.5 10.7 47 76-126 6-52 (245)
121 PRK06172 short chain dehydroge 92.9 0.88 1.9E-05 41.3 9.6 65 76-142 7-73 (253)
122 PRK12742 oxidoreductase; Provi 92.9 0.61 1.3E-05 41.7 8.5 50 76-128 6-55 (237)
123 PRK12744 short chain dehydroge 92.9 1.3 2.8E-05 40.6 10.7 64 77-142 9-78 (257)
124 PRK06194 hypothetical protein; 92.9 1.1 2.4E-05 41.7 10.4 64 76-143 6-73 (287)
125 PRK12827 short chain dehydroge 92.9 1 2.3E-05 40.2 9.9 47 76-124 6-54 (249)
126 PRK09135 pteridine reductase; 92.9 0.93 2E-05 40.6 9.5 40 77-119 7-46 (249)
127 PRK07890 short chain dehydroge 92.8 0.97 2.1E-05 41.0 9.7 42 76-121 5-46 (258)
128 PLN02695 GDP-D-mannose-3',5'-e 92.8 0.18 3.9E-06 50.0 5.4 35 76-112 21-55 (370)
129 PRK14874 aspartate-semialdehyd 92.8 0.16 3.5E-06 50.3 5.0 36 77-113 2-39 (334)
130 PRK12826 3-ketoacyl-(acyl-carr 92.8 1.1 2.4E-05 40.1 10.0 44 76-123 6-49 (251)
131 PRK05867 short chain dehydroge 92.7 0.87 1.9E-05 41.6 9.4 43 77-123 10-52 (253)
132 PRK05866 short chain dehydroge 92.7 1.9 4.2E-05 41.1 12.1 43 77-123 41-83 (293)
133 smart00846 Gp_dh_N Glyceraldeh 92.7 1.2 2.7E-05 39.7 10.0 107 78-197 2-117 (149)
134 PRK06500 short chain dehydroge 92.7 0.94 2E-05 40.7 9.4 47 77-127 7-53 (249)
135 PLN00112 malate dehydrogenase 92.6 0.57 1.2E-05 49.0 8.9 57 67-125 91-154 (444)
136 cd05286 QOR2 Quinone oxidoredu 92.6 1.8 3.9E-05 39.4 11.2 94 77-195 138-231 (320)
137 PRK09880 L-idonate 5-dehydroge 92.6 1.1 2.5E-05 43.2 10.4 94 77-198 171-265 (343)
138 COG1091 RfbD dTDP-4-dehydrorha 92.5 0.28 6.1E-06 48.5 6.2 51 78-131 2-56 (281)
139 PRK11908 NAD-dependent epimera 92.5 0.17 3.7E-06 48.8 4.7 33 76-109 1-33 (347)
140 PRK07060 short chain dehydroge 92.5 0.81 1.8E-05 41.1 8.7 61 77-142 10-70 (245)
141 PRK09134 short chain dehydroge 92.5 1 2.2E-05 41.3 9.5 65 76-143 9-77 (258)
142 PRK05565 fabG 3-ketoacyl-(acyl 92.5 1.2 2.7E-05 39.7 9.9 44 76-122 5-48 (247)
143 PLN02240 UDP-glucose 4-epimera 92.5 0.85 1.8E-05 43.7 9.3 31 77-109 6-36 (352)
144 PRK06128 oxidoreductase; Provi 92.5 1.3 2.8E-05 42.1 10.5 65 77-143 56-124 (300)
145 PRK07102 short chain dehydroge 92.5 0.84 1.8E-05 41.3 8.9 43 76-122 1-43 (243)
146 PRK07453 protochlorophyllide o 92.5 1.6 3.5E-05 41.8 11.2 46 75-124 5-50 (322)
147 PRK08416 7-alpha-hydroxysteroi 92.5 1.2 2.5E-05 41.1 9.9 46 76-124 8-53 (260)
148 COG0702 Predicted nucleoside-d 92.4 0.52 1.1E-05 42.8 7.4 64 77-147 1-64 (275)
149 COG2910 Putative NADH-flavin r 92.4 0.94 2E-05 43.2 9.2 39 77-119 1-39 (211)
150 PRK05671 aspartate-semialdehyd 92.3 0.22 4.7E-06 50.0 5.3 37 76-113 4-42 (336)
151 KOG1198 Zinc-binding oxidoredu 92.3 1.2 2.5E-05 45.0 10.4 139 72-259 154-292 (347)
152 cd08238 sorbose_phosphate_red 92.3 2.9 6.2E-05 41.9 13.1 62 221-296 343-404 (410)
153 TIGR01472 gmd GDP-mannose 4,6- 92.3 0.46 1E-05 45.8 7.3 32 77-110 1-32 (343)
154 cd08294 leukotriene_B4_DH_like 92.2 1.4 3.1E-05 41.3 10.4 94 77-196 145-238 (329)
155 PRK07478 short chain dehydroge 92.2 1.3 2.8E-05 40.4 9.8 62 77-142 7-72 (254)
156 PRK06914 short chain dehydroge 92.1 1.3 2.9E-05 40.9 9.9 39 77-119 4-42 (280)
157 PRK07063 short chain dehydroge 92.1 1.4 3E-05 40.4 9.9 45 76-124 7-51 (260)
158 PRK07904 short chain dehydroge 92.1 2.1 4.5E-05 39.8 11.1 35 74-109 6-40 (253)
159 TIGR03206 benzo_BadH 2-hydroxy 92.1 1.3 2.8E-05 39.9 9.5 41 76-120 3-43 (250)
160 PRK09072 short chain dehydroge 92.1 2.1 4.6E-05 39.3 11.1 44 76-123 5-48 (263)
161 PRK06841 short chain dehydroge 92.0 1.1 2.5E-05 40.6 9.1 32 77-110 16-47 (255)
162 PRK07832 short chain dehydroge 92.0 1.5 3.3E-05 40.7 10.1 43 77-123 1-43 (272)
163 PRK05875 short chain dehydroge 92.0 1.8 4E-05 39.9 10.6 39 77-119 8-46 (276)
164 PRK06924 short chain dehydroge 91.9 0.9 1.9E-05 41.1 8.4 64 76-142 1-65 (251)
165 PLN02260 probable rhamnose bio 91.9 0.46 1E-05 50.6 7.4 53 77-131 381-434 (668)
166 PRK05872 short chain dehydroge 91.9 1.7 3.7E-05 41.3 10.5 45 77-125 10-54 (296)
167 cd08293 PTGR2 Prostaglandin re 91.8 2.1 4.6E-05 40.7 11.1 95 77-196 156-251 (345)
168 PRK09242 tropinone reductase; 91.8 1.7 3.7E-05 39.7 10.1 43 77-123 10-52 (257)
169 PLN02427 UDP-apiose/xylose syn 91.8 0.27 5.9E-06 48.3 5.2 35 74-109 12-46 (386)
170 PLN02572 UDP-sulfoquinovose sy 91.8 0.77 1.7E-05 47.1 8.6 32 76-109 47-78 (442)
171 PRK07109 short chain dehydroge 91.8 1.4 3E-05 43.2 10.0 63 76-142 8-74 (334)
172 PRK06483 dihydromonapterin red 91.7 1.8 3.9E-05 39.0 10.0 62 76-142 2-63 (236)
173 COG0300 DltE Short-chain dehyd 91.7 0.58 1.3E-05 45.9 7.3 50 75-128 5-54 (265)
174 TIGR01532 E4PD_g-proteo D-eryt 91.7 1.8 4E-05 43.4 11.0 109 78-197 1-119 (325)
175 PRK06124 gluconate 5-dehydroge 91.7 1.8 3.8E-05 39.5 10.0 43 76-122 11-53 (256)
176 PRK10217 dTDP-glucose 4,6-dehy 91.7 0.54 1.2E-05 45.2 7.0 33 76-110 1-33 (355)
177 PRK06197 short chain dehydroge 91.6 1.3 2.8E-05 42.0 9.5 39 77-119 17-55 (306)
178 PRK07201 short chain dehydroge 91.6 0.51 1.1E-05 49.4 7.2 47 78-124 2-48 (657)
179 PRK06198 short chain dehydroge 91.6 1.4 3E-05 40.1 9.2 31 76-108 6-37 (260)
180 cd01065 NAD_bind_Shikimate_DH 91.6 1.9 4.2E-05 36.6 9.6 47 76-126 19-65 (155)
181 PRK12745 3-ketoacyl-(acyl-carr 91.5 1.3 2.8E-05 40.1 8.9 32 76-109 2-33 (256)
182 cd08250 Mgc45594_like Mgc45594 91.5 2.1 4.7E-05 40.2 10.7 95 76-196 140-234 (329)
183 PRK05650 short chain dehydroge 91.5 2 4.3E-05 39.8 10.2 43 77-123 1-43 (270)
184 PRK08642 fabG 3-ketoacyl-(acyl 91.5 1.3 2.8E-05 39.9 8.8 64 77-143 6-70 (253)
185 TIGR03589 PseB UDP-N-acetylglu 91.4 1.2 2.6E-05 43.1 9.2 33 77-109 5-37 (324)
186 PRK12429 3-hydroxybutyrate deh 91.4 2.3 5E-05 38.3 10.4 63 77-143 5-71 (258)
187 PRK07097 gluconate 5-dehydroge 91.4 1.9 4.1E-05 39.8 10.0 64 76-143 10-77 (265)
188 TIGR02415 23BDH acetoin reduct 91.4 1.8 4E-05 39.1 9.7 31 77-109 1-31 (254)
189 PRK08085 gluconate 5-dehydroge 91.3 2 4.4E-05 39.1 10.0 45 76-124 9-53 (254)
190 TIGR01921 DAP-DH diaminopimela 91.3 1.1 2.5E-05 45.1 9.1 40 76-117 3-42 (324)
191 PRK12938 acetyacetyl-CoA reduc 91.3 2.4 5.2E-05 38.2 10.4 65 76-143 3-71 (246)
192 PRK12384 sorbitol-6-phosphate 91.2 2.4 5.1E-05 38.7 10.4 31 77-109 3-33 (259)
193 TIGR01746 Thioester-redct thio 91.2 0.55 1.2E-05 44.2 6.4 36 78-113 1-36 (367)
194 PRK08340 glucose-1-dehydrogena 91.2 2.3 4.9E-05 39.1 10.3 44 77-124 1-44 (259)
195 PRK07074 short chain dehydroge 91.2 2.4 5.3E-05 38.6 10.4 43 77-123 3-45 (257)
196 PLN02253 xanthoxin dehydrogena 91.1 2.3 4.9E-05 39.5 10.3 45 76-124 18-62 (280)
197 cd08239 THR_DH_like L-threonin 91.1 2.4 5.1E-05 40.5 10.6 94 77-196 165-259 (339)
198 PRK05854 short chain dehydroge 91.1 1.7 3.7E-05 41.9 9.7 41 76-120 14-54 (313)
199 PLN02503 fatty acyl-CoA reduct 91.1 1.5 3.3E-05 47.5 10.3 42 72-113 115-157 (605)
200 PRK12937 short chain dehydroge 91.0 3.1 6.8E-05 37.3 10.8 65 76-143 5-73 (245)
201 PRK05993 short chain dehydroge 91.0 2.3 5.1E-05 39.7 10.3 41 76-120 4-44 (277)
202 TIGR03201 dearomat_had 6-hydro 91.0 3 6.6E-05 40.4 11.4 104 77-198 168-271 (349)
203 PRK12746 short chain dehydroge 91.0 1.7 3.7E-05 39.4 9.2 45 77-124 7-51 (254)
204 PRK06701 short chain dehydroge 91.0 2.9 6.4E-05 39.8 11.1 64 77-142 47-113 (290)
205 PRK07666 fabG 3-ketoacyl-(acyl 90.9 2.6 5.5E-05 38.0 10.2 44 76-123 7-50 (239)
206 TIGR01963 PHB_DH 3-hydroxybuty 90.9 1 2.2E-05 40.5 7.6 63 77-143 2-68 (255)
207 PRK06139 short chain dehydroge 90.9 1.4 3E-05 43.3 9.1 63 76-142 7-73 (330)
208 TIGR00978 asd_EA aspartate-sem 90.9 0.31 6.8E-06 48.4 4.6 33 78-111 2-34 (341)
209 PLN02725 GDP-4-keto-6-deoxyman 90.9 0.42 9.1E-06 44.5 5.2 50 80-131 1-55 (306)
210 PRK09291 short chain dehydroge 90.9 0.95 2.1E-05 41.0 7.4 49 77-127 3-52 (257)
211 PRK07775 short chain dehydroge 90.8 2.7 5.8E-05 39.3 10.5 42 76-121 10-51 (274)
212 PF00106 adh_short: short chai 90.7 2.6 5.7E-05 35.6 9.5 83 77-175 1-87 (167)
213 PRK06463 fabG 3-ketoacyl-(acyl 90.7 2.8 6.1E-05 38.3 10.4 38 77-117 8-45 (255)
214 KOG1502 Flavonol reductase/cin 90.7 1 2.3E-05 45.6 8.1 69 75-145 5-77 (327)
215 PRK08862 short chain dehydroge 90.6 2.4 5.1E-05 39.1 9.9 62 77-142 6-71 (227)
216 PRK05786 fabG 3-ketoacyl-(acyl 90.6 2.5 5.3E-05 37.9 9.7 43 76-122 5-47 (238)
217 TIGR00639 PurN phosphoribosylg 90.6 5.3 0.00011 37.1 12.1 116 77-193 1-129 (190)
218 PRK08213 gluconate 5-dehydroge 90.6 2.6 5.7E-05 38.5 10.0 41 77-121 13-53 (259)
219 PRK06077 fabG 3-ketoacyl-(acyl 90.5 2.3 4.9E-05 38.4 9.4 40 76-118 6-45 (252)
220 PRK07576 short chain dehydroge 90.4 2.7 5.8E-05 39.0 10.1 44 76-123 9-52 (264)
221 PRK08017 oxidoreductase; Provi 90.3 1.6 3.5E-05 39.5 8.4 60 77-142 3-62 (256)
222 PRK08339 short chain dehydroge 90.3 3.1 6.8E-05 38.7 10.5 44 76-123 8-51 (263)
223 cd08243 quinone_oxidoreductase 90.3 2.6 5.6E-05 38.9 9.8 93 76-196 143-235 (320)
224 PLN02662 cinnamyl-alcohol dehy 90.2 0.4 8.6E-06 45.2 4.5 33 76-110 4-36 (322)
225 cd08295 double_bond_reductase_ 90.1 3 6.6E-05 39.9 10.5 94 77-196 153-248 (338)
226 PLN00016 RNA-binding protein; 90.1 1.2 2.7E-05 43.9 8.0 36 75-112 51-90 (378)
227 smart00859 Semialdhyde_dh Semi 90.1 0.51 1.1E-05 39.3 4.6 33 78-111 1-33 (122)
228 PLN02260 probable rhamnose bio 90.0 0.39 8.5E-06 51.1 4.8 36 75-110 5-40 (668)
229 TIGR03649 ergot_EASG ergot alk 90.0 0.36 7.8E-06 45.1 3.9 32 78-111 1-32 (285)
230 PLN02653 GDP-mannose 4,6-dehyd 90.0 1 2.2E-05 43.3 7.1 32 77-110 7-38 (340)
231 PLN02986 cinnamyl-alcohol dehy 90.0 1.6 3.5E-05 41.5 8.4 33 76-110 5-37 (322)
232 PRK01438 murD UDP-N-acetylmura 90.0 2.7 5.9E-05 43.0 10.6 31 76-109 16-46 (480)
233 PRK08177 short chain dehydroge 89.9 0.86 1.9E-05 41.0 6.2 33 76-110 1-33 (225)
234 PLN03154 putative allyl alcoho 89.9 3.3 7.2E-05 40.5 10.8 96 77-196 160-255 (348)
235 TIGR01777 yfcH conserved hypot 89.8 0.34 7.3E-06 44.6 3.6 30 79-110 1-30 (292)
236 TIGR02622 CDP_4_6_dhtase CDP-g 89.7 2.1 4.6E-05 41.4 9.2 32 77-110 5-36 (349)
237 PRK12824 acetoacetyl-CoA reduc 89.7 3.8 8.2E-05 36.6 10.2 43 76-121 2-44 (245)
238 PRK07831 short chain dehydroge 89.7 4.2 9.2E-05 37.3 10.7 41 76-120 17-58 (262)
239 PRK07023 short chain dehydroge 89.6 0.47 1E-05 43.0 4.3 34 76-111 1-34 (243)
240 cd08289 MDR_yhfp_like Yhfp put 89.6 4 8.8E-05 38.2 10.7 94 76-196 147-240 (326)
241 TIGR01829 AcAcCoA_reduct aceto 89.6 3.8 8.2E-05 36.6 10.1 40 77-119 1-40 (242)
242 PRK06114 short chain dehydroge 89.6 4.7 0.0001 37.0 10.9 49 77-127 9-59 (254)
243 cd08274 MDR9 Medium chain dehy 89.6 3.3 7.1E-05 39.3 10.2 93 76-196 178-270 (350)
244 PRK08251 short chain dehydroge 89.6 3.8 8.3E-05 37.0 10.2 40 77-120 3-42 (248)
245 PLN02214 cinnamoyl-CoA reducta 89.6 1.9 4.1E-05 42.1 8.7 33 76-110 10-42 (342)
246 PRK07062 short chain dehydroge 89.5 3.1 6.7E-05 38.2 9.6 42 76-121 8-49 (265)
247 PRK06113 7-alpha-hydroxysteroi 89.5 3.7 8E-05 37.5 10.1 32 76-109 11-42 (255)
248 PRK08945 putative oxoacyl-(acy 89.4 1.4 3.1E-05 39.9 7.4 32 76-109 12-43 (247)
249 PLN02896 cinnamyl-alcohol dehy 89.4 2 4.4E-05 41.7 8.7 32 76-109 10-41 (353)
250 PF00551 Formyl_trans_N: Formy 89.3 1.3 2.7E-05 40.1 6.8 55 77-131 1-56 (181)
251 PLN02166 dTDP-glucose 4,6-dehy 89.1 0.52 1.1E-05 48.4 4.7 33 75-109 119-151 (436)
252 COG0002 ArgC Acetylglutamate s 89.0 0.89 1.9E-05 46.5 6.1 50 76-129 2-51 (349)
253 cd05284 arabinose_DH_like D-ar 89.0 6.8 0.00015 37.2 11.8 96 76-196 168-263 (340)
254 PRK05884 short chain dehydroge 88.9 2.9 6.3E-05 38.1 8.9 60 78-142 2-61 (223)
255 PRK06179 short chain dehydroge 88.9 3 6.5E-05 38.4 9.1 38 76-117 4-41 (270)
256 PRK08217 fabG 3-ketoacyl-(acyl 88.8 4.6 9.9E-05 36.2 10.0 43 77-123 6-48 (253)
257 PRK05876 short chain dehydroge 88.8 4.3 9.3E-05 38.3 10.3 45 76-124 6-50 (275)
258 COG2201 CheB Chemotaxis respon 88.8 5.2 0.00011 41.0 11.4 107 77-203 2-108 (350)
259 PRK06598 aspartate-semialdehyd 88.8 0.51 1.1E-05 48.3 4.3 33 76-109 1-36 (369)
260 smart00822 PKS_KR This enzymat 88.7 6 0.00013 32.6 10.0 23 77-99 1-23 (180)
261 PRK14982 acyl-ACP reductase; P 88.7 0.95 2.1E-05 45.8 6.1 46 77-124 156-201 (340)
262 PRK08277 D-mannonate oxidoredu 88.6 4.4 9.4E-05 37.6 10.1 44 76-123 10-53 (278)
263 PRK10675 UDP-galactose-4-epime 88.6 6.4 0.00014 37.5 11.4 30 78-109 2-31 (338)
264 TIGR01745 asd_gamma aspartate- 88.5 0.44 9.5E-06 48.8 3.6 25 77-101 1-25 (366)
265 PRK13535 erythrose 4-phosphate 88.5 3.8 8.2E-05 41.5 10.2 112 77-198 2-122 (336)
266 TIGR01830 3oxo_ACP_reduc 3-oxo 88.5 4.6 0.0001 35.8 9.8 31 79-111 1-31 (239)
267 cd08231 MDR_TM0436_like Hypoth 88.5 4.7 0.0001 38.9 10.5 97 76-194 178-275 (361)
268 PLN02206 UDP-glucuronate decar 88.4 0.62 1.3E-05 47.9 4.7 32 76-109 119-150 (442)
269 PRK07985 oxidoreductase; Provi 88.4 3.3 7.1E-05 39.5 9.3 64 77-142 50-117 (294)
270 COG3320 Putative dehydrogenase 88.4 1.9 4.1E-05 44.6 8.1 83 77-175 1-94 (382)
271 PRK06484 short chain dehydroge 88.3 4.2 9E-05 41.5 10.5 63 76-142 5-68 (520)
272 PRK07889 enoyl-(acyl carrier p 88.3 4.2 9.2E-05 37.7 9.8 65 76-142 7-74 (256)
273 COG1088 RfbB dTDP-D-glucose 4, 88.3 2.1 4.4E-05 43.6 8.0 52 77-131 1-56 (340)
274 PRK05855 short chain dehydroge 88.2 3.8 8.3E-05 41.5 10.1 43 77-123 316-358 (582)
275 cd08259 Zn_ADH5 Alcohol dehydr 88.2 7.4 0.00016 36.3 11.3 89 76-194 163-251 (332)
276 TIGR01546 GAPDH-II_archae glyc 88.2 3.6 7.8E-05 41.7 9.8 100 79-193 1-100 (333)
277 PRK07677 short chain dehydroge 88.1 5.2 0.00011 36.5 10.1 41 77-121 2-42 (252)
278 PRK07417 arogenate dehydrogena 88.1 9.2 0.0002 36.6 12.2 29 78-109 2-30 (279)
279 KOG4777 Aspartate-semialdehyde 88.1 0.4 8.7E-06 47.9 2.9 33 77-110 4-37 (361)
280 TIGR03366 HpnZ_proposed putati 88.1 4.3 9.3E-05 38.2 9.8 92 77-195 122-214 (280)
281 PLN02650 dihydroflavonol-4-red 88.0 0.71 1.5E-05 44.7 4.6 33 76-110 5-37 (351)
282 PRK06484 short chain dehydroge 88.0 7.4 0.00016 39.7 12.0 64 75-142 268-332 (520)
283 COG1086 Predicted nucleoside-d 87.9 6.4 0.00014 42.9 11.9 157 73-237 113-294 (588)
284 PRK07792 fabG 3-ketoacyl-(acyl 87.8 3.7 8E-05 39.4 9.3 53 76-130 12-66 (306)
285 PRK08261 fabG 3-ketoacyl-(acyl 87.8 3.7 7.9E-05 41.4 9.6 51 77-129 211-261 (450)
286 PRK08125 bifunctional UDP-gluc 87.7 0.66 1.4E-05 49.7 4.6 33 77-110 316-348 (660)
287 cd08244 MDR_enoyl_red Possible 87.7 7.8 0.00017 36.1 11.2 93 76-194 143-236 (324)
288 PF02719 Polysacc_synt_2: Poly 87.7 2 4.3E-05 42.9 7.5 42 79-124 1-43 (293)
289 PRK06123 short chain dehydroge 87.6 3.8 8.3E-05 36.9 8.8 41 77-120 3-43 (248)
290 PRK07069 short chain dehydroge 87.5 4.9 0.00011 36.1 9.4 43 78-123 1-43 (251)
291 PRK06953 short chain dehydroge 87.5 5.4 0.00012 35.8 9.6 39 76-118 1-39 (222)
292 TIGR01289 LPOR light-dependent 87.5 6.7 0.00014 37.9 10.9 46 76-124 3-48 (314)
293 cd08268 MDR2 Medium chain dehy 87.4 7.4 0.00016 35.7 10.7 94 77-195 146-239 (328)
294 TIGR02825 B4_12hDH leukotriene 87.4 6.1 0.00013 37.6 10.4 94 77-196 140-234 (325)
295 TIGR02685 pter_reduc_Leis pter 87.4 5.3 0.00012 36.9 9.8 45 77-124 2-46 (267)
296 TIGR01296 asd_B aspartate-semi 87.3 0.69 1.5E-05 46.2 4.2 35 78-113 1-37 (339)
297 PRK08703 short chain dehydroge 87.3 1.5 3.3E-05 39.5 6.1 43 77-123 7-49 (239)
298 cd08292 ETR_like_2 2-enoyl thi 87.3 6.5 0.00014 36.7 10.4 95 77-196 141-235 (324)
299 PF07993 NAD_binding_4: Male s 87.2 1.2 2.5E-05 41.5 5.4 41 81-121 1-41 (249)
300 TIGR01179 galE UDP-glucose-4-e 87.2 3.7 8.1E-05 38.1 8.7 30 78-109 1-30 (328)
301 TIGR03451 mycoS_dep_FDH mycoth 87.2 5.4 0.00012 38.8 10.1 94 76-195 177-272 (358)
302 cd08249 enoyl_reductase_like e 87.1 6.8 0.00015 37.7 10.7 90 76-191 155-244 (339)
303 PRK08936 glucose-1-dehydrogena 87.0 4.9 0.00011 36.8 9.3 43 76-121 7-49 (261)
304 PLN00198 anthocyanidin reducta 86.9 0.86 1.9E-05 43.8 4.4 33 76-110 9-41 (338)
305 cd05282 ETR_like 2-enoyl thioe 86.9 15 0.00033 34.1 12.6 95 76-196 139-234 (323)
306 PRK10309 galactitol-1-phosphat 86.5 6.6 0.00014 37.8 10.2 97 76-197 161-258 (347)
307 PRK06027 purU formyltetrahydro 86.4 7.8 0.00017 38.1 10.8 134 72-212 85-237 (286)
308 PRK07791 short chain dehydroge 86.4 7.2 0.00016 36.9 10.3 32 76-109 6-37 (286)
309 cd08301 alcohol_DH_plants Plan 86.3 7.8 0.00017 37.8 10.7 92 77-192 189-281 (369)
310 cd08233 butanediol_DH_like (2R 86.3 4.9 0.00011 38.7 9.2 94 77-195 174-268 (351)
311 cd05276 p53_inducible_oxidored 86.2 12 0.00026 34.0 11.3 49 76-129 140-188 (323)
312 PRK10124 putative UDP-glucose 86.1 6 0.00013 41.2 10.3 59 76-135 143-213 (463)
313 PLN02989 cinnamyl-alcohol dehy 86.0 1.1 2.5E-05 42.5 4.7 34 75-110 4-37 (325)
314 PRK07577 short chain dehydroge 86.0 5 0.00011 35.8 8.6 31 77-109 4-34 (234)
315 PLN02775 Probable dihydrodipic 86.0 7.9 0.00017 38.7 10.6 32 77-110 12-43 (286)
316 PRK07201 short chain dehydroge 85.9 6.5 0.00014 41.3 10.6 44 76-123 371-414 (657)
317 PRK06079 enoyl-(acyl carrier p 85.9 7.7 0.00017 35.8 10.0 46 76-126 7-54 (252)
318 cd08281 liver_ADH_like1 Zinc-d 85.7 6 0.00013 38.8 9.7 94 77-196 193-287 (371)
319 cd08290 ETR 2-enoyl thioester 85.7 8.9 0.00019 36.4 10.5 99 76-194 147-246 (341)
320 TIGR03466 HpnA hopanoid-associ 85.5 1.1 2.3E-05 42.1 4.2 32 77-110 1-32 (328)
321 PRK05396 tdh L-threonine 3-deh 85.5 10 0.00022 36.2 10.9 97 77-197 165-261 (341)
322 COG0451 WcaG Nucleoside-diphos 85.5 1.2 2.7E-05 41.2 4.5 32 78-111 2-33 (314)
323 PRK06125 short chain dehydroge 85.4 4.5 9.8E-05 37.1 8.1 44 77-124 8-51 (259)
324 cd08264 Zn_ADH_like2 Alcohol d 85.3 7 0.00015 36.8 9.6 88 77-197 164-251 (325)
325 cd08230 glucose_DH Glucose deh 85.3 4.9 0.00011 39.0 8.7 91 77-195 174-265 (355)
326 PRK13011 formyltetrahydrofolat 85.1 11 0.00023 37.3 11.1 131 74-212 87-237 (286)
327 PRK12859 3-ketoacyl-(acyl-carr 85.1 7 0.00015 36.0 9.3 31 76-108 6-38 (256)
328 cd05278 FDH_like Formaldehyde 85.1 9.9 0.00022 36.0 10.6 96 77-196 169-264 (347)
329 cd08261 Zn_ADH7 Alcohol dehydr 85.0 14 0.00031 35.1 11.6 93 77-194 161-253 (337)
330 PF01073 3Beta_HSD: 3-beta hyd 85.0 2.4 5.2E-05 40.9 6.4 64 80-144 1-64 (280)
331 PRK08303 short chain dehydroge 84.9 9.8 0.00021 36.9 10.6 32 76-109 8-39 (305)
332 cd08269 Zn_ADH9 Alcohol dehydr 84.9 10 0.00022 35.1 10.4 95 76-196 130-226 (312)
333 cd05288 PGDH Prostaglandin deh 84.8 10 0.00022 35.7 10.3 94 77-196 147-241 (329)
334 PRK12747 short chain dehydroge 84.8 6.5 0.00014 35.8 8.8 43 76-121 4-46 (252)
335 cd08297 CAD3 Cinnamyl alcohol 84.7 15 0.00033 34.9 11.7 95 77-196 167-262 (341)
336 TIGR01831 fabG_rel 3-oxoacyl-( 84.6 6.7 0.00014 35.2 8.7 40 79-121 1-40 (239)
337 PLN02686 cinnamoyl-CoA reducta 84.5 5.1 0.00011 39.8 8.6 34 74-109 51-84 (367)
338 PRK11150 rfaD ADP-L-glycero-D- 84.3 1.2 2.6E-05 42.1 3.9 31 79-111 2-32 (308)
339 TIGR00655 PurU formyltetrahydr 84.2 10 0.00023 37.3 10.5 132 74-212 82-232 (280)
340 KOG2733 Uncharacterized membra 83.9 2.6 5.7E-05 43.8 6.4 92 78-193 7-110 (423)
341 cd01075 NAD_bind_Leu_Phe_Val_D 83.8 7.8 0.00017 35.8 9.0 43 77-124 29-71 (200)
342 PRK08324 short chain dehydroge 83.8 8.2 0.00018 41.8 10.5 45 77-125 423-467 (681)
343 TIGR01751 crot-CoA-red crotony 83.8 14 0.0003 36.7 11.3 113 77-195 191-306 (398)
344 PRK07856 short chain dehydroge 83.6 8.8 0.00019 35.0 9.2 32 76-109 6-37 (252)
345 PLN02780 ketoreductase/ oxidor 83.5 7.5 0.00016 38.0 9.2 44 77-124 54-97 (320)
346 PRK08306 dipicolinate synthase 83.5 8.2 0.00018 37.9 9.4 44 76-125 152-195 (296)
347 cd08235 iditol_2_DH_like L-idi 83.4 12 0.00025 35.6 10.3 96 76-196 166-262 (343)
348 TIGR02819 fdhA_non_GSH formald 83.4 12 0.00026 37.6 10.9 97 77-197 187-297 (393)
349 PRK07424 bifunctional sterol d 83.3 7.2 0.00016 40.3 9.3 42 76-121 178-219 (406)
350 PRK10754 quinone oxidoreductas 83.1 14 0.00031 34.7 10.7 91 77-192 142-232 (327)
351 TIGR03025 EPS_sugtrans exopoly 83.0 11 0.00024 38.4 10.6 60 75-135 124-198 (445)
352 PRK06720 hypothetical protein; 83.0 15 0.00032 33.1 10.2 64 76-142 16-82 (169)
353 PRK12748 3-ketoacyl-(acyl-carr 82.9 13 0.00029 33.9 10.1 31 77-109 6-38 (256)
354 cd08258 Zn_ADH4 Alcohol dehydr 82.8 13 0.00028 35.4 10.3 96 77-196 166-261 (306)
355 PRK13301 putative L-aspartate 82.8 7.6 0.00016 38.5 8.9 138 77-254 3-149 (267)
356 cd05285 sorbitol_DH Sorbitol d 82.8 14 0.00029 35.5 10.5 97 77-195 164-261 (343)
357 PRK07634 pyrroline-5-carboxyla 82.5 17 0.00037 33.4 10.8 49 76-125 4-53 (245)
358 cd08246 crotonyl_coA_red croto 82.4 14 0.0003 36.4 10.7 111 77-195 195-311 (393)
359 KOG2741 Dimeric dihydrodiol de 82.4 11 0.00023 38.9 10.0 153 76-257 6-166 (351)
360 PRK06997 enoyl-(acyl carrier p 82.4 11 0.00023 35.2 9.4 65 77-143 7-74 (260)
361 PLN02514 cinnamyl-alcohol dehy 82.3 14 0.0003 36.2 10.6 91 77-196 182-272 (357)
362 cd08256 Zn_ADH2 Alcohol dehydr 82.1 15 0.00033 35.3 10.6 93 77-195 176-270 (350)
363 PLN02996 fatty acyl-CoA reduct 82.1 1.9 4E-05 45.1 4.7 37 74-110 9-46 (491)
364 cd08296 CAD_like Cinnamyl alco 82.0 15 0.00032 35.2 10.5 90 77-194 165-254 (333)
365 PRK07370 enoyl-(acyl carrier p 81.8 13 0.00028 34.5 9.7 65 77-143 7-77 (258)
366 cd08278 benzyl_alcohol_DH Benz 81.6 17 0.00037 35.6 10.9 93 77-195 188-281 (365)
367 PRK07533 enoyl-(acyl carrier p 81.5 17 0.00037 33.7 10.3 64 77-143 11-78 (258)
368 PLN03096 glyceraldehyde-3-phos 81.4 13 0.00027 38.8 10.3 112 77-198 61-181 (395)
369 cd08241 QOR1 Quinone oxidoredu 81.4 14 0.00031 33.6 9.7 93 77-194 141-233 (323)
370 cd08300 alcohol_DH_class_III c 81.3 17 0.00037 35.6 10.8 92 76-191 187-279 (368)
371 TIGR03443 alpha_am_amid L-amin 81.3 4 8.6E-05 46.8 7.3 40 74-113 969-1010(1389)
372 cd08291 ETR_like_1 2-enoyl thi 81.1 17 0.00037 34.5 10.4 90 77-192 144-235 (324)
373 PRK05599 hypothetical protein; 80.9 16 0.00035 33.6 9.9 43 77-124 1-43 (246)
374 cd05280 MDR_yhdh_yhfp Yhdh and 80.8 23 0.0005 33.0 11.0 91 77-194 148-238 (325)
375 cd01336 MDH_cytoplasmic_cytoso 80.8 1.5 3.2E-05 43.7 3.2 44 76-119 2-50 (325)
376 PLN02586 probable cinnamyl alc 80.7 10 0.00022 37.3 9.1 91 77-196 185-275 (360)
377 TIGR02632 RhaD_aldol-ADH rhamn 80.7 11 0.00024 41.1 10.0 44 77-124 415-458 (676)
378 TIGR02130 dapB_plant dihydrodi 80.6 12 0.00027 37.1 9.5 29 78-108 2-30 (275)
379 COG3268 Uncharacterized conser 80.5 13 0.00028 38.5 9.7 154 76-257 6-175 (382)
380 cd08252 AL_MDR Arginate lyase 80.4 18 0.00039 34.0 10.3 97 76-197 150-246 (336)
381 PF07287 DUF1446: Protein of u 80.4 7.2 0.00016 40.0 8.0 101 91-200 62-168 (362)
382 PRK08159 enoyl-(acyl carrier p 80.3 17 0.00037 34.2 10.1 64 76-142 10-77 (272)
383 cd08284 FDH_like_2 Glutathione 80.2 17 0.00036 34.5 10.1 92 77-194 169-261 (344)
384 PRK05472 redox-sensing transcr 80.1 11 0.00025 34.7 8.7 62 72-134 80-155 (213)
385 PRK10084 dTDP-glucose 4,6 dehy 80.0 11 0.00023 36.4 8.7 30 78-108 2-31 (352)
386 PRK08309 short chain dehydroge 80.0 39 0.00086 30.7 12.0 62 78-144 2-66 (177)
387 TIGR02823 oxido_YhdH putative 79.8 21 0.00045 33.5 10.4 91 78-196 148-238 (323)
388 PTZ00354 alcohol dehydrogenase 79.7 26 0.00056 32.7 11.0 97 77-197 142-238 (334)
389 cd05188 MDR Medium chain reduc 79.6 20 0.00044 31.9 9.9 95 76-196 135-229 (271)
390 PRK13771 putative alcohol dehy 79.4 17 0.00036 34.4 9.8 90 76-196 163-252 (334)
391 PLN02178 cinnamyl-alcohol dehy 79.3 18 0.00038 36.2 10.3 91 77-196 180-270 (375)
392 TIGR02818 adh_III_F_hyde S-(hy 79.2 23 0.00051 34.8 11.0 91 77-191 187-278 (368)
393 PRK06940 short chain dehydroge 79.2 18 0.00038 34.1 9.8 38 77-120 3-40 (275)
394 cd08285 NADP_ADH NADP(H)-depen 79.1 21 0.00046 34.3 10.5 96 76-196 167-263 (351)
395 PRK08690 enoyl-(acyl carrier p 79.0 15 0.00032 34.2 9.1 66 76-143 6-74 (261)
396 PRK11199 tyrA bifunctional cho 79.0 30 0.00065 35.0 11.9 135 75-228 97-244 (374)
397 TIGR02197 heptose_epim ADP-L-g 78.8 3.9 8.4E-05 38.2 5.2 30 79-109 1-30 (314)
398 PLN02358 glyceraldehyde-3-phos 78.7 15 0.00032 37.4 9.6 114 76-199 5-127 (338)
399 PF13380 CoA_binding_2: CoA bi 78.7 5.2 0.00011 34.0 5.5 30 77-108 1-33 (116)
400 PRK13656 trans-2-enoyl-CoA red 78.6 21 0.00045 37.3 10.8 105 73-196 38-170 (398)
401 PF02310 B12-binding: B12 bind 78.6 14 0.00029 30.2 7.8 87 87-175 14-111 (121)
402 PRK08264 short chain dehydroge 78.4 9.9 0.00022 34.1 7.6 40 76-119 6-46 (238)
403 PF01488 Shikimate_DH: Shikima 78.2 13 0.00029 31.9 8.0 46 76-125 12-57 (135)
404 TIGR03023 WcaJ_sugtrans Undeca 78.2 19 0.00042 36.7 10.4 59 76-135 128-201 (451)
405 PLN02740 Alcohol dehydrogenase 77.9 19 0.00041 35.6 9.9 91 77-191 200-291 (381)
406 smart00829 PKS_ER Enoylreducta 77.7 28 0.00062 31.0 10.2 45 77-126 106-150 (288)
407 TIGR02817 adh_fam_1 zinc-bindi 77.5 33 0.00072 32.3 11.1 95 77-196 150-244 (336)
408 TIGR02782 TrbB_P P-type conjug 77.4 12 0.00026 36.8 8.4 56 76-132 132-211 (299)
409 PRK08220 2,3-dihydroxybenzoate 77.4 4.6 0.0001 36.5 5.1 32 77-110 9-40 (252)
410 PRK08955 glyceraldehyde-3-phos 77.3 15 0.00032 37.3 9.1 108 77-197 3-118 (334)
411 cd08253 zeta_crystallin Zeta-c 77.2 26 0.00056 32.0 10.0 49 76-129 145-193 (325)
412 PRK07578 short chain dehydroge 77.1 9.5 0.00021 33.6 6.9 29 78-109 2-30 (199)
413 cd08260 Zn_ADH6 Alcohol dehydr 77.1 32 0.00069 32.9 11.0 95 76-195 166-260 (345)
414 cd06578 HemD Uroporphyrinogen- 76.7 20 0.00043 32.0 9.0 141 87-233 83-237 (239)
415 PRK06545 prephenate dehydrogen 76.3 61 0.0013 32.5 13.1 39 77-118 1-39 (359)
416 cd02072 Glm_B12_BD B12 binding 76.1 17 0.00037 32.2 8.1 52 81-133 3-58 (128)
417 PRK09424 pntA NAD(P) transhydr 76.0 29 0.00064 37.2 11.3 51 76-132 165-215 (509)
418 PRK06603 enoyl-(acyl carrier p 76.0 30 0.00064 32.2 10.2 64 76-143 8-76 (260)
419 TIGR00715 precor6x_red precorr 75.9 6.4 0.00014 38.2 5.9 35 77-114 1-35 (256)
420 PRK08415 enoyl-(acyl carrier p 75.8 32 0.00069 32.6 10.5 63 77-143 6-73 (274)
421 PLN02256 arogenate dehydrogena 75.7 34 0.00075 33.8 11.1 33 75-110 35-67 (304)
422 cd08254 hydroxyacyl_CoA_DH 6-h 75.7 38 0.00082 31.7 10.9 93 77-195 167-259 (338)
423 PRK09310 aroDE bifunctional 3- 75.5 23 0.00049 37.2 10.2 116 76-236 332-448 (477)
424 cd08288 MDR_yhdh Yhdh putative 75.3 39 0.00085 31.6 10.9 50 76-130 147-196 (324)
425 TIGR01757 Malate-DH_plant mala 75.1 5.9 0.00013 40.9 5.8 56 69-125 37-98 (387)
426 COG0057 GapA Glyceraldehyde-3- 75.1 18 0.00039 37.0 9.1 113 77-197 2-120 (335)
427 PRK06505 enoyl-(acyl carrier p 75.1 28 0.00061 32.8 9.9 63 77-143 8-75 (271)
428 PRK08419 lipid A biosynthesis 74.7 23 0.00049 34.3 9.3 103 104-226 114-231 (298)
429 PRK01222 N-(5'-phosphoribosyl) 74.4 53 0.0011 30.8 11.4 114 90-208 42-163 (210)
430 KOG1203 Predicted dehydrogenas 74.4 7.7 0.00017 40.6 6.4 38 71-110 74-111 (411)
431 TIGR03022 WbaP_sugtrans Undeca 74.3 24 0.00052 36.1 9.9 58 75-134 124-197 (456)
432 PRK09189 uroporphyrinogen-III 74.2 54 0.0012 30.4 11.4 145 87-236 80-238 (240)
433 cd08272 MDR6 Medium chain dehy 73.8 46 0.001 30.5 10.8 92 76-194 145-236 (326)
434 PRK13010 purU formyltetrahydro 73.7 35 0.00076 33.8 10.5 132 74-212 91-241 (289)
435 cd08263 Zn_ADH10 Alcohol dehyd 73.6 38 0.00083 32.9 10.7 97 77-198 189-287 (367)
436 PLN02827 Alcohol dehydrogenase 73.5 30 0.00066 34.3 10.2 92 77-192 195-287 (378)
437 cd05213 NAD_bind_Glutamyl_tRNA 73.5 25 0.00054 34.5 9.4 47 76-126 178-224 (311)
438 cd02071 MM_CoA_mut_B12_BD meth 73.4 42 0.0009 28.4 9.6 45 88-133 14-58 (122)
439 TIGR01202 bchC 2-desacetyl-2-h 73.4 16 0.00035 35.0 8.0 83 77-196 146-228 (308)
440 TIGR01019 sucCoAalpha succinyl 73.3 31 0.00068 34.2 10.1 28 75-102 5-32 (286)
441 cd01338 MDH_choloroplast_like 73.1 3.3 7.2E-05 41.2 3.3 50 75-124 1-55 (322)
442 TIGR00518 alaDH alanine dehydr 73.0 21 0.00046 36.2 9.1 45 76-125 167-211 (370)
443 PRK06849 hypothetical protein; 72.9 39 0.00085 33.7 10.8 36 75-112 3-38 (389)
444 KOG1221 Acyl-CoA reductase [Li 72.8 14 0.0003 39.4 7.8 36 75-110 11-47 (467)
445 PRK05086 malate dehydrogenase; 72.7 5.3 0.00011 39.5 4.6 33 77-109 1-34 (312)
446 PRK07984 enoyl-(acyl carrier p 72.7 38 0.00082 31.9 10.1 30 76-107 6-37 (262)
447 PRK13900 type IV secretion sys 72.2 19 0.00041 36.2 8.4 69 75-144 159-257 (332)
448 COG1560 HtrB Lauroyl/myristoyl 71.7 34 0.00074 34.3 10.0 117 88-225 110-241 (308)
449 TIGR01501 MthylAspMutase methy 71.4 37 0.00081 30.2 9.2 53 80-133 4-60 (134)
450 PRK08594 enoyl-(acyl carrier p 71.4 45 0.00098 31.0 10.2 48 76-125 7-57 (257)
451 TIGR01915 npdG NADPH-dependent 71.2 11 0.00024 34.8 6.1 42 78-123 2-43 (219)
452 cd08286 FDH_like_ADH2 formalde 71.1 42 0.0009 32.1 10.2 93 77-193 168-260 (345)
453 PRK09009 C factor cell-cell si 70.9 6.6 0.00014 35.3 4.4 32 77-108 1-32 (235)
454 cd08262 Zn_ADH8 Alcohol dehydr 70.5 61 0.0013 30.8 11.1 96 77-194 163-259 (341)
455 cd08277 liver_alcohol_DH_like 70.5 31 0.00067 33.8 9.3 91 77-191 186-277 (365)
456 cd08248 RTN4I1 Human Reticulon 70.5 45 0.00097 31.7 10.2 91 76-195 163-253 (350)
457 PF06506 PrpR_N: Propionate ca 70.4 16 0.00035 32.8 6.8 71 156-236 91-161 (176)
458 TIGR01500 sepiapter_red sepiap 70.2 19 0.00042 33.0 7.5 45 78-124 2-48 (256)
459 cd05289 MDR_like_2 alcohol deh 70.1 41 0.00089 30.5 9.4 89 76-194 145-233 (309)
460 PLN02702 L-idonate 5-dehydroge 69.9 57 0.0012 31.7 11.0 97 77-195 183-281 (364)
461 PRK06523 short chain dehydroge 69.9 6.6 0.00014 35.8 4.3 31 77-109 10-40 (260)
462 COG1064 AdhP Zn-dependent alco 69.7 45 0.00098 34.1 10.5 88 77-196 168-256 (339)
463 TIGR03013 EpsB_2 sugar transfe 69.7 43 0.00093 34.5 10.5 59 76-135 124-196 (442)
464 KOG2862 Alanine-glyoxylate ami 69.7 25 0.00055 36.3 8.6 58 76-133 91-150 (385)
465 PRK08958 sdhA succinate dehydr 69.5 3.6 7.8E-05 44.0 2.8 39 168-207 7-45 (588)
466 PRK07121 hypothetical protein; 69.5 3.8 8.2E-05 42.2 2.9 36 167-203 19-54 (492)
467 PRK02261 methylaspartate mutas 69.4 48 0.001 29.2 9.4 53 80-133 6-62 (137)
468 cd02070 corrinoid_protein_B12- 69.2 35 0.00076 31.4 8.9 92 80-172 85-188 (201)
469 PRK07041 short chain dehydroge 69.1 26 0.00056 31.2 7.8 41 80-124 1-41 (230)
470 cd08242 MDR_like Medium chain 68.8 39 0.00085 31.8 9.3 86 77-196 157-242 (319)
471 cd05281 TDH Threonine dehydrog 68.7 66 0.0014 30.8 11.0 94 76-194 164-257 (341)
472 PRK12320 hypothetical protein; 68.6 6.4 0.00014 43.6 4.5 30 78-109 2-31 (699)
473 cd08240 6_hydroxyhexanoate_dh_ 68.6 66 0.0014 30.8 11.0 96 76-197 176-272 (350)
474 PRK08618 ornithine cyclodeamin 68.5 38 0.00083 33.5 9.6 33 160-196 186-218 (325)
475 cd08298 CAD2 Cinnamyl alcohol 68.5 45 0.00097 31.4 9.7 87 77-198 169-255 (329)
476 PF00107 ADH_zinc_N: Zinc-bind 68.2 23 0.00051 28.9 6.8 84 88-196 2-86 (130)
477 cd08275 MDR3 Medium chain dehy 68.0 54 0.0012 30.5 9.9 90 77-192 140-229 (337)
478 cd05291 HicDH_like L-2-hydroxy 67.9 38 0.00082 33.1 9.3 44 77-123 1-44 (306)
479 PRK07573 sdhA succinate dehydr 67.8 4.4 9.6E-05 43.8 3.1 43 165-208 32-74 (640)
480 cd08282 PFDH_like Pseudomonas 67.7 64 0.0014 31.7 10.9 94 77-197 178-283 (375)
481 PTZ00139 Succinate dehydrogena 67.6 4.2 9E-05 43.8 2.8 39 167-206 28-66 (617)
482 cd01076 NAD_bind_1_Glu_DH NAD( 67.4 16 0.00036 34.6 6.5 47 76-125 31-86 (227)
483 PRK12367 short chain dehydroge 67.3 26 0.00056 32.9 7.7 31 77-109 15-45 (245)
484 PF03807 F420_oxidored: NADP o 67.2 19 0.00042 28.2 5.9 50 78-129 1-51 (96)
485 KOG0455 Homoserine dehydrogena 67.2 20 0.00043 36.2 7.1 156 78-252 5-178 (364)
486 cd02067 B12-binding B12 bindin 67.1 33 0.00071 28.4 7.5 45 88-133 14-58 (119)
487 PRK06217 hypothetical protein; 66.9 3.8 8.2E-05 36.6 2.0 19 76-95 1-19 (183)
488 PRK06988 putative formyltransf 66.5 65 0.0014 32.0 10.7 131 76-212 2-149 (312)
489 KOG1371 UDP-glucose 4-epimeras 66.3 68 0.0015 33.1 10.9 157 76-249 2-166 (343)
490 TIGR00692 tdh L-threonine 3-de 66.2 56 0.0012 31.3 10.0 92 77-194 163-256 (340)
491 cd08279 Zn_ADH_class_III Class 66.2 48 0.001 32.3 9.6 95 77-196 184-279 (363)
492 TIGR01035 hemA glutamyl-tRNA r 66.0 31 0.00066 35.5 8.6 46 77-126 181-226 (417)
493 cd08265 Zn_ADH3 Alcohol dehydr 65.9 68 0.0015 31.7 10.7 98 77-196 205-304 (384)
494 PRK09496 trkA potassium transp 65.9 52 0.0011 33.1 10.0 61 76-141 231-291 (453)
495 PRK06263 sdhA succinate dehydr 65.5 4.6 0.0001 42.4 2.6 42 167-210 6-47 (543)
496 cd08251 polyketide_synthase po 65.4 92 0.002 28.2 10.7 90 77-191 122-211 (303)
497 PRK08118 topology modulation p 65.3 4.1 9E-05 36.4 1.9 19 76-95 1-19 (167)
498 PRK06452 sdhA succinate dehydr 65.2 5.1 0.00011 42.6 2.9 38 167-205 4-41 (566)
499 smart00382 AAA ATPases associa 64.5 25 0.00054 27.2 6.0 35 77-112 3-40 (148)
500 PF00625 Guanylate_kin: Guanyl 64.5 9.3 0.0002 34.0 4.0 32 76-108 2-35 (183)
No 1
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=100.00 E-value=3.4e-139 Score=1052.91 Aligned_cols=342 Identities=83% Similarity=1.329 Sum_probs=325.0
Q ss_pred CCCCCCccccccccccccccceeEee-----cCCCCCCCCCccccccccCCCCCCeeEEEEecCChHhHHHHHHHHhCCC
Q 017567 27 PKLSGGFPLKRKDNATATFGRIVQCS-----AQGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHED 101 (369)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~p~~~~~~~~~~~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd 101 (369)
++++++...++++. ....++|++|+ .+.|+++|||++..++..+.|..+|||+|||||||||+||||||++|||
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd 82 (454)
T PLN02696 4 PKLPGGFTTKRSSS-RQSRGRRAKCSVAGWSQNSPPPAWPGRAVVEPGRKGWDGPKPISLLGSTGSIGTQTLDIVAENPD 82 (454)
T ss_pred ccCCCcceeccccc-cccccccccccccccccCCCCccCccccccCCcccccCCccEEEEecCCcHhhHHHHHHHHhCcc
Confidence 58899999999998 77888999999 4458999999998778789999999999999999999999999999999
Q ss_pred ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCccC
Q 017567 102 KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAG 181 (369)
Q Consensus 102 ~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aG 181 (369)
+|+|++|++|+|+++|++|+++|+|++|++.|++.+.+|++.|.+.+.+++++.|++|++++++.+++|+||+||||++|
T Consensus 83 ~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aG 162 (454)
T PLN02696 83 KFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAG 162 (454)
T ss_pred ccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccc
Confidence 99999999999999999999999999999999999999999885422357999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHhhcCCCCCccceEEEeecCCCCCCCChh
Q 017567 182 LKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVE 261 (369)
Q Consensus 182 L~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e 261 (369)
|.||++||++||+|||||||||||||++|+++++++|++|+|||||||||||||+|+++++|+||||||||||||+|++|
T Consensus 163 L~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e 242 (454)
T PLN02696 163 LKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVE 242 (454)
T ss_pred hHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEeecchhhHHHHHHccCCCccCccEEEEECCchhccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999877789999999999999999999
Q ss_pred hhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhhhhhhcCCCCCceeEEEcCCcceeeeEEeccCcEEEecCCCCc
Q 017567 262 KLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSIIHSMVETQDSSVIGQLGWPDM 341 (369)
Q Consensus 262 ~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvIHPqSiIHsmVef~DGSv~Aql~~PDM 341 (369)
+|++||++|||+||||+||+||||||||||||||||||||||||+|||+|||||||||||||||||.|||++||||+|||
T Consensus 243 ~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vvIHPqSiIHsmVef~DGS~~Aql~~pDM 322 (454)
T PLN02696 243 KLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGADYDDIDIVIHPQSIIHSMVETQDSSVLAQLGWPDM 322 (454)
T ss_pred HHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECcCCeeeEEEEEcCCcEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhccCCCCccccCCCCCCCCCCCC
Q 017567 342 RLPIIYTMSWPERIYCSELTWPRLDLSK 369 (369)
Q Consensus 342 rlPI~yAL~yP~R~~~~~~~~~~ldl~~ 369 (369)
|+||+|||+||+|.++++..+++|||.+
T Consensus 323 rlPI~yAL~yP~R~~~~~~~~~~ldl~~ 350 (454)
T PLN02696 323 RLPILYTMSWPDRVPCSEITWPRLDLCK 350 (454)
T ss_pred HHHHHHHcCCccccccccCCCCCcCccc
Confidence 9999999999999974345688898863
No 2
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=100.00 E-value=7.8e-134 Score=988.93 Aligned_cols=287 Identities=57% Similarity=0.908 Sum_probs=280.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
+|+|+|||||||||+|||||+++|||+|+|+||++|+|+++|++||++|+|++|++.|+..+++++..+. +++|+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~----~~~v~~ 76 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLP----GTEVLV 76 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhcc----CceEEe
Confidence 5899999999999999999999999999999999999999999999999999999999999999998875 489999
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHhh
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~L 235 (369)
|++|++++++.+++|+||+||||++||.||++|+++||+||||||||||+||+|+++.+|++|++|+|||||||||||||
T Consensus 77 G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L 156 (385)
T COG0743 77 GEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCL 156 (385)
T ss_pred cHHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhhhhhhcCCCCCceeEEE
Q 017567 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (369)
Q Consensus 236 ~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvI 315 (369)
+|+..++|+||||||||||||+|++|+|.+|||+|||+||||+||+||||||||||||||||||||||||+|||+|||||
T Consensus 157 ~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIEA~~LF~~~~~~IeVvI 236 (385)
T COG0743 157 QGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 236 (385)
T ss_pred CccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHHHHHHhCCCHHHeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeeEEeccCcEEEecCCCCchhHHHhccCCCCccccCCCCCCCCCCCC
Q 017567 316 HPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSK 369 (369)
Q Consensus 316 HPqSiIHsmVef~DGSv~Aql~~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~ 369 (369)
||||||||||||.|||++||||+||||+||+|||+||+|.+ ..+++|||.+
T Consensus 237 HPQSiIHsmV~~~DGSviAqlg~pDMr~PI~yAl~~P~R~~---~~~~~ldf~~ 287 (385)
T COG0743 237 HPQSIIHSMVEYVDGSVIAQLGPPDMRTPISYALAYPERVP---SAVEPLDFTK 287 (385)
T ss_pred cccchheeeEEeccCCEEEecCCcchhhHHHHHhcCCcccc---cCccccchhh
Confidence 99999999999999999999999999999999999999995 4778899863
No 3
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=100.00 E-value=9e-133 Score=990.41 Aligned_cols=290 Identities=56% Similarity=0.875 Sum_probs=278.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
||+|+|||||||||+|||||+++|||+|+|+||+||+|+++|.+|+++|+|++|++.|+..+.++++.+.+.+.++++++
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999998742234589999
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHhh
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~L 235 (369)
|++|++++++.+++|+||+||||++||.||++||++||+|||||||||||||++|++++++++++|+|||||||||||||
T Consensus 81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKEsLV~aG~li~~~a~~~~~~I~PVDSEHsAIfQ~L 160 (389)
T TIGR00243 81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANKESLVTAGHLFLDAVKKYGVQLLPVDSEHNAIFQSL 160 (389)
T ss_pred CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhHHHhhHHHHHHHHHHcCCeEEeecchHhHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhhhhhhcCCCCCceeEE
Q 017567 236 Q-GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEII 314 (369)
Q Consensus 236 ~-g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~Ievv 314 (369)
+ |++.++|++|||||||||||+|++|+|++|||+|||+||||+||+||||||||||||||||||||||||+|||+||||
T Consensus 161 ~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vv 240 (389)
T TIGR00243 161 QHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYIEARWLFGASAEQIDVL 240 (389)
T ss_pred ccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEE
Confidence 9 876667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcceeeeEEeccCcEEEecCCCCchhHHHhccCCCCccccCCCCCCCCCCC
Q 017567 315 IHPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLS 368 (369)
Q Consensus 315 IHPqSiIHsmVef~DGSv~Aql~~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~ 368 (369)
|||||||||||||.|||++||||.||||+||+|||+||+|.+ ...++|||.
