Query 017570
Match_columns 369
No_of_seqs 180 out of 1179
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 2.1E-94 4.4E-99 714.2 29.2 321 21-360 1-322 (409)
2 KOG0682 Ammonia permease [Inor 100.0 2.1E-91 4.6E-96 700.4 28.5 337 9-366 16-366 (500)
3 PRK10666 ammonium transporter; 100.0 8.9E-91 1.9E-95 701.4 28.4 320 19-360 25-345 (428)
4 TIGR00836 amt ammonium transpo 100.0 5.4E-88 1.2E-92 678.5 30.3 316 26-360 1-321 (403)
5 TIGR03644 marine_trans_1 proba 100.0 2.5E-87 5.3E-92 673.0 30.3 323 23-360 2-334 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 1.8E-79 4E-84 618.0 14.9 308 27-360 1-316 (399)
7 KOG3796 Ammonium transporter R 100.0 1.4E-41 3.1E-46 329.1 10.7 225 130-361 115-345 (442)
8 PF00909 Ammonium_transp: Ammo 84.0 16 0.00034 37.4 12.2 143 20-219 184-329 (399)
9 TIGR03644 marine_trans_1 proba 78.4 87 0.0019 32.3 17.4 139 20-216 199-344 (404)
10 TIGR00836 amt ammonium transpo 74.7 99 0.0021 31.9 14.5 141 21-218 191-333 (403)
11 PRK11624 cdsA CDP-diglyceride 74.6 4.5 9.7E-05 39.6 4.6 88 268-356 158-258 (285)
12 PF01148 CTP_transf_1: Cytidyl 63.8 10 0.00022 35.3 4.4 67 289-356 161-236 (259)
13 PF06946 Phage_holin_5: Phage 59.8 57 0.0012 26.9 7.4 59 287-347 33-92 (93)
14 PLN02594 phosphatidate cytidyl 51.7 12 0.00025 37.8 2.6 42 314-356 235-276 (342)
15 COG0575 CdsA CDP-diglyceride s 50.6 19 0.0004 34.7 3.8 80 276-356 148-241 (265)
16 PRK10666 ammonium transporter; 47.2 3.5E+02 0.0077 28.2 13.3 136 24-217 218-356 (428)
17 TIGR01427 PTS_IIC_fructo PTS s 45.5 1.4E+02 0.0029 30.2 9.2 49 283-337 84-132 (346)
18 PF06570 DUF1129: Protein of u 42.3 1.6E+02 0.0034 27.2 8.5 110 230-347 77-205 (206)
19 PF01891 CbiM: Cobalt uptake s 40.1 1.7E+02 0.0036 26.9 8.3 87 196-305 61-147 (205)
20 PF14074 DUF4257: Protein of u 39.9 17 0.00038 29.1 1.5 58 269-326 4-74 (82)
21 COG4120 ABC-type uncharacteriz 39.4 24 0.00053 34.4 2.6 56 289-350 33-90 (293)
22 PRK04032 hypothetical protein; 36.8 16 0.00035 32.9 0.9 32 315-347 68-99 (159)
23 PLN02953 phosphatidate cytidyl 36.0 50 0.0011 34.0 4.4 86 270-356 277-374 (403)
24 PF06738 DUF1212: Protein of u 34.2 1.1E+02 0.0024 27.5 6.0 71 227-308 99-171 (193)
25 PF12270 Cyt_c_ox_IV: Cytochro 34.0 1.1E+02 0.0025 26.8 5.8 28 193-220 34-63 (137)
26 TIGR01594 holin_lambda phage h 32.2 89 0.0019 26.2 4.6 62 286-347 41-107 (107)
27 PRK10712 PTS system fructose-s 30.6 1.8E+02 0.0039 31.5 7.7 104 229-350 236-344 (563)
28 COG4280 Predicted membrane pro 26.0 76 0.0017 29.9 3.4 32 210-246 49-80 (236)
29 PF01102 Glycophorin_A: Glycop 24.0 1.1E+02 0.0024 26.4 3.8 29 315-343 66-95 (122)
30 PF11023 DUF2614: Protein of u 23.9 1.9E+02 0.0041 24.7 5.1 43 39-81 18-63 (114)
31 PRK13823 conjugal transfer pro 21.7 1.5E+02 0.0032 24.4 4.0 46 287-337 20-65 (94)
32 PF05552 TM_helix: Conserved T 21.4 1E+02 0.0023 22.0 2.8 37 313-350 17-53 (53)
33 PRK10457 hypothetical protein; 21.1 2E+02 0.0044 22.9 4.6 33 296-328 9-43 (82)
34 PF09877 DUF2104: Predicted me 20.1 1.8E+02 0.004 24.2 4.2 58 268-325 9-74 (99)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-94 Score=714.23 Aligned_cols=321 Identities=36% Similarity=0.640 Sum_probs=298.0
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccch
Q 017570 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (369)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~ 100 (369)
+|++|++|+|+|+.|| ++|||||+|+|+|++|+||++|+++||++++++++++|+++||+++||++.++|+|+...++
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~- 78 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFF- 78 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHh-
Confidence 4689999999999999 99999999999999999999999999999999999999999999999987789999975431
Q ss_pred hhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceee
Q 017570 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWv 180 (369)
+ +.. ...+. . ...++|++++++||++||++|++|++|+++||+|+.+|++|+++|.++||||++||+
T Consensus 79 ---~-~~~-~~~~~---~-----~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWv 145 (409)
T COG0004 79 ---L-NGL-GFAAV---A-----GGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWV 145 (409)
T ss_pred ---c-cCc-ccccc---C-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeE
Confidence 1 110 00000 0 113589999999999999999999999999999999999999999999999999999
Q ss_pred e-ccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchh
Q 017570 181 W-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259 (369)
Q Consensus 181 W-~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~ 259 (369)
| ++|||.++|++|||||+|||+.+|+.||++++++|||+++.+++++|||++++++|+.+||+||||||+||+++.+.+
T Consensus 146 Wggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~ 225 (409)
T COG0004 146 WGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV 225 (409)
T ss_pred ecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhh
Confidence 9 677999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhc
Q 017570 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC 339 (369)
Q Consensus 260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l 339 (369)
+..+++||++|+++++++|++++++++||+|+..++||++||||+|||+|++|+||+|++||+++|++|+++++.++||
T Consensus 226 a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~- 304 (409)
T COG0004 226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK- 304 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cccCccccccccchhccccee
Q 017570 340 SLLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 340 ~~~~~IDD~~~~~~~Hg~~~~ 360 (369)
+|+|||+|++++|+++|+
T Consensus 305 ---l~~DD~ld~f~vHGvgGi 322 (409)
T COG0004 305 ---LGVDDALDVFGVHGVGGI 322 (409)
T ss_pred ---cCCCCcccceeccchhhH
Confidence 799999999999998653
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-91 Score=700.43 Aligned_cols=337 Identities=32% Similarity=0.518 Sum_probs=306.6
Q ss_pred ccccCCCCccccccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC-
Q 017570 9 AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQ- 87 (369)
Q Consensus 9 ~~~~~~~~~~~~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~- 87 (369)
+.+.+.+..|..+|..|+.|++.++.+| |.|||||+|||+|+||+||++|+|+||++|.+++.++||++||+||||++
T Consensus 16 ~~~~~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~ 94 (500)
T KOG0682|consen 16 GGNVLTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSP 94 (500)
