Query 017570
Match_columns 369
No_of_seqs 180 out of 1179
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7g_A Probable ammonium trans 100.0 3.5E-95 1.2E-99 724.4 27.0 319 20-360 4-323 (385)
2 2b2h_A AMT-1, ammonium transpo 100.0 3.4E-93 1.2E-97 712.5 28.7 310 21-360 1-310 (399)
3 3b9w_A Ammonium transporter fa 100.0 2.5E-71 8.6E-76 555.0 22.8 286 30-361 19-306 (407)
4 3hd6_A Ammonium transporter RH 100.0 1.3E-60 4.3E-65 485.9 24.6 285 28-361 65-355 (490)
5 3b9w_A Ammonium transporter fa 71.4 37 0.0013 33.6 12.0 144 21-217 172-316 (407)
6 2b2h_A AMT-1, ammonium transpo 48.7 1.9E+02 0.0065 28.4 12.4 137 21-216 182-320 (399)
7 3hd6_A Ammonium transporter RH 36.2 2.1E+02 0.0071 29.0 10.6 141 23-216 220-364 (490)
8 1u7g_A Probable ammonium trans 34.4 3.3E+02 0.011 26.5 12.0 139 21-217 193-334 (385)
9 2l2t_A Receptor tyrosine-prote 18.3 1.7E+02 0.0056 19.8 4.1 17 312-328 6-22 (44)
10 2l8s_A Integrin alpha-1; trans 12.1 1.6E+02 0.0054 20.8 2.8 19 312-330 6-24 (54)
No 1
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=3.5e-95 Score=724.42 Aligned_cols=319 Identities=31% Similarity=0.534 Sum_probs=297.3
Q ss_pred cccchhHHHHHHHHHHHHHHhH-HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCccc
Q 017570 20 WLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (369)
Q Consensus 20 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~ 98 (369)
.+|+.|++|+|+|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++|+|+.+++
T Consensus 4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~ 81 (385)
T 1u7g_A 4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL 81 (385)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence 46789999999999999 9999 9999999999999999999999999999999999999999999987 7899986543
Q ss_pred chhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccce
Q 017570 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ah 178 (369)
+ +.+.+ ++ ..++++|+..+++||++||++|++|++||++||+|+.+|++|+++|++++|||++|
T Consensus 82 ~----l~~~~--~~----------~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ah 145 (385)
T 1u7g_A 82 M----LKNIE--LT----------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAH 145 (385)
T ss_dssp G----GTTCC--TT----------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHH
T ss_pred h----ccCCC--Cc----------ccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhh
Confidence 2 10110 00 01124889999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccch
Q 017570 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHI 258 (369)
Q Consensus 179 WvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~ 258 (369)
|+|++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..++
T Consensus 146 wvW~~GwL~~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~ 225 (385)
T 1u7g_A 146 MVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE 225 (385)
T ss_dssp HHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred eeEcchhhhhcceeeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccc
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999888
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhh
Q 017570 259 ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK 338 (369)
Q Consensus 259 ~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~ 338 (369)
+++++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++++++++|
T Consensus 226 ~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~ 305 (385)
T 1u7g_A 226 IAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL 305 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred ccccCccccccccchhccccee
Q 017570 339 CSLLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 339 l~~~~~IDD~~~~~~~Hg~~~~ 360 (369)
+|||||||++++|+++|+
T Consensus 306 ----l~iDD~l~a~~vHgv~Gi 323 (385)
T 1u7g_A 306 ----LRVDDPCDVFGVHGVCGI 323 (385)
T ss_dssp ----HCSCCGGGHHHHHHHHHH
T ss_pred ----CCCCCCCCCEeecccccH
Confidence 699999999999998764
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=3.4e-93 Score=712.50 Aligned_cols=310 Identities=33% Similarity=0.614 Sum_probs=289.1
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccch
Q 017570 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (369)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~ 100 (369)
+|++|++|+|+|++|| ++|||||+|+|+|++|+||++|+++||++++++++++||++||+++||++.++|||+.++++
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~- 78 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYAL- 78 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGG-
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhh-
Confidence 4679999999999999 89999999999999999999999999999999999999999999999987678999854321
Q ss_pred hhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceee
Q 017570 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWv 180 (369)
+ ... . .+...+++||++||++|++|++||++||+|+.+|++|+++|+++||||++||+
T Consensus 79 ---~-~~~--~----------------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwv 136 (399)
T 2b2h_A 79 ---L-SGV--K----------------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWL 136 (399)
T ss_dssp ---G-TTC--C----------------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ---c-cCC--C----------------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhhe
