Query 017573
Match_columns 369
No_of_seqs 159 out of 1534
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 09:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 7.9E-65 1.7E-69 396.8 28.3 369 1-369 32-400 (400)
2 PRK04837 ATP-dependent RNA hel 100.0 3.1E-60 6.7E-65 425.0 41.8 360 1-361 13-381 (423)
3 PRK11776 ATP-dependent RNA hel 100.0 6.8E-60 1.5E-64 427.3 41.9 357 1-359 9-366 (460)
4 PTZ00110 helicase; Provisional 100.0 5.3E-60 1.2E-64 431.5 40.8 367 1-368 135-510 (545)
5 KOG0330 ATP-dependent RNA heli 100.0 7.8E-61 1.7E-65 390.2 30.6 359 1-360 66-425 (476)
6 KOG0331 ATP-dependent RNA heli 100.0 3.4E-60 7.4E-65 411.0 35.8 367 1-368 96-474 (519)
7 PTZ00424 helicase 45; Provisio 100.0 3.9E-59 8.3E-64 417.6 42.4 369 1-369 33-401 (401)
8 PRK10590 ATP-dependent RNA hel 100.0 2.7E-59 5.8E-64 421.3 41.3 358 1-359 6-369 (456)
9 PRK11192 ATP-dependent RNA hel 100.0 8.5E-59 1.8E-63 417.8 42.6 359 1-359 6-369 (434)
10 PRK11634 ATP-dependent RNA hel 100.0 4.5E-59 9.6E-64 428.8 40.8 361 1-362 11-372 (629)
11 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-58 2.5E-63 421.7 41.0 365 1-367 126-500 (518)
12 PRK04537 ATP-dependent RNA hel 100.0 2E-58 4.4E-63 422.4 40.7 358 1-359 14-381 (572)
13 COG0513 SrmB Superfamily II DN 100.0 3.3E-58 7.1E-63 415.7 40.6 359 1-359 34-398 (513)
14 PRK01297 ATP-dependent RNA hel 100.0 4.7E-57 1E-61 409.6 42.4 358 1-359 92-459 (475)
15 KOG0333 U5 snRNP-like RNA heli 100.0 3.7E-55 8E-60 369.8 32.7 365 2-367 251-650 (673)
16 KOG0345 ATP-dependent RNA heli 100.0 1.2E-54 2.7E-59 362.1 33.0 344 1-345 11-367 (567)
17 KOG0338 ATP-dependent RNA heli 100.0 2.5E-55 5.5E-60 369.5 25.6 353 1-353 186-544 (691)
18 KOG0326 ATP-dependent RNA heli 100.0 4.3E-55 9.3E-60 348.0 21.4 364 2-367 91-454 (459)
19 KOG0340 ATP-dependent RNA heli 100.0 8.8E-53 1.9E-57 339.2 28.6 361 1-362 12-381 (442)
20 KOG0335 ATP-dependent RNA heli 100.0 1E-52 2.2E-57 358.3 29.7 365 2-367 80-469 (482)
21 KOG0342 ATP-dependent RNA heli 100.0 3E-52 6.6E-57 349.9 31.2 349 2-351 88-446 (543)
22 KOG0327 Translation initiation 100.0 1.2E-52 2.7E-57 342.8 28.0 366 1-369 31-397 (397)
23 KOG0336 ATP-dependent RNA heli 100.0 3E-52 6.5E-57 342.4 27.2 364 2-367 226-597 (629)
24 TIGR03817 DECH_helic helicase/ 100.0 6.5E-51 1.4E-55 382.0 35.4 352 2-361 20-407 (742)
25 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-50 2.3E-55 344.8 30.7 358 1-361 74-441 (758)
26 KOG0346 RNA helicase [RNA proc 100.0 1.2E-50 2.7E-55 335.5 28.2 356 1-357 24-425 (569)
27 KOG0339 ATP-dependent RNA heli 100.0 3.3E-49 7.2E-54 332.5 31.6 368 1-368 228-601 (731)
28 KOG0332 ATP-dependent RNA heli 100.0 1.2E-49 2.6E-54 323.2 26.6 359 1-362 95-464 (477)
29 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-48 2.7E-53 353.1 33.3 325 12-352 5-343 (470)
30 PLN03137 ATP-dependent DNA hel 100.0 1.3E-47 2.9E-52 358.3 36.7 336 3-352 444-797 (1195)
31 PRK11057 ATP-dependent DNA hel 100.0 3.9E-47 8.4E-52 351.8 35.9 332 2-350 8-351 (607)
32 KOG0341 DEAD-box protein abstr 100.0 2.8E-49 6.1E-54 322.9 17.8 366 1-368 175-555 (610)
33 KOG0348 ATP-dependent RNA heli 100.0 1.3E-47 2.8E-52 324.9 28.1 353 1-353 141-565 (708)
34 PRK02362 ski2-like helicase; P 100.0 1.1E-46 2.3E-51 357.5 33.5 328 1-343 6-398 (737)
35 TIGR01389 recQ ATP-dependent D 100.0 1.5E-46 3.3E-51 349.2 33.2 326 9-351 3-340 (591)
36 KOG0347 RNA helicase [RNA proc 100.0 8.8E-48 1.9E-52 326.9 21.2 356 1-358 186-586 (731)
37 KOG0334 RNA helicase [RNA proc 100.0 6.9E-47 1.5E-51 345.1 27.7 365 2-366 371-744 (997)
38 KOG4284 DEAD box protein [Tran 100.0 5.5E-47 1.2E-51 327.7 24.9 341 3-344 32-381 (980)
39 PRK00254 ski2-like helicase; P 100.0 5.3E-45 1.2E-49 345.1 32.8 332 1-343 6-389 (720)
40 KOG0337 ATP-dependent RNA heli 100.0 9.1E-46 2E-50 305.1 23.7 358 1-359 26-385 (529)
41 PRK13767 ATP-dependent helicas 100.0 1.5E-44 3.3E-49 345.7 34.9 333 3-340 18-396 (876)
42 COG1111 MPH1 ERCC4-like helica 100.0 5.1E-44 1.1E-48 302.8 31.5 326 15-345 12-484 (542)
43 COG1201 Lhr Lhr-like helicases 100.0 3.1E-44 6.6E-49 329.1 31.1 333 3-341 8-361 (814)
44 TIGR00580 mfd transcription-re 100.0 1.5E-43 3.3E-48 335.3 36.8 321 3-342 436-770 (926)
45 PRK01172 ski2-like helicase; P 100.0 5.1E-44 1.1E-48 337.2 30.4 328 1-343 6-379 (674)
46 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-44 4.5E-49 303.1 24.2 350 6-356 147-554 (620)
47 KOG0344 ATP-dependent RNA heli 100.0 3.1E-44 6.8E-49 308.6 23.3 366 2-367 142-520 (593)
48 COG0514 RecQ Superfamily II DN 100.0 1.4E-43 3E-48 313.6 27.3 333 7-354 5-349 (590)
49 PRK10689 transcription-repair 100.0 2E-42 4.3E-47 334.6 37.3 318 6-342 589-919 (1147)
50 PRK10917 ATP-dependent DNA hel 100.0 3.2E-42 6.9E-47 322.4 36.7 317 7-341 251-588 (681)
51 TIGR00643 recG ATP-dependent D 100.0 2.3E-41 5E-46 314.7 36.6 317 6-340 224-564 (630)
52 PHA02558 uvsW UvsW helicase; P 100.0 4.4E-41 9.6E-46 305.4 27.8 300 17-333 113-443 (501)
53 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-40 6E-45 304.8 32.5 314 14-339 12-388 (844)
54 COG1202 Superfamily II helicas 100.0 8.6E-41 1.9E-45 286.2 22.6 333 1-342 199-553 (830)
55 PRK09751 putative ATP-dependen 100.0 2.6E-39 5.6E-44 314.8 33.8 321 38-362 1-407 (1490)
56 PRK09401 reverse gyrase; Revie 100.0 5.5E-38 1.2E-42 304.5 35.3 283 14-314 77-410 (1176)
57 COG1204 Superfamily II helicas 100.0 3.6E-39 7.7E-44 299.7 25.9 334 3-343 16-409 (766)
58 TIGR00603 rad25 DNA repair hel 100.0 6.5E-39 1.4E-43 292.8 26.7 310 17-348 254-613 (732)
59 KOG0354 DEAD-box like helicase 100.0 7E-39 1.5E-43 287.1 25.1 327 16-348 60-535 (746)
60 PRK13766 Hef nuclease; Provisi 100.0 7.6E-38 1.6E-42 300.8 33.6 330 11-345 8-482 (773)
61 COG1205 Distinct helicase fami 100.0 3.6E-38 7.9E-43 297.0 30.4 349 4-355 56-437 (851)
62 KOG0329 ATP-dependent RNA heli 100.0 8.1E-40 1.8E-44 253.1 15.5 327 3-365 49-379 (387)
63 PHA02653 RNA helicase NPH-II; 100.0 1.1E-37 2.3E-42 286.1 28.5 314 21-350 167-522 (675)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-37 4.9E-42 272.6 25.6 301 35-344 1-338 (358)
65 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.6E-36 3.4E-41 284.9 32.3 306 22-345 6-339 (819)
66 PRK11664 ATP-dependent RNA hel 100.0 1.2E-36 2.5E-41 286.5 29.3 307 21-345 8-342 (812)
67 PRK14701 reverse gyrase; Provi 100.0 1.8E-36 3.9E-41 299.9 31.0 324 6-345 67-459 (1638)
68 COG1200 RecG RecG-like helicas 100.0 3.2E-35 6.9E-40 259.9 30.5 320 7-343 252-592 (677)
69 TIGR03714 secA2 accessory Sec 100.0 1.8E-35 4E-40 270.3 29.7 319 18-345 68-540 (762)
70 COG1061 SSL2 DNA or RNA helica 100.0 3.1E-36 6.8E-41 268.2 23.9 293 17-329 35-376 (442)
71 TIGR01054 rgy reverse gyrase. 100.0 1.2E-34 2.7E-39 281.7 35.2 290 7-313 67-408 (1171)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 6E-35 1.3E-39 254.1 29.7 289 22-327 1-357 (357)
73 PRK12898 secA preprotein trans 100.0 4E-35 8.6E-40 265.0 29.2 319 14-345 100-589 (656)
74 KOG0952 DNA/RNA helicase MER3/ 100.0 1.7E-35 3.8E-40 269.2 24.4 333 11-350 103-499 (1230)
75 PRK04914 ATP-dependent helicas 100.0 1E-34 2.2E-39 274.4 29.7 335 17-356 151-617 (956)
76 PRK09200 preprotein translocas 100.0 1E-34 2.3E-39 267.9 28.4 319 14-345 75-544 (790)
77 TIGR00963 secA preprotein tran 100.0 2.8E-34 6.1E-39 260.9 29.6 319 15-346 54-521 (745)
78 KOG0351 ATP-dependent DNA heli 100.0 6.5E-35 1.4E-39 273.2 26.2 332 9-352 255-602 (941)
79 KOG0352 ATP-dependent DNA heli 100.0 6.6E-35 1.4E-39 241.7 20.7 329 6-350 6-370 (641)
80 KOG0353 ATP-dependent DNA heli 100.0 2.7E-33 5.9E-38 229.3 22.0 336 2-349 77-474 (695)
81 COG1197 Mfd Transcription-repa 100.0 2.6E-32 5.7E-37 254.7 30.6 322 2-342 578-913 (1139)
82 KOG0349 Putative DEAD-box RNA 100.0 5.9E-33 1.3E-37 230.8 20.4 289 62-350 284-623 (725)
83 PRK05580 primosome assembly pr 100.0 1.3E-31 2.7E-36 250.2 31.5 315 18-350 144-557 (679)
84 PRK11448 hsdR type I restricti 100.0 4.6E-32 9.9E-37 262.0 28.3 304 17-331 412-802 (1123)
85 cd00268 DEADc DEAD-box helicas 100.0 7.5E-32 1.6E-36 218.6 23.6 197 1-197 4-202 (203)
86 COG4098 comFA Superfamily II D 100.0 2.3E-31 5.1E-36 214.9 25.9 309 17-348 96-422 (441)
87 PLN03142 Probable chromatin-re 100.0 4.9E-31 1.1E-35 250.4 28.9 317 18-342 169-599 (1033)
88 PRK09694 helicase Cas3; Provis 100.0 2.1E-30 4.6E-35 243.8 32.8 313 14-331 282-664 (878)
89 TIGR00595 priA primosomal prot 100.0 4E-31 8.8E-36 238.3 26.2 304 37-358 1-402 (505)
90 KOG0951 RNA helicase BRR2, DEA 100.0 2.2E-31 4.8E-36 245.9 23.8 339 3-349 296-709 (1674)
91 PRK11131 ATP-dependent RNA hel 100.0 1.1E-30 2.3E-35 250.8 27.3 303 20-345 76-414 (1294)
92 KOG0947 Cytoplasmic exosomal R 100.0 6.6E-30 1.4E-34 230.8 23.4 314 12-342 292-723 (1248)
93 PRK13104 secA preprotein trans 100.0 9.1E-29 2E-33 228.4 27.7 317 20-346 82-591 (896)
94 KOG0948 Nuclear exosomal RNA h 100.0 6.3E-30 1.4E-34 225.6 17.5 308 18-342 129-539 (1041)
95 PRK12906 secA preprotein trans 100.0 6.8E-29 1.5E-33 228.0 24.2 317 18-346 80-557 (796)
96 PRK12904 preprotein translocas 100.0 2.3E-28 4.9E-33 225.5 27.6 317 18-346 81-577 (830)
97 COG4581 Superfamily II RNA hel 100.0 7.9E-29 1.7E-33 231.4 24.0 315 12-341 114-536 (1041)
98 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.4E-28 3.1E-33 237.1 25.6 304 24-346 73-408 (1283)
99 PRK12899 secA preprotein trans 100.0 2.9E-27 6.3E-32 218.2 30.2 146 1-151 67-228 (970)
100 TIGR00348 hsdR type I site-spe 100.0 1.9E-26 4.1E-31 215.4 29.1 299 19-329 239-634 (667)
101 PF00270 DEAD: DEAD/DEAH box h 100.0 1.2E-27 2.7E-32 188.3 17.9 164 20-184 1-167 (169)
102 KOG0387 Transcription-coupled 100.0 1.1E-26 2.4E-31 206.8 23.8 331 17-355 204-671 (923)
103 KOG0950 DNA polymerase theta/e 100.0 3.2E-27 7E-32 214.5 19.8 334 8-350 213-619 (1008)
104 KOG0385 Chromatin remodeling c 100.0 3.3E-26 7.1E-31 203.0 24.5 318 17-342 166-599 (971)
105 PRK13107 preprotein translocas 100.0 3.1E-26 6.7E-31 211.1 24.5 316 18-345 82-594 (908)
106 COG4096 HsdR Type I site-speci 100.0 9.6E-27 2.1E-31 209.3 20.6 295 17-329 164-525 (875)
107 KOG0390 DNA repair protein, SN 99.9 2.2E-25 4.7E-30 202.9 28.0 318 17-340 237-703 (776)
108 COG1203 CRISPR-associated heli 99.9 3.9E-26 8.4E-31 215.5 21.8 323 17-343 194-551 (733)
109 COG1110 Reverse gyrase [DNA re 99.9 6.5E-25 1.4E-29 200.8 27.3 286 9-313 73-416 (1187)
110 KOG1123 RNA polymerase II tran 99.9 2.9E-26 6.3E-31 194.3 11.9 314 15-350 299-661 (776)
111 COG1643 HrpA HrpA-like helicas 99.9 1.9E-24 4.1E-29 200.9 24.6 309 20-345 52-390 (845)
112 COG0556 UvrB Helicase subunit 99.9 4.4E-24 9.6E-29 182.8 24.2 174 169-350 386-565 (663)
113 KOG1000 Chromatin remodeling p 99.9 2.9E-23 6.3E-28 175.9 26.3 326 17-354 197-617 (689)
114 COG1198 PriA Primosomal protei 99.9 6.2E-24 1.3E-28 194.6 24.0 328 17-359 197-625 (730)
115 TIGR01407 dinG_rel DnaQ family 99.9 8.7E-23 1.9E-27 196.9 32.7 332 5-342 233-814 (850)
116 KOG0392 SNF2 family DNA-depend 99.9 8.7E-24 1.9E-28 195.8 23.7 328 18-353 975-1466(1549)
117 KOG0922 DEAH-box RNA helicase 99.9 2.1E-23 4.6E-28 183.6 23.0 310 20-346 53-394 (674)
118 PRK12326 preprotein translocas 99.9 5.6E-23 1.2E-27 185.4 25.9 316 15-345 76-550 (764)
119 KOG0389 SNF2 family DNA-depend 99.9 1.3E-23 2.8E-28 187.2 20.5 321 18-345 399-891 (941)
120 PRK12900 secA preprotein trans 99.9 6.8E-23 1.5E-27 190.1 20.5 124 220-345 581-714 (1025)
121 COG4889 Predicted helicase [Ge 99.9 1.3E-24 2.9E-29 195.3 8.2 317 7-329 150-572 (1518)
122 PRK13103 secA preprotein trans 99.9 2.7E-22 6E-27 185.4 22.8 314 18-345 82-594 (913)
123 smart00487 DEXDc DEAD-like hel 99.9 3.2E-22 7E-27 162.1 20.6 188 13-201 3-192 (201)
124 TIGR00631 uvrb excinuclease AB 99.9 8.1E-21 1.8E-25 175.8 31.8 131 222-353 427-564 (655)
125 KOG0384 Chromodomain-helicase 99.9 3.4E-22 7.3E-27 185.9 21.1 318 17-343 369-812 (1373)
126 PRK07246 bifunctional ATP-depe 99.9 3.5E-20 7.6E-25 176.5 28.5 315 17-342 244-783 (820)
127 KOG0923 mRNA splicing factor A 99.9 9.6E-21 2.1E-25 166.0 20.6 311 17-343 264-607 (902)
128 KOG0949 Predicted helicase, DE 99.9 1.2E-20 2.5E-25 171.9 21.6 159 18-181 511-673 (1330)
129 PRK12903 secA preprotein trans 99.9 1.8E-20 3.8E-25 171.9 22.4 314 18-345 78-542 (925)
