Query 017568
Match_columns 369
No_of_seqs 86 out of 88
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 09:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0921 Dosage compensation co 76.1 15 0.00032 42.3 9.3 7 172-178 1205-1211(1282)
2 PF08035 Op_neuropeptide: Opio 31.0 28 0.0006 24.8 1.1 21 325-345 2-24 (31)
3 COG3059 Predicted membrane pro 27.1 60 0.0013 30.7 2.9 24 339-365 155-178 (182)
4 KOG3875 Peroxisomal biogenesis 20.7 2.9E+02 0.0063 28.7 6.5 16 265-280 139-154 (362)
5 PF04224 DUF417: Protein of un 17.7 1.2E+02 0.0026 28.5 2.9 24 338-364 151-174 (175)
6 KOG1316 Argininosuccinate lyas 15.1 94 0.002 32.7 1.7 45 313-357 291-352 (464)
7 TIGR02017 hutG_amidohyd N-form 14.1 87 0.0019 30.0 1.1 19 16-35 194-212 (263)
8 PRK13896 cobyrinic acid a,c-di 12.7 92 0.002 32.2 0.9 30 333-362 104-134 (433)
9 PF07054 Pericardin_rpt: Peric 10.7 3.9E+02 0.0086 19.5 3.3 12 108-119 18-29 (34)
10 PLN03021 Low-temperature-induc 10.5 2.7E+02 0.0058 30.5 3.4 59 8-76 63-147 (619)
No 1
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=76.10 E-value=15 Score=42.34 Aligned_cols=7 Identities=43% Similarity=1.203 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 017568 172 ESGFGGR 178 (369)
Q Consensus 172 gsGYGgr 178 (369)
++|||+.
T Consensus 1205 sGGYGgs 1211 (1282)
T KOG0921|consen 1205 SGGYGGS 1211 (1282)
T ss_pred CCCCCCC
Confidence 3455544
No 2
>PF08035 Op_neuropeptide: Opioids neuropeptide; InterPro: IPR013532 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. This region corresponds to the conserved YGG motif that is found in a wide variety of opioid neuropeptides such as enkephalin
Probab=31.01 E-value=28 Score=24.76 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=17.7
Q ss_pred cccccc--cCcCCceehhhHHHH
Q 017568 325 GGLMTK--KGIRSPVVMVMRDVV 345 (369)
Q Consensus 325 ~~~~~~--~~~~~~~~~~~~~~~ 345 (369)
||+|+. .-...|.|.+.|+|+
T Consensus 2 GGFM~s~~e~s~~PLvtlfkn~i 24 (31)
T PF08035_consen 2 GGFMKSWDERSHKPLVTLFKNVI 24 (31)
T ss_pred CccccccccccCCchHHHHHHHH
Confidence 789988 666789999999985
No 3
>COG3059 Predicted membrane protein [Function unknown]
Probab=27.07 E-value=60 Score=30.70 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhhhh
Q 017568 339 MVMRDVVMMMNIAAGLMSMAMDARRRY 365 (369)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
.|..|+.|+ |.+||.||-||+|-+
T Consensus 155 lvlKDilml---Agal~v~~~~a~r~l 178 (182)
T COG3059 155 LVLKDILML---AGALMVAADDANRIL 178 (182)
T ss_pred hhHHHHHHH---HHHHHHHHhhHHHhh
Confidence 577898874 789999999999865
No 4
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.67 E-value=2.9e+02 Score=28.70 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=8.3
Q ss_pred cccccccccccccccc
Q 017568 265 PGMAANRSMNLGMGVS 280 (369)
Q Consensus 265 ~~~~~~~~~~~~~~~~ 280 (369)
-=||+--|.+.=++|+
T Consensus 139 T~~A~~~SFravi~Va 154 (362)
T KOG3875|consen 139 TFMAVHNSFRAVISVA 154 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544544
No 5
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=17.74 E-value=1.2e+02 Score=28.51 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHhHhhh
Q 017568 338 VMVMRDVVMMMNIAAGLMSMAMDARRR 364 (369)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (369)
-.|+.|+||+ |++|+.|+-++||-
T Consensus 151 ~fllKDivlL---a~~l~~~~~~~~r~ 174 (175)
T PF04224_consen 151 RFLLKDIVLL---AASLVLLSDSAKRY 174 (175)
T ss_pred chHHHHHHHH---HHHHHHHHHHHHhh
Confidence 4789999985 88999999888873
No 6
