BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017573
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/370 (74%), Positives = 313/370 (84%), Gaps = 1/370 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L E+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTATF ILQQ++
Sbjct: 19 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL 78
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVV 119
L QALVLAPTRELAQQI+KV+ ALGDY+G HAC+GGT+VR E Q++ H++V
Sbjct: 79 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 138
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
GTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L + QV + SATM
Sbjct: 139 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 198
Query: 180 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239
P + LE+T+KFM P+RILVK++ELTLEGI+QFY+NVE+EEWKL+TLCDLYETL ITQ+V
Sbjct: 199 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV 258
Query: 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299
IF+NTRRKVDWLT+KM +RD TVSA HGDMDQ RD+IMREFRSGSSRVLITTDLLARGI
Sbjct: 259 IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 318
Query: 300 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359
DVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN IE
Sbjct: 319 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIE 378
Query: 360 ELPSNVADLL 369
E+P NVADL+
Sbjct: 379 EMPLNVADLI 388
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/370 (74%), Positives = 313/370 (84%), Gaps = 1/370 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L E+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTATF ILQQ++
Sbjct: 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL 104
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVV 119
L QALVLAPTRELAQQI+KV+ ALGDY+G HAC+GGT+VR E Q++ H++V
Sbjct: 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 164
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
GTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L + QV + SATM
Sbjct: 165 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 224
Query: 180 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239
P + LE+T+KFM P+RILVK++ELTLEGI+QFY+NVE+EEWKL+TLCDLYETL ITQ+V
Sbjct: 225 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV 284
Query: 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299
IF+NTRRKVDWLT+KM +RD TVSA HGDMDQ RD+IMREFRSGSSRVLITTDLLARGI
Sbjct: 285 IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344
Query: 300 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359
DVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN IE
Sbjct: 345 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIE 404
Query: 360 ELPSNVADLL 369
E+P NVADL+
Sbjct: 405 EMPLNVADLI 414
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/369 (68%), Positives = 302/369 (81%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G HVV G
Sbjct: 103 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFDM+RR+SLR IKM VLDEADEML++GFK+QIYD+++ LP QV + SAT+P
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 222
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
E LE+T KFM P+RILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VI
Sbjct: 223 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 282
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NT+RKVDWLT+KMR + TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
V QVSL+INYDLP E Y+HRIGRSGR+GRKGVAINFV DD R+L DI+++Y+ I+E
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 402
Query: 361 LPSNVADLL 369
+P NVADL+
Sbjct: 403 MPMNVADLI 411
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/369 (68%), Positives = 302/369 (81%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G HVV G
Sbjct: 103 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFDM+RR+SLR IKM VLDEADEML++GFK+QIYD+++ LP QV + SAT+P
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 222
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
E LE+T KFM P+RILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VI
Sbjct: 223 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 282
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NT+RKVDWLT+KMR + TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
V QVSL+INYDLP E Y+HRIGRSGR+GRKGVAINFV DD R+L DI+++Y+ I+E
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 402
Query: 361 LPSNVADLL 369
+P NVADL+
Sbjct: 403 MPMNVADLI 411
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/369 (68%), Positives = 302/369 (81%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD
Sbjct: 42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 101
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G HVV G
Sbjct: 102 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 161
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFDM+RR+SLR IKM VLDEADEML++GFK+QIYD+++ LP QV + SAT+P
Sbjct: 162 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
E LE+T KFM P+RILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VI
Sbjct: 222 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 281
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NT+RKVDWLT+KMR + TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+D
Sbjct: 282 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
V QVSL+INYDLP E Y+HRIGRSGR+GRKGVAINFV DD R+L DI+++Y+ I+E
Sbjct: 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 401
Query: 361 LPSNVADLL 369
+P NVADL+
Sbjct: 402 MPMNVADLI 410
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 520 bits (1339), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/369 (68%), Positives = 302/369 (81%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD
Sbjct: 21 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 80
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G HVV G
Sbjct: 81 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 140
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFDM+RR+SLR IKM VLDEADEML++GFK+QIYD+++ LP QV + SAT+P
Sbjct: 141 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 200
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
E LE+T KFM P+RILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VI
Sbjct: 201 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 260
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NT+RKVDWLT+KMR + TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+D
Sbjct: 261 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 320
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
V QVSL+INYDLP E Y+HRIGRSGR+GRKGVAINFV DD R+L DI+++Y+ I+E
Sbjct: 321 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 380
Query: 361 LPSNVADLL 369
+P NVADL+
Sbjct: 381 MPMNVADLI 389
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 302/369 (81%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI 65
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ + QAL+LAPTRELA Q++K + ALGDY+ V+ HAC+GGT+V ED R L G HVV G
Sbjct: 66 QVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAG 125
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFDM+RR+SLR IKM VLDEADEML++GFK+QIYD+++ LP QV + SAT+P
Sbjct: 126 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 185
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
E LE+T KFM P+RILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VI
Sbjct: 186 HEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 245
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NT+RKVDWLT+KMR + TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+D
Sbjct: 246 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 305
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
V QVSL+INYDLP E Y+HRIGRSGR+GRKGVA+NFV DD R+L DI+++Y+ I+E
Sbjct: 306 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDE 365
Query: 361 LPSNVADLL 369
+P NVADL+
Sbjct: 366 MPMNVADLI 374
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 302/369 (81%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI 65
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ + QAL+LAPTRELA Q++K + ALGDY+ V+ HAC+GGT+V ED R L G HVV G
Sbjct: 66 QVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 125
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFDM+RR+SLR IKM VLDEADEML++GFK+QIYD+++ LP QV + SAT+P
Sbjct: 126 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 185
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
E LE+T KFM P+RILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL ITQ+VI
Sbjct: 186 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 245
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NT+RKVDWLT+KMR + TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+D
Sbjct: 246 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 305
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
V QVSL+INYDLP E Y+HRIGRSGR+GRKGVA+NFV DD R+L DI+++Y+ I+E
Sbjct: 306 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDE 365
Query: 361 LPSNVADLL 369
+P NVADL+
Sbjct: 366 MPMNVADLI 374
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/369 (65%), Positives = 292/369 (79%), Gaps = 1/369 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQSGTGKT TF LQ++D
Sbjct: 27 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 86
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ QAL+LAPTRELA QI+KV+ AL ++ +KVHAC+GGTS ED L+ +VVG
