Query 017568
Match_columns 369
No_of_seqs 86 out of 88
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 16:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017568.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017568hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cj4a1 a.29.6.1 (A:4-150) Inv 12.2 59 0.0043 23.8 2.6 28 331-358 119-146 (147)
2 d2af4c1 c.77.1.5 (C:2-333) Pho 7.7 88 0.0064 27.2 2.3 55 296-352 261-324 (332)
3 d2vjma1 c.123.1.1 (A:2-428) Fo 7.5 2.2E+02 0.016 23.9 4.8 84 272-366 103-190 (427)
4 d1x91a_ a.29.6.1 (A:) Pectin m 6.4 1.1E+02 0.0081 22.1 2.0 32 326-357 114-145 (149)
5 d1xk7a1 c.123.1.1 (A:4-405) Cr 5.8 2.9E+02 0.021 23.0 4.6 82 275-366 103-188 (402)
6 d2nqca1 b.1.18.10 (A:2482-2578 5.6 63 0.0046 22.8 0.1 22 23-44 67-90 (97)
7 d3c0na1 d.169.1.2 (A:2-84) Pro 5.3 48 0.0035 25.0 -0.8 13 36-48 67-79 (83)
8 d4ubpb_ b.85.3.1 (B:) Urease, 5.1 96 0.007 24.6 0.9 42 282-327 46-95 (122)
9 d1r5ja_ c.77.1.5 (A:) Phosphot 4.8 1.3E+02 0.0096 25.8 1.7 53 297-351 261-322 (329)
10 d1by5a_ f.4.3.3 (A:) Ferric hy 4.5 89 0.0065 25.1 0.3 17 294-310 125-141 (697)
No 1
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=12.24 E-value=59 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.4
Q ss_pred cCcCCceehhhHHHHHHHHHHHHHHHHH
Q 017568 331 KGIRSPVVMVMRDVVMMMNIAAGLMSMA 358 (369)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (369)
+++.+|+.-..+.|..|.+||..+..+.
T Consensus 119 ~~~~spl~~~~~~~~~l~~ial~i~~~L 146 (147)
T d2cj4a1 119 KGSKSPFSALNIAVHELSDVGRAIVRNL 146 (147)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999888999999999998887654
No 2
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]}
Probab=7.75 E-value=88 Score=27.17 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=39.1
Q ss_pred CCCccccc----cccccchhhhhcccccccccccccccccCcCCceehhhH-----HHHHHHHHHH
Q 017568 296 GMGGNLNL----NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR-----DVVMMMNIAA 352 (369)
Q Consensus 296 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 352 (369)
-+.|+-|+ |-.+|......+..|-+..+.|-++. |.+.||+++-| |+|.+.-||+
T Consensus 261 ~v~G~AnvLIfPnl~agNi~yK~l~~~~~a~~~Gpil~--G~~~Pv~~~sR~~s~~~i~~~~alaa 324 (332)
T d2af4c1 261 PVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQ--GLAKPINDLSRGCSDEDIVGAVAITC 324 (332)
T ss_dssp SSTTSCCEEECSSHHHHHHHHHHHHHTSCCEEEEEEEE--SBSSCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEeCChHHhHHHHHHHHHhcCCeEEcchhh--cCCCCEEECCCCCCHHHHHHHHHHHH
Confidence 44566654 55677778888888888888886653 88999999876 5555544443
No 3
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}
Probab=7.46 E-value=2.2e+02 Score=23.90 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=53.6
Q ss_pred cccccccccccCCCcceeeccccCCCCccccccccccchhhhhcccccccccccccccccCcC--Cce--ehhhHHHHHH
Q 017568 272 SMNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIR--SPV--VMVMRDVVMM 347 (369)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~ 347 (369)