Confidence 1 100 0 01267999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhh
Q 017570 181 WGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260 (369)
Q Consensus 181 W~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~ 260 (369)
|++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..++++
T Consensus 137 W~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a 216 (399)
T 2b2h_A 137 WGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVA 216 (399)
T ss_dssp HSSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHH
T ss_pred ECchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchh
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999988899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 017570 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCS 340 (369)
Q Consensus 261 ~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~ 340 (369)
+++++||++|+++|+++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++||+++|++|++++ .+++|
T Consensus 217 ~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~k-- 292 (399)
T 2b2h_A 217 INAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIK-- 292 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHH--
Confidence 9999999999999999999999998 9999999999999999999999999999999999999999999988 44443
Q ss_pred ccCccccccccchhccccee
Q 017570 341 LLQQVSFTFLKLFYFLTIAS 360 (369)
Q Consensus 341 ~~~~IDD~~~~~~~Hg~~~~ 360 (369)
+|||||||++++|+++|+
T Consensus 293 --l~iDD~l~a~~vHgv~Gi 310 (399)
T 2b2h_A 293 --KKIDESLDAWAIHGIGGL 310 (399)
T ss_dssp --TTCCCTTCHHHHHHHHHH
T ss_pred --cCCCCCCCceeccchhhH
Confidence 799999999999999764
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=2.5e-71 Score=555.02 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=255.4
Q ss_pred HHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchhhhhccCCC
Q 017570 30 MTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRAR 109 (369)
Q Consensus 30 l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~~~~ 109 (369)
..-...| ++.+||.++++++ |||..+.+.+|++..+ ..++|++++|. ++|.. +
T Consensus 19 ~f~dv~v--Mi~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~-------~Gf~~-------------~-- 71 (407)
T 3b9w_A 19 YSINILA--MLLVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA-------NGIFG-------------H-- 71 (407)
T ss_dssp HHHHHHH--HHHHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH-------TTTTS-------------S--
T ss_pred hhhhHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc-------ccccC-------------C--
Confidence 3344445 4567999999998 9999999999999854 78899999982 12211 0
Q ss_pred CCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeecccccccc
Q 017570 110 VPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQW 189 (369)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~~GwL~~l 189 (369)
+.+|+..+++||++||++|++|++||++||+|+.+|++|++ |.+++|||.+||+|++||+...
T Consensus 72 ----------------g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~~-~~~~vY~~~~~wvw~gG~~~~~ 134 (407)
T 3b9w_A 72 ----------------ALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLAL-FIVPVYLLNEWLVLDNASGLTE 134 (407)
T ss_dssp ----------------CCCSSSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHTTCTTSSCT
T ss_pred ----------------CcchHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH-HHHHhccceeEEEeCCcchhhc
Confidence 12667789999999999999999999999999999999995 6788999999999998998777
Q ss_pred CceecCCcEEehhhhhHHHHHHHHHHcCCCCCC-CCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHHHHhH
Q 017570 190 GVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD-KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTN 268 (369)
Q Consensus 190 G~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~-~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~ 268 (369)
|++|||||++||++||++||+++++||||++|+ +++++|||++++++|+++||+||||||+| +..++.+.++++||+
T Consensus 135 G~~DfAGs~vVH~~gG~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~ 212 (407)
T 3b9w_A 135 GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTL 212 (407)
T ss_dssp TCCCTTCTTTTHHHHHHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHH
T ss_pred ceeeccCceEEEeCchHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhH
Confidence 999999999999999999999999999997652 22389999999999999999999999999 455788999999999
Q ss_pred HHHHHHHHHHHHHHHH-HcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhccccCcccc
Q 017570 269 VAAATSLLVWTCLDVI-FFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSF 347 (369)
Q Consensus 269 la~a~g~l~~~~~~~~-~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD 347 (369)
+|+++|+++|++++++ .+||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++++++++++++|+||||
T Consensus 213 lAaaag~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD 292 (407)
T 3b9w_A 213 LALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTID 292 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999987 789999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccchhcccceee
Q 017570 348 TFLKLFYFLTIASF 361 (369)
Q Consensus 348 ~~~~~~~Hg~~~~~ 361 (369)
|||++++|+++|+.