T ss_pred ccccccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCC
Confidence 4444667788889999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred CCCcccCCcccchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q 017570 88 LLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPL 167 (369)
Q Consensus 88 ~~~fiG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l 167 (369)
.|+|||+.++| +.+...++.. ....+|++.+++||++||+++++|++||++||+|+.+|++|+++
T Consensus 95 ~n~FiG~~~~F-~~~~~~g~~~--------------~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~ 159 (500)
T KOG0682|consen 95 SNGFIGKLDFF-GLRNVSGDPS--------------SGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFF 159 (500)
T ss_pred CCCceeecccc-ccccCCCCcC--------------CccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHH
Confidence 79999998752 2222211110 11228999999999999999999999999999999999999999
Q ss_pred HHHhhhcccceeee-ccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHhh
Q 017570 168 WLMFSYTVGAFSLW-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD---KERFPPNNVLLMLAGAGLLWM 243 (369)
Q Consensus 168 ~~~~vYp~~ahWvW-~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~---~~~~~~~n~~~~~lG~~lLw~ 243 (369)
|.++||||++||+| ++||++++|++|||||++||++||.+||++++++|||++|+ .++++|||++++++|+++||+
T Consensus 160 ~~tlVY~~~a~W~W~~~Gw~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWf 239 (500)
T KOG0682|consen 160 LTTLVYCPVAHWVWSPNGWLYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWF 239 (500)
T ss_pred HHHhcccccceeeecCCceeeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999973 457899999999999999999
Q ss_pred hHhhhccCcccccchhhH-HHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHH
Q 017570 244 GWSGFNGGAPYAAHIASS-IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGI 322 (369)
Q Consensus 244 GW~gFN~gs~~~~~~~~~-~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~ 322 (369)
||++||+||.++++.+.. ++++||+||++.|++||++++++++||||+..+|||+|+|||||||+|++++||+|+++|+
T Consensus 240 GWl~FN~GS~~~i~~~~~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~ 319 (500)
T KOG0682|consen 240 GWLGFNGGSFYAINLRSWARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGA 319 (500)
T ss_pred HHHccCCcccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhH
Confidence 999999999999888877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhccccCccccccccchhcccc--------eeeeeccC
Q 017570 323 LSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTI--------ASFVKKKK 366 (369)
Q Consensus 323 iag~v~~~~~~~l~~~l~~~~~IDD~~~~~~~Hg~~--------~~~~~~~~ 366 (369)
++|++|....+. ++|+|||||+|++++|+++ |+|++++.
T Consensus 320 va~~~~~~~~kL-----~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v 366 (500)
T KOG0682|consen 320 VAGLVCNAANKL-----KERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDV 366 (500)
T ss_pred HHHHHHHHHHHH-----HHHhcCCcHHHHHHHhccccchhhheeeeeccCcc
Confidence 999999876654 3458999999999999885 56887764
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=8.9e-91 Score=701.36 Aligned_cols=320 Identities=32% Similarity=0.536 Sum_probs=295.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhH-HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcc
Q 017570 19 DWLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAP 97 (369)
Q Consensus 19 ~~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~ 97 (369)
+.+|+.|++|+++|++|| |+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+.++
T Consensus 25 ~~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~ 102 (428)
T PRK10666 25 AVADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNW 102 (428)
T ss_pred cccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHH
Confidence 357889999999999999 9998 9999999999999999999999999999999999999999999975 689987654
Q ss_pred cchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 017570 98 ALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~a 177 (369)
++. +.. +. ++....+|++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++
T Consensus 103 ~~~-----~~~--~~---------~~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~va 166 (428)
T PRK10666 103 LML-----KNI--EL---------TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIA 166 (428)
T ss_pred hhh-----cCC--Cc---------ccccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhh
Confidence 321 110 00 00112367889999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccc
Q 017570 178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAH 257 (369)
Q Consensus 178 hWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~ 257 (369)
||+|++|||.++|++|||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||+|||+||++..+
T Consensus 167 hWvW~~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~ 246 (428)
T PRK10666 167 HMVWGGGLLASDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAAN 246 (428)
T ss_pred hheeCchhHhhcchhhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999888
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHh
Q 017570 258 IASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK 337 (369)
Q Consensus 258 ~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~ 337 (369)
+++.++++||++|+++|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++
T Consensus 247 ~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~ 326 (428)
T PRK10666 247 EIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKR 326 (428)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred hccccCccccccccchhccccee
Q 017570 338 KCSLLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 338 ~l~~~~~IDD~~~~~~~Hg~~~~ 360 (369)
+ +|||||||++++|+++|+
T Consensus 327 ~----~~iDD~~~a~~vHgv~Gi 345 (428)
T PRK10666 327 W----LRVDDPCDVFGVHGVCGI 345 (428)
T ss_pred c----CCCCCCcCccHhhhHhHH
Confidence 4 799999999999998764
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=5.4e-88 Score=678.46 Aligned_cols=316 Identities=35% Similarity=0.652 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccC--CCCCcccCCcccchhhh
Q 017570 26 SAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD--QLLPFWGKGAPALGQKY 103 (369)
Q Consensus 26 ~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~--~~~~fiG~~~~~~~~~~ 103 (369)
++|+++|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|+.++++.
