RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017570
         (369 letters)



>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score =  141 bits (355), Expect = 4e-39
 Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 17/319 (5%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
            +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+  Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +A G+    F       L    L                             V FQ +F
Sbjct: 63  SLASGEGNNFFGNINWLMLKNIELTAVM-----------------GSIYQYIHVAFQGSF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+
Sbjct: 106 ACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVV 165

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+  +
Sbjct: 166 HINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIA 225

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
           ++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G +    A+++
Sbjct: 226 ALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII 285

Query: 321 GILSGSIPWVTMMILHKKC 339
           G+++G      + +L +  
Sbjct: 286 GVVAGLAGLWGVTMLKRLL 304


>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
           OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 374

 Score = 28.9 bits (65), Expect = 1.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 205 GIAGLTAAYWVGPRLKSDKERFPPN----NVLLMLAGAG-LLW 242
           G+A LT+ +  GP   S    + P     N L + AG G  +W
Sbjct: 224 GVAPLTSMFLFGPNQPSPANNYRPELHDSNGLSIHAGNGEWIW 266


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,417,290
Number of extensions: 64895
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 24
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)