T Consensus 293 ~l~a~~vHgv~Gi~ 306 (407)
T 3b9w_A 293 TCGVHNLHGLPGLL 306 (407)
T ss_dssp TTCHHHHTTHHHHH
T ss_pred CCCCeecchHHHHH
Confidence 99999999998763
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-60 Score=485.93 Aligned_cols=285 Identities=17% Similarity=0.208 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchhhhhccC
Q 017570 28 WQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGR 107 (369)
Q Consensus 28 w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~~ 107 (369)
+-..--.-|| +..||.+|-.=+-| .-.+.+--|++..+++ ++|-++=-++- . .
T Consensus 65 Yp~fqDv~vM--i~~GfGFLmtflkr--yg~ssv~~n~l~~a~~-~Qwa~l~~g~~-~---------------------~ 117 (490)
T 3hd6_A 65 YPSFQDVHVM--VFVGFGFLMTFLQR--YGFSAVGFNFLLAAFG-IQWALLMQGWF-H---------------------F 117 (490)
T ss_dssp HHHHHHHHHH--HHTHHHHHGGGSTT--CHHHHHHHHHHHHHHH-HHHHHHHHHHT-T---------------------C
T ss_pred CccchhHHHH--HHHHHHHHHHHHHH--hccHHHHHHHHHHHHH-HHHHHHHHHHh-c---------------------c
Confidence 4445555553 33477777554433 3345666677666654 77765422221 0 0
Q ss_pred CCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeecccccc
Q 017570 108 ARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLY 187 (369)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~~GwL~ 187 (369)
. .++.+|..++++||++||++|++|++||++||+|+.+|++|+++| +++||| .||+ ||.
T Consensus 118 --~-------------~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~----~L~ 176 (490)
T 3hd6_A 118 --L-------------QDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI----LLN 176 (490)
T ss_dssp --B-------------TTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH----HHT
T ss_pred --c-------------cCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH----HHh
Confidence 0 012377889999999999999999999999999999999999885 778997 5676 688
Q ss_pred ccCceecCCcEEehhhhhHHHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHH
Q 017570 188 QWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAI 264 (369)
Q Consensus 188 ~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~---g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~ 264 (369)
++|++|||||++||++||++||+++++||||. ++++++++|||++++++|+++||+||||||+|++.. ++.+.+++
T Consensus 177 ~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~~~~~a~ 255 (490)
T 3hd6_A 177 LLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GDSQHRAA 255 (490)
T ss_dssp TSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HHHHHHHH
T ss_pred ccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-chHHHHHH
Confidence 99999999999999999999999999999993 445667889999999999999999999999998764 56789999
Q ss_pred HHhHHHHHHHHHHHHHHHHH--HcCCCcHHHhhhhhhcccccccccCC-CCChHHHHHHHHHHhHHHHHHHHHHHhhccc
Q 017570 265 LNTNVAAATSLLVWTCLDVI--FFGKPSVIGAVQGMMTGLVCITPGAG-LVQSWAAIVMGILSGSIPWVTMMILHKKCSL 341 (369)
Q Consensus 265 ~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~laGlVaIta~a~-~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~ 341 (369)
+||++|+++|+++|++++++ .+||+|+.+++||+|||||||||+|+ +++||+|++||+++|++|+++++++++++++
T Consensus 256 ~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~ 335 (490)
T 3hd6_A 256 INTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLES 335 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999986 57899999999999999999999999 6999999999999999999999988777777
Q ss_pred cCccccccccchhcccceee
Q 017570 342 LQQVSFTFLKLFYFLTIASF 361 (369)
Q Consensus 342 ~~~IDD~~~~~~~Hg~~~~~ 361 (369)
|+|||||||++++|+++|+.
T Consensus 336 kl~iDD~lgv~~vHGv~Gi~ 355 (490)
T 3hd6_A 336 RLHIQDTCGINNLHGIPGII 355 (490)
T ss_dssp HHCCCCTTCHHHHTHHHHHH
T ss_pred HCCCCccccchHHhhHHHHH
Confidence 89999999999999998753
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=71.35 E-value=37 Score=33.60 Aligned_cols=144 Identities=17% Similarity=0.065 Sum_probs=88.3
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccch
Q 017570 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG 100 (369)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~ 100 (369)
+..-|..+.++.+.+. ++ |-.-|.+|+.....+.++++...++.+.+.+.|.++-|-+-.|+. +.