130 KOG0920 ATP-dependent RNA heli 99.9 2.8E-20 6.1E-25 172.8 22.3 318 19-347 174-549 (924)
131 PRK05298 excinuclease ABC subu 99.9 1.8E-19 4E-24 168.1 27.6 143 222-365 431-589 (652)
132 KOG0926 DEAH-box RNA helicase 99.9 1.1E-20 2.4E-25 168.9 16.7 326 24-362 262-722 (1172)
133 PRK08074 bifunctional ATP-depe 99.9 3.3E-18 7.2E-23 166.0 32.3 109 234-342 751-893 (928)
134 TIGR03117 cas_csf4 CRISPR-asso 99.8 9.8E-18 2.1E-22 153.0 32.1 115 225-342 461-616 (636)
135 KOG0924 mRNA splicing factor A 99.8 2.3E-19 5E-24 158.0 20.3 305 20-343 358-698 (1042)
136 CHL00122 secA preprotein trans 99.8 6.2E-19 1.3E-23 162.7 24.1 273 18-302 76-491 (870)
137 cd00046 DEXDc DEAD-like helica 99.8 3.6E-19 7.7E-24 136.0 17.6 144 34-179 1-144 (144)
138 KOG4439 RNA polymerase II tran 99.8 3.3E-19 7.1E-24 157.5 19.1 106 234-339 745-853 (901)
139 PF04851 ResIII: Type III rest 99.8 4.4E-20 9.6E-25 147.5 11.5 151 18-180 3-183 (184)
140 KOG0386 Chromatin remodeling c 99.8 2.4E-20 5.1E-25 170.5 9.9 321 15-342 391-836 (1157)
141 KOG4150 Predicted ATP-dependen 99.8 1.7E-19 3.6E-24 156.0 14.5 357 7-365 274-665 (1034)
142 cd00079 HELICc Helicase superf 99.8 3E-19 6.6E-24 134.2 14.4 118 221-338 12-131 (131)
143 KOG0391 SNF2 family DNA-depend 99.8 1.1E-18 2.3E-23 161.6 19.9 121 222-342 1261-1387(1958)
144 KOG0953 Mitochondrial RNA heli 99.8 7.1E-19 1.5E-23 151.6 16.8 284 34-359 192-490 (700)
145 PRK12902 secA preprotein trans 99.8 1.5E-17 3.2E-22 153.5 23.5 273 18-302 85-506 (939)
146 TIGR00604 rad3 DNA repair heli 99.8 2.1E-16 4.5E-21 150.1 28.7 75 13-87 5-83 (705)
147 COG1199 DinG Rad3-related DNA 99.8 7.8E-17 1.7E-21 153.0 24.6 113 226-342 471-617 (654)
148 KOG0388 SNF2 family DNA-depend 99.8 4E-18 8.8E-23 150.8 14.5 124 222-345 1029-1157(1185)
149 KOG0951 RNA helicase BRR2, DEA 99.8 2.7E-17 5.8E-22 153.8 20.6 312 18-350 1143-1502(1674)
150 KOG1002 Nucleotide excision re 99.8 5.7E-17 1.2E-21 138.2 19.7 109 236-344 639-751 (791)
151 COG0610 Type I site-specific r 99.8 1.7E-16 3.7E-21 153.3 25.2 285 34-329 274-636 (962)
152 PF00271 Helicase_C: Helicase 99.8 1.3E-18 2.8E-23 117.4 7.2 78 253-330 1-78 (78)
153 PRK11747 dinG ATP-dependent DN 99.8 3.5E-15 7.7E-20 140.7 31.7 106 234-342 533-674 (697)
154 KOG0925 mRNA splicing factor A 99.8 1.3E-16 2.8E-21 135.7 19.3 298 23-342 52-387 (699)
155 PRK12901 secA preprotein trans 99.7 1.7E-16 3.8E-21 148.1 19.9 122 222-345 613-744 (1112)
156 KOG1015 Transcription regulato 99.7 4.5E-16 9.8E-21 142.0 20.9 118 223-340 1128-1273(1567)
157 PF02399 Herpes_ori_bp: Origin 99.7 3.8E-15 8.1E-20 136.4 22.7 290 34-342 50-388 (824)
158 PRK14873 primosome assembly pr 99.7 3.9E-15 8.4E-20 138.0 22.5 299 37-358 164-559 (665)
159 TIGR02562 cas3_yersinia CRISPR 99.7 3.6E-15 7.7E-20 140.1 21.0 309 18-332 408-882 (1110)
160 COG0553 HepA Superfamily II DN 99.6 4.1E-14 8.9E-19 139.9 23.9 322 17-343 337-823 (866)
161 smart00490 HELICc helicase sup 99.6 7.6E-16 1.6E-20 105.3 7.8 81 250-330 2-82 (82)
162 PF06862 DUF1253: Protein of u 99.6 9.5E-13 2.1E-17 114.8 28.2 292 60-351 33-424 (442)
163 PF00176 SNF2_N: SNF2 family N 99.6 2.3E-15 5.1E-20 129.8 11.6 142 32-182 24-175 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.6 6E-15 1.3E-19 107.0 8.4 136 32-183 3-140 (148)
165 COG0653 SecA Preprotein transl 99.5 3.2E-13 7E-18 124.7 16.3 316 18-343 78-546 (822)
166 KOG1016 Predicted DNA helicase 99.5 7.9E-13 1.7E-17 118.9 14.3 111 236-346 720-851 (1387)
167 PRK15483 type III restriction- 99.4 1.5E-10 3.3E-15 109.7 25.9 73 285-357 501-583 (986)
168 smart00488 DEXDc2 DEAD-like he 99.4 7.3E-12 1.6E-16 105.9 13.1 73 14-87 5-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.4 7.3E-12 1.6E-16 105.9 13.1 73 14-87 5-84 (289)
170 KOG2340 Uncharacterized conser 99.3 4.6E-10 9.9E-15 97.5 17.4 336 15-351 213-677 (698)
171 PF07517 SecA_DEAD: SecA DEAD- 99.2 2.2E-10 4.8E-15 94.2 13.3 130 14-151 74-210 (266)
172 KOG1133 Helicase of the DEAD s 99.2 2.6E-08 5.7E-13 89.6 27.0 118 222-342 613-780 (821)
173 KOG1001 Helicase-like transcri 99.2 5.3E-11 1.1E-15 110.2 6.8 101 237-337 541-643 (674)
174 COG3587 Restriction endonuclea 99.1 2.8E-09 6E-14 97.9 17.0 71 284-354 482-565 (985)
175 PF13872 AAA_34: P-loop contai 99.1 1.1E-09 2.3E-14 90.4 9.8 158 18-183 37-224 (303)
176 KOG0952 DNA/RNA helicase MER3/ 99.0 1E-09 2.2E-14 102.7 6.0 259 18-286 927-1206(1230)
177 COG3421 Uncharacterized protei 99.0 3.4E-08 7.3E-13 87.5 15.0 107 37-152 1-126 (812)
178 PF13086 AAA_11: AAA domain; P 98.9 8.9E-09 1.9E-13 85.5 9.3 69 18-86 1-75 (236)
179 PF13307 Helicase_C_2: Helicas 98.9 1.2E-08 2.7E-13 79.1 8.5 111 229-342 4-150 (167)
180 KOG1802 RNA helicase nonsense 98.9 7.5E-08 1.6E-12 86.3 13.8 85 9-99 401-485 (935)
181 KOG0921 Dosage compensation co 98.8 4.3E-08 9.3E-13 90.6 11.6 307 23-342 383-774 (1282)
182 PF02562 PhoH: PhoH-like prote 98.8 3.5E-09 7.6E-14 83.6 3.6 143 16-178 2-155 (205)
183 PF13604 AAA_30: AAA domain; P 98.8 4.4E-08 9.6E-13 78.2 8.6 123 18-178 1-130 (196)
184 KOG1131 RNA polymerase II tran 98.7 7.3E-06 1.6E-10 71.9 20.2 75 12-86 10-89 (755)
185 TIGR00596 rad1 DNA repair prot 98.7 1.7E-06 3.8E-11 82.6 17.4 68 114-181 7-74 (814)
186 PF09848 DUF2075: Uncharacteri 98.6 5.5E-07 1.2E-11 79.1 10.4 108 35-165 3-117 (352)
187 PRK10536 hypothetical protein; 98.5 1.2E-06 2.5E-11 71.4 10.2 143 16-178 57-211 (262)
188 KOG1132 Helicase of the DEAD s 98.5 6.4E-07 1.4E-11 83.1 9.5 103 236-340 562-720 (945)
189 PF13245 AAA_19: Part of AAA d 98.5 6.4E-07 1.4E-11 59.0 6.5 52 33-84 10-62 (76)
190 KOG1803 DNA helicase [Replicat 98.4 6E-07 1.3E-11 80.1 7.6 66 17-85 184-250 (649)
191 TIGR00376 DNA helicase, putati 98.4 2.3E-06 5.1E-11 80.5 11.5 67 17-86 156-223 (637)
192 TIGR01448 recD_rel helicase, p 98.4 3.1E-06 6.6E-11 80.9 12.1 126 17-178 322-452 (720)
193 PRK10875 recD exonuclease V su 98.4 2.6E-06 5.5E-11 79.3 10.5 142 19-178 153-301 (615)
194 TIGR01447 recD exodeoxyribonuc 98.4 5E-06 1.1E-10 77.2 12.2 141 20-178 147-295 (586)
195 PF00580 UvrD-helicase: UvrD/R 98.3 4.2E-06 9.2E-11 72.7 9.4 122 19-148 1-125 (315)
196 smart00492 HELICc3 helicase su 98.2 1.4E-05 3E-10 59.8 9.8 73 269-341 31-137 (141)
197 PF12340 DUF3638: Protein of u 98.2 1.7E-05 3.8E-10 63.4 10.1 120 4-128 11-144 (229)
198 smart00491 HELICc2 helicase su 98.2 1.5E-05 3.3E-10 59.7 9.0 70 272-341 31-138 (142)
199 KOG0298 DEAD box-containing he 98.2 7.3E-06 1.6E-10 79.2 8.9 148 33-185 374-556 (1394)
200 PF13401 AAA_22: AAA domain; P 98.2 9.5E-06 2.1E-10 60.5 7.6 116 32-179 3-125 (131)
201 PRK06526 transposase; Provisio 98.1 2.9E-05 6.4E-10 64.4 10.2 40 28-70 93-132 (254)
202 PRK04296 thymidine kinase; Pro 98.1 1.8E-05 3.8E-10 63.0 8.2 112 35-179 4-115 (190)
203 PRK08181 transposase; Validate 98.1 6.2E-05 1.3E-09 62.9 11.4 131 9-183 75-213 (269)
204 KOG0383 Predicted helicase [Ge 98.1 4.4E-07 9.4E-12 83.7 -1.7 63 235-298 631-696 (696)
205 TIGR02768 TraA_Ti Ti-type conj 98.0 0.00011 2.5E-09 70.7 13.5 61 17-80 351-412 (744)
206 COG1875 NYN ribonuclease and A 98.0 4.8E-05 1E-09 64.3 8.9 141 13-175 223-384 (436)
207 KOG0989 Replication factor C, 97.9 1.8E-05 4E-10 65.1 5.4 43 136-179 127-169 (346)
208 cd00009 AAA The AAA+ (ATPases 97.8 0.00022 4.8E-09 54.1 10.2 38 33-73 19-56 (151)
209 PRK12723 flagellar biosynthesi 97.8 0.00069 1.5E-08 59.7 14.1 123 34-184 175-302 (388)
210 PRK13889 conjugal transfer rel 97.8 0.00026 5.7E-09 69.4 11.6 124 17-178 345-470 (988)
211 PF13871 Helicase_C_4: Helicas 97.8 7.4E-05 1.6E-09 61.9 6.6 68 275-342 51-127 (278)
212 KOG1805 DNA replication helica 97.8 0.00012 2.5E-09 69.4 8.4 125 16-151 667-809 (1100)
213 PRK13826 Dtr system oriT relax 97.7 0.00068 1.5E-08 67.1 13.6 124 17-178 380-505 (1102)
214 PF00448 SRP54: SRP54-type pro 97.7 0.00034 7.3E-09 55.8 9.7 133 35-190 3-136 (196)
215 COG1419 FlhF Flagellar GTP-bin 97.7 0.00089 1.9E-08 58.2 12.7 133 32-191 202-336 (407)
216 smart00382 AAA ATPases associa 97.7 0.00015 3.2E-09 54.7 7.1 41 33-76 2-42 (148)
217 PRK14974 cell division protein 97.7 0.001 2.2E-08 57.5 12.5 131 34-190 141-275 (336)
218 PRK11889 flhF flagellar biosyn 97.7 0.001 2.2E-08 58.1 11.9 128 34-190 242-374 (436)
219 PRK06835 DNA replication prote 97.6 0.0012 2.7E-08 56.9 11.9 43 33-79 183-225 (329)
220 PRK11054 helD DNA helicase IV; 97.6 0.00035 7.6E-09 66.5 9.0 76 12-89 190-266 (684)
221 PRK10919 ATP-dependent DNA hel 97.6 0.00018 4E-09 68.7 6.9 69 18-88 2-71 (672)
222 cd01120 RecA-like_NTPases RecA 97.6 0.0031 6.7E-08 48.8 12.8 38 36-76 2-39 (165)
223 PRK05642 DNA replication initi 97.5 0.00084 1.8E-08 55.4 9.5 43 139-181 98-141 (234)
224 PRK06921 hypothetical protein; 97.5 0.0023 5E-08 53.7 12.1 38 33-72 117-154 (266)
225 PRK05707 DNA polymerase III su 97.5 0.00049 1.1E-08 59.6 8.2 41 18-58 3-47 (328)
226 cd01124 KaiC KaiC is a circadi 97.5 0.0035 7.5E-08 49.8 12.4 48 36-87 2-49 (187)
227 TIGR02760 TraI_TIGR conjugativ 97.5 0.028 6.1E-07 60.2 21.8 236 18-285 429-686 (1960)
228 PHA02533 17 large terminase pr 97.5 0.001 2.2E-08 61.4 10.1 122 18-151 59-182 (534)
229 PF00308 Bac_DnaA: Bacterial d 97.4 0.00093 2E-08 54.4 8.6 106 35-182 36-143 (219)
230 PRK14722 flhF flagellar biosyn 97.4 0.0016 3.5E-08 57.0 10.3 127 32-185 136-263 (374)
231 PRK06893 DNA replication initi 97.4 0.00053 1.1E-08 56.4 7.0 45 138-182 91-137 (229)
232 PRK08769 DNA polymerase III su 97.4 0.0016 3.5E-08 55.9 10.0 144 16-180 2-154 (319)
233 TIGR02785 addA_Gpos recombinat 97.4 0.0013 2.7E-08 67.5 10.8 124 18-149 1-126 (1232)
234 TIGR00362 DnaA chromosomal rep 97.4 0.0015 3.3E-08 58.8 10.3 37 35-72 138-174 (405)
235 KOG1513 Nuclear helicase MOP-3 97.4 0.00017 3.8E-09 66.8 4.2 158 16-180 262-455 (1300)
236 PRK05703 flhF flagellar biosyn 97.4 0.0037 8E-08 56.2 12.5 126 33-186 221-349 (424)
237 PRK08903 DnaA regulatory inact 97.4 0.0015 3.2E-08 53.8 9.3 41 139-180 91-132 (227)
238 PRK14087 dnaA chromosomal repl 97.4 0.0013 2.9E-08 59.6 9.7 107 34-181 142-250 (450)
239 PRK08084 DNA replication initi 97.4 0.0009 1.9E-08 55.3 7.9 36 34-72 46-81 (235)
240 PRK14956 DNA polymerase III su 97.4 0.00077 1.7E-08 60.6 8.0 21 35-55 42-62 (484)
241 PRK12377 putative replication 97.4 0.0018 3.9E-08 53.5 9.6 43 34-80 102-144 (248)
242 PF03354 Terminase_1: Phage Te 97.4 0.00045 9.9E-09 63.4 6.8 145 21-174 1-158 (477)
243 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0015 3.2E-08 53.8 9.2 23 33-55 38-60 (226)
244 TIGR01075 uvrD DNA helicase II 97.4 0.00067 1.5E-08 65.7 8.1 71 17-89 3-74 (715)
245 PF05970 PIF1: PIF1-like helic 97.3 0.00045 9.7E-09 61.1 6.1 55 18-75 1-61 (364)
246 PRK08727 hypothetical protein; 97.3 0.0016 3.5E-08 53.7 9.0 35 34-71 42-76 (233)
247 PF13177 DNA_pol3_delta2: DNA 97.3 0.00082 1.8E-08 51.9 6.7 124 34-180 20-143 (162)
248 PRK00149 dnaA chromosomal repl 97.3 0.0021 4.5E-08 58.7 10.3 105 34-181 149-255 (450)
249 cd01122 GP4d_helicase GP4d_hel 97.3 0.004 8.7E-08 52.8 11.4 78 5-85 2-79 (271)
250 TIGR01074 rep ATP-dependent DN 97.3 0.00065 1.4E-08 65.5 7.3 69 18-88 1-70 (664)
251 PRK14958 DNA polymerase III su 97.3 0.0013 2.8E-08 60.5 8.8 38 138-176 119-156 (509)
252 PRK11773 uvrD DNA-dependent he 97.3 0.00068 1.5E-08 65.6 7.2 71 17-89 8-79 (721)
253 PRK07952 DNA replication prote 97.3 0.0035 7.6E-08 51.7 10.1 48 20-70 78-133 (244)
254 PRK07003 DNA polymerase III su 97.2 0.0016 3.4E-08 61.5 8.7 38 138-176 119-156 (830)
255 PF05127 Helicase_RecD: Helica 97.2 0.00025 5.5E-09 54.8 3.0 124 37-180 1-124 (177)
256 TIGR02881 spore_V_K stage V sp 97.2 0.002 4.3E-08 54.2 8.7 21 33-53 42-62 (261)
257 PRK14964 DNA polymerase III su 97.2 0.0021 4.5E-08 58.4 9.1 22 34-55 36-57 (491)
258 PRK06871 DNA polymerase III su 97.2 0.002 4.4E-08 55.4 8.6 138 19-179 3-147 (325)
259 COG2256 MGS1 ATPase related to 97.2 0.002 4.2E-08 55.7 8.1 17 34-50 49-65 (436)
260 PRK14960 DNA polymerase III su 97.2 0.0023 5E-08 59.6 8.9 39 138-178 118-156 (702)
261 PF06745 KaiC: KaiC; InterPro 97.2 0.002 4.3E-08 53.0 7.9 132 32-178 18-159 (226)
262 PRK09183 transposase/IS protei 97.2 0.011 2.4E-07 49.5 12.3 39 30-71 99-137 (259)
263 PRK12323 DNA polymerase III su 97.1 0.0027 5.8E-08 59.1 9.0 39 138-177 124-162 (700)
