BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017568
(369 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKA5|Y5957_ARATH Uncharacterized protein At5g39570 OS=Arabidopsis thaliana
GN=At5g39570 PE=1 SV=1
Length = 381
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 163/253 (64%), Gaps = 31/253 (12%)
Query: 1 MPYYADNDDDVTDFDDYDPTPYDGGYDITLTYGRPLPPSDETCYPSSSASDGDFDYARPK 60
MPYY +D+DV DFD++DPTPY GGYDIT+ YGRP+PPSDETCYP SS D DF+Y RP+
Sbjct: 1 MPYYTRDDNDVDDFDEFDPTPYSGGYDITVIYGRPIPPSDETCYPLSSGVDDDFEYERPE 60
Query: 61 FSSHSEPSAYADEALNNEYSSYARPKPRPGFVPGSGGGSGYGGRPQPQPAYGFQPGMGRP 120
F+ EPSAY DEALN EYSSY+RPKPRP F P SGGG G +P P YG + G GR
Sbjct: 61 FTQIHEPSAYGDEALNTEYSSYSRPKPRPAFRPDSGGGGHVQGE-RPNPGYGSESGYGR- 118
Query: 121 EPYGSGRPESEYASG--------YAKRPDSQEYGSGYGKRPESE-EYGSG--------YG 163
+PESEY SG Y +RP+ Q YGSGYG R E+E EYGSG YG
Sbjct: 119 ------KPESEYGSGYGGQTEVEYGRRPE-QSYGSGYGGRTETESEYGSGGGGRTEVEYG 171
Query: 164 RKPDSESGESGFGGRTESEYGGS-AYGRKPEYESGYGQKPEYESGYGGKPGYES-GYGSK 221
R+P+S G SG+GGR+ESEY +YGR E E GY +KP Y + GY YG
Sbjct: 172 RRPESGLG-SGYGGRSESEYERKPSYGRSEEQEEGY-RKPSYGRSEEQEEGYRKPSYGRS 229
Query: 222 PEFESGYGRKPEY 234
E E GY RKP Y
Sbjct: 230 EEQEEGY-RKPSY 241
>sp|A9KNW4|IF2_CLOPH Translation initiation factor IF-2 OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=infB PE=3
SV=1
Length = 1131
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 101 YGGRPQPQPAYGFQP------GMGRPE---PYGSGRPESEYASGYAKRPDSQ-EYGS--- 147
YG RPQ Q +YG +P G RP+ YG RP+ + Y RP Q YG
Sbjct: 299 YGDRPQGQGSYGDRPQGQGSYGDRRPQGQGSYGDRRPQGQ--GSYGDRPQGQGSYGDRRP 356
Query: 148 ----GYGKRPESE-EYGSGYGRKPDSESGESGFGGRTESEYGGSAYGRKPEYESGYG-QK 201
YG RP+ + YG R+P G+ +G R G +YG +P+ + +G ++
Sbjct: 357 QGQGSYGDRPQGQGNYGD---RRP---GGQGSYGDRRPQ--GQGSYGDRPQGQGNFGDRR 408
Query: 202 PEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYG 239
P+ + GYGG+P + YG +P+ + GY + + + +G
Sbjct: 409 PQGQGGYGGRPQGQGSYGGRPQGQGGYAGRSQGQGSFG 446
>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1
PE=1 SV=1
Length = 875
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 27/68 (39%)
Query: 185 GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMI 244
S Y KP Y Y KP Y Y KP Y Y +KP + S Y KP Y Y +
Sbjct: 598 PSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYPSTYKAKPSYPPTYKPKISY 657
Query: 245 GPAMGVSP 252
P P
Sbjct: 658 PPTYKAKP 665
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 26/78 (33%)
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMM 243
Y KP Y Y KP Y Y KP Y Y +KP + Y KP Y Y
Sbjct: 277 AKPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPS 336
Query: 244 IGPAMGVSPMNLAMGVNP 261
P P A P
Sbjct: 337 YPPTYKAKPTYKAKPTYP 354
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESG------YGRKPEYESG 237
Y KP Y S Y KP Y Y KP Y Y +KP +++ Y KP Y
Sbjct: 343 AKPTYKAKPTYPSTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPSYPPTYKAKPSYPPT 402
Query: 238 YGISMMIGPAMGVSPMNLAMGVNPIMSPGMAANRSMNLGMGVSQSMNPGMVA 289
Y P P A P A S S P A
Sbjct: 403 YKAKPSYPPTYKAKPTYKAKPTYPST---YKAKPSYPPSYKAKPSYPPTYKA 451
