Query 017568
Match_columns 369
No_of_seqs 86 out of 88
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 16:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ep8_B Urease subunit beta; al 7.4 1.3E+02 0.0044 25.1 0.9 42 282-327 44-93 (101)
2 2di9_A Filamin-B; beta-sandwic 6.8 2.2E+02 0.0076 22.9 2.0 21 24-44 3-24 (131)
3 1kdl_A YOPD protein; yersinia, 6.4 2.1E+02 0.0071 18.9 1.3 10 340-349 3-12 (26)
4 1xg2_B Pectinesterase inhibito 5.1 3.3E+02 0.011 21.2 2.1 26 332-357 124-149 (153)
5 2k9p_A Pheromone alpha factor 4.8 5.6E+02 0.019 20.0 3.2 29 327-357 41-69 (80)
6 2vjq_A Formyl-coenzyme A trans 4.6 9.1E+02 0.031 23.6 5.3 82 274-366 106-191 (428)
7 4ac7_B Urease subunit beta; hy 4.5 2.4E+02 0.0082 24.3 0.9 43 282-328 50-100 (126)
8 4ubp_B Protein (urease (chain 4.5 2.4E+02 0.0082 24.3 0.9 43 282-328 50-100 (126)
9 2cj4_A Invertase inhibitor; pr 4.2 5.6E+02 0.019 20.0 2.8 26 332-357 123-148 (150)
10 1x91_A Invertase/pectin methyl 4.1 4.1E+02 0.014 20.8 2.0 26 332-357 124-149 (153)
No 1
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=7.38 E-value=1.3e+02 Score=25.13 Aligned_cols=42 Identities=36% Similarity=0.557 Sum_probs=31.1
Q ss_pred cCCCcceeeccccCCCCccccccccccchhh------h--hccccccccccccc
Q 017568 282 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVV------R--SMENLRGSRVMGGL 327 (369)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~ 327 (369)
-.||...-.|...+|| .||-.|||||- | .+-.+.|.|+.=|+
T Consensus 44 E~N~aL~FDR~~A~G~----RLdIpAGTavRFEPG~~r~V~LV~~~G~r~v~Gf 93 (101)
T 4ep8_B 44 EVNPALKFDRQQAAGY----RLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGF 93 (101)
T ss_dssp GSCTTEESCTTTTTTE----EECSSTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred HcCcceeecHhhccCc----eecccCCCeEeeCCCCeEEEEEEEccCceEEEcC
Confidence 3689999999999987 67889999973 1 23456777766554
No 2
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=6.81 E-value=2.2e+02 Score=22.87 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=13.6
Q ss_pred CCccccccc-CCCCCCCCCCcc
Q 017568 24 GGYDITLTY-GRPLPPSDETCY 44 (369)
Q Consensus 24 GGYDi~~tY-G~plpps~etcy 44 (369)
|||.|.++| |.+|+-|.-+|.
T Consensus 3 ~~~~i~v~~~g~~v~gsPf~v~ 24 (131)
T 2di9_A 3 SGSSGDVTYDGHPVPGSPYTVE 24 (131)
T ss_dssp CCCCCCCCCCCCCCSSCTTSCS
T ss_pred CcEEEEEEECCEECCCCCEEEE
Confidence 667777776 566666666554
No 3
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.39 E-value=2.1e+02 Score=18.87 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=8.3
Q ss_pred hhHHHHHHHH
Q 017568 340 VMRDVVMMMN 349 (369)
Q Consensus 340 ~~~~~~~~~~ 349 (369)
.|+||+-+|.
T Consensus 3 fMkDvlql~q 12 (26)
T 1kdl_A 3 FMKDVLRLIE 12 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899998875
No 4
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=5.13 E-value=3.3e+02 Score=21.22 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=21.3
Q ss_pred CcCCceehhhHHHHHHHHHHHHHHHH
Q 017568 332 GIRSPVVMVMRDVVMMMNIAAGLMSM 357 (369)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (369)
.+++||.-.+.+|..|.+|+..|+.+
T Consensus 124 ~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1xg2_B 124 NIPTQLHQADLKLEDLCDIVLVISNL 149 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999998888765
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=4.78 E-value=5.6e+02 Score=20.03 Aligned_cols=29 Identities=10% Similarity=0.440 Sum_probs=20.8
Q ss_pred cccccCcCCceehhhHHHHHHHHHHHHHHHH
Q 017568 327 LMTKKGIRSPVVMVMRDVVMMMNIAAGLMSM 357 (369)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (369)
+.|| .-|+|| .++.-+.+++||.-.++..