264 COG1435 Tdk Thymidine kinase [ 97.1 0.011 2.3E-07 46.1 10.9 104 34-165 5-108 (201)
265 PRK07764 DNA polymerase III su 97.1 0.0025 5.4E-08 61.9 9.1 39 137-176 119-157 (824)
266 PRK08116 hypothetical protein; 97.1 0.0091 2E-07 50.3 11.2 41 34-78 115-155 (268)
267 PRK14949 DNA polymerase III su 97.1 0.0024 5.2E-08 61.5 8.3 37 138-175 119-155 (944)
268 PRK12402 replication factor C 97.1 0.0056 1.2E-07 53.8 10.2 38 138-176 125-162 (337)
269 PF01695 IstB_IS21: IstB-like 97.1 0.00093 2E-08 52.4 4.6 66 9-78 17-88 (178)
270 PTZ00293 thymidine kinase; Pro 97.0 0.0085 1.8E-07 47.8 9.8 39 33-74 4-42 (211)
271 PLN03025 replication factor C 97.0 0.008 1.7E-07 52.2 10.7 40 138-179 99-138 (319)
272 PRK12422 chromosomal replicati 97.0 0.0077 1.7E-07 54.6 10.8 36 34-72 142-177 (445)
273 PRK07993 DNA polymerase III su 97.0 0.0032 7E-08 54.7 8.1 140 18-179 2-148 (334)
274 PRK08533 flagellar accessory p 97.0 0.014 3.1E-07 47.9 11.5 53 31-87 22-74 (230)
275 PRK14961 DNA polymerase III su 97.0 0.003 6.5E-08 55.9 7.9 37 138-175 119-155 (363)
276 PRK00411 cdc6 cell division co 97.0 0.006 1.3E-07 54.9 9.9 36 34-70 56-91 (394)
277 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.008 1.7E-07 49.8 9.8 52 32-87 20-71 (237)
278 TIGR01547 phage_term_2 phage t 97.0 0.0029 6.2E-08 56.9 7.8 148 35-191 3-152 (396)
279 PHA03368 DNA packaging termina 97.0 0.004 8.7E-08 57.7 8.3 134 33-180 254-391 (738)
280 PRK12727 flagellar biosynthesi 96.9 0.035 7.6E-07 50.7 14.0 40 31-71 348-387 (559)
281 KOG0739 AAA+-type ATPase [Post 96.9 0.03 6.6E-07 46.6 12.3 120 34-199 167-298 (439)
282 PRK14712 conjugal transfer nic 96.9 0.0061 1.3E-07 62.8 10.1 63 17-80 834-900 (1623)
283 PRK00771 signal recognition pa 96.9 0.02 4.4E-07 51.5 12.4 130 34-190 96-228 (437)
284 CHL00181 cbbX CbbX; Provisiona 96.9 0.008 1.7E-07 51.1 9.4 23 33-55 59-81 (287)
285 TIGR01073 pcrA ATP-dependent D 96.9 0.0033 7.2E-08 61.1 8.0 71 17-89 3-74 (726)
286 PF05876 Terminase_GpA: Phage 96.9 0.0024 5.2E-08 59.6 6.6 126 17-151 15-147 (557)
287 PRK13709 conjugal transfer nic 96.9 0.0083 1.8E-07 62.6 10.9 63 17-80 966-1032(1747)
288 PRK14959 DNA polymerase III su 96.9 0.005 1.1E-07 57.4 8.5 24 34-57 39-62 (624)
289 PRK14962 DNA polymerase III su 96.9 0.008 1.7E-07 54.8 9.7 21 35-55 38-58 (472)
290 PRK05896 DNA polymerase III su 96.9 0.0061 1.3E-07 56.6 8.9 24 34-57 39-62 (605)
291 TIGR02880 cbbX_cfxQ probable R 96.9 0.01 2.3E-07 50.4 9.8 20 33-52 58-77 (284)
292 COG4626 Phage terminase-like p 96.9 0.008 1.7E-07 54.4 9.3 149 17-177 60-223 (546)
293 TIGR01425 SRP54_euk signal rec 96.9 0.024 5.2E-07 50.7 12.2 131 35-190 102-235 (429)
294 PRK14088 dnaA chromosomal repl 96.8 0.018 3.9E-07 52.3 11.6 38 34-72 131-168 (440)
295 PRK05986 cob(I)alamin adenolsy 96.8 0.0071 1.5E-07 47.4 7.8 142 31-185 20-164 (191)
296 PRK14086 dnaA chromosomal repl 96.8 0.0098 2.1E-07 55.3 9.9 104 35-180 316-421 (617)
297 PRK08691 DNA polymerase III su 96.8 0.0057 1.2E-07 57.6 8.4 38 138-176 119-156 (709)
298 COG0470 HolB ATPase involved i 96.8 0.011 2.3E-07 51.7 9.9 121 33-176 23-146 (325)
299 PRK14952 DNA polymerase III su 96.8 0.0061 1.3E-07 56.9 8.6 38 138-176 118-155 (584)
300 PHA02544 44 clamp loader, smal 96.8 0.0094 2E-07 51.8 9.3 38 139-176 101-138 (316)
301 PF13173 AAA_14: AAA domain 96.8 0.026 5.6E-07 41.7 10.3 41 139-183 62-102 (128)
302 PRK14957 DNA polymerase III su 96.8 0.011 2.4E-07 54.6 10.0 38 138-176 119-156 (546)
303 PRK07994 DNA polymerase III su 96.8 0.0044 9.5E-08 58.3 7.4 37 138-175 119-155 (647)
304 COG3973 Superfamily I DNA and 96.8 0.0051 1.1E-07 55.9 7.4 82 5-87 192-283 (747)
305 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.019 4.2E-07 43.7 9.5 131 35-185 4-144 (159)
306 PRK14965 DNA polymerase III su 96.8 0.0079 1.7E-07 56.5 8.9 39 137-176 118-156 (576)
307 PF00004 AAA: ATPase family as 96.8 0.0053 1.1E-07 45.5 6.5 16 36-51 1-16 (132)
308 PRK14951 DNA polymerase III su 96.8 0.0063 1.4E-07 57.1 8.1 22 35-56 40-61 (618)
309 PHA00729 NTP-binding motif con 96.7 0.012 2.6E-07 47.5 8.7 18 34-51 18-35 (226)
310 PRK06964 DNA polymerase III su 96.7 0.0052 1.1E-07 53.3 7.1 40 19-58 2-46 (342)
311 cd01121 Sms Sms (bacterial rad 96.7 0.019 4.2E-07 50.6 10.7 51 33-87 82-132 (372)
312 PRK11331 5-methylcytosine-spec 96.7 0.012 2.7E-07 52.5 9.4 33 19-51 180-212 (459)
313 PRK06645 DNA polymerase III su 96.7 0.0077 1.7E-07 55.2 8.4 22 34-55 44-65 (507)
314 PRK11823 DNA repair protein Ra 96.7 0.013 2.8E-07 53.2 9.8 51 33-87 80-130 (446)
315 PHA03333 putative ATPase subun 96.7 0.026 5.6E-07 52.8 11.6 71 17-89 168-241 (752)
316 PRK06731 flhF flagellar biosyn 96.7 0.057 1.2E-06 45.3 12.8 128 34-190 76-208 (270)
317 COG0593 DnaA ATPase involved i 96.7 0.01 2.3E-07 52.3 8.6 44 139-182 176-221 (408)
318 PRK06067 flagellar accessory p 96.7 0.048 1E-06 45.1 12.3 51 33-87 25-75 (234)
319 PTZ00112 origin recognition co 96.7 0.037 8.1E-07 53.4 12.5 40 138-178 869-909 (1164)
320 PRK06090 DNA polymerase III su 96.7 0.01 2.2E-07 51.0 8.3 140 18-180 3-149 (319)
321 PRK08451 DNA polymerase III su 96.7 0.013 2.8E-07 53.9 9.4 39 137-176 116-154 (535)
322 PRK05563 DNA polymerase III su 96.7 0.0082 1.8E-07 56.2 8.2 22 34-55 39-60 (559)
323 COG1484 DnaC DNA replication p 96.7 0.0024 5.2E-08 53.2 4.2 72 9-84 74-152 (254)
324 PF02572 CobA_CobO_BtuR: ATP:c 96.6 0.046 1E-06 42.2 10.8 139 34-184 4-144 (172)
325 TIGR00678 holB DNA polymerase 96.6 0.01 2.3E-07 47.1 7.7 25 34-58 15-39 (188)
326 PRK08939 primosomal protein Dn 96.6 0.024 5.1E-07 48.7 10.2 36 33-71 156-191 (306)
327 cd00984 DnaB_C DnaB helicase C 96.6 0.019 4.2E-07 47.7 9.5 40 30-72 10-50 (242)
328 KOG0991 Replication factor C, 96.6 0.0066 1.4E-07 48.5 5.9 39 137-176 112-150 (333)
329 PRK00440 rfc replication facto 96.6 0.034 7.3E-07 48.4 11.2 37 139-176 103-139 (319)
330 PRK14955 DNA polymerase III su 96.6 0.009 1.9E-07 53.6 7.6 23 35-57 40-62 (397)
331 PRK12724 flagellar biosynthesi 96.5 0.052 1.1E-06 48.3 11.8 124 34-189 224-354 (432)
332 PRK14963 DNA polymerase III su 96.5 0.011 2.4E-07 54.4 8.0 20 36-55 39-58 (504)
333 PRK10867 signal recognition pa 96.5 0.076 1.7E-06 47.8 13.0 36 35-72 102-137 (433)
334 PRK05973 replicative DNA helic 96.5 0.0078 1.7E-07 49.3 6.2 58 26-87 57-114 (237)
335 TIGR00708 cobA cob(I)alamin ad 96.5 0.0061 1.3E-07 47.0 5.2 133 34-185 6-146 (173)
336 PF14617 CMS1: U3-containing 9 96.5 0.0095 2.1E-07 49.0 6.6 85 64-149 126-212 (252)
337 PRK12726 flagellar biosynthesi 96.5 0.04 8.8E-07 48.2 10.5 37 33-72 206-242 (407)
338 COG2805 PilT Tfp pilus assembl 96.5 0.025 5.4E-07 47.2 8.8 116 34-168 126-248 (353)
339 TIGR00064 ftsY signal recognit 96.5 0.11 2.3E-06 43.9 13.0 133 34-191 73-214 (272)
340 PRK09112 DNA polymerase III su 96.5 0.028 6.1E-07 49.3 9.8 42 137-179 140-181 (351)
341 cd03115 SRP The signal recogni 96.5 0.14 3.1E-06 40.0 13.0 33 36-71 3-35 (173)
342 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.04 8.8E-07 45.4 10.2 51 32-86 19-69 (229)
343 PRK07940 DNA polymerase III su 96.4 0.017 3.7E-07 51.4 8.3 41 137-179 116-156 (394)
344 PRK07471 DNA polymerase III su 96.4 0.012 2.5E-07 51.9 7.2 145 22-179 23-181 (365)
345 KOG2028 ATPase related to the 96.4 0.023 5E-07 48.7 8.4 18 34-51 163-180 (554)
346 PRK14954 DNA polymerase III su 96.4 0.011 2.4E-07 55.6 7.3 24 34-57 39-62 (620)
347 PRK14969 DNA polymerase III su 96.4 0.015 3.3E-07 54.0 8.1 39 137-176 118-156 (527)
348 PRK09111 DNA polymerase III su 96.4 0.024 5.2E-07 53.3 9.4 39 137-176 131-169 (598)
349 COG2909 MalT ATP-dependent tra 96.4 0.012 2.6E-07 55.8 7.4 136 32-180 36-171 (894)
350 PRK14723 flhF flagellar biosyn 96.3 0.038 8.2E-07 53.0 10.5 124 33-183 185-309 (767)
351 COG1223 Predicted ATPase (AAA+ 96.3 0.044 9.5E-07 44.8 9.2 47 139-185 211-268 (368)
352 PF02456 Adeno_IVa2: Adenoviru 96.3 0.014 3.1E-07 48.6 6.7 41 36-77 90-130 (369)
353 PRK06647 DNA polymerase III su 96.3 0.017 3.6E-07 54.0 8.0 21 35-55 40-60 (563)
354 TIGR00959 ffh signal recogniti 96.3 0.061 1.3E-06 48.4 11.2 35 35-72 101-136 (428)
355 COG2109 BtuR ATP:corrinoid ade 96.3 0.036 7.8E-07 42.9 8.3 141 34-186 29-172 (198)
356 PRK07414 cob(I)yrinic acid a,c 96.3 0.22 4.7E-06 38.6 12.7 138 31-185 19-164 (178)
357 TIGR02760 TraI_TIGR conjugativ 96.3 0.024 5.2E-07 60.7 9.9 62 17-80 1018-1084(1960)
358 KOG0733 Nuclear AAA ATPase (VC 96.3 0.044 9.5E-07 50.3 10.0 80 138-232 604-694 (802)
359 PF05621 TniB: Bacterial TniB 96.3 0.038 8.2E-07 46.6 9.0 120 34-179 62-189 (302)
360 PF00265 TK: Thymidine kinase; 96.2 0.011 2.5E-07 46.1 5.3 36 36-74 4-39 (176)
361 COG1444 Predicted P-loop ATPas 96.2 0.05 1.1E-06 51.7 10.2 152 8-180 204-357 (758)
362 TIGR00767 rho transcription te 96.2 0.019 4.1E-07 50.5 7.0 31 30-61 165-195 (415)
363 COG2874 FlaH Predicted ATPases 96.2 0.14 3.1E-06 40.6 11.0 128 33-181 28-169 (235)
364 PRK04195 replication factor C 96.2 0.038 8.3E-07 51.0 9.5 19 33-51 39-57 (482)
365 PRK09376 rho transcription ter 96.1 0.019 4.2E-07 50.2 6.8 29 32-61 168-196 (416)
366 PRK08699 DNA polymerase III su 96.1 0.031 6.7E-07 48.5 8.1 145 19-178 2-152 (325)
367 PRK14950 DNA polymerase III su 96.1 0.026 5.6E-07 53.4 8.2 21 35-55 40-60 (585)
368 KOG0738 AAA+-type ATPase [Post 96.1 0.04 8.6E-07 47.7 8.3 17 34-50 246-262 (491)
369 TIGR03015 pepcterm_ATPase puta 96.1 0.045 9.8E-07 46.3 8.9 33 19-51 24-61 (269)
370 PRK06620 hypothetical protein; 96.1 0.017 3.6E-07 46.9 5.9 18 34-51 45-62 (214)
371 PRK13342 recombination factor 96.1 0.045 9.8E-07 49.5 9.3 18 34-51 37-54 (413)
372 TIGR02237 recomb_radB DNA repa 96.0 0.066 1.4E-06 43.4 9.4 39 32-73 11-49 (209)
373 TIGR02397 dnaX_nterm DNA polym 96.0 0.032 6.9E-07 49.4 8.0 20 34-53 37-56 (355)
374 COG3972 Superfamily I DNA and 96.0 0.052 1.1E-06 48.5 8.8 69 18-88 162-230 (660)
375 TIGR03600 phage_DnaB phage rep 96.0 0.079 1.7E-06 48.1 10.6 117 29-152 190-319 (421)
376 COG1222 RPT1 ATP-dependent 26S 96.0 0.02 4.4E-07 48.9 6.2 46 2-50 155-202 (406)
377 TIGR03689 pup_AAA proteasome A 96.0 0.057 1.2E-06 49.6 9.5 18 33-50 216-233 (512)
378 PRK13833 conjugal transfer pro 96.0 0.013 2.8E-07 50.5 5.1 57 19-76 129-186 (323)
379 PRK14953 DNA polymerase III su 96.0 0.065 1.4E-06 49.3 9.8 19 36-54 41-59 (486)
380 TIGR02782 TrbB_P P-type conjug 96.0 0.016 3.4E-07 49.6 5.6 57 19-76 117-174 (299)
381 PRK14721 flhF flagellar biosyn 95.9 0.12 2.7E-06 46.2 11.2 24 32-55 190-213 (420)
382 PRK06904 replicative DNA helic 95.9 0.15 3.4E-06 46.7 12.0 117 30-151 218-347 (472)
383 PF03796 DnaB_C: DnaB-like hel 95.9 0.053 1.1E-06 45.6 8.5 42 30-73 16-57 (259)
384 PF05729 NACHT: NACHT domain 95.9 0.073 1.6E-06 41.1 8.8 26 35-60 2-27 (166)
385 TIGR02655 circ_KaiC circadian 95.9 0.097 2.1E-06 48.4 10.7 51 33-87 263-313 (484)
386 PRK10917 ATP-dependent DNA hel 95.9 0.08 1.7E-06 51.2 10.5 79 234-312 309-392 (681)
387 TIGR02928 orc1/cdc6 family rep 95.8 0.03 6.5E-07 49.8 7.2 24 34-58 41-64 (365)
388 PRK08058 DNA polymerase III su 95.8 0.049 1.1E-06 47.5 8.3 39 138-177 110-148 (329)
389 KOG0298 DEAD box-containing he 95.8 0.014 3.1E-07 57.5 5.2 99 234-337 1220-1319(1394)
390 PRK14948 DNA polymerase III su 95.8 0.04 8.7E-07 52.2 8.1 24 34-57 39-62 (620)
391 PRK07399 DNA polymerase III su 95.8 0.068 1.5E-06 46.2 8.8 60 117-179 104-163 (314)
392 TIGR03499 FlhF flagellar biosy 95.8 0.027 5.8E-07 47.9 6.3 38 33-72 194-232 (282)
393 PRK13894 conjugal transfer ATP 95.8 0.015 3.3E-07 50.2 4.7 57 19-76 133-190 (319)
394 COG4962 CpaF Flp pilus assembl 95.7 0.014 3.1E-07 49.7 4.3 58 15-76 154-212 (355)
395 COG1474 CDC6 Cdc6-related prot 95.7 0.18 4E-06 44.5 11.3 27 34-61 43-69 (366)
396 PRK07133 DNA polymerase III su 95.7 0.03 6.4E-07 53.4 6.7 21 35-55 42-62 (725)
397 PRK13341 recombination factor 95.7 0.065 1.4E-06 51.7 9.0 18 34-51 53-70 (725)
398 COG0467 RAD55 RecA-superfamily 95.7 0.027 5.9E-07 47.4 5.9 53 31-87 21-73 (260)
399 PRK08506 replicative DNA helic 95.7 0.14 3.1E-06 47.0 10.9 115 30-151 189-315 (472)
400 PRK10416 signal recognition pa 95.7 0.48 1E-05 41.0 13.4 36 33-71 114-149 (318)
401 COG0210 UvrD Superfamily I DNA 95.6 0.037 7.9E-07 53.5 7.4 70 18-89 2-72 (655)
402 PRK04328 hypothetical protein; 95.6 0.027 5.8E-07 47.0 5.6 52 32-87 22-73 (249)