T Consensus 241 IHpqSiIHsmVef~DGSv~aql~~pDMrlPI~yAL~yP~R~~---~~~~~ldl~ 291 (389)
T TIGR00243 241 IHPQSIIHSMVEFQDGSVIAQLGEPDMRLPIAYAMAWPNRVN---SGVKPLDLC 291 (389)
T ss_pred ECCCCceeEEEEEcCccEEEEeCCCCcHHHHHHHcCCccccc---CCCCCcCcc
Confidence 999999999999999999999999999999999999999995 357788876
No 4
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=2.9e-131 Score=978.65 Aligned_cols=283 Identities=51% Similarity=0.863 Sum_probs=274.1
Q ss_pred EEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHHHH
Q 017567 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV 160 (369)
Q Consensus 81 ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~gl 160 (369)
|||||||||+||||||++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.+.+|++.+.+ .++++++|++|+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~--~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSA--NTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccC--CCcEEEECHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999988742 458999999999
Q ss_pred HHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHhhcCCCC
Q 017567 161 IEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE 240 (369)
Q Consensus 161 ~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~L~g~~~ 240 (369)
+++++.+++|+||+||||++||.||++||++||+|||||||||||||++|++++++++++|+|||||||||||||+|++.
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~iiPVDSEHsAIfQ~L~~~~~ 158 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLIPVDSEHSAIFQCLNGENN 158 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEEeechhHHHHHHHccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhhhhhhcCCCCCceeEEEcCCcc
Q 017567 241 GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSI 320 (369)
Q Consensus 241 ~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvIHPqSi 320 (369)
++|++|||||||||||+|++|+|++|||+|||+||||+||+||||||||||||||||||||||||+||||||||||||||
T Consensus 159 ~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~i~~d~I~vvIHPqSi 238 (383)
T PRK12464 159 KEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAHWLFDIPYEKIDVLIHKESI 238 (383)
T ss_pred ccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEeccCcEEEecCCCCchhHHHhccCCCCccccCCCCCCCCCCC
Q 017567 321 IHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLS 368 (369)
Q Consensus 321 IHsmVef~DGSv~Aql~~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~ 368 (369)
|||||||.|||++||||.||||+||+|||+||+|.+ ...++|||.
T Consensus 239 VHsmVef~DGSv~aql~~pDMr~PI~yAL~yP~R~~---~~~~~ldl~ 283 (383)
T PRK12464 239 IHSLVEFIDGSVLAQLGAPDMRMPIQYAFHYPTRLP---SSYEKLNLL 283 (383)
T ss_pred eeEEEEEcCccEEEEeCCCCcHHHHHHHcCCccccC---CCCCCcCcc
Confidence 999999999999999999999999999999999995 357788876
No 5
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=4.2e-122 Score=915.17 Aligned_cols=288 Identities=60% Similarity=0.946 Sum_probs=279.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
||+|+|||||||||+|||||++++||+|+|+||+|++|+++|.+|+++|+|++|++.|++.+.+|++.+.+ .++++++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~--~~~~v~~ 78 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAA--AGIEVLA 78 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcc--CCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998753 4578999
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHhh
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~L 235 (369)
|++|++++++.+++|+||+||+|++||.||++||++||+|+|||||+||+||++|+++++++|++|+|||||||||||||
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh~ai~q~l 158 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEHSAIFQCL 158 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhhhhhhcCCCCCceeEEE
Q 017567 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (369)
Q Consensus 236 ~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvI 315 (369)
++++.++|++|+|||||||||+|++|+|++|||+|||+||||+||+|||||||||||||||+||||||||+|||+|||||
T Consensus 159 ~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IEA~~Lf~~~~~~I~vvI 238 (385)
T PRK05447 159 PGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 238 (385)
T ss_pred cCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHhHHHHcCCChhhEEEEE
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeeEEeccCcEEEecCCCCchhHHHhccCCCCccccCCCCCCCCCCC
Q 017567 316 HPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLS 368 (369)
Q Consensus 316 HPqSiIHsmVef~DGSv~Aql~~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~ 368 (369)
||||||||||||+|||++||||.||||+||+|||+||+|.+ ...++|||.
T Consensus 239 HpqSivHsmVef~DGsv~aql~~pDMr~pI~yaL~~P~R~~---~~~~~ld~~ 288 (385)
T PRK05447 239 HPQSIIHSMVEYVDGSVLAQLGPPDMRLPIAYALAYPERVP---SGVKPLDLT 288 (385)
T ss_pred CCcCceeEEEEEeCCcEEEeeCCCCcHHHHHHHcCCcccCC---CCCCCcCcc
Confidence 99999999999999999999999999999999999999994 467888876
No 6
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=100.00 E-value=8e-58 Score=369.23 Aligned_cols=84 Identities=73% Similarity=1.126 Sum_probs=78.0
Q ss_pred EeecccchhhHHHhhcCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhhh
Q 017567 221 ILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEA 300 (369)
Q Consensus 221 IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA 300 (369)
|+|||||||||||||++.+.++|++|||||||||||++++++|++||++|||+||||+||+|||||||||||||||||||
T Consensus 1 i~PvDSEHsAifQ~L~~~~~~~v~~i~lTASGGpFr~~~~~~l~~vt~~~al~HP~W~MG~KITiDSATm~NKglEviEA 80 (84)
T PF08436_consen 1 ILPVDSEHSAIFQCLQGEKREEVEKIILTASGGPFRDKPREELKNVTPEQALKHPNWSMGKKITIDSATMMNKGLEVIEA 80 (84)
T ss_dssp EEE-SHHHHHHHHHSGHHHHCTEEEEEEEE--STTTTSHHHHHTT--HHHHTSSSSSCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcccccHHHHHHHHCCCCCccccCEEEEECcchhhCCCCHHHHcCCCHHHHhhCCCCcCCCeeeechHHHHHHhHHHHHH
Confidence 79999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 017567 301 HYLF 304 (369)
Q Consensus 301 ~~LF 304 (369)
||||
T Consensus 81 ~~LF 84 (84)
T PF08436_consen 81 HWLF 84 (84)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9999
No 7
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=100.00 E-value=4.6e-48 Score=335.58 Aligned_cols=129 Identities=57% Similarity=0.852 Sum_probs=118.8
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHH
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~ 158 (369)
|+|||||||||+||||||++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.++++++.+...+.+++++.|++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 78999999999999999999999999999999999999999999999999999999999999998864456799999999
Q ss_pred HHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecc
Q 017567 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (369)
Q Consensus 159 gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG 207 (369)
|++++++++++|+||+||||++||+||++||++||+|||||||||||||
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLANKEsLV~aG 129 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALANKESLVCAG 129 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEechhhhhcCC
Confidence 9999999899999999999999999999999999999999999999998
No 8
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.32 E-value=2.9e-06 Score=86.29 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=86.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd--------~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~ 147 (369)
+-+|+|+| +|.||+..++++.++++ +++|++++.. |.++. +.+.....
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~----~~~~~~~~------------------ 58 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD----RGVDLPGI------------------ 58 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc----cCCCCccc------------------
Confidence 45899999 79999999999988763 6899998764 44332 11111000
Q ss_pred CCCceEEecHHHHHHHhcCCCCCEEEEeccCc-cCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEe
Q 017567 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVGC-AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (369)
Q Consensus 148 ~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~-aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~Il 222 (369)
.+. ....+++..+++|+|+.++.|. .+..-+.+|+++||.|..+||.-+..-|+-+.++|+++|+.+.
T Consensus 59 ----~~~---~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 59 ----LLT---TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred ----cee---CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 010 1245667778899999998663 3455567999999999999998888889999999999998876
No 9
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.03 E-value=1.3e-06 Score=72.62 Aligned_cols=109 Identities=24% Similarity=0.320 Sum_probs=73.0
Q ss_pred CChHhHHHHHHHHhCCC--ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHHHHHH
Q 017567 85 TGSIGTQTLDIVAEHED--KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIE 162 (369)
Q Consensus 85 TGSIGtqTLdVI~~~pd--~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~ 162 (369)
.|.||++-++.+.++++ +|+|++++..+ ..+..... ....+ ..+.. .+.+
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~~~~~~~~-------------------~~~~~----~~~~~---~~~~ 53 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRS--MLISKDWA-------------------ASFPD----EAFTT---DLEE 53 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESS--EEEETTHH-------------------HHHTH----SCEES---SHHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECC--chhhhhhh-------------------hhccc----ccccC---CHHH
Confidence 69999999999999875 69999988755 21111111 11111 11222 2344
Q ss_pred HhcCCCCCEEEEeccCccCcHH-HHHHHHcCCceeeeccccee--ecccchhHHhhhcCCeEe
Q 017567 163 AARHPDAVTVVTGIVGCAGLKP-TVAAIEAGKDIALANKETLI--AGGPFVLPLAHKHNIKIL 222 (369)
Q Consensus 163 ~~~~~~~D~Vv~AIvG~aGL~p-t~~Ai~~gK~iaLANKEsLV--~aG~li~~~a~k~~~~Il 222 (369)
+.+..++|+||.+ .|...+.. ...++++|+.|..+||+-+. .-++-|.++|+++|++++
T Consensus 54 ~~~~~~~dvvVE~-t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 54 LIDDPDIDVVVEC-TSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHTHTT-SEEEE--SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HhcCcCCCEEEEC-CCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4444479999999 55444443 67899999999999999999 889999999999998874
No 10
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.92 E-value=5.8e-05 Score=74.69 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=124.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeecC---------CHHHHHHHHHhhCCCEEEEcCchhHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLDE 139 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~p--------d~F~VvaLaag~---------Nv~lL~eQ~~~FkP~~V~v~de~~~~~ 139 (369)
.+|+|+|. |-||+..++.+++++ -+++|++++-.+ |.+.+.+..+++.. +.. +
T Consensus 3 i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~----~~~---~-- 72 (341)
T PRK06270 3 MKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGK----LAD---Y-- 72 (341)
T ss_pred EEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCC----ccc---C--
Confidence 48999995 999999999998774 269999987532 33333333332210 000 0
Q ss_pred HHHHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCc-----cCcHHHHHHHHcCCceeeecccceeecccchhHHh
Q 017567 140 IKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGC-----AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA 214 (369)
Q Consensus 140 l~~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~-----aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a 214 (369)
. + ......+.++...+++|+||.+..-. .+..-..+|+++||.|..+||.-+-.-++-+.++|
T Consensus 73 -----~------~-~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A 140 (341)
T PRK06270 73 -----P------E-GGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA 140 (341)
T ss_pred -----c------c-ccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH
Confidence 0 0 00112455667677899999987632 23566789999999999999988887788899999
Q ss_pred hhcCCeEeeccc---chhhHHHhhcC-CCCCccceEEEeecCCCCCCCChhhh--ccCCHHHhhcCCCCCCC-----Ccc
Q 017567 215 HKHNIKILPADS---EHSAIFQCIQG-LPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALKHPNWSMG-----KKI 283 (369)
Q Consensus 215 ~k~~~~IlPVDS---EHsAIfQ~L~g-~~~~~v~kiiLTASGGPFr~~~~e~l--~~vT~~dALkHP~W~MG-----~KI 283 (369)
+++|..+.- .+ -+.-+++.|+. ...+.|.+|.=-=||= -+|=+.+| +..+.+|||+- -..+| +.-
T Consensus 141 ~~~g~~~~~-ea~v~~glPii~~l~~~l~g~~I~~I~GIlnGT--~nyIl~~m~~~g~~f~~al~~-Aq~~G~aE~DP~~ 216 (341)
T PRK06270 141 KKNGVRFRY-EATVGGAMPIINLAKETLAGNDIKSIKGILNGT--TNYILTRMEEEGLSYEQALAE-AQELGYAEADPTY 216 (341)
T ss_pred HHcCCEEEE-eeeeeechhHHHHHHhhcccCceEEEEEEEeCc--HHHHHHHHhhcCCCHHHHHHH-HHHcCCCCCCCCC
Confidence 999987761 10 13345665542 2223455542222221 11224445 67888998862 11122 112
Q ss_pred ceehhhhcchhHHHhhhhhhcCCCCC
Q 017567 284 TVDSATLFNKGLEVIEAHYLFGAEYD 309 (369)
Q Consensus 284 TIDSATmmNKgLEvIEA~~LF~i~~d 309 (369)
-||---...|. +|=|+.+||.+.+
T Consensus 217 D~~G~D~a~Kl--~Ila~~~~g~~~~ 240 (341)
T PRK06270 217 DVEGIDAALKV--VILANSILGADLT 240 (341)
T ss_pred CCccHHHHHHH--HHHHHHHcCCCCC
Confidence 23333344565 6778888887644
No 11
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.92 E-value=8.9e-05 Score=70.93 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=104.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~-Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
|.||+|+|. |.||+.-++.+.++|+ ++++++.... +.+...+. +... +.++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~-~~l~~v~~~~~~~~~~~~~---~~~~-----------------------~~~~ 52 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD-LRVDWVIVPEHSIDAVRRA---LGEA-----------------------VRVV 52 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC-ceEEEEEEcCCCHHHHhhh---hccC-----------------------Ceee
Confidence 458999999 9999999999998865 8888877432 32322211 1101 1122
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeec--ccchhHHhhhcCCeEeecccchhhHH
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPADSEHSAIF 232 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~a--G~li~~~a~k~~~~IlPVDSEHsAIf 232 (369)
. .+.++ ..++|+|+.+..-.+-..-..+++++||.+...+...+.-. +..+.+.|+++|.+++. +|-.-...
T Consensus 53 ~---d~~~l--~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~ 126 (265)
T PRK13303 53 S---SVDAL--PQRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGI 126 (265)
T ss_pred C---CHHHh--ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCH
Confidence 1 23344 45799999997776666778999999999999998877533 67788899999987665 77777777
Q ss_pred HhhcCCCCCccceEEEeecCCCC
Q 017567 233 QCIQGLPEGALRRIILTASGGAF 255 (369)
Q Consensus 233 Q~L~g~~~~~v~kiiLTASGGPF 255 (369)
.+|+..+...++.+.+|.-.-|.
T Consensus 127 d~l~~~~~g~~~~v~~~~~k~p~ 149 (265)
T PRK13303 127 DALAAAKEGGLDEVTYTGRKPPK 149 (265)
T ss_pred HHHHHHHhCCceEEEEEEecChh
Confidence 88876666788999998655553
No 12
>PRK11579 putative oxidoreductase; Provisional
Probab=97.90 E-value=0.0013 Score=64.32 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=133.2
Q ss_pred eeEEEEecCChHhH-HHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGT-QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGt-qTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
-||+|+|. |.||. ..+..+++.|+ ++|+|++. .|.++.. .+|. . +.++
T Consensus 5 irvgiiG~-G~i~~~~~~~~~~~~~~-~~l~av~d-~~~~~~~---~~~~-~-----------------------~~~~- 53 (346)
T PRK11579 5 IRVGLIGY-GYASKTFHAPLIAGTPG-LELAAVSS-SDATKVK---ADWP-T-----------------------VTVV- 53 (346)
T ss_pred ceEEEECC-CHHHHHHHHHHHhhCCC-CEEEEEEC-CCHHHHH---hhCC-C-----------------------Ccee-
Confidence 48999995 99998 46788888775 99999864 5655432 1221 0 0111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeec--ccchhHHhhhcCCeEeec-----ccch
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPA-----DSEH 228 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~a--G~li~~~a~k~~~~IlPV-----DSEH 228 (369)
+.+.++.+.+++|.|+.+..=..-..-+.+|+++||.|.. .|-.-... ..-+.++|+++|..+... +..+
T Consensus 54 --~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~ 130 (346)
T PRK11579 54 --SEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVV-DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDF 130 (346)
T ss_pred --CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEE-eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHH
Confidence 2345667777899999998888888999999999999874 66644433 355678889988776544 4556
Q ss_pred hhHHHhhcCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhh-hhhhcCCC
Q 017567 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (369)
Q Consensus 229 sAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (369)
..+-|.++...-.+|..+ ++.-+-++ + . ..++|..-+. -..+.|++-|--.|- ++||||-
T Consensus 131 ~~~k~~i~~g~iG~i~~~--~~~~~~~~--~--~----------~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G~- 191 (346)
T PRK11579 131 LTLKALLAEGVLGEVAYF--ESHFDRFR--P--Q----------VRQRWREQGG--PGSGIWYDLAPHLLDQAIQLFGL- 191 (346)
T ss_pred HHHHHHHhcCCCCCeEEE--EEEecccC--C--C----------CccccccCCC--CCCcchhhhhhhHHHHHHHHhCC-
Confidence 667777765444445333 33322221 1 0 1245653211 134678888855553 4899996
Q ss_pred CCceeEEE---cC----CcceeeeEEeccCcEEEecCC
Q 017567 308 YDNIEIII---HP----QSIIHSMVETQDSSVIGQLGW 338 (369)
Q Consensus 308 ~d~IevvI---HP----qSiIHsmVef~DGSv~Aql~~ 338 (369)
+.++.... +| +-..+.+++|.||.+....++
T Consensus 192 ~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~~~~~s~ 229 (346)
T PRK11579 192 PVSITVDLAQLRPGAQSTDYFHAILSYPQRRVVLHGTM 229 (346)
T ss_pred CeEEEEEeeeecCCCCCCceEEEEEEECCeEEEEEEEe
Confidence 44555433 23 346688999999877555554
No 13
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.83 E-value=0.00026 Score=68.08 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=99.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
.+.||+|+|. |.||+.-.+-+.+....++|+++.. .+.+...+++.++....++
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~d-r~~~~a~~~a~~~g~~~~~------------------------ 58 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAV-RDPQRHADFIWGLRRPPPV------------------------ 58 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEEC-CCHHHHHHHHHhcCCCccc------------------------
Confidence 3579999995 9999998888876434589888754 4677776666666421110
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeE-eecccchhhHHH
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI-LPADSEHSAIFQ 233 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~I-lPVDSEHsAIfQ 233 (369)
..+.+++. ++|.|+.+..-.+--.-..+++++||.+...+-.++.- -.-+.+.++++|.++ +| |=...-|+
T Consensus 59 ---~~~eell~--~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~~-~~~L~~~A~~~g~~l~v~--sGa~~g~d 130 (271)
T PRK13302 59 ---VPLDQLAT--HADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLR-NEDLIDLARQNGGQIIVP--TGALLGLD 130 (271)
T ss_pred ---CCHHHHhc--CCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhHHh-HHHHHHHHHHcCCEEEEc--chHHHhHH
Confidence 12234443 47999998776655555688999999987644333321 255677889999987 56 77777789
Q ss_pred hhcCCCCCccceEEEeec
Q 017567 234 CIQGLPEGALRRIILTAS 251 (369)
Q Consensus 234 ~L~g~~~~~v~kiiLTAS 251 (369)
+|+......++.+.+|.-
T Consensus 131 ~l~~g~iG~~~~v~~~tr 148 (271)
T PRK13302 131 AVTAAAEGTIHSVKMITR 148 (271)
T ss_pred HHHHHHcCCceEEEEEEe
Confidence 988766677888988875
No 14
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.68 E-value=0.00063 Score=55.61 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=81.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecH
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (369)
||+|+|. |++|+.-+.-+.+..++++|+|+. ..+-+...+.+++|.-. ...
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~-d~~~~~~~~~~~~~~~~--~~~------------------------- 52 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVC-DPDPERAEAFAEKYGIP--VYT------------------------- 52 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEE-CSSHHHHHHHHHHTTSE--EES-------------------------
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEE-eCCHHHHHHHHHHhccc--chh-------------------------
Confidence 7999998 999999999999988889999985 45677776666777654 222
Q ss_pred HHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccc--eeecccchhHHhhhcCCe
Q 017567 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET--LIAGGPFVLPLAHKHNIK 220 (369)
Q Consensus 158 ~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEs--LV~aG~li~~~a~k~~~~ 220 (369)
.+.++.+.+++|.|+.+..--.-...+..++++||.|.+= |=. =..-..-+.++++++|..
T Consensus 53 -~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~E-KP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 53 -DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVE-KPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp -SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEE-SSSSSSHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEE-cCCcCCHHHHHHHHHHHHHhCCE
Confidence 1345566568999999999999999999999999977641 111 011123345566666654
No 15
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.58 E-value=0.00045 Score=68.59 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=86.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeecC---------CHHHHHHHHHhhCCCEEEEcCchhHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLDE 139 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~p--------d~F~VvaLaag~---------Nv~lL~eQ~~~FkP~~V~v~de~~~~~ 139 (369)
-+|+|+| .|.||+.+++++.++. -+++|++++-.+ +++.+.+..+++..-. .
T Consensus 3 i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------~ 71 (336)
T PRK08374 3 VKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------N 71 (336)
T ss_pred eEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------h
Confidence 4899999 7999999999998743 248899987422 2222222222221100 0
Q ss_pred HHHHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCC
Q 017567 140 IKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI 219 (369)
Q Consensus 140 l~~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~ 219 (369)
+ .. +...+ .-...++....++|+||+.+.+-..-.-..+++++||.|-.|||..+-.-++-+.++|+++++
T Consensus 72 ~----~~-~~~~~----~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~ 142 (336)
T PRK08374 72 W----GN-DYEVY----NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNL 142 (336)
T ss_pred c----cc-ccccc----CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCC
Confidence 0 00 00000 003456666567999999997766666677899999999999999888888899999999998
Q ss_pred eEe
Q 017567 220 KIL 222 (369)
Q Consensus 220 ~Il 222 (369)
+++
T Consensus 143 ~~~ 145 (336)
T PRK08374 143 PYL 145 (336)
T ss_pred eEE
Confidence 887
No 16
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.54 E-value=0.00015 Score=72.76 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=80.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd--------~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~ 148 (369)
-+|+|+| .|-||+..++++.++.+ +++|++++. ++..++.+- -+.++. .+........+.+.+.
T Consensus 3 i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~-~~~~~~~~~--gi~~~~-~l~~~~~~~~~~~~~~--- 74 (346)
T PRK06813 3 IKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG-RNVAIHNED--GLSIHH-LLRYGGGSCAIEKYIE--- 74 (346)
T ss_pred eEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe-cchhhcccc--CCChhh-hhhccccccchhhhhc---
Confidence 4799999 89999999999987643 578888864 343333210 000000 0000000000011110
Q ss_pred CCceEEecHHHHHHHh-cCCCCCEEEEec----cC-ccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEe
Q 017567 149 EKPEILAGEQGVIEAA-RHPDAVTVVTGI----VG-CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (369)
Q Consensus 149 ~~~~v~~G~~gl~~~~-~~~~~D~Vv~AI----vG-~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~Il 222 (369)
.-..++. ...+.|+||... .| -.+..-..+|+++||.|--|||.-+-.-++-++++|+++|+.++
T Consensus 75 ---------~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 75 ---------HHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred ---------cChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 0001222 223689999984 22 34555567899999999999999999999999999999998875
No 17
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.50 E-value=0.0012 Score=67.42 Aligned_cols=215 Identities=20% Similarity=0.207 Sum_probs=135.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC--CEEEEcCchhHHHHHHHHhcCCCCceE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP--QVVAVRNESLLDEIKEALANVEEKPEI 153 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP--~~V~v~de~~~~~l~~~l~~~~~~~~v 153 (369)
|++|.|+|| |-||+.+..-+.++-| ++|.. |.++.+++++......+ +...+ |-
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~i--AdRs~~~~~~i~~~~~~~v~~~~v-D~------------------- 56 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTI--ADRSKEKCARIAELIGGKVEALQV-DA------------------- 56 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEE--EeCCHHHHHHHHhhccccceeEEe-cc-------------------
Confidence 578999999 9999999999999877 88875 34667777766555433 22222 11
Q ss_pred EecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc-eeeecccceeecccchhHHhhhcCCeEee---cccchh
Q 017567 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALANKETLIAGGPFVLPLAHKHNIKILP---ADSEHS 229 (369)
Q Consensus 154 ~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~-iaLANKEsLV~aG~li~~~a~k~~~~IlP---VDSEHs 229 (369)
.+.+++.++.+. .|+|++++.++-++.-.-+|+++|.. |=++|.|--. +.+.+.|++.|..++| +|-=-+
T Consensus 57 -~d~~al~~li~~--~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~---~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 57 -ADVDALVALIKD--FDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPP---WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred -cChHHHHHHHhc--CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchh---hhhhHHHHHcCeEEEcccCcCcchH
Confidence 134566777764 59999999999999999999999988 6688888772 6678899999988887 333222
Q ss_pred hHHHh--hcCCCCCccceEEEeecCCCCCC-CChhhhccCCHHH---hhcCC--CCCCCCccceehhhhcchhHHHhhhh
Q 017567 230 AIFQC--IQGLPEGALRRIILTASGGAFRD-WPVEKLKEVKVAD---ALKHP--NWSMGKKITVDSATLFNKGLEVIEAH 301 (369)
Q Consensus 230 AIfQ~--L~g~~~~~v~kiiLTASGGPFr~-~~~e~l~~vT~~d---ALkHP--~W~MG~KITIDSATmmNKgLEvIEA~ 301 (369)
-+|-- .+... .+++.|-+=-=|+|=+. -|+.-=-+-.++. .+.-| -|.-|+-++||+ ||..| -
T Consensus 131 nv~a~~a~~~~~-~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~-------~~~~~-~ 201 (389)
T COG1748 131 NVLAAYAAKELF-DEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDP-------LEERE-V 201 (389)
T ss_pred HHHHHHHHHHhh-ccccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecC-------ccccc-c
Confidence 22211 11111 15666666555555544 1111111222332 23344 377888888876 45555 2
Q ss_pred hhcCCC-CCceeEEEcCCcceeeeEEeccCc
Q 017567 302 YLFGAE-YDNIEIIIHPQSIIHSMVETQDSS 331 (369)
Q Consensus 302 ~LF~i~-~d~IevvIHPqSiIHsmVef~DGS 331 (369)
+-|..+ +-+....-|++ .|+++++.+|-
T Consensus 202 ~~~~~~G~~~~y~~~~~e--l~sL~~~i~~~ 230 (389)
T COG1748 202 FEFPVIGYGDVYAFYHDE--LRSLVKTIPGV 230 (389)
T ss_pred cccCCCCceeEEecCCcc--HHHHHHhCccc
Confidence 222222 33444444444 58888888865
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.48 E-value=0.00073 Score=67.22 Aligned_cols=201 Identities=20% Similarity=0.205 Sum_probs=114.2
Q ss_pred eEEEEecCChHhHHHHHHHHhC------CCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCc
Q 017567 78 PISVLGSTGSIGTQTLDIVAEH------EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~------pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~ 151 (369)
+|+|+| -|.||+.+++++++. ...++|++++..+ ..+ ++|+-+ +.+++.+.... + ..
T Consensus 2 rVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~-g~l-------~~~~Gl------dl~~l~~~~~~-g-~l 64 (326)
T PRK06392 2 RISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK-LSY-------YNERGL------DIGKIISYKEK-G-RL 64 (326)
T ss_pred EEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC-Ccc-------cCCcCC------ChHHHHHHHhc-C-cc
Confidence 799999 699999999999874 3578999987532 111 111111 01111111100 0 00
Q ss_pred eEEecHH--HHHHHhcCCCCCEEEEeccCc----cCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEe---
Q 017567 152 EILAGEQ--GVIEAARHPDAVTVVTGIVGC----AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL--- 222 (369)
Q Consensus 152 ~v~~G~~--gl~~~~~~~~~D~Vv~AIvG~----aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~Il--- 222 (369)
..+ +.+ .+.++.. .++|+||.+..+. .++.-..+|+++||.|..|||--|...++-++++|+++|+++.
T Consensus 65 ~~~-~~~~~~~~~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~ea 142 (326)
T PRK06392 65 EEI-DYEKIKFDEIFE-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEA 142 (326)
T ss_pred ccC-CCCcCCHHHHhc-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEee
Confidence 000 001 2344444 5799999998643 2445557899999999999999998888999999999998875
Q ss_pred ------ecccchhhHHHhhcCCCCCccceEEEeecCCCCCCCChhhh-ccCCHHHhhcCCCCCCC-----Cccceehhhh
Q 017567 223 ------PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL-KEVKVADALKHPNWSMG-----KKITVDSATL 290 (369)
Q Consensus 223 ------PVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~l-~~vT~~dALkHP~W~MG-----~KITIDSATm 290 (369)
||=+ .+-.+|.|.+-..|+.| |..+- ++=+.+| +..+.+|||+.- ..+| +.--||---.
T Consensus 143 tV~~g~Pii~---~~~~~~~g~~i~~i~Gi-lnGT~----nyIl~~m~~g~~f~~al~eA-q~lG~aE~DP~~Dv~G~D~ 213 (326)
T PRK06392 143 TVAGGVPLFS---LRDYSTLPSRIKNFRGI-VSSTI----NYVIRQEANGRGFLDVVKIA-QKMGIAETNYSDDLMGLDA 213 (326)
T ss_pred eeeeccchhh---hhhhhcccCCEEEEEEE-EeChH----HHHHhhccCCCCHHHHHHHH-HHcCCCCCCCccccCCHHH
Confidence 6532 34334555443334332 21111 1112233 577778877631 2222 1112222223
Q ss_pred cchhHHHhhhhhhcCCCC
Q 017567 291 FNKGLEVIEAHYLFGAEY 308 (369)
Q Consensus 291 mNKgLEvIEA~~LF~i~~ 308 (369)
..|. +|=|+.+||.+.
T Consensus 214 a~Kl--~ILa~~~~g~~~ 229 (326)
T PRK06392 214 ARKS--VILANHLFGKDY 229 (326)
T ss_pred HHHH--HHHHHHHcCCCC
Confidence 3444 567777777654
No 19
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.36 E-value=0.0038 Score=59.74 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=95.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.||+|+|. |.||+.-..-+.+.+..++++++. .++.+...+.++++... ++
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~a~~~a~~~~~~-------------------------~~-- 52 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFY-DRNLEKAENLASKTGAK-------------------------AC-- 52 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEE-CCCHHHHHHHHHhcCCe-------------------------eE--
Confidence 58999995 999999888888764368988865 55666665555544321 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceee--cccchhHHhhhcCCeEeecccchhhHHHh
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA--GGPFVLPLAHKHNIKILPADSEHSAIFQC 234 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~--aG~li~~~a~k~~~~IlPVDSEHsAIfQ~ 234 (369)
+.+.++. .++|+|+.+..-.+-..-+..++++||.+....-..+.- -..-+.++|+++|.+++. +|---...+.
T Consensus 53 -~~~~ell--~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v-~sga~~g~d~ 128 (265)
T PRK13304 53 -LSIDELV--EDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYL-PSGAIVGLDG 128 (265)
T ss_pred -CCHHHHh--cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEE-eCchHHhHHH
Confidence 1234454 368999998655555555677999999986633222211 123566789999988774 5533444588
Q ss_pred hcCCCCCccceEEEeecCCC
Q 017567 235 IQGLPEGALRRIILTASGGA 254 (369)
Q Consensus 235 L~g~~~~~v~kiiLTASGGP 254 (369)
|+......++.+.+|..--|
T Consensus 129 i~a~~~G~i~~V~~~~~k~p 148 (265)
T PRK13304 129 IKAASLGEIKSVTLTTRKPP 148 (265)
T ss_pred HHHHhcCCccEEEEEEecCh
Confidence 87656667888888876555
No 20
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.32 E-value=0.0082 Score=68.13 Aligned_cols=195 Identities=17% Similarity=0.198 Sum_probs=124.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceE------------EEEEeecCCHHHHHHHHHhh-CCCEEEEcCchhHHHHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFR------------VVALAAGSNITLLADQVKRF-KPQVVAVRNESLLDEIK 141 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~------------VvaLaag~Nv~lL~eQ~~~F-kP~~V~v~de~~~~~l~ 141 (369)
.+|+|+|+|| |.||....+.+.++|+ ++ ++++ |-.|.+...+.++.+ +.+.+.+ |
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~-~~~~~~~~~~~~~~lV~V-aD~~~~~a~~la~~~~~~~~v~l-D-------- 635 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKT-ISYYGDDSEEPTDVHVIV-ASLYLKDAKETVEGIENAEAVQL-D-------- 635 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcC-ccccccccccccccEEEE-ECCCHHHHHHHHHhcCCCceEEe-e--------
Confidence 4789999998 9999999999998876 33 3333 445666655555555 2222222 1
Q ss_pred HHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeE
Q 017567 142 EALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (369)
Q Consensus 142 ~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~I 221 (369)
+.-.+.+.++.+ ++|.||+++.......-..+|+++||.+.-+. ..+..-.-+.+.|++.|+.+
T Consensus 636 ------------v~D~e~L~~~v~--~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~ 699 (1042)
T PLN02819 636 ------------VSDSESLLKYVS--QVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITI 699 (1042)
T ss_pred ------------cCCHHHHHHhhc--CCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEE
Confidence 112233444443 49999999999999999999999999997774 34445566778899999999
Q ss_pred ee---cccchhh--HHHhhcCC--CCCccceEEEeecCCC---CCCCChhhhccCCHHHh---hcCC--CCCCCCcccee
Q 017567 222 LP---ADSEHSA--IFQCIQGL--PEGALRRIILTASGGA---FRDWPVEKLKEVKVADA---LKHP--NWSMGKKITVD 286 (369)
Q Consensus 222 lP---VDSEHsA--IfQ~L~g~--~~~~v~kiiLTASGGP---Fr~~~~e~l~~vT~~dA---LkHP--~W~MG~KITID 286 (369)
+| .|.-... .-+++... ....|..+....=|=| +-+=++.---.-+|+.+ ...| -|.-|+.++||
T Consensus 700 m~e~GlDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V~ 779 (1042)
T PLN02819 700 LCEMGLDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHVD 779 (1042)
T ss_pred EECCccCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEec
Confidence 88 4544444 34555432 2245665555554445 22222222222334333 3344 37789999999
Q ss_pred hhhhcchhHHH
Q 017567 287 SATLFNKGLEV 297 (369)
Q Consensus 287 SATmmNKgLEv 297 (369)
...||...-++
T Consensus 780 ~~~l~~~~~~~ 790 (1042)
T PLN02819 780 GENLFASAVRF 790 (1042)
T ss_pred chhhhhhcccc
Confidence 99887766443
No 21
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.19 E-value=0.0032 Score=60.01 Aligned_cols=210 Identities=17% Similarity=0.220 Sum_probs=138.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
.+.||+|+|+.|..+..-+..+++.++.++++++. ..|.+++.+.+++|....++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~-d~~~~~a~~~a~~~~~~~~~------------------------ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVV-DRDPERAEAFAEEFGIAKAY------------------------ 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEe-cCCHHHHHHHHHHcCCCccc------------------------
Confidence 45699999999888888999999887667888865 56889999999999865211
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceee------ecccceeecccchhHHhhhcCCeEee-----
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL------ANKETLIAGGPFVLPLAHKHNIKILP----- 223 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL------ANKEsLV~aG~li~~~a~k~~~~IlP----- 223 (369)
+.+.++.+.+++|.|+.+..=..=...+++|+++||.|.. -=.| ..-+.++|+++|..+.-
T Consensus 57 ---~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~e-----a~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 57 ---TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEE-----AEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred ---CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHH-----HHHHHHHHHHcCCceeeehhhh
Confidence 1235667777899999999999999999999999987643 2223 33466788888755432
Q ss_pred cccchhhHHHhhcCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhh-hhh
Q 017567 224 ADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHY 302 (369)
Q Consensus 224 VDSEHsAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIE-A~~ 302 (369)
=|.-+.++-++|....-..|..+-.+.+..... .-..+.|.+..+-.= +.++..|.-.|- ++|
T Consensus 129 f~p~~~~~k~li~~g~lG~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g--G~l~d~giH~lD~~~~ 192 (342)
T COG0673 129 FDPAVQALKELIDSGALGEVVSVQASFSRDRPN--------------PPPPPWWRFDRADGG--GALLDLGIHDLDLLRF 192 (342)
T ss_pred cCHHHHHHHHHHhcCCcCceEEEEEEeeccccc--------------cCCccceecccccCC--CchhhhHHHHHHHHHH
Confidence 244455555555554445565555554433221 122344444333222 456666666554 678
Q ss_pred hcCC-CCCceeEEEcCC--------cceeeeEEeccCcEE
Q 017567 303 LFGA-EYDNIEIIIHPQ--------SIIHSMVETQDSSVI 333 (369)
Q Consensus 303 LF~i-~~d~IevvIHPq--------SiIHsmVef~DGSv~ 333 (369)
|||- ++..+.+..+.. -..+.+.+|.||..-
T Consensus 193 l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~~~g~~~ 232 (342)
T COG0673 193 LLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLA 232 (342)
T ss_pred HcCCcchhheeeecccCCCCcccccceEEEEEEecCCceE
Confidence 8887 466777766532 346777777774443
No 22
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.16 E-value=0.0063 Score=60.19 Aligned_cols=186 Identities=17% Similarity=0.119 Sum_probs=102.9
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh-CCCEEEE-cCchhHHHHHHHHhcCCCCceEEec
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAV-RNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F-kP~~V~v-~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
|.|||+ |.+|+.+++.+.++++..+ -+.+++|.+++.+.+.++ ..+.-.+ .|-. .
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~--v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~--------------------~ 57 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEE--VTVADRNPEKAERLAEKLLGDRVEAVQVDVN--------------------D 57 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-E--EEEEESSHHHHHHHHT--TTTTEEEEE--TT--------------------T
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCc--EEEEECCHHHHHHHHhhccccceeEEEEecC--------------------C
Confidence 789999 9999999999999865333 334678999998888763 2233222 1111 2
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccce-eecccchhHHhhhcCCeEee---cccc---hh
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL-IAGGPFVLPLAHKHNIKILP---ADSE---HS 229 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsL-V~aG~li~~~a~k~~~~IlP---VDSE---Hs 229 (369)
.+.+.++++. .|+|||+...+.+..-..+|+++|....= -+. ...=.-+.+.+++.|..+++ .|+= .-
T Consensus 58 ~~~l~~~~~~--~dvVin~~gp~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~ 132 (386)
T PF03435_consen 58 PESLAELLRG--CDVVINCAGPFFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLL 132 (386)
T ss_dssp HHHHHHHHTT--SSEEEE-SSGGGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHH
T ss_pred HHHHHHHHhc--CCEEEECCccchhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHH
Confidence 3446666654 69999999888888889999999987544 111 11112334577788888875 3332 22
Q ss_pred hH--HHhhcCCCCCccceEEEeecCCCCCCCChhh---hccCCHHHhhcC-----CCCCCCCccceehhhhcch
Q 017567 230 AI--FQCIQGLPEGALRRIILTASGGAFRDWPVEK---LKEVKVADALKH-----PNWSMGKKITVDSATLFNK 293 (369)
Q Consensus 230 AI--fQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~---l~~vT~~dALkH-----P~W~MG~KITIDSATmmNK 293 (369)
|- .|.|.+ ....++.+.+...|-|.-.++... --.-+++..|.. ..|.-|+.+.++..+...+
T Consensus 133 a~~~~~~~~~-~~~~v~~~~~~~g~~~~p~~~~~~~~~~~~ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~~~ 205 (386)
T PF03435_consen 133 ARYAADELDA-EGDEVESVDIYVGGLPAPEAPDNPLGYKFTWSPEGVLEEYSPPARVYRDGKWVEVPPFSEEER 205 (386)
T ss_dssp HHHHHHHHHH-TTHEEEEEEEEEEEEEEGCG--TTTSEEBSS-HHHHHHHHCS-EEEEETTEEEEEETTTTCCC
T ss_pred HHHHHHHhhh-hcccceEEEEEEccccCCCCCCCCcccceeeeehhhHHhhcccceEeeCCEEEEecCccccce
Confidence 21 122221 123577777655555111111111 112333333332 2577788888887765543
No 23
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.11 E-value=0.007 Score=59.48 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=89.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~-Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|+|+|+ |.||+.-+.-+.+. +++++++++... +.+.+ +.++++.-. ..+
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~l-a~A~~~Gi~-------------------------~~~ 53 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGL-ARARELGVK-------------------------TSA 53 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHH-HHHHHCCCC-------------------------EEE
Confidence 47999996 99999886655554 469999987642 21222 234444321 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHH-----h-hhcCCeEeec-ccch
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL-----A-HKHNIKILPA-DSEH 228 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~-----a-~k~~~~IlPV-DSEH 228 (369)
++..++.+++++|.|+.+.....-..-..+|+++||.+. -+|-.- -|+|+-+. + ...+.+++-. ..-.
T Consensus 54 --~~~e~ll~~~dIDaV~iaTp~~~H~e~a~~al~aGk~VI-dekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~at 128 (285)
T TIGR03215 54 --EGVDGLLANPDIDIVFDATSAKAHARHARLLAELGKIVI-DLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQAT 128 (285)
T ss_pred --CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCEEE-ECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHHH
Confidence 123444556789999999999999999999999999873 233322 23444221 1 1122333322 2222
Q ss_pred hhHHHhhcCC---CCCccceEEEeecCCCCCCCChhhhccCC
Q 017567 229 SAIFQCIQGL---PEGALRRIILTASGGAFRDWPVEKLKEVK 267 (369)
Q Consensus 229 sAIfQ~L~g~---~~~~v~kiiLTASGGPFr~~~~e~l~~vT 267 (369)
..+...|+-. ...+|-.-+-..|+||...-..++|..-|
T Consensus 129 ip~~~al~r~~d~~~~~iv~ti~s~S~g~g~r~~idel~~~t 170 (285)
T TIGR03215 129 IPIVAAISRVAPVHYAEIVASIASRSAGPGTRANIDEFTETT 170 (285)
T ss_pred HHHHHHHHHhhccccEEEEEEEEeeccCCCchhHHHHHHHHH
Confidence 2333333321 11122233466788996545556666444
No 24
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.07 E-value=0.0033 Score=63.04 Aligned_cols=127 Identities=18% Similarity=0.186 Sum_probs=90.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
+.||+|+|+ |+ |..=++.+++.|++++|+|++. .+.++..+.+++|.-.. |
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d-~~~erA~~~A~~~gi~~--------y------------------ 53 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILA-QGSERSRALAHRLGVPL--------Y------------------ 53 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEc-CCHHHHHHHHHHhCCCc--------c------------------
Confidence 569999999 75 9999999999988899999876 46888888888887321 1
Q ss_pred cHHHHHHHhcCCCCCEEEE--eccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHH
Q 017567 156 GEQGVIEAARHPDAVTVVT--GIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 233 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~--AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ 233 (369)
..+.++....++|.|.. +..+..+-.-+.+|+++||.|.. =|=.-..-+.-+.++|+++|..+. | ..++--++
T Consensus 54 --~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~-EKPla~~Ea~el~~~A~~~g~~l~-v-~~f~p~~~ 128 (343)
T TIGR01761 54 --CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ-EHPLHPRDIQDLLRLAERQGRRYL-V-NTFYPHLP 128 (343)
T ss_pred --CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEE-cCCCCHHHHHHHHHHHHHcCCEEE-E-EecCHHHH
Confidence 12245555556666666 33577889999999999998753 121112345667788999888776 4 34555555
Q ss_pred hhc
Q 017567 234 CIQ 236 (369)
Q Consensus 234 ~L~ 236 (369)
.++
T Consensus 129 ~vr 131 (343)
T TIGR01761 129 AVR 131 (343)
T ss_pred HHH
Confidence 554
No 25
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.02 E-value=0.0013 Score=55.47 Aligned_cols=35 Identities=40% Similarity=0.768 Sum_probs=32.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~N 113 (369)
||+|+|+||.+|+..++.+.+||+ |+++.+...++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEeeeecc
Confidence 699999999999999999999876 99999999887
No 26
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.81 E-value=0.0056 Score=67.70 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=82.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd--------~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~ 148 (369)
-+|+|+| .|.||+..++++.++.+ +++|++++. ++..++ +|+-+ + ...+.+.+....