T Consensus 172 ~~~hn~~~~~lGt~lL-W~---GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~--------~~--- 236 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WL---FWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA--------SI--- 236 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HH---HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------CH---
T ss_pred CCCCCHHHHHHHHHHH-HH---HHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--------CH---
Confidence 4456667777777765 54 555568886555556667777788999999999888765433321 10
Q ss_pred hhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceee
Q 017570 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL 180 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWv 180 (369)
..+.+ .+.+-.....+-++-+++..-++..++ +++++.....++
T Consensus 237 --------------------------------~~~~n---G~LAGLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l 280 (407)
T 3b9w_A 237 --------------------------------VDMAN---AALAGGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI 280 (407)
T ss_dssp --------------------------------HHHHH---HTTHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH
T ss_pred --------------------------------HHHHH---hhhhhhheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH
Confidence 00001 122222223333455777777777766 555443221110
Q ss_pred eccccc-cccCceecCCcEEehhhhhHHHHHHHHHHcC
Q 017570 181 WGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVGP 217 (369)
Q Consensus 181 W~~GwL-~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGp 217 (369)
.-+| ++++..|--|.-.||..+|+.|....-+...
T Consensus 281 --~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~ 316 (407)
T 3b9w_A 281 --QPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVP 316 (407)
T ss_dssp --HHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHST
T ss_pred --HHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHcc
Confidence 1123 4589999999999999999999888766643
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=48.74 E-value=1.9e+02 Score=28.38 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=85.9
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhh--HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCccc
Q 017570 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKW--AVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (369)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn--~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~ 98 (369)
+..-|..+.++.+.+. ++--+| |++|+.-..| +..+++...++.+.+.+.|.++-|-. |+. +
T Consensus 182 ~~~hn~~~~~lG~~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~--------~-- 245 (399)
T 2b2h_A 182 IEPHSIPLTLIGAALL-WFGWFG---FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP--------G-- 245 (399)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC--------C--
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC--------C--
Confidence 3455667778877776 554444 6666554433 45566666788899999998887654 321 1
Q ss_pred chhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccce
Q 017570 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ah 178 (369)
. ....+ .+.+-.....+-++-+++..-++..++ +++++....
T Consensus 246 -----------------------------~----~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~- 287 (399)
T 2b2h_A 246 -----------------------------S----LGIVS---GAIAGLAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM- 287 (399)
T ss_dssp -----------------------------H----HHHHH---HHHHHHHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH-
T ss_pred -----------------------------H----HHHHH---HHHHhhhhhccccccCCHHHHHHHHHH-HHHHHHHHH-
Confidence 0 00111 222222233444466778877887776 555443222
Q ss_pred eeeccccccccCceecCCcEEehhhhhHHHHHHHHHHc
Q 017570 179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (369)
Q Consensus 179 WvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lG 216 (369)
+ ..++++..|--|.-.||..+|..|....-+..
T Consensus 288 ~-----l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 288 D-----FRIKKKIDESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp H-----HHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred H-----HHHHcCCCCCCCceeccchhhHHHHHHHHHHc
Confidence 1 24679999999999999999999988776664
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=36.23 E-value=2.1e+02 Score=29.00 Aligned_cols=141 Identities=15% Similarity=0.088 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCcccCCcccch
Q 017570 23 KGDSAWQMTASTLVGIQSMPGLLIIYASIVKK-KWAVNSAFMVLYAFAAVLICWVLVCYRMA-FGDQLLPFWGKGAPALG 100 (369)
Q Consensus 23 ~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~-kn~~~~l~~~l~~~~v~~i~w~~~Gy~la-fG~~~~~fiG~~~~~~~ 100 (369)
.-|..+.++.+.+. ++--+| |++|+... ..+..+++...++.+.+.+.|.++-|-+. .|+ .+.