Sbjct: 87 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVG 145
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFD ++R+ R D IKMF+LDEADEMLS GFK+QIY IF LLP QV + SATMP
Sbjct: 146 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 205
Query: 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240
+ LE+T KFM PVRILVK+DELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VI
Sbjct: 206 NDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVI 265
Query: 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
F NTRRKV+ LT K+R+ TVSA + D+ Q RD IM+EFRSGSSR+LI+TDLLARGID
Sbjct: 266 FCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 325
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360
VQQVSLVINYDLP ENY+HRIGR GRFGRKGVAINFVT +D + +++KFY+ IEE
Sbjct: 326 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 385
Query: 361 LPSNVADLL 369
LPS++A LL
Sbjct: 386 LPSDIATLL 394
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/367 (63%), Positives = 282/367 (76%), Gaps = 1/367 (0%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L ENLLRG++ YGFE+PSAIQQR I P +G DV+ QAQSGTGKT TF LQ++D +
Sbjct: 28 LDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV 87
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTP 122
QAL LAPTRELA QI+KV+ AL + +KVHAC+GGTS ED L+ +VVGTP
Sbjct: 88 KAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA-QIVVGTP 146
Query: 123 GRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPE 182
GRVFD ++R+ R D IK F+LDEADE LS GFK+QIY IF LLP QV + SAT P +
Sbjct: 147 GRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXPND 206
Query: 183 ALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 242
LE+T KF PVRILVK+DELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF
Sbjct: 207 VLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC 266
Query: 243 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 302
NTRRKV+ LT K+R+ TVSA + D+ Q RD I +EFRSGSSR+LI+TDLLARGIDVQ
Sbjct: 267 NTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQ 326
Query: 303 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362
QVSLVINYDLP ENY+HRIGR GRFGRKGVAINFVT +D +++KFY+ IEELP
Sbjct: 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELEKFYSTQIEELP 386
Query: 363 SNVADLL 369
S++A LL
Sbjct: 387 SDIATLL 393
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 2/363 (0%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L+++ L
Sbjct: 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL 87
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTP 122
+ QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L VH++VGTP
Sbjct: 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTP 147
Query: 123 GRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPE 182
GRV D+ R+ +F++DEAD+MLSR FK I I LP Q +FSAT P
Sbjct: 148 GRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLT 207
Query: 183 ALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 242
E K ++KP I + +ELTL+GI Q+Y VE E KL L L+ L I Q++IF
Sbjct: 208 VKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKLQINQAIIFC 265
Query: 243 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 302
N+ +V+ L K+ ++ +H M Q R+ + EFR G R L+ +DLL RGID+Q
Sbjct: 266 NSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQ 325
Query: 303 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362
V++VIN+D P E YLHRIGRSGRFG G+AIN + +D L+ I++ I +P
Sbjct: 326 AVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385
Query: 363 SNV 365
+ +
Sbjct: 386 ATI 388
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/203 (69%), Positives = 165/203 (81%), Gaps = 1/203 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L+E+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTATF ILQQL+
Sbjct: 35 MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI 94
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVV 119
+ QALVLAPTRELAQQI+KV+ ALGDY+G HAC+GGT+VR + + LQA H+VV
Sbjct: 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVV 154
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
GTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L +QV + SATM
Sbjct: 155 GTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214
Query: 180 PPEALEITRKFMNKPVRILVKRD 202
P + LE+T+KFM P+RILVK++
Sbjct: 215 PTDVLEVTKKFMRDPIRILVKKE 237
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L E+LLRGIYAYGFE PSAIQQR I+P G DVI QAQSGTG TATF ILQQ++
Sbjct: 20 MNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQIEL 79
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVV 119
L QALVLAPTRELAQQI+ V+ ALGDY+G HAC+GGT+VR + + LQ H++V
Sbjct: 80 DLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIV 139
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
GTPGRVFDML R+ L P YI MFVLDEADEMLSRGF DQIYDIFQ L + QV + SATM
Sbjct: 140 GTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLSATM 199
Query: 180 PPEALEITRKFMNKPVRILV 199
P + LE+T FM P+RILV
Sbjct: 200 PSDVLEVTXXFMRDPIRILV 219
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 222/364 (60%), Gaps = 14/364 (3%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQL 58
+GL LL+GIYA F+KPS IQ+R + ++I Q+QSGTGKTA F +L ++
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 59 DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVV 118
+ QA+ LAP+RELA+Q +V++ +G + + V + + Q V+
Sbjct: 70 NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ----INAQVI 125
Query: 119 VGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSA 177
VGTPG V D++RR+ ++ IK+FVLDEAD ML + G DQ + + LP Q+ +FSA
Sbjct: 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185
Query: 178 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ 237
T + +K + + ++ +E+ ++ IKQ Y++ + E K + L +LY + I
Sbjct: 186 TFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGS 245
Query: 238 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 297
S+IFV T++ + L K++S H VS HGD+ RD ++ +FR G S+VLITT++LAR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 298 GIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDI 350
GID+ VS+V+NYDLPT P Y+HRIGR+GRFGRKGVAI+FV ++ +L I
Sbjct: 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 365
Query: 351 QKFY 354
QK++
Sbjct: 366 QKYF 369
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 267 bits (682), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 222/364 (60%), Gaps = 14/364 (3%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQL 58
+GL LL+GIYA F+KPS IQ+R + ++I Q+QSGTGKTA F +L ++
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 59 DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVV 118
+ QA+ LAP+RELA+Q +V++ +G + + V + + Q V+
Sbjct: 70 NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ----INAQVI 125
Query: 119 VGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSA 177
VGTPG V D++RR+ ++ IK+FVLDEAD ML + G DQ + + LP Q+ +FSA
Sbjct: 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185
Query: 178 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ 237
T + +K + + ++ +E+ ++ IKQ Y++ + E K + L +LY + I
Sbjct: 186 TFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGS 245
Query: 238 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 297
S+IFV T++ + L K++S H VS HGD+ RD ++ +FR G S+VLITT++LAR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 298 GIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDI 350
GID+ VS+V+NYDLPT P Y+HRIGR+GRFGRKGVAI+FV ++ +L I
Sbjct: 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 365
Query: 351 QKFY 354
QK++
Sbjct: 366 QKYF 369
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 260 bits (665), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/207 (62%), Positives = 157/207 (75%), Gaps = 1/207 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQSGTGKT TF LQ++D
Sbjct: 19 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 78
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ QAL+LAPTRELA QI+KV+ AL ++ +KVHAC+GGTS ED L+ +VVG
Sbjct: 79 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVG 137
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFD ++R+ R D IKMF+LDEADEMLS GFK+QIY IF LLP QV + SATMP
Sbjct: 138 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197
Query: 181 PEALEITRKFMNKPVRILVKRDELTLE 207
+ LE+T KFM PVRILVK+DELTLE
Sbjct: 198 NDVLEVTTKFMRNPVRILVKKDELTLE 224
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 226/378 (59%), Gaps = 17/378 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLD 59
L+ LL+G+YA GF +PS IQ+ + P ++I Q+QSGTGKTA F +L Q++
Sbjct: 99 LKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVV 118
Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIV 214
Query: 119 VGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFS 176
+GTPG V D + + + P IK+FVLDEAD M++ +G +DQ I ++LP Q+ +FS
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 274
Query: 177 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236
AT + +K + P I +KR+E TL+ IKQ+YV + K + LC+LY + I
Sbjct: 275 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIA 334
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
Q++IF +TR+ WL ++ H V+ G+M R ++ FR G +VL+TT++ A
Sbjct: 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 394
Query: 297 RGIDVQQVSLVINYDLPT----QPEN--YLHRIGRSGRFGRKGVAINFV-TRDDERMLFD 349
RGIDV+QVS+VIN+DLP P+N YLHRIGR+GRFG++G+A+N V ++ +L
Sbjct: 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 454