T Consensus 459 i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~-s~~~~~-------~~~gi---~---~~~~~~~~~~~~ 523 (810)
T PRK09466 459 IGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD-SRRSLL-------NYDGL---D---ASRALAFFDDEA 523 (810)
T ss_pred EEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe-CCcccc-------CccCC---C---HHHHHhhHHhhc
Confidence 4899999 79999999999987643 588999864 332211 12111 1 111111111100
Q ss_pred CCceEEecHHHHHHHhcCCC--CCEEEEeccCccCcHHHHHHHHcCCceeeecccc---eeecccchhHHhhhcCCeEe
Q 017567 149 EKPEILAGEQGVIEAARHPD--AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET---LIAGGPFVLPLAHKHNIKIL 222 (369)
Q Consensus 149 ~~~~v~~G~~gl~~~~~~~~--~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEs---LV~aG~li~~~a~k~~~~Il 222 (369)
.. ...+.+.+.....+ .++||....|-.......+|+++||.|-.|||.. ...-++-++++|+++|+.++
T Consensus 524 ~~----~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~ 598 (810)
T PRK09466 524 VE----WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL 598 (810)
T ss_pred CC----ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE
Confidence 00 12244455554333 4699999988766666679999999999999984 34677888899999998763
No 27
>PRK10206 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.12 Score=51.12 Aligned_cols=200 Identities=19% Similarity=0.258 Sum_probs=118.4
Q ss_pred eeEEEEecCChHhHH-HHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQ-TLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtq-TLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
-||+|+|. |.|+.. -+..+.+.+++++|+|++-. |-+. .+.+.+|.-. .+
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~-~~~~-~~~~~~~~~~------------------------~~-- 52 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRR-HAKP-EEQAPIYSHI------------------------HF-- 52 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcC-ChhH-HHHHHhcCCC------------------------cc--
Confidence 47999997 666654 46766666778999998764 4333 3444444310 01
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccce--eecccchhHHhhhcCCeEeec-----ccch
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL--IAGGPFVLPLAHKHNIKILPA-----DSEH 228 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsL--V~aG~li~~~a~k~~~~IlPV-----DSEH 228 (369)
-..+.++.+.+++|.|+.+..=..=..-+.+|+++||.|.+ -|=.- +.-..-+.++++++|..+..- +..+
T Consensus 53 -~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~ 130 (344)
T PRK10206 53 -TSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCF 130 (344)
T ss_pred -cCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHH
Confidence 12345667777899999998877778889999999998875 44332 223466778899999876542 3344
Q ss_pred hhHHHhhcCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHHHhh-hhhhcCCC
Q 017567 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (369)
Q Consensus 229 sAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (369)
..+-++|+...-.+|..+- +.=+.||..+. ..|.+ -+.+.|++-|--.|- +.|||| +
T Consensus 131 ~~~k~li~~g~iG~i~~i~--~~~~~~~~~~~------------~~~~~-------~~gG~l~d~g~H~ld~~~~l~G-~ 188 (344)
T PRK10206 131 LTAKKAIESGKLGEIVEVE--SHFDYYRPVAE------------TKPGL-------PQDGAFYGLGVHTMDQIISLFG-R 188 (344)
T ss_pred HHHHHHHHcCCCCCeEEEE--EEecccCCccc------------cccCC-------CCCceeechhHHHHHHHHHHcC-C
Confidence 5666677654444554333 32222332110 01111 122345555544443 478888 4
Q ss_pred CCceeEEEc-------CCcceeeeEEecc
Q 017567 308 YDNIEIIIH-------PQSIIHSMVETQD 329 (369)
Q Consensus 308 ~d~IevvIH-------PqSiIHsmVef~D 329 (369)
++++..... .+-..+.+++|.+
T Consensus 189 ~~~v~a~~~~~~~~~~~~d~~~~~l~f~~ 217 (344)
T PRK10206 189 PDHVAYDIRSLRNKANPDDTFEAQLFYGD 217 (344)
T ss_pred CeEEEEEeecccCCCCCCceEEEEEEeCC
Confidence 556655432 2345677888843
No 28
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.68 E-value=0.0089 Score=54.32 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=60.4
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec--
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG-- 156 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G-- 156 (369)
|+|+|+||.+|.+.++.+.+ ..|+|.+|+=..+ ....++.+.-. -.++..|-.+.+.|.++|.+.+. +-+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~--~~~~V~~l~R~~~-~~~~~~l~~~g-~~vv~~d~~~~~~l~~al~g~d~-v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS--AGFSVRALVRDPS-SDRAQQLQALG-AEVVEADYDDPESLVAALKGVDA-VFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH--TTGCEEEEESSSH-HHHHHHHHHTT-TEEEES-TT-HHHHHHHHTTCSE-EEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh--CCCCcEEEEeccc-hhhhhhhhccc-ceEeecccCCHHHHHHHHcCCce-EEeecCcc
Confidence 78999999999999999998 6799999985543 33444445444 34557777777778877765431 112222
Q ss_pred -------HHHHHHHhcCCCCCEEEEeccCccC
Q 017567 157 -------EQGVIEAARHPDAVTVVTGIVGCAG 181 (369)
Q Consensus 157 -------~~gl~~~~~~~~~D~Vv~AIvG~aG 181 (369)
...+++.+....++.+|-.-.|...
T Consensus 76 ~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 76 HPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 1235555554456666654444444
No 29
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.014 Score=58.09 Aligned_cols=110 Identities=21% Similarity=0.185 Sum_probs=72.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
|.||+|.|. |.||+..++.+.++| .|+|+|+... +.+..+.+++++.-+. ....+...+ .+.+ .++.+ .
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~-d~eLvav~d~-~~~~~~~la~~~G~~~-~~~~~~~~~----~~~~--~~i~V-~ 69 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQP-DMELVGVAKT-KPDYEARVAVEKGYPL-YVADPEREK----AFEE--AGIPV-A 69 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCC-CcEEEEEECC-ChHHHHHHHHhcCCCc-cccCccccc----cccC--CceEE-c
Confidence 358999999 999999999999875 5999999874 4666666666553221 111111110 0111 11223 1
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANK 200 (369)
| ...++. .++|+|+.+.....+..-...++++||.+..-.-
T Consensus 70 ~--~~~el~--~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 70 G--TIEDLL--EKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred C--ChhHhh--ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 2 133444 2599999999999999999999999988766553
No 30
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.58 E-value=0.013 Score=58.30 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=99.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH-HHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL-LADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~l-L~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
+.||+|+| ||.||+.-+.-+.+. +.+++++++.. |.+. ..+.+++|.-... +
T Consensus 4 klrVAIIG-tG~IGt~hm~~l~~~-~~velvAVvdi-d~es~gla~A~~~Gi~~~------------------------~ 56 (302)
T PRK08300 4 KLKVAIIG-SGNIGTDLMIKILRS-EHLEPGAMVGI-DPESDGLARARRLGVATS------------------------A 56 (302)
T ss_pred CCeEEEEc-CcHHHHHHHHHHhcC-CCcEEEEEEeC-ChhhHHHHHHHHcCCCcc------------------------c
Confidence 45899999 999999867666664 56999998765 3332 2244666542211 1
Q ss_pred ecHHHHHHHhcC---CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHh------hhcCCeEeec-
Q 017567 155 AGEQGVIEAARH---PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA------HKHNIKILPA- 224 (369)
Q Consensus 155 ~G~~gl~~~~~~---~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a------~k~~~~IlPV- 224 (369)
+++.++.++ +++|+|+.+.....-..-...++++||.+. -||=.. -|+|+.+.. ...+.+|+-.
T Consensus 57 ---~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VI-D~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p 130 (302)
T PRK08300 57 ---EGIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAI-DLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCG 130 (302)
T ss_pred ---CCHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEE-ECCccc--cCCcccCcCCHHHHhcccCCCEEECc
Confidence 123334444 679999999999888888999999998754 444443 467775432 1223333311
Q ss_pred ccchhhHHHhhcCCCCCccceEEE---eecCCCCCCCChhhhccCCH
Q 017567 225 DSEHSAIFQCIQGLPEGALRRIIL---TASGGAFRDWPVEKLKEVKV 268 (369)
Q Consensus 225 DSEHsAIfQ~L~g~~~~~v~kiiL---TASGGPFr~~~~e~l~~vT~ 268 (369)
..--..+...|.-....+..+|+- ..|=||.+.-..|||..-|-
T Consensus 131 ~~ati~~v~Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE~~~~t~ 177 (302)
T PRK08300 131 GQATIPIVAAVSRVAPVHYAEIVASIASKSAGPGTRANIDEFTETTS 177 (302)
T ss_pred cHHHHHHHHHhcccCcCceeeeeeeehhhccCCcccccHHHHHHHHH
Confidence 222233444444433446778883 24569998788888876553
No 31
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0038 Score=62.84 Aligned_cols=120 Identities=27% Similarity=0.297 Sum_probs=82.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd--------~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~ 148 (369)
-+|+|+| .|-||+..+++++++.+ .|+|++++..+ ..+.. .+.... +..+++...
T Consensus 4 v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~-~~~~~----~~~~~~--------~~~~~~~~~--- 66 (333)
T COG0460 4 VKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRD-GSLVR----DLDLLN--------AEVWTTDGA--- 66 (333)
T ss_pred EEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEecc-chhcc----cccccc--------hhhheeccc---
Confidence 4899999 58899999999998754 56777766543 22221 111100 001111000
Q ss_pred CCceEEecHHHHHHHhcCCCCCEEEEeccC-ccCc---HHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeE
Q 017567 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVG-CAGL---KPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (369)
Q Consensus 149 ~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG-~aGL---~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~I 221 (369)
.. .+ .+++...++|+||.++.| +..= .-..+|+++||.|--|||--|-.-|.-|++.|+++|+.+
T Consensus 67 --~~-----~~-~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l 135 (333)
T COG0460 67 --LS-----LG-DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKL 135 (333)
T ss_pred --cc-----cc-HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeE
Confidence 00 11 345566789999999999 5444 457789999999999999999999999999999999876
No 32
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.53 E-value=0.013 Score=64.86 Aligned_cols=129 Identities=21% Similarity=0.206 Sum_probs=85.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcC
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd-------~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~ 147 (369)
.+.+|+|+| .|-||.+.++++.+..+ +++|++++. ++..+ |.|+-+ + ...+++.+...
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~-s~~~~-------~~~~g~---~---~~~~~~~~~~~ 528 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN-SRKML-------LDEHGI---D---LDNWREELAEA 528 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc-CCccc-------cCCCCC---C---HHHHHHHHhhc
Confidence 346899999 79999999999987653 577888753 32111 222211 1 12333332211
Q ss_pred CCCceEEecHHHHHHHhcC--CCCCEEEEeccCccCcHHHHHHHHcCCceeeeccccee---ecccchhHHhhhcCCeEe
Q 017567 148 EEKPEILAGEQGVIEAARH--PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLI---AGGPFVLPLAHKHNIKIL 222 (369)
Q Consensus 148 ~~~~~v~~G~~gl~~~~~~--~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV---~aG~li~~~a~k~~~~Il 222 (369)
. -..+.+.+.+.... .+.|+||....+..-..-..+|+++||.|-.|||.-+. .-++-++++|+++|+.++
T Consensus 529 ~----~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~ 604 (819)
T PRK09436 529 G----EPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL 604 (819)
T ss_pred c----CCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE
Confidence 1 11234455555432 25799999998865444556999999999999999887 367888999999998876
No 33
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.47 E-value=0.0058 Score=60.74 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=57.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHH-HHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT-LLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~-lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
++||+|+|+||.+|+..++.+.++|+ +++++++.++... .+.+. .|....+.+ ..+-
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~-~elv~v~~~~~~g~~l~~~----~~~~~~~~~-----------------~~~~ 59 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE-VEIVAVTSRSSAGKPLSDV----HPHLRGLVD-----------------LVLE 59 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC-ceEEEEECccccCcchHHh----CcccccccC-----------------ceee
Confidence 46899999999999999999999875 8999988744322 22222 121110000 0000
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+.+.. ..++|.|+.+...-.-.....+++++|+.
T Consensus 60 ----~~~~~~-~~~vD~Vf~alP~~~~~~~v~~a~~aG~~ 94 (343)
T PRK00436 60 ----PLDPEI-LAGADVVFLALPHGVSMDLAPQLLEAGVK 94 (343)
T ss_pred ----cCCHHH-hcCCCEEEECCCcHHHHHHHHHHHhCCCE
Confidence 001111 23588888888877777777777788764
No 34
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.33 E-value=0.046 Score=56.15 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=107.0
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH-hhCCCEEEEcCchhHHHHHHHHhcCCC
Q 017567 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK-RFKPQVVAVRNESLLDEIKEALANVEE 149 (369)
Q Consensus 71 ~~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~-~FkP~~V~v~de~~~~~l~~~l~~~~~ 149 (369)
..-+.|-||.++|| |.-|+-.+.-+.+-|. |+|+|++.. |++...+..+ -+-|+.-++ +......+..++.. +
T Consensus 12 aa~G~PiRVGlIGA-G~mG~~ivtQi~~m~G-m~vvaisd~-~~~~ak~A~~~ag~~~~~~~-e~~~~s~~a~Ai~a-G- 85 (438)
T COG4091 12 AAEGKPIRVGLIGA-GEMGTGIVTQIASMPG-MEVVAISDR-NLDAAKRAYDRAGGPKIEAV-EADDASKMADAIEA-G- 85 (438)
T ss_pred hccCCceEEEEecc-cccchHHHHHHhhcCC-ceEEEEecc-cchHHHHHHHHhcCCccccc-ccchhhHHHHHHhc-C-
Confidence 34467889999997 8889988888887665 999998854 6776666665 345554333 22223344444432 1
Q ss_pred CceEEecHHHHHHHhcCCCCCEEEEeccCc--cCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEe-eccc
Q 017567 150 KPEILAGEQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL-PADS 226 (369)
Q Consensus 150 ~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~--aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~Il-PVDS 226 (369)
++ .+.+ ...++...+..|+||.| .|. .|-+-.+.||.+||.|-+-|=|.=|.=|+++++.|.+.|+-.- ----
T Consensus 86 Ki-~vT~--D~~~i~~~~~IdvIIdA-TG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GD 161 (438)
T COG4091 86 KI-AVTD--DAELIIANDLIDVIIDA-TGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGD 161 (438)
T ss_pred cE-EEec--chhhhhcCCcceEEEEc-CCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCC
Confidence 12 2223 23445667789999988 454 4667789999999999999999999999999999998885332 2234
Q ss_pred chhhHHHhhc
Q 017567 227 EHSAIFQCIQ 236 (369)
Q Consensus 227 EHsAIfQ~L~ 236 (369)
|-+++-.+.+
T Consensus 162 eP~~~mEL~e 171 (438)
T COG4091 162 EPSSCMELYE 171 (438)
T ss_pred CcHHHHHHHH
Confidence 5566555543
No 35
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.29 E-value=0.011 Score=56.29 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=62.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
|.||+|+|+||-+|+..++.+.++|+ ++|+++..... +...+. .++ ++.+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-~elvav~d~~~-~~~~~~-~~~-------------------------~i~~-- 50 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-LELVAAVDRPG-SPLVGQ-GAL-------------------------GVAI-- 50 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-CEEEEEEecCC-cccccc-CCC-------------------------Cccc--
Confidence 35899999999999999999988765 99999875433 222111 000 0101
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeec
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLAN 199 (369)
.+.+.++.+ ++|+|+....-.....-...|+++||.+.+.+
T Consensus 51 -~~dl~~ll~--~~DvVid~t~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 51 -TDDLEAVLA--DADVLIDFTTPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred -cCCHHHhcc--CCCEEEECCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 122344443 58899987776677777889999999988764
No 36
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.25 E-value=0.031 Score=53.77 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=61.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.||+|.|++|-+|+.-++.+.++| +++++++....+-+...+ ...++... . ..++.+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~----------------~~~~~~~~-~--~~gv~~~-- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGT----------------DAGELAGI-G--KVGVPVT-- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCC----------------CHHHhcCc-C--cCCceee--
Confidence 489999999999999999999885 599999887554432210 00011000 0 0112222
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeec
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLAN 199 (369)
..+.++ . .++|+||..-.=.+...-...|+++|+.+...-
T Consensus 60 -~d~~~l-~-~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 60 -DDLEAV-E-TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred -CCHHHh-c-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 123344 2 358999887655555666778888888877643
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.11 E-value=0.016 Score=57.77 Aligned_cols=34 Identities=18% Similarity=0.479 Sum_probs=29.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
+||+|+|+||.+|..-++.+.+||+ ++++++.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-~el~~l~~s 34 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-VEITYLVSS 34 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-ceEEEEecc
Confidence 3799999999999999999999975 899988543
No 38
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.10 E-value=0.022 Score=49.43 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=30.6
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
|+|+|+||.||+..++-+.+.+ ++|++++ +|-+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~--R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALV--RSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEE--SSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEe--cCchhccc
Confidence 7899999999999999998875 9999998 44445544
No 39
>PLN02700 homoserine dehydrogenase family protein
Probab=95.96 E-value=0.062 Score=54.99 Aligned_cols=55 Identities=25% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEe
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~Il 222 (369)
...+++|.+..+..-..-...|+++|+.|-.|||--+...++.++++++ ++++++
T Consensus 108 ~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~ 162 (377)
T PLN02700 108 STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIR 162 (377)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEE
Confidence 3469999999886666677789999999999999999999999988885 676654
No 40
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.84 E-value=0.014 Score=59.23 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=34.3
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI 114 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv 114 (369)
..++||+|+|+||.+|...++++.+|| .|+|..++..++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~sa 75 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKA 75 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhc
Confidence 356699999999999999999999997 4899999875443
No 41
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=95.59 E-value=0.14 Score=46.29 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=44.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
.|++.|.|+||.||..+.+-+.+. .++|+.+. ++..+.+.++.++...+...+ .|-...+.+..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA--GADIVGAG-RSEPSETQQQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEc-CchHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 378999999999999999998875 57887765 444566777777766554333 44444444444
No 42
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.48 E-value=0.23 Score=48.45 Aligned_cols=141 Identities=17% Similarity=0.237 Sum_probs=89.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecH
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (369)
+|+|.|+ |-||++.++.++..|-+|+.+++ +.++.++..+..+-|.++.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v-~D~~~ek~~~~~~~~~~~~~s--------------------------- 52 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAV-YDRDEEKAKELEASVGRRCVS--------------------------- 52 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEE-ecCCHHHHHHHHhhcCCCccc---------------------------
Confidence 6889997 88999999999999989999885 567889888888888765541
Q ss_pred HHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeeccc--chhHHhhhcCCeEeecccchhhHHHhh
Q 017567 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGP--FVLPLAHKHNIKILPADSEHSAIFQCI 235 (369)
Q Consensus 158 ~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~--li~~~a~k~~~~IlPVDSEHsAIfQ~L 235 (369)
.+.++. .++|++|.|-+==|=..-...++++|+++....=-.|.==|- -+.++||..+.++.=.-----+| ..|
T Consensus 53 -~ide~~--~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl-D~l 128 (255)
T COG1712 53 -DIDELI--AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL-DAL 128 (255)
T ss_pred -cHHHHh--hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH-HHH
Confidence 112333 357777777555555555677888888875443211110010 02457777777765221111111 223
Q ss_pred cCCCCCccceEEEeec
Q 017567 236 QGLPEGALRRIILTAS 251 (369)
Q Consensus 236 ~g~~~~~v~kiiLTAS 251 (369)
..-.-..|+.+.||.-
T Consensus 129 ~aar~g~i~~V~lttr 144 (255)
T COG1712 129 AAARVGGIEEVVLTTR 144 (255)
T ss_pred HHhhcCCeeEEEEEee
Confidence 3233467999999973
No 43
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.22 E-value=0.039 Score=55.38 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCCH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaag~Nv 114 (369)
..+|+|+||||-+|...++++.+ ||. ++|+.++..++.
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~sa 43 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPV-GELYALASEESA 43 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcC
Confidence 34899999999999999999998 875 899999765443
No 44
>PLN02778 3,5-epimerase/4-reductase
Probab=95.18 E-value=0.066 Score=51.46 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=41.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhCCCEEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVA 130 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa-g~Nv~lL~eQ~~~FkP~~V~ 130 (369)
+||.|+|+||+||....+-+.+. .++|+.... -.+.+.+....++.+|++|.
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~--g~~V~~~~~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQ--GIDFHYGSGRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhC--CCEEEEecCccCCHHHHHHHHHhcCCCEEE
Confidence 57999999999999999988876 456765433 35677777778888999877
No 45
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.16 E-value=0.22 Score=45.58 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=45.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~-v~de~~~~~l~~ 142 (369)
.|++.|.|+||.||.+..+-+.++ .++|+.+.-+.+.+.+.+...+...+... ..|-...+.++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 80 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEK 80 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 378999999999999999999875 67887776556677777777665544332 234444444443
No 46
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.04 E-value=0.26 Score=44.96 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=51.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.|.|+||.||....+-+.++ .++|+.++ +|.+.+.+...+..++...+ .|-...+.+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~---------- 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATG--RRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLA---------- 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHH----------
Confidence 46999999999999999998875 67777654 45666665555554443322 34444444444321
Q ss_pred cHHHHHHHhcCCCCCEEEEeccC
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVG 178 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG 178 (369)
.+.+ ...++|.|+++...
T Consensus 67 ---~~~~--~~~~id~vi~~ag~ 84 (248)
T PRK10538 67 ---SLPA--EWRNIDVLVNNAGL 84 (248)
T ss_pred ---HHHH--HcCCCCEEEECCCc
Confidence 1111 12368999987544
No 47
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.01 E-value=0.07 Score=51.20 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=42.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec----CCHHHHHHHHHhhCCCEEEEc
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAVR 132 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag----~Nv~lL~eQ~~~FkP~~V~v~ 132 (369)
+||.|+|+||.||..-.+.+++ ..++|+++.-. .+.+.+.+..++++|++|.-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~--~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE--RGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT--TSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhh--CCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEecc
Confidence 4799999999999999999887 36899998432 367888899999999988754
No 48
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.14 Score=45.39 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=30.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
+|++.|+|+||+||....+.+.+. ++|+++. +|.+.+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~--r~~~~~~~~ 42 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT---HTLLLGG--RPAERLDEL 42 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEe--CCHHHHHHH
Confidence 478999999999999999988875 7787775 455554433
No 49
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.3 Score=43.73 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=50.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC--CCE-EEEcCchhHHHHHHHHhcCCCCceE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEEKPEI 153 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk--P~~-V~v~de~~~~~l~~~l~~~~~~~~v 153 (369)
++|.|+|+||.||....+-+.++ .++|+++. +|-+.+.+..++++ .+. +...|-...+.+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~-------- 74 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE--GYKVAITA--RDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVD-------- 74 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEee--CCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH--------
Confidence 68999999999999999998875 67887764 55566555554443 222 22234444444444332
Q ss_pred EecHHHHHHHhcCCCCCEEEEec
Q 017567 154 LAGEQGVIEAARHPDAVTVVTGI 176 (369)
Q Consensus 154 ~~G~~gl~~~~~~~~~D~Vv~AI 176 (369)
.+.+. ...+|+|++..
T Consensus 75 -----~~~~~--~~~~d~vi~~a 90 (237)
T PRK07326 75 -----AIVAA--FGGLDVLIANA 90 (237)
T ss_pred -----HHHHH--cCCCCEEEECC
Confidence 11111 23588999874
No 50
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.37 Score=43.55 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=39.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEE-EEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~--Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~ 142 (369)
.|++.|.|+||.||....+-+.+. .++|++++-+. +.+.+.+..+....+.. ...|-...+.++.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 368999999999999999988765 57887764322 23334444444433332 2345444444444
No 51
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.34 Score=44.02 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=49.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCC--EEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ--VVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~--~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
|++.|.|+||.||....+-+.++ .++|+.+. +|-+.+.+...++.-. .+...|-...+.+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--------- 78 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA--GARVHVCD--VSEAALAATAARLPGAKVTATVADVADPAQVERVFD--------- 78 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHH---------
Confidence 68999999999999999999876 56776655 3445554444443211 233344444444444332
Q ss_pred ecHHHHHHHhcCCCCCEEEEecc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIV 177 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIv 177 (369)
.+.+.. .++|.|+....
T Consensus 79 ----~~~~~~--~~~d~vi~~ag 95 (264)
T PRK12829 79 ----TAVERF--GGLDVLVNNAG 95 (264)
T ss_pred ----HHHHHh--CCCCEEEECCC
Confidence 111211 36899998744
No 52
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.80 E-value=0.061 Score=54.39 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=29.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE---EEEEeecCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALAAGSN 113 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~---VvaLaag~N 113 (369)
.+|+|+|+||.+|...++++.+||+ |+ +..++..++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~-f~v~~l~~~aS~~s 44 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETK-FNIAEVTLLSSKRS 44 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCC-CCcccEEEEECccc
Confidence 4899999999999999999998876 88 656654433
No 53
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.76 E-value=0.045 Score=54.59 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh-CCCEEEEcC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAVRN 133 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F-kP~~V~v~d 133 (369)
+.||+|+|+||.+|...++++.+|| .|++++++.....+. ..--..| ..+.|+++-
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~~~-~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRKDA-AARRELLNAADVAILCL 58 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCCcc-cCchhhhcCCCEEEECC
Confidence 3589999999999999999999999 599999987654322 1111122 357777643
No 54
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.73 E-value=0.3 Score=49.10 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=27.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.++|.|+|+||.||+...+-+.+. .++|++++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR--GYNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 458999999999999999988765 68899886
No 55
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.69 E-value=0.38 Score=45.87 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=68.7
Q ss_pred HHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeec-----ccchhHHhhhcCCeEeecccchhhHHHh
Q 017567 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG-----GPFVLPLAHKHNIKILPADSEHSAIFQC 234 (369)
Q Consensus 160 l~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~a-----G~li~~~a~k~~~~IlPVDSEHsAIfQ~ 234 (369)
+.+++. +++|.|+.+-.=.+=-.-+.+++++||.+.. |+..+- ..-+.+.++++|.++..- |-+-+.++.
T Consensus 30 ~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~---~s~gAlad~e~~~~l~~aA~~~g~~l~i~-sGai~g~d~ 104 (229)
T TIGR03855 30 FDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLI---MSVGALADRELRERLREVARSSGRKVYIP-SGAIGGLDA 104 (229)
T ss_pred HHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEE---ECCcccCCHHHHHHHHHHHHhcCCEEEEC-hHHHHHHHH
Confidence 345554 4699999997777777778999999999988 665432 344677899999887644 777788899
Q ss_pred hcCCCCCccceEEEeecCCC
Q 017567 235 IQGLPEGALRRIILTASGGA 254 (369)
Q Consensus 235 L~g~~~~~v~kiiLTASGGP 254 (369)
|+......++.+.+|..=.|
T Consensus 105 l~a~~ig~~~~V~i~~~k~p 124 (229)
T TIGR03855 105 LKAASLGRIERVVLTTTKPP 124 (229)
T ss_pred HHhcccCCceEEEEEEecCh
Confidence 98777788999999976444
No 56
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.39 Score=43.96 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=35.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
||++.|.|+||.||....+-+.+. .++|+.+. +|.+.+.+...+..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~ 46 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE--GWRVGAYD--INEAGLAALAAELG 46 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHhc
Confidence 478999999999999999988875 57787764 56777766655543
No 57
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.28 Score=44.68 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=42.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 144 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l 144 (369)
++++.|.|+||.||.+..+-+.+. .++|+.+ .+|.+++.++..+...-.+...|-.+.+.+++.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 65 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQ--GWQVIAC--GRNQSVLDELHTQSANIFTLAFDVTDHPGTKAAL 65 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhC--CCEEEEE--ECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHH
Confidence 468999999999999988888765 5777664 3577777666554322222334545555555543
No 58
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.51 E-value=0.16 Score=54.65 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHH-hCCCceEEEEEeecCCHHHHHHHHHhhC--CCEE-EEcCchhHHHHHHHHhcCCCC
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVA-EHEDKFRVVALAAGSNITLLADQVKRFK--PQVV-AVRNESLLDEIKEALANVEEK 150 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~-~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk--P~~V-~v~de~~~~~l~~~l~~~~~~ 150 (369)
.-|+|.|.|+|||||..-..-+. .+|.+..+..-.= .|...+....++.- .++. .+.|-.+++.+...+.+ ++
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~--~k 325 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-YKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEG--HK 325 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-HHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhc--CC
Confidence 34899999999999999876555 4566655544221 13333333333331 2333 35666777777777654 34
Q ss_pred ceEEecHHHHHH--HhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 151 PEILAGEQGVIE--AARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 151 ~~v~~G~~gl~~--~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
+++.+-..+++. +++.....-|-|=|-|..- -.-+|+++|
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~n--v~~aa~~~~ 367 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTEN--VAEAAIKNG 367 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHH--HHHHHHHhC
Confidence 666666666554 3444333344444444322 224455555
No 59
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.51 E-value=0.11 Score=48.05 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=41.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec----CCHHHHHHHHHhhCCCEEEE
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag----~Nv~lL~eQ~~~FkP~~V~v 131 (369)
||.|+|+||+||+...+-+.+. .++|++++-. .|.+.+.+.++..+|++|+-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~--g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE--GRVVVALTSSQLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999988875 6888887542 35567777777778888764
No 60
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.33 Score=43.02 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=30.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
.|++.|.|+||+||....+-+.+. .++|++++ +|.+.+.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~ 47 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR--GARVALIG--RGAAPLSQT 47 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC--CCeEEEEe--CChHhHHHH
Confidence 468999999999999999988775 67877665 344444333
No 61
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.43 E-value=0.26 Score=44.46 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=50.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH---HHHhhCCCEEEE-cCchhHHHHHHHHhcCCCCce
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e---Q~~~FkP~~V~v-~de~~~~~l~~~l~~~~~~~~ 152 (369)
|++.|.|+||.||....+-+.++ .++|+.+.. +|-+++.+ +++....+...+ .|-.+.+.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~--g~~v~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~------ 75 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEE--GYDIAVNYA-RSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQ------ 75 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH------
Confidence 68999999999999999999886 567765433 44444444 444444343333 454555555544321
Q ss_pred EEecHHHHHHHhcCCCCCEEEEec
Q 017567 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (369)
Q Consensus 153 v~~G~~gl~~~~~~~~~D~Vv~AI 176 (369)
+.+ ....+|+|++..
T Consensus 76 -------~~~--~~~~id~vi~~a 90 (250)
T PRK08063 76 -------IDE--EFGRLDVFVNNA 90 (250)
T ss_pred -------HHH--HcCCCCEEEECC
Confidence 111 123589999873
No 62
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.42 E-value=0.29 Score=48.39 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=63.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCch-hHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~-~~~~l~~~l~~~~~~~~v~ 154 (369)
-.+|.|.|+||.+|+-++++.+.. .+.+++.+..+ ++.. .++++..+++.-..+. ..+.+++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~--~k~~-~~~~lGAd~vi~y~~~~~~~~v~~------------ 205 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSS--EKLE-LLKELGADHVINYREEDFVEQVRE------------ 205 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCH--HHHH-HHHhcCCCEEEcCCcccHHHHHHH------------
Confidence 468999999999999999999987 34677766554 5555 7899999888764443 2333333
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.....+|+|++. +|-.-+...+.+++.+-++.
T Consensus 206 --------~t~g~gvDvv~D~-vG~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 206 --------LTGGKGVDVVLDT-VGGDTFAASLAALAPGGRLV 238 (326)
T ss_pred --------HcCCCCceEEEEC-CCHHHHHHHHHHhccCCEEE
Confidence 2222347777776 44455555666666665544
No 63
>PRK09186 flagellin modification protein A; Provisional
Probab=94.41 E-value=0.38 Score=43.57 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=41.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-----CCEEE-EcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-----PQVVA-VRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk-----P~~V~-v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||....+.+.+. .++|+.+. ++.+.+.+...+.+ ..... ..|-.+.+.+.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~--g~~v~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA--GGIVIAAD--IDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--cChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 368999999999999999999875 67887763 45555544444432 12222 4455555555544
No 64
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.37 E-value=0.39 Score=43.57 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=42.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEE-EEcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVV-AVRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~-Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||......+.++ .++|+.+.-.. ..+.+.+++++...+.. ...|-...+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA--GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 368999999999999999999886 56777553221 23445555555554433 23555555555544
No 65
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.61 Score=42.79 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
+|++.|.|+||.||++..+.+.+. .++|+.+ .+|.+.+.+...+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ--GATLGLV--ARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhc
Confidence 368999999999999999999876 5677654 35677777666655
No 66
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.32 E-value=0.71 Score=41.05 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=40.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~---eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
..|++.|.|+||.||....+-+.+. .++|+.++.+ ..+.+. +..+....++..+ .|-...+.+++.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ--GANVVINYAS-SEAGAEALVAEIGALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC-chhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3468999999999999999998875 6788766543 333333 3333333444333 344444444443
No 67
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.24 E-value=0.42 Score=43.62 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=39.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEE-EcCchhHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F---kP~~V~-v~de~~~~~l~~~ 143 (369)
|++.|.|+||+||....+-+.+. .++|+.+ .+|-+.+.++..+. .++... ..|-...+.+++.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQA--GAEVILN--GRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHH
Confidence 68999999999999999988875 6888765 34555554444333 233322 2344444444443
No 68
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.21 E-value=0.47 Score=42.62 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=49.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC--CCE-EEEcCchhHHHHHHHHhcCCCCce
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEEKPE 152 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk--P~~-V~v~de~~~~~l~~~l~~~~~~~~ 152 (369)
.|++.|.|+||.||.+..+.+.+. .++|++++ +|.+.+.++..+.. .+. +...|-.+.+.++..+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE--GARVVVTD--RNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA------- 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH-------
Confidence 368999999999999999998876 56766653 44555555544433 222 22344444444544332
Q ss_pred EEecHHHHHHHhcCCCCCEEEEec
Q 017567 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (369)
Q Consensus 153 v~~G~~gl~~~~~~~~~D~Vv~AI 176 (369)
.+.+ ....+|.|++..
T Consensus 74 ------~~~~--~~~~~d~vi~~a 89 (251)
T PRK07231 74 ------AALE--RFGSVDILVNNA 89 (251)
T ss_pred ------HHHH--HhCCCCEEEECC
Confidence 1111 234689988874
No 69
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.20 E-value=0.6 Score=41.42 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=40.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHH---HHHHHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT---LLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~---lL~eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
+|+|.|.|+||.||.+..+-+.+. .++|+.++. ++-+ .+.+..++..++...+ .|-...+.+++.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~--g~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARA--GADVVVHYR-SDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeC-CCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHH
Confidence 478999999999999999988875 456655443 3433 3444444444443222 444444444443
No 70
>PRK06196 oxidoreductase; Provisional
Probab=94.17 E-value=0.47 Score=45.41 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=41.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
.|+|.|.|+||.||..+..-+.+. .++|+.+ .+|.+.+.+...+.+--.+...|-.+.+.+++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~--G~~Vv~~--~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~ 88 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQA--GAHVIVP--ARRPDVAREALAGIDGVEVVMLDLADLESVRA 88 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhhhCeEEEccCCCHHHHHH
Confidence 378999999999999999988875 5777764 35667666655554311222344444444443
No 71
>PLN02583 cinnamoyl-CoA reductase
Probab=94.15 E-value=0.3 Score=46.47 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.|+|.|.|+||.||....+-+.+. .|+|+++.-
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R 38 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQ 38 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEc
Confidence 468999999999999999988875 689988764
No 72
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=94.09 E-value=0.067 Score=47.48 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=31.9
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~ 118 (369)
|.|+|+||+||....+-+.+. .++|++++..++-+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~--g~~v~~~~~~~~~~~~~ 38 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK--GHEVIVLSRSSNSESFE 38 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TTEEEEEESCSTGGHHH
T ss_pred EEEEccCCHHHHHHHHHHHHc--CCccccccccccccccc
Confidence 789999999999999999876 56788988887766543
No 73
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=94.09 E-value=0.46 Score=43.34 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~ 127 (369)
.|++.|.|+||.||....+-+.+. .++|+.+.-....+.+.++++....+
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~ 57 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSELVHEVAAELRAAGGE 57 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchHHHHHHHHHHhcCCe
Confidence 368999999999999999988875 57777654332234444444444333
No 74
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.53 Score=43.08 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=40.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
.|+|.|.|+||.||.+..+-+.++ .++|+.+. +|-+.+.+...++...++ ..|-...+.++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~ 68 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE--GATVVVGD--IDPEAGKAAADEVGGLFV-PTDVTDEDAVNA 68 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHcCCcEE-EeeCCCHHHHHH
Confidence 368999999999999999999876 57776654 455555554455543333 334444444443
No 75
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.03 E-value=0.55 Score=43.26 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=44.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||..+-.-+.+. .++|+.+ .+++.+.+.++.++...+...+ .|-.+.+.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA--GADIVGV-GVAEAPETQAQVEALGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe-cCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHH
Confidence 368999999999999999988875 7788765 3455666777777665554332 444444444443
No 76
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.02 E-value=0.084 Score=52.80 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=40.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH-HHHHhhCCCEEEEcC
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA-DQVKRFKPQVVAVRN 133 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~-eQ~~~FkP~~V~v~d 133 (369)
||+|+|+||..|...++.+.+||+ |+++.+++.++.+... +++. -+.+.|+++-
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~~~~~~~~~~~-~~~D~vFlal 57 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRRKDAAERAKLL-NAADVAILCL 57 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccccCcCCHhHhh-cCCCEEEECC
Confidence 799999999999999999999987 9999999887643211 1110 1357777643
No 77
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.97 E-value=0.34 Score=43.56 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=33.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
+++.|+|+||.||..+...+.++ .++|+.+ ++|.+++.+.+.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~--~R~~~~~~~l~~~l 72 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLV--GRDLERAQKAADSL 72 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHH
Confidence 68999999999999998888875 3566654 46777776665544
No 78
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=93.96 E-value=0.54 Score=42.51 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=40.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~---eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
+|+|.|.|+||.||......+.+. .++|+. ...+|.+.+. ++++++.++...+ .|-...+.+++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~--g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR--GWSVGI-NYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIA 69 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHH
Confidence 468999999999999999998875 577754 4455665544 4444444443333 33333333443
No 79
>PRK05717 oxidoreductase; Validated
Probab=93.91 E-value=0.66 Score=42.45 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=33.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
|++.|.|+||+||..+..-+.+. .++|+.+. ++.+.+.+..+++..
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~--g~~v~~~~--~~~~~~~~~~~~~~~ 56 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAE--GWQVVLAD--LDRERGSKVAKALGE 56 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHc--CCEEEEEc--CCHHHHHHHHHHcCC
Confidence 68999999999999999988875 56776653 455555555555543
No 80
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.6 Score=42.71 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE-EEEcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV-VAVRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~-V~v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||....+-+.+. .++|+.++-..+.+.+.+..+....+. ....|-...+.++..
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH--GANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHH
Confidence 368999999999999999999876 677776654333333333333323332 233454444445443
No 81
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.83 E-value=0.19 Score=46.52 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=27.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+|.|.|+||+||...++-+.+....++|+++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 58999999999999999887765568898875
No 82
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.72 Score=42.64 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=50.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-CCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-PQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk-P~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
.|++.|.|+||.||....+.+.+. .++|+.+ .+|.+.+.+..++.. ..++ ..|-...+.+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~--------- 70 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAAL--GARVAIG--DLDEALAKETAAELGLVVGG-PLDVTDPASFAAFLD--------- 70 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--ECCHHHHHHHHHHhccceEE-EccCCCHHHHHHHHH---------
Confidence 368999999999999999988875 5666554 367788777666654 3332 344444444444331
Q ss_pred ecHHHHHHHhcCCCCCEEEEe
Q 017567 155 AGEQGVIEAARHPDAVTVVTG 175 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~A 175 (369)
.+.+. ..+.|++|+.
T Consensus 71 ----~~~~~--~~~id~li~~ 85 (273)
T PRK07825 71 ----AVEAD--LGPIDVLVNN 85 (273)
T ss_pred ----HHHHH--cCCCCEEEEC
Confidence 11221 2468888886
No 83
>PRK12743 oxidoreductase; Provisional
Probab=93.80 E-value=0.55 Score=43.08 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=41.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv---~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
+|++.|.|+||.||......+.++ .++|+.+.. ++. +.+.++++++..+...+ .|-...+.++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~--G~~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ--GFDIGITWH-SDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQ 69 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeC-CChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 368999999999999999999886 678866543 343 44555555555443332 34444444443
No 84
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.80 E-value=0.61 Score=42.53 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=39.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
|++.|.|+||.||......+.+. .++|+.++-...-..+.+++++...+...+ .|-...+.++.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEE--GAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRD 72 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc--CCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 58999999999999999998876 456666543322224445555555544333 44444444444
No 85
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.67 Score=42.86 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=43.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~-v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+..+++..+... ..|-.+.+.+++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA--GARVAIV--DIDADNGAAVAASLGERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHH
Confidence 368999999999999999998875 5677665 35666676666666543322 2444444444443
No 86
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.77 Score=42.49 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=38.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~-v~de~~~~~l~~ 142 (369)
|++.|.|+||.||....+-+.+. .++|+++. +|.+.+.++..++..+... -.|-.+.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR--GDRVAATV--RRPDALDDLKARYGDRLWVLQLDVTDSAAVRA 65 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHhccCceEEEEccCCCHHHHHH
Confidence 67999999999999999888765 46676654 4556555544444333222 234344444444
No 87
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.71 E-value=0.65 Score=41.91 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=39.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEE-EEcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~-Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~ 142 (369)
|++.|.|+||.||.+...-+.+. .++|+.+.-.. +.+.+.+.+++..++.. ...|-.+.+.++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKA 72 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 67999999999999999998875 57888765321 22334444443333332 2344444444444
No 88
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.12 Score=52.31 Aligned_cols=89 Identities=24% Similarity=0.295 Sum_probs=51.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHh-CCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~-~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
+++|+|+|+||.+|+..++.+.+ |+.-=++..++-.++.. ++..+|+=+.+.+-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG---~~~~~f~~~~~~v~---------------------- 55 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAG---KKYIEFGGKSIGVP---------------------- 55 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccC---CccccccCccccCc----------------------
Confidence 36899999999999999999998 76633344444333322 11233332221110
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
+...++....++|+|+.+.-|-..-+---++.++|
T Consensus 56 ---~~~~~~~~~~~~Divf~~ag~~~s~~~~p~~~~~G 90 (334)
T COG0136 56 ---EDAADEFVFSDVDIVFFAAGGSVSKEVEPKAAEAG 90 (334)
T ss_pred ---cccccccccccCCEEEEeCchHHHHHHHHHHHHcC
Confidence 00111222236889998887766655555566666
No 89
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.63 E-value=0.091 Score=52.30 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=29.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (369)
+.||+|+|+||.||...++.+.+||+ ++|+++
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~-~el~~~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW-FEVTAL 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC-ceEEEE
Confidence 46899999999999999999999876 699998
No 90
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.8 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
+|++.|.|+||.||....+.+.+. .++|++++ +|.+.+.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 40 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA--GYEVWATA--RKAEDVEA 40 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 478999999999999999998875 68888764 34454443
No 91
>PRK06182 short chain dehydrogenase; Validated
Probab=93.60 E-value=0.79 Score=42.45 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=50.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.|++.|.|+||.||....+.+.+. .++|++++ +|.+.+.+... .+..++ ..|-.+.+.+.+.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~l~~~~~-~~~~~~-~~Dv~~~~~~~~~~~---------- 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ--GYTVYGAA--RRVDKMEDLAS-LGVHPL-SLDVTDEASIKAAVD---------- 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHh-CCCeEE-EeeCCCHHHHHHHHH----------
Confidence 468999999999999999988764 67887764 56676655432 233332 234344444443321
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccC
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAG 181 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aG 181 (369)
.+.+ ....+|+||+. +|...
T Consensus 67 ---~~~~--~~~~id~li~~-ag~~~ 86 (273)
T PRK06182 67 ---TIIA--EEGRIDVLVNN-AGYGS 86 (273)
T ss_pred ---HHHH--hcCCCCEEEEC-CCcCC
Confidence 1111 12468999987 45443
No 92
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.76 Score=41.26 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||....+.+.+. .++|+.+ .++-+.+.+...++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 51 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA--GATVAFN--DGLAAEARELAAAL 51 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHH
Confidence 368999999999999999998875 5778776 35566655554443
No 93
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.54 E-value=0.2 Score=47.91 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=37.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec--------CCHHHHHHHHHhhCCCEEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--------SNITLLADQVKRFKPQVVA 130 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag--------~Nv~lL~eQ~~~FkP~~V~ 130 (369)
+||.|+|+||+||....+-+.+.. +|+++.-. .+.+.+.+..++.+|+.|.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 379999999999999988776543 47776532 3445676777777898776
No 94
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.54 E-value=0.18 Score=49.61 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=39.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
+||+|+|+||.+|..+...+...+-.++|+.+.-..+.++|..+..++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~ 49 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY 49 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh
Confidence 4799999999999999999998777778888877666677766665543
No 95
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.52 E-value=0.38 Score=46.19 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+|.|+|+||+||...++-+.+. .++|++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE--GYQVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCeEEEEE
Confidence 7999999999999999988875 68999987
No 96
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.51 E-value=0.94 Score=40.22 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=47.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH---HhhCCCEEEE-cCchhHHHHHHHHhcCCCCce
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~---~~FkP~~V~v-~de~~~~~l~~~l~~~~~~~~ 152 (369)
|+|.|.|+||.||....+.+.++ .++|+.++ +|-+.+.+.. ++...+...+ .|-...+.+...+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 74 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD--GAKVVIYD--SNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIE------- 74 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH-------
Confidence 68999999999999999998876 56665554 3444444333 3333343333 34333344444332
Q ss_pred EEecHHHHHHHhcCCCCCEEEEec
Q 017567 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (369)
Q Consensus 153 v~~G~~gl~~~~~~~~~D~Vv~AI 176 (369)
++.+. ...+|.|+...
T Consensus 75 ------~~~~~--~~~id~vi~~a 90 (246)
T PRK05653 75 ------AAVEA--FGALDILVNNA 90 (246)
T ss_pred ------HHHHH--hCCCCEEEECC
Confidence 11221 24588888874
No 97
>PRK08278 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.84 Score=42.69 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC--------HHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN--------ITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~N--------v~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
|++.|.|+||.||.+..+-+.++ .++|+.+.-... .+.+.+++++...+...+ .|-...+.+++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARD--GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 68999999999999999998876 467776642211 334445555544444333 44444444444
No 98
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.48 E-value=1 Score=41.82 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=34.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
.|+|.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+...++.
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~ 48 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALER--GDRVVATA--RDTATLADLAEKYG 48 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHhcc
Confidence 368999999999999999988765 57777654 56666666555553
No 99
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.94 Score=40.82 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=40.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh--CCCE-EEEcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQV-VAVRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F--kP~~-V~v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||.+..+-+.+. ..+|+.+. +|.+.+.+...+. +.+. +...|-.+.+.+++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE--GARVVVAD--RDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEec--CCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 468999999999999999988875 57776654 4555554444433 2222 222444444445443
No 100
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.39 E-value=0.87 Score=41.84 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=41.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE-EEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~ 142 (369)
.|++.|.|+||.||..+..-+.+. .++|+.+ .+|-+.+.+...++..+.. ...|-.+.+.+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE--GARVAVL--ERSAEKLASLRQRFGDHVLVVEGDVTSYADNQR 69 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCcceEEEccCCCHHHHHH
Confidence 468999999999999999998876 5677664 3566666665555543322 2234333334443
No 101
>PRK08643 acetoin reductase; Validated
Probab=93.39 E-value=0.81 Score=41.67 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=31.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
|++.|.|+||.||.+..+.+.++ .++|+.+. ++.+.+.+...