T Consensus 220 ~hn~~~a~LGt~lL-W~GWfG---FN~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK--------~s~--- 284 (490)
T 3hd6_A 220 YQSDLFAMIGTLFL-WMYWPS---FNSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGK--------LDM--- 284 (490)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH---HTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC--------CCH---
T ss_pred CCCHHHHHHHHHHH-HHHHHh---hchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCH---
Confidence 45667777777766 655555 56887753 33445666667888999999988765431 221 100
Q ss_pred hhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhc-ccchhHHHHHHHHHHHhhhccccee
Q 017570 101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLG-RMNIRAWMAFVPLWLMFSYTVGAFS 179 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavae-R~~~~~~~i~~~l~~~~vYp~~ahW 179 (369)
..+.+ ++.+-....++-++ -.++..-++..++ +++++.....+
T Consensus 285 --------------------------------~~~~n---G~LAGLVAIT~~a~~~v~P~~AliIG~i-aG~i~~~~~~~ 328 (490)
T 3hd6_A 285 --------------------------------VHIQN---ATLAGGVAVGTAAEMMLMPYGALIIGFV-CGIISTLGFVY 328 (490)
T ss_dssp --------------------------------HHHHH---GGGHHHHHTTTTTTTCSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred --------------------------------HHhhh---ceeeeEEEEccCcccccCHHHHHHHHHH-HHHHHHHHHHH
Confidence 00000 11111222223334 2456666666655 44443321111
Q ss_pred eeccccc-cccCceecCCcEEehhhhhHHHHHHHHHHc
Q 017570 180 LWGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVG 216 (369)
Q Consensus 180 vW~~GwL-~~lG~~DfaGs~vVH~~gG~~aL~~a~~lG 216 (369)
. .-+| .+++..|--|.-.||..+|+.|....-+..
T Consensus 329 l--~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 329 L--TPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp H--HHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred h--HHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence 0 0123 578999999999999999999987765544
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=34.40 E-value=3.3e+02 Score=26.46 Aligned_cols=139 Identities=15% Similarity=0.117 Sum_probs=86.7
Q ss_pred ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChh--hHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCccc
Q 017570 21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKK--WAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA 98 (369)
Q Consensus 21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~k--n~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~ 98 (369)
+..-|..+.++.+.+. ++=-+| |++|+.-.. .+..+++...++.+.+.+.|.++-|-. .|+ .+
T Consensus 193 ~~~hn~~~~~lGt~lL-W~GWfG---FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk--------~~-- 257 (385)
T 1u7g_A 193 FKPHNLPMVFTGTAIL-YIGWFG---FNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGL--------PS-- 257 (385)
T ss_dssp CCGGGHHHHHHHHHHH-HHHHHH---HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSS--------CC--
T ss_pred CCCCCHHHHHHHHHHH-HHHHhh---hcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCC--------CC--
Confidence 4456777888887776 654444 566654433 344566666788889999998876541 121 10
Q ss_pred chhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccce
Q 017570 99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF 178 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ah 178 (369)
. .-..+ .+.+-.....+-++-+++..-++..++ +++++.....
T Consensus 258 -----------------------------~----~~~~n---G~lAGLVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~~ 300 (385)
T 1u7g_A 258 -----------------------------L----LGACS---GAIAGLVGVTPACGYIGVGGALIIGVV-AGLAGLWGVT 300 (385)
T ss_dssp -----------------------------H----HHHHH---HHHHHHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHH
T ss_pred -----------------------------H----HHHHH---HHHHhhhhhccCCCCCCHHHHHHHHhH-HHHHHHHHHH
Confidence 0 00111 222222233444467888888888877 5555433222
Q ss_pred eeeccccc-cccCceecCCcEEehhhhhHHHHHHHHHHcC
Q 017570 179 SLWGGGFL-YQWGVIDYSGGYVIHVSSGIAGLTAAYWVGP 217 (369)
Q Consensus 179 WvW~~GwL-~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGp 217 (369)
+| ++++..|--+...||..+|..|....-+...
T Consensus 301 ------~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 301 ------MLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp ------HHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred ------HHHHhCCCCCCCCCEeecccccHHHHHHHHHhcc
Confidence 24 4689999999999999999999888766654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.26 E-value=1.7e+02 Score=19.81 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=11.1
Q ss_pred CChHHHHHHHHHHhHHH
Q 017570 312 VQSWAAIVMGILSGSIP 328 (369)
Q Consensus 312 v~p~~A~iiG~iag~v~ 328 (369)
-++-.++..|+++|++.
T Consensus 6 ~s~~~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFI 22 (44)
T ss_dssp SCSSHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHH
Confidence 35566677777777654
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=12.10 E-value=1.6e+02 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHhHHHHH
Q 017570 312 VQSWAAIVMGILSGSIPWV 330 (369)
Q Consensus 312 v~p~~A~iiG~iag~v~~~ 330 (369)
-.||.-+++++++|++...
T Consensus 6 ~vp~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLM 24 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHH
Confidence 3578888899999987544
Done!