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~--- 76 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLK--- 76 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhc---
Confidence 57999999999 9999999999999999999999999999999999999999999999998 55789998743321
Q ss_pred hccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeee-c
Q 017570 104 LVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-G 182 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW-~ 182 (369)
.. +.+. . ....+.+|++.+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+| +
T Consensus 77 ---~~--~~~~---~---~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~ 145 (403)
T TIGR00836 77 ---NF--LYPG---K---ISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGG 145 (403)
T ss_pred ---cC--Cccc---c---cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecC
Confidence 10 0000 0 001234789999999999999999999999999999999999999999999999999999 5
Q ss_pred cccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCC--CCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhh
Q 017570 183 GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD--KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260 (369)
Q Consensus 183 ~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~--~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~ 260 (369)
+|||+++|++|||||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..++++
T Consensus 146 ~GwL~~lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~ 225 (403)
T TIGR00836 146 GGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTA 225 (403)
T ss_pred CchhhccCcchhcCceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 9999999999999999999999999999999999999998 67889999999999999999999999999999888899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 017570 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCS 340 (369)
Q Consensus 261 ~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~ 340 (369)
.++++||++|+++|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++|
T Consensus 226 ~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~-- 303 (403)
T TIGR00836 226 AYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK-- 303 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877664
Q ss_pred ccCccccccccchhccccee
Q 017570 341 LLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 341 ~~~~IDD~~~~~~~Hg~~~~ 360 (369)
+|||||||++++|+++|+
T Consensus 304 --~~iDD~~~~~~vHg~~Gi 321 (403)
T TIGR00836 304 --LKIDDPLDAFAVHGVGGI 321 (403)
T ss_pred --cCCCCCcccchhhhhhHH
Confidence 799999999999999764
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=2.5e-87 Score=673.03 Aligned_cols=323 Identities=26% Similarity=0.423 Sum_probs=282.2
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchhh
Q 017570 23 KGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQK 102 (369)
Q Consensus 23 ~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~~ 102 (369)
..|+.|+++|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. +++|+....
T Consensus 2 ~~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~-~~~~g~~g~---- 75 (404)
T TIGR03644 2 ALDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGG-IFLGGILGS---- 75 (404)
T ss_pred cccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCC-cccCCcchh----
Confidence 36999999999999 899999999999999999999999999999999999999999999999762 233321100
Q ss_pred hhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeec
Q 017570 103 YLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~ 182 (369)
+.........+. ... ...+..+|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+
T Consensus 76 f~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~ 151 (404)
T TIGR03644 76 FLLGADNPVGDL--IAG--FEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG 151 (404)
T ss_pred hhhccccccccc--ccc--cccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 100000000000 000 0012246778889999999999999999999999999999999999999999999999998
Q ss_pred cccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHHHHHhhhHhhhccCcccccc
Q 017570 183 GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDK-----ERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAH 257 (369)
Q Consensus 183 ~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~-----~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~ 257 (369)
+|||+++|++|||||++||++||++||++++++|||++|++ +++||||++++++|+++||+||+|||+||++..+
T Consensus 152 ~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~ 231 (404)
T TIGR03644 152 GGWLDDLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALS 231 (404)
T ss_pred chHHhhcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhcc
Confidence 89999999999999999999999999999999999998762 2578999999999999999999999999987765
Q ss_pred h-----hhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHH
Q 017570 258 I-----ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTM 332 (369)
Q Consensus 258 ~-----~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~ 332 (369)
. .+.++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.
T Consensus 232 ~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~ 311 (404)
T TIGR03644 232 DVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSI 311 (404)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 36899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhccccCccccccccchhccccee
Q 017570 333 MILHKKCSLLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 333 ~~l~~~l~~~~~IDD~~~~~~~Hg~~~~ 360 (369)
++++| +|||||||++++|+++|+
T Consensus 312 ~~~~~-----~~iDD~~~~~~vHg~~Gi 334 (404)
T TIGR03644 312 VLLDK-----LKIDDPVGAISVHGVAGI 334 (404)
T ss_pred HHHHh-----CCCCCCcCchHhhhHHHH
Confidence 87643 799999999999999875
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=1.8e-79 Score=618.02 Aligned_cols=308 Identities=32% Similarity=0.546 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC--CCCcccCCcccchhhhh
Q 017570 27 AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQ--LLPFWGKGAPALGQKYL 104 (369)
Q Consensus 27 ~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~--~~~fiG~~~~~~~~~~~ 104 (369)
+|+++|+.+| ++||+||+++|+|.+|+||++|+++||++|+++++++||++||+++||++ .++++|+..+...
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~---- 75 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAF---- 75 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHH----
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccc----
Confidence 6999999999 89999999999999999999999999999999999999999999999987 4566665221100
Q ss_pred ccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeee-cc
Q 017570 105 VGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-GG 183 (369)
Q Consensus 105 ~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW-~~ 183 (369)
. .+...+|+..+++||++||+++++|++|+++||+|+.+|++|+++|+.++|||++||+| ++
T Consensus 76 -~----------------~~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~ 138 (399)
T PF00909_consen 76 -G----------------FQWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGEN 138 (399)
T ss_dssp -H----------------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHC
T ss_pred -c----------------chhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecc
Confidence 0 01123677889999999999999999999999999999999999999999999999999 69
Q ss_pred ccccccCce-ecCCcEEehhhhhHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchh
Q 017570 184 GFLYQWGVI-DYSGGYVIHVSSGIAGLTAAYWVGPRLKSD---KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259 (369)
Q Consensus 184 GwL~~lG~~-DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~---~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~ 259 (369)
|||.++|.. ||+||++||++||++||++++++|||++|+ +++++|||++++++|+++||+||+|||+||++..+++
T Consensus 139 Gwl~~~g~~~DfaG~~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~ 218 (399)
T PF00909_consen 139 GWLAQLGFLIDFAGSGVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGR 218 (399)
T ss_dssp HHHHHCCHH--TT-TTTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHH
T ss_pred hhhccCccCCCCccceeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCc
Confidence 999999999 999999999999999999999999999986 6788999999999999999999999999999998887
Q ss_pred hHH-HHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhh
Q 017570 260 SSI-AILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK 338 (369)
Q Consensus 260 ~~~-a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~ 338 (369)
+.. +++||++|+++|+++|++++++.+||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++++++++|
T Consensus 219 ~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~ 298 (399)
T PF00909_consen 219 AWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR 298 (399)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999866664
Q ss_pred ccccCccccccccchhccccee
Q 017570 339 CSLLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 339 l~~~~~IDD~~~~~~~Hg~~~~ 360 (369)
+|||||||++++|+++|+
T Consensus 299 ----~~iDD~~~~~~vHg~~Gi 316 (399)
T PF00909_consen 299 ----LKIDDPVGAFAVHGVGGI 316 (399)
T ss_dssp ----HTS-HTTGHHHHCHHHHH
T ss_pred ----eEeccccceEeeeeccHH
Confidence 699999999999999774
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=329.07 Aligned_cols=225 Identities=19% Similarity=0.250 Sum_probs=200.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeeccccccccCceecCCcEEehhhhhHHHH
Q 017570 130 MATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGL 209 (369)
Q Consensus 130 ~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL 209 (369)
...+.+..+.||+.++.|..||+.+|+++.|+++++++.+++ ....-|-+ +..++..|.+||+.||.+|+++||
T Consensus 115 i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~-~~~~e~v~-----~n~~~v~d~g~smtih~FgAYFGL 188 (442)
T KOG3796|consen 115 IGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTA-FGINEMVI-----SNIFNVNDHGGSMTIHAFGAYFGL 188 (442)
T ss_pred EEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHH-HHHHHHHH-----HHhccccccCCceEEEehhhhhhh
Confidence 345678899999999999999999999999999999997664 33322211 356899999999999999999999
Q ss_pred HHHHHHcCCCCC---CCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHHHHhHHHHHHHHHHHHHHHHHH-
Q 017570 210 TAAYWVGPRLKS---DKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIF- 285 (369)
Q Consensus 210 ~~a~~lGpR~g~---~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~- 285 (369)
+++++++||..+ +++....|++.++++|+++||+.||+||+..+.. ++.+.|+++||++|.|++.+|++.++.+.