T Consensus 3 k~~lItGas~giG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~ 44 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED--GFKVAIVD--YNEETAQAAAD 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 57999999999999999999876 67877765 33444443333
No 102
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.39 E-value=1.1 Score=40.40 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
.+|++.|.|+||.||....+-+.+. .++|+.+. +|.+.+.+...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 48 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA--GWDLALVA--RSQDALEALAA 48 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 4678999999999999999998875 56777754 45555444433
No 103
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.81 Score=41.56 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=31.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
|++.|.|+||.||.....-+.+. .++|+.+. +|.+.+.++.+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 50 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQ--GAHVIVSS--RKLDGCQAVAD 50 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 68999999999999999999876 56888775 34444444433
No 104
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.34 E-value=0.98 Score=41.27 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=35.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~ 127 (369)
|++.|.|+||.||......+.++ .++|+.+ .+|.+.+.+...+...+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~ 53 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAE--GARVVIA--DIKPARARLAALEIGPA 53 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHhCCc
Confidence 68999999999999999999886 5777765 35667666666655443
No 105
>PRK08589 short chain dehydrogenase; Validated
Probab=93.31 E-value=0.72 Score=42.99 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
.|++.|.|+||.||..+.+-+.+. .++|+.+.- | +.+.+.+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~--G~~vi~~~r--~-~~~~~~~~ 47 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE--GAYVLAVDI--A-EAVSETVD 47 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeC--c-HHHHHHHH
Confidence 468999999999999999988876 577877643 3 44444333
No 106
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=93.28 E-value=0.94 Score=41.59 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=41.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
|.+.|.|+||.||.++.+-+.+. .++|+++. .+..+.+.+++++...+...+ .|-.+.+.+++.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEA--GCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPAL 75 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 68999999999999999988875 67888763 333355555665544443332 343444444443
No 107
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=93.23 E-value=0.96 Score=44.23 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=45.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC--CEEEEcCchhHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP--QVVAVRNESLLDEIK 141 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP--~~V~v~de~~~~~l~ 141 (369)
.|-+.|-|+|..||..|-+.+.+. .++|+.. +++.++|.+++.++.. -++...|-.+.+.++
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~--G~~vvl~--aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~ 69 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEA--GAKVVLA--ARREERLEALADEIGAGAALALALDVTDRAAVE 69 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHC--CCeEEEE--eccHHHHHHHHHhhccCceEEEeeccCCHHHHH
Confidence 367999999999999999999886 7777764 4678999999999984 233334444444433
No 108
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.19 E-value=0.96 Score=41.36 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=29.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
+++.|.|+||.||....+-+.+. .++|+++. +|.+.+.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~--g~~Vi~~~--r~~~~~~~ 40 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA--GAQLVLAA--RNETRLAS 40 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 57999999999999999888765 46788775 34444433
No 109
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.19 E-value=1.1 Score=41.81 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=41.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
.|++.|.|+||.||.....-+.+. .++|+++. +|.+.+.+.......+...+ .|-.+.+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~ 67 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA--GHRVVGTV--RSEAARADFEALHPDRALARLLDVTDFDAIDA 67 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC--cCEEEEEe--CCHHHHHHHHhhcCCCeeEEEccCCCHHHHHH
Confidence 468999999999999999988775 57777754 56677766655554433332 34333334443
No 110
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.18 E-value=0.14 Score=51.44 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCCHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNIT 115 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaag~Nv~ 115 (369)
.+.||+|+|+||.+|...++++.+ ||. ++++.++..++..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~-~~l~~las~rsaG 47 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPY-SSLKMLASARSAG 47 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCc-ceEEEEEccCCCC
Confidence 345899999999999999999998 776 8899888776643
No 111
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.16 E-value=0.13 Score=50.13 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 71 ~~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|-.-.+|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~--g~~V~~~d~ 47 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFL--NQTVIGLDN 47 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeC
Confidence 33334578999999999999999999876 578999864
No 112
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.14 E-value=0.73 Score=42.53 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=27.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|++.|.|+||.||.++.+-+.+. .++|+.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~--G~~Vi~~~ 41 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA--GADVLIAA 41 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 368999999999999999998875 57887765
No 113
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.13 E-value=0.94 Score=41.71 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||.+..+-+.+. .++|+.+ .+|.+.+.+....+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~l~~~~ 49 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE--GARVAVL--DKSAAGLQELEAAH 49 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHhhc
Confidence 478999999999999999988876 6777765 34556655544333
No 114
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.12 E-value=0.53 Score=43.44 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~ 118 (369)
.+|+|.|+|+||.||...+.-+.+. .++|++++ +|.+.+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~--R~~~~~~ 55 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGV--RDVDKAK 55 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEe--cCHHHHH
Confidence 3578999999999999999988775 68888875 4444443
No 115
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.09 E-value=0.34 Score=41.36 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=32.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~N 113 (369)
.||+|.|+||=.|+...+.+.++|+ |++++....++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-FELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-EEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-cEEEEEEecCC
Confidence 3799999999999999999999755 99999988776
No 116
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.09 E-value=0.73 Score=49.79 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
..|.|.|+|+||.||....+-+.+. .++|++++ +|.+.+.+...
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~--Rn~ekl~~l~~ 122 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKL--GFRVRAGV--RSAQRAESLVQ 122 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHH
Confidence 4478999999999999999888765 68888764 56666554433
No 117
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.06 E-value=1.5 Score=39.79 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
.|+|.|.|+||.||....+-+.+. .++|+++. +|.+.+.+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~ 49 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA--GAKVVLAS--RRVERLKEL 49 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHH
Confidence 478999999999999999999875 56777664 344554433
No 118
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=93.04 E-value=1.1 Score=40.27 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
+|.+.|.|+||.||.+..+.+.+. .++|+.+. .+|.+.+.+...+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~ 45 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQE--GYTVAVNY-QQNLHAAQEVVNL 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHH
Confidence 468999999999999999998875 57776543 3455555444433
No 119
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=93.04 E-value=1.1 Score=40.58 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=49.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH---HHhhCCCEEEE-cCchhHHHHHHHHhcCCCCc
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ---~~~FkP~~V~v-~de~~~~~l~~~l~~~~~~~ 151 (369)
.|++.|.|+||.||....+-+.++ .++|+.+ ..++-+.+.++ +++...+...+ .|-...+.+.+.+..
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~--g~~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----- 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE--GAKVVIN-YNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEE----- 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCEEEEE-cCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH-----
Confidence 478999999999999999988876 5677654 34444444443 33333333333 344444444443321
Q ss_pred eEEecHHHHHHHhcCCCCCEEEEeccCc
Q 017567 152 EILAGEQGVIEAARHPDAVTVVTGIVGC 179 (369)
Q Consensus 152 ~v~~G~~gl~~~~~~~~~D~Vv~AIvG~ 179 (369)
+.+ ...++|.|+.. +|.
T Consensus 78 --------~~~--~~~~id~vi~~-ag~ 94 (247)
T PRK12935 78 --------AVN--HFGKVDILVNN-AGI 94 (247)
T ss_pred --------HHH--HcCCCCEEEEC-CCC
Confidence 111 12468888877 444
No 120
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=92.93 E-value=1.4 Score=39.49 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
.|++.|.|+||.||.+..+-+.++ .+.|+. . .++.+.+.++..+...
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~--g~~v~~-~-~~~~~~~~~~~~~~~~ 52 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ--GAIVGL-H-GTRVEKLEALAAELGE 52 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEE-E-cCCHHHHHHHHHHhCC
Confidence 368999999999999999888765 455543 3 3567777776665543
No 121
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.92 E-value=0.88 Score=41.34 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=39.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec-CCHHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag-~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
.|++.|.|+||.||..+.+-+.+. .++|+.+.-. .+.+.+.++.+++..+...+ .|-...+.+.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 378999999999999999988875 5677665421 12334444555554443322 34333334443
No 122
>PRK12742 oxidoreductase; Provisional
Probab=92.90 E-value=0.61 Score=41.75 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~ 128 (369)
.|+|.|.|+||.||..+.+.+.+. .++|+.+ ..++.+.+.+...++....
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~l~~~~~~~~ 55 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD--GANVRFT-YAGSKDAAERLAQETGATA 55 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEe-cCCCHHHHHHHHHHhCCeE
Confidence 368999999999999999988875 5677654 3445666666666655443
No 123
>PRK12744 short chain dehydrogenase; Provisional
Probab=92.90 E-value=1.3 Score=40.61 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=39.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec--CCHH---HHHHHHHhhCCCEEE-EcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--SNIT---LLADQVKRFKPQVVA-VRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag--~Nv~---lL~eQ~~~FkP~~V~-v~de~~~~~l~~ 142 (369)
|++.|.|+||.||..+.+.+.+. .++|+.+... ++.+ .+.++.+.+..+... ..|-...+.+++
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~--G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQ--GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHC--CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHH
Confidence 68999999999999999999875 5677666542 2333 333444444444332 234444444444
No 124
>PRK06194 hypothetical protein; Provisional
Probab=92.90 E-value=1.1 Score=41.66 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEEE-cCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F---kP~~V~v-~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||....+-+.+. .++|+.+. ++.+.+.+...+. ..+...+ .|-.+.+.+.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL--GMKLVLAD--VQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEe--CChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 468999999999999999988876 56776553 3555555544443 3343322 444444444443
No 125
>PRK12827 short chain dehydrogenase; Provisional
Probab=92.89 E-value=1 Score=40.23 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=33.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee--cCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA--GSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa--g~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||....+-+.++ .++|+.+.- .++.+.+.+...++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~ 54 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD--GADVIVLDIHPMRGRAEADAVAAGI 54 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEcCcccccHHHHHHHHHHH
Confidence 368999999999999999888876 567777642 34555555444443
No 126
>PRK09135 pteridine reductase; Provisional
Probab=92.85 E-value=0.93 Score=40.56 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
++|.|.|+||.||.+..+-+.++ .++|+++. +++.+.+.+
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~-r~~~~~~~~ 46 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA--GYRVAIHY-HRSAAEADA 46 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHH
Confidence 68999999999999999998876 68888775 333344433
No 127
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.81 E-value=0.97 Score=40.99 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=30.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
.|++.|.|+||.||.++.+-+.+. .++|+.+. +|.+.+.+..
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~ 46 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA--GADVVLAA--RTAERLDEVA 46 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHH
Confidence 478999999999999999988876 56776654 3444443333
No 128
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.80 E-value=0.18 Score=49.98 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~ 112 (369)
+|+|.|+|+||+||..+...+.+. .++|++++-..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~--G~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAE--GHYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhC--CCEEEEEEecc
Confidence 368999999999999999999885 68999987443
No 129
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.78 E-value=0.16 Score=50.28 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=31.3
Q ss_pred eeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSN 113 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaag~N 113 (369)
+||+|+|+||.+|...++.+.+ ||. |+|++++..++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~-~~l~~l~s~~~ 39 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPV-DKLRLLASARS 39 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCc-ceEEEEEcccc
Confidence 5899999999999999999998 665 89999976544
No 130
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.77 E-value=1.1 Score=40.07 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=31.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.|+|.|+|+||.||.....-+.++ .++|++++ +|.+.+.+...+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD--GAEVIVVD--ICGDDAAATAEL 49 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 468999999999999998887765 57887764 444444444433
No 131
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.87 Score=41.59 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=32.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+...+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 52 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA--GAQVAIAA--RHLDALEKLADE 52 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEc--CCHHHHHHHHHH
Confidence 68999999999999999999876 56776643 455555544443
No 132
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.73 E-value=1.9 Score=41.10 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=32.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|++.|.|+||-||....+.+.++ .++|+.++ +|.+.+.+...+
T Consensus 41 k~vlItGasggIG~~la~~La~~--G~~Vi~~~--R~~~~l~~~~~~ 83 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR--GATVVAVA--RREDLLDAVADR 83 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 68999999999999999999886 57776653 455665554443
No 133
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.72 E-value=1.2 Score=39.66 Aligned_cols=107 Identities=26% Similarity=0.343 Sum_probs=64.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH------hhCCCEEEEcCchhHHHHHHHHhcCCCCc
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEEKP 151 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~------~FkP~~V~v~de~~~~~l~~~l~~~~~~~ 151 (369)
||+|.|. |-||+..++.+.+. ..++|+++..-...+.++.+.+ .|++. +...+.. +.-.+..+
T Consensus 2 kv~I~G~-GriGr~v~~~~~~~-~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~-v~~~~~~--------l~i~g~~i 70 (149)
T smart00846 2 KVGINGF-GRIGRLVLRALLER-PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGE-VEVDEDG--------LIVNGKKI 70 (149)
T ss_pred EEEEECc-CHHHHHHHHHHHhC-CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCc-EEEeCCE--------EEECCEEE
Confidence 7999998 99999999998876 4699999876567888877766 22222 2211111 11011223
Q ss_pred eEEecHHHHHHHh-cCCCCCEEEEeccCccCcHHHH-HHHHcC-Cceee
Q 017567 152 EILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTV-AAIEAG-KDIAL 197 (369)
Q Consensus 152 ~v~~G~~gl~~~~-~~~~~D~Vv~AIvG~aGL~pt~-~Ai~~g-K~iaL 197 (369)
.++. +....++- ....+|+||.+ +|..+-.... .-+++| |+|.+
T Consensus 71 ~~~~-~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 71 KVLA-ERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred EEEe-cCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEEe
Confidence 3332 22222221 23468999999 8877666654 456667 55543
No 134
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.66 E-value=0.94 Score=40.74 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=35.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~ 127 (369)
|++.|.|+||.||....+-+.+. .++|+.+ .+|.+.+.+..+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~ 53 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAE--GARVAIT--GRDPASLEAARAELGES 53 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEe--cCCHHHHHHHHHHhCCc
Confidence 68999999999999999998876 4677655 45667777666666443
No 135
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.64 E-value=0.57 Score=49.04 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=40.5
Q ss_pred ccccCCCCCCeeEEEEecCChHhHHHHHHHHhC-------CCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 67 ETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEH-------EDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 67 ~~~~~~~~~~kkI~ILGSTGSIGtqTLdVI~~~-------pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
|+..++|..|-||+|.|++|.||...+--+... +---+++-+ ..|-+++..++.++.
T Consensus 91 ~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli--D~~~~~a~G~amDL~ 154 (444)
T PLN00112 91 EEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS--ERSKQALEGVAMELE 154 (444)
T ss_pred chhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE--cCCcchhHHHHHHHH
Confidence 334689999999999999999999998877653 111244433 457777777766553
No 136
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=92.62 E-value=1.8 Score=39.37 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=59.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..++.+.+.. .++|++.+ ++-+++ +.++++..+.+...++.. +.
T Consensus 138 ~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~---~~--------------- 194 (320)
T cd05286 138 DTVLVHAAAGGVGLLLTQWAKAL--GATVIGTV--SSEEKA-ELARAAGADHVINYRDED---FV--------------- 194 (320)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEc--CCHHHH-HHHHHCCCCEEEeCCchh---HH---------------
Confidence 58999999999999999999887 57777765 344444 334667766554332211 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.+.++.....+|.|++...| ..+...+.+++.+-++
T Consensus 195 -~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~ 231 (320)
T cd05286 195 -ERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTL 231 (320)
T ss_pred -HHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEE
Confidence 112233333458999988766 5666667777655443
No 137
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.61 E-value=1.1 Score=43.21 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=61.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.|.|+ |+||..++.+.+.. .. +|++... +-+++ ++++++..+.+.-.++... .+.
T Consensus 171 ~~VlV~G~-G~vG~~aiqlak~~--G~~~Vi~~~~--~~~~~-~~a~~lGa~~vi~~~~~~~---~~~------------ 229 (343)
T PRK09880 171 KRVFVSGV-GPIGCLIVAAVKTL--GAAEIVCADV--SPRSL-SLAREMGADKLVNPQNDDL---DHY------------ 229 (343)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEeC--CHHHH-HHHHHcCCcEEecCCcccH---HHH------------
Confidence 58999996 99999999999876 45 4555443 33444 5778888877653322211 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLA 198 (369)
.+ ....+|+|++++-+-..+...+.+++.|-++.+.
T Consensus 230 -----~~--~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 230 -----KA--EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -----hc--cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00 1124899999965446788888888888776554
No 138
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=92.55 E-value=0.28 Score=48.53 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=43.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC----CHHHHHHHHHhhCCCEEEE
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS----NITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~----Nv~lL~eQ~~~FkP~~V~v 131 (369)
+|.|+|+||-.|+.-.+.+. ..|+|++++..+ |.+.+.+.+++.+|+.|.-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~---~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 2 KILITGANGQLGTELRRALP---GEFEVIATDRAELDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC---CCceEEeccCccccccChHHHHHHHHhhCCCEEEE
Confidence 39999999999998777765 579999998765 6788999999999998863
No 139
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=92.53 E-value=0.17 Score=48.84 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=27.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+|+|.|+|+||+||.....-+.+.. .++|+++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEe
Confidence 4689999999999999999887642 48999986
No 140
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.53 E-value=0.81 Score=41.06 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=41.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
|++.|.|+||.||..+...+.+. .++|+.++ +|.+.+.+...+++... ...|-...+.+++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~ 70 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQR--GARVVAAA--RNAAALDRLAGETGCEP-LRLDVGDDAAIRA 70 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhCCeE-EEecCCCHHHHHH
Confidence 68999999999999999999886 56777654 56667766666655433 3344444333433
No 141
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.52 E-value=1 Score=41.29 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=40.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEE-EEcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVV-AVRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~l---L~eQ~~~FkP~~V-~v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||....+.+.++ .++|+.+.. ++-+. +.+++++-..+.. ...|-.+.+.+.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~--g~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 77 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAH--GFDVAVHYN-RSRDEAEALAAEIRALGRRAVALQADLADEAEVRAL 77 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 358999999999999999999875 467776543 34333 3444433233332 23454445555544
No 142
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.50 E-value=1.2 Score=39.69 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
+|+|.|.|+||.||.....-+.+. .++|+.+. .++-+.+.+...
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~--g~~v~~~~-~r~~~~~~~~~~ 48 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE--GAKVVIAY-DINEEAAQELLE 48 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHH
Confidence 468999999999999999888765 57877662 234444444333
No 143
>PLN02240 UDP-glucose 4-epimerase
Probab=92.48 E-value=0.85 Score=43.66 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=27.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|+|.|.|+||.||....+-+.+. .++|+++.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLA--GYKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 68999999999999999998875 57898885
No 144
>PRK06128 oxidoreductase; Provisional
Probab=92.48 E-value=1.3 Score=42.08 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=40.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC---CHHHHHHHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---NITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~---Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
|++.|.|+||.||....+-+.+. .++|+...-.. +.+.+.+.++.+..+...+ .|-.+.+.+++.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 78999999999999999999875 56776543322 2344555555554444333 444444444443
No 145
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.84 Score=41.32 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=32.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
+|++.|.|+||.||..+.+-+.+. .++|+++. +|.+.+.+...
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 43 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAA--RDVERLERLAD 43 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEe--CCHHHHHHHHH
Confidence 468999999999999999998875 57777764 44555544333
No 146
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=92.47 E-value=1.6 Score=41.75 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=34.6
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
..|++.|.|+||.||..+...+.+. .++|+.+. +|.+.+.+...+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~--r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR--GWHVIMAC--RNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHh
Confidence 3578999999999999999998876 47776653 5666665555544
No 147
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.45 E-value=1.2 Score=41.14 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||..+.+-+.+. .++|+. .+.+|.+.+.+.+++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~-~~~~~~~~~~~~~~~~ 53 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS--GVNIAF-TYNSNVEEANKIAEDL 53 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEE-EcCCCHHHHHHHHHHH
Confidence 468999999999999999988875 566654 4556776665555443
No 148
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.52 Score=42.83 Aligned_cols=64 Identities=19% Similarity=0.091 Sum_probs=44.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~ 147 (369)
++|.|+|+||.||+.+++-+.+. .++|++++ +|-+.+.... ... -+...|-...+.+...+.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~--~~~v~~~~--r~~~~~~~~~--~~v-~~~~~d~~~~~~l~~a~~G~ 64 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR--GHEVRAAV--RNPEAAAALA--GGV-EVVLGDLRDPKSLVAGAKGV 64 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC--CCEEEEEE--eCHHHHHhhc--CCc-EEEEeccCCHhHHHHHhccc
Confidence 36999999999999999999987 78888876 5666665554 332 23334444555566655543
No 149
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.40 E-value=0.94 Score=43.23 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=31.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
+||+|+|+||=+|+-.++=..+. .-+|+|++ +|-.++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAiv--Rn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIV--RNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEE--eChHhccc
Confidence 47999999999999998876654 68899988 66677754
No 150
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.34 E-value=0.22 Score=50.00 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=31.2
Q ss_pred CeeEEEEecCChHhHHHHHHHH--hCCCceEEEEEeecCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVA--EHEDKFRVVALAAGSN 113 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~--~~pd~F~VvaLaag~N 113 (369)
|.+|+|+||||.+|...++.+. .||. ++++.++..+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~-~~l~~v~s~~~ 42 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPV-GTLHLLASSES 42 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCc-eEEEEEECccc
Confidence 3689999999999999999999 6776 78888876543
No 151
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=92.30 E-value=1.2 Score=44.99 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=83.0
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCc
Q 017567 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (369)
Q Consensus 72 ~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~ 151 (369)
.+...++|.|+|++|.+|+.++.+.+... |..+.-+|..+-..| ++++..+.|.=.++..+ .+.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l---~k~lGAd~vvdy~~~~~---~e~-------- 217 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLEL---VKKLGADEVVDYKDENV---VEL-------- 217 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHH---HHHcCCcEeecCCCHHH---HHH--------
Confidence 55666799999999999999999999874 666666666554444 67777777653333211 111
Q ss_pred eEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhH
Q 017567 152 EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAI 231 (369)
Q Consensus 152 ~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAI 231 (369)
++... ...+|+|++.+.|. -+...+..+..+.+.+ -+...|......-.. | .
T Consensus 218 --------~kk~~-~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~-----~i~~~~~~~~~~~~~--------~-----~ 269 (347)
T KOG1198|consen 218 --------IKKYT-GKGVDVVLDCVGGS-TLTKSLSCLLKGGGGA-----YIGLVGDELANYKLD--------D-----L 269 (347)
T ss_pred --------HHhhc-CCCccEEEECCCCC-ccccchhhhccCCceE-----EEEeccccccccccc--------c-----c
Confidence 11112 34699999998886 5555555555554443 334444443221111 1 1
Q ss_pred HHhhcCCCCCccceEEEeecCCCCCCCC
Q 017567 232 FQCIQGLPEGALRRIILTASGGAFRDWP 259 (369)
Q Consensus 232 fQ~L~g~~~~~v~kiiLTASGGPFr~~~ 259 (369)
|| . ...++...++..|.+|+...
T Consensus 270 ~~----~-~~~~~~~~~~~~~~~~~~~~ 292 (347)
T KOG1198|consen 270 WQ----S-ANGIKLYSLGLKGVNYRWLY 292 (347)
T ss_pred hh----h-hhhhhheeeeeeccceeeee
Confidence 22 1 23456677777777776543
No 152
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.28 E-value=2.9 Score=41.89 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=38.6
Q ss_pred EeecccchhhHHHhhcCCCCCccceEEEeecCCCCCCCChhhhccCCHHHhhcCCCCCCCCccceehhhhcchhHH
Q 017567 221 ILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLE 296 (369)
Q Consensus 221 IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGPFr~~~~e~l~~vT~~dALkHP~W~MG~KITIDSATmmNKgLE 296 (369)
.+|.|.-..| |+.+.+. ..-|++|+ |+|.++.+++...- -+-|+=- .|+-+|-..+-||--|
T Consensus 343 ~~~l~~~~~A-~~~~~~~---~~gKvvl~----~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~ 404 (410)
T cd08238 343 IGGLNAAAET-TLNLPGI---PGGKKLIY----TQKPLPLTGIEELA----DKEPEEP--AAIVLENGGIWNKEAE 404 (410)
T ss_pred EecHHHHHHH-HHHhhcc---CCceEEEE----CCCCCCCchhHhhH----hhcCCCh--HHHHHhcCCcCCHHHH
Confidence 4566654444 6666632 34578887 57777776665432 2334322 6888999999998544
No 153
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=92.28 E-value=0.46 Score=45.81 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=27.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK--GYEVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC--CCEEEEEec
Confidence 58999999999999999988775 678888753
No 154
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.24 E-value=1.4 Score=41.28 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=60.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-..+... .+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~--s~~~-~~~l~~~Ga~~vi~~~~~~~---~~-------------- 202 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAG--SDDK-VAWLKELGFDAVFNYKTVSL---EE-------------- 202 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeCCCccH---HH--------------
Confidence 58999999999999999999986 567776653 2233 35566777776654332211 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++.. ..+|+|++.+.| ..+...+.+++.+=++.
T Consensus 203 --~v~~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 203 --ALKEAAP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred --HHHHHCC-CCcEEEEECCCH-HHHHHHHHhhccCCEEE
Confidence 1222222 358999998766 56666777776654443
No 155
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.23 E-value=1.3 Score=40.42 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=38.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH---HHHhhCCCEEEE-cCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e---Q~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
|++.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+ ++++...+...+ .|-...+.+++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFARE--GAKVVVGA--RRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 68999999999999999988876 56777664 34444444 444433333332 34444444443
No 156
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.15 E-value=1.3 Score=40.92 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=29.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
|.+.|.|+||.||.+..+-+.+. .++|++++ ++.+.+.+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 42 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK--GYLVIATM--RNPEKQEN 42 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC--CCEEEEEe--CCHHHHHH
Confidence 57999999999999999988875 68887764 34444433
No 157
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.11 E-value=1.4 Score=40.36 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=33.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+.++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~--r~~~~~~~~~~~~ 51 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE--GAAVALAD--LDAALAERAAAAI 51 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 468999999999999999999876 56777654 4555555555444
No 158
>PRK07904 short chain dehydrogenase; Provisional
Probab=92.08 E-value=2.1 Score=39.76 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.6
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+.+|+|.|.|+||-||....+-+.+.. .++|+.++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~ 40 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAA 40 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEe
Confidence 457789999999999999998876642 37777653
No 159
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.07 E-value=1.3 Score=39.87 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~ 43 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE--GAKVAVFD--LNREAAEKV 43 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEec--CCHHHHHHH
Confidence 368999999999999999988875 67776654 344444433
No 160
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.06 E-value=2.1 Score=39.28 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=32.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.+++.|.|+||.||.....-+.+. .++|++++ +|.+.+.+...+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 48 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA--GARLLLVG--RNAEKLEALAAR 48 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 357999999999999999988875 67887765 455555444333
No 161
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.01 E-value=1.1 Score=40.56 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|++.|.|+||.||....+.+.+. .++|+.++-
T Consensus 16 k~vlItGas~~IG~~la~~l~~~--G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAK--GARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC
Confidence 68999999999999999998875 678876653
No 162
>PRK07832 short chain dehydrogenase; Provisional
Probab=91.99 E-value=1.5 Score=40.66 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=31.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|++.|.|+||.||......+.+. .++|+.+ ++|.+.+.+.+.+
T Consensus 1 k~vlItGas~giG~~la~~la~~--G~~vv~~--~r~~~~~~~~~~~ 43 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ--GAELFLT--DRDADGLAQTVAD 43 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHH
Confidence 47999999999999999998875 5777654 3455655544444
No 163
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.98 E-value=1.8 Score=39.92 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=30.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
|++.|.|+||.||....+-+.+. .++|+++. ++.+.+.+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 46 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAA--GAAVMIVG--RNPDKLAA 46 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHH
Confidence 68999999999999999988875 67887764 34444433
No 164
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.94 E-value=0.9 Score=41.14 Aligned_cols=64 Identities=9% Similarity=0.225 Sum_probs=39.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE-EEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~ 142 (369)
||++.|.|+||.||.+..+-+.++ .++|+.++ ++..+.+.+...+...+.. ...|-...+.++.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~--g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEK--GTHVISIS-RTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhc--CCEEEEEe-CCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 478999999999999999988775 57787764 3322445544444444332 2234333444443
No 165
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.91 E-value=0.46 Score=50.62 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=40.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEE-EEeecCCHHHHHHHHHhhCCCEEEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVV-ALAAGSNITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~Vv-aLaag~Nv~lL~eQ~~~FkP~~V~v 131 (369)
+||.|.|+||+||+...+.+.+. .++|. +..--.+.+.+.+.+++++|++|.=
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~--g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih 434 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQ--GIAYEYGKGRLEDRSSLLADIRNVKPTHVFN 434 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhC--CCeEEeeccccccHHHHHHHHHhhCCCEEEE
Confidence 57999999999999999988765 46663 3222356777888888899998873
No 166
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.86 E-value=1.7 Score=41.27 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=35.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
|++.|.|+||.||..+...+.+. .++|+.+ ++|.+.+.+..+++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHAR--GAKLALV--DLEEAELAALAAELG 54 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhc
Confidence 68999999999999999999876 4666654 357777777766664
No 167
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.82 E-value=2.1 Score=40.75 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=58.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|++|.+|..++.+.+.. .. +|++.+. +-+++....+++..+.+.-.++.. +.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~--s~~~~~~~~~~lGa~~vi~~~~~~---~~~------------- 215 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICG--SDEKCQLLKSELGFDAAINYKTDN---VAE------------- 215 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcC--CHHHHHHHHHhcCCcEEEECCCCC---HHH-------------
Confidence 68999999999999999998876 45 5776543 334433323347766655433221 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++.. ..+|+|+++..|. .+.-.+.+++.+=++.
T Consensus 216 ---~i~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 216 ---RLRELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHII 251 (345)
T ss_pred ---HHHHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEE
Confidence 1222222 3589999976654 3566677776655543
No 168
>PRK09242 tropinone reductase; Provisional
Probab=91.82 E-value=1.7 Score=39.69 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=32.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|++.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+...+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~ 52 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGL--GADVLIVA--RDADALAQARDE 52 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHH
Confidence 68999999999999999999875 56776664 455555544443
No 169
>PLN02427 UDP-apiose/xylose synthase
Probab=91.80 E-value=0.27 Score=48.35 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=29.0
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
..+++|.|.|+||+||.+.++-+.+. ..++|+++.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~-~g~~V~~l~ 46 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTE-TPHKVLALD 46 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhc-CCCEEEEEe
Confidence 44578999999999999999988765 247899886
No 170
>PLN02572 UDP-sulfoquinovose synthase
Probab=91.80 E-value=0.77 Score=47.09 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~--G~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKR--GYEVAIVD 78 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe
Confidence 367999999999999999988875 57888863
No 171
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.79 E-value=1.4 Score=43.15 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH---HHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL---ADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL---~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
.|+|+|.|+||.||..+.+-+.+. .++|+.++ +|-+.+ .+++++...+...+ .|-.+.+.+++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~--R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR--GAKVVLLA--RGEEGLEALAAEIRAAGGEALAVVADVADAEAVQA 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHH
Confidence 368999999999999999988875 57777654 444444 44455544444332 44444444444
No 172
>PRK06483 dihydromonapterin reductase; Provisional
Probab=91.75 E-value=1.8 Score=39.04 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=39.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
+|++.|.|+||.||..+..-+.+. .++|+.+. +|-+.+.+.+++.... +...|-.+.+.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~ 63 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ--GQPVIVSY--RTHYPAIDGLRQAGAQ-CIQADFSTNAGIMA 63 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC--CCeEEEEe--CCchhHHHHHHHcCCE-EEEcCCCCHHHHHH
Confidence 468999999999999999988875 67887754 3334444555544422 23344444444443
No 173
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.70 E-value=0.58 Score=45.92 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=40.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~ 128 (369)
.+++++|.|||+=||...-+.+.++ .|.|+-++ ++.++|.++.++..=++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~--g~~liLva--R~~~kL~~la~~l~~~~ 54 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR--GYNLILVA--RREDKLEALAKELEDKT 54 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CcHHHHHHHHHHHHHhh
Confidence 4578999999999999999999987 56666544 67898888888877555
No 174
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.69 E-value=1.8 Score=43.38 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=67.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCC--CceEEEEEeecCCHHHHHHHHH------hhCCCEEEEcCchhHHHHHHHHhcCCC
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~p--d~F~VvaLaag~Nv~lL~eQ~~------~FkP~~V~v~de~~~~~l~~~l~~~~~ 149 (369)
||+|.|. |=||+..++++.+.+ ++|+|+++.--...+-++.+.+ +|+- -|...+.. +.-.+.
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~-~v~~~~~~--------l~v~g~ 70 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPG-EVKVDGDC--------LHVNGD 70 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCC-cEEEeCCE--------EEECCe
Confidence 5999999 999999999988765 5799999976556665554443 2211 11111110 000012
Q ss_pred CceEEecHHHHHHHh-cCCCCCEEEEeccCccCcHHHHHHHHcC-Cceee
Q 017567 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (369)
Q Consensus 150 ~~~v~~G~~gl~~~~-~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaL 197 (369)
.++++.- ....++- ...++|+|+.+.-.+.-.+-...++++| |.|-+
T Consensus 71 ~i~v~~~-~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 71 CIRVLHS-PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred EEEEEEc-CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 2334322 2233322 2347999999988888888888999999 44444
No 175
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.69 E-value=1.8 Score=39.46 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
.|++.|.|+||.||....+.+.++ .++|+.+. +|.+.+.+...
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~ 53 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA--GAHVLVNG--RNAATLEAAVA 53 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--CCHHHHHHHHH
Confidence 568999999999999999998875 57777653 34444444333
No 176
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=91.65 E-value=0.54 Score=45.23 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=26.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
||+|.|.|+||+||+...+-+.+. .++++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~--g~~~v~~~~ 33 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINE--TSDAVVVVD 33 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHc--CCCEEEEEe
Confidence 478999999999999999998864 355555443
No 177
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.65 E-value=1.3 Score=42.00 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=30.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
|+|.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~--G~~vi~~~--r~~~~~~~ 55 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAK--GAHVVLAV--RNLDKGKA 55 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 68999999999999999988876 56776643 45555443
No 178
>PRK07201 short chain dehydrogenase; Provisional
Probab=91.61 E-value=0.51 Score=49.44 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=36.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
+|.|.|+||+||...++-+.+++..++|++++-......+.++...+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~ 48 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYW 48 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhc
Confidence 69999999999999999998766789999998655555555544333
No 179
>PRK06198 short chain dehydrogenase; Provisional
Probab=91.57 E-value=1.4 Score=40.10 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=24.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVAL 108 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaL 108 (369)
.|++.|.|+||.||.+..+.+.+. .++ |+.+
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~--G~~~V~~~ 37 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER--GAAGLVIC 37 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCCeEEEE
Confidence 367999999999999999999875 455 5443
No 180
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.56 E-value=1.9 Score=36.60 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=33.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
.++|+|+|+ |.+|.....-+.+.. -.+|.. . ++|.+.+.+.++++..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v-~-~r~~~~~~~~~~~~~~ 65 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVI-V-NRTLEKAKALAERFGE 65 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEE-E-cCCHHHHHHHHHHHhh
Confidence 468999997 999999999888763 233333 2 4677777777776653
No 181
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.51 E-value=1.3 Score=40.14 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+|.+.|.|+||.||.+..+-+.+. .++|+.+.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~--g~~vi~~~ 33 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAA--GFDLAIND 33 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 367999999999999999999876 56787765
No 182
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=91.51 E-value=2.1 Score=40.21 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=60.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++|++|..++.+.+.. ..+|++++. +-+.. +.++++..+.+.-.++.. +.
T Consensus 140 ~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~v~~~~~~~---~~-------------- 197 (329)
T cd08250 140 GETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCS--SDEKA-EFLKSLGCDRPINYKTED---LG-------------- 197 (329)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeC--cHHHH-HHHHHcCCceEEeCCCcc---HH--------------
Confidence 357999999999999999999987 456766653 33333 344667765554322211 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+.+... ..+|.|++.+.| ..+...+..+..+-++.
T Consensus 198 --~~~~~~~~-~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v 234 (329)
T cd08250 198 --EVLKKEYP-KGVDVVYESVGG-EMFDTCVDNLALKGRLI 234 (329)
T ss_pred --HHHHHhcC-CCCeEEEECCcH-HHHHHHHHHhccCCeEE
Confidence 12222222 358999998655 67777888887665543
No 183
>PRK05650 short chain dehydrogenase; Provisional
Probab=91.47 E-value=2 Score=39.77 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=31.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|+|.|.|+||.||....+.+.+. .++|+.+. ++.+.+.+...+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 43 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE--GWRLALAD--VNEEGGEETLKL 43 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 47999999999999999988876 56776543 455665554443
No 184
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.47 E-value=1.3 Score=39.94 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=41.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
|++.|.|+||.||..+.+-+.+. .++|+.+. .++.+.+.+...++..+..++ .|-...+.+++.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFARE--GARVVVNY-HQSEDAAEALADELGDRAIALQADVTDREQVQAM 70 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCeEEEEc-CCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHH
Confidence 68999999999999999988775 57777544 344555555555555444333 344444444443
No 185
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.42 E-value=1.2 Score=43.10 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=27.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|+|.|.|+||+||.+..+-+.+..+.++|+++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 679999999999999999887754346777764
No 186
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.39 E-value=2.3 Score=38.31 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=40.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH---HhhCCCE-EEEcCchhHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQV-VAVRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~---~~FkP~~-V~v~de~~~~~l~~~ 143 (369)
|+|.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+.. +...++. +...|-...+.+++.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE--GAKVVIAD--LNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 68999999999999999988775 67887763 4444444333 3334443 233454444445443
No 187
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.39 E-value=1.9 Score=39.79 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=40.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEE-EcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F---kP~~V~-v~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||.+..+-+.++ .++|+.+ .++-+.+.++..++ ..+... ..|-.+.+.++..
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~--G~~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA--GATIVFN--DINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEE--eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 368999999999999999988876 5777765 34445554444443 223322 3444444444443
No 188
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=91.38 E-value=1.8 Score=39.11 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|++.|.|+||.||....+.+.+. .++|+.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~ 31 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD--GFAVAVAD 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 57999999999999999988875 56776664
No 189
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.32 E-value=2 Score=39.15 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||.++..-+.+. .++|+.+ ++|.+.+.+...+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~--G~~vvl~--~r~~~~~~~~~~~l 53 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY--GAEIIIN--DITAERAELAVAKL 53 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHH
Confidence 468999999999999999999875 5777754 34555555544443
No 190
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=91.32 E-value=1.1 Score=45.06 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=33.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL 117 (369)
+.||+|+|. |.||+..+..+.++|+ |+++|+...+..+++
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd-~ELVgV~dr~~~~~~ 42 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPD-MELVGVFSRRGAETL 42 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCC-cEEEEEEcCCcHHHH
Confidence 358999997 9999999999998876 999998777644443
No 191
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.25 E-value=2.4 Score=38.23 Aligned_cols=65 Identities=26% Similarity=0.261 Sum_probs=39.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHhhCCCEEE-EcCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVA-VRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~---eQ~~~FkP~~V~-v~de~~~~~l~~~ 143 (369)
.|.+.|.|+||.||..+.+-+.+. .++|+.+.. ++.+... +.+++...+.+. ..|-.+.+.+.+.
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~--G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKD--GFKVVAGCG-PNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAA 71 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcC-CChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 367999999999999999999887 567776543 3333332 333333333332 2444444444443
No 192
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.24 E-value=2.4 Score=38.72 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|+|.|.|+||.||..+.+-+.+. .++|+.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~--g~~vi~~~ 33 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE--GYRVAVAD 33 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 57999999999999999999876 57776653
No 193
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.22 E-value=0.55 Score=44.17 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~N 113 (369)
+|.|.|+||+||...++-+.+.....+|+++.-..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence 488999999999999998887755578999875544
No 194
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=91.20 E-value=2.3 Score=39.13 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=31.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
+++.|.|++|.||..+.+-+.+. .++|+.+ .+|-+.+.+...+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l 44 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK--GARVVIS--SRNEENLEKALKEL 44 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHH
Confidence 36999999999999999988875 5776654 34555555544443
No 195
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.18 E-value=2.4 Score=38.58 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=31.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|++.|.|+||.||....+-+.+. .++|+++. +|-+.+.+...+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~ 45 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA--GDRVLALD--IDAAALAAFADA 45 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 57999999999999999988875 57777765 455555444433
No 196
>PLN02253 xanthoxin dehydrogenase
Probab=91.14 E-value=2.3 Score=39.50 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=32.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|++.|.|+||.||..+.+-+.+. .++|+.+. ++-+.+.+.+.+.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~--G~~v~~~~--~~~~~~~~~~~~~ 62 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKH--GAKVCIVD--LQDDLGQNVCDSL 62 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHh
Confidence 468999999999999999988876 57777653 3344444444443
No 197
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.10 E-value=2.4 Score=40.51 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=60.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|+|+ |.||..++.+.+.. ..+ |+++. ++-+++ +.++++..+.+.-..+...+
T Consensus 165 ~~vlV~G~-G~vG~~~~~~ak~~--G~~~vi~~~--~~~~~~-~~~~~~ga~~~i~~~~~~~~----------------- 221 (339)
T cd08239 165 DTVLVVGA-GPVGLGALMLARAL--GAEDVIGVD--PSPERL-ELAKALGADFVINSGQDDVQ----------------- 221 (339)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEC--CCHHHH-HHHHHhCCCEEEcCCcchHH-----------------
Confidence 58999986 99999999999886 345 76643 344554 45678877665432221111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++.....+|+|+++..+-..+...+..++.+-++.
T Consensus 222 ---~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 222 ---EIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLV 259 (339)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 12233333358999999777666677778887766554
No 198
>PRK05854 short chain dehydrogenase; Provisional
Probab=91.07 E-value=1.7 Score=41.88 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=30.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
.|++.|.|+||.||..+...+.+. .++|+.+ .+|.+++.+.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~--G~~Vil~--~R~~~~~~~~ 54 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA--GAEVILP--VRNRAKGEAA 54 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHH
Confidence 368999999999999999999875 5777654 3455554433
No 199
>PLN02503 fatty acyl-CoA reductase 2
Probab=91.06 E-value=1.5 Score=47.53 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHH-HhCCCceEEEEEeecCC
Q 017567 72 TWDGPKPISVLGSTGSIGTQTLDIV-AEHEDKFRVVALAAGSN 113 (369)
Q Consensus 72 ~~~~~kkI~ILGSTGSIGtqTLdVI-~~~pd~F~VvaLaag~N 113 (369)
.+-..|+|.|.|+||+||+..++-+ +..|+.-+|.+|.=.++
T Consensus 115 ~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 115 EFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred hhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 3444589999999999999999655 56788778999875444
No 200
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.00 E-value=3.1 Score=37.29 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=39.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEEE-cCchhHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~l---L~eQ~~~FkP~~V~v-~de~~~~~l~~~ 143 (369)
.|++.|.|+||.||....+.+.+. .++|+.+. .++-+. +.+.++.+..+...+ .|-...+.+++.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAAD--GFAVAVNY-AGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEec-CCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 368999999999999999998876 56676543 444333 334444444333322 343444444443
No 201
>PRK05993 short chain dehydrogenase; Provisional
Probab=90.99 E-value=2.3 Score=39.70 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
.|+|.|.|+||.||....+-+.+. .++|++++ +|.+.+.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~--G~~Vi~~~--r~~~~~~~l 44 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD--GWRVFATC--RKEEDVAAL 44 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHH
Confidence 368999999999999999888764 67887754 556666544
No 202
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.99 E-value=3 Score=40.39 Aligned_cols=104 Identities=15% Similarity=0.268 Sum_probs=62.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|+|+ |+||..++.+.+.. ..+|+++. ++-+++ +.++++..+.+.-..+...+.+.+.+.. . .+
T Consensus 168 ~~VlV~G~-G~vG~~a~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~Ga~~~i~~~~~~~~~~~~~~~~------~-t~ 234 (349)
T TIGR03201 168 DLVIVIGA-GGVGGYMVQTAKAM--GAAVVAID--IDPEKL-EMMKGFGADLTLNPKDKSAREVKKLIKA------F-AK 234 (349)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCeEEEEc--CCHHHH-HHHHHhCCceEecCccccHHHHHHHHHh------h-cc
Confidence 58999999 99999999999987 34676653 455555 4567888766543322222223322211 0 00
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLA 198 (369)
..|+ ....|.|+.+..+..++.-.+.+++.|=++.+.
T Consensus 235 ~~g~-----d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 235 ARGL-----RSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred cCCC-----CCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 0110 011458888876666676677888777665543
No 203
>PRK12746 short chain dehydrogenase; Provisional
Probab=90.98 E-value=1.7 Score=39.40 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=33.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|++.|.|+||.||....+-+.+. .++|+.+. .+|.+.+.+...++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~--G~~v~i~~-~r~~~~~~~~~~~~ 51 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLAND--GALVAIHY-GRNKQAADETIREI 51 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHHHH
Confidence 68999999999999999988775 56665543 44566666655554
No 204
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.95 E-value=2.9 Score=39.75 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=39.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC--HHHHHHHHHhhCCCEEE-EcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~N--v~lL~eQ~~~FkP~~V~-v~de~~~~~l~~ 142 (369)
|++.|.|+||.||....+-+.++ .++|+.+....+ .+.+.+.++....+... ..|-...+.+.+
T Consensus 47 k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 68999999999999999988876 567765544322 33444444443333322 244444444444
No 205
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.94 E-value=2.6 Score=38.00 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.+++.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+...+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~--G~~Vi~~~--r~~~~~~~~~~~ 50 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE--GVNVGLLA--RTEENLKAVAEE 50 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999988765 56777754 455555554443
No 206
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=90.90 E-value=1 Score=40.51 Aligned_cols=63 Identities=21% Similarity=0.107 Sum_probs=39.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH---HHHhhCCCEEE-EcCchhHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVA-VRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e---Q~~~FkP~~V~-v~de~~~~~l~~~ 143 (369)
|++.|.|+||+||....+-+.+. .++|++++ +|.+.+.+ +.+....+... ..|-...+.++..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 68 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAA--GANVVVND--LGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADM 68 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 57999999999999999998875 56777764 33444433 33333333322 2444444444443
No 207
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.90 E-value=1.4 Score=43.34 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=40.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH---HHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ---~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
.|.+.|.|+||.||..+.+.+.+. .++|+.++ +|-+.|.+. ++++..+..++ .|-.+.+.+++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~--R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 73 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR--GARLVLAA--RDEEALQAVAEECRALGAEVLVVPTDVTDADQVKA 73 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 368999999999999999999886 56776543 566666544 44444444332 34444444443
No 208
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=90.89 E-value=0.31 Score=48.37 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=29.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
||+|+|+||.+|+..++.+.+||+ |+|+++...
T Consensus 2 kVaIvGatG~~G~~L~~~l~~~~~-~~l~~v~~~ 34 (341)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLAKHPY-FELAKVVAS 34 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-ceEEEEEEC
Confidence 799999999999999999999876 899998654
No 209
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=90.89 E-value=0.42 Score=44.47 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=37.0
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeecC-----CHHHHHHHHHhhCCCEEEE
Q 017567 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-----NITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 80 ~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~-----Nv~lL~eQ~~~FkP~~V~v 131 (369)
.|+|+||+||++..+-+.+. .++|+.+.... +.+.|.+..+.++|++|+-
T Consensus 1 lItGa~GfiG~~l~~~L~~~--g~~v~~~~~~~~~Dl~~~~~l~~~~~~~~~d~Vih 55 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL--GFTNLVLRTHKELDLTRQADVEAFFAKEKPTYVIL 55 (306)
T ss_pred CcccCCCcccHHHHHHHHhC--CCcEEEeeccccCCCCCHHHHHHHHhccCCCEEEE
Confidence 38999999999999999875 55666554432 4556777777888987663
No 210
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.88 E-value=0.95 Score=41.03 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=34.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec-CCHHHHHHHHHhhCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQ 127 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag-~Nv~lL~eQ~~~FkP~ 127 (369)
|+|.|.|+||.||....+-+.+. .++|++++-. .+.+.+.+.++...++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~ 52 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLA 52 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 57999999999999999998875 5788876532 1234444555544443
No 211
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.79 E-value=2.7 Score=39.26 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
+|.+.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+..
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~--r~~~~~~~~~ 51 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA--GFPVALGA--RRVEKCEELV 51 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 468999999999999999988875 57777654 3455554443
No 212
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=90.72 E-value=2.6 Score=35.58 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=49.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH---HhhCCCEEEE-cCchhHHHHHHHHhcCCCCce
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~---~~FkP~~V~v-~de~~~~~l~~~l~~~~~~~~ 152 (369)
|.+.|.|+||=||.+..+-..+. ....|+.+.-+.+.+.+.+.+ +....+...+ .|-...+.+++.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~------ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE------ 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH------
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccccccccccccccccccccccccccc------
Confidence 67999999999999999999887 334444443331344444444 4334444444 444444555554321
Q ss_pred EEecHHHHHHHhcCCCCCEEEEe
Q 017567 153 ILAGEQGVIEAARHPDAVTVVTG 175 (369)
Q Consensus 153 v~~G~~gl~~~~~~~~~D~Vv~A 175 (369)
+. .+....|++++.
T Consensus 74 -------~~--~~~~~ld~li~~ 87 (167)
T PF00106_consen 74 -------VI--KRFGPLDILINN 87 (167)
T ss_dssp -------HH--HHHSSESEEEEE
T ss_pred -------cc--cccccccccccc
Confidence 11 233468999987
No 213
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.70 E-value=2.8 Score=38.29 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL 117 (369)
|++.|.|+||.||.++.+.+.+. .++|+.+. .++-+.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~--G~~v~~~~-~~~~~~~ 45 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLRE--GAKVAVLY-NSAENEA 45 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe-CCcHHHH
Confidence 68999999999999999998876 56776543 4444443
No 214
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.66 E-value=1 Score=45.56 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=44.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC----CCEEEEcCchhHHHHHHHHh
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK----PQVVAVRNESLLDEIKEALA 145 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk----P~~V~v~de~~~~~l~~~l~ 145 (369)
+.++|.|.||||+||.-.++.+-+. .|+|.|.+=...-++-.+-.+++. .-.++.+|=.+++.+++++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh
Confidence 5578999999999999999998876 899999775332233333444443 13444455444445555443
No 215
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.65 E-value=2.4 Score=39.11 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=40.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH---HHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL---ADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL---~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
|.+.|.|+|+-||.++...+.+. .++|+.+ ++|.+.+ .+++++...+.+.+ .|-.+.+.+++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~--G~~V~~~--~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARL--GATLILC--DQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 68999999999999999999886 6777664 3455555 44455555444332 44444444444
No 216
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.62 E-value=2.5 Score=37.89 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=31.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~ 122 (369)
.|+|.|.|+||.||....+.+.+. .++|++++ ++-+.+.+..+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~--G~~V~~~~--r~~~~~~~~~~ 47 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKE--GAQVCINS--RNENKLKRMKK 47 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 368999999999999999998875 67888764 33455544433
No 217
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=90.56 E-value=5.3 Score=37.06 Aligned_cols=116 Identities=21% Similarity=0.133 Sum_probs=71.8
Q ss_pred eeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCch-----h-HHHHHHHHhcCCC
Q 017567 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-----L-LDEIKEALANVEE 149 (369)
Q Consensus 77 kkI~ILGS-TGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~-----~-~~~l~~~l~~~~~ 149 (369)
+||+||-| +||-....++-+++..-..+|+++.+++.-....+.++++.-.+..+..++ . -+++.+.+...+.
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47888887 677777777777776656889988776544555688888887776543221 1 1234444444444
Q ss_pred CceEEecHHHHH--HHhcCCCCCEEEEe----ccCccCcHHHHHHHHcCC
Q 017567 150 KPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGK 193 (369)
Q Consensus 150 ~~~v~~G~~gl~--~~~~~~~~D~Vv~A----IvG~aGL~pt~~Ai~~gK 193 (369)
+.-|++|---+. ++.+.+. --++|- ..-+-|..|...|+.+|.