Query: 350 IQKFYNVVIEELPSNVAD 367
IQ+ +N IE L ++ D
Sbjct: 455 IQEHFNKKIERLDTDDLD 472
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 226/378 (59%), Gaps = 17/378 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLD 59
L+ LL+G+YA GF +PS IQ+ + P ++I Q+QSGTGKTA F +L Q++
Sbjct: 48 LKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 106
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVV 118
Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V
Sbjct: 107 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIV 163
Query: 119 VGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFS 176
+GTPG V D + + + P IK+FVLDEAD M++ +G +DQ I ++LP Q+ +FS
Sbjct: 164 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 223
Query: 177 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236
AT + +K + P I +KR+E TL+ IKQ+YV + K + LC+LY + I
Sbjct: 224 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIA 283
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
Q++IF +TR+ WL ++ H V+ G+M R ++ FR G +VL+TT++ A
Sbjct: 284 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 343
Query: 297 RGIDVQQVSLVINYDLPT----QPEN--YLHRIGRSGRFGRKGVAINFV-TRDDERMLFD 349
RGIDV+QVS+VIN+DLP P+N YLHRIGR+GRFG++G+A+N V ++ +L
Sbjct: 344 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 403
Query: 350 IQKFYNVVIEELPSNVAD 367
IQ+ +N IE L ++ D
Sbjct: 404 IQEHFNKKIERLDTDDLD 421
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 217/368 (58%), Gaps = 6/368 (1%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ LLR I GFE PS +Q I G+DV+ QA+SG GKTA F LQQL+
Sbjct: 14 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 73
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVG 120
Q LV+ TRELA QI K Y+ VKV GG S+++D+ +L+ H+VVG
Sbjct: 74 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 133
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR+ + R +SL +IK F+LDEAD+ML + + + +IF++ P + QV +FSAT+
Sbjct: 134 TPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 193
Query: 180 PPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 238
E + RKFM P+ I V + +LTL G++Q+YV + K+ K L DL + L Q
Sbjct: 194 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQV 252
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
VIFV + ++ L + ++ A H M Q R ++F+ R+L+ T+L RG
Sbjct: 253 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 312
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVV 357
+D+++V++ NYD+P + YLHR+ R+GRFG KG+AI FV+ +D ++L D+Q + V
Sbjct: 313 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 372
Query: 358 IEELPSNV 365
I ELP +
Sbjct: 373 ISELPDEI 380
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 226/378 (59%), Gaps = 17/378 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLD 59
L+ LL+G+YA GF +PS IQ+ + P ++I Q+QSGTGKTA F +L Q++
Sbjct: 69 LKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 127
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVV 118
Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V
Sbjct: 128 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIV 184
Query: 119 VGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFS 176
+GTPG V D + + + P IK+FVLDEAD M+ ++G +DQ I ++LP Q+ +FS
Sbjct: 185 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 244
Query: 177 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236
AT + +K + P I +KR+E TL+ IKQ+YV + K + LC+LY + I
Sbjct: 245 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIA 304
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
Q++IF +TR+ WL ++ H V+ G+M R ++ FR G +VL+TT++ A
Sbjct: 305 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 364
Query: 297 RGIDVQQVSLVINYDLPT----QPEN--YLHRIGRSGRFGRKGVAINFV-TRDDERMLFD 349
RGIDV+QVS+VIN+DLP P+N YLHRIGR+GRFG++G+A+N V ++ +L
Sbjct: 365 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 424
Query: 350 IQKFYNVVIEELPSNVAD 367
IQ+ +N IE L ++ D
Sbjct: 425 IQEHFNKKIERLDTDDLD 442
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 226/378 (59%), Gaps = 17/378 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLD 59
L+ LL+G+YA GF +PS IQ+ + P ++I Q+QSGTGKTA F +L Q++
Sbjct: 32 LKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 90
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVV 118
Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V
Sbjct: 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIV 147
Query: 119 VGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFS 176
+GTPG V D + + + P IK+FVLDEAD M+ ++G +DQ I ++LP Q+ +FS
Sbjct: 148 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 207
Query: 177 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236
AT + +K + P I +KR+E TL+ IKQ+YV + K + LC+LY + I
Sbjct: 208 ATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIA 267
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
Q++IF +TR+ WL ++ H V+ G+M R ++ FR G +VL+TT++ A
Sbjct: 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327
Query: 297 RGIDVQQVSLVINYDLPT----QPEN--YLHRIGRSGRFGRKGVAINFV-TRDDERMLFD 349
RGIDV+QVS+VIN+DLP P+N YLHRIGR+GRFG++G+A+N V ++ +L
Sbjct: 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 387
Query: 350 IQKFYNVVIEELPSNVAD 367
IQ+ +N IE L ++ D
Sbjct: 388 IQEHFNKKIERLDTDDLD 405
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 216/368 (58%), Gaps = 6/368 (1%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ LLR I GFE PS +Q I G+DV+ QA+SG GKTA F LQQL+
Sbjct: 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 74
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVG 120
Q LV+ TRELA QI K Y+ VKV GG S+++D+ +L+ H+VVG
Sbjct: 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 134
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR+ + R +SL +IK F+LDE D+ML + + + +IF++ P + QV +FSAT+
Sbjct: 135 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 194
Query: 180 PPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 238
E + RKFM P+ I V + +LTL G++Q+YV + K+ K L DL + L Q
Sbjct: 195 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQV 253
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
VIFV + ++ L + ++ A H M Q R ++F+ R+L+ T+L RG
Sbjct: 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVV 357
+D+++V++ NYD+P + YLHR+ R+GRFG KG+AI FV+ +D ++L D+Q + V
Sbjct: 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 373
Query: 358 IEELPSNV 365
I ELP +
Sbjct: 374 ISELPDEI 381
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 216/368 (58%), Gaps = 6/368 (1%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ LLR I GFE PS +Q I G+DV+ QA+SG GKTA F LQQL+
Sbjct: 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 74
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVG 120
Q LV+ TRELA QI K Y+ VKV GG S+++D+ +L+ H+VVG
Sbjct: 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 134
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR+ + R +SL +IK F+LDE D+ML + + + +IF++ P + QV +FSAT+
Sbjct: 135 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 194
Query: 180 PPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 238
E + RKFM P+ I V + +LTL G++Q+YV + K+ K L DL + L Q
Sbjct: 195 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQV 253
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
VIFV + ++ L + ++ A H M Q R ++F+ R+L+ T+L RG
Sbjct: 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVV 357
+D+++V++ NYD+P + YLHR+ R+GRFG KG+AI FV+ +D ++L D+Q + V
Sbjct: 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 373
Query: 358 IEELPSNV 365
I ELP +
Sbjct: 374 ISELPDEI 381
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 207/338 (61%), Gaps = 12/338 (3%)
Query: 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94
++I Q+QSGTGKTA F +L ++D + + QA+ LAP+RELA+QI V+ +G Y VK
Sbjct: 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219
Query: 95 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR- 153
+ SV + +I +V+GTPG V D+++R+ L IK+FVLDEAD ML +
Sbjct: 220 TAFGIKD-SVPKGAKI---DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275
Query: 154 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY 213
G DQ I LLP Q+ +FSAT + +F I +K +EL++EGIKQ Y
Sbjct: 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLY 335
Query: 214 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 273
++ + EE K L +LY L I QS+IF + + + +M + HTV+ G+++
Sbjct: 336 MDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQ 395
Query: 274 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSG 327
RD IM FR G+S+VL+TT+++ARGIDV QV+LV+NYD+P P+ YLHRIGR+G
Sbjct: 396 RDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTG 455
Query: 328 RFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSN 364
RFGR GV+INFV + + IQ+++ I +P++
Sbjct: 456 RFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 148/199 (74%), Gaps = 1/199 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
M L E LLRG++ YGFE+PSAIQQR I+P +G DV+ QAQSGTGKT TF LQ++D
Sbjct: 26 MELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 85
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ QAL+LAPTRELA QI+KV+ AL ++ +KVHAC+GGTS ED L+ +VVG
Sbjct: 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVG 144
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180
TPGRVFD ++R+ R D IKMF+LDEADEMLS GFK+QIY IF LLP QV + SATMP
Sbjct: 145 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204
Query: 181 PEALEITRKFMNKPVRILV 199