T Consensus 189 avA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~~-~~~r~rAi~NTy~slAa~tvTtf~~Sslv~ 267 (442)
T KOG3796|consen 189 AVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALARS-GDARHRAIFNTYLSLAASTVTTFAVSSLVH 267 (442)
T ss_pred hHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhcC-chhhHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 999999988755 3455667999999999999999999999875443 56779999999999999999999999875
Q ss_pred -cCCCcHHHhhhhhhcccccccccCCC-CChHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccccchhcccceee
Q 017570 286 -FGKPSVIGAVQGMMTGLVCITPGAGL-VQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASF 361 (369)
Q Consensus 286 -~~k~~~~~~~nG~laGlVaIta~a~~-v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~~~~~Hg~~~~~ 361 (369)
+||.|+++++|..|||.|||+.+|+. .+||+|++||++||.+++.+++++.+++++++||+|+|+++|+|++||+.
T Consensus 268 ~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l 345 (442)
T KOG3796|consen 268 PQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLL 345 (442)
T ss_pred ccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccccccccccccccccchHHH
Confidence 68999999999999999999999995 59999999999999999999999999999999999999999999999974
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=84.00 E-value=16 Score=37.38 Aligned_cols=143 Identities=16% Similarity=0.122 Sum_probs=91.2
Q ss_pred cccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHH---HHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCc
Q 017570 20 WLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVN---SAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGA 96 (369)
Q Consensus 20 ~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~---~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~ 96 (369)
..+.-|..+..+.+.+. + .|..-|++|.....|... +++..+++.+.+.+.|.++.|-.. |+ .+
T Consensus 184 ~~~~~s~~~~~lG~~lL-w---~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk--------~~ 250 (399)
T PF00909_consen 184 PIPPHSPPLAMLGTLLL-W---FGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK--------WS 250 (399)
T ss_dssp S--HCHHHHHHHHHHHH-H---HHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS----------
T ss_pred CCCCCcHHHhhhhHHHH-H---HHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc--------cc
Confidence 34455667888877665 4 366667777776666555 445667888888999987765333 11 00
Q ss_pred ccchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccc
Q 017570 97 PALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVG 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ 176 (369)
...+.+.+.|. .+...+-++-+++.+-++..++ ++.++...
T Consensus 251 -----------------------------------~~~~~nG~laG---lVaita~~~~v~p~~A~~iG~i-ag~i~~~~ 291 (399)
T PF00909_consen 251 -----------------------------------MVGICNGALAG---LVAITAGAGYVTPWGALLIGAI-AGLISYFG 291 (399)
T ss_dssp -----------------------------------HHHHHHHHHHH---HHHHTTTTTTS-HHHHHHHHHH-HHHHHHHH
T ss_pred -----------------------------------hhhhhhhhhhh---hhheecccCCCcHHHHHHhhhh-Hhhhhhhh
Confidence 11223333333 3333555577888888888877 55555443
Q ss_pred ceeeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCC
Q 017570 177 AFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL 219 (369)
Q Consensus 177 ahWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~ 219 (369)
.+| ++++++..|-.|...||..+|..|...+-+.-.+.
T Consensus 292 ~~~-----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~ 329 (399)
T PF00909_consen 292 VSW-----LLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPE 329 (399)
T ss_dssp HHH-----HHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCH
T ss_pred eec-----ccceeEeccccceEeeeeccHHHHHHHHHHHhccc
Confidence 332 25789999999999999999999998887775543
No 9
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=78.43 E-value=87 Score=32.34 Aligned_cols=139 Identities=12% Similarity=-0.015 Sum_probs=84.7
Q ss_pred cccchhHHHHHHHHHHHHHHhHHHHHHHhcCCC------Ch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcc
Q 017570 20 WLNKGDSAWQMTASTLVGIQSMPGLLIIYASIV------KK-KWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFW 92 (369)
Q Consensus 20 ~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~v------r~-kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fi 92 (369)
.+..-|..+.++.+.+. ++--+| |.+|+. ++ +.+..+.+...++.+.+.+.|.++-|-. +++.