T Consensus 81 D~iv~~~~~~il~~~~l~~~~-~~~iNiHpslLP~yrG~~p~~~ai~~g~ 129 (190)
T TIGR00639 81 DLVVLAGFMRILGPTFLSRFA-GRILNIHPSLLPAFPGLHAVEQALEAGV 129 (190)
T ss_pred CEEEEeCcchhCCHHHHhhcc-CCEEEEeCCcccCCCCccHHHHHHHcCC
Confidence 555666653221 2333222 135554 344889999999999984
No 218
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.55 E-value=2.6 Score=38.50 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=30.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
|++.|.|+||.||.+..+-+.++ .++|+.+. +|.+.+.+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~ 53 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEA--GARVVLSA--RKAEELEEAA 53 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHH
Confidence 68999999999999999998875 45675543 4555554443
No 219
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.46 E-value=2.3 Score=38.36 Aligned_cols=40 Identities=25% Similarity=0.162 Sum_probs=28.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~ 118 (369)
.++|.|.|+||.||.+..+-+.+. .++|+.+ ..++-+.+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~--g~~v~~~-~~~~~~~~~ 45 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKE--GSLVVVN-AKKRAEEMN 45 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHC--CCEEEEE-eCCChHHHH
Confidence 368999999999999999988764 5676553 333434443
No 220
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.43 E-value=2.7 Score=39.04 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.|++.|.|+||.||....+-+.+. ..+|+.+. ++.+.+.+...+
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 52 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA--GANVAVAS--RSQEKVDAAVAQ 52 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999988875 56676654 445555544433
No 221
>PRK08017 oxidoreductase; Provisional
Probab=90.34 E-value=1.6 Score=39.54 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=38.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
|+|.|.|+||.||.+..+.+.+. .++|+++ .+|.+++.+ .++.+...+ ..|-.+.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~--g~~v~~~--~r~~~~~~~-~~~~~~~~~-~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR--GYRVLAA--CRKPDDVAR-MNSLGFTGI-LLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHhHH-HHhCCCeEE-EeecCCHHHHHH
Confidence 57999999999999999999875 4677665 356666543 333443333 234444444444
No 222
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.30 E-value=3.1 Score=38.74 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=32.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.|.+.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+...+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~ 51 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA--GADVILL--SRNEENLKKAREK 51 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHH
Confidence 367999999999999999998876 5777654 3456655544443
No 223
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.29 E-value=2.6 Score=38.87 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=60.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++|++|..++.+.+.. .++|++++... +. .+.++++..+.+....+. +.+
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~----~~~------------- 200 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSP--ER-AALLKELGADEVVIDDGA----IAE------------- 200 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCH--HH-HHHHHhcCCcEEEecCcc----HHH-------------
Confidence 358999999999999999999987 57777765433 33 345567776665432111 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++ ...+|.+++.+.| ..+...+..+..+-++.
T Consensus 201 ---~i~~~--~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v 235 (320)
T cd08243 201 ---QLRAA--PGGFDKVLELVGT-ATLKDSLRHLRPGGIVC 235 (320)
T ss_pred ---HHHHh--CCCceEEEECCCh-HHHHHHHHHhccCCEEE
Confidence 12223 2358999987665 56777777777655443
No 224
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.20 E-value=0.4 Score=45.20 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r 36 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQR--GYTVKATVR 36 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 368999999999999999988876 578888764
No 225
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=90.11 E-value=3 Score=39.92 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=58.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh-hCCCEEEEcC-chhHHHHHHHHhcCCCCceEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRN-ESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~-FkP~~V~v~d-e~~~~~l~~~l~~~~~~~~v~ 154 (369)
.+|.|.|++|.+|..++.+.+.. .++|++.+.. -++ .+.+++ +..+.+.-.+ +... .+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~--~~~-~~~~~~~lGa~~vi~~~~~~~~---~~------------ 212 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGS--DEK-VDLLKNKLGFDDAFNYKEEPDL---DA------------ 212 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCC--HHH-HHHHHHhcCCceeEEcCCcccH---HH------------
Confidence 58999999999999999999986 5677775532 233 334444 6666654322 1111 11
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.+... ..+|.|++.+.| ..+.-.+.+++.+-++.
T Consensus 213 ----~i~~~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 213 ----ALKRYFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred ----HHHHhCC-CCcEEEEECCCH-HHHHHHHHHhccCcEEE
Confidence 1122222 358999997655 56666777776665543
No 226
>PLN00016 RNA-binding protein; Provisional
Probab=90.10 E-value=1.2 Score=43.94 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred CCeeEEEE----ecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 017567 75 GPKPISVL----GSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (369)
Q Consensus 75 ~~kkI~IL----GSTGSIGtqTLdVI~~~pd~F~VvaLaag~ 112 (369)
.+++|.|+ |+||.||....+-+.+. .++|++++-+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~--G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA--GHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHC--CCEEEEEecCC
Confidence 34789999 99999999999988765 68999988543
No 227
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=90.06 E-value=0.51 Score=39.31 Aligned_cols=33 Identities=48% Similarity=0.846 Sum_probs=29.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
||+|+|+||-+|...++.+.++|+ |+++++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~-~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD-FEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC-ceEEEEEec
Confidence 589999999999999999999876 999999553
No 228
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.03 E-value=0.39 Score=51.15 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.+|+|.|.|+||+||+..++-+.+....++|+++.-
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 457899999999999999998887644688998863
No 229
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.97 E-value=0.36 Score=45.13 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=27.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
+|.|+|+||.||...++-+.+. .++|.+++-.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCC
Confidence 5899999999999999988764 6888888743
No 230
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.97 E-value=1 Score=43.34 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~--G~~V~~~~r 38 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSK--GYEVHGIIR 38 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEec
Confidence 57999999999999999998875 578888754
No 231
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=89.95 E-value=1.6 Score=41.49 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r 37 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR--GYTVKATVR 37 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEEC
Confidence 468999999999999999988875 578887754
No 232
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.95 E-value=2.7 Score=42.98 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=24.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|+|.|+|+ |-+|..+.+.+++. .++|+..-
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~--G~~V~~~d 46 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLEL--GARVTVVD 46 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEe
Confidence 468999997 88999999999875 56776643
No 233
>PRK08177 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.86 Score=40.97 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=27.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
+|++.|.|+||.||....+-+.+. .++|++++-
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER--GWQVTATVR 33 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeC
Confidence 478999999999999999888875 678887764
No 234
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.93 E-value=3.3 Score=40.50 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=58.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.||..++.+.+.. ..+|++.+ ++-+++....+++..+.+.-..+. ..+.+
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~--~~~~k~~~~~~~lGa~~vi~~~~~--~~~~~-------------- 219 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH--GCYVVGSA--GSSQKVDLLKNKLGFDEAFNYKEE--PDLDA-------------- 219 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEc--CCHHHHHHHHHhcCCCEEEECCCc--ccHHH--------------
Confidence 58999999999999999999986 46777654 333444322236777666543211 01111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++.. ..+|.|++++.| ..+...+.+++.|-++.
T Consensus 220 --~i~~~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 220 --ALKRYFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIA 255 (348)
T ss_pred --HHHHHCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEE
Confidence 1122222 258899987654 45666677776665554
No 235
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=89.83 E-value=0.34 Score=44.56 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.0
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|.|+|+||+||+...+.+.+. .|+|++++-
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEeC
Confidence 579999999999999988764 589999873
No 236
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=89.74 E-value=2.1 Score=41.43 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=28.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~--G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLEL--GAEVYGYSL 36 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHC--CCEEEEEeC
Confidence 67999999999999999999875 578988863
No 237
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=89.73 E-value=3.8 Score=36.65 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=31.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
+|++.|.|+||.||..+.+-+.+. .++|+.+.-..+ +.+.+..
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~--g~~vi~~~r~~~-~~~~~~~ 44 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLND--GYRVIATYFSGN-DCAKDWF 44 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCcH-HHHHHHH
Confidence 468999999999999999998876 578877754433 4444333
No 238
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.69 E-value=4.2 Score=37.31 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=29.6
Q ss_pred CeeEEEEecCCh-HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 76 PKPISVLGSTGS-IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 76 ~kkI~ILGSTGS-IGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
.|++.|.|+||| ||.....-+.+. .++|+... +|.+.+.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~--G~~V~~~~--~~~~~~~~~ 58 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE--GARVVISD--IHERRLGET 58 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHH
Confidence 478999999996 999999998876 45666533 455555443
No 239
>PRK07023 short chain dehydrogenase; Provisional
Probab=89.65 E-value=0.47 Score=42.97 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
++++.|.|+||.||.+..+-+.+. .++|+.++..
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~--G~~v~~~~r~ 34 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP--GIAVLGVARS 34 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC--CCEEEEEecC
Confidence 357999999999999999998875 6788876543
No 240
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=89.63 E-value=4 Score=38.21 Aligned_cols=94 Identities=23% Similarity=0.343 Sum_probs=59.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.++|.|.|++|++|..++.+.++. .++|++.+.. -+++ +.++++..+.+.-.++.. .+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~v~~~~~~~----~~------------- 204 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGK--ADAA-DYLKKLGAKEVIPREELQ----EE------------- 204 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecC--HHHH-HHHHHcCCCEEEcchhHH----HH-------------
Confidence 358999999999999999999987 5677765433 3333 444667765543222110 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++ ....+|.|++.+.| ..+...+.+++.+-++.
T Consensus 205 ---~~~~~-~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i 240 (326)
T cd08289 205 ---SIKPL-EKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVA 240 (326)
T ss_pred ---HHHhh-ccCCcCEEEECCcH-HHHHHHHHHhhcCCEEE
Confidence 11222 12358999998655 67777888887665543
No 241
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=89.62 E-value=3.8 Score=36.59 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=30.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~e 119 (369)
|.+.|.|+||.||..+.+-+.+. .++|+++.. ++-+.+.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r-~~~~~~~~ 40 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD--GYRVAANCG-PNEERAEA 40 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHH
Confidence 57899999999999999999875 677877654 35555444
No 242
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.62 E-value=4.7 Score=36.95 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=34.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQ 127 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~--Nv~lL~eQ~~~FkP~ 127 (369)
|++.|.|+||.||..+.+-+.+. .++|+.+.-.. ..+.+.++++....+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~l~~~~~~ 59 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQA--GADVALFDLRTDDGLAETAEHIEAAGRR 59 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCc
Confidence 68999999999999999998875 57888765332 234555555544333
No 243
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=89.61 E-value=3.3 Score=39.34 Aligned_cols=93 Identities=18% Similarity=0.306 Sum_probs=59.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|+|++|++|..++.+.+.. ..+|++++ .++ + .+.++++...++...++....+
T Consensus 178 g~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~-~~~--~-~~~~~~~g~~~~~~~~~~~~~~---------------- 235 (350)
T cd08274 178 GETVLVTGASGGVGSALVQLAKRR--GAIVIAVA-GAA--K-EEAVRALGADTVILRDAPLLAD---------------- 235 (350)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEe-Cch--h-hHHHHhcCCeEEEeCCCccHHH----------------
Confidence 358999999999999999999987 46677765 332 2 3455777765443222221111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+......+|.|++.+.| ..+...+.+++.+-++.
T Consensus 236 -----~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v 270 (350)
T cd08274 236 -----AKALGGEPVDVVADVVGG-PLFPDLLRLLRPGGRYV 270 (350)
T ss_pred -----HHhhCCCCCcEEEecCCH-HHHHHHHHHhccCCEEE
Confidence 111222358999988665 56777777777665543
No 244
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.61 E-value=3.8 Score=36.99 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=29.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
|++.|.|+||.||....+-+.+.. .+|+.++ +|.+.+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g--~~v~~~~--r~~~~~~~~ 42 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG--RDLALCA--RRTDRLEEL 42 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC--CEEEEEe--CCHHHHHHH
Confidence 679999999999999999998874 5665543 445544433
No 245
>PLN02214 cinnamoyl-CoA reductase
Probab=89.55 E-value=1.9 Score=42.12 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 458999999999999999988875 688988763
No 246
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.52 E-value=3.1 Score=38.19 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=30.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
.|.+.|.|+||.||.....-+.+. .++|+.++ +|.+.+.+..
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~ 49 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA--GASVAICG--RDEERLASAE 49 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHH
Confidence 368999999999999999888875 56776543 4555554433
No 247
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=89.50 E-value=3.7 Score=37.55 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=26.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|+|.|.|+||.||....+.+.++ .++|+.+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~ 42 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA--GASVVVSD 42 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEe
Confidence 478999999999999999999886 56776543
No 248
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=89.43 E-value=1.4 Score=39.90 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=27.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|++.|.|+||.||.....-+.+. .++|+++.
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~ 43 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARH--GATVILLG 43 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCcEEEEe
Confidence 468999999999999999999875 57887765
No 249
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.41 E-value=2 Score=41.69 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.++|.|.|+||+||....+-+.+. .++|+++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~ 41 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQR--GYTVHATL 41 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe
Confidence 357999999999999999998875 57898864
No 250
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=89.32 E-value=1.3 Score=40.13 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=41.9
Q ss_pred eeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE
Q 017567 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 77 kkI~ILGS-TGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v 131 (369)
+||+++|| +||.+...|+-+++....++++++..++.-..-..-+.+..+....+
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~ 56 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVA 56 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEec
Confidence 58999975 56889999999998888899999998876655556666666655443
No 251
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.12 E-value=0.52 Score=48.39 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.++||.|.|+||+||...++-+.+. .++|+++.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~--G~~V~~ld 151 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGR--GDEVIVID 151 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEe
Confidence 3468999999999999999988775 68899875
No 252
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.01 E-value=0.89 Score=46.45 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=34.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V 129 (369)
+.||+|.|+||..|.+-+..+.+||+ +++...+- +. .--+-.++..|...
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~-ve~~~~ss-~~--~~g~~~~~~~p~l~ 51 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPD-VELILISS-RE--RAGKPVSDVHPNLR 51 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC-eEEEEeec-hh--hcCCchHHhCcccc
Confidence 56899999999999999999999998 66443332 22 11222445566554
No 253
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=88.97 E-value=6.8 Score=37.15 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.++|.|+|+ |++|..++.+.++... .+|++.+.. -+++ +.+++|..+.+.-.++...
T Consensus 168 ~~~vlI~g~-~~vg~~~~~~a~~~g~-~~v~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~------------------ 224 (340)
T cd05284 168 GSTVVVIGV-GGLGHIAVQILRALTP-ATVIAVDRS--EEAL-KLAERLGADHVLNASDDVV------------------ 224 (340)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHhCC-CcEEEEeCC--HHHH-HHHHHhCCcEEEcCCccHH------------------
Confidence 468999994 5599999999998632 667776533 3343 3346777655543322211
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+.++.....+|+|++.+.|-..+...+.++..+-++.
T Consensus 225 --~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 225 --EEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYV 263 (340)
T ss_pred --HHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEE
Confidence 223334433468999998776567777888887665544
No 254
>PRK05884 short chain dehydrogenase; Provisional
Probab=88.89 E-value=2.9 Score=38.08 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=40.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
|+.|.|+||.||......+.+. .++|+.+ .+|.+.+.+.+++.+...+ ..|-...+.+++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~ 61 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND--GHKVTLV--GARRDDLEVAAKELDVDAI-VCDNTDPASLEE 61 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhccCcEE-ecCCCCHHHHHH
Confidence 6999999999999999988765 4677765 3567777766666554433 234443444443
No 255
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.86 E-value=3 Score=38.38 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL 117 (369)
.++|.|.|+||.||....+-+.+. .++|++++ +|.+.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~ 41 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA--GYRVFGTS--RNPARA 41 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CChhhc
Confidence 467999999999999999888875 67887765 344443
No 256
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.83 E-value=4.6 Score=36.21 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=31.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
+++.|.|++|.||..+.+.+.+. .++|+.+. ++.+++.+..++
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~--G~~vi~~~--r~~~~~~~~~~~ 48 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQK--GAKLALID--LNQEKLEEAVAE 48 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 57999999999999999998886 46766543 444555444443
No 257
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.82 E-value=4.3 Score=38.25 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|.+.|.|+||.||....+-+.+. .++|+.. .+|.+.+.+...++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~--G~~Vv~~--~r~~~~l~~~~~~l 50 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARR--GARVVLG--DVDKPGLRQAVNHL 50 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 367999999999999999988876 5676653 35566666555544
No 258
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.78 E-value=5.2 Score=41.02 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=81.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|+.-++++=+---+++...|+ .+|++.+ .|-....+++++++|+.+.+..|- -+.-|
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~-i~vv~~a--~ng~~a~~~~~~~~PDVi~ld~em----------------p~mdg 62 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPD-IEVVGTA--RNGREAIDKVKKLKPDVITLDVEM----------------PVMDG 62 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCC-eEEEEec--CCHHHHHHHHHhcCCCEEEEeccc----------------ccccH
Confidence 4789999999998888899998876 6788776 567888999999999999985431 13345
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccce
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL 203 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsL 203 (369)
-+.+.++.+....-+|+..-..--|-.-|++|++.|.-=.++ |++.
T Consensus 63 l~~l~~im~~~p~pVimvsslt~~g~~~t~~al~~gAvD~i~-kp~~ 108 (350)
T COG2201 63 LEALRKIMRLRPLPVIMVSSLTEEGAEATLEALELGAVDFIA-KPSG 108 (350)
T ss_pred HHHHHHHhcCCCCcEEEEeccccccHHHHHHHHhcCcceeec-CCCc
Confidence 666777666666667777778888899999999999444444 4443
No 259
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.76 E-value=0.51 Score=48.28 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=26.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE---EEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~---VvaLa 109 (369)
|.+|+|+||||.+|...++.+.+||+ |. ++.++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~-f~~~~l~~~s 36 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND-FDLIEPVFFS 36 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC-CCcCcEEEec
Confidence 35899999999999999996666765 77 66644
No 260
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=88.72 E-value=6 Score=32.57 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEH 99 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~ 99 (369)
|++.|.|+||+||....+.+.++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~ 23 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAER 23 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHh
Confidence 47899999999999999999875
No 261
>PRK14982 acyl-ACP reductase; Provisional
Probab=88.66 E-value=0.95 Score=45.84 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=32.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|+|.|+|+|||||....+-+.+...-.+|+.+ +++.+.+.+...++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv--~R~~~rl~~La~el 201 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLV--ARQQERLQELQAEL 201 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEE--cCCHHHHHHHHHHh
Confidence 68999999999999999999743111233332 46677777666655
No 262
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=88.64 E-value=4.4 Score=37.57 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.|++.|.|+||.||.....-+.+. .++|+.+. +|.+.+.+..++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 53 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARA--GAKVAILD--RNQEKAEAVVAE 53 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999998875 56776543 344444443333
No 263
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.64 E-value=6.4 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+|.|.|+||.||....+-+.+. .++|+++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC--CCeEEEEe
Confidence 6999999999999999988765 57888874
No 264
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=88.52 E-value=0.44 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHED 101 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd 101 (369)
++|+|+||||-+|+..++++.++|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~ 25 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD 25 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC
Confidence 4799999999999999999995544
No 265
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=88.50 E-value=3.8 Score=41.51 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=67.8
Q ss_pred eeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCCHHHHHHHHHhhCC-----CEEEEcCchhHHHHHHHHhcCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVKRFKP-----QVVAVRNESLLDEIKEALANVEE 149 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaag~Nv~lL~eQ~~~FkP-----~~V~v~de~~~~~l~~~l~~~~~ 149 (369)
.||+|.|. |=||+..++++.+ +|++++|+|+---...+.|+-+.+-=.. .-|...+.. +.-.+.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~--------l~v~g~ 72 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQ--------LFVGDD 72 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCE--------EEECCE
Confidence 47999999 9999999999876 4688999988655567777665542111 111111110 110112
Q ss_pred CceEEecHHHHHHHh-cCCCCCEEEEeccCccCcHHHHHHHHcC-Cceeee
Q 017567 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (369)
Q Consensus 150 ~~~v~~G~~gl~~~~-~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaLA 198 (369)
.++++.. ....++- ...++|+|+.+--++.--+-.-.++++| |+|-+.
T Consensus 73 ~i~v~~~-~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS 122 (336)
T PRK13535 73 AIRLLHE-RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS 122 (336)
T ss_pred EEEEEEc-CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence 2334322 2222221 1247999999977777777777889999 444443
No 266
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=88.48 E-value=4.6 Score=35.84 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=25.7
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
|.|.|+||.||....+.+.+. .++|+.++..
T Consensus 1 vlItG~~g~iG~~la~~l~~~--G~~v~~~~r~ 31 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE--GAKVIITYRS 31 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 479999999999999998875 5788777654
No 267
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.46 E-value=4.7 Score=38.92 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=58.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
.++|.|.| +|.+|..++.+.+.. .. +|++++ ++-+++ ++++++..+.+.-.++.....+.
T Consensus 178 g~~vlI~g-~g~vG~~~~~lak~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~------------- 238 (361)
T cd08231 178 GDTVVVQG-AGPLGLYAVAAAKLA--GARRVIVID--GSPERL-ELAREFGADATIDIDELPDPQRR------------- 238 (361)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEc--CCHHHH-HHHHHcCCCeEEcCcccccHHHH-------------
Confidence 35799998 599999999999986 35 566654 333443 45567766554432221111111
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
+.+.++.....+|+|++.+-|...+...+..++.+-+
T Consensus 239 ---~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~ 275 (361)
T cd08231 239 ---AIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGT 275 (361)
T ss_pred ---HHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCE
Confidence 1334444444689999986555567777777765433
No 268
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.41 E-value=0.62 Score=47.94 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.+||.|.|+||+||...++-+.+. .++|+++.
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~--G~~V~~ld 150 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMAR--GDSVIVVD 150 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHC--cCEEEEEe
Confidence 368999999999999999988875 67898874
No 269
>PRK07985 oxidoreductase; Provisional
Probab=88.40 E-value=3.3 Score=39.52 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=39.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC---CHHHHHHHHHhhCCCEE-EEcCchhHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---NITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~---Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~ 142 (369)
|++.|.|+||.||.++.+-+.+. .++|+.+.-.. +.+.+.+..++...+.. ...|-.+.+.+.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 117 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARS 117 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHH
Confidence 68999999999999999999876 67777643222 33445555544433332 2344444444443
No 270
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.38 E-value=1.9 Score=44.60 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=51.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH-HHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv-~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.+-|+||++|.--+.=.-..++ .+|++|+=.+|- .-++...+.|. .|..+++... ..++++.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~-~kv~cLVRA~s~E~a~~RL~~~~~----------~~~~~~e~~~---~ri~vv~ 66 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD-AKVICLVRAQSDEAALARLEKTFD----------LYRHWDELSA---DRVEVVA 66 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHHhh----------hhhhhhhhhc---ceEEEEe
Confidence 4789999999999766554444455 999999977772 23333344443 2333444322 3467777
Q ss_pred cHHH----------HHHHhcCCCCCEEEEe
Q 017567 156 GEQG----------VIEAARHPDAVTVVTG 175 (369)
Q Consensus 156 G~~g----------l~~~~~~~~~D~Vv~A 175 (369)
|+-+ -.++++ .+|.|+-.
T Consensus 67 gDl~e~~lGL~~~~~~~La~--~vD~I~H~ 94 (382)
T COG3320 67 GDLAEPDLGLSERTWQELAE--NVDLIIHN 94 (382)
T ss_pred cccccccCCCCHHHHHHHhh--hcceEEec
Confidence 7643 344554 48888864
No 271
>PRK06484 short chain dehydrogenase; Validated
Probab=88.31 E-value=4.2 Score=41.51 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=43.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
.|.+.|.|+|+-||..+.+-+.+. .++|+.+ .++.+.+.++.++...+...+ .|-.+.+.+++
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 68 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARA--GDQVVVA--DRNVERARERADSLGPDHHALAMDVSDEAQIRE 68 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEeccCCHHHHHH
Confidence 368999999999999999998876 5677654 356788877777765444332 34333334443
No 272
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.29 E-value=4.2 Score=37.71 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=39.7
Q ss_pred CeeEEEEec--CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE-EEEcCchhHHHHHH
Q 017567 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV-VAVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGS--TGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~-V~v~de~~~~~l~~ 142 (369)
.|.++|.|+ ++-||..+-+-+.+. .++|+...-+.|.+++.+.+.++..+. +...|-.+.+.+++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 368999999 899999999888875 566665443444555555555553322 22244444444443
No 273
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=88.29 E-value=2.1 Score=43.58 Aligned_cols=52 Identities=33% Similarity=0.409 Sum_probs=38.5
Q ss_pred eeEEEEecCChHhHHHHHHH-HhCCCceEEE---EEeecCCHHHHHHHHHhhCCCEEEE
Q 017567 77 KPISVLGSTGSIGTQTLDIV-AEHEDKFRVV---ALAAGSNITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI-~~~pd~F~Vv---aLaag~Nv~lL~eQ~~~FkP~~V~v 131 (369)
+++.|.|..|+||.+-+.-+ +++|| ++|+ .|+...|.+-|..... .|++.++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv 56 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAGNLENLADVED--SPRYRFV 56 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccCCHHHHHhhhc--CCCceEE
Confidence 47999999999999988765 45676 6555 4577889999976655 4555554
No 274
>PRK05855 short chain dehydrogenase; Validated
Probab=88.25 E-value=3.8 Score=41.49 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=31.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
+++.|.|+||.||.++.+-+.+. .++|+.++ +|.+.+.+..++
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~ 358 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFARE--GAEVVASD--IDEAAAERTAEL 358 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 57999999999999999998875 56766543 455655554443
No 275
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=88.18 E-value=7.4 Score=36.29 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=54.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..++.|.|+||++|..+..+.++. .++|++++ ++-+.+ +.++++....+.-. +. +.+.+
T Consensus 163 ~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~--~~~~~~-~~~~~~~~~~~~~~-~~----~~~~~----------- 221 (332)
T cd08259 163 GDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVT--RSPEKL-KILKELGADYVIDG-SK----FSEDV----------- 221 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEe--CCHHHH-HHHHHcCCcEEEec-HH----HHHHH-----------
Confidence 358999999999999999999987 56777665 333433 44455554443311 11 22211
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+. .++|.|++.+ |...+...+.++..+-+
T Consensus 222 -----~~~---~~~d~v~~~~-g~~~~~~~~~~~~~~g~ 251 (332)
T cd08259 222 -----KKL---GGADVVIELV-GSPTIEESLRSLNKGGR 251 (332)
T ss_pred -----Hhc---cCCCEEEECC-ChHHHHHHHHHhhcCCE
Confidence 111 1589999875 44457777777765543
No 276
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=88.17 E-value=3.6 Score=41.66 Aligned_cols=100 Identities=25% Similarity=0.339 Sum_probs=65.6
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHH
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~ 158 (369)
|+|.|. |.||+..++.+.++ ++++|+|+.- .+.+.++..+++++-+.+. ..+....++.+ .++.+ .|.
T Consensus 1 VaInG~-GrIGr~varav~~~-~d~elVaVnD-~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~------~~l~v-~g~- 68 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQ-DDMKLVGVTK-TSPDFEAYRAKELGIPVYA-ASEEFIPRFEE------AGIEV-AGT- 68 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhC-CCcEEEEEec-CChHHHHHHHHHhCCCEEe-ecCCcceEecc------CceEe-cCC-
Confidence 567776 99999999999887 5699999986 7788777888888755554 22111001111 11222 232
Q ss_pred HHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCC
Q 017567 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (369)
Q Consensus 159 gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (369)
+.++. .++|+|+.+-..+.++.=--.-++.|+
T Consensus 69 -~eeLl--~~vDiVve~Tp~~~~~~na~~~~~~Ga 100 (333)
T TIGR01546 69 -LEDLL--EKVDIVVDATPGGIGAKNKPLYEKAGV 100 (333)
T ss_pred -HHHHh--hcCCEEEECCCCCCChhhHHHHHhCCc
Confidence 56665 359999999877877765555556663
No 277
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.14 E-value=5.2 Score=36.49 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
|++.|.|+||.||......+.+. ..+|+.+. +|.+.+.+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~--r~~~~~~~~~ 42 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE--GANVVITG--RTKEKLEEAK 42 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 67999999999999999999876 45676653 3444444433
No 278
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.12 E-value=9.2 Score=36.64 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
+|+|+| +|.||.+...-+++. .++|.+..
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~--g~~V~~~d 30 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSL--GHTVYGVS 30 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHC--CCEEEEEE
Confidence 699999 799999998888876 46776654
No 279
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.09 E-value=0.4 Score=47.88 Aligned_cols=33 Identities=33% Similarity=0.665 Sum_probs=27.9
Q ss_pred eeEE-EEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPIS-VLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~-ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|+++ |||+||++|+--+.++..||. |++--|.|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~-f~ikvLgA 37 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPY-FSIKVLGA 37 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCc-ceeeeecc
Confidence 4555 999999999999999999986 88877733
No 280
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.09 E-value=4.3 Score=38.18 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=58.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.|.|+ |.||..++.+.+.. .++ |++. ..+-+++ +.++++..+.+.-.+ .. .
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak~~--G~~~Vi~~--~~~~~r~-~~a~~~Ga~~~i~~~-~~----~-------------- 176 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAAAA--GAARVVAA--DPSPDRR-ELALSFGATALAEPE-VL----A-------------- 176 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEE--CCCHHHH-HHHHHcCCcEecCch-hh----H--------------
Confidence 47999986 99999999999876 455 5554 3444554 567888876544211 11 1
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.+.++.....+|+|+++..+-..+.-.+.+++.+-++
T Consensus 177 --~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 177 --ERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTA 214 (280)
T ss_pred --HHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence 11122222335899999876666677777777766544
No 281
>PLN02650 dihydroflavonol-4-reductase
Probab=88.02 E-value=0.71 Score=44.65 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=28.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER--GYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 468999999999999999988875 678888764
No 282
>PRK06484 short chain dehydrogenase; Validated
Probab=87.96 E-value=7.4 Score=39.74 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-cCchhHHHHHH
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v-~de~~~~~l~~ 142 (369)
..|.+.|.|+||-||..+.+-+.+. .++|+.+ .+|.+.+.+...+...+...+ .|-.+.+.+++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 332 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA--GDRLLII--DRDAEGAKKLAEALGDEHLSVQADITDEAAVES 332 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEccCCCHHHHHH
Confidence 3478999999999999999888876 4677765 356777777776665554332 44444444444
No 283
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.88 E-value=6.4 Score=42.86 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=99.7
Q ss_pred CCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe---------------ecCCHHHHHHHHHhhCCCEEEEcCchh-
Q 017567 73 WDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA---------------AGSNITLLADQVKRFKPQVVAVRNESL- 136 (369)
Q Consensus 73 ~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa---------------ag~Nv~lL~eQ~~~FkP~~V~v~de~~- 136 (369)
.++.+++.|+|| |+.|.+-++-.+++|+ |++||.. ...-.+ +.++++++..+.+.++-++.
T Consensus 113 ~~~~~r~lIiGA-G~ag~~l~r~~~~~~~-~~pV~fiDdd~~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~ 189 (588)
T COG1086 113 KDNRIRLLIIGA-GSAGDLLLRALRRDPE-YTPVAFLDDDPDLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSAS 189 (588)
T ss_pred ccCCCceEEEcC-chHHHHHHHHHHhCCC-cceEEEECCChhhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCCC
Confidence 345578999998 7889999999999988 8887753 334456 89999999999888765443
Q ss_pred ---HHHHHHHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecc------
Q 017567 137 ---LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG------ 207 (369)
Q Consensus 137 ---~~~l~~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG------ 207 (369)
.+++-+.+...+..++++..-+.+.+.... ==|+-+.=+=|=.=..|-.+.+.+ .+-||-.||.||
T Consensus 190 ~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~-lreI~ieDLLgR~pV~~d~~~i~~----~~~gK~vLVTGagGSiGs 264 (588)
T COG1086 190 QEERRRILLRLARTGIAVRILPQLTDLKDLNGQ-LREIEIEDLLGRPPVALDTELIGA----MLTGKTVLVTGGGGSIGS 264 (588)
T ss_pred HHHHHHHHHHHHhcCCcEEecCcHHHHHHhccc-cccCCHHHHhCCCCCCCCHHHHHh----HcCCCEEEEeCCCCcHHH
Confidence 233333444444556677665554442111 112222222222222333333332 355677788876
Q ss_pred cchhHHhhhcCCeEeecccchhhHHHhhcC
Q 017567 208 PFVLPLAHKHNIKILPADSEHSAIFQCIQG 237 (369)
Q Consensus 208 ~li~~~a~k~~~~IlPVDSEHsAIfQ~L~g 237 (369)
.+..+.++..-.+|+=.|.--.++||.-+.
T Consensus 265 el~~qil~~~p~~i~l~~~~E~~~~~i~~e 294 (588)
T COG1086 265 ELCRQILKFNPKEIILFSRDEYKLYLIDME 294 (588)
T ss_pred HHHHHHHhcCCCEEEEecCchHHHHHHHHH
Confidence 456677777678899999888888887553
No 284
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.82 E-value=3.7 Score=39.39 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=35.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVA 130 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~--Nv~lL~eQ~~~FkP~~V~ 130 (369)
.|++.|.|++|.||.....-+.+. ..+|+...-+. ..+.+.++++....+.+.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~ 66 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASALDASDVLDEIRAAGAKAVA 66 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchhHHHHHHHHHHhcCCeEEE
Confidence 368999999999999998888876 45666543322 345555666655444433
No 285
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.78 E-value=3.7 Score=41.44 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=40.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V 129 (369)
|++.|.|+||.||....+.+.++ .++|+.+....+.+.+.+...+.+...+
T Consensus 211 ~~vlItGasggIG~~la~~l~~~--Ga~vi~~~~~~~~~~l~~~~~~~~~~~~ 261 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARD--GAHVVCLDVPAAGEALAAVANRVGGTAL 261 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCccHHHHHHHHHHcCCeEE
Confidence 68999999999999999998876 6788887666677777777776654433
No 286
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=87.72 E-value=0.66 Score=49.75 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
++|.|.|+||+||+...+-+.+. ..++|+++.-
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~-~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRD-DNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhC-CCcEEEEEeC
Confidence 57999999999999999988764 2599999874
No 287
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=87.71 E-value=7.8 Score=36.08 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=57.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCc-hhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de-~~~~~l~~~l~~~~~~~~v~ 154 (369)
..+|.|.|++|.+|..++.+.+.+ ..+|++++ ++-+. .+.++++..+.+.-..+ ...+
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~--~~~~~-~~~~~~~g~~~~~~~~~~~~~~---------------- 201 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAA--GGPAK-TALVRALGADVAVDYTRPDWPD---------------- 201 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEe--CCHHH-HHHHHHcCCCEEEecCCccHHH----------------
Confidence 357999999999999999999987 46676664 33333 34456666655432211 1111
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+.+......+|+|++.+.|-. ....+.++..+-+
T Consensus 202 ----~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~ 236 (324)
T cd08244 202 ----QVREALGGGGVTVVLDGVGGAI-GRAALALLAPGGR 236 (324)
T ss_pred ----HHHHHcCCCCceEEEECCChHh-HHHHHHHhccCcE
Confidence 1222223235899999876654 4667777765544
No 288
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=87.71 E-value=2 Score=42.92 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=27.3
Q ss_pred EEEEecCChHhHHHHHHHHhC-CCceEEEEEeecCCHHHHHHHHHhh
Q 017567 79 ISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~-pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|.|.|+|||||.....-+.++ |.+ |+.+. +|-..|.+.-+++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~--lil~d--~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKK--LILFD--RDENKLYELEREL 43 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SE--EEEEE--S-HHHHHHHHHHC
T ss_pred CEEEccccHHHHHHHHHHHhcCCCe--EEEeC--CChhHHHHHHHHH
Confidence 679999999999988777654 433 33332 4455555555655
No 289
>PRK06123 short chain dehydrogenase; Provisional
Probab=87.60 E-value=3.8 Score=36.87 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=29.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
|.+.|.|+||.||....+-+.+. .+.|+ +...++-+.+.++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~--G~~vv-~~~~~~~~~~~~~ 43 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAER--GYAVC-LNYLRNRDAAEAV 43 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEE-EecCCCHHHHHHH
Confidence 57999999999999998888775 45665 4444555544443
No 290
>PRK07069 short chain dehydrogenase; Validated
Probab=87.52 E-value=4.9 Score=36.15 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=30.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
++.|.|+||.||....+-+.+. .++|+.+.-. ..+.+.+...+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~--G~~v~~~~r~-~~~~~~~~~~~ 43 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQ--GAKVFLTDIN-DAAGLDAFAAE 43 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHC--CCEEEEEeCC-cchHHHHHHHH
Confidence 4899999999999999999875 5788766532 23444444433
No 291
>PRK06953 short chain dehydrogenase; Provisional
Probab=87.48 E-value=5.4 Score=35.78 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=30.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~ 118 (369)
+|++.|.|+||.||..+.+-+.+. .++|+.+. +|.+.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~--G~~v~~~~--r~~~~~~ 39 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD--GWRVIATA--RDAAALA 39 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC--CCEEEEEE--CCHHHHH
Confidence 468999999999999999988765 57877753 4555543
No 292
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=87.46 E-value=6.7 Score=37.86 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|.+.|.|+|+.||..+.+-+.+.. .++|+.++ +|.+.+.+.+++.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G-~~~V~l~~--r~~~~~~~~~~~l 48 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATG-EWHVIMAC--RDFLKAEQAAKSL 48 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-CCEEEEEe--CCHHHHHHHHHHh
Confidence 3579999999999999998888753 16776643 5666665555554
No 293
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.42 E-value=7.4 Score=35.68 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=56.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
++|.|.|++|.+|..++.+.+.. ..+|+.++.. -+.+.. .+++..+.+.-.+... +
T Consensus 146 ~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~--~~~~~~-~~~~g~~~~~~~~~~~---~---------------- 201 (328)
T cd08268 146 DSVLITAASSSVGLAAIQIANAA--GATVIATTRT--SEKRDA-LLALGAAHVIVTDEED---L---------------- 201 (328)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCC--HHHHHH-HHHcCCCEEEecCCcc---H----------------
Confidence 58999999999999999999876 4566665432 344333 3555544333222111 1
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
.+.+.+......+|.+++...| .++...+.++..+-++
T Consensus 202 ~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~ 239 (328)
T cd08268 202 VAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPGGTL 239 (328)
T ss_pred HHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccCCEE
Confidence 1122333333358999988666 6667777777655443
No 294
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.40 E-value=6.1 Score=37.56 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=58.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCc-hhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de-~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|++|+||..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.++ +.. .+
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~--s~~~-~~~~~~lGa~~vi~~~~~~~~---~~------------- 198 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAG--SDEK-VAYLKKLGFDVAFNYKTVKSL---EE------------- 198 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeccccccH---HH-------------
Confidence 58999999999999999999876 456776543 3344 35567788776654332 111 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++. ...+|+|++++.| ..+...+..++.|=++.
T Consensus 199 ---~~~~~~-~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 199 ---TLKKAS-PDGYDCYFDNVGG-EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred ---HHHHhC-CCCeEEEEECCCH-HHHHHHHHHhCcCcEEE
Confidence 111121 2258999987654 45566667776655543
No 295
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=87.38 E-value=5.3 Score=36.94 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=33.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
+.+.|.|+||.||..+.+-+.+. .++|+.+ +.++.+.+.+...++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~--G~~V~~~-~~~~~~~~~~~~~~l 46 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQE--GYRVVLH-YHRSAAAASTLAAEL 46 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhC--CCeEEEE-cCCcHHHHHHHHHHH
Confidence 36899999999999999998875 5677765 455555555554444
No 296
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=87.32 E-value=0.69 Score=46.23 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=28.2
Q ss_pred eEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCC
Q 017567 78 PISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSN 113 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaag~N 113 (369)
+|+|+|+||.+|...++.+.+ || .++++.++..++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp-~~~l~~~as~~~ 37 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP-IDKLVLLASDRS 37 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC-hhhEEEEecccc
Confidence 589999999999999999988 65 367776655443
No 297
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.31 E-value=1.5 Score=39.53 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=32.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
|++.|+|+||.||....+.+.+. .++|+.++ +|.+.+.+...+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA--GATVILVA--RHQKKLEKVYDA 49 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CChHHHHHHHHH
Confidence 68999999999999999999875 57776654 455555544443
No 298
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=87.27 E-value=6.5 Score=36.69 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=56.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|+||..++.+.+.. ..+++..+.. -+. .+.++++..+.+.-.++.. +.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~~--------------- 197 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRR--DAG-VAELRALGIGPVVSTEQPG---WQ--------------- 197 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC--CCeEEEEecC--HHH-HHHHHhcCCCEEEcCCCch---HH---------------
Confidence 58999999999999999999987 4566665432 222 2333445544433222111 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+.++.....+|+|++...| ..+...+..++.+-++.
T Consensus 198 -~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v 235 (324)
T cd08292 198 -DKVREAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLV 235 (324)
T ss_pred -HHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEE
Confidence 122333333458999987555 45666677776655444
No 299
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=87.24 E-value=1.2 Score=41.51 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=28.4
Q ss_pred EEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 81 ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
|-||||++|...|+-+-+.++..+|++|.=.+|.+...+.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl 41 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERL 41 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhh
Confidence 57999999999998777766533999998777764443333
No 300
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=87.20 E-value=3.7 Score=38.08 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=25.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
||.|+|+||.||....+-+.++ .++|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~--g~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES--GHEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC--CCeEEEEe
Confidence 5899999999999999988776 57787663
No 301
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.20 E-value=5.4 Score=38.84 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=57.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCc-hhHHHHHHHHhcCCCCceE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de-~~~~~l~~~l~~~~~~~~v 153 (369)
..+|.|.|+ |.||..++.+.+.. ..+ |+++.. +-++ .+.++++..+.+.-..+ +..+.
T Consensus 177 g~~VlV~G~-g~vG~~a~~~ak~~--G~~~Vi~~~~--~~~~-~~~~~~~Ga~~~i~~~~~~~~~~-------------- 236 (358)
T TIGR03451 177 GDSVAVIGC-GGVGDAAIAGAALA--GASKIIAVDI--DDRK-LEWAREFGATHTVNSSGTDPVEA-------------- 236 (358)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcC--CHHH-HHHHHHcCCceEEcCCCcCHHHH--------------
Confidence 357999985 99999999999976 453 665533 3334 34557787766543222 11111
Q ss_pred EecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 154 ~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.++.....+|+|++++.+-..+.-.+.+++.|=++
T Consensus 237 ------i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~i 272 (358)
T TIGR03451 237 ------IRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTV 272 (358)
T ss_pred ------HHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence 222223335899999876555566666666655443
No 302
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=87.15 E-value=6.8 Score=37.66 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=58.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++|++|..++.+.+.. .++|++.+ .. +++ +.+++|....+.-..... +.+
T Consensus 155 ~~~vlI~ga~g~vg~~~~~~a~~~--G~~v~~~~-~~--~~~-~~~~~~g~~~v~~~~~~~---~~~------------- 212 (339)
T cd08249 155 GKPVLIWGGSSSVGTLAIQLAKLA--GYKVITTA-SP--KNF-DLVKSLGADAVFDYHDPD---VVE------------- 212 (339)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHc--CCeEEEEE-Cc--ccH-HHHHhcCCCEEEECCCch---HHH-------------
Confidence 368999999999999999999987 56788766 32 333 233667665544322111 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (369)
.+.++.. ..+|.|++.+.+-..+...+.+++.
T Consensus 213 ---~l~~~~~-~~~d~vl~~~g~~~~~~~~~~~l~~ 244 (339)
T cd08249 213 ---DIRAATG-GKLRYALDCISTPESAQLCAEALGR 244 (339)
T ss_pred ---HHHHhcC-CCeeEEEEeeccchHHHHHHHHHhc
Confidence 1222333 3589999876554788888888886
No 303
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=86.99 E-value=4.9 Score=36.84 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=31.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
.|++.|.|++|.||....+.+.+. .++|+. .+.++.+.+.++.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~--G~~vvi-~~~~~~~~~~~~~ 49 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKE--KAKVVI-NYRSDEEEANDVA 49 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHH
Confidence 368999999999999999988876 456654 4555554444333
No 304
>PLN00198 anthocyanidin reductase; Provisional
Probab=86.87 E-value=0.86 Score=43.75 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.|+|.|.|+||+||+...+-+.+. .++|+++.-
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r 41 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK--GYAVNTTVR 41 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC--CCEEEEEEC
Confidence 468999999999999999988875 578887763
No 305
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=86.86 E-value=15 Score=34.10 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=59.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCch-hHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~-~~~~l~~~l~~~~~~~~v~ 154 (369)
..+|.|.|++|.||..++.+.+.. ..+|++++.. -+++ +++++|..+.+.-..+. ....
T Consensus 139 ~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~~~~--------------- 198 (323)
T cd05282 139 GDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRR--DEQV-EELKALGADEVIDSSPEDLAQR--------------- 198 (323)
T ss_pred CCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecC--hHHH-HHHHhcCCCEEecccchhHHHH---------------
Confidence 358999999999999999999986 5677765433 3443 45577776555433221 1111
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+......+|.|++...| ..+...+..++.+=++.
T Consensus 199 -----~~~~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v 234 (323)
T cd05282 199 -----VKEATGGAGARLALDAVGG-ESATRLARSLRPGGTLV 234 (323)
T ss_pred -----HHHHhcCCCceEEEECCCC-HHHHHHHHhhCCCCEEE
Confidence 2222222358899987655 45666777776654443
No 306
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.52 E-value=6.6 Score=37.79 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=59.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.++|.|+|+ |.+|..++.+.+.. ..+++..+ .++-+++. .++++..+.+.-.++...+++
T Consensus 161 g~~vlV~G~-g~vG~~~~~~a~~~--G~~~v~~~-~~~~~~~~-~~~~~Ga~~~i~~~~~~~~~~--------------- 220 (347)
T PRK10309 161 GKNVIIIGA-GTIGLLAIQCAVAL--GAKSVTAI-DINSEKLA-LAKSLGAMQTFNSREMSAPQI--------------- 220 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEE-CCCHHHHH-HHHHcCCceEecCcccCHHHH---------------
Confidence 358999985 99999999999977 45433222 34555554 457777665543222112222
Q ss_pred cHHHHHHHhcCCCCC-EEEEeccCccCcHHHHHHHHcCCceee
Q 017567 156 GEQGVIEAARHPDAV-TVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 156 G~~gl~~~~~~~~~D-~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (369)
.++.....+| +|++++-+...+.-.+.+++.|-++.+
T Consensus 221 -----~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 221 -----QSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred -----HHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 2222223467 888987666667777888888866543
No 307
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.40 E-value=7.8 Score=38.15 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCc----hhH-HHHHHH
Q 017567 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNE----SLL-DEIKEA 143 (369)
Q Consensus 72 ~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd---~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de----~~~-~~l~~~ 143 (369)
+...|+||+||+|.+ |++--.++.+... .++|+++.+++ +.+...++++.-.+..+... +.+ .++.+.
T Consensus 85 ~~~~~~ri~vl~Sg~--gsnl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T PRK06027 85 DSAERKRVVILVSKE--DHCLGDLLWRWRSGELPVEIAAVISNH--DDLRSLVERFGIPFHHVPVTKETKAEAEARLLEL 160 (286)
T ss_pred ccccCcEEEEEEcCC--CCCHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEeccCccccchhHHHHHHH
Confidence 334578999999988 9988888865433 68999998765 23344588877776664321 111 133444
Q ss_pred HhcCCCCceEEecHHHHH--HHhcCCCCCEEEE----eccCccCcHHHHHHHHcCC-----ceeeecccceeecccchhH
Q 017567 144 LANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGK-----DIALANKETLIAGGPFVLP 212 (369)
Q Consensus 144 l~~~~~~~~v~~G~~gl~--~~~~~~~~D~Vv~----AIvG~aGL~pt~~Ai~~gK-----~iaLANKEsLV~aG~li~~ 212 (369)
+...+.+.-|++|---+. ++.+..+ .-++| -+.-+-|..|...|+.+|. +|=..+.| +-.|+.|.+
T Consensus 161 l~~~~~Dlivlagy~~il~~~~l~~~~-~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~--~D~G~Ii~Q 237 (286)
T PRK06027 161 IDEYQPDLVVLARYMQILSPDFVARFP-GRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTAD--LDEGPIIEQ 237 (286)
T ss_pred HHHhCCCEEEEecchhhcCHHHHhhcc-CCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 444444555666643322 1333221 23343 2455788999999999986 34455554 367777744
No 308
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.37 E-value=7.2 Score=36.94 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=25.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|.+.|.|+++.||..+.+-+.+. ..+|+.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~--G~~vii~~ 37 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAE--GARVVVND 37 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEee
Confidence 368999999999999999888875 46666653
No 309
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.34 E-value=7.8 Score=37.81 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=57.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |+||..++.+.+.. .+ +|+++... -++ .+.++++..+.+.-.++. -+.+.+
T Consensus 189 ~~VlV~G~-g~vG~~a~q~ak~~--G~~~vi~~~~~--~~~-~~~~~~~Ga~~~i~~~~~-~~~~~~------------- 248 (369)
T cd08301 189 STVAIFGL-GAVGLAVAEGARIR--GASRIIGVDLN--PSK-FEQAKKFGVTEFVNPKDH-DKPVQE------------- 248 (369)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcCC--HHH-HHHHHHcCCceEEccccc-chhHHH-------------
Confidence 58999985 99999999999976 45 56665432 333 345677876554422210 011111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
.+.++... .+|+|++++-+-..+...+.+++.|
T Consensus 249 ---~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~ 281 (369)
T cd08301 249 ---VIAEMTGG-GVDYSFECTGNIDAMISAFECVHDG 281 (369)
T ss_pred ---HHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcC
Confidence 22333333 5899999976666777777887763
No 310
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=86.26 E-value=4.9 Score=38.67 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=57.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.|.|+ |++|..++.+.+.. .+ .|++.+ ++-+++ ++++++..+.+.-..+.. +.