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=15.10 E-value=94 Score=32.75 Aligned_cols=45 Identities=42% Similarity=0.609 Sum_probs=34.2
Q ss_pred hhccccccc--ccc----cccccccCcCC-----------ceehhhHHHHHHHHHHHHHHHH
Q 017568 313 RSMENLRGS--RVM----GGLMTKKGIRS-----------PVVMVMRDVVMMMNIAAGLMSM 357 (369)
Q Consensus 313 ~~~~~~~~~--~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 357 (369)
.|||-|||. ||. |=|||-|||-| |+.-+..-|.-++.|++|+++-
T Consensus 291 DslELlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDKep~Fds~~tv~~~l~v~tgv~st 352 (464)
T KOG1316|consen 291 DSLELLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDKEPLFDSSKTVSDSLQVATGVIST 352 (464)
T ss_pred CHHHHhccccceehhhhHHHHHHhcCCccccccchhhhhhHHHhhHHHHHHHHHHHHHHhhh
Confidence 578888884 554 45789999965 6777777777889999998763
No 7
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=14.07 E-value=87 Score=30.04 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=15.3
Q ss_pred CCCCCCCCCCcccccccCCC
Q 017568 16 DYDPTPYDGGYDITLTYGRP 35 (369)
Q Consensus 16 eydPtPYgGGYDi~~tYG~p 35 (369)
-=+-.||-||| |+-+||+|
T Consensus 194 v~~N~Py~Gg~-itr~yg~p 212 (263)
T TIGR02017 194 HVLNGRFKGGW-ITRHYGQP 212 (263)
T ss_pred EEeCCCCCCcc-eecccCCC
Confidence 33567999999 57799998
No 8
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=12.68 E-value=92 Score=32.20 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=24.8
Q ss_pred cCCceehhhHHHHHHHHHHHHHHHH-HHhHh
Q 017568 333 IRSPVVMVMRDVVMMMNIAAGLMSM-AMDAR 362 (369)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 362 (369)
+..|||+|.+.-.+..|||+-|..+ ..+.+
T Consensus 104 l~~PviLVv~~~~g~~s~aa~l~g~~~~~~~ 134 (433)
T PRK13896 104 LDLPVVLVVDAKAGMESVAATALGFRAYADR 134 (433)
T ss_pred HCCCEEEEEcCcccHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999998886 55543
No 9
>PF07054 Pericardin_rpt: Pericardin like repeat; InterPro: IPR009765 This entry represents a repeated sequence of around 34 residues in length, which is found in multiple copies in Drosophila pericardin and other extracellular matrix proteins [, ].
Probab=10.74 E-value=3.9e+02 Score=19.49 Aligned_cols=12 Identities=67% Similarity=1.306 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q 017568 108 QPAYGFQPGMGR 119 (369)
Q Consensus 108 ~P~Yg~qpGYGg 119 (369)
+|.|+.||+-|+
T Consensus 18 QpGYg~QPGvGg 29 (34)
T PF07054_consen 18 QPGYGTQPGVGG 29 (34)
T ss_pred CCccccCCccCC
Confidence 444444444443
No 10
>PLN03021 Low-temperature-induced protein; Provisional
Probab=10.47 E-value=2.7e+02 Score=30.50 Aligned_cols=59 Identities=29% Similarity=0.490 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCC-------------------------CCCCCCCccCCCC-CCCCCCCCCCCCC
Q 017568 8 DDDVTDFDDYDPTPYDGGYDITLTYGRP-------------------------LPPSDETCYPSSS-ASDGDFDYARPKF 61 (369)
Q Consensus 8 ~~~~~~fdeydPtPYgGGYDi~~tYG~p-------------------------lpps~etcyP~Ss-asd~d~sYdRP~y 61 (369)
++++|++|+-||. .-|.| +|+++|+.=|-.- ---...+|-.|.=
T Consensus 63 ~~edde~de~~~e----------~h~apv~e~s~vrg~~tgkp~sl~h~ge~nvpa~eeivppgtk~fpvvss~~tkp~e 132 (619)
T PLN03021 63 EDDDDEYDEQDPE----------VHGAPVYESSAVRGGVTGKPKSLSHAGETNVPASEEIVPPGTKVFPVVSSDHTKPIE 132 (619)
T ss_pred ccccccccccchh----------hcCCcccccccccccccCCcccccCccccCCCCcccccCCCCcccceecccccCcCC
Q ss_pred CCCCCCCccchhhhh
Q 017568 62 SSHSEPSAYADEALN 76 (369)
Q Consensus 62 ~S~sEPSaY~deal~ 76 (369)
+-..+-..|+++|++
T Consensus 133 pv~~~~~~yghea~~ 147 (619)
T PLN03021 133 PVSLQDTSYGHEALA 147 (619)
T ss_pred ccccccccccccccc
Done!