T Consensus 199 ~~~~~n~~~~~lG~~iL-w~gW~g---FN~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~----- 268 (404)
T TIGR03644 199 PIPGSNLPLATLGTFIL-WMGWFG---FNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKA----- 268 (404)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHh---hcchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC-----
Confidence 34456777888777776 554444 455542 22 2344566666788888999998886633 2321
Q ss_pred cCCcccchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhh
Q 017570 93 GKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFS 172 (369)
Q Consensus 93 G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~v 172 (369)
+ ...+.+...|- ....-+-++-.++.+-++..++ ++++
T Consensus 269 ---~-----------------------------------~~~~~nG~LAG---LVaITa~~~~v~p~~A~iiG~i-ag~v 306 (404)
T TIGR03644 269 ---D-----------------------------------LTMVLNGALAG---LVAITAEPLTPSPLAATLIGAV-GGVI 306 (404)
T ss_pred ---C-----------------------------------HHHHHHHHHhh---hhhhccccCCCCHHHHHHHHHH-HHHH
Confidence 0 00111111121 1112233456777777788776 5555
Q ss_pred hcccceeeeccccccccCceecCCcEEehhhhhHHHHHHHHHHc
Q 017570 173 YTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (369)
Q Consensus 173 Yp~~ahWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lG 216 (369)
+..... ++++++..|--+...||..+|..|...+-+..
T Consensus 307 ~~~~~~------~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 307 VVFSIV------LLDKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HHHHHH------HHHhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 543322 46789999999999999999999988776663
No 10
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=74.68 E-value=99 Score=31.88 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=84.7
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChh--hHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCccc
Q 017570 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKK--WAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (369)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~k--n~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~ 98 (369)
...-|..+.++.+.+. ++ |..-|.+|+.... .+.++++...++.+.+.+.|.++-|-. .|+- +.
T Consensus 191 ~~~~n~~~~~lGt~lL-w~---gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~--------~~- 256 (403)
T TIGR00836 191 IRPHNVPLVVLGTFIL-WF---GWFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKP--------TL- 256 (403)
T ss_pred CCCCCHHHHHHHHHHH-HH---HHhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--------CH-
Confidence 3445677888877665 44 6666677765433 445666677888999999998886632 2211 00
Q ss_pred chhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccce
Q 017570 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ah 178 (369)
..+.+ .+.+-.....+-++-.++..-++..++ +++++....+
T Consensus 257 ----------------------------------~~~~n---G~LAGLVaita~a~~v~p~~A~viG~i-ag~~~~~~~~ 298 (403)
T TIGR00836 257 ----------------------------------LGACN---GILAGLVAITPGCGVVTPWGAIIIGLV-AGVLCYLAVS 298 (403)
T ss_pred ----------------------------------HHHHh---hhhhhheeecCCCCCCCHHHHHHHHHH-HHHHHHHHHH
Confidence 00000 112222222333355666666666665 4333332221
Q ss_pred eeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCC
Q 017570 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPR 218 (369)
Q Consensus 179 WvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR 218 (369)
+ ..++++..|--+...||..+|..|....-++.++
T Consensus 299 ~-----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 299 K-----LKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred H-----HHHHcCCCCCcccchhhhhhHHHHHHHHHHhccc
Confidence 1 2357899999999999999999999888777653
No 11
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=74.57 E-value=4.5 Score=39.60 Aligned_cols=88 Identities=9% Similarity=-0.120 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHcC-----CCcHHHhhhhhhcccccccccCC--------CCChHHHHHHHHHHhHHHHHHHHH
Q 017570 268 NVAAATSLLVWTCLDVIFFG-----KPSVIGAVQGMMTGLVCITPGAG--------LVQSWAAIVMGILSGSIPWVTMMI 334 (369)
Q Consensus 268 ~la~a~g~l~~~~~~~~~~~-----k~~~~~~~nG~laGlVaIta~a~--------~v~p~~A~iiG~iag~v~~~~~~~ 334 (369)
.+..-++=..+++..+...| |.|+.-.-+|.++|+++.+-.+. ..+++..++.|++.++.+..+ ..
T Consensus 158 ~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-DL 236 (285)
T PRK11624 158 MILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLG-DL 236 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHh-HH
Confidence 33344455556666665433 35777788888888766443221 135677788888888887776 45
Q ss_pred HHhhccccCccccccccchhcc
Q 017570 335 LHKKCSLLQQVSFTFLKLFYFL 356 (369)
Q Consensus 335 l~~~l~~~~~IDD~~~~~~~Hg 356 (369)
.|..+|++.+|.|--..++=||
T Consensus 237 ~ES~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 237 TESMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred HHHHHhhccCCCCCcCcCCCcC
Confidence 6888888999999999999886
No 12
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=63.82 E-value=10 Score=35.34 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=49.1
Q ss_pred CcHHHhhhhhhcccccccccCC----C-----CChHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccccchhcc
Q 017570 289 PSVIGAVQGMMTGLVCITPGAG----L-----VQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFL 356 (369)
Q Consensus 289 ~~~~~~~nG~laGlVaIta~a~----~-----v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~~~~~Hg 356 (369)
.++.....|.++|.++....+- + .+++.+++++++++++..++- ..+..+|+..+|.|--..++-||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gd-l~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGD-LFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccccCcC
Confidence 4555566666666665443321 1 567999999999999988775 44666777899999999999997
No 13
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=59.75 E-value=57 Score=26.86 Aligned_cols=59 Identities=19% Similarity=0.060 Sum_probs=40.5
Q ss_pred CCC-cHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhccccCcccc
Q 017570 287 GKP-SVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSF 347 (369)
Q Consensus 287 ~k~-~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD 347 (369)
.|| ....+.-|++.|+++. .-.+-.+++..+.-|.++|+....-...+.|| .+|.+=||
T Consensus 33 ~K~iPlIs~viGilLG~~~~-~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r-~~~~~e~~ 92 (93)