T Consensus 174 ~~vlI~g~-g~vG~~a~q~a~~~--G~~~v~~~~--~~~~~~-~~~~~~ga~~~i~~~~~~---~~-------------- 230 (351)
T cd08233 174 DTALVLGA-GPIGLLTILALKAA--GASKIIVSE--PSEARR-ELAEELGATIVLDPTEVD---VV-------------- 230 (351)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEC--CCHHHH-HHHHHhCCCEEECCCccC---HH--------------
Confidence 57999984 99999999999986 56 565553 344443 455667665544222111 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.+.++.....+|.|++.+.+...+...+.+++.+-++
T Consensus 231 --~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 268 (351)
T cd08233 231 --AEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTA 268 (351)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEE
Confidence 12223333335899999865555666677777666543
No 311
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=86.24 E-value=12 Score=34.04 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=33.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V 129 (369)
.++|.|.|++|+||..+..+.+.. .++|+..+ ++-+.+. .++++..+.+
T Consensus 140 ~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~--~~~~~~~-~~~~~g~~~~ 188 (323)
T cd05276 140 GETVLIHGGASGVGTAAIQLAKAL--GARVIATA--GSEEKLE-ACRALGADVA 188 (323)
T ss_pred CCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEc--CCHHHHH-HHHHcCCCEE
Confidence 368999999999999999999987 45555543 3334433 3355665444
No 312
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=86.10 E-value=6 Score=41.21 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=48.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEee-----------cCCHHHHHHHHHhhCCCEEEEcCch
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-----------GSNITLLADQVKRFKPQVVAVRNES 135 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaa-----------g~Nv~lL~eQ~~~FkP~~V~v~de~ 135 (369)
.+++.|+| +|+-|.+..+-++++|+ .|+++|..- -.|.+.|.+.+++.+.+.|.++-+.
T Consensus 143 ~rrVLIvG-aG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~ 213 (463)
T PRK10124 143 KRMVAVAG-DLPAGQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSM 213 (463)
T ss_pred CCcEEEEE-CCHHHHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 46899998 57889999999988876 699999764 3577889999999999999987643
No 313
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.03 E-value=1.1 Score=42.47 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
..|+|.|.|+||.||.+..+-+.+. .++|++++-
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~r 37 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFR--GYTINATVR 37 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEEc
Confidence 3578999999999999999988775 678877653
No 314
>PRK07577 short chain dehydrogenase; Provisional
Probab=86.02 E-value=5 Score=35.81 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|++.|.|+||.||.+...-+.+. .++|+++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~--G~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANL--GHQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEEe
Confidence 67999999999999999988876 46787765
No 315
>PLN02775 Probable dihydrodipicolinate reductase
Probab=85.98 E-value=7.9 Score=38.66 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.+|+|.|++|=.|+.+.+-+.+ +.|++|+...
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~--~~~~Lv~~~~ 43 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVS--AGLQLVPVSF 43 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhc--CCCEEEEEec
Confidence 4899999999999999999998 6699999644
No 316
>PRK07201 short chain dehydrogenase; Provisional
Probab=85.93 E-value=6.5 Score=41.31 Aligned_cols=44 Identities=30% Similarity=0.272 Sum_probs=33.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
.|++.|.|+||.||....+-+.+. .++|+.++ +|-+.+.+...+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 414 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEA--GATVFLVA--RNGEALDELVAE 414 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 368999999999999999988876 56777764 455665554443
No 317
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.89 E-value=7.7 Score=35.83 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=33.3
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 76 ~kkI~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
.|.+.|.|++ +.||..+.+-+.+. .++|+.. + +| +.+.+++++...
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~-~-r~-~~~~~~~~~~~~ 54 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYT-Y-QN-DRMKKSLQKLVD 54 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEe-c-Cc-hHHHHHHHhhcc
Confidence 4689999999 78999999998875 6777754 3 45 455555655543
No 318
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.75 E-value=6 Score=38.79 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=58.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |.||..++.+.+.. .. +|+++. .+-+++ +.++++..+.+.-..+.. +.+
T Consensus 193 ~~VlV~G~-G~vG~~a~~lak~~--G~~~Vi~~~--~~~~r~-~~a~~~Ga~~~i~~~~~~---~~~------------- 250 (371)
T cd08281 193 QSVAVVGL-GGVGLSALLGAVAA--GASQVVAVD--LNEDKL-ALARELGATATVNAGDPN---AVE------------- 250 (371)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCcEEEEc--CCHHHH-HHHHHcCCceEeCCCchh---HHH-------------
Confidence 57999995 99999999999876 45 465553 344444 456778776554322211 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++... .+|+|++++-+-..+.-.+.+++.|=++.
T Consensus 251 ---~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 251 ---QVRELTGG-GVDYAFEMAGSVPALETAYEITRRGGTTV 287 (371)
T ss_pred ---HHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCCEEE
Confidence 12222222 58999998755567777777877765543
No 319
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=85.70 E-value=8.9 Score=36.37 Aligned_cols=99 Identities=9% Similarity=0.097 Sum_probs=58.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC-HHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN-ITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~N-v~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
.++|.|.|++|++|..++.+.+.. ..+|++.+.... .+.-.+.++++..+.+.-.++.....+.
T Consensus 147 g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------- 211 (341)
T cd08290 147 GDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLAT------------- 211 (341)
T ss_pred CCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHH-------------
Confidence 468999999999999999999987 577877765321 1122344466776665533221000011
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
+.+..+... .+|.|++...| ..+...+..++.+-+
T Consensus 212 ---~~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~ 246 (341)
T cd08290 212 ---ELLKSAPGG-RPKLALNCVGG-KSATELARLLSPGGT 246 (341)
T ss_pred ---HHHHHHcCC-CceEEEECcCc-HhHHHHHHHhCCCCE
Confidence 112222222 58899987555 455566666655443
No 320
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=85.54 E-value=1.1 Score=42.05 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=27.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
++|.|+|+||.||....+-+.+. .++|+++.-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEe
Confidence 37999999999999999998876 578888764
No 321
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=85.53 E-value=10 Score=36.25 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=59.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
++|.|.| .|++|..++.+.+...-+ +|++. .++-+++ +.++++..+.+.-.++.. +.
T Consensus 165 ~~vlV~~-~g~vg~~~~~la~~~G~~-~v~~~--~~~~~~~-~~~~~lg~~~~~~~~~~~---~~--------------- 221 (341)
T PRK05396 165 EDVLITG-AGPIGIMAAAVAKHVGAR-HVVIT--DVNEYRL-ELARKMGATRAVNVAKED---LR--------------- 221 (341)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHcCCC-EEEEE--cCCHHHH-HHHHHhCCcEEecCcccc---HH---------------
Confidence 5788876 599999999999886321 34444 3344444 456677766554322211 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (369)
+.+.++.....+|.|+++..+-..+...+.+++.+-++.+
T Consensus 222 -~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 222 -DVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred -HHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 1122233334589999976666678888888887766543
No 322
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.49 E-value=1.2 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
+|.|.|+||+||+...+-+.+. .++|+++.-.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA--GHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCC
Confidence 4999999999999999988876 7889998754
No 323
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.39 E-value=4.5 Score=37.07 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=33.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|++.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+...+.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~l 51 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAE--GCHLHLVA--RDADALEALAADL 51 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 68999999999999999999876 56777654 4556665554443
No 324
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=85.34 E-value=7 Score=36.82 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=58.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|+|++|+||..++.+.+.. ..+|++++ + .+.+++|..+.+.-. .. .
T Consensus 164 ~~vlI~g~~g~vg~~~~~~a~~~--G~~v~~~~--~-----~~~~~~~g~~~~~~~--~~---~---------------- 213 (325)
T cd08264 164 ETVVVFGASGNTGIFAVQLAKMM--GAEVIAVS--R-----KDWLKEFGADEVVDY--DE---V---------------- 213 (325)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--H-----HHHHHHhCCCeeecc--hH---H----------------
Confidence 58999999999999999999987 35677764 1 144556665544311 11 1
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (369)
.+.+.++. ..+|.|+++..+ ..+...+.+++.+-++..
T Consensus 214 ~~~l~~~~--~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~ 251 (325)
T cd08264 214 EEKVKEIT--KMADVVINSLGS-SFWDLSLSVLGRGGRLVT 251 (325)
T ss_pred HHHHHHHh--CCCCEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 11223333 358999998655 678888888887766554
No 325
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.30 E-value=4.9 Score=39.00 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~-Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.|+|+ |.||..+..+++.. ..+|++..... +-+++ +.++++..+++. ..+... .
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~-~~~~~~---~-------------- 231 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLRLR--GFEVYVLNRRDPPDPKA-DIVEELGATYVN-SSKTPV---A-------------- 231 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCeEEEEecCCCCHHHH-HHHHHcCCEEec-CCccch---h--------------
Confidence 57999996 99999999999886 45777765421 33444 467788877642 111110 0
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+ . + ....+|+|+++.-+-..+.-.+.+++.|-++
T Consensus 232 --~-~-~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 265 (355)
T cd08230 232 --E-V-K--LVGEFDLIIEATGVPPLAFEALPALAPNGVV 265 (355)
T ss_pred --h-h-h--hcCCCCEEEECcCCHHHHHHHHHHccCCcEE
Confidence 0 0 1 1236899999865444455556666655443
No 326
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=85.15 E-value=11 Score=37.30 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhC---CCceEEEEEeec-CCHHHHHHHHHhhCCCEEEEc----CchhH-HHHHHHH
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAG-SNITLLADQVKRFKPQVVAVR----NESLL-DEIKEAL 144 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~---pd~F~VvaLaag-~Nv~lL~eQ~~~FkP~~V~v~----de~~~-~~l~~~l 144 (369)
..++||+||||.+ |++...++.+. .-.++|+++.++ .++..| ++++.-.+..+. +...+ ..+.+.|
T Consensus 87 ~~~~ri~vl~Sg~--g~nl~al~~~~~~~~~~~~i~~visn~~~~~~l---A~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK13011 87 AARPKVLIMVSKF--DHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL---AAWHGIPFHHFPITPDTKPQQEAQVLDVV 161 (286)
T ss_pred ccCceEEEEEcCC--cccHHHHHHHHHcCCCCcEEEEEEECCccHHHH---HHHhCCCEEEeCCCcCchhhhHHHHHHHH
Confidence 3456999999986 88888888643 235899998774 354444 888877776542 11111 1233334
Q ss_pred hcCCCCceEEecHHHHH--HHhcCCCCCEEEE----eccCccCcHHHHHHHHcCC-----ceeeecccceeecccchhH
Q 017567 145 ANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGK-----DIALANKETLIAGGPFVLP 212 (369)
Q Consensus 145 ~~~~~~~~v~~G~~gl~--~~~~~~~~D~Vv~----AIvG~aGL~pt~~Ai~~gK-----~iaLANKEsLV~aG~li~~ 212 (369)
...+.+.-|++|---+. ++.+.. ..-++| -+.-+-|..|...|+.+|. +|=..++| +-+|+.+.+
T Consensus 162 ~~~~~Dlivlagy~~il~~~~l~~~-~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~--~D~G~Ii~Q 237 (286)
T PRK13011 162 EESGAELVVLARYMQVLSPELCRKL-AGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDD--LDEGPIIEQ 237 (286)
T ss_pred HHhCcCEEEEeChhhhCCHHHHhhc-cCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 43344455666653322 122222 123443 3566789999999999985 45566665 567888754
No 327
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.14 E-value=7 Score=36.02 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.2
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEE
Q 017567 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVAL 108 (369)
Q Consensus 76 ~kkI~ILGSTG--SIGtqTLdVI~~~pd~F~VvaL 108 (369)
.|++.|.|+|| +||..+..-+.++ .++|+..
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~--G~~vi~~ 38 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEA--GADIFFT 38 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHC--CCeEEEE
Confidence 36899999995 8999999998886 4567664
No 328
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=85.11 E-value=9.9 Score=36.04 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=56.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|+ |++|..++.+.+.... -.|+++. ++-++. +.++++..+.+.-..+.. +.+
T Consensus 169 ~~VlI~g~-g~vg~~~iqlak~~g~-~~v~~~~--~~~~~~-~~~~~~g~~~vi~~~~~~---~~~-------------- 226 (347)
T cd05278 169 STVAVIGA-GPVGLCAVAGARLLGA-ARIIAVD--SNPERL-DLAKEAGATDIINPKNGD---IVE-------------- 226 (347)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CEEEEEe--CCHHHH-HHHHHhCCcEEEcCCcch---HHH--------------
Confidence 57888765 9999999999997631 1455552 333333 455666544433222111 111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++.....+|.+++++.|-..+...+.+++.+-++.
T Consensus 227 --~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 227 --QILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIA 264 (347)
T ss_pred --HHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEE
Confidence 12222232458999998666467788888887776654
No 329
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.98 E-value=14 Score=35.10 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=56.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|++|..++.+.+.. .++|++.+.. -++ .+.++++..+.+.-..+.. +.
T Consensus 161 ~~vLI~g-~g~vG~~a~~lA~~~--g~~v~~~~~s--~~~-~~~~~~~g~~~v~~~~~~~---~~--------------- 216 (337)
T cd08261 161 DTVLVVG-AGPIGLGVIQVAKAR--GARVIVVDID--DER-LEFARELGADDTINVGDED---VA--------------- 216 (337)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCeEEEECCC--HHH-HHHHHHhCCCEEecCcccC---HH---------------
Confidence 4789997 589999999999986 5778777543 233 3455667666554222111 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
+.+.+......+|++++.+.|-..+...+..++.+-+
T Consensus 217 -~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~ 253 (337)
T cd08261 217 -ARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGR 253 (337)
T ss_pred -HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 1223333333478888886554556666666665433
No 330
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=84.96 E-value=2.4 Score=40.91 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHH
Q 017567 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 144 (369)
Q Consensus 80 ~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l 144 (369)
.|.|+||+||...++-+.++.+.++|.++.-..+...+. +...+.-......|=.+.+.+.+++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~-~~~~~~~~~~~~~Di~d~~~l~~a~ 64 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK-DLQKSGVKEYIQGDITDPESLEEAL 64 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch-hhhcccceeEEEeccccHHHHHHHh
Confidence 378999999999999999988778998887555443322 3344433323444444444454444
No 331
>PRK08303 short chain dehydrogenase; Provisional
Probab=84.95 E-value=9.8 Score=36.85 Aligned_cols=32 Identities=19% Similarity=0.059 Sum_probs=26.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|.+.|.|+|+.||..+..-+.+. .++|+.+.
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~ 39 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAA--GATVYVTG 39 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 368999999999999999998875 57777654
No 332
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=84.92 E-value=10 Score=35.08 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=56.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCc-hhHHHHHHHHhcCCCCceE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de-~~~~~l~~~l~~~~~~~~v 153 (369)
..+|.|.| +|++|..++++.++. .++ |++.+ ++-+++ +.++++..+.+.-..+ +..+.
T Consensus 130 ~~~vlI~g-~g~vg~~~~~la~~~--g~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~~-------------- 189 (312)
T cd08269 130 GKTVAVIG-AGFIGLLFLQLAAAA--GARRVIAID--RRPARL-ALARELGATEVVTDDSEAIVER-------------- 189 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEEC--CCHHHH-HHHHHhCCceEecCCCcCHHHH--------------
Confidence 35799997 689999999999987 566 55543 233343 3566666544432211 11122
Q ss_pred EecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 154 ~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.++.....+|.+++.+.+-..+...+..++.+-++.
T Consensus 190 ------l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~ 226 (312)
T cd08269 190 ------VRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLV 226 (312)
T ss_pred ------HHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 2333333458999998655456666777776654433
No 333
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=84.84 E-value=10 Score=35.65 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=55.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh-hCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~-FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|++|++|..+..+.++. .++|++++ ++-+++ +.+++ +..+.+.-..+.. +.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~~g~~~~~~~~~~~---~~-------------- 204 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL--GARVVGIA--GSDEKC-RWLVEELGFDAAINYKTPD---LA-------------- 204 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHhhcCCceEEecCChh---HH--------------
Confidence 58999999999999999999986 45776664 333333 23334 5544333222111 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+.++.. ..+|.+++...| ..+...+..++.+-++.
T Consensus 205 --~~v~~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v 241 (329)
T cd05288 205 --EALKEAAP-DGIDVYFDNVGG-EILDAALTLLNKGGRIA 241 (329)
T ss_pred --HHHHHhcc-CCceEEEEcchH-HHHHHHHHhcCCCceEE
Confidence 12223332 358899986444 56777777776654443
No 334
>PRK12747 short chain dehydrogenase; Provisional
Probab=84.76 E-value=6.5 Score=35.78 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=30.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
.|++.|.|+||.||..+.+-+.+. .++|+.+. .++.+.+.+.+
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~--G~~v~~~~-~~~~~~~~~~~ 46 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLAND--GALVAIHY-GNRKEEAEETV 46 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEc-CCCHHHHHHHH
Confidence 368999999999999999999875 56665543 34444444433
No 335
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.72 E-value=15 Score=34.87 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=60.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCc-hhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de-~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|++|++|..++.+.++. .++|++++. |-++. +.++++..+.+.-... ...+.+.
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~-------------- 227 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDV--GDEKL-ELAKELGADAFVDFKKSDDVEAVK-------------- 227 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeC--CHHHH-HHHHHcCCcEEEcCCCccHHHHHH--------------
Confidence 58999999999999999999987 457766653 33444 3446677655433221 1112222
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+......+|.|+++..+-..+...+.+++.+=++.
T Consensus 228 ------~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v 262 (341)
T cd08297 228 ------ELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLV 262 (341)
T ss_pred ------HHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEE
Confidence 22222358888886666667777777776654444
No 336
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=84.61 E-value=6.7 Score=35.22 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
|.|.|+||.||..+..-+.+. .++|+.+ +.++.+.+.+..
T Consensus 1 vlItGas~giG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~~~ 40 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAAD--GFEICVH-YHSGRSDAESVV 40 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHC--CCEEEEE-eCCCHHHHHHHH
Confidence 579999999999999999876 5676544 444544444333
No 337
>PLN02686 cinnamoyl-CoA reductase
Probab=84.55 E-value=5.1 Score=39.76 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
...|+|.|.|+||+||....+-+.+. .++|++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~--G~~V~~~~ 84 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRH--GYSVRIAV 84 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEe
Confidence 34578999999999999999988765 68888765
No 338
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=84.25 E-value=1.2 Score=42.05 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.6
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (369)
|.|.|+||+||+...+.+.++ .++++++.-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~--g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC--CCceEEEecC
Confidence 789999999999999998876 5667776543
No 339
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=84.22 E-value=10 Score=37.29 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCc----h-hHHHHHHHHh
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNE----S-LLDEIKEALA 145 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~pd---~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de----~-~~~~l~~~l~ 145 (369)
+.++||+||.|.+ |++.-+++.+..+ +.+|+++.+++ +.+...++++.-.+..+... . .-.++-+.|.
T Consensus 82 ~~~~ki~vl~Sg~--g~nl~~l~~~~~~g~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~ 157 (280)
T TIGR00655 82 DKLKRVAILVSKE--DHCLGDLLWRWYSGELDAEIALVISNH--EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLK 157 (280)
T ss_pred CCCcEEEEEEcCC--ChhHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHH
Confidence 4578999999988 9999999887543 36888887654 33445688888777766431 1 1122333343
Q ss_pred cCCCCceEEecHHHHH--HHhcCCCCCEEEEe----ccCccCcHHHHHHHHcCC-----ceeeecccceeecccchhH
Q 017567 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGK-----DIALANKETLIAGGPFVLP 212 (369)
Q Consensus 146 ~~~~~~~v~~G~~gl~--~~~~~~~~D~Vv~A----IvG~aGL~pt~~Ai~~gK-----~iaLANKEsLV~aG~li~~ 212 (369)
..+.+.-|+.|---+. ++.+..+. -++|- +.-+-|..|...|+++|. ++=..|.| +-.|+.|.+
T Consensus 158 ~~~~Dlivlagym~il~~~~l~~~~~-~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~--lD~GpII~Q 232 (280)
T TIGR00655 158 QYQVDLVVLAKYMQILSPDFVKRYPN-KIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEE--LDEGPIIEQ 232 (280)
T ss_pred HhCCCEEEEeCchhhCCHHHHhhccC-CEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCC--CcCCCeEEE
Confidence 3334445555543221 12222211 23432 456889999999999995 45556655 467887754
No 340
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=83.95 E-value=2.6 Score=43.77 Aligned_cols=92 Identities=25% Similarity=0.394 Sum_probs=58.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe-ecCCHHHHHHHHHhhCCC--------EEEEcCchhHHHHHHHHhcCC
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA-AGSNITLLADQVKRFKPQ--------VVAVRNESLLDEIKEALANVE 148 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa-ag~Nv~lL~eQ~~~FkP~--------~V~v~de~~~~~l~~~l~~~~ 148 (369)
-++|+||||+-|+-+.+-..+.. .|+-..++ ||+|-++|.+-.++-.-+ .+.++|-+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~-~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~------------- 72 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQ-VFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSA------------- 72 (423)
T ss_pred eEEEEccccccceeeHHHHhhhh-cccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCC-------------
Confidence 58999999999999888766532 56666664 689999998776654221 12222211
Q ss_pred CCceEEecHHHHHHHhcCCCCCEEEEeccC---ccCcHHHHHHHHcCC
Q 017567 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVG---CAGLKPTVAAIEAGK 193 (369)
Q Consensus 149 ~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG---~aGL~pt~~Ai~~gK 193 (369)
.++.+.|||+. +-+|||+ || +.|=.-..++|++|.
T Consensus 73 -------n~~Sl~emak~--~~vivN~-vGPyR~hGE~VVkacienG~ 110 (423)
T KOG2733|consen 73 -------NEASLDEMAKQ--ARVIVNC-VGPYRFHGEPVVKACIENGT 110 (423)
T ss_pred -------CHHHHHHHHhh--hEEEEec-cccceecCcHHHHHHHHcCC
Confidence 24566667664 4456665 44 344445666777775
No 341
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.82 E-value=7.8 Score=35.83 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=32.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|+|+|.|. |.+|..+..-+.++ ..+|++ ...|.+.+.+...+|
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~~--G~~Vvv--~D~~~~~~~~~~~~~ 71 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEE--GAKLIV--ADINEEAVARAAELF 71 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEE--EcCCHHHHHHHHHHc
Confidence 67999999 79999999988876 577873 456666665555544
No 342
>PRK08324 short chain dehydrogenase; Validated
Probab=83.81 E-value=8.2 Score=41.78 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=34.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
|++.|.|+||.||..+...+.+. .++|+.+. +|-+.+.+...++.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~--r~~~~~~~~~~~l~ 467 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAE--GACVVLAD--LDEEAAEAAAAELG 467 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEe--CCHHHHHHHHHHHh
Confidence 68999999999999999999876 46777654 45566655555544
No 343
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=83.80 E-value=14 Score=36.74 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=64.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhH-HHHHHHHhc-CCCC-ceE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL-DEIKEALAN-VEEK-PEI 153 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~-~~l~~~l~~-~~~~-~~v 153 (369)
.+|.|.|++|.||..++.+.+.+ ..+++.++ .+-+++ +.++++...++.-.++... ..+.+.... .... .+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~--~~~~~~-~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAG--GGNPVAVV--SSPEKA-EYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSF 265 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEc--CCHHHH-HHHHHcCCCEEecCCCcchhhccccccccccchhhhcc
Confidence 58999999999999999999987 46676665 333443 5667787776653222110 001000000 0000 000
Q ss_pred EecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 154 ~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
..-.+.+.++.....+|.|++.. |...+..++.+++.+=++
T Consensus 266 ~~~~~~~~~~~~~~g~d~vld~~-g~~~~~~~~~~l~~~G~~ 306 (398)
T TIGR01751 266 KRFGKRIRELTGGEDPDIVFEHP-GRATFPTSVFVCRRGGMV 306 (398)
T ss_pred hhHHHHHHHHcCCCCceEEEECC-cHHHHHHHHHhhccCCEE
Confidence 11123444444445699999985 446677788887766443
No 344
>PRK07856 short chain dehydrogenase; Provisional
Probab=83.64 E-value=8.8 Score=35.00 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
.|++.|.|+||.||..+.+.+.+. .++|+.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~--g~~v~~~~ 37 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAA--GATVVVCG 37 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 378999999999999999998875 56776653
No 345
>PLN02780 ketoreductase/ oxidoreductase
Probab=83.49 E-value=7.5 Score=37.98 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=33.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
+.+.|.|+||-||.....-+.+. .++|+.+ .+|.+.|.+.+++.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~--G~~Vil~--~R~~~~l~~~~~~l 97 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARK--GLNLVLV--ARNPDKLKDVSDSI 97 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCCEEEE--ECCHHHHHHHHHHH
Confidence 57999999999999999888875 5677664 35677766555443
No 346
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.45 E-value=8.2 Score=37.87 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
.+++.|+|. |-+|.++...++++. .+|... .++.+. .++++++.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~G--a~V~v~--~r~~~~-~~~~~~~G 195 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALG--ANVTVG--ARKSAH-LARITEMG 195 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC--CEEEEE--ECCHHH-HHHHHHcC
Confidence 578999996 889999999999873 455553 445554 35566554
No 347
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=83.42 E-value=12 Score=35.60 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
..+|.|.| .|++|..++.+.++. ..+ |++.+. +-++. +..+++..+.+.-.++.. +
T Consensus 166 g~~VlV~g-~g~vg~~~~~la~~~--g~~~v~~~~~--s~~~~-~~~~~~g~~~~~~~~~~~---~-------------- 222 (343)
T cd08235 166 GDTVLVIG-AGPIGLLHAMLAKAS--GARKVIVSDL--NEFRL-EFAKKLGADYTIDAAEED---L-------------- 222 (343)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEECC--CHHHH-HHHHHhCCcEEecCCccC---H--------------
Confidence 35899997 589999999988876 345 554433 22332 233566665543322211 1
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.+.++.....+|.|++.+.|-..+...+.+++.+-++.
T Consensus 223 --~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 223 --VEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRIL 262 (343)
T ss_pred --HHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 1122333333458999998776667777888887765543
No 348
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.39 E-value=12 Score=37.65 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=55.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|.||..++.+.+.. ..+++. +...+-+++ ++++++....+....+... .
T Consensus 187 ~~VlV~G-~G~iG~~aiqlAk~~--Ga~~vi-~~d~~~~r~-~~a~~~Ga~~v~~~~~~~~---~--------------- 243 (393)
T TIGR02819 187 STVYIAG-AGPVGLAAAASAQLL--GAAVVI-VGDLNPARL-AQARSFGCETVDLSKDATL---P--------------- 243 (393)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCceEE-EeCCCHHHH-HHHHHcCCeEEecCCcccH---H---------------
Confidence 4788855 599999999998876 455544 333444443 5677787653221111111 1
Q ss_pred HHHHHHHhcCCCCCEEEEeccCc--------------cCcHHHHHHHHcCCceee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGC--------------AGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~--------------aGL~pt~~Ai~~gK~iaL 197 (369)
+.+.++.....+|+|++++-+- ..+.-.+.+++.|=+|.+
T Consensus 244 -~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 244 -EQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred -HHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 1222222223589999975543 256667777777766543
No 349
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=83.28 E-value=7.2 Score=40.29 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=31.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~ 121 (369)
.|++.|.|+||.||....+-+.+. .++|++++ +|.+.+.+..
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~--G~~Vi~l~--r~~~~l~~~~ 219 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ--GAKVVALT--SNSDKITLEI 219 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 468999999999999999888765 57888765 3445554433
No 350
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=83.09 E-value=14 Score=34.74 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=53.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..++.+.+.. ..+|++.+ .+-+++ +.++++..+.+.-.++...
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~------------------- 197 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKAL--GAKLIGTV--GSAQKA-QRAKKAGAWQVINYREENI------------------- 197 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHHCCCCEEEcCCCCcH-------------------
Confidence 58999999999999999999987 45676654 233333 3346666655443222111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
.+.+.++.....+|.+++.+.| ..+...+..++.+
T Consensus 198 ~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~ 232 (327)
T PRK10754 198 VERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR 232 (327)
T ss_pred HHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC
Confidence 1122233332347888887544 4455555666544
No 351
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=83.03 E-value=11 Score=38.35 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=48.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeec--------------CCHHHHHHHHHhhCCCEEEEcCch
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNES 135 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaag--------------~Nv~lL~eQ~~~FkP~~V~v~de~ 135 (369)
..+++.|+|+ |.-|.+.++-++++|+ .|+++|..-. .+.+.+.+.+++.+.+.|.++.+.
T Consensus 124 ~~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~ 198 (445)
T TIGR03025 124 NLRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPL 198 (445)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCc
Confidence 3468999996 7788999998888775 6999997542 256789999999999999887654
No 352
>PRK06720 hypothetical protein; Provisional
Probab=83.00 E-value=15 Score=33.05 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=38.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEE-EEcCchhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~--Nv~lL~eQ~~~FkP~~V-~v~de~~~~~l~~ 142 (369)
.|.+.|.|++|.||......+.+. .++|+... .+ +.+...++..+..++.. ...|-...+.+++
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~~-r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 82 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVTD-IDQESGQATVEEITNLGGEALFVSYDMEKQGDWQR 82 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEE-CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 468999999999999999988875 46665443 22 22333344444444433 2345444445544
No 353
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.86 E-value=13 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=25.5
Q ss_pred eeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTG--SIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|+|.|.|+|| .||.+...-+.+. .++|+.+.
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~--G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAK--GIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHc--CCcEEEEc
Confidence 6899999996 6999999888876 57787664
No 354
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=82.84 E-value=13 Score=35.38 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=58.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|++|..++++.+.. .++|+.+...++-+++ +.++++..+.+ -..+..+ .
T Consensus 166 ~~vlI~g-~g~~g~~~~~la~~~--G~~v~~~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~---~--------------- 222 (306)
T cd08258 166 DTVVVFG-PGPIGLLAAQVAKLQ--GATVVVVGTEKDEVRL-DVAKELGADAV-NGGEEDL---A--------------- 222 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCEEEEECCCCCHHHH-HHHHHhCCccc-CCCcCCH---H---------------
Confidence 5788855 799999999999987 4667665445554444 45566664433 1111111 1
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+.++.....+|.+++.+.+-..+...+..++.+-++.
T Consensus 223 -~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v 261 (306)
T cd08258 223 -ELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIV 261 (306)
T ss_pred -HHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 112222333458999998655566777777777665544
No 355
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=82.83 E-value=7.6 Score=38.46 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhC-CCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~-pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
+||+|+|. |.||+...+-+.+- .+.|+++++ ..++.++-.+.+.. ++ .+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V-~~~~~~~~~~~~~~--~~--~~------------------------ 52 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQPCQLAAL-TRNAADLPPALAGR--VA--LL------------------------ 52 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCCceEEEEE-ecCCHHHHHHhhcc--Cc--cc------------------------
Confidence 58999997 99999988877764 456999998 45555444333322 11 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeee------cccceeecccchhHHhhhcCCeEeecccchh
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA------NKETLIAGGPFVLPLAHKHNIKILPADSEHS 229 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLA------NKEsLV~aG~li~~~a~k~~~~IlPVDSEHs 229 (369)
+.+.+++. .++|+||.+-+=-+=-+-....|++|+++.+. +++.. .-+.+.|+++|.+|+-- .-
T Consensus 53 --~~l~~ll~-~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~----~~l~~~A~~~g~~i~ip---SG 122 (267)
T PRK13301 53 --DGLPGLLA-WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALR----ARLIAAAEAGGARIRVP---AG 122 (267)
T ss_pred --CCHHHHhh-cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHH----HHHHHHHHhCCCEEEEe---Ch
Confidence 12334432 35888888744433334455677778887543 22211 12355778888777642 34
Q ss_pred hH--HHhhcCCCCCccceEEEeecCCC
Q 017567 230 AI--FQCIQGLPEGALRRIILTASGGA 254 (369)
Q Consensus 230 AI--fQ~L~g~~~~~v~kiiLTASGGP 254 (369)
|| ++.|+.-....+.++.+|.--.|
T Consensus 123 AigGlD~l~aa~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 123 AIAGLDYLQAVAGRDDAEVVYESRKPV 149 (267)
T ss_pred HHHhHHHHHHhhccCceEEEEEEecCh
Confidence 55 35666544556888888877666
No 356
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.77 E-value=14 Score=35.51 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=54.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.| .|++|..++.+.+... .+ |++.+. +-++ .++++++..+.+.-.++....++.+
T Consensus 164 ~~vlI~g-~g~vG~~a~~lak~~G--~~~v~~~~~--~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~------------- 224 (343)
T cd05285 164 DTVLVFG-AGPIGLLTAAVAKAFG--ATKVVVTDI--DPSR-LEFAKELGATHTVNVRTEDTPESAE------------- 224 (343)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcC--CcEEEEECC--CHHH-HHHHHHcCCcEEeccccccchhHHH-------------
Confidence 5788876 5899999999999863 34 444432 2222 3455666655544332222111111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
.+.+......+|+|++.+.+-..+...+..++.+-++
T Consensus 225 ---~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 261 (343)
T cd05285 225 ---KIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTV 261 (343)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 1222223335899999755444666677777765443
No 357
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.54 E-value=17 Score=33.43 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=34.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
.+||+|+| +|.+|+.-..-+.++. ..++.+.+..++|.+.+.+..+++.
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 53 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN 53 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC
Confidence 35799999 6999998888776653 3454333445567788877777775
No 358
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=82.45 E-value=14 Score=36.39 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=62.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchh-HHHHHHHHhcCCCCc----
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKP---- 151 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~-~~~l~~~l~~~~~~~---- 151 (369)
.+|.|.|++|+||..++.+.+.. .+++++++ ++-+++ ++++++..+.+.-.++.. ...... + +.+...
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~--~s~~~~-~~~~~~G~~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~ 267 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA--GANPVAVV--SSEEKA-EYCRALGAEGVINRRDFDHWGVLPD-V-NSEAYTAWTK 267 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEEe--CCHHHH-HHHHHcCCCEEEccccccccccccc-c-cchhhhhhhh
Confidence 48999999999999999999987 56677654 344554 566778766554322110 000000 0 000000
Q ss_pred eEEecHHHHHHHhcCC-CCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 152 EILAGEQGVIEAARHP-DAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 152 ~v~~G~~gl~~~~~~~-~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
....-.+.+.++.... .+|+|++.. |...+...+..++.+=++
T Consensus 268 ~~~~~~~~v~~l~~~~~g~d~vid~~-g~~~~~~~~~~l~~~G~~ 311 (393)
T cd08246 268 EARRFGKAIWDILGGREDPDIVFEHP-GRATFPTSVFVCDRGGMV 311 (393)
T ss_pred ccchHHHHHHHHhCCCCCCeEEEECC-chHhHHHHHHHhccCCEE
Confidence 0000123455555444 699999984 446677777777665443
No 359
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.40 E-value=11 Score=38.85 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=99.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
+-|+.|+|+ |.|+.--+..+-.-| -+++|+|+++. ..+.-.+-++.++-. +++++
T Consensus 6 ~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~----------------------~~k~y 61 (351)
T KOG2741|consen 6 TIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIP----------------------NPKAY 61 (351)
T ss_pred eeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCC----------------------CCccc
Confidence 458999987 456655555555455 37999999988 456655555555421 13343
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeec--ccchhHHhhhcCCeEe-ecccchhhH
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKIL-PADSEHSAI 231 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~a--G~li~~~a~k~~~~Il-PVDSEHsAI 231 (369)
. +.+++++.+++|+|+.++-=.-=-+-..-++.+||-|.+ -|=.-... -.-|.++|++.|+.+. =.=+-|+=.
T Consensus 62 ~---syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~-EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~ 137 (351)
T KOG2741|consen 62 G---SYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLC-EKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPR 137 (351)
T ss_pred c---CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEe-cccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcH
Confidence 2 567788999999999998777777778889999998543 22111111 1224567888886654 344455544
Q ss_pred HHhhc----CCCCCccceEEEeecCCCCCC
Q 017567 232 FQCIQ----GLPEGALRRIILTASGGAFRD 257 (369)
Q Consensus 232 fQ~L~----g~~~~~v~kiiLTASGGPFr~ 257 (369)
++-|+ +..-.+|+.+.+ .=|+||+.
T Consensus 138 ~~~lke~l~~~~~Gdvk~v~~-~~~f~~~~ 166 (351)
T KOG2741|consen 138 YAKLKELLSSGVLGDVKSVEV-EFGFPFPE 166 (351)
T ss_pred HHHHHHHHhccccccceEEEE-ecCCCcch
Confidence 44443 445678999999 67788873
No 360
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.37 E-value=11 Score=35.18 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=40.7
Q ss_pred eeEEEEec--CChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 77 KPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGS--TGSIGtqTLdVI~~~pd~F~VvaLaa-g~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
|.+.|.|+ |+-||..+..-+.+. .++|+...- .++.+.+.+..+++....+...|-.+.+.+++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 74 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDAL 74 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHC--CCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHH
Confidence 68999996 567999998888775 466665421 245677766666664333333454444445443
No 361
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=82.32 E-value=14 Score=36.23 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=58.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|+||..++.+.+.. ..+|++++ ++-+++.+..+++..+.+....+. ..+
T Consensus 182 ~~vlV~G-~G~vG~~av~~Ak~~--G~~vi~~~--~~~~~~~~~~~~~Ga~~~i~~~~~--~~~---------------- 238 (357)
T PLN02514 182 LRGGILG-LGGVGHMGVKIAKAM--GHHVTVIS--SSDKKREEALEHLGADDYLVSSDA--AEM---------------- 238 (357)
T ss_pred CeEEEEc-ccHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHhcCCcEEecCCCh--HHH----------------
Confidence 4788997 599999999999987 45676654 344555556667776544322111 111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.. ..+|.|++++-+...+...+.+++.|-++.
T Consensus 239 ----~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv 272 (357)
T PLN02514 239 ----QEAA--DSLDYIIDTVPVFHPLEPYLSLLKLDGKLI 272 (357)
T ss_pred ----HHhc--CCCcEEEECCCchHHHHHHHHHhccCCEEE
Confidence 1111 248999998655567777777777765543
No 362
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=82.12 E-value=15 Score=35.30 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=56.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCch-hHHHHHHHHhcCCCCceEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~-~~~~l~~~l~~~~~~~~v~ 154 (369)
.+|.| +++|++|..++.+.+..- .. +++. .++-+++ +.++++..+.+.-..+. ..++
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G--~~~v~~~--~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~--------------- 234 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKN--PKKLIVL--DLKDERL-ALARKFGADVVLNPPEVDVVEK--------------- 234 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcC--CcEEEEE--cCCHHHH-HHHHHcCCcEEecCCCcCHHHH---------------
Confidence 46777 667999999999998863 33 3332 3444554 46677766554322211 1122
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.++.....+|++++.+.|-..+...+.+++.+-++
T Consensus 235 -----~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~ 270 (350)
T cd08256 235 -----IKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRF 270 (350)
T ss_pred -----HHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 222333335899999876556677788888776554
No 363
>PLN02996 fatty acyl-CoA reductase
Probab=82.07 E-value=1.9 Score=45.10 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCeeEEEEecCChHhHHHHHH-HHhCCCceEEEEEee
Q 017567 74 DGPKPISVLGSTGSIGTQTLDI-VAEHEDKFRVVALAA 110 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdV-I~~~pd~F~VvaLaa 110 (369)
=..|+|.|.|+||+||+-.++- ++..|+.-+|.+|.=
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR 46 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLR 46 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 3457899999999999999976 566788888999884
No 364
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.99 E-value=15 Score=35.15 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=54.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|+| +|+||..+..+.+.. .++|++++. +-+.+ +.++++..+++.-..+.. +.+
T Consensus 165 ~~vlV~g-~g~iG~~~~~~a~~~--G~~vi~~~~--~~~~~-~~~~~~g~~~~i~~~~~~---~~~-------------- 221 (333)
T cd08296 165 DLVAVQG-IGGLGHLAVQYAAKM--GFRTVAISR--GSDKA-DLARKLGAHHYIDTSKED---VAE-------------- 221 (333)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEeC--ChHHH-HHHHHcCCcEEecCCCcc---HHH--------------
Confidence 5899999 899999999999986 456766543 44444 345777766554322211 111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+.++ ..+|.++++..+-..+...+.+++.+=+
T Consensus 222 --~~~~~---~~~d~vi~~~g~~~~~~~~~~~l~~~G~ 254 (333)
T cd08296 222 --ALQEL---GGAKLILATAPNAKAISALVGGLAPRGK 254 (333)
T ss_pred --HHHhc---CCCCEEEECCCchHHHHHHHHHcccCCE
Confidence 11111 2478888875434556666666665543
No 365
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=81.81 E-value=13 Score=34.53 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=37.2
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEee----cCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA----GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaa----g~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
|.+.|.|+| +-||..+-.-+.+. .++|+...- .++.+.+.+...+..+-.+...|-.+.+.+++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEET 77 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHH
Confidence 689999987 67999999888875 566654321 133344443333333222333454444444443
No 366
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=81.61 E-value=17 Score=35.58 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=55.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|.|.|+ |++|..++.+.+.. .++ |++.. ++-+++ +.++++..+.+.-.++... .
T Consensus 188 ~~vlI~g~-g~vG~~~~~la~~~--G~~~v~~~~--~~~~k~-~~~~~~g~~~~i~~~~~~~---~-------------- 244 (365)
T cd08278 188 SSIAVFGA-GAVGLAAVMAAKIA--GCTTIIAVD--IVDSRL-ELAKELGATHVINPKEEDL---V-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHcCCcEEecCCCcCH---H--------------
Confidence 58999975 99999999999987 343 44433 233444 4567777665543322111 1
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.+.++. ...+|.|++++-+-..+...+..++.+-++
T Consensus 245 --~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 281 (365)
T cd08278 245 --AAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPRGTL 281 (365)
T ss_pred --HHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccCCEE
Confidence 1122333 335899999864444556666666655443
No 367
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.49 E-value=17 Score=33.70 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=38.2
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecCC--HHHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaag~N--v~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
|.+.|.|++ +-||..+..-+.+. .++|+.. +.+. .+.+.+..+++....+.-.|-.+.+.+++.
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRAL--GAELAVT-YLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAV 78 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEE-eCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHH
Confidence 689999988 48999999998875 5666543 3321 233555555554223333454444444443
No 368
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=81.43 E-value=13 Score=38.81 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=64.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHH------hhCCCEEEEcCchhHHHHHHHHhcCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaag~Nv~lL~eQ~~------~FkP~~V~v~de~~~~~l~~~l~~~~~ 149 (369)
.||+|.|. |=||+..|+++.+.+ ..++|+++---...+.++.+.+ .|+.+. ...++.. +.-.+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v-~~~~g~~-------l~v~gk 131 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADV-KPVGDDA-------ISVDGK 131 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcE-EEecCCE-------EEECCE
Confidence 48999999 999999999987653 4689998865455666654443 222211 1111100 110112
Q ss_pred CceEEecHHHHHHHh-cCCCCCEEEEeccCccCcHHHHHHHHcC-Cceeee
Q 017567 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (369)
Q Consensus 150 ~~~v~~G~~gl~~~~-~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaLA 198 (369)
.+.++. +....++- ...++|+|+.+--.+.--.-.-.++++| |+|-+.
T Consensus 132 ~I~v~~-~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 132 VIKVVS-DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred EEEEEE-cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 233432 12222221 2247999999865565555556688888 555554
No 369
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=81.38 E-value=14 Score=33.62 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=53.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..+..+.+.. ..+|+..+-.. +. .+.++++....+.-..+.. +
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~~---~---------------- 196 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSE--EK-LALARALGADHVIDYRDPD---L---------------- 196 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCH--HH-HHHHHHcCCceeeecCCcc---H----------------
Confidence 58999999999999999999876 45566654332 22 2233445433322111111 1
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+.+.++.....+|.+++.+.| ..+...+.+++.+-+
T Consensus 197 ~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~ 233 (323)
T cd08241 197 RERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWGGR 233 (323)
T ss_pred HHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccCCE
Confidence 1122333333458999987655 666666666655433
No 370
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=81.35 E-value=17 Score=35.59 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=56.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
..+|.|+|+ |+||..++.+.+.. .. +|+++. .+-+++ +.++++..+.+.-..+.. +.+.+
T Consensus 187 g~~VlV~G~-G~vG~~a~~~ak~~--G~~~vi~~~--~~~~~~-~~~~~lGa~~~i~~~~~~-~~~~~------------ 247 (368)
T cd08300 187 GSTVAVFGL-GAVGLAVIQGAKAA--GASRIIGID--INPDKF-ELAKKFGATDCVNPKDHD-KPIQQ------------ 247 (368)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHcCCCEEEcccccc-hHHHH------------
Confidence 358999985 99999999999986 34 465554 344454 356778776654222110 01111
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (369)
.+.++... .+|.|++++-+...+.-.+.+++.
T Consensus 248 ----~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~ 279 (368)
T cd08300 248 ----VLVEMTDG-GVDYTFECIGNVKVMRAALEACHK 279 (368)
T ss_pred ----HHHHHhCC-CCcEEEECCCChHHHHHHHHhhcc
Confidence 12222222 589999986665677777777754
No 371
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=81.28 E-value=4 Score=46.83 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.6
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC--CceEEEEEeecCC
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSN 113 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~p--d~F~VvaLaag~N 113 (369)
..+++|.|.|+||+||...++-+.+.+ ..++|+++.-..+
T Consensus 969 ~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~ 1010 (1389)
T TIGR03443 969 STPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKS 1010 (1389)
T ss_pred CCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCC
Confidence 346789999999999999998877765 5789999876433
No 372
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=81.08 E-value=17 Score=34.54 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=52.4
Q ss_pred eeEEEE-ecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchh-HHHHHHHHhcCCCCceEE
Q 017567 77 KPISVL-GSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKPEIL 154 (369)
Q Consensus 77 kkI~IL-GSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~-~~~l~~~l~~~~~~~~v~ 154 (369)
.++.|. |++|++|..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.++.. .+.
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~i~~~~~~~~~~--------------- 203 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKAD--GIKVINIVR--RKEQ-VDLLKKIGAEYVLNSSDPDFLED--------------- 203 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCcEEEECCCccHHHH---------------
Confidence 356666 99999999999998876 456776543 3334 3455677766655433211 112
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
+.++.....+|+|++++.| ......+.+++.|
T Consensus 204 -----v~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~ 235 (324)
T cd08291 204 -----LKELIAKLNATIFFDAVGG-GLTGQILLAMPYG 235 (324)
T ss_pred -----HHHHhCCCCCcEEEECCCc-HHHHHHHHhhCCC
Confidence 2223332358899987544 3334445555444
No 373
>PRK05599 hypothetical protein; Provisional
Probab=80.87 E-value=16 Score=33.61 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|.+.|.|+|+-||.....-+.+ .++|+.++ +|.+.+.+.+++.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~---g~~Vil~~--r~~~~~~~~~~~l 43 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH---GEDVVLAA--RRPEAAQGLASDL 43 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC---CCEEEEEe--CCHHHHHHHHHHH
Confidence 4689999999999999887763 57776543 4566665554444
No 374
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=80.84 E-value=23 Score=33.00 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=55.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|++|..++.+.+.. ..+|+..+. +-+++ +.++++..+.+.-.++ .. .
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~--~~--~--------------- 203 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKL--GYTVVALTG--KEEQA-DYLKSLGASEVLDRED--LL--D--------------- 203 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHhcCCcEEEcchh--HH--H---------------
Confidence 47999999999999999998876 345655543 33443 3446676655532211 10 0
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+.+......+|.|++...| ..+...+.++..+-+
T Consensus 204 --~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~ 238 (325)
T cd05280 204 --ESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYGGV 238 (325)
T ss_pred --HHHHHhcCCCccEEEECCch-HHHHHHHHhhcCCCE
Confidence 01111222348999988665 677777877765433
No 375
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.78 E-value=1.5 Score=43.70 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=31.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-----CceEEEEEeecCCHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHE-----DKFRVVALAAGSNITLLAD 119 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~p-----d~F~VvaLaag~Nv~lL~e 119 (369)
|-||+|.|+||+||.+...-+...+ +.++|+.+--..+.+++..
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g 50 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG 50 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc
Confidence 5689999999999999888776543 2358888766555444433
No 376
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.70 E-value=10 Score=37.28 Aligned_cols=91 Identities=13% Similarity=0.272 Sum_probs=56.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
++|.|.|+ |.||..++.+.+.. ..+|++++. +-++..+.++++..+.+.-..+ .+.+
T Consensus 185 ~~VlV~G~-G~vG~~avq~Ak~~--Ga~vi~~~~--~~~~~~~~~~~~Ga~~vi~~~~--~~~~---------------- 241 (360)
T PLN02586 185 KHLGVAGL-GGLGHVAVKIGKAF--GLKVTVISS--SSNKEDEAINRLGADSFLVSTD--PEKM---------------- 241 (360)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeC--CcchhhhHHHhCCCcEEEcCCC--HHHH----------------
Confidence 47888776 99999999999987 456766543 2345556677787765542211 1111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.++. ..+|+|+++..+...+...+..++.|=++.
T Consensus 242 ----~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 242 ----KAAI--GTMDYIIDTVSAVHALGPLLGLLKVNGKLI 275 (360)
T ss_pred ----Hhhc--CCCCEEEECCCCHHHHHHHHHHhcCCcEEE
Confidence 1111 147999998554344666677776665543
No 377
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=80.69 E-value=11 Score=41.11 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=32.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+...++
T Consensus 415 kvvLVTGasggIG~aiA~~La~~--Ga~Vvi~~--r~~~~~~~~~~~l 458 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAE--GAHVVLAD--LNLEAAEAVAAEI 458 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 68999999999999999988875 56777664 4555555444443
No 378
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=80.56 E-value=12 Score=37.07 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=26.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (369)
||+|.|+||-.|+.+.+-+.+ +.|++|+.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~--~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADA--AGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhc--CCCEEEee
Confidence 799999999999999999988 46999996
No 379
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=80.48 E-value=13 Score=38.55 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=103.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
+.-+.|.|+||+.|.=+.+-+.+.-.+ +.-|++|.++|-....++.|+.... + +..
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~----~aLAgRs~~kl~~l~~~LG~~~~~~----------------p----~~~ 61 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLT----AALAGRSSAKLDALRASLGPEAAVF----------------P----LGV 61 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCc----hhhccCCHHHHHHHHHhcCcccccc----------------C----CCC
Confidence 347999999999999999888875333 3456789999999998888876442 1 111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccC---ccCcHHHHHHHHcCCceeeecccceeeccc--chhHHhhhcCCeEeec---ccc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVG---CAGLKPTVAAIEAGKDIALANKETLIAGGP--FVLPLAHKHNIKILPA---DSE 227 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG---~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~--li~~~a~k~~~~IlPV---DSE 227 (369)
+.++.++++. +++|+|- || -.|+.-.-+++.+|-+-+=-.-|..++==. +--+.|++.|+.|+|- ||=
T Consensus 62 -p~~~~~~~~~--~~VVlnc-vGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsI 137 (382)
T COG3268 62 -PAALEAMASR--TQVVLNC-VGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSI 137 (382)
T ss_pred -HHHHHHHHhc--ceEEEec-cccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcC
Confidence 6778888864 7788876 44 246666677889998877777777665311 1134677889999884 766
Q ss_pred hhh--HHHhhcCCCCC------ccceEEEeecCCCCCC
Q 017567 228 HSA--IFQCIQGLPEG------ALRRIILTASGGAFRD 257 (369)
Q Consensus 228 HsA--IfQ~L~g~~~~------~v~kiiLTASGGPFr~ 257 (369)
-+- +++|++-..+. ..+-++..-+|+-+-.