403 PF03237 Terminase_6: Terminas 95.6 0.34 7.4E-06 43.1 13.2 144 37-194 1-154 (384)
404 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.042 9.1E-07 46.1 6.7 38 32-72 35-72 (259)
405 TIGR00416 sms DNA repair prote 95.6 0.11 2.3E-06 47.4 9.6 51 33-87 94-144 (454)
406 PRK06305 DNA polymerase III su 95.5 0.11 2.4E-06 47.4 9.6 24 34-57 40-63 (451)
407 PF01443 Viral_helicase1: Vira 95.5 0.02 4.4E-07 47.3 4.6 15 36-50 1-15 (234)
408 PRK06995 flhF flagellar biosyn 95.5 0.15 3.3E-06 46.5 10.1 25 33-57 256-280 (484)
409 PRK08006 replicative DNA helic 95.4 0.34 7.3E-06 44.5 12.2 117 30-151 221-349 (471)
410 TIGR02639 ClpA ATP-dependent C 95.4 0.13 2.9E-06 50.1 10.2 23 33-55 203-225 (731)
411 PRK14873 primosome assembly pr 95.3 0.2 4.2E-06 48.0 10.7 91 221-312 172-266 (665)
412 cd01128 rho_factor Transcripti 95.3 0.043 9.4E-07 45.5 5.7 31 29-60 12-42 (249)
413 PRK08840 replicative DNA helic 95.3 0.33 7.1E-06 44.5 11.7 123 24-151 208-342 (464)
414 TIGR02525 plasmid_TraJ plasmid 95.3 0.054 1.2E-06 47.8 6.5 38 32-70 148-185 (372)
415 TIGR00643 recG ATP-dependent D 95.3 0.15 3.2E-06 48.9 10.0 79 234-312 283-366 (630)
416 KOG0742 AAA+-type ATPase [Post 95.3 0.069 1.5E-06 46.6 6.8 17 34-50 385-401 (630)
417 PRK05580 primosome assembly pr 95.3 0.31 6.7E-06 47.1 12.0 77 235-312 190-267 (679)
418 TIGR01243 CDC48 AAA family ATP 95.2 0.13 2.7E-06 50.4 9.5 19 32-50 211-229 (733)
419 PRK13851 type IV secretion sys 95.2 0.027 5.8E-07 49.1 4.4 43 30-76 159-201 (344)
420 KOG0730 AAA+-type ATPase [Post 95.2 0.34 7.3E-06 45.2 11.4 33 15-50 453-485 (693)
421 CHL00176 ftsH cell division pr 95.2 0.15 3.3E-06 48.5 9.7 18 33-50 216-233 (638)
422 TIGR00635 ruvB Holliday juncti 95.2 0.055 1.2E-06 46.8 6.4 18 34-51 31-48 (305)
423 COG1110 Reverse gyrase [DNA re 95.2 0.086 1.9E-06 51.3 7.9 73 222-294 112-190 (1187)
424 COG0552 FtsY Signal recognitio 95.2 0.89 1.9E-05 39.0 13.0 130 35-190 141-280 (340)
425 PRK07004 replicative DNA helic 95.2 0.23 4.9E-06 45.5 10.4 116 30-151 210-337 (460)
426 COG1200 RecG RecG-like helicas 95.1 0.24 5.2E-06 46.4 10.3 86 226-311 302-392 (677)
427 COG2804 PulE Type II secretory 95.1 0.028 6.1E-07 50.5 4.3 42 19-61 242-285 (500)
428 PRK03992 proteasome-activating 95.1 0.19 4.2E-06 45.0 9.6 18 33-50 165-182 (389)
429 cd01393 recA_like RecA is a b 95.1 0.082 1.8E-06 43.4 6.8 43 32-74 18-63 (226)
430 PRK13900 type IV secretion sys 95.0 0.03 6.5E-07 48.7 4.1 39 31-73 158-196 (332)
431 COG1618 Predicted nucleotide k 95.0 0.096 2.1E-06 39.5 6.1 116 34-164 6-128 (179)
432 PRK14971 DNA polymerase III su 95.0 0.14 3E-06 48.6 8.6 39 138-178 121-159 (614)
433 TIGR00665 DnaB replicative DNA 95.0 0.34 7.4E-06 44.2 11.0 114 31-151 193-318 (434)
434 PRK11034 clpA ATP-dependent Cl 94.9 0.41 8.9E-06 46.6 11.8 22 33-54 207-228 (758)
435 PRK12608 transcription termina 94.9 0.31 6.8E-06 42.7 9.9 38 22-60 119-159 (380)
436 KOG0734 AAA+-type ATPase conta 94.9 0.12 2.7E-06 46.7 7.4 46 139-184 397-452 (752)
437 TIGR03880 KaiC_arch_3 KaiC dom 94.9 0.073 1.6E-06 43.7 5.9 52 32-87 15-66 (224)
438 TIGR02688 conserved hypothetic 94.8 0.13 2.8E-06 45.7 7.5 49 4-52 173-228 (449)
439 PRK05748 replicative DNA helic 94.8 0.37 8E-06 44.2 10.9 115 31-151 201-327 (448)
440 TIGR00595 priA primosomal prot 94.8 0.15 3.2E-06 47.3 8.3 77 235-312 25-102 (505)
441 PF06733 DEAD_2: DEAD_2; Inte 94.8 0.015 3.2E-07 45.6 1.6 41 111-152 116-159 (174)
442 PF12846 AAA_10: AAA-like doma 94.8 0.044 9.5E-07 47.2 4.6 40 33-75 1-40 (304)
443 COG2812 DnaX DNA polymerase II 94.7 0.073 1.6E-06 48.7 5.9 17 34-50 39-55 (515)
444 PHA00012 I assembly protein 94.7 1.2 2.5E-05 38.3 12.4 27 36-62 4-30 (361)
445 TIGR02784 addA_alphas double-s 94.7 0.089 1.9E-06 54.2 7.0 100 32-131 9-124 (1141)
446 PRK08760 replicative DNA helic 94.6 0.29 6.2E-06 45.1 9.6 114 32-151 228-352 (476)
447 TIGR02655 circ_KaiC circadian 94.6 0.067 1.5E-06 49.4 5.6 53 32-88 20-73 (484)
448 TIGR01241 FtsH_fam ATP-depende 94.6 0.23 5E-06 46.1 9.1 18 33-50 88-105 (495)
449 PF03969 AFG1_ATPase: AFG1-lik 94.6 0.58 1.3E-05 41.3 10.9 18 33-50 62-79 (362)
450 COG1198 PriA Primosomal protei 94.5 0.27 5.9E-06 47.2 9.3 92 218-310 226-320 (730)
451 COG1197 Mfd Transcription-repa 94.5 0.38 8.1E-06 48.0 10.3 78 233-310 641-723 (1139)
452 PRK09087 hypothetical protein; 94.5 0.16 3.5E-06 41.6 6.9 38 140-179 89-126 (226)
453 KOG1807 Helicases [Replication 94.4 0.051 1.1E-06 51.0 4.3 67 19-85 379-448 (1025)
454 KOG0737 AAA+-type ATPase [Post 94.4 0.91 2E-05 39.4 11.3 19 32-50 126-144 (386)
455 PRK05917 DNA polymerase III su 94.4 0.48 1E-05 40.2 9.7 43 137-180 94-136 (290)
456 PF06309 Torsin: Torsin; Inte 94.4 0.19 4.1E-06 36.4 6.3 51 37-87 57-112 (127)
457 PF01637 Arch_ATPase: Archaeal 94.4 0.048 1E-06 44.9 3.8 25 33-58 20-44 (234)
458 PRK04841 transcriptional regul 94.4 0.22 4.7E-06 50.3 9.1 41 140-180 123-163 (903)
459 PF03266 NTPase_1: NTPase; In 94.4 0.023 4.9E-07 44.1 1.7 34 138-174 95-130 (168)
460 PRK14970 DNA polymerase III su 94.4 0.25 5.4E-06 44.0 8.5 20 34-53 40-59 (367)
461 TIGR00580 mfd transcription-re 94.3 0.35 7.6E-06 48.2 10.0 78 234-311 499-581 (926)
462 COG0541 Ffh Signal recognition 94.3 1 2.2E-05 40.0 11.6 130 36-190 103-235 (451)
463 TIGR01243 CDC48 AAA family ATP 94.3 0.24 5.1E-06 48.6 8.7 18 33-50 487-504 (733)
464 PF00437 T2SE: Type II/IV secr 94.2 0.052 1.1E-06 46.0 3.7 42 31-75 125-166 (270)
465 cd01130 VirB11-like_ATPase Typ 94.2 0.091 2E-06 41.7 4.9 41 18-59 9-50 (186)
466 PHA03372 DNA packaging termina 94.2 0.22 4.8E-06 46.1 7.7 127 33-180 202-338 (668)
467 cd01129 PulE-GspE PulE/GspE Th 94.2 0.081 1.8E-06 44.5 4.7 46 10-59 58-105 (264)
468 COG1219 ClpX ATP-dependent pro 94.2 0.041 9E-07 46.3 2.8 19 33-51 97-115 (408)
469 PHA00350 putative assembly pro 94.1 0.61 1.3E-05 41.4 10.1 26 36-61 4-30 (399)
470 KOG0729 26S proteasome regulat 94.1 0.18 3.8E-06 41.5 6.2 41 33-80 211-251 (435)
471 KOG1513 Nuclear helicase MOP-3 94.0 0.049 1.1E-06 51.4 3.3 63 277-339 849-920 (1300)
472 KOG0780 Signal recognition par 94.0 0.27 5.8E-06 42.7 7.3 130 36-190 104-236 (483)
473 TIGR02012 tigrfam_recA protein 94.0 0.14 3E-06 44.2 5.7 43 34-79 56-98 (321)
474 PF13555 AAA_29: P-loop contai 94.0 0.016 3.4E-07 36.1 0.0 18 33-50 23-40 (62)
475 COG1132 MdlB ABC-type multidru 94.0 0.52 1.1E-05 44.8 10.2 21 30-50 352-372 (567)
476 KOG0740 AAA+-type ATPase [Post 93.9 0.89 1.9E-05 40.6 10.7 78 139-233 246-336 (428)
477 PRK09165 replicative DNA helic 93.9 0.56 1.2E-05 43.5 10.0 116 33-151 217-354 (497)
478 KOG0732 AAA+-type ATPase conta 93.9 0.43 9.3E-06 47.3 9.4 68 119-187 345-422 (1080)
479 cd01394 radB RadB. The archaea 93.9 0.092 2E-06 42.9 4.4 36 33-71 19-54 (218)
480 PRK05595 replicative DNA helic 93.8 0.73 1.6E-05 42.2 10.5 115 30-151 198-324 (444)
481 cd00983 recA RecA is a bacter 93.8 0.15 3.2E-06 44.0 5.6 43 34-79 56-98 (325)
482 PF13481 AAA_25: AAA domain; P 93.8 0.2 4.3E-06 39.9 6.1 62 26-88 24-93 (193)
483 cd01131 PilT Pilus retraction 93.8 0.099 2.1E-06 41.9 4.3 36 35-72 3-38 (198)
484 CHL00095 clpC Clp protease ATP 93.8 0.26 5.6E-06 48.9 8.0 23 33-55 200-222 (821)
485 TIGR02640 gas_vesic_GvpN gas v 93.8 0.057 1.2E-06 45.4 3.1 29 24-52 12-40 (262)
486 COG1074 RecB ATP-dependent exo 93.7 0.13 2.8E-06 52.7 6.0 56 32-87 15-72 (1139)
487 COG0464 SpoVK ATPases of the A 93.7 0.63 1.4E-05 43.3 10.1 20 32-51 275-294 (494)
488 PRK05564 DNA polymerase III su 93.7 0.52 1.1E-05 40.9 9.0 38 138-176 93-130 (313)
489 PRK09361 radB DNA repair and r 93.7 0.11 2.3E-06 42.7 4.5 38 33-73 23-60 (225)
490 PRK10436 hypothetical protein; 93.7 0.095 2.1E-06 47.7 4.4 40 19-59 202-243 (462)
491 PRK05636 replicative DNA helic 93.7 0.75 1.6E-05 42.7 10.2 114 32-151 264-388 (505)
492 PRK10865 protein disaggregatio 93.6 0.43 9.4E-06 47.4 9.2 22 34-55 200-221 (857)
493 TIGR03346 chaperone_ClpB ATP-d 93.6 0.47 1E-05 47.3 9.4 19 34-52 195-213 (852)
494 KOG1132 Helicase of the DEAD s 93.6 1.9 4.2E-05 41.7 12.7 42 13-55 17-62 (945)
495 PF08423 Rad51: Rad51; InterP 93.6 0.18 4E-06 42.2 5.7 41 35-75 40-83 (256)
496 PRK06321 replicative DNA helic 93.5 1.5 3.2E-05 40.4 11.8 113 32-151 225-349 (472)
497 cd01125 repA Hexameric Replica 93.5 0.82 1.8E-05 37.9 9.5 37 35-71 3-48 (239)
498 KOG0744 AAA+-type ATPase [Post 93.4 0.84 1.8E-05 38.9 9.0 67 33-100 177-257 (423)
499 KOG0701 dsRNA-specific nucleas 93.3 0.045 9.8E-07 56.2 2.0 93 237-329 294-398 (1606)
500 KOG2228 Origin recognition com 93.3 1.7 3.7E-05 37.3 10.7 65 124-188 123-188 (408)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-65 Score=396.77 Aligned_cols=369 Identities=69% Similarity=1.079 Sum_probs=357.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|||.+++.+.+.+.||+.|+.+|+.|++++++|++++.++..|+|||.++.+.++..+.-+.+..++++++|+++|+.|.
T Consensus 32 Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi 111 (400)
T KOG0328|consen 32 MGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQI 111 (400)
T ss_pred cCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988888888877766666899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
.+.+..+....++++..+.|+.+..++.+.+..+.+++.+||.+.+.+.++..+....+.++|+||++.+.+.++..++.
T Consensus 112 ~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiy 191 (400)
T KOG0328|consen 112 QKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIY 191 (400)
T ss_pred HHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHH
Confidence 99999999999999999999999888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEE
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv 240 (369)
.+++.+|+..|++++|||++.+..+..+.++.+|+.+.+.+++.+.+.+.++++....++++.+.+..+........++|
T Consensus 192 diyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavI 271 (400)
T KOG0328|consen 192 DIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVI 271 (400)
T ss_pred HHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchh
Q 017573 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 320 (369)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~ 320 (369)
||+++..+.++.+.++..+..+...||+|+.++|++++++|++|+.+||++|+...+|+|+|.++.||.+++|.+...|+
T Consensus 272 FcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YI 351 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI 351 (400)
T ss_pred EecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhcC
Q 017573 321 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369 (369)
Q Consensus 321 Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
+|+||.||.|++|.++-|+...|.+.+..++++|...+.++|-++.+++
T Consensus 352 HRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred hhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 9999999999999999999999999999999999999999999998875
No 2
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-60 Score=424.97 Aligned_cols=360 Identities=32% Similarity=0.478 Sum_probs=321.2
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-------CCCccEEEEcCC
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVQCQALVLAPT 73 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-------~~~~~~liv~P~ 73 (369)
+||++.+.++|..+||..|+|+|.++++.+++|++++++||||||||+++++++++.+... ..++++||++|+
T Consensus 13 ~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 13 FALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 6899999999999999999999999999999999999999999999999999999877532 123579999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhcc
Q 017573 74 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 153 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~ 153 (369)
++|+.|+.+.+..+....++++..+.|+.....+...+..+++|+|+||+.+..++....+....++++|+||||++.+.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~ 172 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDL 172 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhc
Confidence 99999999999999888899999999988877776667778899999999999999988888999999999999999999
Q ss_pred CcHHHHHHHHhhCCc--cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHH
Q 017573 154 GFKDQIYDIFQLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE 231 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (369)