+ LE+T KFM PVRILV
Sbjct: 205 NDVLEVTTKFMRNPVRILV 223
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 197/353 (55%), Gaps = 9/353 (2%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLD 59
+ L +N+L I GFEKP+ IQ + I F +++ QA++G+GKTA+F +++ ++
Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN 70
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVV 119
+A++L PTRELA Q+ + +L +K+ GG ++ + L+ ++VV
Sbjct: 71 EN-NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVV 128
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
GTPGR+ D + R +L +K F+LDEADE L+ GF + I ++ +FSAT
Sbjct: 129 GTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATX 188
Query: 180 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239
P E L + +K+ I K + I+Q YV V + E + E LC L + +
Sbjct: 189 PREILNLAKKYXGDYSFIKAKINA----NIEQSYVEVNENE-RFEALCRLLKNKEFY-GL 242
Query: 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299
+F T+R L +R A HGD+ Q+ R+ ++R F+ R+LI TD+ +RGI
Sbjct: 243 VFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGI 302
Query: 300 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 352
DV ++ VINY LP PE+Y HRIGR+GR G+KG AI+ + R + + L I++
Sbjct: 303 DVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/164 (68%), Positives = 137/164 (83%)
Query: 206 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSAT 265
LEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+ TVSA
Sbjct: 1 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60
Query: 266 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 325
+ D+ Q RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP ENY+HRIGR
Sbjct: 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120
Query: 326 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369
GRFGRKGVAINFVT +D + +++KFY+ IEELPS++A LL
Sbjct: 121 GGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 164
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 22/375 (5%)
Query: 16 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL----------------D 59
+ +P+ +Q+ I + D++ AQ+G+GKTA F IL Q+
Sbjct: 35 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94
Query: 60 YGLVQCQ--ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 117
YG + +LVLAPTRELA QI + R V+ GG + + R L+ G H+
Sbjct: 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 154
Query: 118 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ--LLPAK--VQVG 173
+V TPGR+ DM+ R + D+ K VLDEAD ML GF+ QI I + +P K
Sbjct: 155 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 214
Query: 174 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 233
+FSAT P E + R F+++ + + V R T E I Q V VE+ + + L L T
Sbjct: 215 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATG 274
Query: 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 293
+ +++FV T++ D L D + + ++ HGD Q R+ + +FRSG S +L+ T
Sbjct: 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334
Query: 294 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 353
+ ARG+D+ V VIN+DLP+ E Y+HRIGR+GR G G+A +F + + D+
Sbjct: 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394
Query: 354 YNVVIEELPSNVADL 368
+E+PS + ++
Sbjct: 395 LVEAKQEVPSWLENM 409
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 190/352 (53%), Gaps = 9/352 (2%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---- 58
L++ ++ + G++ P+ IQ+ I G D++ AQ+G+GKTA F IL +L
Sbjct: 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122
Query: 59 -DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 117
+ L + Q ++++PTRELA QI R +K+ GGTS R + G HV
Sbjct: 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHV 182
Query: 118 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV--QVGVF 175
V+ TPGR+ D + R + + + VLDEAD ML GF + + I + + Q +F
Sbjct: 183 VIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMF 242
Query: 176 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 235
SAT P E + +F+ V + + +KQ V K + + + L E
Sbjct: 243 SATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG 302
Query: 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 295
T ++FV T+R D+L + ++ ++ HGD Q+ R+ +R+F++GS +VLI T +
Sbjct: 303 T--IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 360
Query: 296 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347
+RG+D++ + VINYD+P++ ++Y+HRIGR+GR G G A +F + +R +
Sbjct: 361 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 183/340 (53%), Gaps = 23/340 (6%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
+ E + + I GF+ + +Q + I +G +V+ +A++G+GKTA + IL+
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------ 54
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILQAGVHVVVGT 121
+ ++LV+ PTREL +Q+ +R +G Y+ KV GG + R+ A +VV T
Sbjct: 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNA--DIVVAT 112
Query: 122 PGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 181
PGR+ D+ + + ++ ++DEAD M GF D I I + G+FSAT+P
Sbjct: 113 PGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPE 172
Query: 182 EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW--KLETLCDLYETLAITQSV 239
E ++ + F+ I + L ++ +V+V K++W K++ L + + I
Sbjct: 173 EIRKVVKDFITNYEEI---EACIGLANVEHKFVHV-KDDWRSKVQALRENKDKGVI---- 224
Query: 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299
+FV TR +V L +R D+ + GD+ Q+ R+ + FR G +LITTD+ +RG+
Sbjct: 225 VFVRTRNRVAKL---VRLFDNAIE-LRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGL 280
Query: 300 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 339
D+ V VIN+D P Y+HRIGR+GR GRKG AI F+
Sbjct: 281 DIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 200/387 (51%), Gaps = 31/387 (8%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPF--CKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
L + + + I F + +QQ+ I P + DVI +A++GTGKT F I Q L
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 61 GLVQCQ----ALVLAPTRELAQQIEKVMRALGDY-LGVKVHACV---GGTSVRED-QRIL 111
Q A+++APTR+LA QIE ++ + D G+K +ACV GGT R ++
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 147
Query: 112 QAGVHVVVGTPGRVFDMLRRQSLRP-DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK- 169
+ ++V+ TPGR+ D+L + S + ++ VLDEAD +L GF+D + I +L K
Sbjct: 148 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 170 ------VQVGVFSATMPPEALEITRKFMNKPVRILV----KRDELTLEGIKQFYVNVEKE 219
++ +FSAT+ + ++ MNK + + K + E I Q V EK
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 220 EWKLETLCD-----LYETLAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQ 271
+ + + E + +++IF T + +L +++ +D + HG + Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 272 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331
N R +++ F+ S +L+ TD+ ARG+D V V+ +P++ NY+HRIGR+ R G+
Sbjct: 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 387
Query: 332 KGVAINFVTRDDERMLFDIQKFYNVVI 358
+G ++ F+ +D+ + +++ N+VI
Sbjct: 388 EGSSVLFICKDELPFVRELEDAKNIVI 414
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 200/387 (51%), Gaps = 31/387 (8%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPF--CKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
L + + + I F + +QQ+ I P + DVI +A++GTGKT F I Q L
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 61 GLVQCQ----ALVLAPTRELAQQIEKVMRALGDY-LGVKVHACV---GGTSVRED-QRIL 111
Q A+++APTR+LA QIE ++ + D G+K +ACV GGT R ++
Sbjct: 139 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 198
Query: 112 QAGVHVVVGTPGRVFDMLRRQSLRP-DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK- 169
+ ++V+ TPGR+ D+L + S + ++ VLDEAD +L GF+D + I +L K
Sbjct: 199 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 258
Query: 170 ------VQVGVFSATMPPEALEITRKFMNKPVRILV----KRDELTLEGIKQFYVNVEKE 219
++ +FSAT+ + ++ MNK + + K + E I Q V EK
Sbjct: 259 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 220 EWKLETLCD-----LYETLAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQ 271
+ + + E + +++IF T + +L +++ +D + HG + Q
Sbjct: 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 378
Query: 272 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331
N R +++ F+ S +L+ TD+ ARG+D V V+ +P++ NY+HRIGR+ R G+
Sbjct: 379 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 438
Query: 332 KGVAINFVTRDDERMLFDIQKFYNVVI 358
+G ++ F+ +D+ + +++ N+VI
Sbjct: 439 EGSSVLFICKDELPFVRELEDAKNIVI 465
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 200/387 (51%), Gaps = 31/387 (8%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPF--CKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
L + + + I F + +QQ+ I P + DVI +A++GTGKT F I Q L
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 61 GLVQCQ----ALVLAPTRELAQQIEKVMRALGDY-LGVKVHACV---GGTSVRED-QRIL 111
Q A+++APTR+LA QIE ++ + D G+K +ACV GGT R ++
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 147
Query: 112 QAGVHVVVGTPGRVFDMLRRQSLRP-DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK- 169
+ ++V+ TPGR+ D+L + S + ++ VLDEAD +L GF+D + I +L K
Sbjct: 148 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 170 ------VQVGVFSATMPPEALEITRKFMNKPVRILV----KRDELTLEGIKQFYVNVEKE 219
++ +FSAT+ + ++ MNK + + K + E I Q V EK
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 220 EWKLETLCD-----LYETLAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQ 271
+ + + E + +++IF T + +L +++ +D + HG + Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 272 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331