T Consensus 138 PsDl~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~ 175 (382)
T COG3268 138 PSDLGVYALLKQALPDGTEELIATHLALGSFTGSGISG 175 (382)
T ss_pred ccchHHHHHHHhhCcccccchhhhheeeeecccCCccc
Confidence 554 47877754444 3344455555543333
No 380
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=80.38 E-value=18 Score=34.02 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=60.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++|++|..++.+.+..- ..+|++.+... +.+ +.++++..+.+.-..+ . +.+.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G-~~~v~~~~~~~--~~~-~~~~~~g~~~~~~~~~-~---~~~~------------ 209 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRP--ESI-AWVKELGADHVINHHQ-D---LAEQ------------ 209 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcC-CcEEEEEcCCh--hhH-HHHHhcCCcEEEeCCc-c---HHHH------------
Confidence 3589999999999999999998862 16777765432 222 3346677655432111 1 1111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (369)
+... ....+|.+++.+.|-..+...+.+++.+-++..
T Consensus 210 ----i~~~-~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~ 246 (336)
T cd08252 210 ----LEAL-GIEPVDYIFCLTDTDQHWDAMAELIAPQGHICL 246 (336)
T ss_pred ----HHhh-CCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEE
Confidence 1111 123589999887666677888888877655443
No 381
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=80.36 E-value=7.2 Score=40.05 Aligned_cols=101 Identities=32% Similarity=0.378 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh------CCCEEEEcCchhHHHHHHHHhcCCCCceEEecHHHHHHHh
Q 017567 91 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF------KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA 164 (369)
Q Consensus 91 qTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F------kP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~~ 164 (369)
+.|..++++ +.+|+.=+++.|-.-+++.+++. +.+.++|..+...+.+++.+.. +..+.-+...+-+.+.
T Consensus 62 ~~L~~~~~~--gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~~-g~~~~~l~~~~~l~~~- 137 (362)
T PF07287_consen 62 PLLPAAAEK--GIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEVKELLAE-GETIRPLDTGPPLSEW- 137 (362)
T ss_pred HHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHhC-CCCCccCCCCCCcchh-
Confidence 566666665 66677767777876666665542 4577777777777777766542 1111111111112111
Q ss_pred cCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecc
Q 017567 165 RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200 (369)
Q Consensus 165 ~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANK 200 (369)
..+ +..++...|-.|..+||+.|-+|-++=.
T Consensus 138 ---~~~--~~~a~aylGa~pI~~AL~~GADIVI~GR 168 (362)
T PF07287_consen 138 ---DDR--IVSANAYLGAEPIVEALEAGADIVITGR 168 (362)
T ss_pred ---ccc--cceEEEecChHHHHHHHHcCCCEEEeCc
Confidence 111 5577889999999999999988766543
No 382
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.32 E-value=17 Score=34.23 Aligned_cols=64 Identities=11% Similarity=-0.051 Sum_probs=38.8
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEEEEcCchhHHHHHH
Q 017567 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (369)
Q Consensus 76 ~kkI~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaag~--Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~ 142 (369)
.|.+.|.|++ +-||..+-+.+.+. .++|+. ++++ +.+.+.+..+++.-......|-.+.+.+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~--G~~V~l-~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAA--GAELAF-TYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDA 77 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEE-EcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHH
Confidence 3689999997 66999999888875 677754 4432 235555555554322333344444444443
No 383
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=80.23 E-value=17 Score=34.54 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=53.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.| +|++|..++.+.+.. .+ +|++.. ++-++. +.++++.-..+...+++..
T Consensus 169 ~~vlI~g-~g~vg~~~~~~a~~~--g~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~------------------ 224 (344)
T cd08284 169 DTVAVIG-CGPVGLCAVLSAQVL--GAARVFAVD--PVPERL-ERAAALGAEPINFEDAEPV------------------ 224 (344)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCceEEEEc--CCHHHH-HHHHHhCCeEEecCCcCHH------------------
Confidence 6899997 799999999999986 44 566652 233333 3345555322111111111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
+.+.++.....+|+++++..+-..+...+..++.+-+
T Consensus 225 --~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~ 261 (344)
T cd08284 225 --ERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGV 261 (344)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 1223333334589999987665667777777765543
No 384
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=80.06 E-value=11 Score=34.75 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=42.6
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--------------CHHHHHHHHHhhCCCEEEEcCc
Q 017567 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--------------NITLLADQVKRFKPQVVAVRNE 134 (369)
Q Consensus 72 ~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~--------------Nv~lL~eQ~~~FkP~~V~v~de 134 (369)
.+...++|+|+|+ |.+|....+........|+++|+.... ..+.+.+.+++.+++.|.++-+
T Consensus 80 ~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P 155 (213)
T PRK05472 80 GLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVP 155 (213)
T ss_pred CCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCC
Confidence 4455678999995 889998877644323469999985321 2456667777777777777654
No 385
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=80.02 E-value=11 Score=36.37 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=23.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (369)
||.|.|+||.||.+..+-+.+...+ .|+++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~-~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCC-eEEEe
Confidence 6999999999999999999875322 34444
No 386
>PRK08309 short chain dehydrogenase; Provisional
Probab=79.95 E-value=39 Score=30.71 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=33.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-C-CEEEE-cCchhHHHHHHHH
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P-QVVAV-RNESLLDEIKEAL 144 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk-P-~~V~v-~de~~~~~l~~~l 144 (369)
++.|+|+||.+|. ...-+.+. .|+|..++ ++-+.+.+...+.. + +..++ .|-.+.+.++..+
T Consensus 2 ~vlVtGGtG~gg~-la~~L~~~--G~~V~v~~--R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i 66 (177)
T PRK08309 2 HALVIGGTGMLKR-VSLWLCEK--GFHVSVIA--RREVKLENVKRESTTPESITPLPLDYHDDDALKLAI 66 (177)
T ss_pred EEEEECcCHHHHH-HHHHHHHC--cCEEEEEE--CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHH
Confidence 6899999998876 44444433 57887654 45555544443331 2 22221 3444455555543
No 387
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=79.76 E-value=21 Score=33.49 Aligned_cols=91 Identities=22% Similarity=0.279 Sum_probs=56.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecH
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (369)
+|.|.|++|++|..+..+.+.. ..+|++.+.. -++. +.++++..+.+.-.++... .+
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~--G~~vi~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~-~~----------------- 204 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKL--GYEVVASTGK--AEEE-DYLKELGASEVIDREDLSP-PG----------------- 204 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCeEEEEeCC--HHHH-HHHHhcCCcEEEccccHHH-HH-----------------
Confidence 8999999999999999999987 4667665432 2343 5567777655443221110 11
Q ss_pred HHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 158 ~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.++... .+|.++++..| ..+...+.+++.+-++.
T Consensus 205 ---~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~~v 238 (323)
T TIGR02823 205 ---KPLEKE-RWAGAVDTVGG-HTLANVLAQLKYGGAVA 238 (323)
T ss_pred ---HHhcCC-CceEEEECccH-HHHHHHHHHhCCCCEEE
Confidence 111111 37888887544 45666666766655443
No 388
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=79.73 E-value=26 Score=32.71 Aligned_cols=97 Identities=9% Similarity=0.126 Sum_probs=57.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..++.+.+.. ..+++..+ .+-+.+.. ++++..+.+.-.... +.+.
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~--~~~~~~~~-~~~~g~~~~~~~~~~--~~~~--------------- 199 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKY--GAATIITT--SSEEKVDF-CKKLAAIILIRYPDE--EGFA--------------- 199 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHH-HHHcCCcEEEecCCh--hHHH---------------
Confidence 57999999999999999999987 34555433 33344333 355665544322111 1011
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (369)
+.+.++.....+|.+++.. |-..+...+.++..+-++.+
T Consensus 200 -~~~~~~~~~~~~d~~i~~~-~~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 200 -PKVKKLTGEKGVNLVLDCV-GGSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred -HHHHHHhCCCCceEEEECC-chHHHHHHHHHhccCCeEEE
Confidence 1122333334589999876 54667777777766655443
No 389
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.62 E-value=20 Score=31.92 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=54.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++| +|..+..+.+..- .+|++++.. -+. .+.++++..+.+.-..... .
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g--~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~--------------- 190 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG--ARVIVTDRS--DEK-LELAKELGADHVIDYKEED---L--------------- 190 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC--CeEEEEcCC--HHH-HHHHHHhCCceeccCCcCC---H---------------
Confidence 35899999988 9999999998763 677776532 222 2334555433322111100 0
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.+. ......+|.+++.+.+...+...+.+++.+-++.
T Consensus 191 -~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 191 -EEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIV 229 (271)
T ss_pred -HHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEE
Confidence 01111 2233469999998766455666666666554433
No 390
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=79.44 E-value=17 Score=34.40 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=55.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++|++|..++.+.++. .++|++++. +-+++. .+++| .+.+. +.. .+.+
T Consensus 163 ~~~vlI~g~~g~~g~~~~~la~~~--g~~vi~~~~--~~~~~~-~~~~~-~~~~~--~~~---~~~~------------- 218 (334)
T PRK13771 163 GETVLVTGAGGGVGIHAIQVAKAL--GAKVIAVTS--SESKAK-IVSKY-ADYVI--VGS---KFSE------------- 218 (334)
T ss_pred CCEEEEECCCccHHHHHHHHHHHc--CCEEEEEeC--CHHHHH-HHHHH-HHHhc--Cch---hHHH-------------
Confidence 358999999999999999999987 567766554 334432 23444 22211 110 1111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++ ..+|++++...| ..+...+.+++.+=++.
T Consensus 219 ---~v~~~---~~~d~~ld~~g~-~~~~~~~~~l~~~G~~v 252 (334)
T PRK13771 219 ---EVKKI---GGADIVIETVGT-PTLEESLRSLNMGGKII 252 (334)
T ss_pred ---HHHhc---CCCcEEEEcCCh-HHHHHHHHHHhcCCEEE
Confidence 11122 258999998666 56788888887765533
No 391
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=79.25 E-value=18 Score=36.16 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=56.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|+|.|+ |.||..++.+.+.. ..+|+++.. +-++..+.++++..+++.-..+ .+.
T Consensus 180 ~~VlV~G~-G~vG~~avq~Ak~~--Ga~Vi~~~~--~~~~~~~~a~~lGa~~~i~~~~--~~~----------------- 235 (375)
T PLN02178 180 KRLGVNGL-GGLGHIAVKIGKAF--GLRVTVISR--SSEKEREAIDRLGADSFLVTTD--SQK----------------- 235 (375)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHc--CCeEEEEeC--ChHHhHHHHHhCCCcEEEcCcC--HHH-----------------
Confidence 57888886 99999999999987 346766543 3345556778888766542111 111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.+.. ..+|+|+++..+-..+...+.+++.|=++.
T Consensus 236 ---v~~~~--~~~D~vid~~G~~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 236 ---MKEAV--GTMDFIIDTVSAEHALLPLFSLLKVSGKLV 270 (375)
T ss_pred ---HHHhh--CCCcEEEECCCcHHHHHHHHHhhcCCCEEE
Confidence 11222 148999998544445666677776665443
No 392
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.24 E-value=23 Score=34.79 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=55.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |.||..++.+.+.. .. +|++.. .+-+++ +.++++..+.+.-..+. .+.+.
T Consensus 187 ~~VlV~G~-G~iG~~a~q~Ak~~--G~~~Vi~~~--~~~~~~-~~a~~~Ga~~~i~~~~~-~~~~~-------------- 245 (368)
T TIGR02818 187 DTVAVFGL-GGIGLSVIQGARMA--KASRIIAID--INPAKF-ELAKKLGATDCVNPNDY-DKPIQ-------------- 245 (368)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEc--CCHHHH-HHHHHhCCCeEEccccc-chhHH--------------
Confidence 58999996 99999999999876 34 466543 344443 45677877654422110 00111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (369)
+.+.++... .+|+|+++..+...+.-.+..++.
T Consensus 246 --~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~ 278 (368)
T TIGR02818 246 --EVIVEITDG-GVDYSFECIGNVNVMRAALECCHK 278 (368)
T ss_pred --HHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhc
Confidence 122333333 589999996655667777777755
No 393
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.17 E-value=18 Score=34.06 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=25.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ 120 (369)
|.+.|.|+ |.||..+.+-+. ..++|+.+. +|.+.+.+.
T Consensus 3 k~~lItGa-~gIG~~la~~l~---~G~~Vv~~~--r~~~~~~~~ 40 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG---AGKKVLLAD--YNEENLEAA 40 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh---CCCEEEEEe--CCHHHHHHH
Confidence 34566666 789999988874 368888764 345544433
No 394
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.13 E-value=21 Score=34.30 Aligned_cols=96 Identities=11% Similarity=0.198 Sum_probs=56.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
.++|.|.| +|+||..++.+.+.. ..+ |++.. ++-+++ +.++++..+.+.-..+...
T Consensus 167 g~~vlI~g-~g~iG~~~~~lak~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~~v~~~~~~~----------------- 223 (351)
T cd08285 167 GDTVAVFG-IGPVGLMAVAGARLR--GAGRIIAVG--SRPNRV-ELAKEYGATDIVDYKNGDV----------------- 223 (351)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHcCCceEecCCCCCH-----------------
Confidence 36899997 699999999999876 343 44433 233343 5566776654432211111
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.+.++.....+|++++++.|-..+...+.+++.+=++.
T Consensus 224 --~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 224 --VEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTIS 263 (351)
T ss_pred --HHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 1122233333358999998776666777777776654433
No 395
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.02 E-value=15 Score=34.22 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=40.1
Q ss_pred CeeEEEEec--CChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGS--TGSIGtqTLdVI~~~pd~F~VvaLaa-g~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
.|.+.|.|+ ++-||..+..-+.+. .++|+...- .++.+++.+..+++........|-.+.+.+++.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQ--GAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQV 74 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHH
Confidence 368999996 567999998888775 567665321 233455555555544334444555555555544
No 396
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=78.98 E-value=30 Score=35.05 Aligned_cols=135 Identities=14% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhH--HHHHHHHhcCCCCc-
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL--DEIKEALANVEEKP- 151 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~--~~l~~~l~~~~~~~- 151 (369)
..++|+|+|++|.+|.+.-..+++. .++|.+... +..+.+.+.++ ..++|.++-+... +.+++ +.....+.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~-~~~~~~~~~~~--~aDlVilavP~~~~~~~~~~-l~~l~~~~i 170 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQ-DDWDRAEDILA--DAGMVIVSVPIHLTEEVIAR-LPPLPEDCI 170 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCC-CcchhHHHHHh--cCCEEEEeCcHHHHHHHHHH-HhCCCCCcE
Confidence 3478999999999999999999886 466666543 22233333333 4577777554332 22333 22221111
Q ss_pred eEEecH--HH-HHHHhcCCCCCEE-EEeccCccCcHHHHHHHHcCCceeeecccceeecc------cchhHHhhhcCCeE
Q 017567 152 EILAGE--QG-VIEAARHPDAVTV-VTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG------PFVLPLAHKHNIKI 221 (369)
Q Consensus 152 ~v~~G~--~g-l~~~~~~~~~D~V-v~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG------~li~~~a~k~~~~I 221 (369)
-+=.|. .. +.++.+.....+| .-=+.|. .. =.++++-.+++.| ..+.++.+..|.++
T Consensus 171 v~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~-----~~--------~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v 237 (374)
T PRK11199 171 LVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGP-----DV--------GSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARL 237 (374)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEeeCCCCCC-----CC--------cccCCCEEEEcCCCCchHHHHHHHHHHHCCCEE
Confidence 111121 22 3334433222222 1112221 00 1245555555555 25678888899999
Q ss_pred eecccch
Q 017567 222 LPADSEH 228 (369)
Q Consensus 222 lPVDSEH 228 (369)
+.+|.|.
T Consensus 238 ~~~~~~~ 244 (374)
T PRK11199 238 HRISAVE 244 (374)
T ss_pred EECCHHH
Confidence 9999865
No 397
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=78.82 E-value=3.9 Score=38.22 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.1
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|.|.|+||+||....+-+.+... .+|+++.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~ 30 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVD 30 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEe
Confidence 57999999999999999988642 2576664
No 398
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=78.74 E-value=15 Score=37.35 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=70.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHH------hhCCCEEEEcCchhHHHHHHHHhcCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVE 148 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa-g~Nv~lL~eQ~~------~FkP~~V~v~de~~~~~l~~~l~~~~ 148 (369)
+.||+|.|. |-||+..+..+.++| +++|+|+.- ..+.+.|+-+.+ +|...-|.+.+... +.-.+
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~-~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~-------l~~~g 75 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRD-DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKT-------LLFGE 75 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCC-CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCE-------EEECC
Confidence 458999995 999999999988875 589999875 567888877665 23221233211110 11011
Q ss_pred CCceEEecHHHHHHH-hcCCCCCEEEEeccCccCcHHHHHHHHcC-Cceeeec
Q 017567 149 EKPEILAGEQGVIEA-ARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 199 (369)
Q Consensus 149 ~~~~v~~G~~gl~~~-~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaLAN 199 (369)
..+.++.-. ...++ -...++|+|+.+--.+.--+-.-.++++| |+|-+.+
T Consensus 76 ~~i~v~~~~-~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSa 127 (338)
T PLN02358 76 KPVTVFGIR-NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISA 127 (338)
T ss_pred EEEEEEEcC-CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCC
Confidence 223333211 11121 11247999999877777767677788999 6666653
No 399
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=78.72 E-value=5.2 Score=33.96 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=22.4
Q ss_pred eeEEEEecC---ChHhHHHHHHHHhCCCceEEEEE
Q 017567 77 KPISVLGST---GSIGTQTLDIVAEHEDKFRVVAL 108 (369)
Q Consensus 77 kkI~ILGST---GSIGtqTLdVI~~~pd~F~VvaL 108 (369)
|+|+|+|++ ++.|...++-++++ .|+|+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~V 33 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPV 33 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEE
Confidence 689999987 88999999999884 5788876
No 400
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=78.62 E-value=21 Score=37.33 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCCCeeEEEEecCChHhHHH--HHHHHhCCCceEEEEEeecC-------------CHHHHHHHHHhhCCCEE-EEcCchh
Q 017567 73 WDGPKPISVLGSTGSIGTQT--LDIVAEHEDKFRVVALAAGS-------------NITLLADQVKRFKPQVV-AVRNESL 136 (369)
Q Consensus 73 ~~~~kkI~ILGSTGSIGtqT--LdVI~~~pd~F~VvaLaag~-------------Nv~lL~eQ~~~FkP~~V-~v~de~~ 136 (369)
-.++|++.|.|+++.||..+ -.-++ ....|+++...+ |.+.+.+.+++...+.. .-.|-.+
T Consensus 38 ~~ggK~aLVTGaSsGIGlA~~IA~al~---~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss 114 (398)
T PRK13656 38 ANGPKKVLVIGASSGYGLASRIAAAFG---AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFS 114 (398)
T ss_pred CCCCCEEEEECCCchHhHHHHHHHHHH---cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCC
Confidence 37789999999999999982 22222 367788776432 44556667776654433 2345444
Q ss_pred HHHHHHHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCc------------cCcHHHHHHHHcCCcee
Q 017567 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGC------------AGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 137 ~~~l~~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~------------aGL~pt~~Ai~~gK~ia 196 (369)
.+.+++.+. .+.+ ....+|++|+.+.-. +-|+|+...+. |+.+-
T Consensus 115 ~E~v~~lie-------------~I~e--~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~-~~~~d 170 (398)
T PRK13656 115 DEIKQKVIE-------------LIKQ--DLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYT-GKTLD 170 (398)
T ss_pred HHHHHHHHH-------------HHHH--hcCCCCEEEECCccCCCCCcccCceeeccccccccccc-CCccc
Confidence 444443321 1111 124689999886543 25777777754 44333
No 401
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.58 E-value=14 Score=30.25 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=51.1
Q ss_pred hHhHHHHH-HHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC--chhHHH---HHHHHhcCCCCceEEecHH--
Q 017567 87 SIGTQTLD-IVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDE---IKEALANVEEKPEILAGEQ-- 158 (369)
Q Consensus 87 SIGtqTLd-VI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d--e~~~~~---l~~~l~~~~~~~~v~~G~~-- 158 (369)
.+|-..+. +++++ .|+|.-+-+..+.+.+.+++++++|+.|+++- ...+.. +-+..+....++.++.|--
T Consensus 14 ~lGl~~la~~l~~~--G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 14 PLGLLYLAAYLRKA--GHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp SHHHHHHHHHHHHT--TBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred hHHHHHHHHHHHHC--CCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 34555544 34443 78888887777779999999999999999854 222222 2233333334555555532
Q ss_pred --HHHHHhcC-CCCCEEEEe
Q 017567 159 --GVIEAARH-PDAVTVVTG 175 (369)
Q Consensus 159 --gl~~~~~~-~~~D~Vv~A 175 (369)
.-.++.+. +.+|.|+.+
T Consensus 92 t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 92 TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp GHHHHHHHHHHHTSEEEEEE
T ss_pred hcChHHHhccCcCcceecCC
Confidence 12333333 567888765
No 402
>PRK08264 short chain dehydrogenase; Validated
Probab=78.42 E-value=9.9 Score=34.07 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=29.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLAD 119 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~e 119 (369)
.++|.|.|+||.||.....-+.+. .. +|+.++ ++.+.+.+
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~--G~~~V~~~~--r~~~~~~~ 46 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR--GAAKVYAAA--RDPESVTD 46 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CcccEEEEe--cChhhhhh
Confidence 368999999999999999988876 34 454443 45555543
No 403
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.19 E-value=13 Score=31.90 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=33.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
.+++.|+|+ |=+|+.++.-+.+. .++=+.+ +++|.+++.+.+++|.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~--g~~~i~i-~nRt~~ra~~l~~~~~ 57 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL--GAKEITI-VNRTPERAEALAEEFG 57 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT--TSSEEEE-EESSHHHHHHHHHHHT
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc--CCCEEEE-EECCHHHHHHHHHHcC
Confidence 368999998 55888888888876 3332222 3589999999999883
No 404
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=78.19 E-value=19 Score=36.75 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=47.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeec--------------CCHHHHHHHHHhhCCCEEEEcCch
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNES 135 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaag--------------~Nv~lL~eQ~~~FkP~~V~v~de~ 135 (369)
.+++.|+|+ |.-|.+..+-++++|+ .|+++|+.-. .+.+.|.+.+++.+.+.|.++.+.
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~ 201 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPL 201 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCc
Confidence 468999995 5678888888888765 6999998642 246889999999999999987654
No 405
>PLN02740 Alcohol dehydrogenase-like
Probab=77.86 E-value=19 Score=35.63 Aligned_cols=91 Identities=9% Similarity=0.113 Sum_probs=55.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|+|+ |+||..++.+.+.. .. +|+++.. +-+++ +.++++..+.+.-..+.. +.+.
T Consensus 200 ~~VlV~G~-G~vG~~a~q~ak~~--G~~~Vi~~~~--~~~r~-~~a~~~Ga~~~i~~~~~~-~~~~-------------- 258 (381)
T PLN02740 200 SSVAIFGL-GAVGLAVAEGARAR--GASKIIGVDI--NPEKF-EKGKEMGITDFINPKDSD-KPVH-------------- 258 (381)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCcEEEEcC--ChHHH-HHHHHcCCcEEEeccccc-chHH--------------
Confidence 58999996 99999999999876 34 4666543 33443 455777765543211100 0111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (369)
+.+.++... .+|+|+++..+...+.-.+.+++.
T Consensus 259 --~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~ 291 (381)
T PLN02740 259 --ERIREMTGG-GVDYSFECAGNVEVLREAFLSTHD 291 (381)
T ss_pred --HHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhc
Confidence 122233333 589999987766677777777655
No 406
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=77.66 E-value=28 Score=31.02 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=31.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
.+|.|+|++|++|..+..+.+.. ..+|++.+- +-+.+ +++++|..
T Consensus 106 ~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~ 150 (288)
T smart00829 106 ESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAG--SPEKR-DFLRELGI 150 (288)
T ss_pred CEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHcCC
Confidence 47999999999999999998876 456666542 33333 33456654
No 407
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=77.55 E-value=33 Score=32.34 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=58.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|++|..++.+.+.. ..++|++.+.. -++ .++++++..+.+.-.++. +.+
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~-~G~~vi~~~~~--~~~-~~~l~~~g~~~~~~~~~~----~~~-------------- 207 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQL-TGLTVIATASR--PES-QEWVLELGAHHVIDHSKP----LKA-------------- 207 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHh-CCCEEEEEcCc--HHH-HHHHHHcCCCEEEECCCC----HHH--------------
Confidence 58999999999999999998863 14677776433 233 344567777665432221 111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.++ ....+|+|++.+.+-..+...+..++.+=++.
T Consensus 208 --~i~~~-~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v 244 (336)
T TIGR02817 208 --QLEKL-GLEAVSYVFSLTHTDQHFKEIVELLAPQGRFA 244 (336)
T ss_pred --HHHHh-cCCCCCEEEEcCCcHHHHHHHHHHhccCCEEE
Confidence 12222 12257888876655455666777776655554
No 408
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=77.44 E-value=12 Score=36.82 Aligned_cols=56 Identities=38% Similarity=0.528 Sum_probs=33.0
Q ss_pred CeeEEEEecCChHhHHHH-H-HHHhCCC---ceEE----------------EEEee--cC-CHHHHHHHHHhhCCCEEEE
Q 017567 76 PKPISVLGSTGSIGTQTL-D-IVAEHED---KFRV----------------VALAA--GS-NITLLADQVKRFKPQVVAV 131 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTL-d-VI~~~pd---~F~V----------------vaLaa--g~-Nv~lL~eQ~~~FkP~~V~v 131 (369)
.+.|.|.|.||| |+.|+ . +++..|+ ..++ +.+-. +. +.+.+.+.+.+.+|+++.+
T Consensus 132 ~~~ilI~G~tGS-GKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 132 RKNILVVGGTGS-GKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CCeEEEECCCCC-CHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 469999999999 65554 3 3333221 1222 22321 12 5667777777778888776
Q ss_pred c
Q 017567 132 R 132 (369)
Q Consensus 132 ~ 132 (369)
.
T Consensus 211 G 211 (299)
T TIGR02782 211 G 211 (299)
T ss_pred e
Confidence 4
No 409
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=77.38 E-value=4.6 Score=36.47 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
|++.|.|+||.||....+-+.+. .++|+++.-
T Consensus 9 k~vlItGas~~iG~~la~~l~~~--G~~v~~~~~ 40 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEA--GAKVIGFDQ 40 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEec
Confidence 68999999999999999988765 578877754
No 410
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=77.26 E-value=15 Score=37.27 Aligned_cols=108 Identities=13% Similarity=0.209 Sum_probs=69.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHH------hhCCCEEEEcCchhHHHHHHHHhcCCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa-g~Nv~lL~eQ~~------~FkP~~V~v~de~~~~~l~~~l~~~~~ 149 (369)
.||+|-|. |=||+..++.+.++ ++|+|++.-. ....+.++-+.+ +|+.. |...+.. +.-.+.
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~-~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~-v~~~g~~--------l~~~g~ 71 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDW-PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHE-VTAEGDA--------IVINGK 71 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhC-CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCC-EEEcCCE--------EEECCE
Confidence 58999999 99999999998876 4699998765 446777777665 33322 2221111 111122
Q ss_pred CceEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC-Cceee
Q 017567 150 KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (369)
Q Consensus 150 ~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaL 197 (369)
.++++.- ..+.++-=. ++|+|+.+--++.--.-.-.++++| |+|-+
T Consensus 72 ~i~v~~~-~~~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 72 RIRTTQN-KAIADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred EEEEEec-CChhhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 3444322 234443222 7999999987777777777889999 55544
No 411
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=77.20 E-value=26 Score=31.97 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V 129 (369)
.++|.|.|++|++|..++.+.+.. ..+|+.++- +-+.+ +.++++..+.+
T Consensus 145 g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~~ 193 (325)
T cd08253 145 GETVLVHGGSGAVGHAAVQLARWA--GARVIATAS--SAEGA-ELVRQAGADAV 193 (325)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 468999999999999999999886 467766543 22332 33345555444
No 412
>PRK07578 short chain dehydrogenase; Provisional
Probab=77.10 E-value=9.5 Score=33.59 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=24.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
++.|.|+||.||....+.+.+. ++|++++
T Consensus 2 ~vlItGas~giG~~la~~l~~~---~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR---HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc---CcEEEEe
Confidence 6999999999999999988875 6676654
No 413
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=77.05 E-value=32 Score=32.85 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=56.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.++|.|+| .|++|..++.+.+.. .++|++++.. -++. +.++++..+.+.-..+ ...+.+
T Consensus 166 ~~~vlV~g-~g~vg~~~~~~a~~~--G~~vi~~~~~--~~~~-~~~~~~g~~~~i~~~~--~~~~~~------------- 224 (345)
T cd08260 166 GEWVAVHG-CGGVGLSAVMIASAL--GARVIAVDID--DDKL-ELARELGAVATVNASE--VEDVAA------------- 224 (345)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEeCC--HHHH-HHHHHhCCCEEEcccc--chhHHH-------------
Confidence 35899999 799999999999976 5777776543 3332 3345666544432221 001111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
.+..+... .+|.+++.+.+-..+...+..++.+-++
T Consensus 225 ---~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~ 260 (345)
T cd08260 225 ---AVRDLTGG-GAHVSVDALGIPETCRNSVASLRKRGRH 260 (345)
T ss_pred ---HHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence 12223333 5899998866555666677777665443
No 414
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=76.71 E-value=20 Score=31.98 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=80.7
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh--CCCEEE-EcCchhHHHHHHHHhcCCCCceE---E-----e
Q 017567 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVA-VRNESLLDEIKEALANVEEKPEI---L-----A 155 (369)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F--kP~~V~-v~de~~~~~l~~~l~~~~~~~~v---~-----~ 155 (369)
.||..|-+.++++ .|.+.-.....+.+.|++.+++. ..+.+. ...+.....|.+.|...+..+.. + .
T Consensus 83 avG~~Ta~~l~~~--g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~ 160 (239)
T cd06578 83 AVGPKTAEALREA--GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPD 160 (239)
T ss_pred EECHHHHHHHHHc--CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCC
Confidence 6799999999986 66666666777888888888885 444444 44454556777777643322111 1 1
Q ss_pred cHHHHHHHhcCCCCCEEE-EeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCe--EeecccchhhHH
Q 017567 156 GEQGVIEAARHPDAVTVV-TGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIK--ILPADSEHSAIF 232 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv-~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~--IlPVDSEHsAIf 232 (369)
..+...++......|.|+ ..-.+ +.-.+..+..-....+ .+-.++|-|+-..+.++++|.+ ++|=.....++.
T Consensus 161 ~~~~~~~~l~~~~~~~iiftS~~~---v~~f~~~~~~~~~~~~-~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~~~l~ 236 (239)
T cd06578 161 LDAELLELLEEGAIDAVLFTSPST---VRNLLELLGKEGRALL-KNVKIAAIGPRTAEALRELGLKVVIVAESPTLEALL 236 (239)
T ss_pred CcHHHHHHHHcCCCcEEEEeCHHH---HHHHHHHHhhhhhhhh-cCCeEEEECHHHHHHHHHcCCCceeeecCCChHHHH
Confidence 112344555555565444 33344 3443444432111222 2346788899999999988864 333333245555
Q ss_pred H
Q 017567 233 Q 233 (369)
Q Consensus 233 Q 233 (369)
+
T Consensus 237 ~ 237 (239)
T cd06578 237 E 237 (239)
T ss_pred h
Confidence 4
No 415
>PRK06545 prephenate dehydrogenase; Validated
Probab=76.31 E-value=61 Score=32.45 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=27.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~ 118 (369)
++|+|+| +|.||.+...-+++. .++|.......+-..+.
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~ 39 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLA 39 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHH
Confidence 4799997 599999999999876 34555555555544443
No 416
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=76.12 E-value=17 Score=32.17 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=44.0
Q ss_pred EEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC
Q 017567 81 VLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (369)
Q Consensus 81 ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d 133 (369)
|+|..| .||.+.+..+-+. ..|+|+=|-...-.+++.+.+++.+|+.++++.
T Consensus 3 vigtv~gD~HdiGkniv~~~L~~-~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 3 VLGVIGSDCHAVGNKILDHAFTE-AGFNVVNLGVLSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred EEEEeCCchhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 444444 5899988888774 689999999999999999999999999999865
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=75.99 E-value=29 Score=37.16 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=39.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEc
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVR 132 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~ 132 (369)
+.+|+|+|+ |-||.+++...+..-- +|+++ ..+-+.+ +|++++..+++.+.
T Consensus 165 g~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~--D~~~~rl-e~aeslGA~~v~i~ 215 (509)
T PRK09424 165 PAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAF--DTRPEVA-EQVESMGAEFLELD 215 (509)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--EEEEE--eCCHHHH-HHHHHcCCeEEEec
Confidence 568999997 8999999999998754 56654 3555554 68999999887664
No 418
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.96 E-value=30 Score=32.20 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=36.3
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 76 ~kkI~ILGSTG--SIGtqTLdVI~~~pd~F~VvaLaag~Nv---~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
.|.+.|.|+|+ -||..+-.-+.+. .++|+. .+ +|- +.+.+...++...++.-.|-.+.+.+++.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~-~~-r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~ 76 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH--GAELWF-TY-QSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNL 76 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc--CCEEEE-Ee-CchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence 36799999996 5999988777764 566654 33 342 23333333433333333454444444443
No 419
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=75.92 E-value=6.4 Score=38.23 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=28.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI 114 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv 114 (369)
++|.|+|+||- |.+..+-+.+. .++|++.++...-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~--g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQ--GIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhC--CCeEEEEEccCCc
Confidence 37999999998 99999988865 5889888876543
No 420
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.83 E-value=32 Score=32.62 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=39.3
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaag~Nv---~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
|.+.|.|++ +-||..+-..+.+. .++|+. ++ +|- +.+.+..+++..+.....|-.+.+.+++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~--G~~Vil-~~-r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 73 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQ--GAELAF-TY-LNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSL 73 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHC--CCEEEE-Ee-cCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHH
Confidence 689999997 57999999988875 567664 33 442 44555555554333333454444444443
No 421
>PLN02256 arogenate dehydrogenase
Probab=75.74 E-value=34 Score=33.83 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
..++|+|+| .|.||.+...-+++. .++|++..-
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~--G~~V~~~d~ 67 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQ--GHTVLATSR 67 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhC--CCEEEEEEC
Confidence 445799999 799999999988876 367876553
No 422
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=75.69 E-value=38 Score=31.73 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=55.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|.+|..++.+.++. .++|++++. +-+.+ +.++++..+.+.-..+....
T Consensus 167 ~~vli~g-~g~vG~~~~~la~~~--G~~V~~~~~--s~~~~-~~~~~~g~~~~~~~~~~~~~------------------ 222 (338)
T cd08254 167 ETVLVIG-LGGLGLNAVQIAKAM--GAAVIAVDI--KEEKL-ELAKELGADEVLNSLDDSPK------------------ 222 (338)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCEEEEEcC--CHHHH-HHHHHhCCCEEEcCCCcCHH------------------
Confidence 4788865 689999999999987 466766643 33333 34466666554433221111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.+ +......+|+|++.+-+-..+...+.+++.+=++
T Consensus 223 -~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~ 259 (338)
T cd08254 223 -DKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRI 259 (338)
T ss_pred -HHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 112 2222335899998865555667777777766443
No 423
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=75.51 E-value=23 Score=37.24 Aligned_cols=116 Identities=10% Similarity=0.069 Sum_probs=64.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.|++.|+|+ |.+|+.....+.+. .++|+. +++|.+++.+.+.+++...+. +
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~--G~~V~i--~~R~~~~~~~la~~~~~~~~~------~------------------ 382 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARA--GAELLI--FNRTKAHAEALASRCQGKAFP------L------------------ 382 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC--CCEEEE--EeCCHHHHHHHHHHhccceec------h------------------
Confidence 368999995 89999999988876 356543 356777776666655422110 0
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc-CCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHh
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA-GKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC 234 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~-gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~ 234 (369)
.++....++|+||++...-.-+.. .+.. =-++.-..+|| -+++.|++.|.+++ |--.=-++|.
T Consensus 383 -----~~~~~l~~~DiVInatP~g~~~~~---~l~~~v~D~~Y~P~~T------~ll~~A~~~G~~~~--~G~~Ml~~Qa 446 (477)
T PRK09310 383 -----ESLPELHRIDIIINCLPPSVTIPK---AFPPCVVDINTLPKHS------PYTQYARSQGSSII--YGYEMFAEQA 446 (477)
T ss_pred -----hHhcccCCCCEEEEcCCCCCcchh---HHhhhEEeccCCCCCC------HHHHHHHHCcCEEE--CcHHHHHHHH
Confidence 011112468999999875443321 1210 00111111222 25678888887653 6555555554
Q ss_pred hc
Q 017567 235 IQ 236 (369)
Q Consensus 235 L~ 236 (369)
..
T Consensus 447 ~~ 448 (477)
T PRK09310 447 LL 448 (477)
T ss_pred HH
Confidence 43
No 424
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=75.27 E-value=39 Score=31.60 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=37.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~ 130 (369)
..+|.|.|++|++|..+..+.+.. .++|++.+... ++. +.++++..+.+.
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~~ 196 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARL--GYEVVASTGRP--EEA-DYLRSLGASEII 196 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEeCCH--HHH-HHHHhcCCCEEE
Confidence 358999999999999999999887 57788876433 443 344677766554
No 425
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=75.12 E-value=5.9 Score=40.88 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=42.0
Q ss_pred ccCCCCCCeeEEEEecCChHhHHHHHHHHhCCCceE-----EEEEe-ecCCHHHHHHHHHhhC
Q 017567 69 FRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFR-----VVALA-AGSNITLLADQVKRFK 125 (369)
Q Consensus 69 ~~~~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~-----VvaLa-ag~Nv~lL~eQ~~~Fk 125 (369)
-.++|..|-||+|.|+||.||.+..--+.. .+-|. +..|. ...|.+++..++.++.
T Consensus 37 ~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~-~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~ 98 (387)
T TIGR01757 37 LTKSWKKTVNVAVSGAAGMISNHLLFMLAS-GEVFGQDQPIALKLLGSERSKEALEGVAMELE 98 (387)
T ss_pred HHhcCCCCeEEEEECCCcHHHHHHHHHHHh-ccccCCCCceEEEEeccCccchhhhHHHHHHH
Confidence 468999999999999999999998886654 33444 33344 5678888887777653
No 426
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.12 E-value=18 Score=37.02 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=75.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh--CCCEEEEc-CchhHHHHHHHHhcCCCCceE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVAVR-NESLLDEIKEALANVEEKPEI 153 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F--kP~~V~v~-de~~~~~l~~~l~~~~~~~~v 153 (369)
.||+|=| -|-||+..++.+.+.+++++|||+.--...+.++.+.+.= +..|..-- .++. .+.-.+..+++
T Consensus 2 ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~------~~~v~g~~I~v 74 (335)
T COG0057 2 IKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDD------ALVVNGKGIKV 74 (335)
T ss_pred cEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCC------eEEECCceEEE
Confidence 3677776 7999999999999987789999998877788888888754 23333211 0000 01111234566
Q ss_pred EecHH-HHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC--Cceee
Q 017567 154 LAGEQ-GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG--KDIAL 197 (369)
Q Consensus 154 ~~G~~-gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g--K~iaL 197 (369)
+.-.+ ....-.+. .+|+||.+--.+.|-+-.-.-+++| |+|.+
T Consensus 75 ~~~~~p~~l~w~d~-gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~i 120 (335)
T COG0057 75 LAERDPANLPWADL-GVDIVVECTGKFTGREKAEKHLKAGGAKKVLI 120 (335)
T ss_pred EecCChHHCCcccc-CccEEEECCCCccchhhHHHHHHhcCCCEEEE
Confidence 55444 44444433 4889999988888887777678886 66655
No 427
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.09 E-value=28 Score=32.76 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=37.7
Q ss_pred eeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEEcCchhHHHHHHH
Q 017567 77 KPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (369)
Q Consensus 77 kkI~ILGSTG--SIGtqTLdVI~~~pd~F~VvaLaag~Nv---~lL~eQ~~~FkP~~V~v~de~~~~~l~~~ 143 (369)
|.+.|.|+|+ -||..+-.-+.+. .++|+.. + +|- +.+.+..++.........|-.+.+.+++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~-~-r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~ 75 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFT-Y-QGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAV 75 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEe-c-CchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHH
Confidence 6899999997 7999999988875 5677653 3 332 23334334433233333454444444443
No 428
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=74.67 E-value=23 Score=34.25 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=59.5
Q ss_pred EEEEEeec-CCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHHHHHHHhcCCCCCEEEEeccCccCc
Q 017567 104 RVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGL 182 (369)
Q Consensus 104 ~VvaLaag-~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL 182 (369)
-|+.+++| .|+|.+......+.++..++..+..-..+.+.+. +.-+.....++ ..-.|+
T Consensus 114 gvI~~t~H~GnwE~~~~~l~~~~~~~~~v~~~~~n~~~~~~~~----------------~~R~~~g~~~i----~~~~~~ 173 (298)
T PRK08419 114 PIIVTTAHYGYWELFSLALAAYYGAVSIVGRLLKSAPINEMIS----------------KRREQFGIELI----DKKGAM 173 (298)
T ss_pred CEEEEeeCccHHHHHHHHHHhcCCCeEEEEeCCCChHHHHHHH----------------HHHHHcCCeeE----ECccHH
Confidence 37777776 5999987655555555555543322222222211 11111122222 233468
Q ss_pred HHHHHHHHcCCceeeec------ccceee--------cccchhHHhhhcCCeEeeccc
Q 017567 183 KPTVAAIEAGKDIALAN------KETLIA--------GGPFVLPLAHKHNIKILPADS 226 (369)
Q Consensus 183 ~pt~~Ai~~gK~iaLAN------KEsLV~--------aG~li~~~a~k~~~~IlPVDS 226 (369)
...+++++.|..|++.. ++.+.+ -=...-.+|+++|+.|+||-.
T Consensus 174 r~~l~~Lk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~~~~g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 174 KELLKALKQGRALGILVDQNVVPKEGVEVKFFNKRVTHTTIASILARRYNALIIPVFI 231 (298)
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCCCeEEecCCCCcccchhHHHHHHHHCCCEEEEEE
Confidence 88889999999988874 444432 112234588999999999965
No 429
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=74.42 E-value=53 Score=30.81 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCC-ceEE-ecH-HHHHHHhcC
Q 017567 90 TQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK-PEIL-AGE-QGVIEAARH 166 (369)
Q Consensus 90 tqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~-~~v~-~G~-~gl~~~~~~ 166 (369)
.++-++.+..|...+.||+..+.+.+.+.+.++++++++|=+......+.++..-...+.+ ++++ ..+ +.+.++.+.
T Consensus 42 ~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~ 121 (210)
T PRK01222 42 EQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAY 121 (210)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhh
Confidence 3444566666667889999999999999999999999999997554444333221111111 1222 222 234443221
Q ss_pred -CCCCEEE-Eecc---CccCcHHHHHHHHcCCceeeecccceeeccc
Q 017567 167 -PDAVTVV-TGIV---GCAGLKPTVAAIEAGKDIALANKETLIAGGP 208 (369)
Q Consensus 167 -~~~D~Vv-~AIv---G~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~ 208 (369)
..+|.++ ++-+ |-.|..--+..+.. .+ .+..+++||=
T Consensus 122 ~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~--~~---~~p~~LAGGi 163 (210)
T PRK01222 122 YGDADGLLLDAYVGLPGGTGKTFDWSLLPA--GL---AKPWILAGGL 163 (210)
T ss_pred hccCCEEEEcCCCCCCCCCCCccchHHhhh--cc---CCCEEEECCC
Confidence 2367554 4433 77788877777732 22 6678888883
No 430
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=74.39 E-value=7.7 Score=40.59 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=32.4
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 017567 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (369)
Q Consensus 71 ~~~~~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (369)
.+-..+..|.+.|+||=+|+...+++++. .|.|.+++-
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkr--gf~vra~VR 111 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKR--GFSVRALVR 111 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHC--CCeeeeecc
Confidence 34455679999999999999999999987 499999873
No 431
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=74.32 E-value=24 Score=36.10 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=44.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeecC---------------CHHHHHHHHHhhCCCEEEEcCc
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAGS---------------NITLLADQVKRFKPQVVAVRNE 134 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaag~---------------Nv~lL~eQ~~~FkP~~V~v~de 134 (369)
..+++.|+|+ |.-|.+.++.++++|+ .|+++|..--. + +.+.+.+++.+.+.|.++.+
T Consensus 124 ~~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip 197 (456)
T TIGR03022 124 WGRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMP 197 (456)
T ss_pred CCceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecC
Confidence 3478999997 4678899999988765 69999976321 2 66778888899987777654
No 432
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=74.24 E-value=54 Score=30.44 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=87.3
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-C--CEEEEcCchhHHHHHHHHhcCCCCc---eEE------
Q 017567 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P--QVVAVRNESLLDEIKEALANVEEKP---EIL------ 154 (369)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk-P--~~V~v~de~~~~~l~~~l~~~~~~~---~v~------ 154 (369)
.||..|-+.++++ .|..+ .....+.+.|++...... + +.+.+..+...+.|.+.|...+..+ .++
T Consensus 80 aVG~~Ta~~l~~~--G~~~~-~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 80 AVGEATAEAAREL--GFRHV-IEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred EEcHHHHHHHHHc--CCCCC-cCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 4799999999987 45533 344567888877766542 2 4666666666677777776544322 222
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCC-e-EeecccchhhHH
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-K-ILPADSEHSAIF 232 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~-~-IlPVDSEHsAIf 232 (369)
.-.+.+.++....++|.|+..-.- ++.-.++.+...+.-..-++-.+||=|+-+.+.+++.+. + +++=.....+++
T Consensus 157 ~~~~~~~~~l~~~~~d~i~f~S~~--~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t~~~l~ 234 (240)
T PRK09189 157 YSPATLSAILGGAPFDAVLLYSRV--AARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPDEKSLL 234 (240)
T ss_pred CChHHHHHHHhcCCCCEEEEeCHH--HHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCCHHHHH
Confidence 112345566666678988766433 344444444322211122456789999999888887642 3 345445566777
Q ss_pred Hhhc
Q 017567 233 QCIQ 236 (369)
Q Consensus 233 Q~L~ 236 (369)
++|.
T Consensus 235 ~~l~ 238 (240)
T PRK09189 235 SLLS 238 (240)
T ss_pred HHhh
Confidence 7765
No 433
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=73.84 E-value=46 Score=30.53 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=56.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..++.|.|++|.+|..++.+.+.. ..+|.+.+ +. +.+ +.++++..+.+.-.... +.
T Consensus 145 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~--~~-~~~-~~~~~~g~~~~~~~~~~----~~-------------- 200 (326)
T cd08272 145 GQTVLIHGGAGGVGHVAVQLAKAA--GARVYATA--SS-EKA-AFARSLGADPIIYYRET----VV-------------- 200 (326)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEe--ch-HHH-HHHHHcCCCEEEecchh----HH--------------
Confidence 358999999999999999999877 45666554 23 443 33466665443321111 11
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
+.+.++.....+|.+++.+.| ..+...+.++..+-+
T Consensus 201 --~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~g~ 236 (326)
T cd08272 201 --EYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALYGR 236 (326)
T ss_pred --HHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccCCE
Confidence 122333333358999998776 456666666655443
No 434
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=73.71 E-value=35 Score=33.84 Aligned_cols=132 Identities=12% Similarity=0.142 Sum_probs=80.4
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC---CceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC----chh-HHHHHHHHh
Q 017567 74 DGPKPISVLGSTGSIGTQTLDIVAEHE---DKFRVVALAAGSNITLLADQVKRFKPQVVAVRN----ESL-LDEIKEALA 145 (369)
Q Consensus 74 ~~~kkI~ILGSTGSIGtqTLdVI~~~p---d~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d----e~~-~~~l~~~l~ 145 (369)
+.++||+||.|.+ |++.-+++.+.. -+.+|+++..++ +.+.+.++++.-.+..+.- .+. -.++.+.|.
T Consensus 91 ~~~~kiavl~Sg~--g~nl~al~~~~~~~~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~ 166 (289)
T PRK13010 91 GQRPKVVIMVSKF--DHCLNDLLYRWRMGELDMDIVGIISNH--PDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIE 166 (289)
T ss_pred CCCeEEEEEEeCC--CccHHHHHHHHHCCCCCcEEEEEEECC--hhHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHH
Confidence 4567999999987 888888887642 257888887654 2335888998877776531 111 112333344
Q ss_pred cCCCCceEEecHHHHH--HHhcCCCCCEEEE----eccCccCcHHHHHHHHcCCc-----eeeecccceeecccchhH
Q 017567 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (369)
Q Consensus 146 ~~~~~~~v~~G~~gl~--~~~~~~~~D~Vv~----AIvG~aGL~pt~~Ai~~gK~-----iaLANKEsLV~aG~li~~ 212 (369)
..+.+.-|++|---+. ++.+.. ..-++| -+..+-|..|...|+++|.+ +=..+.| +-.|++|.+
T Consensus 167 ~~~~Dlivlagym~il~~~~l~~~-~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~--lD~GpII~Q 241 (289)
T PRK13010 167 TSGAELVVLARYMQVLSDDLSRKL-SGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDD--LDEGPIIEQ 241 (289)
T ss_pred HhCCCEEEEehhhhhCCHHHHhhc-cCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCC--CCCCCceEE
Confidence 4344555666653332 123322 223443 35678899999999999754 4445544 456777744
No 435
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.56 E-value=38 Score=32.91 Aligned_cols=97 Identities=12% Similarity=0.219 Sum_probs=57.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.| +|.+|..++.+.+... ++ |++++. +-++. +.++++..+.+.-.++.. +
T Consensus 189 ~~VlI~g-~g~vG~~~~~lak~~G--~~~vi~~~~--s~~~~-~~~~~~g~~~v~~~~~~~---~--------------- 244 (367)
T cd08263 189 ETVAVIG-VGGVGSSAIQLAKAFG--ASPIIAVDV--RDEKL-AKAKELGATHTVNAAKED---A--------------- 244 (367)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcC--CCeEEEEeC--CHHHH-HHHHHhCCceEecCCccc---H---------------
Confidence 4788886 7999999999998763 45 544432 22332 445566655443222111 1
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc-eeee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALA 198 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~-iaLA 198 (369)
.+.+.+......+|.|++.+.|.+.+...+.+++.+-+ +.+.