++...+..++..++. ..+.+++|||++..........+..+..+...........+.+.+... ....+...+..++.
T Consensus 173 ~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~ 251 (423)
T PRK04837 173 GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRLLQTLIE 251 (423)
T ss_pred ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHHHHHHHH
Confidence 999999999988875 455788999999888888888888887777665555445555544433 34557778888887
Q ss_pred hccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec
Q 017573 232 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 311 (369)
Q Consensus 232 ~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 311 (369)
.....++||||++.+.++.+++.|...+.++..+||+++.++|.++++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 252 ~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d 331 (423)
T PRK04837 252 EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYD 331 (423)
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccC
Q 017573 312 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 361 (369)
Q Consensus 312 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (369)
+|.+..+|.||+||+||.|+.|.+++|+.+.+...+..+++++...+...
T Consensus 332 ~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 332 LPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred CCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999888876543
No 3
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.8e-60 Score=427.26 Aligned_cols=357 Identities=37% Similarity=0.619 Sum_probs=326.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|||++.+.++|.++||.+|+|+|+++++.+.++++++++||||+|||+++++++++.+.......+++|++|+++|+.|+
T Consensus 9 l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~ 88 (460)
T PRK11776 9 LPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQV 88 (460)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999987665555899999999999999
Q ss_pred HHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.++++.+.... +.++..++|+.....+...+...++|+|+||+.+..++.++.....+++++|+||||++.+.++...+
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l 168 (460)
T PRK11776 89 AKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAI 168 (460)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHH
Confidence 99999886644 68899999999887777777788999999999999999998888889999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
..++..+++..|++++|||+++....+...++..+..+...... ....+.+.++...... +.+.+..++.....+++|
T Consensus 169 ~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~l 246 (460)
T PRK11776 169 DAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHHQPESCV 246 (460)
T ss_pred HHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999889999999988877765544 3445677777666544 788888888887778999
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
|||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|
T Consensus 247 VF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~y 326 (460)
T PRK11776 247 VFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVH 326 (460)
T ss_pred EEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 320 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
.||+||+||.|+.|.+++++.+.+...+..+.++++..++
T Consensus 327 iqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 327 VHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLN 366 (460)
T ss_pred hhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999998887654
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.3e-60 Score=431.51 Aligned_cols=367 Identities=33% Similarity=0.521 Sum_probs=324.0
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-----CCCccEEEEcCCHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAPTRE 75 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~liv~P~~~ 75 (369)
++||+++.++|.++||.+|+++|.++++.++.|+++++++|||||||++++++++..+... ..++.+||++|+++
T Consensus 135 ~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 135 TSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 4799999999999999999999999999999999999999999999999999888765432 23457999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
|+.|+.+.+.++....++++....++.....+...+...++|+|+||+.|..++.+....+.+++++|+||||++.+.++
T Consensus 215 La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf 294 (545)
T PTZ00110 215 LAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGF 294 (545)
T ss_pred HHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcch
Confidence 99999999999988888899899998887776666777899999999999999998888888999999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcC-CCEEEEecCcc-ccccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN-KPVRILVKRDE-LTLEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
...+..++..+++..|++++|||++.....+...++. .++.+...... .....+.+.+..... ..+...+..++...
T Consensus 295 ~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 295 EPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRGKLKMLLQRI 373 (545)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHHHHHHHHHHh
Confidence 9999999999999999999999999888888887775 46655544332 223344554444433 34566666666554
Q ss_pred --cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec
Q 017573 234 --AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 311 (369)
Q Consensus 234 --~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 311 (369)
...++||||++++.++.+++.|...++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhc
Q 017573 312 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 312 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
.|.+..+|.||+||+||.|+.|.+++|+++.+...+..+.+.++...+++|++|.++
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-61 Score=390.23 Aligned_cols=359 Identities=35% Similarity=0.552 Sum_probs=340.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
||+.|.+..+++..++..|+++|+++++.++.|++++..|.||||||.++++++++++...+..+.++|++|+++|+.|.
T Consensus 66 Lgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI 145 (476)
T KOG0330|consen 66 LGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQI 145 (476)
T ss_pred cCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998888778999999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHH-cCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~-~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+.+..++...|+++..+.|+.....+...+.++++|+|+||..|..++. -+.+++..++++|+|||+++.+..|...+
T Consensus 146 ~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~l 225 (476)
T KOG0330|consen 146 AEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEEL 225 (476)
T ss_pred HHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHH
Confidence 99999999999999999999999888888888899999999999999998 67788888999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
..++..+|...|.+++|||++.....+....+..|..+.+.......+.+.+.|..++. .++...+..+++...+..+|
T Consensus 226 d~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~i 304 (476)
T KOG0330|consen 226 DYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLVYLLNELAGNSVI 304 (476)
T ss_pred HHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHHHHHHhhcCCcEE
Confidence 99999999999999999999999999998889999999988888888888898888876 44677788888888889999
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
|||++...+..++-.|+..|+.+..+||+|+.+.|...+++|++|..+||+||++.++|+|+|.+++||.||.|.+..+|
T Consensus 305 VF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDY 384 (476)
T KOG0330|consen 305 VFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDY 384 (476)
T ss_pred EEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEeccccHHHHHHHHHHhcccccc
Q 017573 320 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 360 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (369)
++|+||++|.|..|.++.+++..|.+.++.|+-..+....+
T Consensus 385 IHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 385 IHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred HHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999887755
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-60 Score=410.95 Aligned_cols=367 Identities=37% Similarity=0.597 Sum_probs=338.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc------cCCCccEEEEcCCH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQALVLAPTR 74 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~------~~~~~~~liv~P~~ 74 (369)
++|++.+.++|...||..|+|+|.+.|+.++.|++++..|.||||||++++++++.++.. ...++.+|+++||+
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 589999999999999999999999999999999999999999999999999999998876 34456899999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC
Q 017573 75 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 154 (369)
Q Consensus 75 ~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~ 154 (369)
+|+.|..+.+.++...++++..+++|+.+...+.+.+.++.+|+|+||..+..+++....+++++.++|+||+|+|.+.+
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhC-CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc--cccccceeEEEEEccchhhhHHHHHHHHH
Q 017573 155 FKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFYVNVEKEEWKLETLCDLYE 231 (369)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (369)
|...+..++..+ ++..|.+..|||.+.....+...++..+..+..... ......+.++...+. ...+...+..++.
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLE 334 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHH
Confidence 999999999999 555589999999999999999999999888876543 345566777776666 4556777777776
Q ss_pred hc---cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEE
Q 017573 232 TL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308 (369)
Q Consensus 232 ~~---~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 308 (369)
.. ..+|+||||++++.|..+...++..++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|++++||
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 55 456999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhc
Q 017573 309 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 309 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
.+++|.+..+|+||+||+||.|+.|.+++|++..+......+.+.++...+.+++.+.++
T Consensus 415 nydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 415 NYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred eCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887543
No 7
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.9e-59 Score=417.56 Aligned_cols=369 Identities=73% Similarity=1.133 Sum_probs=333.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+||++.+.+++.++||..|+|+|.++++.+.+++++++++|||+|||++++++++..+.....++++||++|+++|+.|+
T Consensus 33 l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~ 112 (401)
T PTZ00424 33 LKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQI 112 (401)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998876555556899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
.+.+..+....+..+..+.|+.....+.......++|+|+||+.+...+........+++++|+||+|++.+.++...+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~ 192 (401)
T PTZ00424 113 QKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIY 192 (401)
T ss_pred HHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHH
Confidence 99999988777788888888877666655566678999999999999988887888889999999999999888888889
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEE
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv 240 (369)
.++..+++..|++++|||++.........+...+..+...........+..++........+...+..++......++||
T Consensus 193 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 272 (401)
T PTZ00424 193 DVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAII 272 (401)
T ss_pred HHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999888888888888887776666666666777777777766667777888887777789999
Q ss_pred EeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchh
Q 017573 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 320 (369)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~ 320 (369)
||++++.++.+++.|...+..+..+||+++.++|..+++.|++|+++|||+|+++++|+|+|++++||+++.|.+..+|.