N R +++ F+ S +L+ TD+ ARG+D V V+ +P++ NY+HRIGR+ R G+
Sbjct: 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 387
Query: 332 KGVAINFVTRDDERMLFDIQKFYNVVI 358
+G ++ F+ +D+ + +++ N+VI
Sbjct: 388 EGSSVLFICKDELPFVRELEDAKNIVI 414
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 8/174 (4%)
Query: 202 DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 261
+E+ ++ IKQ Y++ + E K + L +LY + I S+IFV T++ + L K++S H
Sbjct: 2 NEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHE 61
Query: 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------Q 315
VS HGD+ RD ++ +FR G S+VLITT++LARGID+ VS+V+NYDLPT
Sbjct: 62 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQAD 121
Query: 316 PENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY-NVVIEELPSNVAD 367
P Y+HRIGR+GRFGRKGVAI+FV ++ +L IQK++ ++ + +P++ D
Sbjct: 122 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD 175
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 3/200 (1%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ LLR I GFE PS +Q I G+DV+ QA+SG GKTA F LQQL+
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 80
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVG 120
Q LV+ TRELA QI K Y+ VKV GG S+++D+ +L+ H+VVG
Sbjct: 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 140
Query: 121 TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR+ + R +SL +IK F+LDE D+ML + + + +IF++ P + QV +FSAT+
Sbjct: 141 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200
Query: 180 PPEALEITRKFMNKPVRILV 199
E + RKFM P+ I V
Sbjct: 201 SKEIRPVCRKFMQDPMEIFV 220
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 6/170 (3%)
Query: 204 LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS 263
LTL I+Q+YV E + K + LC++Y ++ I Q++IF TRR WLT +M H VS
Sbjct: 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 264 ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------E 317
G++ R I++ FR G +VLITT++ ARGIDV+QV++V+N+DLP + E
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYE 122
Query: 318 NYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367
YLHRIGR+GRFG+KG+A N + D+ L IQ +N I++L + D
Sbjct: 123 TYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMD 172
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 7/160 (4%)
Query: 202 DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 261
+E+ ++ IKQ Y + + E K + L +LY I S+IFV T++ + L K++S H
Sbjct: 3 NEVNVDAIKQLYXDCKNEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHE 62
Query: 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------Q 315
VS HGD+ RD ++ +FR G S+VLITT++LARGID+ VS V+NYDLPT
Sbjct: 63 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQAD 122
Query: 316 PENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY 354
P Y+HRIGR+GRFGRKGVAI+FV ++ +L IQK++
Sbjct: 123 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 162
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L++LD
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK 69
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSVREDQRILQAGVHVVVGT 121
QA+V+ PTRELA Q+ ++ + ++G KV A GGT++R+D L VHVV+ T
Sbjct: 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIAT 129
Query: 122 PGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 181
PGR+ D++++ + D+++M VLDEAD++LS+ F + DI LP Q+ ++SAT P
Sbjct: 130 PGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPL 189
Query: 182 EALEITRKFMNKPVRI 197
+ + KP I
Sbjct: 190 SVQKFMNSHLEKPYEI 205
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 7/160 (4%)
Query: 202 DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 261
+E+ ++ IKQ Y + + E K + L +LY I S+IFV T++ + L K++S H
Sbjct: 4 NEVNVDAIKQLYXDCKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHE 63
Query: 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------Q 315
VS HGD+ RD ++ +FR G S+VLITT++LARGID+ VS V+NYDLPT
Sbjct: 64 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQAD 123
Query: 316 PENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY 354
P Y+HRIGR+GRFGRKGVAI+FV ++ +L IQK++
Sbjct: 124 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 163
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 202 DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 261
+ELTL+G+ Q+Y V E K+ L L+ L I QS+IF N+ ++V+ L K+ ++
Sbjct: 12 EELTLKGVTQYYAYV-TERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS 70
Query: 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321
H M Q R+ + +FR+G R L+ TDL RGID+Q V++VIN+D P E YLH
Sbjct: 71 CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH 130
Query: 322 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNV 365
RIGRSGRFG G+AIN +T DD L I++ I+ +PSN+
Sbjct: 131 RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNI 174
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 115/194 (59%), Gaps = 3/194 (1%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L +L G+ A GFE+PS +Q + I GLD+I QA+SGTGKT F + L L
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN 90
Query: 63 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGT 121
+ Q L+LAPTRE+A QI V+ A+G + G++ H +GGT + +D+ L+ H+ VG+
Sbjct: 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGS 149
Query: 122 PGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVGVFSATMP 180
PGR+ ++ L P I++F+LDEAD++L G F++QI I+ LPA Q+ SAT P
Sbjct: 150 PGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209
Query: 181 PEALEITRKFMNKP 194
K+M P
Sbjct: 210 EFLANALTKYMRDP 223
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 7/181 (3%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQL 58
+GL LL+GIYA F+KPS IQ+R + ++I Q+QSGTGKTA F +L ++
Sbjct: 27 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 86
Query: 59 DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVV 118
+ QA+ LAP+RELA+Q +V++ +G + + V S ++++I V+
Sbjct: 87 NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-SFEKNKQI---NAQVI 142
Query: 119 VGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSA 177
VGTPG V D++RR+ ++ IK+FVLDEAD ML +G DQ + + LP Q+ +FSA
Sbjct: 143 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 202
Query: 178 T 178
T
Sbjct: 203 T 203
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 5/198 (2%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ +L ++ G P+ IQ + +G D+I QA++GTGKT F I ++L
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ 67
Query: 63 V---QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVV 119
+ +ALVL PTRELA Q+ + A+ +L KV A GGT + + L G VV
Sbjct: 68 ERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRGADAVV 125
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR D LR+ L +++ VLDEADEMLS GF++++ + P Q +FSAT+
Sbjct: 126 ATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185
Query: 180 PPEALEITRKFMNKPVRI 197
P A + ++M PV I
Sbjct: 186 PSWAKRLAERYMKNPVLI 203
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Query: 204 LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS 263
LT I+ + V +EE K L D+ T +IF T+ V+ LTD++ +
Sbjct: 5 LTTRNIEHAVIQV-REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCD 63
Query: 264 ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 323
HG M Q R +M EF+ G R L+ TD+ ARGID++ +SLVINYDLP + E+Y+HR
Sbjct: 64 KIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT 123
Query: 324 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 363
GR+GR G KG AI+FVT ++R L DI+++ I+++ +
Sbjct: 124 GRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEA 163
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 5/198 (2%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L+ +L ++ G P+ I+ + +G D+I QA++GTGKT F I ++L
Sbjct: 8 LKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ 67
Query: 63 V---QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVV 119
+ +ALVL PTRELA Q+ + A+ +L KV A GGT + + L G VV
Sbjct: 68 ERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRGADAVV 125
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR D LR+ L +++ VLDEADEMLS GF++++ + P Q +FSAT+
Sbjct: 126 ATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185
Query: 180 PPEALEITRKFMNKPVRI 197
P A + ++M PV I
Sbjct: 186 PSWAKRLAERYMKNPVLI 203
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 10/207 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLD 59
L+ LL+G+YA GF +PS IQ+ + P ++I Q+QSGTGKTA F +L Q++
Sbjct: 32 LKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 90
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVV 118
Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V
Sbjct: 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIV 147
Query: 119 VGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFS 176
+GTPG V D + + + P IK+FVLDEAD M+ ++G +DQ I ++LP Q+ +FS
Sbjct: 148 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 207
Query: 177 ATMPPEALEITRKFMNKPVRILVKRDE 203
AT + +K + P I +KR+E
Sbjct: 208 ATFEDSVWKFAQKVVPDPNVIKLKREE 234
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 10/206 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLD 59
L+ LL+G+YA GF +PS IQ+ + P ++I Q+QSGTGKTA F +L Q++
Sbjct: 99 LKPQLLQGVYAMGFNRPSKIQENAL-PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157
Query: 60 YGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVV 118
Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIV 214
Query: 119 VGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFS 176