T Consensus 245 -~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 245 -VAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred -HHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 11222333334589999998876577777788876544 3344
No 436
>PLN02827 Alcohol dehydrogenase-like
Probab=73.49 E-value=30 Score=34.32 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=54.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |.||..++.+.+.. .++ |++.. .+-+++ +.++++..+.+.-..+. .+.+.+
T Consensus 195 ~~VlV~G~-G~vG~~~iqlak~~--G~~~vi~~~--~~~~~~-~~a~~lGa~~~i~~~~~-~~~~~~------------- 254 (378)
T PLN02827 195 SSVVIFGL-GTVGLSVAQGAKLR--GASQIIGVD--INPEKA-EKAKTFGVTDFINPNDL-SEPIQQ------------- 254 (378)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEC--CCHHHH-HHHHHcCCcEEEccccc-chHHHH-------------
Confidence 58999995 99999999999876 453 44432 233443 56677877655322110 011111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
.+.++... .+|.|++++.+...+.-.+.+++.|
T Consensus 255 ---~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 255 ---VIKRMTGG-GADYSFECVGDTGIATTALQSCSDG 287 (378)
T ss_pred ---HHHHHhCC-CCCEEEECCCChHHHHHHHHhhccC
Confidence 12223222 5899999865544566677777665
No 437
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.46 E-value=25 Score=34.52 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
.++|+|+|+ |.||..++..+++. ...+| .+ ++++.++..+.+++|..
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~~-g~~~V-~v-~~r~~~ra~~la~~~g~ 224 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAAK-GVAEI-TI-ANRTYERAEELAKELGG 224 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHHc-CCCEE-EE-EeCCHHHHHHHHHHcCC
Confidence 357999998 99999999998873 21223 22 35777888888888865
No 438
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=73.39 E-value=42 Score=28.43 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=38.0
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC
Q 017567 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (369)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d 133 (369)
||..-....-+. ..|+|+-|....-.+.+.+.+.+.+|++|+++-
T Consensus 14 lG~~~~~~~l~~-~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 14 RGAKVIARALRD-AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 677766666553 479999999998999999999999999999964
No 439
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.39 E-value=16 Score=34.96 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=47.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
+++.|+| +|.||..++.+.+.. ..+++..+ ..+-++|. .++++. ++ |..
T Consensus 146 ~~vlV~G-~G~vG~~a~q~ak~~--G~~~v~~~-~~~~~rl~-~a~~~~----~i-~~~--------------------- 194 (308)
T TIGR01202 146 LPDLIVG-HGTLGRLLARLTKAA--GGSPPAVW-ETNPRRRD-GATGYE----VL-DPE--------------------- 194 (308)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHc--CCceEEEe-CCCHHHHH-hhhhcc----cc-Chh---------------------
Confidence 4688887 588888888888776 45544433 33444443 222221 11 100
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
++ ....+|+|+++.-+-..+.-.+.+++.|-++.
T Consensus 195 ~~------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 195 KD------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred hc------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEE
Confidence 00 11248999998666566677777777766554
No 440
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=73.29 E-value=31 Score=34.19 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCc
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDK 102 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~ 102 (369)
...||.|-|-||.+|..-++.+..++-+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 32 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN 32 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC
Confidence 3458999999999999999999986433
No 441
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.08 E-value=3.3 Score=41.25 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhC-----CCceEEEEEeecCCHHHHHHHHHhh
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEH-----EDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~-----pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|+||+|+|++|.||.+++--+... ++..+++-+=-+.|.+++..++.++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 55 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL 55 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh
Confidence 3789999999999999987766531 2333566665555666555555444
No 442
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=73.04 E-value=21 Score=36.15 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~Fk 125 (369)
+++|+|+|+ |-+|.++...++.+- .+|+.. ..+.+.+.+...+|.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG--a~V~v~--d~~~~~~~~l~~~~g 211 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG--ATVTIL--DINIDRLRQLDAEFG 211 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC--CeEEEE--ECCHHHHHHHHHhcC
Confidence 467999998 999999999999873 455553 456777666556664
No 443
>PRK06849 hypothetical protein; Provisional
Probab=72.88 E-value=39 Score=33.69 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=29.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 017567 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~ 112 (369)
.+|+|.|+|+...+|.+...-+.+. .++|+++....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4789999999999888888888876 78888876543
No 444
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=72.76 E-value=14 Score=39.37 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCeeEEEEecCChHhHHHHH-HHHhCCCceEEEEEee
Q 017567 75 GPKPISVLGSTGSIGTQTLD-IVAEHEDKFRVVALAA 110 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTLd-VI~~~pd~F~VvaLaa 110 (369)
..|+|.|.|+||+.|+-.++ ++|..||-.+|.-|--
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR 47 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIR 47 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEe
Confidence 34789999999999999986 5567889999998864
No 445
>PRK05086 malate dehydrogenase; Provisional
Probab=72.74 E-value=5.3 Score=39.52 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.4
Q ss_pred eeEEEEecCChHhHHHHHHHHh-CCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~-~pd~F~VvaLa 109 (369)
+||+|+|+||.||.+..-.+.. .+...+++.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d 34 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEe
Confidence 5899999999999999877754 45555666555
No 446
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.71 E-value=38 Score=31.90 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=23.9
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEE
Q 017567 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVA 107 (369)
Q Consensus 76 ~kkI~ILGSTG--SIGtqTLdVI~~~pd~F~Vva 107 (369)
.|.+.|.|+++ -||..+..-+.+. .++|+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~--G~~vil 37 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE--GAELAF 37 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEE
Confidence 36899999986 7999988888775 567664
No 447
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=72.18 E-value=19 Score=36.16 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=39.1
Q ss_pred CCeeEEEEecCChHhHHHH-HH-HHhCCCceEEEEE-----------------ee--------cCCHHHHHHHHHhhCCC
Q 017567 75 GPKPISVLGSTGSIGTQTL-DI-VAEHEDKFRVVAL-----------------AA--------GSNITLLADQVKRFKPQ 127 (369)
Q Consensus 75 ~~kkI~ILGSTGSIGtqTL-dV-I~~~pd~F~VvaL-----------------aa--------g~Nv~lL~eQ~~~FkP~ 127 (369)
..++|.|.|.||| |+.|+ .- ++..|+.-+|+.+ .+ .-+.+.|.+.+.+.+|+
T Consensus 159 ~~~nili~G~tgS-GKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 159 SKKNIIISGGTST-GKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred cCCcEEEECCCCC-CHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 3579999999999 55554 33 3444544333332 11 11345666777777787
Q ss_pred EEEEcC---chhHHHHHHHH
Q 017567 128 VVAVRN---ESLLDEIKEAL 144 (369)
Q Consensus 128 ~V~v~d---e~~~~~l~~~l 144 (369)
.+.+.. .+.+..++...
T Consensus 238 ~IivGEiR~~ea~~~l~a~~ 257 (332)
T PRK13900 238 RIIVGELRGAEAFSFLRAIN 257 (332)
T ss_pred eEEEEecCCHHHHHHHHHHH
Confidence 777643 33344444443
No 448
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.70 E-value=34 Score=34.34 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=74.7
Q ss_pred HhHHHHHHHHhCCCceEEEEEeec-CCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEecHHHHHHHhcC
Q 017567 88 IGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARH 166 (369)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaag-~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~~~~ 166 (369)
+|...++=+.+.... |+-++.| .|+|.+.....++.|.+.++..+..-..+...+. +.-..
T Consensus 110 ~g~e~l~e~l~~~~g--vIl~~~H~gn~E~~~~~l~~~~~~~~~~yrp~~np~ld~~i~----------------~~R~r 171 (308)
T COG1560 110 EGLEHLEEALANGRG--VILVTPHFGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLIT----------------RGRER 171 (308)
T ss_pred cCHHHHHHHHHcCCC--EEEEecCcchHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH----------------HHHHh
Confidence 466666666665454 5555665 4899999999999998777755433323332211 01111
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeeccc--------------chhHHhhhcCCeEeecc
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGP--------------FVLPLAHKHNIKILPAD 225 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~--------------li~~~a~k~~~~IlPVD 225 (369)
....+| .. ...|+++.+++++.|..|+++.=+-...++. .+-.+|+++++.++|+=
T Consensus 172 ~~~~~~-~~--~~~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vip~~ 241 (308)
T COG1560 172 FGGRLL-PR--KGEGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVF 241 (308)
T ss_pred cCCccc-CC--CchhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEEEEE
Confidence 111111 11 1168999999999999999887666666665 23568899999999973
No 449
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=71.41 E-value=37 Score=30.22 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=44.9
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC
Q 017567 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (369)
Q Consensus 80 ~ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d 133 (369)
+|+|..| .||...+..+-+. ..|+|+=|-...-.+++.+.+++.+|+.|+++.
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 4556665 5899888887765 589999999999999999999999999999864
No 450
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.38 E-value=45 Score=30.99 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=32.9
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhC
Q 017567 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaa-g~Nv~lL~eQ~~~Fk 125 (369)
.|.++|.|++ +-||..+-.-+.+. .++|+...- .++.+.+.+...+.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~~ 57 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTLE 57 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHcC
Confidence 3689999997 89999988888875 567765421 134455666655553
No 451
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=71.25 E-value=11 Score=34.82 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=31.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
||+|+|+||.+|+.....+.+. .++|... .++-+.+.++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~--G~~V~v~--~r~~~~~~~l~~~ 43 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA--GNKIIIG--SRDLEKAEEAAAK 43 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC--CCEEEEE--EcCHHHHHHHHHH
Confidence 6999999999999998888775 3677643 4566666665544
No 452
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=71.12 E-value=42 Score=32.06 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=49.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|+ |++|..++.+.+.... .+|++. .++-+++ +.++++..+.+.-..+.. +.
T Consensus 168 ~~vlI~g~-g~~g~~~~~~a~~~G~-~~v~~~--~~~~~~~-~~~~~~g~~~~v~~~~~~---~~--------------- 224 (345)
T cd08286 168 DTVAIVGA-GPVGLAALLTAQLYSP-SKIIMV--DLDDNRL-EVAKKLGATHTVNSAKGD---AI--------------- 224 (345)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CeEEEE--cCCHHHH-HHHHHhCCCceecccccc---HH---------------
Confidence 57888776 9999999998887641 345552 2333442 345556554433221111 11
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCC
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (369)
+.+.++.....+|.|++++.+-..+...+.+++.+-
T Consensus 225 -~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g 260 (345)
T cd08286 225 -EQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGG 260 (345)
T ss_pred -HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCc
Confidence 122233333458999988743333344445554443
No 453
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=70.86 E-value=6.6 Score=35.26 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (369)
|+++|.|+||.||.+...-+.+......|+.+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999988775334555543
No 454
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=70.51 E-value=61 Score=30.81 Aligned_cols=96 Identities=9% Similarity=0.112 Sum_probs=53.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCch-hHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~-~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |++|..++.+.+.. ..+++..+. ++-+++ ++++++..+.+.-.++. .++.+.
T Consensus 163 ~~VlI~g~-g~vg~~~~~la~~~--G~~~v~~~~-~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~-------------- 223 (341)
T cd08262 163 EVALVIGC-GPIGLAVIAALKAR--GVGPIVASD-FSPERR-ALALAMGADIVVDPAADSPFAAWA-------------- 223 (341)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEC-CCHHHH-HHHHHcCCcEEEcCCCcCHHHHHH--------------
Confidence 58999985 99999999999976 344444332 333444 35667776544322221 111111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.+.+......+|+|++...+...+...+..++.+-+
T Consensus 224 ---~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~ 259 (341)
T cd08262 224 ---AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGR 259 (341)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 112222334589999875443345556666655433
No 455
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=70.51 E-value=31 Score=33.75 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=52.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |+||..++.+.+.. .. +|+++.. +-+++ +.++++..+.+.-..+.. ..+.
T Consensus 186 ~~vlV~G~-g~vG~~~~~~a~~~--G~~~Vi~~~~--~~~~~-~~~~~~ga~~~i~~~~~~-~~~~-------------- 244 (365)
T cd08277 186 STVAVFGL-GAVGLSAIMGAKIA--GASRIIGVDI--NEDKF-EKAKEFGATDFINPKDSD-KPVS-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCCcEecccccc-chHH--------------
Confidence 57999985 99999999998876 45 4655543 33443 345677766554322110 0111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (369)
+.+.++.. ..+|+|+++..+-..+.-.+.+++.
T Consensus 245 --~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~ 277 (365)
T cd08277 245 --EVIREMTG-GGVDYSFECTGNADLMNEALESTKL 277 (365)
T ss_pred --HHHHHHhC-CCCCEEEECCCChHHHHHHHHhccc
Confidence 12223333 3588888876555555556666643
No 456
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=70.45 E-value=45 Score=31.68 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=56.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.|++|.+|..++.+.+.. ..+|++.+..+ . .+.++++..+.+.-.... .+.+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~---~-~~~~~~~g~~~~~~~~~~---~~~~~------------ 221 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAW--GAHVTTTCSTD---A-IPLVKSLGADDVIDYNNE---DFEEE------------ 221 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCcc---h-HHHHHHhCCceEEECCCh---hHHHH------------
Confidence 358999999999999999998886 45777765322 2 235566665443322111 11111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
+.....+|.|++.+.|- .+...+..+..+=++
T Consensus 222 -------l~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~~ 253 (350)
T cd08248 222 -------LTERGKFDVILDTVGGD-TEKWALKLLKKGGTY 253 (350)
T ss_pred -------HHhcCCCCEEEECCChH-HHHHHHHHhccCCEE
Confidence 11123589999886665 677777777655443
No 457
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.37 E-value=16 Score=32.81 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=47.8
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchhhHHHhh
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHsAIfQ~L 235 (369)
+.+.+.++. +.++..-.+..-.-+...+..++.. .=-.|.||..+.++|+++|..-++++|.-.+|.+.|
T Consensus 91 ~~~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~~-------G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al 160 (176)
T PF06506_consen 91 GLESIEELL---GVDIKIYPYDSEEEIEAAIKQAKAE-------GVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRAL 160 (176)
T ss_dssp CHHHHHHHH---T-EEEEEEESSHHHHHHHHHHHHHT-------T--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHH
T ss_pred HHHHHHHHh---CCceEEEEECCHHHHHHHHHHHHHc-------CCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHH
Confidence 344455554 4567777776666666666555432 233567788899999999999999999999999888
Q ss_pred c
Q 017567 236 Q 236 (369)
Q Consensus 236 ~ 236 (369)
.
T Consensus 161 ~ 161 (176)
T PF06506_consen 161 E 161 (176)
T ss_dssp H
T ss_pred H
Confidence 6
No 458
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=70.24 E-value=19 Score=33.00 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.1
Q ss_pred eEEEEecCChHhHHHHHHHHhC--CCceEEEEEeecCCHHHHHHHHHhh
Q 017567 78 PISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~--pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.+.|.|+||.||..+..-+.+. ...++|+.+ ++|.+.+.+...+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~--~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLS--ARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEE--EcCHHHHHHHHHHH
Confidence 4789999999999988877652 135777665 35666665555444
No 459
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=70.11 E-value=41 Score=30.54 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=53.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.++|.|+|++|.+|..++.+.+.. .++|+.++- +. . .+.++++....+.-........
T Consensus 145 ~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~-~~--~-~~~~~~~g~~~~~~~~~~~~~~---------------- 202 (309)
T cd05289 145 GQTVLIHGAAGGVGSFAVQLAKAR--GARVIATAS-AA--N-ADFLRSLGADEVIDYTKGDFER---------------- 202 (309)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCEEEEEec-ch--h-HHHHHHcCCCEEEeCCCCchhh----------------
Confidence 368999999999999999998875 567776653 22 2 3344666654433211111000
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
......+|.+++.+.|. .+...+.++..+-+
T Consensus 203 -------~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~ 233 (309)
T cd05289 203 -------AAAPGGVDAVLDTVGGE-TLARSLALVKPGGR 233 (309)
T ss_pred -------ccCCCCceEEEECCchH-HHHHHHHHHhcCcE
Confidence 11223488999875554 56666666665543
No 460
>PLN02702 L-idonate 5-dehydrogenase
Probab=69.93 E-value=57 Score=31.66 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=58.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|+| .|++|..++.+.+...-+ .|++. .++-+++ +.++++....+...+... ..+.+
T Consensus 183 ~~vlI~g-~g~vG~~~~~~a~~~G~~-~v~~~--~~~~~~~-~~~~~~g~~~~~~~~~~~-~~~~~-------------- 242 (364)
T PLN02702 183 TNVLVMG-AGPIGLVTMLAARAFGAP-RIVIV--DVDDERL-SVAKQLGADEIVLVSTNI-EDVES-------------- 242 (364)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCC-EEEEE--CCCHHHH-HHHHHhCCCEEEecCccc-ccHHH--------------
Confidence 5799997 599999999999986322 13333 2344443 367778776665432110 01111
Q ss_pred HHHHHHH--hcCCCCCEEEEeccCccCcHHHHHHHHcCCce
Q 017567 157 EQGVIEA--ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (369)
Q Consensus 157 ~~gl~~~--~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (369)
.+.++ .....+|.|++.+.+-..+...+..++.+-++
T Consensus 243 --~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 281 (364)
T PLN02702 243 --EVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKV 281 (364)
T ss_pred --HHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 11111 11235899999876667788888888776554
No 461
>PRK06523 short chain dehydrogenase; Provisional
Probab=69.88 E-value=6.6 Score=35.82 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=26.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|++.|.|+||.||.++.+-+.+. .++|+++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~ 40 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEA--GARVVTTA 40 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHC--CCEEEEEe
Confidence 68999999999999999988875 67887764
No 462
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.73 E-value=45 Score=34.14 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=61.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC-chhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN-ESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d-e~~~~~l~~~l~~~~~~~~v~~ 155 (369)
++|+|.|.- -.|-.++++.+.. -.+|+|++-+.+ ++ +.++++..+++..+. ++..+.+++
T Consensus 168 ~~V~I~G~G-GlGh~avQ~Aka~--ga~Via~~~~~~--K~-e~a~~lGAd~~i~~~~~~~~~~~~~------------- 228 (339)
T COG1064 168 KWVAVVGAG-GLGHMAVQYAKAM--GAEVIAITRSEE--KL-ELAKKLGADHVINSSDSDALEAVKE------------- 228 (339)
T ss_pred CEEEEECCc-HHHHHHHHHHHHc--CCeEEEEeCChH--HH-HHHHHhCCcEEEEcCCchhhHHhHh-------------
Confidence 689999997 6899999998876 399999985544 43 457888888887643 222222221
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
. +|.+++.++ -.-+.+.+.+++.|=++.
T Consensus 229 ----------~--~d~ii~tv~-~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 229 ----------I--ADAIIDTVG-PATLEPSLKALRRGGTLV 256 (339)
T ss_pred ----------h--CcEEEECCC-hhhHHHHHHHHhcCCEEE
Confidence 1 777777777 777777777777775543
No 463
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=69.70 E-value=43 Score=34.46 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=46.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEee-------------cCCHHHHHHHHHhhCCCEEEEcCch
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-------------GSNITLLADQVKRFKPQVVAVRNES 135 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaa-------------g~Nv~lL~eQ~~~FkP~~V~v~de~ 135 (369)
.+++.|+|+ |.-|.+..+..+++|+ .|+++|+.. -.+.+.+.+.+++.+.+.|.++.+.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~ 196 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDE 196 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECch
Confidence 468999986 6778877777666665 799999872 1367889999999999999987654
No 464
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=69.67 E-value=25 Score=36.29 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=45.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec--CCHHHHHHHHHhhCCCEEEEcC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--SNITLLADQVKRFKPQVVAVRN 133 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag--~Nv~lL~eQ~~~FkP~~V~v~d 133 (369)
|-..++.|+||-=|.-+.|..+++--+..+|-..-| -|.+.+.+-..+++|+.|++..
T Consensus 91 Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~h 150 (385)
T KOG2862|consen 91 PGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTH 150 (385)
T ss_pred CCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEe
Confidence 335678899999999999999999444444433333 4889999999999999999854
No 465
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=69.55 E-value=3.6 Score=43.97 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=34.9
Q ss_pred CCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecc
Q 017567 168 DAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (369)
Q Consensus 168 ~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG 207 (369)
++|+||.| +|.|||...++|.+.|.+|.|..|-...-|+
T Consensus 7 ~~DVlVVG-~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIG-AGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEEC-ccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 58999999 9999999999999999999999999775543
No 466
>PRK07121 hypothetical protein; Validated
Probab=69.50 E-value=3.8 Score=42.23 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=33.4
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccce
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL 203 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsL 203 (369)
.++|+||.+ .|.+||...++|.++|.+|.|.-|...
T Consensus 19 ~~~DVvVVG-aG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVG-FGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 479999999 999999999999999999999999876
No 467
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.44 E-value=48 Score=29.19 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=44.8
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC
Q 017567 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (369)
Q Consensus 80 ~ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d 133 (369)
+|+|+.| .+|...+...-+. ..|+|+-|-..--.+.+.+.+.+.+|++|+++.
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4666665 4888888887764 689999999999999999999999999999964
No 468
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=69.24 E-value=35 Score=31.40 Aligned_cols=92 Identities=23% Similarity=0.338 Sum_probs=59.9
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC--chhHH---HHHHHHhcCCC-
Q 017567 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLD---EIKEALANVEE- 149 (369)
Q Consensus 80 ~ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d--e~~~~---~l~~~l~~~~~- 149 (369)
+|+|+.+ .||..-+..+-+. ..|+|+-|-.+--.+.+.+.+++.+|++|+++- ..... ++-+.+...+.
T Consensus 85 vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 85 VVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCC
Confidence 5666655 6898888776653 589999888888899999999999999999864 22222 23233433333
Q ss_pred -CceEEecHHHHHH-HhcCCCCCEE
Q 017567 150 -KPEILAGEQGVIE-AARHPDAVTV 172 (369)
Q Consensus 150 -~~~v~~G~~gl~~-~~~~~~~D~V 172 (369)
++.|+.|-..+.+ .++.-.+|..
T Consensus 164 ~~~~i~vGG~~~~~~~~~~~GaD~~ 188 (201)
T cd02070 164 DKVKVMVGGAPVNQEFADEIGADGY 188 (201)
T ss_pred cCCeEEEECCcCCHHHHHHcCCcEE
Confidence 5666666544322 4444445543
No 469
>PRK07041 short chain dehydrogenase; Provisional
Probab=69.14 E-value=26 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=29.6
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 017567 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (369)
Q Consensus 80 ~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~F 124 (369)
.|.|+||.||.+..+-+.+. .++|+.+. +|.+.+.+...+.
T Consensus 1 lItGas~~iG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~ 41 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE--GARVTIAS--RSRDRLAAAARAL 41 (230)
T ss_pred CeecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 38999999999999988876 57776653 4556665555443
No 470
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=68.78 E-value=39 Score=31.76 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=52.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|++|..++.+.+.. .++|++.+ .+-+++ +.++++....+...+.
T Consensus 157 ~~vlV~g-~g~vg~~~~q~a~~~--G~~vi~~~--~~~~~~-~~~~~~g~~~~~~~~~---------------------- 208 (319)
T cd08242 157 DKVAVLG-DGKLGLLIAQVLALT--GPDVVLVG--RHSEKL-ALARRLGVETVLPDEA---------------------- 208 (319)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEc--CCHHHH-HHHHHcCCcEEeCccc----------------------
Confidence 5799997 699999999999887 46666554 333333 4555565544332100
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+ .....+|.+++.+-+-..+.-...+++.+-++.
T Consensus 209 -----~-~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 209 -----E-SEGGGFDVVVEATGSPSGLELALRLVRPRGTVV 242 (319)
T ss_pred -----c-ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 0 112348899987544455666666776665554
No 471
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.66 E-value=66 Score=30.79 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=54.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
..+|.|.| .|++|..++.+.+....+ +|++. .++-++. ++++++..+.+.-..+.....+
T Consensus 164 g~~vlV~g-~g~vg~~~~~la~~~G~~-~v~~~--~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~--------------- 223 (341)
T cd05281 164 GKSVLITG-CGPIGLMAIAVAKAAGAS-LVIAS--DPNPYRL-ELAKKMGADVVINPREEDVVEV--------------- 223 (341)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCc-EEEEE--CCCHHHH-HHHHHhCcceeeCcccccHHHH---------------
Confidence 35788876 599999999999987321 34444 2333444 4556666554432211111111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.++.....+|++++.+-+-..+...+..+..+=+
T Consensus 224 -----~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~ 257 (341)
T cd05281 224 -----KSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGR 257 (341)
T ss_pred -----HHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 2223334589999987665667777777765543
No 472
>PRK12320 hypothetical protein; Provisional
Probab=68.58 E-value=6.4 Score=43.62 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
||.|.|+||+||....+-+.+. .++|+++.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~--G~~Vi~ld 31 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA--GHTVSGIA 31 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC--CCEEEEEe
Confidence 6999999999999999977764 57898887
No 473
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=68.56 E-value=66 Score=30.83 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=56.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEE
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~ 154 (369)
..+|.|+| +|++|..+..+.+.. .+ .|+++. ++-+++ +.++++..+.+.-..+.. +
T Consensus 176 ~~~vlI~g-~g~vg~~~~~~a~~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~---~-------------- 232 (350)
T cd08240 176 DEPVVIIG-AGGLGLMALALLKAL--GPANIIVVD--IDEAKL-EAAKAAGADVVVNGSDPD---A-------------- 232 (350)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHhCCcEEecCCCcc---H--------------
Confidence 35799997 599999999999987 45 344443 333443 344666654332111110 0
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceee
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (369)
.+.+.+.... .+|+|++...+-..+...+.++..+-++.+
T Consensus 233 --~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 233 --AKRIIKAAGG-GVDAVIDFVNNSATASLAFDILAKGGKLVL 272 (350)
T ss_pred --HHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence 1223333333 589999876545667777888877655443
No 474
>PRK08618 ornithine cyclodeaminase; Validated
Probab=68.54 E-value=38 Score=33.45 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 160 l~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
+.++++ ++|+|+++.....-+.. ++++.|+.|.
T Consensus 186 ~~~~~~--~aDiVi~aT~s~~p~i~--~~l~~G~hV~ 218 (325)
T PRK08618 186 ADEAIE--EADIIVTVTNAKTPVFS--EKLKKGVHIN 218 (325)
T ss_pred HHHHHh--cCCEEEEccCCCCcchH--HhcCCCcEEE
Confidence 344443 58999999876654443 8889998874
No 475
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.49 E-value=45 Score=31.44 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=54.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.| +|.+|..++.+.++. .++|++++... +++ +.++++..+.+.-.++.
T Consensus 169 ~~vlV~g-~g~vg~~~~~la~~~--g~~v~~~~~~~--~~~-~~~~~~g~~~~~~~~~~--------------------- 221 (329)
T cd08298 169 QRLGLYG-FGASAHLALQIARYQ--GAEVFAFTRSG--EHQ-ELARELGADWAGDSDDL--------------------- 221 (329)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEcCCh--HHH-HHHHHhCCcEEeccCcc---------------------
Confidence 4788887 799999999988876 36777665432 333 44466665443211110
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeee
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLA 198 (369)
....+|.++....+...+...+.+++.+-++.+.
T Consensus 222 --------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 222 --------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred --------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 0124788887644556778888888877666554
No 476
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=68.15 E-value=23 Score=28.88 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=55.9
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchh-HHHHHHHHhcCCCCceEEecHHHHHHHhcC
Q 017567 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKPEILAGEQGVIEAARH 166 (369)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~-~~~l~~~l~~~~~~~~v~~G~~gl~~~~~~ 166 (369)
||..++.+.+..- .+|++.. +|-+++ +.++++....+.-.++.. .+.++ ++...
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~--~~~~k~-~~~~~~Ga~~~~~~~~~~~~~~i~--------------------~~~~~ 56 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATD--RSEEKL-ELAKELGADHVIDYSDDDFVEQIR--------------------ELTGG 56 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEE--SSHHHH-HHHHHTTESEEEETTTSSHHHHHH--------------------HHTTT
T ss_pred hHHHHHHHHHHcC--CEEEEEE--CCHHHH-HHHHhhcccccccccccccccccc--------------------ccccc
Confidence 7899999999875 7888766 454554 678899988887665543 22333 33333
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
..+|+|++.+..-..+.-.+.+++.+=++.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEE
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEE
Confidence 468999998664566666666666654443
No 477
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.03 E-value=54 Score=30.46 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=53.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..++.+.+.. ..+.++.. ..-++ .+.++++..+.+.-......
T Consensus 140 ~~vli~g~~g~~g~~~~~~a~~~-~~~~~~~~---~~~~~-~~~~~~~g~~~~~~~~~~~~------------------- 195 (337)
T cd08275 140 QSVLVHSAAGGVGLAAGQLCKTV-PNVTVVGT---ASASK-HEALKENGVTHVIDYRTQDY------------------- 195 (337)
T ss_pred CEEEEEcCcchHHHHHHHHHHHc-cCcEEEEe---CCHHH-HHHHHHcCCcEEeeCCCCcH-------------------
Confidence 58999999999999999999987 44544332 22122 23445566654332221111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcC
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (369)
.+.+.+... ..+|.+++.+.| ..+...+.++..+
T Consensus 196 ~~~~~~~~~-~~~d~v~~~~g~-~~~~~~~~~l~~~ 229 (337)
T cd08275 196 VEEVKKISP-EGVDIVLDALGG-EDTRKSYDLLKPM 229 (337)
T ss_pred HHHHHHHhC-CCceEEEECCcH-HHHHHHHHhhccC
Confidence 112223332 358999988655 4566667777554
No 478
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=67.89 E-value=38 Score=33.07 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=29.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~ 123 (369)
+||+|+|+ |-+|..+.--+....-..+|+.+- .|.+++..++.+
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D--~~~~~~~~~a~d 44 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLID--INEEKAEGEALD 44 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEe--CCcchhhHhHhh
Confidence 47999996 899999998887764333554443 455665555443
No 479
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.76 E-value=4.4 Score=43.85 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=35.9
Q ss_pred cCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeeccc
Q 017567 165 RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGP 208 (369)
Q Consensus 165 ~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~ 208 (369)
+..++|+||.| +|.|||...++|.++|.+|.|..|...+.+|.
T Consensus 32 ~~~~~DVlVVG-~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~ 74 (640)
T PRK07573 32 NKRKFDVIVVG-TGLAGASAAATLGELGYNVKVFCYQDSPRRAH 74 (640)
T ss_pred cccccCEEEEC-ccHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Confidence 33468999999 99999999999999999999999876654443
No 480
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.75 E-value=64 Score=31.68 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=56.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.| .|++|..++.+.+.. .. +|++ ..++-+++ +.++++....+...++...+
T Consensus 178 ~~vlI~g-~g~vg~~~~~~a~~~--G~~~vi~--~~~~~~~~-~~~~~~g~~~v~~~~~~~~~----------------- 234 (375)
T cd08282 178 DTVAVFG-AGPVGLMAAYSAILR--GASRVYV--VDHVPERL-DLAESIGAIPIDFSDGDPVE----------------- 234 (375)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCCEEEE--ECCCHHHH-HHHHHcCCeEeccCcccHHH-----------------
Confidence 5788865 599999999999876 33 5666 33455554 45667775322111111111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCcc-----------CcHHHHHHHHcCCceee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCA-----------GLKPTVAAIEAGKDIAL 197 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~a-----------GL~pt~~Ai~~gK~iaL 197 (369)
.+.++.. ..+|.+++.+.+-+ ++...+..++.+-++.+
T Consensus 235 ---~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 235 ---QILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred ---HHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 2223333 35899999876653 47778888888877744
No 481
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=67.59 E-value=4.2 Score=43.82 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=35.0
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeec
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG 206 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~a 206 (369)
.++|+||.| .|.|||...++|.+.|.+|.|..|-...-|
T Consensus 28 ~~~DVlVIG-~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVG-AGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEEC-ccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 468999999 999999999999999999999999887544
No 482
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=67.37 E-value=16 Score=34.62 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=37.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC---------CHHHHHHHHHhhC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---------NITLLADQVKRFK 125 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~---------Nv~lL~eQ~~~Fk 125 (369)
.++|+|.| .|.||..+.+.+.++ ..+|++++=.+ |++.|.+..+++.
T Consensus 31 ~~~v~I~G-~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g 86 (227)
T cd01076 31 GARVAIQG-FGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHG 86 (227)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC
Confidence 47899999 699999999999886 79999986432 6777766655543
No 483
>PRK12367 short chain dehydrogenase; Provisional
Probab=67.31 E-value=26 Score=32.89 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=26.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (369)
|++.|.|+||-||..+..-+.+. .++|+.++
T Consensus 15 k~~lITGas~gIG~ala~~l~~~--G~~Vi~~~ 45 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAK--GAKVIGLT 45 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 68999999999999999888765 57787764
No 484
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=67.21 E-value=19 Score=28.25 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=37.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFKPQVV 129 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaag~Nv~lL~eQ~~~FkP~~V 129 (369)
||+|+ .+|.+|+.-+.-+.++. ...+|.- ...+|-+++.+..+++.....
T Consensus 1 kI~iI-G~G~mg~al~~~l~~~g~~~~~v~~-~~~r~~~~~~~~~~~~~~~~~ 51 (96)
T PF03807_consen 1 KIGII-GAGNMGSALARGLLASGIKPHEVII-VSSRSPEKAAELAKEYGVQAT 51 (96)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTTS-GGEEEE-EEESSHHHHHHHHHHCTTEEE
T ss_pred CEEEE-CCCHHHHHHHHHHHHCCCCceeEEe-eccCcHHHHHHHHHhhccccc
Confidence 68999 68999999999888764 3344543 336889999999999885443
No 485
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=67.19 E-value=20 Score=36.22 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=94.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCC-------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCC
Q 017567 78 PISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK 150 (369)
Q Consensus 78 kI~ILGSTGSIGtqTLdVI~~~pd-------~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~ 150 (369)
+|+|.|+ |-||..-|+-|..+.. .|+|++++--.. ++ .-+.|.|..+ -.+++..|....
T Consensus 5 nVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~--~~--~skD~~p~nl-------~sewk~~L~~st-- 70 (364)
T KOG0455|consen 5 NVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES--LV--ASKDVLPENL-------NSEWKSELIKST-- 70 (364)
T ss_pred cEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccc--cc--cccccChhhh-------chHHHHHHHHhc--
Confidence 6888885 6799999998887655 789999874321 11 2345555433 245665443221
Q ss_pred ceEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhh--cCC---------
Q 017567 151 PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHK--HNI--------- 219 (369)
Q Consensus 151 ~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k--~~~--------- 219 (369)
...+.=+.-+..++..+.+-++|+--+...=...-.++++.|--|+++||...-+-=.--.+++.. .+.
T Consensus 71 ~~alsLdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVG 150 (364)
T KOG0455|consen 71 GSALSLDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVG 150 (364)
T ss_pred CCcccHHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeecccc
Confidence 123332233444777788888888766666556667899999999999998765543333333321 121
Q ss_pred eEeecccchhhHHHhhcCCCCCccceEEEeecC
Q 017567 220 KILPADSEHSAIFQCIQGLPEGALRRIILTASG 252 (369)
Q Consensus 220 ~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASG 252 (369)
.=+||=|--+-|-| .| ++|.||-=.=||
T Consensus 151 AGLPiIs~L~eiI~--tG---Dev~kIeGifSG 178 (364)
T KOG0455|consen 151 AGLPIISSLNEIIS--TG---DEVHKIEGIFSG 178 (364)
T ss_pred CCchhHHHHHHHHh--cC---CceeEEEEEeec
Confidence 13677777776665 23 356666543444
No 486
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=67.06 E-value=33 Score=28.40 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=36.1
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcC
Q 017567 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (369)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d 133 (369)
+|..-+..+-+. ..|+|+-|-.....+.+.+.+.+.+|++|+++-
T Consensus 14 lG~~~~~~~l~~-~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 14 IGKNIVARALRD-AGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 566655554442 589999988888899999999999999999864
No 487
>PRK06217 hypothetical protein; Validated
Probab=66.95 E-value=3.8 Score=36.58 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=16.2
Q ss_pred CeeEEEEecCChHhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDI 95 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdV 95 (369)
|++|+|.|.+|| |++|+--
T Consensus 1 ~~~I~i~G~~Gs-GKSTla~ 19 (183)
T PRK06217 1 MMRIHITGASGS-GTTTLGA 19 (183)
T ss_pred CeEEEEECCCCC-CHHHHHH
Confidence 468999999999 9998754
No 488
>PRK06988 putative formyltransferase; Provisional
Probab=66.48 E-value=65 Score=32.00 Aligned_cols=131 Identities=12% Similarity=0.067 Sum_probs=75.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--C-----HHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--N-----ITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~--N-----v~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~ 148 (369)
|+||+++|+ +.+|..+|+-+.+. .++|+++..+. . ..-+.+.|++..-.+....+-. .+++.+.+...+
T Consensus 2 ~mkIvf~Gs-~~~a~~~L~~L~~~--~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~-~~~~~~~l~~~~ 77 (312)
T PRK06988 2 KPRAVVFAY-HNVGVRCLQVLLAR--GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPN-DPELRAAVAAAA 77 (312)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhC--CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCC-CHHHHHHHHhcC
Confidence 358999986 55999999998764 58899887753 1 1245677777766554322211 112233333333
Q ss_pred CCceEEecHHHHH--HHhcCCCCCEEEE---eccCccCcHHHHHHHHcCCc-----eeeecccceeecccchhH
Q 017567 149 EKPEILAGEQGVI--EAARHPDAVTVVT---GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (369)
Q Consensus 149 ~~~~v~~G~~gl~--~~~~~~~~D~Vv~---AIvG~aGL~pt~~Ai~~gK~-----iaLANKEsLV~aG~li~~ 212 (369)
.+.-|.++-.-+. ++.+.++...+-. -+..+-|..|+..||.+|.+ |-..+++ +=.|+++.+
T Consensus 78 ~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~ai~~g~~~tGvTih~~~~~--~D~G~Il~q 149 (312)
T PRK06988 78 PDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAK--PDAGAIVDQ 149 (312)
T ss_pred CCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHHHHcCCCceEEEEEEECCC--CCCCCeEEE
Confidence 3444444432222 3444433322221 25578999999999999843 3345554 456777744
No 489
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=66.31 E-value=68 Score=33.12 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=82.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe--ecCCHHHHHHHHHhhC-CCEEEE--cCchhHHHHHHHHhcCCCC
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA--AGSNITLLADQVKRFK-PQVVAV--RNESLLDEIKEALANVEEK 150 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa--ag~Nv~lL~eQ~~~Fk-P~~V~v--~de~~~~~l~~~l~~~~~~ 150 (369)
+++|.+.|+.|.||+.|.=-+.+. .|+|+.+= .+++.+-|....+.+. ++-|.+ .|-.+.+.|++.++....+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~--gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd 79 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKR--GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFD 79 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhC--CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCc
Confidence 578999999999999986555554 78888884 4666666655544443 244433 4444555555554433222
Q ss_pred -ceEEecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccchhHHhhhcCCeEeecccchh
Q 017567 151 -PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHS 229 (369)
Q Consensus 151 -~~v~~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li~~~a~k~~~~IlPVDSEHs 229 (369)
+--+.+..+.-+..+.+ ..+.=|=|+|+-=| +++.+.-.-=.|-+=-|-.+=| -.+.+|+.+||-
T Consensus 80 ~V~Hfa~~~~vgeS~~~p-~~Y~~nNi~gtlnl---Le~~~~~~~~~~V~sssatvYG----------~p~~ip~te~~~ 145 (343)
T KOG1371|consen 80 AVMHFAALAAVGESMENP-LSYYHNNIAGTLNL---LEVMKAHNVKALVFSSSATVYG----------LPTKVPITEEDP 145 (343)
T ss_pred eEEeehhhhccchhhhCc-hhheehhhhhHHHH---HHHHHHcCCceEEEecceeeec----------CcceeeccCcCC
Confidence 33344445555555444 44555555554332 2233222222222211211111 123489988886
Q ss_pred hHHHhhc--CCCCCccceEEEe
Q 017567 230 AIFQCIQ--GLPEGALRRIILT 249 (369)
Q Consensus 230 AIfQ~L~--g~~~~~v~kiiLT 249 (369)
-= |+.. |..+..++.|+.+
T Consensus 146 t~-~p~~pyg~tK~~iE~i~~d 166 (343)
T KOG1371|consen 146 TD-QPTNPYGKTKKAIEEIIHD 166 (343)
T ss_pred CC-CCCCcchhhhHHHHHHHHh
Confidence 54 5543 3334445555544
No 490
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=66.20 E-value=56 Score=31.25 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=52.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcC-chhHHHHHHHHhcCCCCceEE
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRN-ESLLDEIKEALANVEEKPEIL 154 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~d-e~~~~~l~~~l~~~~~~~~v~ 154 (369)
.+|.|.| +|++|..++.+.+.. ..+ |+++ .++-++. +.++++..+.+.-.. ....+.+
T Consensus 163 ~~vlI~~-~g~vg~~a~~la~~~--G~~~v~~~--~~~~~~~-~~~~~~g~~~~v~~~~~~~~~~l-------------- 222 (340)
T TIGR00692 163 KSVLVTG-AGPIGLMAIAVAKAS--GAYPVIVS--DPNEYRL-ELAKKMGATYVVNPFKEDVVKEV-------------- 222 (340)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEE--CCCHHHH-HHHHHhCCcEEEcccccCHHHHH--------------
Confidence 5788855 699999999999876 344 5454 3333333 455666665433221 1112222
Q ss_pred ecHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCc
Q 017567 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (369)
Q Consensus 155 ~G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (369)
.++.....+|.+++...+-..+...+..++.+-+
T Consensus 223 ------~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~ 256 (340)
T TIGR00692 223 ------ADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGR 256 (340)
T ss_pred ------HHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCE
Confidence 2233334588888875444456666666665544
No 491
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=66.20 E-value=48 Score=32.27 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.|+ |++|..++.+.++. .++ |++.+. +-++. +.++++....+.-..+...
T Consensus 184 ~~vLI~g~-g~vG~a~i~lak~~--G~~~Vi~~~~--~~~~~-~~~~~~g~~~vv~~~~~~~------------------ 239 (363)
T cd08279 184 DTVAVIGC-GGVGLNAIQGARIA--GASRIIAVDP--VPEKL-ELARRFGATHTVNASEDDA------------------ 239 (363)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCcEEEEcC--CHHHH-HHHHHhCCeEEeCCCCccH------------------
Confidence 57999975 99999999999876 354 555543 22332 3345565444332211111
Q ss_pred cHHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (369)
.+.+.++.....+|++++.+.+...+...+.+++.+-++.
T Consensus 240 -~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 240 -VEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAV 279 (363)
T ss_pred -HHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEE
Confidence 1122233333458999998776666777777777665443
No 492
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=66.03 E-value=31 Score=35.50 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=33.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP 126 (369)
++|+|+|+ |.||.-+...+..+. -.+|+. .+++.+...+.++++..
T Consensus 181 ~~VlViGa-G~iG~~~a~~L~~~G-~~~V~v--~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 181 KKALLIGA-GEMGELVAKHLLRKG-VGKILI--ANRTYERAEDLAKELGG 226 (417)
T ss_pred CEEEEECC-hHHHHHHHHHHHHCC-CCEEEE--EeCCHHHHHHHHHHcCC
Confidence 68999997 999999999998753 123333 35677777777777754
No 493
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=65.94 E-value=68 Score=31.70 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=56.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEe
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (369)
.+|.|.| .|+||..++.+.+... . +|+++. ++-++ .+.++++..+.+.-..+..-..+
T Consensus 205 ~~VlV~g-~g~vG~~ai~lA~~~G--~~~vi~~~--~~~~~-~~~~~~~g~~~~v~~~~~~~~~~--------------- 263 (384)
T cd08265 205 AYVVVYG-AGPIGLAAIALAKAAG--ASKVIAFE--ISEER-RNLAKEMGADYVFNPTKMRDCLS--------------- 263 (384)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEc--CCHHH-HHHHHHcCCCEEEcccccccccH---------------
Confidence 4799997 5999999999999863 4 455543 23334 36777787766532211100001
Q ss_pred cHHHHHHHhcCCCCCEEEEeccC-ccCcHHHHHHHHcCCcee
Q 017567 156 GEQGVIEAARHPDAVTVVTGIVG-CAGLKPTVAAIEAGKDIA 196 (369)
Q Consensus 156 G~~gl~~~~~~~~~D~Vv~AIvG-~aGL~pt~~Ai~~gK~ia 196 (369)
.+.+.++.....+|+|+++..+ -+.+...++.++.+-++.
T Consensus 264 -~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 264 -GEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIV 304 (384)
T ss_pred -HHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEE
Confidence 1123333333458999988443 224556667776655543
No 494
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.86 E-value=52 Score=33.09 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=34.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIK 141 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~ 141 (369)
+++|.|+|. |-+|....+.+.++ .++|+.+. +|-+...+...++..-.+...|....+.|+
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~--~~~v~vid--~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~ 291 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKE--GYSVKLIE--RDPERAEELAEELPNTLVLHGDGTDQELLE 291 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCeEEEEE--CCHHHHHHHHHHCCCCeEEECCCCCHHHHH
Confidence 567888888 88888888887775 34454443 455554443444322234445544443333
No 495
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=65.51 E-value=4.6 Score=42.40 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=35.8
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceeecccch
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 210 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~aG~li 210 (369)
.++|+||.+ .|.|||...++| +.|.+|.|..|....-||.-.
T Consensus 6 ~~~DVlVVG-~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~ 47 (543)
T PRK06263 6 MITDVLIIG-SGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTV 47 (543)
T ss_pred eccCEEEEC-ccHHHHHHHHHH-hcCCCEEEEEccCCCCCcccc
Confidence 468999999 999999999999 999999999998665566543
No 496
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=65.37 E-value=92 Score=28.24 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=51.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEcCchhHHHHHHHHhcCCCCceEEec
Q 017567 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag~Nv~lL~eQ~~~FkP~~V~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (369)
.+|.|.|++|.+|..++.+.+.. ..+|++.+-.. +. .+.++++..+.+.-..+.. +.+
T Consensus 122 ~~vli~~~~~~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~~---~~~-------------- 179 (303)
T cd08251 122 EHILIQTATGGTGLMAVQLARLK--GAEIYATASSD--DK-LEYLKQLGVPHVINYVEED---FEE-------------- 179 (303)
T ss_pred CEEEEecCCcHHHHHHHHHHHHc--CCEEEEEcCCH--HH-HHHHHHcCCCEEEeCCCcc---HHH--------------
Confidence 58999999999999999998886 46677664332 22 2333566665544322211 111
Q ss_pred HHHHHHHhcCCCCCEEEEeccCccCcHHHHHHHHc
Q 017567 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (369)
Q Consensus 157 ~~gl~~~~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (369)
.+.++.....+|.+++.+.| ..+...+.++..
T Consensus 180 --~i~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~ 211 (303)
T cd08251 180 --EIMRLTGGRGVDVVINTLSG-EAIQKGLNCLAP 211 (303)
T ss_pred --HHHHHcCCCCceEEEECCcH-HHHHHHHHHhcc
Confidence 11222233357888887754 444445555443
No 497
>PRK08118 topology modulation protein; Reviewed
Probab=65.31 E-value=4.1 Score=36.38 Aligned_cols=19 Identities=47% Similarity=0.600 Sum_probs=16.1
Q ss_pred CeeEEEEecCChHhHHHHHH
Q 017567 76 PKPISVLGSTGSIGTQTLDI 95 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLdV 95 (369)
|++|.|+|..|| |++||--
T Consensus 1 m~rI~I~G~~Gs-GKSTlak 19 (167)
T PRK08118 1 MKKIILIGSGGS-GKSTLAR 19 (167)
T ss_pred CcEEEEECCCCC-CHHHHHH
Confidence 578999999998 9999643
No 498
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=65.19 E-value=5.1 Score=42.58 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=33.8
Q ss_pred CCCCEEEEeccCccCcHHHHHHHHcCCceeeecccceee
Q 017567 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA 205 (369)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKEsLV~ 205 (369)
.++|+||.| +|.|||...++|.+.|.+|.|..|....-
T Consensus 4 ~~~DVvVVG-~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIG-GGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEEC-ccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 468999999 99999999999999999999999986543
No 499
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=64.47 E-value=25 Score=27.24 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=22.7
Q ss_pred eeEEEEecCChHhHHHHH--HHHhCCCce-EEEEEeecC
Q 017567 77 KPISVLGSTGSIGTQTLD--IVAEHEDKF-RVVALAAGS 112 (369)
Q Consensus 77 kkI~ILGSTGSIGtqTLd--VI~~~pd~F-~VvaLaag~ 112 (369)
..+.|.|.+|| |++|+- ++....... .++.+++..
T Consensus 3 ~~~~l~G~~G~-GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGS-GKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCC-cHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 47999999998 777765 445544432 466665543
No 500
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=64.46 E-value=9.3 Score=34.00 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=25.1
Q ss_pred CeeEEEEecCChHhHHHHH--HHHhCCCceEEEEE
Q 017567 76 PKPISVLGSTGSIGTQTLD--IVAEHEDKFRVVAL 108 (369)
Q Consensus 76 ~kkI~ILGSTGSIGtqTLd--VI~~~pd~F~VvaL 108 (369)
+|.|+|+|.+|| |+.||- +++++|++|..+..
T Consensus 2 ~r~ivl~Gpsg~-GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGS-GKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTS-SHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCC-CHHHHHHHHHHhccccccccee
Confidence 467999999998 787774 67889999964433
Done!