.+.|+.-.-+..||.+|-...|--|-.|-. -+..+-..|+.. ++|+|...|.. .|| .+.+-|.+--
T Consensus 103 rlGL~~~~l~~~NP~LI~~sisgfG~~GP~-~~~~~~d~~~qA---------~sG~~~~~G~~~~~P~~~~~~~~D~~ag 172 (427)
T d2vjma1 103 RMGFTWEYIQELNPRVILASVKGYAEGHAN-EHLKVYENVAQC---------SGGAAATTGFWDGPPTVSGAALGDSNSG 172 (427)
T ss_dssp HTTCCHHHHHHHCTTCEEEEEESSCTTSTT-TTCCCCHHHHHH---------HTTTTTTSSCTTSCCCCCSSCTTTHHHH
T ss_pred HcCCCchhhhhhCCccceeeeecccccccc-cccccccccccc---------cccchhhccCCCCCCcccccchhhhhcc
Confidence 345566666789999999999999988764 244444444443 25666555532 243 3456688877
Q ss_pred HHHHHHHHHHHHhHhhhhc
Q 017568 348 MNIAAGLMSMAMDARRRYG 366 (369)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~ 366 (369)
+..|.++++ |+-+|+|-|
T Consensus 173 ~~aa~~ila-AL~~R~~TG 190 (427)
T d2vjma1 173 MHLMIGILA-ALEIRHKTG 190 (427)
T ss_dssp HHHHHHHHH-HHHHHHHHS
T ss_pred cccccchhh-hHHHHhccC
Confidence 777777664 555666654
No 4
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.40 E-value=1.1e+02 Score=22.10 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=24.2
Q ss_pred ccccccCcCCceehhhHHHHHHHHHHHHHHHH
Q 017568 326 GLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSM 357 (369)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (369)
++-..+++++||+-..++|.-|.+|+..|..+
T Consensus 114 ~f~~~~~~~s~l~~~~~~~~~l~~ialai~~~ 145 (149)
T d1x91a_ 114 DVKRLRSVDSSVVNNSKTIKNLCGIALVISNM 145 (149)
T ss_dssp HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344567889888888888999998887765
No 5
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Probab=5.77 E-value=2.9e+02 Score=23.02 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=47.2
Q ss_pred ccccccccCCCcceeeccccCCCCccccccccccc-hhhhhcccccccccccccccccCcCC---ceehhhHHHHHHHHH
Q 017568 275 LGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGT-AVVRSMENLRGSRVMGGLMTKKGIRS---PVVMVMRDVVMMMNI 350 (369)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 350 (369)
|+.-.-+.+||.+|-..-|.-|-.|.=-...+++. .++.+ +.|+|.-.|-.. ++.+.+-|.+.-|..
T Consensus 103 l~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA---------~sG~~~~~G~~~~p~~~~~~~~d~~~g~~a 173 (402)
T d1xk7a1 103 ITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQA---------FSGYLIQNGDVDQPMPAFPYTADYFSGLTA 173 (402)
T ss_dssp CCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHH---------HHTSGGGSEETTEECCCTTTHHHHHHHHHH
T ss_pred ccccchhhccccccceeeecccCCcCccccCCCCccccccc---------ccchhhhccccccccccccccccccchhhh
Confidence 33334568999999998887776543223333443 33333 344444444321 344455687777777
Q ss_pred HHHHHHHHHhHhhhhc
Q 017568 351 AAGLMSMAMDARRRYG 366 (369)
Q Consensus 351 ~~~~~~~~~~~~~~~~ 366 (369)
|.+++ +|+-.|+|-|
T Consensus 174 a~ail-aAL~~r~~TG 188 (402)
T d1xk7a1 174 TTAAL-AALHKVRETG 188 (402)
T ss_dssp HHHHH-HHHHHHHHHC
T ss_pred hhhhH-HHhhccccCC
Confidence 76655 5666777665
No 6
>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.60 E-value=63 Score=22.84 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.7
Q ss_pred CCCccccccc-C-CCCCCCCCCcc