T Consensus 273 F~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~ 352 (401)
T PTZ00424 273 YCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYI 352 (401)
T ss_pred EecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhcC
Q 017573 321 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369 (369)
Q Consensus 321 Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
||+||+||.|+.|.+++++++.+.+.++.+++.+..++++.+....+.|
T Consensus 353 qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 401 (401)
T PTZ00424 353 HRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADYL 401 (401)
T ss_pred ecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhcC
Confidence 9999999999999999999999999999999999999999888876654
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-59 Score=421.30 Aligned_cols=358 Identities=36% Similarity=0.604 Sum_probs=322.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC------CCccEEEEcCCH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL------VQCQALVLAPTR 74 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~------~~~~~liv~P~~ 74 (369)
|||++.+.+.|.++||..|+++|+++++.+++++++++++|||+|||+++++++++.+.... ...++||++|++
T Consensus 6 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptr 85 (456)
T PRK10590 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (456)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcH
Confidence 68999999999999999999999999999999999999999999999999999998875432 123799999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC
Q 017573 75 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 154 (369)
Q Consensus 75 ~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~ 154 (369)
+|+.|+.+.+.++....++.+..+.++.....+...+...++|+|+||+.|..++......++.++++|+||+|++.+.+
T Consensus 86 eLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~ 165 (456)
T PRK10590 86 ELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG 165 (456)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc
Confidence 99999999999998888899999999888777666667788999999999999998888888999999999999999999
Q ss_pred cHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhcc
Q 017573 155 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 234 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (369)
+...+..++..++...|++++|||++.+...+...++.++..+...........+.+.+..... ..+...+..++....
T Consensus 166 ~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~~~~~ 244 (456)
T PRK10590 166 FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMIGKGN 244 (456)
T ss_pred cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHHHcCC
Confidence 9999999999999999999999999988888888888888877766555555566666655543 345666777777666
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 314 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 314 (369)
..++||||++++.++.+++.|...+..+..+||+++.++|.++++.|++|+++|||||+++++|+|+|++++||++++|.
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~ 324 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN 324 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 315 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
+..+|.||+||+||.|..|.+++++...+...++.+++.++.++.
T Consensus 325 ~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 325 VPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred CHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999888774
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.5e-59 Score=417.76 Aligned_cols=359 Identities=33% Similarity=0.541 Sum_probs=326.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc----CCCccEEEEcCCHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVQCQALVLAPTREL 76 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~----~~~~~~liv~P~~~l 76 (369)
|+|++.+.+.|.++||.+|+++|+++++.+.+++++++++|||+|||+++++++++.+... ...+++||++|+++|
T Consensus 6 l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eL 85 (434)
T PRK11192 6 LELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTREL 85 (434)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHH
Confidence 6899999999999999999999999999999999999999999999999999999877432 123489999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH
Q 017573 77 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 77 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
+.|+.+.+..+....++++..+.|+.........+...++|+|+||+.|.+.+....+....++++|+||||++.+.++.
T Consensus 86 a~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~ 165 (434)
T PRK11192 86 AMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFA 165 (434)
T ss_pred HHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcH
Confidence 99999999999888899999999998887777777778899999999999999988888888999999999999999999
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCCh-hHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccC
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 235 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (369)
..+..+...++...|++++|||++. ....+...++..+..+...........+.+.+........+.+.+..++.....
T Consensus 166 ~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~ 245 (434)
T PRK11192 166 QDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEV 245 (434)
T ss_pred HHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 9999999999888999999999975 466777778888888777666666667777777777667788888888887677
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 315 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~ 315 (369)
.++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s 325 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRS 325 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 316 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 316 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
...|.||+||+||.|+.|.++++++..|...+..+++++...+.
T Consensus 326 ~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 326 ADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred HHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999998887664
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.5e-59 Score=428.77 Aligned_cols=361 Identities=39% Similarity=0.615 Sum_probs=328.7
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|+|++.+.++|+++||.+|+|+|.++++.+.++++++++||||+|||.++.+++++.+......+++||++|+++|+.|+
T Consensus 11 l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQV 90 (629)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998887665556899999999999999
Q ss_pred HHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+.+.++.... ++.+..++++.....+...+...++|+|+||+.+..++.+..+.+++++++|+||+|.+.+.++...+
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di 170 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV 170 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHH
Confidence 99999887654 78899999998877777777778999999999999999998888899999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
..++..++...|++++|||++.....+...++..+..+...........+.+.+..... ..+...+..++......++|
T Consensus 171 ~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~~~~~~I 249 (629)
T PRK11634 171 ETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAEDFDAAI 249 (629)
T ss_pred HHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999999988888899999988887776666666666666665543 34677788888777778999
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
|||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+...|
T Consensus 250 VF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~y 329 (629)
T PRK11634 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESY 329 (629)
T ss_pred EEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 320 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
.|++||+||.|+.|.+++++++.+...++.+++.++..+.+++
T Consensus 330 vqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 330 VHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred HHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999999999999888876654
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-58 Score=421.74 Aligned_cols=365 Identities=33% Similarity=0.542 Sum_probs=322.4
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-------cCCCccEEEEcCC
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-------GLVQCQALVLAPT 73 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-------~~~~~~~liv~P~ 73 (369)
+|||+.+.++|...||..|+|+|.++++.++.|+++++.+|||||||++++++++.++.. ...++.+||++|+
T Consensus 126 ~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PT 205 (518)
T PLN00206 126 CGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205 (518)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCC
Confidence 589999999999999999999999999999999999999999999999999999877532 1234589999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhcc
Q 017573 74 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 153 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~ 153 (369)
++|+.|+.+.++.+....++.+..+.++.....+...+..+++|+|+||+.|..++.+.....++++++|+||+|.+.+.
T Consensus 206 reLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~ 285 (518)
T PLN00206 206 RELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLER 285 (518)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhc
Confidence 99999999999998888888888888888776666666778899999999999999988888899999999999999999
Q ss_pred CcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 154 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
++...+..++..++ ..|++++|||++.....+...+...+..+...........+.+........ .+...+.+++...
T Consensus 286 gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~-~k~~~l~~~l~~~ 363 (518)
T PLN00206 286 GFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK-QKKQKLFDILKSK 363 (518)
T ss_pred chHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch-hHHHHHHHHHHhh
Confidence 99999988888875 679999999999988888888888888777766555555566666555443 3445566666543
Q ss_pred c--CCCeEEEeCCHhhHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEe
Q 017573 234 A--ITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 310 (369)
Q Consensus 234 ~--~~k~lv~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 310 (369)
. ..++||||+++..++.+++.|.. .+..+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 364 ~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~ 443 (518)
T PLN00206 364 QHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIF 443 (518)
T ss_pred cccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEe
Confidence 2 35899999999999999999975 58899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 311 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 311 ~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
++|.+..+|.||+||+||.|+.|.+++|+++.+...+..+.+.++....++|++|.+
T Consensus 444 d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 444 DMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred CCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999999999999999998865
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-58 Score=422.36 Aligned_cols=358 Identities=33% Similarity=0.523 Sum_probs=319.6
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC-------CCccEEEEcCC
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-------VQCQALVLAPT 73 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~-------~~~~~liv~P~ 73 (369)
|+|++.+.++|.++||..|+++|.++++.+++++++++++|||+|||+++++++++.+.... ..+++||++|+
T Consensus 14 l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PT 93 (572)
T PRK04537 14 FDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPT 93 (572)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCc
Confidence 58999999999999999999999999999999999999999999999999999998774321 23589999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEechhHhhc
Q 017573 74 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLS 152 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~ 152 (369)
++|+.|+.+.+.++....++++..++|+.....+...+...++|+|+||+.|..++.+. .+.+..++++|+||+|++.+
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld 173 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD 173 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhh
Confidence 99999999999999988899999999999887777777778899999999999988765 35677789999999999999
Q ss_pred cCcHHHHHHHHhhCCc--cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH
Q 017573 153 RGFKDQIYDIFQLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 230 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (369)
.++...+..++..++. ..|++++|||++.....+...++..+..+...........+.+.+.... ...+...+..++
T Consensus 174 ~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~k~~~L~~ll 252 (572)
T PRK04537 174 LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA-DEEKQTLLLGLL 252 (572)
T ss_pred cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-HHHHHHHHHHHH
Confidence 9999999999998886 6789999999998888888888888877666555555555555555443 345677777787
Q ss_pred HhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEe
Q 017573 231 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 310 (369)
Q Consensus 231 ~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 310 (369)
......++||||++++.++.+++.|...+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 253 ~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIny 332 (572)
T PRK04537 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNY 332 (572)
T ss_pred hcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEc
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 311 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 311 ~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
+.|.+..+|.||+||+||.|+.|.+++|+.+.+...+..+++++...+.
T Consensus 333 d~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 333 DLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999998887664
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-58 Score=415.70 Aligned_cols=359 Identities=46% Similarity=0.720 Sum_probs=334.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCcc-EEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQ-ALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~-~liv~P~~~l~~ 78 (369)
++|++.+.+++.+.||..|+|+|.++++.++.|++++..|+||||||.++++++++.+.. ...... +||++||++|+.
T Consensus 34 l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~ 113 (513)
T COG0513 34 LGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAV 113 (513)
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999774 222212 999999999999
Q ss_pred HHHHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHH
Q 017573 79 QIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKD 157 (369)
Q Consensus 79 q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~ 157 (369)
|..+.+.++.... ++.+..++|+.....+...+..+++|+|+||..+.+++.+..+.++.+.++|+||++++.+.+|..
T Consensus 114 Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~ 193 (513)
T COG0513 114 QIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFID 193 (513)
T ss_pred HHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHH
Confidence 9999999999888 799999999998888877777779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccc--cccceeEEEEEccchhhhHHHHHHHHHhccC
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFYVNVEKEEWKLETLCDLYETLAI 235 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (369)
.+..+...++...|++++|||++.....+...++.+|..+....... ....+.+.++.+.....+...+..++.....
T Consensus 194 ~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~ 273 (513)
T COG0513 194 DIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDE 273 (513)
T ss_pred HHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998887775555 7889999999998876799999999998888
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 315 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~ 315 (369)
.++||||++.+.++.++..|...|+++..+||++++++|.+.++.|++|+.+|||||+++++|+|+|++++||.++.|.+
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~ 353 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLD 353 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHhccccc
Q 017573 316 PENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIE 359 (369)
Q Consensus 316 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 359 (369)
...|+||+||+||.|..|.++.|+.+. +...+..+++.+.....
T Consensus 354 ~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 354 PEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred HHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999986 89999999998866633
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.7e-57 Score=409.62 Aligned_cols=358 Identities=33% Similarity=0.526 Sum_probs=317.1
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC-------CccEEEEcCC
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV-------QCQALVLAPT 73 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~-------~~~~liv~P~ 73 (369)
++|++.+.++|.++||.+|+++|.++++.+.+|+++++.+|||||||+++++++++.+..... .+++||++|+
T Consensus 92 ~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Pt 171 (475)
T PRK01297 92 FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPT 171 (475)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCc
Confidence 589999999999999999999999999999999999999999999999999999988765421 3489999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH-ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc
Q 017573 74 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 152 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 152 (369)
++|+.|+.+.+..+....++.+..+.|+.......+.+ ...++|+|+||++|..+...+...+++++++|+||+|.+.+
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~ 251 (475)
T PRK01297 172 RELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD 251 (475)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHh
Confidence 99999999999999888889999888887655544433 45689999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHhhCCc--cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH
Q 017573 153 RGFKDQIYDIFQLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 230 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (369)
.++...+..++..++. ..|++++|||.+.+.......+...+..+...........+.+.+..... ..+...+..++
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll 330 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDKYKLLYNLV 330 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhHHHHHHHHH
Confidence 9988889899888864 56899999999988888888998888877666555555555555554433 34667777777
Q ss_pred HhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEe
Q 017573 231 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 310 (369)
Q Consensus 231 ~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 310 (369)
......++||||++++.++.+++.|.+.+..+..+||+++.++|.++++.|++|++++||+|+++++|+|+|++++||++
T Consensus 331 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~ 410 (475)
T PRK01297 331 TQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINF 410 (475)
T ss_pred HhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 311 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 311 ~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
+.|.+..+|.||+||+||.|++|.+++|+++.|...+..++++++..+.
T Consensus 411 ~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 411 TLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999988763
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.7e-55 Score=369.76 Aligned_cols=365 Identities=35% Similarity=0.558 Sum_probs=336.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC---------CCccEEEEcC
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---------VQCQALVLAP 72 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~---------~~~~~liv~P 72 (369)
|||.++++.+...||..|+|+|+.+++..++.+++|-.|.||||||.+++++++..+...+ .++.++++.|
T Consensus 251 ~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilap 330 (673)
T KOG0333|consen 251 GFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAP 330 (673)
T ss_pred CCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeech
Confidence 7999999999999999999999999999999999999999999999999888887663322 3458999999
Q ss_pred CHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc
Q 017573 73 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 152 (369)
Q Consensus 73 ~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 152 (369)
+++|++|..++-.+|...+++++..+.|+...+++.-.+...|+|+|+||..|...+.+.++.++.+.++|+||++++.+
T Consensus 331 tReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 331 TRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred HHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc
Confidence 99999999999999999999999999999998888777888999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhCCcc-------------------------CcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcccccc
Q 017573 153 RGFKDQIYDIFQLLPAK-------------------------VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE 207 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-------------------------~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (369)
.+|...+..++..+|.. .|.+.+|||+++....++..++..|+.+.........+
T Consensus 411 mgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~ 490 (673)
T KOG0333|consen 411 MGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTP 490 (673)
T ss_pred ccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCcc
Confidence 99999999999988642 57889999999999999999999999999988888888
Q ss_pred ceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 017573 208 GIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 287 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 287 (369)
.+.+.+......+ +...|.+++......++|||+|..+.++.+++.|.+.++++..+||+-++++|+.+++.|++|..+
T Consensus 491 rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d 569 (673)
T KOG0333|consen 491 RVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD 569 (673)
T ss_pred chheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC
Confidence 8999988887755 588899999888778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhcc-ccccCCcchh
Q 017573 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV-VIEELPSNVA 366 (369)
Q Consensus 288 vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 366 (369)
|||||+++++|+|+|++++||.++.+++..+|.+||||+||.|+.|.++.|+++.|...++.+.+.+.. .....|+++.
T Consensus 570 IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 570 ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 999999999999999999999999999999999999999999999999999999999999888887764 4445666654
Q ss_pred h
Q 017573 367 D 367 (369)
Q Consensus 367 ~ 367 (369)
+
T Consensus 650 ~ 650 (673)
T KOG0333|consen 650 N 650 (673)
T ss_pred c
Confidence 3
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-54 Score=362.13 Aligned_cols=344 Identities=33% Similarity=0.548 Sum_probs=308.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc--CCC---ccEEEEcCCHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVQ---CQALVLAPTRE 75 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~--~~~---~~~liv~P~~~ 75 (369)
++|++++..++..+||..++|.|..+++.++.++++.+.++||||||+++++++++.+... ... -.++||+||++
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRE 90 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRE 90 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHH
Confidence 3678999999999999999999999999999999999999999999999999999998322 111 14899999999
Q ss_pred HHHHHHHHHHHhccc-cCcEEEEEECCcchHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCC--CccEEEEechhHhh
Q 017573 76 LAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPD--YIKMFVLDEADEML 151 (369)
Q Consensus 76 l~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~--~~~~viiDE~H~~~ 151 (369)
|+.|..+....|... .++++..+.|+.+..++...+. ..++|+|+||..|.+++.+....++ .+.++|+|||+++.