T PF06946_consen 33 NKWIPLISVVIGILLGAAAY-PLTGDGNLALMAWAGGLAGLAATGLFEQFTNR-SKKYGEDD 92 (93)
T ss_pred cchhhHHHHHHHHHHHHHhh-hcCCCccHHHHHHHHHHhhhhhhhHHHHHHhh-hhhcCcCC
Confidence 344 5667788999998874 22333467777778999999888777777765 33455555
No 14
>PLN02594 phosphatidate cytidylyltransferase
Probab=51.65 E-value=12 Score=37.83 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccccchhcc
Q 017570 314 SWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFL 356 (369)
Q Consensus 314 p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~~~~~Hg 356 (369)
.+.++++|++++++..+|= ..+..+|+.+||.|--+.++-||
T Consensus 235 ~~h~l~l~l~aSl~a~fGd-lfaS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHccCCCcccCccCCCc
Confidence 5789999999999998885 45677777899999999999997
No 15
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=50.64 E-value=19 Score=34.72 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcC-----CCcHHHhhhhhhcccccccccCCC---------CChHHHHHHHHHHhHHHHHHHHHHHhhccc
Q 017570 276 LVWTCLDVIFFG-----KPSVIGAVQGMMTGLVCITPGAGL---------VQSWAAIVMGILSGSIPWVTMMILHKKCSL 341 (369)
Q Consensus 276 l~~~~~~~~~~~-----k~~~~~~~nG~laGlVaIta~a~~---------v~p~~A~iiG~iag~v~~~~~~~l~~~l~~ 341 (369)
+.+++..+...+ |.|+.-.+.|.+.|.+..+..+.. .+++..++++++.++++.++ ...+..+|+
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lG-DL~eS~iKR 226 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLG-DLFESYIKR 226 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 444555555433 367777888888887665544432 23588889999999888776 445667778
Q ss_pred cCccccccccchhcc
Q 017570 342 LQQVSFTFLKLFYFL 356 (369)
Q Consensus 342 ~~~IDD~~~~~~~Hg 356 (369)
++|+-|--..++=||
T Consensus 227 ~~gvKDsg~liPGHG 241 (265)
T COG0575 227 LLGIKDSGWLIPGHG 241 (265)
T ss_pred ccCCCCcCCCCCCcC
Confidence 899999999998886
No 16
>PRK10666 ammonium transporter; Provisional
Probab=47.24 E-value=3.5e+02 Score=28.16 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhh--HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchh
Q 017570 24 GDSAWQMTASTLVGIQSMPGLLIIYASIVKKKW--AVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQ 101 (369)
Q Consensus 24 ~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn--~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~ 101 (369)
-|....++.+.+. + .|..-|++|+....| +..+.+...++.+.+.+.|.++-|- -.|+. +
T Consensus 218 hn~~~~~lGt~lL-w---~GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~--------~----- 279 (428)
T PRK10666 218 HNLPMVFTGTAIL-Y---IGWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKP--------S----- 279 (428)
T ss_pred CCHHHHHHHHHHH-H---HHHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC--------C-----
Confidence 3445556655554 4 367777888875543 4555666677888888888776542 11210 0
Q ss_pred hhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeee
Q 017570 102 KYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW 181 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW 181 (369)
. ..+.+ .+.+-.....+-++=+++..-++..++ .++++....+
T Consensus 280 --------------------------~----~~~~n---G~LaGLVaITa~a~~v~p~~A~iiG~v-ag~v~~~~~~--- 322 (428)
T PRK10666 280 --------------------------L----LGACS---GAIAGLVGVTPACGYVGVGGALIIGVV-AGLAGLWGVT--- 322 (428)
T ss_pred --------------------------H----HHHHH---HHhhhhhhcccccccCCHHHHHHHHHH-HHHHHHHHHH---
Confidence 0 00011 111111122333455667777777766 4444432222
Q ss_pred cccccc-ccCceecCCcEEehhhhhHHHHHHHHHHcC
Q 017570 182 GGGFLY-QWGVIDYSGGYVIHVSSGIAGLTAAYWVGP 217 (369)
Q Consensus 182 ~~GwL~-~lG~~DfaGs~vVH~~gG~~aL~~a~~lGp 217 (369)
+|. +++..|--+...||..+|+.|....-+...
T Consensus 323 ---~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 323 ---MLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred ---HHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhc
Confidence 244 479999999999999999999888766654
No 17
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=45.45 E-value=1.4e+02 Score=30.22 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=32.4
Q ss_pred HHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHh
Q 017570 283 VIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK 337 (369)
Q Consensus 283 ~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~ 337 (369)
+-..+|+-. .-|.+.|+++....+++ .++++.|++++.+..+..|+++|
T Consensus 84 ~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ikK 132 (346)
T TIGR01427 84 YSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKYIKK 132 (346)
T ss_pred HHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567644 33999999998766665 47888888877766554454444
No 18
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.34 E-value=1.6e+02 Score=27.18 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHhhhHhhhccCcccccc--hhhHHHHHHhHHHHHHHHHHHHHHHHHHc------CCCcHHH-hh-----
Q 017570 230 NVLLMLAGAGLLWMGWSGFNGGAPYAAH--IASSIAILNTNVAAATSLLVWTCLDVIFF------GKPSVIG-AV----- 295 (369)
Q Consensus 230 n~~~~~lG~~lLw~GW~gFN~gs~~~~~--~~~~~a~~NT~la~a~g~l~~~~~~~~~~------~k~~~~~-~~----- 295 (369)
+.....+-..+++++.+++-.|...-.+ ......++++.+.+..+++....+.+... +|.+... +.
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLA 156 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 4555666667777777765555332111 12222566666666666666555554432 2322111 11
Q ss_pred hhhhccc---ccccccC--CCCChHHHHHHHHHHhHHHHHHHHHHHhhccccCcccc
Q 017570 296 QGMMTGL---VCITPGA--GLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSF 347 (369)
Q Consensus 296 nG~laGl---VaIta~a--~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD 347 (369)
-...-++ .+.-|.. ..++||.-++||+++-.+. ++++|| ++|.+
T Consensus 157 ~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~----~~lkkk----~~i~~ 205 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR----FYLKKK----YNITG 205 (206)
T ss_pred HHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH----HHHHHH----hCCCC
Confidence 1111111 2222322 2568899998887765554 456664 67654
No 19
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=40.13 E-value=1.7e+02 Score=26.92 Aligned_cols=87 Identities=23% Similarity=0.195 Sum_probs=44.1
Q ss_pred CcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHHHHhHHHHHHHH
Q 017570 196 GGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSL 275 (369)
Q Consensus 196 Gs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~ 275 (369)
++..+|..|.. ..++++||+.. .......+-+...-|..| .-..-=.|+...+....