Q 017568 23 DGGYDITLTY-G-RPLPPSDETCY 44 (369)
Q Consensus 23 gGGYDi~~tY-G-~plpps~etcy 44 (369)
-|=|.|.++| | .|||-|.-+|-
T Consensus 67 ~G~h~i~V~~~g~~~I~gSPF~v~ 90 (97)
T d2nqca1 67 PGNYLIAIKYGGPQHIVGSPFKAK 90 (97)
T ss_dssp CEEEEEEEEESSSCBCTTCSEEEE
T ss_pred CEeEEEEEEECCccccCCcCEEEE
Confidence 3568999999 6 49999987774
No 7
>d3c0na1 d.169.1.2 (A:2-84) Proaerolysin, N-terminal domain {Aeromonas hydrophila [TaxId: 644]}
Probab=5.28 E-value=48 Score=24.98 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=9.9
Q ss_pred CCCCCCCccCCCC
Q 017568 36 LPPSDETCYPSSS 48 (369)
Q Consensus 36 lpps~etcyP~Ss 48 (369)
=-+|+.+|||..-
T Consensus 67 g~~~~TwCyP~~P 79 (83)
T d3c0na1 67 GTASNTWCYPTNP 79 (83)
T ss_dssp CCCSSEEEEESSC
T ss_pred CCCCCceeccCCC
Confidence 3478899999763
No 8
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=5.10 E-value=96 Score=24.57 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=31.8
Q ss_pred cCCCcceeeccccCCCCccccccccccchhh--------hhccccccccccccc
Q 017568 282 SMNPGMVASRSTSRGMGGNLNLNTKAGTAVV--------RSMENLRGSRVMGGL 327 (369)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 327 (369)
-.||...--|....|| .||-.|||||- -.+-.+.|.|+.=|+
T Consensus 46 E~N~aL~FDR~~a~G~----RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~ 95 (122)
T d4ubpb_ 46 EVNKELLFDRAEGIGR----RLNIPSGTAARFEPGEEMEVELTELGGNREVFGI 95 (122)
T ss_dssp GSCTTEESCGGGGTTE----EECSCTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred hcCccccccHHHHhhc----ccCCCCCCeEEECCCCeEEEEEEEcCCceEEEcC
Confidence 3689999999999987 57788999973 134467888876554
No 9
>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.84 E-value=1.3e+02 Score=25.82 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=37.5
Q ss_pred CCccccc----cccccchhhhhcccccccccccccccccCcCCceehhhH-----HHHHHHHHH
Q 017568 297 MGGNLNL----NTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMR-----DVVMMMNIA 351 (369)
Q Consensus 297 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 351 (369)
+.|+-|+ |-.+|......+..|-+..+.|-++ -|++.||+++-| |+|-|.-||
T Consensus 261 v~G~AnvLIfPnl~agNi~yK~l~~l~~~~~iGpil--~G~~~Pv~~~sr~~s~~di~~~~aia 322 (329)
T d1r5ja_ 261 VAGQANTFVFPDLQSGNIGYKIAQRLGMFDAIGPIL--QGLNKPVNDLSRGSSAEDIYKLAIIT 322 (329)
T ss_dssp STTCCCEEECSSHHHHHHHHHHHHHTTCCEEEEEEE--ESBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred cCCCCCEEEeCChHHHHHHHHHHHHhcCCeEEcchh--hCCCCCEEECCCCCCHHHHHHHHHHH
Confidence 5566663 5567777788888888888888665 489999999876 555444443
No 10
>d1by5a_ f.4.3.3 (A:) Ferric hydroxamate uptake receptor FhuA {Escherichia coli [TaxId: 562]}
Probab=4.54 E-value=89 Score=25.13 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.3
Q ss_pred cCCCCccccccccccch
Q 017568 294 SRGMGGNLNLNTKAGTA 310 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~ 310 (369)
++++||-+|+.||.++.
T Consensus 125 ~~a~gGvIni~Tk~~~~ 141 (697)
T d1by5a_ 125 KSSPGGLLNMVSKRPTT 141 (697)
T ss_dssp SCCTTEEEEEEECCCCS
T ss_pred CCCccEEEEEEECCCCC
Confidence 57899999999997654
Done!