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHh
Confidence 999999998888776 5788999999988777665554 5678999999999999988554444 78999999999999
Q ss_pred ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccc--cccceeEEEEEccchhhhHHHHHHH
Q 017573 152 SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFYVNVEKEEWKLETLCDL 229 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (369)
+.+|...++.+++.+|+..+.-++|||......++....+.+|+.+.+..... .+..+...|..+.+ ..+...+.++
T Consensus 171 dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-~eK~~~lv~~ 249 (567)
T KOG0345|consen 171 DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-DEKLSQLVHL 249 (567)
T ss_pred cccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877665 67778888877766 4588888888
Q ss_pred HHhccCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEE
Q 017573 230 YETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 307 (369)
Q Consensus 230 ~~~~~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 307 (369)
+.....+|+|||+++...++.+...|... +..+..+||.+++..|.+++..|.+....+|+||+++.+|+|+|++++|
T Consensus 250 L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~V 329 (567)
T KOG0345|consen 250 LNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLV 329 (567)
T ss_pred HhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEE
Confidence 88888899999999999999999998766 6689999999999999999999999778899999999999999999999
Q ss_pred EEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 308 INYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 308 i~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+.+|+|.++..|.+|+||++|.|+.|.+++|..+.+..
T Consensus 330 vQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 330 VQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred EecCCCCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 99999999999999999999999999999999995544
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-55 Score=369.55 Aligned_cols=353 Identities=35% Similarity=0.564 Sum_probs=327.4
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCC---ccEEEEcCCHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ---CQALVLAPTRELA 77 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~liv~P~~~l~ 77 (369)
|+|+.-+.+++..+||..|+|+|...++-.+-|++++-+|.||||||.++++++++++...+.+ .++||+||+++|+
T Consensus 186 mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 186 MNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred cccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 7899999999999999999999999999999999999999999999999999999998665443 3799999999999
Q ss_pred HHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhccCcH
Q 017573 78 QQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 78 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
.|.....+++...+.+.+....||.....+...+...+||+|+||..|..++.+ ..+++.++.++|+||+++++..+|.
T Consensus 266 iQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFa 345 (691)
T KOG0338|consen 266 IQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFA 345 (691)
T ss_pred HHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHH
Confidence 999999999998889999999999999888888888999999999999988875 5677888999999999999999999
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEcc--chhhhHHHHHHHHHhcc
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVE--KEEWKLETLCDLYETLA 234 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 234 (369)
..++.++..++++.|.+++|||+.....+++...+.+|+.+.+.........+.+-|+.+. .....-..+..++.+.-
T Consensus 346 demnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf 425 (691)
T KOG0338|consen 346 DEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTF 425 (691)
T ss_pred HHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988888888887777665 34456667777777766
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 314 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 314 (369)
..+++||+.+.+.|+.+.=.|--.|.++.-+||.+++.+|.+.++.|++++++|||||+.+++|+||+++..||.+..|.
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch
Confidence 78999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHH
Q 017573 315 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 353 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (369)
+...|++|+||..|.|+.|.+++++..+|.+.++.+...
T Consensus 506 t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 506 TIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999887665
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-55 Score=347.96 Aligned_cols=364 Identities=40% Similarity=0.675 Sum_probs=341.3
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 81 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 81 (369)
.|.+++.......||+.|+|+|+++++..+.|++++..|..|+|||-++++++++.+......-++++++|+++|+-|..
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtS 170 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTS 170 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHH
Confidence 57788899999999999999999999999999999999999999999999999999988777778999999999999999
Q ss_pred HHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHH
Q 017573 82 KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYD 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~ 161 (369)
..+.++.+.+++.+....|++...++.-.+....+++|+||.+.+.+...+-...+.+.++|+|||+.+.+..|...+..
T Consensus 171 qvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~ 250 (459)
T KOG0326|consen 171 QVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEK 250 (459)
T ss_pred HHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHH
Confidence 99999999999999999999987776655667889999999999999999988899999999999999999999999999
Q ss_pred HHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEE
Q 017573 162 IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 241 (369)
Q Consensus 162 ~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~ 241 (369)
++..+|+..|+++.|||.+-....++.+.+.+|..+.... +..+..+.++|..+.. ..+..-+..++.+......+||
T Consensus 251 li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e-~qKvhCLntLfskLqINQsIIF 328 (459)
T KOG0326|consen 251 LISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEE-RQKVHCLNTLFSKLQINQSIIF 328 (459)
T ss_pred HHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeech-hhhhhhHHHHHHHhcccceEEE
Confidence 9999999999999999999999999999999998887644 4566778888877765 4588889999999998999999
Q ss_pred eCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhh
Q 017573 242 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321 (369)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q 321 (369)
|||.+.++-+++.+.+.|+.+..+|+.|.++.|.+++..|++|.++.||||+.+.+|+|++.+++||.++.|+++.+|.+
T Consensus 329 CNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLH 408 (459)
T KOG0326|consen 329 CNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 408 (459)
T ss_pred eccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 322 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 322 ~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
|+||.||.|..|.++-+++..|...+..+++.++.+++++|..+..
T Consensus 409 RIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 409 RIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred HccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 9999999999999999999999999999999999999999988754
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-53 Score=339.23 Aligned_cols=361 Identities=37% Similarity=0.513 Sum_probs=321.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+||++|+...|.++++..|+|+|...++.+++|++++=+|-||||||.++.+++++++...+.+--+++++|+++|+-|.
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~Qi 91 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQI 91 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC----CCCCCccEEEEechhHhhccCcH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS----LRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~----~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
.++|....+..++++.++.|+...-.+...+..++|++++||+++..++..+. +-+.++.++++|||+.+.+..|.
T Consensus 92 aEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~ 171 (442)
T KOG0340|consen 92 AEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFP 171 (442)
T ss_pred HHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchh
Confidence 99999999999999999999998877777788889999999999998887753 23456789999999999999999
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCC--CEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc-
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK--PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL- 233 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 233 (369)
..+..+.+.+|...|.+++|||.......+...-..+ ...+...........+.+-|+.++... +..-+..++...
T Consensus 172 d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv~~Lr~~~ 250 (442)
T KOG0340|consen 172 DILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYLVHLLRDFE 250 (442)
T ss_pred hHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHHHHHHhhhh
Confidence 9999999999999999999999987776655544444 334444556666677777777766533 333344444333
Q ss_pred --cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec
Q 017573 234 --AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 311 (369)
Q Consensus 234 --~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 311 (369)
..+.++||+++..+++.++..|+..++.+..+|+.|++.+|-..+..|+++..++||||+.+++|+|+|.+..|+.++
T Consensus 251 ~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 251 NKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred hccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecC
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 312 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 312 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
.|.++.+|++|+||..|.|+.|.++.++++.|.+.+..+++..+..+.+.+
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999988877655
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-52 Score=358.28 Aligned_cols=365 Identities=35% Similarity=0.515 Sum_probs=329.6
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC----------CccEEEEc
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV----------QCQALVLA 71 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~----------~~~~liv~ 71 (369)
.+++.+..++...++..|+|+|+.+++.+..|++.+++|+||+|||.+++++++.++..... .+.++|++
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred chhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEe
Confidence 36677888899999999999999999999999999999999999999999999998865422 35899999
Q ss_pred CCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 72 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 72 P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
||++|+.|.+++.+++....+++....+++.....+..-..++++|+|+||.+|..++..+.+.+..++++|+||++++.
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335|consen 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRML 239 (482)
T ss_pred CcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhh
Confidence 99999999999999999888999999999988777777788899999999999999999999999999999999999999
Q ss_pred c-cCcHHHHHHHHhhCCc----cCcEEEEEeeCChhHHHHHHHhcCC-CEEEEecCccccccceeEEEEEccchhhhHHH
Q 017573 152 S-RGFKDQIYDIFQLLPA----KVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEEWKLET 225 (369)
Q Consensus 152 ~-~~~~~~~~~~~~~~~~----~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
+ .+|...+..+...... ..|.+++|||.+.++..+...++.. .+.+.+.........+.+....+.... +...
T Consensus 240 D~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~-kr~~ 318 (482)
T KOG0335|consen 240 DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME-KRSK 318 (482)
T ss_pred hhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh-hHHH
Confidence 8 8899999999877743 6889999999999988877777776 666777777777888888888887655 4444
Q ss_pred HHHHHH-hc---cCC-----CeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCc
Q 017573 226 LCDLYE-TL---AIT-----QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296 (369)
Q Consensus 226 l~~~~~-~~---~~~-----k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 296 (369)
+.+++. .. ..+ +++|||.+++.+..+...|...+++...+||+.++.+|.+.++.|++|...++|||.++.
T Consensus 319 Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa 398 (482)
T KOG0335|consen 319 LLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA 398 (482)
T ss_pred HHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh
Confidence 444443 32 223 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 297 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 297 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
+|+|+|++++||.++.|.+..+|++|+||+||.|+.|.+..|++..+....+.+.+.+....+++|.|+.+
T Consensus 399 RGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 399 RGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred cCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3e-52 Score=349.93 Aligned_cols=349 Identities=32% Similarity=0.501 Sum_probs=313.4
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC----CccEEEEcCCHHHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV----QCQALVLAPTRELA 77 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~----~~~~liv~P~~~l~ 77 (369)
.|++.+.++++.+||..+++.|+..++.++.|++++..|-||+|||+++++++++.+.+.+. +..++|+|||++|+
T Consensus 88 ~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA 167 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELA 167 (543)
T ss_pred ccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHH
Confidence 68999999999999999999999999999999999999999999999999999998865432 33699999999999
Q ss_pred HHHHHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCC-CCCccEEEEechhHhhccCc
Q 017573 78 QQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR-PDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 78 ~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~-~~~~~~viiDE~H~~~~~~~ 155 (369)
.|.+.+.+++.... +..+..+.|+.......+.+..+++|+|+||.+|..++.+.... ....+++|+|||+++.+.+|
T Consensus 168 ~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF 247 (543)
T KOG0342|consen 168 MQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGF 247 (543)
T ss_pred HHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhccc
Confidence 99999999998877 88999999999887777777779999999999999999886544 34467999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCC-CEEEEecC--ccccccceeEEEEEccchhhhHHHHHHHHHh
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKR--DELTLEGIKQFYVNVEKEEWKLETLCDLYET 232 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (369)
.+.+..+...+|...|..++|||.++...++....+.. +..+.+.. ...+...+.+.++..+... ..-.+..++++
T Consensus 248 ~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f~ll~~~LKk 326 (543)
T KOG0342|consen 248 EEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RFSLLYTFLKK 326 (543)
T ss_pred HHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hHHHHHHHHHH
Confidence 99999999999999999999999999998888877776 55555433 4455667888777666544 37777888877
Q ss_pred ccC-CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec
Q 017573 233 LAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 311 (369)
Q Consensus 233 ~~~-~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 311 (369)
+.. .|++|||++......+++.|.....++..+||+.++..|.....+|++.+..||+||++..+|+|+|++++|+.++
T Consensus 327 ~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~ 406 (543)
T KOG0342|consen 327 NIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYD 406 (543)
T ss_pred hcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeC
Confidence 765 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 017573 312 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 351 (369)
Q Consensus 312 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 351 (369)
+|.++.+|++|+||++|.|+.|.++++..+.+..++..+.
T Consensus 407 ~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 407 PPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999888776
No 22
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-52 Score=342.80 Aligned_cols=366 Identities=75% Similarity=1.122 Sum_probs=344.7
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|||++.+.+.+..+||+.|+.+|+.|+..+.+|.++.+++.+|+|||.++...+++.+........+++++|+++|+.|.
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi 110 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQI 110 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987666666899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHH-HHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+....+....+..+..+.|+.....+ ..+....++|+++||.....++....+....+.++++||++++...++.+.+
T Consensus 111 ~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI 190 (397)
T KOG0327|consen 111 QKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQI 190 (397)
T ss_pred HHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHH
Confidence 999999988889999988988877644 3444556899999999999999998888888999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
..+++.+|++.|++++|||.+.+.......++..|+.+.+..+......+.+++....... ++..+..+.. .-...+
T Consensus 191 ~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~--~~~q~~ 267 (397)
T KOG0327|consen 191 YDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR--RVTQAV 267 (397)
T ss_pred HHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH--hhhcce
Confidence 9999999999999999999999999999999999999999999999999999999888766 8888988888 456889
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
+|||+.+.+..+...|...+..+..+|+++.+.+|..++..|++|..+|||.|+.+++|+|+..++.|+.++.|.....|
T Consensus 268 if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~y 347 (397)
T KOG0327|consen 268 IFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENY 347 (397)
T ss_pred EEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhcC
Q 017573 320 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
.+|+||+||.|.+|.++.++...|...++.++++|..+++++|.+..+++
T Consensus 348 ihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 348 IHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 99999999999999999999999999999999999999999999998875
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-52 Score=342.42 Aligned_cols=364 Identities=32% Similarity=0.517 Sum_probs=328.3
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc------cCCCccEEEEcCCHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQALVLAPTRE 75 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~------~~~~~~~liv~P~~~ 75 (369)
...+++..++.+.||+.|+|+|.++++-+++|.+++-.|.||+|||++++++.+-++.. ...++.+|+++|+++
T Consensus 226 q~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptre 305 (629)
T KOG0336|consen 226 QCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRE 305 (629)
T ss_pred hhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHH
Confidence 45688999999999999999999999999999999999999999999999877665532 234557999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
|+.|..-+..++. ..++....++|+.+-.++...+.++++|+++||.+|..+...+.+++..+.++|+||++++++.+|
T Consensus 306 Lalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgF 384 (629)
T KOG0336|consen 306 LALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGF 384 (629)
T ss_pred HHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccc
Confidence 9999988887764 347788888888887788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcccccc-ceeEEEEEccchhhhHHHHHHHHHhc-
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE-GIKQFYVNVEKEEWKLETLCDLYETL- 233 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~- 233 (369)
..++.+++-.+.+..|.+..|||.++....+...+++.|..+.+..-..... .+.+.+ .+.....+...+..++...
T Consensus 385 EpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms 463 (629)
T KOG0336|consen 385 EPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMS 463 (629)
T ss_pred cHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998887765544433 344444 5566667888888888776
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 313 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 313 (369)
+..|+||||.+...|..+...|.-.|+....+||+-++.+|+..++.|++|+.++||+|+.+++|+|+|+++||+.++.|
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP 543 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFP 543 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCC
Confidence 45799999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 314 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 314 ~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
.+..+|.+|+||.||.|+.|.++.++...|-.+...+.+.++...+++|++|..
T Consensus 544 ~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~ 597 (629)
T KOG0336|consen 544 RNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVR 597 (629)
T ss_pred ccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 999999999999999999999999999999999999999999999999998854
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.5e-51 Score=381.96 Aligned_cols=352 Identities=19% Similarity=0.244 Sum_probs=276.1
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 81 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 81 (369)
+|++.+.+.|++.||.+|+++|.++++.+.+|+++++.+|||||||+++++++++.+...+ +.++||++|+++|+.|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999886543 448999999999999999
Q ss_pred HHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc----CCCCCCCccEEEEechhHhhccCcHH
Q 017573 82 KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR----QSLRPDYIKMFVLDEADEMLSRGFKD 157 (369)
Q Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~----~~~~~~~~~~viiDE~H~~~~~~~~~ 157 (369)
+.++++. ..++++...+|+...... ..+...++|+++||+++...+.. +...+++++++|+||+|.+.+ .+..
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHH
Confidence 9999986 447788888887764443 44555689999999998743322 112356789999999999864 2343
Q ss_pred HH-------HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEcc-------------
Q 017573 158 QI-------YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVE------------- 217 (369)
Q Consensus 158 ~~-------~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 217 (369)
.+ ..+....+...|++++|||.+.. .+....++..+..... .+..........+....