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGY------ESGYGSKPEFESGYGRKPEYESG 237
Y KP Y Y KP Y Y KP Y + Y +KP + S Y KP Y
Sbjct: 379 AKPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSYPPS 438
Query: 238 YGISMMIGPAMGVSPMNLAMGVNP 261
Y P P A P
Sbjct: 439 YKAKPSYPPTYKAKPTYKAKPTYP 462
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYE------SGYGSKPEFESGYGRKPEYESGYGIS 241
Y KP Y Y KP Y Y KP Y+ S Y +KP + Y KP Y Y
Sbjct: 661 YKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTNPSTYKAKPSYPPTYKAKPSYPPTYKAK 720
Query: 242 MMIGPAMGVSPMNLAMGVNP 261
P P A P
Sbjct: 721 PSYPPTYKAKPTYKAKPTYP 740
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGY------ESGYGSKPEFESGYGRKPEYESG 237
Y KP Y S Y KP Y Y KP Y + Y +KP + S Y KP Y +
Sbjct: 415 AKPTYKAKPTYPSTYKAKPSYPPSYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSYPAS 474
Query: 238 YGISMMIGP 246
Y P
Sbjct: 475 YKAKPSYPP 483
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESG 237
Y KP S Y KP Y Y KP Y Y +KP + Y KP Y++
Sbjct: 683 AKPTYKAKPTNPSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAK 736
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 21/59 (35%)
Query: 194 YESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPAMGVSP 252
Y Y KP Y Y KP Y Y +K + S Y KP Y Y P P
Sbjct: 137 YPPTYKPKPSYPPTYKPKPSYPPSYKTKKTYPSSYKAKPSYPPTYKAKPSYPPTYKAKP 195
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 24/69 (34%)
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMM 243
Y KP Y Y KP Y Y KP Y Y SK + S Y K Y Y +
Sbjct: 745 AKPTYKAKPTYPPTYKAKPSYPPTYKPKPSYPPTYKSKSIYPSSYKPKKTYPPTYKPKLT 804
Query: 244 IGPAMGVSP 252
P P
Sbjct: 805 YPPTYKPKP 813
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein OS=Mytilus galloprovincialis GN=FP1
PE=2 SV=1
Length = 751
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 27/65 (41%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPA 247
Y KP Y + Y KP Y S Y KP Y Y +KP + Y KP Y S Y P
Sbjct: 269 YKAKPSYPTSYRAKPSYPSTYKAKPSYPPTYKAKPSYPPTYKAKPTYPSTYKAKPSYPPT 328
Query: 248 MGVSP 252
P
Sbjct: 329 YKAKP 333
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 33/106 (31%), Gaps = 1/106 (0%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPA 247
Y KP Y Y KP Y Y KP Y Y +KP + Y KP Y S Y P
Sbjct: 449 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKTKPSYPRTYKAKPSYSSTYKAKPSYPPT 508
Query: 248 MGVSP-MNLAMGVNPIMSPGMAANRSMNLGMGVSQSMNPGMVASRS 292
P P P A S S P A S
Sbjct: 509 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPS 554
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 33/106 (31%), Gaps = 1/106 (0%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPA 247
Y KP Y Y KP Y Y KP Y S Y +KP + Y KP Y Y P
Sbjct: 469 YKAKPSYPPTYKTKPSYPRTYKAKPSYSSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPT 528
Query: 248 MGVSP-MNLAMGVNPIMSPGMAANRSMNLGMGVSQSMNPGMVASRS 292
P P P A S S P A S
Sbjct: 529 YKAKPSYPPTYKAKPSYPPTYKAKPSYPQTYKAKSSYPPTYKAKPS 574
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 28/67 (41%)