T Consensus 41 lltk-krrspi-F~lN~~~L~l~iirs~l~~ 69 (80)
T 2k9p_A 41 ITSR-SRKTPI-FIINQVSLFLIILHSALYF 69 (80)
T ss_dssp HHTC-CSCCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-cccChh-hHHHHHHHHHHHHHHHHHH
Confidence 5677 468887 6777888888887766543
No 6
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Probab=4.63 E-value=9.1e+02 Score=23.61 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=51.6
Q ss_pred cccccccccCCCcceeeccccCCCCccccccccccchhhhhcccccccccccccccccCcC--Cce--ehhhHHHHHHHH
Q 017568 274 NLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIR--SPV--VMVMRDVVMMMN 349 (369)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~ 349 (369)
-|+--.-...||..|-.+-|--|- |-+|-+..+=..++.. +.|||.-.|-. .|+ ...+-|++--|.
T Consensus 106 GL~ye~L~~~NP~LIy~sisGfG~-GP~~a~~pg~D~~~qA---------~sG~~~~~G~~~~~P~~~~~~i~D~~~G~~ 175 (428)
T 2vjq_A 106 GFTWEYIQELNPRVILASVKGYAE-GHANEHLKVYENVAQC---------SGGAAATTGFWDGPPTVSGAALGDSNSGMH 175 (428)
T ss_dssp TCCHHHHHHHCTTCEEEEEESSCT-TSTTTTSCCCHHHHHH---------HTTTGGGSSCTTSCCCCCSSCTTHHHHHHH
T ss_pred CCCHHHHHhhCCCeEEEEeecCCC-CCCcCCCCCcHHHHHH---------HhChHhhcCCCCCCCccCCchHHHHHHHHH
Confidence 344445567899999999999988 8764444444444443 45666654432 243 345678887777
Q ss_pred HHHHHHHHHHhHhhhhc
Q 017568 350 IAAGLMSMAMDARRRYG 366 (369)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (369)
.|.+++. |+-.|+|-|
T Consensus 176 aa~gila-AL~~R~rtG 191 (428)
T 2vjq_A 176 LMIGILA-ALEIRHKTG 191 (428)
T ss_dssp HHHHHHH-HHHHHHHHS
T ss_pred HHHHHHH-HHHHHHhcC
Confidence 7777665 555666544
No 7
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=4.49 E-value=2.4e+02 Score=24.28 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred cCCCcceeeccccCCCCccccccccccchhhh--------hcccccccccccccc
Q 017568 282 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGLM 328 (369)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 328 (369)
-.||...-.|...+|| .||-.|||||-- .+-.|.|.|+.=|+-
T Consensus 50 E~N~aL~FDR~~A~G~----RLdIpAGTavRFEPG~~k~V~LV~~~G~r~v~G~~ 100 (126)
T 4ac7_B 50 EVNKELLFDRAEGIGR----RLNIPSGTAARFEPGEEMEVELTELGGNREVFGIS 100 (126)
T ss_dssp GSCTTEESCGGGGTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECSTT
T ss_pred hcCchhhccHhhhcCc----cccccCCCeEeeCCCCeEEEEEEEccCCeEEeCcC
Confidence 4699999999999987 678899999731 344577888765553
No 8
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=4.49 E-value=2.4e+02 Score=24.28 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred cCCCcceeeccccCCCCccccccccccchhhh--------hcccccccccccccc
Q 017568 282 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVVR--------SMENLRGSRVMGGLM 328 (369)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 328 (369)
-.||...-.|...+|| .||-.|||||-- .+-.|.|.|+.=|+-
T Consensus 50 E~N~aL~FDR~~A~G~----RLdIpAGTavRFEPG~~k~V~LV~~~G~r~v~G~~ 100 (126)
T 4ubp_B 50 EVNKELLFDRAEGIGR----RLNIPSGTAARFEPGEEMEVELTELGGNREVFGIS 100 (126)
T ss_dssp GSCTTEESCGGGGTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECSTT
T ss_pred hcCchhhccHhhhcCc----cccccCCCeEeeCCCCeEEEEEEEccCCeEEeCcC
Confidence 4699999999999987 678899999731 344577888765553
No 9
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=4.18 E-value=5.6e+02 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=20.4
Q ss_pred CcCCceehhhHHHHHHHHHHHHHHHH
Q 017568 332 GIRSPVVMVMRDVVMMMNIAAGLMSM 357 (369)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (369)
+.++||.-..++|..|..|+..|..+
T Consensus 123 ~~~~pl~~~~~~~~~l~s~aLaii~~ 148 (150)
T 2cj4_A 123 GSKSPFSALNIAVHELSDVGRAIVRN 148 (150)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 45789877788888889888887754
No 10
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=4.14 E-value=4.1e+02 Score=20.81 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=20.9
Q ss_pred CcCCceehhhHHHHHHHHHHHHHHHH
Q 017568 332 GIRSPVVMVMRDVVMMMNIAAGLMSM 357 (369)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (369)
.+++||.-.+.+|..|..|+..|+.+
T Consensus 124 ~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1x91_A 124 SVDSSVVNNSKTIKNLCGIALVISNM 149 (153)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 57888888888888888888877754
Done!