+GTPG V D + + + P IK+FVLDEAD M++ +G +DQ I ++LP Q+ +FS
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFS 274
Query: 177 ATMPPEALEITRKFMNKPVRILVKRD 202
AT + +K + P I +KR+
Sbjct: 275 ATFEDSVWKFAQKVVPDPNVIKLKRE 300
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 205 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 264
+L G++Q+YV + K+ K L DL + L Q VIFV + ++ L + ++ A
Sbjct: 2 SLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 265 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 324
H M Q R ++F+ R+L+ T+L RG+D+++V++ NYD+P + YLHR+
Sbjct: 61 IHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVA 120
Query: 325 RSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVVIEELPSNV 365
R+GRFG KG+AI FV+ +D ++L D+Q + V I ELP +
Sbjct: 121 RAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 1/200 (0%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60
+G+ + L G+ KP+ IQ I +G D+I A++G+GKT F IL L
Sbjct: 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 107
Query: 61 GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 120
+ ALVL PTRELA QI + ALG +GV+ VGG L H+++
Sbjct: 108 TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIA 167
Query: 121 TPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR+ D L + +K V+DEAD +L+ F+ ++ I +++P + +FSATM
Sbjct: 168 TPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227
Query: 180 PPEALEITRKFMNKPVRILV 199
+ ++ R + PV+ V
Sbjct: 228 TKKVQKLQRAALKNPVKCAV 247
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 17/226 (7%)
Query: 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF---------C 51
+ L + I +++P+ IQ+ I + D++ AQ+G+GKTA F C
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87
Query: 52 SGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSVREDQR 109
+ QQ + L+LAPTRELA QI + L + +CV GG R
Sbjct: 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS--LNTPLRSCVVYGGADTHSQIR 145
Query: 110 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL--LP 167
+Q G H++V TPGR+ D + + + ++ K VLDEAD ML GF+ QI I + +P
Sbjct: 146 EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP 205
Query: 168 AKV--QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 211
+ + Q +FSAT P E ++ F+ + + V R T + IKQ
Sbjct: 206 SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 4/201 (1%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
Q ++ I F KP+ IQ+R I +G + Q+Q+GTGKT + I +++
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPER 70
Query: 63 VQCQALVLAPTRELAQQIE----KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVV 118
+ QA++ APTRELA QI K+ + + +GGT ++ L H+V
Sbjct: 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIV 130
Query: 119 VGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 178
+GTPGR+ D +R Q+L + V+DEAD L GF + I P +Q VFSAT
Sbjct: 131 IGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLVFSAT 190
Query: 179 MPPEALEITRKFMNKPVRILV 199
+P + +K+ P + V
Sbjct: 191 IPEKLKPFLKKYXENPTFVHV 211
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%)
Query: 205 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 264
T E I Q V VE+ + + L L T + +++FV T++ D L D + + ++
Sbjct: 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTS 75
Query: 265 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 324
HGD Q R+ + +FRSG S +L+ T + ARG+D+ V VIN+DLP+ E Y+HRIG
Sbjct: 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135
Query: 325 RSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 363
R+GR G G+A +F + + D+ +E+PS
Sbjct: 136 RTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 209 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 268
I Q+Y + E K L L + T+S++FV R +V L + +R G+
Sbjct: 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGE 63
Query: 269 MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 328
M Q R+ ++ G VL+ TD+ ARGID+ VS V N+D+P + YLHRIGR+ R
Sbjct: 64 MVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTAR 123
Query: 329 FGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369
GRKG AI+ V D +L + ++ + E + + V D L
Sbjct: 124 AGRKGTAISLVEAHDHLLLGKVGRY---IEEPIKARVIDEL 161
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 11/207 (5%)
Query: 6 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY----- 60
N++ I F +P+AIQ +G GLD++ AQ+G+GKT ++ + +++
Sbjct: 39 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 98
Query: 61 ---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 117
G + LVLAPTRELAQQ+++V +K GG R L+ GV +
Sbjct: 99 RGDGPI---CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEI 155
Query: 118 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177
+ TPGR+ D L VLDEAD ML GF+ QI I + Q ++SA
Sbjct: 156 CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215
Query: 178 TMPPEALEITRKFMNKPVRILVKRDEL 204
T P E ++ F+ + I + EL
Sbjct: 216 TWPKEVRQLAEDFLKDYIHINIGALEL 242
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 6 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY----- 60
N++ I F +P+AIQ +G GLD++ AQ+G+GKT ++ + +++
Sbjct: 53 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 112
Query: 61 ---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 117
G + LVLAPTRELAQQ+++V +K GG R L+ GV +
Sbjct: 113 RGDGPI---CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEI 169
Query: 118 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177
+ TPGR+ D L VLDEAD ML GF+ QI I + Q ++SA
Sbjct: 170 CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 229
Query: 178 TMPPEALEITRKFMNKPVRI 197
T P E ++ F+ + I
Sbjct: 230 TWPKEVRQLAEDFLKDYIHI 249
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 11/184 (5%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF---CSGILQQLD 59
+ EN L+ I GF + IQ + I P +G D++ A++G+GKT F ++ +L
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 60 YGLVQCQA-LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVV 118
+ L+L+PTRELA Q V++ L + +GG++ + + L G++++
Sbjct: 121 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINII 180
Query: 119 VGTPGRVFDMLRRQSLRPDY----IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 174
V TPGR+ D ++ P + ++ V+DEAD +L GF++++ I +LLP + Q +
Sbjct: 181 VATPGRLLDHMQNT---PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTML 237
Query: 175 FSAT 178
FSAT
Sbjct: 238 FSAT 241
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
+IF + VD + + + + A HG DQ R + FR G VL+ TD+ ++G
Sbjct: 58 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 117
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKF 353
+D + VINYD+P + ENY+HRIGR+G G G+A F+ + DE +L D++
Sbjct: 118 LDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKAL 173
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
L + L+G+ + + IQ++ I +G DV+ A++G+GKT F +L+ L Y L
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRL 90
Query: 63 VQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVH 116
L+++PTRELA Q +V+R +G +GG ++ E +RI ++
Sbjct: 91 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI--NNIN 148
Query: 117 VVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175
++V TPGR+ + S ++M VLDEAD +L GF D + + + LP K Q +F
Sbjct: 149 ILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLF 208
Query: 176 SATMPPEALEITRKFMNKPVRILV 199
SAT ++ R + P + V
Sbjct: 209 SATQTKSVKDLARLSLKNPEYVWV 232
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 7/200 (3%)
Query: 6 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC 65
+LL+ I G KP+ IQ + +G+D+I AQ+GTGKT ++ LD +
Sbjct: 30 DLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89
Query: 66 Q------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVV 119
+ LVL PTRELA +E Y G+K GG + + GV +++
Sbjct: 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIII 148
Query: 120 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179
TPGR+ D+ S+ I V+DEAD+ML F+ QI I + Q + SAT
Sbjct: 149 ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208
Query: 180 PPEALEITRKFMNKPVRILV 199
P ++ ++ P+ + V
Sbjct: 209 PDTVRQLALSYLKDPMIVYV 228
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%)
Query: 222 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 281
+LE L DL + ++++F T+ + + + + H A HGDM Q R+ +M F
Sbjct: 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF 74
Query: 282 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321
R G RVL+ TD+ ARG+D+ QV LV++Y +P + E Y H
Sbjct: 75 RQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%)
Query: 222 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 281
+LE L DL + ++++F T+ + + + + H A HGD+ Q R+ ++ F
Sbjct: 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77
Query: 282 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321
R G RVL+ TD+ ARG+D+ QV LV++Y LP + E Y H
Sbjct: 78 RQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 237 QSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 293
+++IF T + +L +++ +D + HG + QN R +++ F+ S +L+ TD
Sbjct: 35 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 94
Query: 294 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 353
+ ARG+D V V+ +P++ NY+HRIGR+ R G++G ++ F+ +D+ + +++
Sbjct: 95 VGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 154
Query: 354 YNVVI 358
N+VI
Sbjct: 155 KNIVI 159
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 237 QSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 293
+++IF T + +L +++ +D + HG + QN R +++ F+ S +L+ TD