Query: 186 SAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIG 245
++Y KP Y S Y KP Y Y KP Y Y +KP + S Y KP Y Y
Sbjct: 277 TSYRAKPSYPSTYKAKPSYPPTYKAKPSYPPTYKAKPTYPSTYKAKPSYPPTYKAKPSYP 336
Query: 246 PAMGVSP 252
P P
Sbjct: 337 PTYKAKP 343
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 124 GSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSESGESGFGGRTESEY 183
S +P+ Y S Y + Y Y +P Y + Y KP S S + +
Sbjct: 247 SSYKPKKTYPSTYKPK---ISYPPTYKAKPS---YPTSYRAKP---SYPSTYKAKPS--- 294
Query: 184 GGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMM 243
Y KP Y Y KP Y S Y KP Y Y +KP + Y KP Y Y
Sbjct: 295 YPPTYKAKPSYPPTYKAKPTYPSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPSYKPKTT 354
Query: 244 IGPAM 248
P+
Sbjct: 355 YPPSY 359
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPA 247
Y KP Y Y KP Y Y KP Y Y +KP + Y KP Y Y P
Sbjct: 509 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPQTYKAKSSYPPT 568
Query: 248 MGVSP-MNLAMGVNPIMSPGMAANRSMNLGMGVSQSMNPGMVASRS 292
P P P A S S P A S
Sbjct: 569 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPS 614
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 178 RTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESG 237
+T+ Y + Y KP Y S Y KP Y Y KP Y Y +KP + Y KP Y
Sbjct: 480 KTKPSYPRT-YKAKPSYSSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPT 538
Query: 238 YGISMMIGPAMGVSP 252
Y P P
Sbjct: 539 YKAKPSYPPTYKAKP 553
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPA 247
Y KP Y Y KP Y Y KP Y Y +KP + Y KP Y + Y + P+
Sbjct: 609 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPATYPSTYKAKPS 668
Query: 248 MGVS 251
+
Sbjct: 669 YPPT 672
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 25/70 (35%)
Query: 188 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGPA 247
Y KP Y Y KP Y Y KP Y Y +KP + Y KP Y Y P
Sbjct: 589 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPT 648
Query: 248 MGVSPMNLAM 257
P A
Sbjct: 649 YKAKPSYPAT 658
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 178 RTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESG 237
+ +S Y + Y KP Y Y KP Y Y KP Y Y +KP + Y KP Y
Sbjct: 560 KAKSSYPPT-YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPT 618
Query: 238 YGISMMIGPAMGVSP 252
Y P P
Sbjct: 619 YKAKPSYPPTYKAKP 633
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 35/129 (27%), Gaps = 11/129 (8%)
Query: 186 SAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGS--------KPE--FESGYGRKPEYE 235
S Y KP Y Y KP Y Y KP Y Y KP+ + Y KP Y
Sbjct: 317 STYKAKPSYPPTYKAKPSYPPTYKAKPSYPPSYKPKTTYPPSYKPKISYPPTYKAKPSYP 376
Query: 236 SGYGISMMIGPAMGVSPMNL-AMGVNPIMSPGMAANRSMNLGMGVSQSMNPGMVASRSTS 294
Y P P L P P A S P A S
Sbjct: 377 PIYKAKPSYPPTYKAKPSYLPTYKAKPSYPPTYKAKPRYPTTYKAKPSYPPTYKAKPSYP 436
Query: 295 RGMGGNLNL 303
L+
Sbjct: 437 PTYKAKLSY 445
>sp|Q12816|TROP_HUMAN Trophinin OS=Homo sapiens GN=TRO PE=1 SV=3
Length = 1431
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 173 SGFGGR--TESEYGGSA-----YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFE 225