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~a-------------~~~~~~vll~qal~fg~g-------g~~~lG~N~l~m~~~~~ 117 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWLA-------------ALAMAIVLLLQALLFGDG-------GWTALGANALNMGVPPV 117 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHHH-------------HHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHH
Confidence 56889988764 34678887641 122222222322222221 11122367776666666
Q ss_pred HHHHHHHHHHcCCCcHHHhhhhhhcccccc
Q 017570 276 LVWTCLDVIFFGKPSVIGAVQGMMTGLVCI 305 (369)
Q Consensus 276 l~~~~~~~~~~~k~~~~~~~nG~laGlVaI 305 (369)
+..+.+.+..++|.......++.++|.+++
T Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~F~ag~l~~ 147 (205)
T PF01891_consen 118 LVSYLLFRLLRRKFPRNIFVAGFLAGFLSV 147 (205)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 655655555455433334456666555544
No 20
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=39.86 E-value=17 Score=29.14 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-------------cHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhH
Q 017570 269 VAAATSLLVWTCLDVIFFGKP-------------SVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGS 326 (369)
Q Consensus 269 la~a~g~l~~~~~~~~~~~k~-------------~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~ 326 (369)
+|...|+++.++-++..+||. -..++.-|++|++.++|...+.-+-+.-+.+.++||+
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 466678888888774444431 2556788999999999888888888888888888875
No 21
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=39.39 E-value=24 Score=34.38 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=41.3
Q ss_pred CcHHHhhhh--hhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccc
Q 017570 289 PSVIGAVQG--MMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFL 350 (369)
Q Consensus 289 ~~~~~~~nG--~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~ 350 (369)
+|+. ..| .+.|-|+.+.-..=++||-|.+++++||.+.-...-.++.| +||+|-+.
T Consensus 33 PDLT--vdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~LLA 90 (293)
T COG4120 33 PDLT--VDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILTLLA 90 (293)
T ss_pred CCcc--ccCcccchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHHHHH
Confidence 4544 444 46777777777777899999999999999876655566654 78988654
No 22
>PRK04032 hypothetical protein; Provisional
Probab=36.77 E-value=16 Score=32.91 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccccCcccc
Q 017570 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVSF 347 (369)
Q Consensus 315 ~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD 347 (369)
+.++++|++.++.+.++= ..++.+|++.+|.|
T Consensus 68 ~~~~~~g~li~v~~~~GD-L~eS~iKR~~gVKD 99 (159)
T PRK04032 68 GVAIILAFLLSFGALLGD-MLGSFIKRRLGLER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHhhccCCCC
Confidence 458899999988887774 45777888899999
No 23
>PLN02953 phosphatidate cytidylyltransferase
Probab=36.01 E-value=50 Score=34.02 Aligned_cols=86 Identities=12% Similarity=-0.146 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHcC----CCcHHHhhhhhhcccccccccC--------CCCChHHHHHHHHHHhHHHHHHHHHHHh
Q 017570 270 AAATSLLVWTCLDVIFFG----KPSVIGAVQGMMTGLVCITPGA--------GLVQSWAAIVMGILSGSIPWVTMMILHK 337 (369)
Q Consensus 270 a~a~g~l~~~~~~~~~~~----k~~~~~~~nG~laGlVaIta~a--------~~v~p~~A~iiG~iag~v~~~~~~~l~~ 337 (369)
..-++=+.+++..+...| +.|+.-...|.++|+++....+ -...++.++++|++.++...++ ...+.
T Consensus 277 ~vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~G-DL~eS 355 (403)
T PLN02953 277 GVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFG-DLTES 355 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence 334444555666655433 2355445555554443321111 1235567788999988888777 45677
Q ss_pred hccccCccccccccchhcc
Q 017570 338 KCSLLQQVSFTFLKLFYFL 356 (369)
Q Consensus 338 ~l~~~~~IDD~~~~~~~Hg 356 (369)
.+|++.+|.|--..++-||
T Consensus 356 ~iKR~~gVKDsG~liPGHG 374 (403)
T PLN02953 356 MIKRDAGVKDSGSLIPGHG 374 (403)
T ss_pred HHhHccCCCCccccCCCCC
Confidence 7888899999998888885
No 24
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=34.20 E-value=1.1e+02 Score=27.50 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCc--HHHhhhhhhccccc
Q 017570 227 PPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPS--VIGAVQGMMTGLVC 304 (369)
Q Consensus 227 ~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~--~~~~~nG~laGlVa 304 (369)
++++..+..++..+.-.+.--+.+|+ .....++...|.++.++.....+.+.. ......+.++++++
T Consensus 99 ~~y~~~~~~l~~~l~~~~fa~lfgg~-----------~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a 167 (193)
T PF06738_consen 99 PRYPPWLVILAAGLASAAFALLFGGS-----------WIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLA 167 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 46777777877777766554444443 233345555555555554443333332 44556677777766
Q ss_pred cccc
Q 017570 305 ITPG 308 (369)
Q Consensus 305 Ita~ 308 (369)
....
T Consensus 168 ~~~~ 171 (193)
T PF06738_consen 168 ALLA 171 (193)
T ss_pred HHHH
Confidence 6554
No 25
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.01 E-value=1.1e+02 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=20.5
Q ss_pred ecCCcEEehhhhhHHHHHHHHH--HcCCCC
Q 017570 193 DYSGGYVIHVSSGIAGLTAAYW--VGPRLK 220 (369)
Q Consensus 193 DfaGs~vVH~~gG~~aL~~a~~--lGpR~g 220 (369)
|-+|....-+.++.+.+++.++ ..||.+
T Consensus 34 E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 34 EWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7888888888888888877653 456654
No 26
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=32.23 E-value=89 Score=26.23 Aligned_cols=62 Identities=8% Similarity=0.084 Sum_probs=33.2
Q ss_pred cCCCcHHHhhhhhhcccccccccC--CC--CChHHHHHHHHHHhHHHHHHH-HHHHhhccccCcccc
Q 017570 286 FGKPSVIGAVQGMMTGLVCITPGA--GL--VQSWAAIVMGILSGSIPWVTM-MILHKKCSLLQQVSF 347 (369)
Q Consensus 286 ~~k~~~~~~~nG~laGlVaIta~a--~~--v~p~~A~iiG~iag~v~~~~~-~~l~~~l~~~~~IDD 347 (369)
+|+-=-..+.++.++|+++.+... .+ +++.-+..+|..=|.+-+=-. .++.+.+++|.+.||
T Consensus 41 ~g~~~~~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGflGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 41 MGGKFKRKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGFVGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheeeccHHHHHHHHHHHHHhhcCCCC
Confidence 443333456788888887755543 33 355666655555444422111 233445555677776
No 27
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=30.64 E-value=1.8e+02 Score=31.46 Aligned_cols=104 Identities=18% Similarity=0.367 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHhhhHh-hhccCcccccchhhHHHHHHhH-HHHHHHHHHHHHHHHH---HcCCCcHHHhhhhhhcccc
Q 017570 229 NNVLLMLAGAGLLWMGWS-GFNGGAPYAAHIASSIAILNTN-VAAATSLLVWTCLDVI---FFGKPSVIGAVQGMMTGLV 303 (369)
Q Consensus 229 ~n~~~~~lG~~lLw~GW~-gFN~gs~~~~~~~~~~a~~NT~-la~a~g~l~~~~~~~~---~~~k~~~~~~~nG~laGlV 303 (369)
|=+|+++.|.+++-+... |.+. .. +...-...+++. =..+.+.+...+..++ .-+|+- +.-|.+.|++
T Consensus 236 ~mlP~vv~gGil~ai~~~~g~~~---~~-~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rpg---lapg~i~g~~ 308 (563)
T PRK10712 236 YMLPMVVAGGLCIALSFAFGIEA---FK-EPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPG---LTPGLIGGML 308 (563)
T ss_pred HHHHHHHHhHHHHHHHHHhCccc---cC-CccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCcc---chHHHHHHHH
Confidence 556888888888877643 2111 11 111111222222 1112233323322222 245654 4689999999
Q ss_pred cccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccc
Q 017570 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFL 350 (369)
Q Consensus 304 aIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~ 350 (369)
+...++|+ .++++.|.++|.+. ++++|+ .|+-+.+.