Sbjct: 35 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 94
Query: 294 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 353
+ ARG+D V V+ +P++ NY+HRIGR+ R G++G ++ F+ +D+ + +++
Sbjct: 95 VGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 154
Query: 354 YNVVI 358
N+VI
Sbjct: 155 KNIVI 159
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 237 QSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 293
+++IF T + +L +++ +D + HG + QN R +++ F+ S +L+ TD
Sbjct: 35 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 94
Query: 294 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 353
+ ARG+D V V+ +P++ NY+HRIGR+ R G++G ++ F+ +D+ + +++
Sbjct: 95 VGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 154
Query: 354 YNVVI 358
N+VI
Sbjct: 155 KNIVI 159
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 8/185 (4%)
Query: 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 62
+ LL+ I GF+ P+ IQ + I G +++ A +G+GKT F IL QL
Sbjct: 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA 95
Query: 63 VQ-CQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQRILQAGVHVVVG 120
+ +AL+++PTRELA QI + + + + G ++H + ++ ++V
Sbjct: 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155
Query: 121 TPGRVFDMLRRQSLRPDY--IKMFVLDEADEML---SRGFKDQIYDIFQLLPA-KVQVGV 174
TP R+ +L++ D ++ V+DE+D++ GF+DQ+ IF + KV+ +
Sbjct: 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAM 215
Query: 175 FSATM 179
FSAT
Sbjct: 216 FSATF 220
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%)
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
+I+ N+R KV+ +++S+ + +A H ++ N R + +F+ ++++ T G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 343
I+ V V+++D+P E+Y GR+GR G A+ F D
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%)
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
+I+ N+R KV+ +++S+ + +A H ++ N R + +F+ ++++ T G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXG 299
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347
I+ V V+++D+P E+Y GR+GR G A F D L
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWL 348
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-------LTLEGIK 210
QI D +++ A + F + + + KP+++ DE L E K
Sbjct: 312 QINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKL----DETDRFLMTLFFENNK 367
Query: 211 QFYVNVEKEEWKLETLCDLYETL--------AITQSVIFVNTRRKV----DWLTDKMR-- 256
E E++ E L L T+ + +IF TR+ W+T+ +
Sbjct: 368 MLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFA 427
Query: 257 ----SRDHTVSATHGD----MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308
H + A H M QN + ++ +FR+G +LI T + G+D+++ ++VI
Sbjct: 428 EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI 487
Query: 309 NYDLPTQPENYLHRIGRS 326
Y L T + GR+
Sbjct: 488 RYGLVTNEIAMVQARGRA 505
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 140/324 (43%), Gaps = 45/324 (13%)
Query: 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91
K ++ + Q G+GKT IL + G Q + PT LA I+ R + +
Sbjct: 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILA--IQHYRRTVESFS 442
Query: 92 GVKVHAC--VGGTSVREDQRI---LQAG-VHVVVGTPGRVFDMLRRQSLR---PDYIKMF 142
+H +G T+ E ++I L+ G + VV+GT + + + ++L D F
Sbjct: 443 KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRF 502
Query: 143 VLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEA--------LEITRKFMNKP 194
+ + + ++++G V V SAT P + L++T P
Sbjct: 503 GVKQREALMNKG-------------KMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPP 549
Query: 195 VRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDK 254
R V+ + ++ + + Y V +E + +Y + + + + ++L+ +
Sbjct: 550 GRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE 609
Query: 255 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 314
+ + + HG + Q +D +M EF G +L++T ++ GIDV + ++++
Sbjct: 610 VFP-EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----IE 664
Query: 315 QPENY----LHRI-GRSGRFGRKG 333
PE + LH++ GR GR G++
Sbjct: 665 NPERFGLAQLHQLRGRVGRGGQEA 688
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 198 LVKRDELTLEGIKQFYVNVEKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 253
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct: 348 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 407
Query: 254 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 300
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct: 408 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 467
Query: 301 VQQVSLVINYD 311
+ Q +LVI Y+
Sbjct: 468 IAQCNLVILYE 478
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 198 LVKRDELTLEGIKQFYVNVEKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 253
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct: 356 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 415
Query: 254 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 300
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct: 416 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 475
Query: 301 VQQVSLVINYD 311
+ Q +LVI Y+
Sbjct: 476 IAQCNLVILYE 486
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 198 LVKRDELTLEGIKQFYVNVEKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 253
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct: 357 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 416
Query: 254 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 300
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct: 417 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 476
Query: 301 VQQVSLVINYD 311
+ Q +LVI Y+
Sbjct: 477 IAQCNLVILYE 487
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298
+I+ +++ + +T +++ A H +++ + + R++ + +V++ T G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330
Query: 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 336
ID V VI++ + ENY GR+GR K I
Sbjct: 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 216 VEKEEWKLETLCDLYETLA--------ITQSVIFVNTRRKV----DWLTDKMR------S 257
E E++ E L L T+ + +IF TR+ W+TD +
Sbjct: 123 AENPEYENEKLTKLRNTIXEHFTRTEESARGIIFTKTRQSAYALSQWITDNKKFAEVGVK 182
Query: 258 RDHTVSATHGD----MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 313
H + A H QN + ++ +FR+G +LI T + G+D+++ ++VI Y L
Sbjct: 183 AHHLIGAGHSSEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV 242
Query: 314 T 314
T
Sbjct: 243 T 243
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 189 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR--- 245
K M K + +LV+ E+ L+ K + E + + + ++ ++F N R
Sbjct: 323 KRMKKAISLLVQAKEIGLDHPKMDKLK--------EIIREQLQRKQNSKIIVFTNYRETA 374
Query: 246 RKV--DWLTDKMRSRDHTVSATHGD---MDQNTRDIIMREFRSGSSRVLITTDLLARGID 300
+K+ + + D ++++ A+ + + Q + +I+ EF G VL+ T + G+D
Sbjct: 375 KKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLD 434
Query: 301 VQQVSLVINYDLPTQPENYLHRIGRSGRF--GRKGVAINFVTRDD 343
V +V LV+ Y+ + R GR+GR GR + + TRD+
Sbjct: 435 VPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL
Sbjct: 472 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 531
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGR 328
G+D+ +VSLV D + + + IGR+ R
Sbjct: 532 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 568
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL
Sbjct: 447 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGR 328
G+D+ +VSLV D + + + IGR+ R
Sbjct: 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL
Sbjct: 446 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 505
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGR 328
G+D+ +VSLV D + + + IGR+ R
Sbjct: 506 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL
Sbjct: 447 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGR 328
G+D+ +VSLV D + + + IGR+ R
Sbjct: 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL
Sbjct: 447 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGR 328
G+D+ +VSLV D + + + IGR+ R
Sbjct: 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 244 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 303
T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL G+D+ +
Sbjct: 460 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 519
Query: 304 VSLVINYDLPTQ-----PENYLHRIGRSGR 328
VSLV D + + + IGR+ R
Sbjct: 520 VSLVAILDADKEGFLRSERSLIQTIGRAAR 549
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 244 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 303
T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL G+D+ +
Sbjct: 454 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513
Query: 304 VSLVINYDLPTQ-----PENYLHRIGRSGR 328
VSLV D + + + IGR+ R
Sbjct: 514 VSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ V T R + LT + H ++D R ++R+ R G L+ +LL
Sbjct: 442 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 501
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 351
G+D+ +VSLV D + + + IGR+ R R V + + R E M I+
Sbjct: 502 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL-YADRVSEAMQRAIE 560
Query: 352 K 352
+
Sbjct: 561 E 561
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296
++++ V T R + LT + H ++D R ++R+ R G L+ +LL
Sbjct: 441 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 500
Query: 297 RGIDVQQVSLVINYDLPTQ-----PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 351
G+D+ +VSLV D + + + IGR+ R R V + + R E M I+
Sbjct: 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL-YADRVSEAMQRAIE 559
Query: 352 K 352
+
Sbjct: 560 E 560