+GFGG T +GGS+ +G + P +G+GG + +GS
Sbjct: 927 TGFGGTLSTSVSFGGSSSTSANFGGTLSTSICFDGSPSTGAGFGGALNTSASFGSVLNTS 986
Query: 226 SGYGRKPEYESGYGISMMIGPAMGVSP-MNLAMGVNPIMSPGMAANRSMNLGMGVSQSMN 284
+G+G + +G ++ G SP +++ G + G S N G + S +
Sbjct: 987 TGFGGAMSTSADFGGTLSTSVCFGGSPGTSVSFGSALNTNAGYGGAVSTNTDFGGTLSTS 1046
Query: 285 PGMVASRSTSRGMGGNLNLNTKAGTAVVRS 314
S STS G GG LN N G AV S
Sbjct: 1047 VCFGGSPSTSAGFGGALNTNASFGCAVSTS 1076
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 173 SGFGG--RTESEYGG-----SAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFE 225
+GFGG T + +G + +G + +G +GG PG +GS
Sbjct: 967 AGFGGALNTSASFGSVLNTSTGFGGAMSTSADFGGTLSTSVCFGGSPGTSVSFGSALNTN 1026
Query: 226 SGYGRKPEYESGYGISMMIGPAMGVSPMNLA---MGVNPIMSPGMAANRSMNLGMGVSQS 282
+GYG + +G ++ G SP A +N S G A + S + VS S
Sbjct: 1027 AGYGGAVSTNTDFGGTLSTSVCFGGSPSTSAGFGGALNTNASFGCAVSTSASFSGAVSTS 1086
Query: 283 --------MNPGMVASRSTSRGMGGNLN 302
NPG + STS G GG L+
Sbjct: 1087 ACFSGAPITNPGFGGAFSTSAGFGGALS 1114
>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
Length = 872
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 63/186 (33%), Gaps = 20/186 (10%)
Query: 112 GFQPGMGRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRK---PDS 168
+QP P S +P+ Y Y + Y Y +P Y + Y RK P +
Sbjct: 681 SYQPKKTYP---PSYKPKKTYPPTYKPK---ISYPPTYKTKPS---YPASYKRKTSYPPT 731
Query: 169 ESGESGFGG--RTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFES 226
+ + + + Y + Y KP Y S Y K Y Y KP Y S Y K +
Sbjct: 732 YKPKISYPSTYKAKPSYPPT-YKPKPSYASSYKPKIRYPPTYKPKPSYASSYKPKIRYPP 790
Query: 227 GYGRKPEYESGYGISMMIGPAMGVSP-----MNLAMGVNPIMSPGMAANRSMNLGMGVSQ 281
Y KP Y S Y + P P + P P ++ + +
Sbjct: 791 TYKPKPSYASSYKPKIRYPPTYKPKPSYASSYKPKITYPPTYKPKISYPPTYKPKITYPP 850
Query: 282 SMNPGM 287
+ P +
Sbjct: 851 TYKPKI 856
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 187 AYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGISMMIGP 246
Y KP Y S Y K Y Y KP Y S Y K + Y KP Y S Y + P
Sbjct: 771 TYKPKPSYASSYKPKIRYPPTYKPKPSYASSYKPKIRYPPTYKPKPSYASSYKPKITYPP 830
Query: 247 AMGVSPMNLAMGVNPIMSPGMAANRSMNLGMGVSQSMNPGM 287
+ P P + + + + P +
Sbjct: 831 T-----YKPKISYPPTYKPKITYPPTYKPKISYPPAYKPKI 866
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 187 AYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRK 231
Y RKP Y + Y QKP Y Y K Y + Y SK + Y K
Sbjct: 491 TYKRKPSYPTPYKQKPSYPPIYKSKSSYPTSYKSKKTYPPTYKPK 535
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,339,477
Number of Sequences: 539616
Number of extensions: 9664949
Number of successful extensions: 31573
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 1001
Number of HSP's that attempted gapping in prelim test: 21565
Number of HSP's gapped (non-prelim): 5071
length of query: 369
length of database: 191,569,459
effective HSP length: 119
effective length of query: 250
effective length of database: 127,355,155
effective search space: 31838788750
effective search space used: 31838788750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)