T Consensus 309 a~~~~~GF---lG~Ilag~lagyv~----~~l~K~----~~lP~~l~ 344 (563)
T PRK10712 309 AVSTGSGF---IGGIIAGFLAGYVA----KLISTK----LKLPQSME 344 (563)
T ss_pred HhcCCchH---HHHHHHHHHHHHHH----HHHHHh----ccCcHHHH
Confidence 87776555 35666666666443 334442 45666555
No 28
>COG4280 Predicted membrane protein [Function unknown]
Probab=25.98 E-value=76 Score=29.89 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=25.2
Q ss_pred HHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHh
Q 017570 210 TAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWS 246 (369)
Q Consensus 210 ~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~ 246 (369)
..++++||-. ..-|-|+...+.|.+++||||=
T Consensus 49 ~l~lvlGk~L-----~lvPln~lqiv~gvLLllFG~r 80 (236)
T COG4280 49 ILTLVLGKLL-----YLVPLNYLQIVSGVLLLLFGYR 80 (236)
T ss_pred HHHHHHccce-----eeeechHHHHHHHHHHHHHHHH
Confidence 3456778765 4568899999999999999974
No 29
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.97 E-value=1.1e+02 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHH-HHHHHHHhhccccC
Q 017570 315 WAAIVMGILSGSIPW-VTMMILHKKCSLLQ 343 (369)
Q Consensus 315 ~~A~iiG~iag~v~~-~~~~~l~~~l~~~~ 343 (369)
...+++|++||++-. +...|+-+|+++|-
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456777777777643 22334445554443
No 30
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.86 E-value=1.9e+02 Score=24.70 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=26.2
Q ss_pred HhHHHHHHHhcCCCChhh--HHHH-HHHHHHHHHHHHHHHHhhhhh
Q 017570 39 QSMPGLLIIYASIVKKKW--AVNS-AFMVLYAFAAVLICWVLVCYR 81 (369)
Q Consensus 39 ~m~~GfalleaG~vr~kn--~~~~-l~~~l~~~~v~~i~w~~~Gy~ 81 (369)
++..|+...|.|.+=+.+ ...+ ++..++.+..++++|+.+|+-
T Consensus 18 lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 18 LIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445577777777554322 2222 234567777788888888874
No 31
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=21.69 E-value=1.5e+02 Score=24.37 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHh
Q 017570 287 GKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK 337 (369)
Q Consensus 287 ~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~ 337 (369)
|-.--..+.||.+|+.+..+. ..|-|.++|++-.++.....+++.|
T Consensus 20 Ga~R~l~i~~g~la~~l~~g~-----~~~~a~~~gl~lw~v~h~~l~~mAK 65 (94)
T PRK13823 20 GGDRELVMFSGLLAGILIFVA-----QTWRAALFGIALWFGALFALRLMAK 65 (94)
T ss_pred CcchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344567999988877655 7788888888887777766666654
No 32
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=21.44 E-value=1e+02 Score=22.01 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccc
Q 017570 313 QSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFL 350 (369)
Q Consensus 313 ~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~ 350 (369)
+-.+|++|=+++=.+.-...+.++|.+ ++.++||.++
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~~~~l-~~~~~d~~la 53 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLVRRLL-EKRGVDKTLA 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccccC
Confidence 457788888888777777777666544 4579998753
No 33
>PRK10457 hypothetical protein; Provisional
Probab=21.06 E-value=2e+02 Score=22.89 Aligned_cols=33 Identities=24% Similarity=0.552 Sum_probs=16.8
Q ss_pred hhhhccccc--ccccCCCCChHHHHHHHHHHhHHH
Q 017570 296 QGMMTGLVC--ITPGAGLVQSWAAIVMGILSGSIP 328 (369)
Q Consensus 296 nG~laGlVa--Ita~a~~v~p~~A~iiG~iag~v~ 328 (369)
-|.++|.+| +.|+-+-...+..+++|++++++-
T Consensus 9 iG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iG 43 (82)
T PRK10457 9 FGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVG 43 (82)
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 344444444 444444445555666666665554
No 34
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=20.09 E-value=1.8e+02 Score=24.16 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHH------cCCCcHHHhhhhhhccc-ccccccCC-CCChHHHHHHHHHHh
Q 017570 268 NVAAATSLLVWTCLDVIF------FGKPSVIGAVQGMMTGL-VCITPGAG-LVQSWAAIVMGILSG 325 (369)
Q Consensus 268 ~la~a~g~l~~~~~~~~~------~~k~~~~~~~nG~laGl-VaIta~a~-~v~p~~A~iiG~iag 325 (369)
.++.-.|....+..++.. ++|.|...+.-+++.|+ +++..... ..-+.++..+|+.-|
T Consensus 9 ~i~fiiGs~~GL~ySYkKy~~P~v~k~iD~~ALv~aiiG~~~~~vn~~~~~~~~~ig~~li~~~~G 74 (99)
T PF09877_consen 9 IILFIIGSFLGLEYSYKKYREPFVEKKIDKLALVLAIIGGLILAVNSPSSPILYTIGAFLIGFPLG 74 (99)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcccHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhhhcc
Confidence 344555666667777653 56889999999999999 77776622 224456666665544
Done!