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 236 TQSVIFVNTRRKVD----WLTDK----------MRSRDHTVSATHGDMDQNTRDIIMREF 281
T++++FV TR VD W+ + + R T AT + + ++ F
Sbjct: 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLP--AQKCVLEAF 447
Query: 282 R-SGSSRVLITTDLLARGIDVQQVSLVINYD 311
R SG + +LI T + GID+ + +LVI Y+
Sbjct: 448 RASGDNNILIATSVADEGIDIAECNLVILYE 478
>pdb|2BHR|A Chain A, Dengue Virus Rna Helicase
pdb|2BHR|B Chain B, Dengue Virus Rna Helicase
pdb|2BMF|A Chain A, Dengue Virus Rna Helicase At 2.4a
pdb|2BMF|B Chain B, Dengue Virus Rna Helicase At 2.4a
Length = 451
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 30 FCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
F K I G GKT + I+++ + GL + L+LAPTR +A ++E+ +R L
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGL---RTLILAPTRVVAAEMEEALRGL 71
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 159/391 (40%), Gaps = 79/391 (20%)
Query: 20 SAIQQRGIVPF------------CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC-Q 66
S +++RGI F +G + + + +GKT ++ ++ L Q +
Sbjct: 14 STLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI---LTQGGK 70
Query: 67 ALVLAPTRELAQQIEKVMRALGDY--LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGR 124
A+ + P + LA E+ + D+ +G++V G +++ +++ T +
Sbjct: 71 AVYIVPLKALA---EEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEK 124
Query: 125 VFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM-PPEA 183
+LR S +K+ V DE + SR + I + K Q+ SAT+ PE
Sbjct: 125 FDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEE 184
Query: 184 LEITRKFMNKPVRILVKRDELTLEGIKQFYVN-VEKEEWKLETLCDLYETL--AITQ--- 237
L +++N + + R G+ FY V E+ ++ E + AI +
Sbjct: 185 LA---EWLNAELIVSDWRPVKLRRGV--FYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239
Query: 238 SVIFVNTRRKVD----WLTDKMRS------------------RDHT-----------VSA 264
++IFVN RRK + L+ K++S + T V+
Sbjct: 240 ALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299
Query: 265 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI-------NYDLPTQPE 317
H + ++ R ++ FR G + ++ T L+ GI+ ++I ++ + P
Sbjct: 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPI 359
Query: 318 NYLHR-IGRSGR--FGRKGVAINFVTRDDER 345
+H+ +GR+GR + G I T DD R
Sbjct: 360 IEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 270 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 325
+ R+ I+ FR+G R ++++ +L GIDV ++ + Y+ R+GR
Sbjct: 379 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 270 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 325
+ R+ I+ FR+G R ++++ +L GIDV ++ + Y+ R+GR
Sbjct: 144 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 199
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 286 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331
++VL+ +++ + G + Q S + +DLP P+ RIGR R G+
Sbjct: 557 AQVLLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQ 602
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--YDLPTQPENY 319
V+ H + + RD+I FR +V++ T LA G+++ +++I Y + Y
Sbjct: 315 VAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGY 374
Query: 320 LHRIG------RSGRFGRKG 333
I SGR GR G
Sbjct: 375 YDEIPIMEYKQMSGRAGRPG 394
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 31/173 (17%)
Query: 186 ITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-C---DLYETLAITQSVI 240
+T KF K P I + +DE E KLE L C D Y T++++
Sbjct: 590 LTAKFQEKEPELIALSKDETN-------------ENPKLEELVCILDDAYRYNPQTRTLL 636
Query: 241 FVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNT------RDIIMREFR-SGSSR 287
F TR V L M V G DQ T + ++ F+ S +R
Sbjct: 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696
Query: 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 340
+LI T + GID+ Q +LV+ Y+ + GR G K + + T
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKT 749
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 31/169 (18%)
Query: 186 ITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-C---DLYETLAITQSVI 240
+T KF K P I + +DE E KLE L C D Y T++++
Sbjct: 349 LTAKFQEKEPELIALSKDETN-------------ENPKLEELVCILDDAYRYNPQTRTLL 395
Query: 241 FVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNT------RDIIMREFR-SGSSR 287
F TR V L M V G DQ T + ++ F+ S +R
Sbjct: 396 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455
Query: 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 336
+LI T + GID+ Q +LV+ Y+ + GR G K + +
Sbjct: 456 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILV 504
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 31/173 (17%)
Query: 186 ITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-C---DLYETLAITQSVI 240
+T KF K P I + +DE E KLE L C D Y T++++
Sbjct: 590 LTAKFQEKEPELIALSKDETN-------------ENPKLEELVCILDDAYRYNPQTRTLL 636
Query: 241 FVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNT------RDIIMREFR-SGSSR 287
F TR V L M V G DQ T + ++ F+ S +R
Sbjct: 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696
Query: 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 340
+LI T + GID+ Q +LV+ Y+ + GR G K + + T
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKT 749
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321
++ HG M + + +M +F VL+ T ++ GID+ + +I LH
Sbjct: 841 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 900
Query: 322 RI-GRSGRFGRKGVAINFVTRDDERMLFDIQK 352
++ GR GR + A +T + M D QK
Sbjct: 901 QLRGRVGRSHHQAYAW-LLTPHPKAMTTDAQK 931
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 182 EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 241
E ++ ++ FM+ + I++K+ + + G+ F + E W +C ++ + ++ +
Sbjct: 478 EVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIW----MCIVFAYIGVSVVLFL 533
Query: 242 VNTRRKVDWLTDKMRSRDHTVSA 264
V+ +W T++ T S+
Sbjct: 534 VSRFSPYEWHTEEFEDGRETQSS 556
>pdb|2JLU|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLU|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLV|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLV|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLW|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLW|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLX|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Adp- Vanadate
pdb|2JLX|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Adp- Vanadate
pdb|2JLZ|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Adp
pdb|2JLZ|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Adp
Length = 451
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
F K I G GKT I+++ + + L+LAPTR +A ++E+ +R L
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 71
>pdb|2JLS|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Adp
Length = 451
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
F K I G GKT I+++ + + L+LAPTR +A ++E+ +R L
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 71
>pdb|2JLR|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Amppnp
Length = 451
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
F K I G GKT I+++ + + L+LAPTR +A ++E+ +R L
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 71
>pdb|1YKS|A Chain A, Crystal Structure Of Yellow Fever Virus Ns3 Helicase
Length = 440
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
KG+ + G GKT F IL + + + LVLAPTR + ++++ L
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQILAEC--ARRRLRTLVLAPTRVVLSEMKEAFHGL 60
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
F K I G GKT I+++ + + L+LAPTR +A ++E+ +R L
Sbjct: 183 FRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 238
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
I G GKT I+++ + + L+LAPTR +A ++E+ +R L
Sbjct: 190 TIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 239
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87
F K I G GKT I+++ + + L+LAPTR +A ++E+ +R L
Sbjct: 183 FRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 238
>pdb|3TCX|B Chain B, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|D Chain D, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|F Chain F, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|H Chain H, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|J Chain J, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|L Chain L, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|N Chain N, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|P Chain P, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|R Chain R, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|T Chain T, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|V Chain V, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|X Chain X, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|Z Chain Z, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|BB Chain b, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
Length = 180
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 135 RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP 194
RPD K+ ++ E G D DI + + +G+ + E+ E KF +KP
Sbjct: 100 RPDATKVLIIITDGEATDSGNIDAAKDIIRYI-----IGIGKHSQTKESQETLHKFASKP 154
Query: 195 VRILVKRDELTLEGIKQFYVNVEKE 219
VK + T E +K + ++K+
Sbjct: 155 ASEFVKILD-TFEKLKDLFTELQKK 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,391,077
Number of Sequences: 62578
Number of extensions: 418287
Number of successful extensions: 1367
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 118
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)