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~-~~~~~~l~g~~~~~i~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADP-AAAASRLIGAPVVAVT-EDGSPRGARTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCH-HHHHHHHcCCCeEEEC-CCCCCcCceEEEEecCCccccccccccccc
Confidence 33 33334456678999999999755 4567777777755432 22222111211111111
Q ss_pred --chhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC--------CCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 017573 218 --KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSSR 287 (369)
Q Consensus 218 --~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 287 (369)
....+...+..++.. +.++||||++++.++.++..+++. +.++..+||++++++|.++++.|++|+.+
T Consensus 254 ~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 254 RSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred cchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 011244455555543 579999999999999999988753 56788999999999999999999999999
Q ss_pred EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEec--cccHHHHHHHHHHhccccccC
Q 017573 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT--RDDERMLFDIQKFYNVVIEEL 361 (369)
Q Consensus 288 vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 361 (369)
+||+|++++.|+|+|++++||+++.|.+..+|.||+||+||.|+.|.++++.. +.|...+...+++++...++.
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999886 446666777777877766543
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-50 Score=344.80 Aligned_cols=358 Identities=31% Similarity=0.472 Sum_probs=320.0
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC----CCccEEEEcCCHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTREL 76 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~l 76 (369)
|+|+.-+.+.|...+|..|+.+|++.++..++|++++=.|-||||||++++.++++++.... .+--+|||+||++|
T Consensus 74 lpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTREL 153 (758)
T KOG0343|consen 74 LPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTREL 153 (758)
T ss_pred CCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHH
Confidence 68999999999999999999999999999999999999999999999999999999885421 23359999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEechhHhhccCc
Q 017573 77 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 77 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
+.|.++.+.+.+...++....+.||.....+...+. +.+|+||||.+|++++... .+..+++.++|+|||+++.+.+|
T Consensus 154 A~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGF 232 (758)
T KOG0343|consen 154 ALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGF 232 (758)
T ss_pred HHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhH
Confidence 999999999999999999999999998776665554 4699999999999988764 45677799999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEec--CccccccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVK--RDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
...+..+++.+|+..|.+++|||...+..++++..+.+|..+.+. .....|..+.++|+.++- ..++..|-.++..+
T Consensus 233 k~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~~L~sFI~sh 311 (758)
T KOG0343|consen 233 KKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKIDMLWSFIKSH 311 (758)
T ss_pred HHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999989998777665 445678888898888766 45999999999999
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 311 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 311 (369)
...|+|||+++.+++..+++.|.+. |..+..+||.|++..|.++..+|.....-||+||+++++|+|+|.+++||.++
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~D 391 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVD 391 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEec
Confidence 9999999999999999999999877 77899999999999999999999998888999999999999999999999999
Q ss_pred CCCCccchhhhhcccccCCCceeEEEEecccc-HHHHHHHHHHhccccccC
Q 017573 312 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEEL 361 (369)
Q Consensus 312 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 361 (369)
.|-+..+|++|+||..|.+..|.++++..+.+ +.++..++... +.+.++
T Consensus 392 CPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i 441 (758)
T KOG0343|consen 392 CPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEI 441 (758)
T ss_pred CchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhh
Confidence 99999999999999999999999999999998 55555555443 444433
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-50 Score=335.51 Aligned_cols=356 Identities=31% Similarity=0.452 Sum_probs=311.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc------cCCCccEEEEcCCH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQALVLAPTR 74 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~------~~~~~~~liv~P~~ 74 (369)
|||++.+++++.+.|++.|+-+|+.+++.+++|++++..|.||||||.+|++++++.+.. +..++.++|++||+
T Consensus 24 ~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 24 FGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred hCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 699999999999999999999999999999999999999999999999999999988743 33445799999999
Q ss_pred HHHHHHHHHHHHhccccC--cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEechhHhh
Q 017573 75 ELAQQIEKVMRALGDYLG--VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDEADEML 151 (369)
Q Consensus 75 ~l~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~-~~~~~~~~viiDE~H~~~ 151 (369)
+|+.|.+..+.++...++ +++.-+..+.+.......+...++|+|+||..+..++..+. .....+.++|+||++.+.
T Consensus 104 EL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLll 183 (569)
T KOG0346|consen 104 ELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLL 183 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhh
Confidence 999999998888765554 33333333344445557778889999999999999998877 556678999999999999
Q ss_pred ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcccc-ccceeEEEEEccchhhhHHHHHHHH
Q 017573 152 SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFYVNVEKEEWKLETLCDLY 230 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (369)
.-+|.+.+..+.+.+|+..|.++||||...+...+...++.+|+.......+.. +..+.++++.+. +.++.-.+..++
T Consensus 184 sfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKflllyall 262 (569)
T KOG0346|consen 184 SFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLLLYALL 262 (569)
T ss_pred hcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877665554 567888888887 566777777666
Q ss_pred H-hccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec----------------
Q 017573 231 E-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD---------------- 293 (369)
Q Consensus 231 ~-~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~---------------- 293 (369)
+ +.-.+|.|||+|+++.+..+.-.|++.|++.++++|.++.+.|.-++++|+.|-++++|||+
T Consensus 263 KL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~ 342 (569)
T KOG0346|consen 263 KLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKS 342 (569)
T ss_pred HHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccc
Confidence 5 34558999999999999999999999999999999999999999999999999999999997
Q ss_pred -------------------CCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHh
Q 017573 294 -------------------LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 354 (369)
Q Consensus 294 -------------------~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (369)
...+|+|+..++.|+.++.|.+...|++|+||++|.+++|.++.|+.+.+......++...
T Consensus 343 ~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 343 DEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred cccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 2457999999999999999999999999999999999999999999999888777777766
Q ss_pred ccc
Q 017573 355 NVV 357 (369)
Q Consensus 355 ~~~ 357 (369)
...
T Consensus 423 ~d~ 425 (569)
T KOG0346|consen 423 KDE 425 (569)
T ss_pred hhH
Confidence 654
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-49 Score=332.55 Aligned_cols=368 Identities=32% Similarity=0.487 Sum_probs=339.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-----CCCccEEEEcCCHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAPTRE 75 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~liv~P~~~ 75 (369)
+|++++|..+..+..|.+|+|+|.++++-.+.+++++=.|-||||||.+++.+++-++... ..++-.+|+||+++
T Consensus 228 ~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTre 307 (731)
T KOG0339|consen 228 FGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRE 307 (731)
T ss_pred cCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHH
Confidence 4789999999999999999999999999999999999999999999998888777665321 34557999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
|+.|...++++|++..++++..++|+....++.+-+..++.|+|+||++|..++.-+..++.++.++|+||++++.+.+|
T Consensus 308 la~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGf 387 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGF 387 (731)
T ss_pred HHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcccc
Confidence 99999999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHH-HHHHHhcc
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-CDLYETLA 234 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 234 (369)
..++..|...+.+..|.+.+|||....++.+.+.++..|+.+....-......+.+.+..+.+...+..-+ .++.....
T Consensus 388 e~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S 467 (731)
T KOG0339|consen 388 EPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSS 467 (731)
T ss_pred HHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999998887766666777888877777766666544 44555567
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 314 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 314 (369)
.+++|+|+.-...+++++..|+-.++++..+||++++.+|.+.+.+|+.+...|+++|+...+|+|+|.+..|+.++...
T Consensus 468 ~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar 547 (731)
T KOG0339|consen 468 EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR 547 (731)
T ss_pred CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhc
Q 017573 315 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
+...+.||+||.||.|.+|.+++++++.|.+..-.+.+.+....+.+|.++.+|
T Consensus 548 dIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 548 DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred hhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=323.15 Aligned_cols=359 Identities=42% Similarity=0.693 Sum_probs=324.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
|+|.|++.+.+..++|..|+.+|..+++.++.. ++.|.++..|+|||.++.++++.++......+.++-++|+++|+.
T Consensus 95 L~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~ 174 (477)
T KOG0332|consen 95 LRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAP 174 (477)
T ss_pred hCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHH
Confidence 579999999999999999999999999999875 899999999999999999999999988877778898999999999
Q ss_pred HHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhc-cCcH
Q 017573 79 QIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFK 156 (369)
Q Consensus 79 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~-~~~~ 156 (369)
|..+.+.++++..+++..+...+.....-.. -..+|+++||..+..+... .-+..+.+.++++|||+.+.+ .++.
T Consensus 175 Q~~eVv~eMGKf~~ita~yair~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~ 251 (477)
T KOG0332|consen 175 QTGEVVEEMGKFTELTASYAIRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQ 251 (477)
T ss_pred HHHHHHHHhcCceeeeEEEEecCcccccCCc---chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccccc
Confidence 9999999999888888887776663222211 1358999999999998877 667778889999999999875 4578
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCC
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (369)
..-..+...+|+..|++++|||.......+..+...++..+....+......+.+++..+.....+.+.+.++......+
T Consensus 252 D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tig 331 (477)
T KOG0332|consen 252 DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIG 331 (477)
T ss_pred ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred CeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC--
Q 017573 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT-- 314 (369)
Q Consensus 237 k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~-- 314 (369)
..+|||.++..|.+++..+...|..+..+||++..++|..+++.|+.|..+|||+|+.+.+|+|++.++.||.+++|-
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~ 411 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY 411 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHhccccccCC
Q 017573 315 ----QPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 315 ----~~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 362 (369)
+..+|.+|+||+||.|++|.++-+++.. ....++.++++++..+.++.
T Consensus 412 ~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 412 TGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred CCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 5678999999999999999999888865 66677799999977766543
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-48 Score=353.09 Aligned_cols=325 Identities=21% Similarity=0.276 Sum_probs=252.3
Q ss_pred HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
+.|||..|||+|+++++.+++++++++.+|||+|||++++++++.. ++.++|++|+++|+.|+.+.+..+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 4589999999999999999999999999999999999999887742 227999999999999999988765
Q ss_pred CcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHH-HcCCC-CCCCccEEEEechhHhhccC--cHHHHH---
Q 017573 92 GVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDML-RRQSL-RPDYIKMFVLDEADEMLSRG--FKDQIY--- 160 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~-~~~~~-~~~~~~~viiDE~H~~~~~~--~~~~~~--- 160 (369)
++.+..+.++........ ...+..+|+++||+.+.... ....+ ...+++++|+||||.+.+++ +...+.
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 677777777766543322 23456899999999874321 00111 34568999999999998765 344333
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcC--CCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHH-hccCCC
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE-TLAITQ 237 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~k 237 (369)
.+...+ +..+++++|||+++.........+. .+..+.. ....+++..... .........+..++. ...+++
T Consensus 155 ~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~--~~~~~~~~~l~~~l~~~~~~~~ 228 (470)
T TIGR00614 155 SLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR--RKTPKILEDLLRFIRKEFKGKS 228 (470)
T ss_pred HHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE--eCCccHHHHHHHHHHHhcCCCc
Confidence 334444 4677999999999876655544432 3333222 112222222211 111134455556555 445567
Q ss_pred eEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCcc
Q 017573 238 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 317 (369)
Q Consensus 238 ~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~ 317 (369)
+||||+++++++.+++.|++.+..+..+||+++.++|.++++.|.+|+++|||||+++++|+|+|++++||++++|.+..
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccCCCceeEEEEeccccHHHHHHHHH
Q 017573 318 NYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 352 (369)
Q Consensus 318 ~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 352 (369)
.|.|++||+||.|++|.+++++++.|...++.+..
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999988877666544
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-47 Score=358.34 Aligned_cols=336 Identities=21% Similarity=0.262 Sum_probs=258.8
Q ss_pred CCHHHHHHHH-hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH
Q 017573 3 LQENLLRGIY-AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 81 (369)
Q Consensus 3 l~~~i~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 81 (369)
....+...++ .||+..+||.|+++++.++.|+++++.+|||+|||++++++++.. .+.+|||+|+++|+.++.
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV 517 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQI 517 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHH
Confidence 3445666664 489999999999999999999999999999999999999998753 127999999999998777
Q ss_pred HHHHHhccccCcEEEEEECCcchHHHHHHHc------cCCcEEEeccHHHHH--HHHcCC---CCCCCccEEEEechhHh
Q 017573 82 KVMRALGDYLGVKVHACVGGTSVREDQRILQ------AGVHVVVGTPGRVFD--MLRRQS---LRPDYIKMFVLDEADEM 150 (369)
Q Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~iiv~t~~~l~~--~~~~~~---~~~~~~~~viiDE~H~~ 150 (369)
..+... ++....+.++.........+. +.++|+++||+++.. .+.+.. .....+.++||||||.+
T Consensus 518 ~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV 593 (1195)
T PLN03137 518 MNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV 593 (1195)
T ss_pred HHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhh
Confidence 777653 788888888877655544332 468999999999852 111111 11234789999999999
Q ss_pred hccC--cHHHHHH---HHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHH
Q 017573 151 LSRG--FKDQIYD---IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLET 225 (369)
Q Consensus 151 ~~~~--~~~~~~~---~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
..|+ |...+.. +...+ +..+++++|||+++.....+...+........ ......+++. +............
T Consensus 594 SqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~--y~Vv~k~kk~le~ 669 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLW--YSVVPKTKKCLED 669 (1195)
T ss_pred hhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceE--EEEeccchhHHHH
Confidence 9876 5554443 33444 46778999999998777655555443211111 1122223332 2222222223455
Q ss_pred HHHHHHh-ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCC
Q 017573 226 LCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 304 (369)
Q Consensus 226 l~~~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 304 (369)
+..++.. .....+||||.+++.++.++..|...+..+..+||+|+.++|..+++.|.+|+++|||||.++++|||+|++
T Consensus 670 L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDV 749 (1195)
T PLN03137 670 IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV 749 (1195)
T ss_pred HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCC
Confidence 6666543 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHH
Q 017573 305 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 352 (369)
Q Consensus 305 ~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 352 (369)
++||+++.|.+...|.|++||+||.|+.|.|++|+...|...++.+.+
T Consensus 750 R~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 750 RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877766655543
No 31
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.9e-47 Score=351.83 Aligned_cols=332 Identities=20% Similarity=0.264 Sum_probs=257.9
Q ss_pred CCCHHHHHHHHh-CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 2 GLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 2 ~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++++.....|++ |||..|||+|+++++.+..++++++.+|||+|||++++++++.. . +.++|++|+++|+.|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~---g~tlVisPl~sL~~dq 81 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D---GLTLVVSPLISLMKDQ 81 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C---CCEEEEecHHHHHHHH
Confidence 455666667744 89999999999999999999999999999999999999888743 1 2799999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC--
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-- 154 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-- 154 (369)
.+.+... ++....+.++........ ...+..+++++||+.+........+...+++++|+||||.+..++
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 9998875 566777776665444332 233567899999999863222222334468999999999998765
Q ss_pred cHH---HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhc--CCCEEEEecCccccccceeEEEEEccchhhhHHHHHHH
Q 017573 155 FKD---QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM--NKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 229 (369)
Q Consensus 155 ~~~---~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (369)
+.. .+..+...+ +..+++++|||++......+...+ ..+..... ....+++..... ........+..+
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~---~~~r~nl~~~v~---~~~~~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS---SFDRPNIRYTLV---EKFKPLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC---CCCCCcceeeee---eccchHHHHHHH
Confidence 333 334444444 367799999999876655444433 23332221 111222221111 122244556666
Q ss_pred HHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE
Q 017573 230 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 309 (369)
Q Consensus 230 ~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 309 (369)
+....++++||||+++++++.+++.|.+.+..+..+|++++.++|.++++.|.+|+.+|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 66677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 310 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 310 ~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
++.|.|...|.|++||+||.|.+|.+++++++.|...++.+
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999887665544
No 32
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.8e-49 Score=322.88 Aligned_cols=366 Identities=33% Similarity=0.564 Sum_probs=314.4
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhh--------ccCCCccEEEEcC
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD--------YGLVQCQALVLAP 72 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~--------~~~~~~~~liv~P 72 (369)
|-+|.-+.+.|++.|+.+|+|+|.+.++-++.|++.+=.|-||||||+++.+++.-... ....++-.||+||
T Consensus 175 MKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicP 254 (610)
T KOG0341|consen 175 MKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICP 254 (610)
T ss_pred ccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcC
Confidence 45788999999999999999999999999999999999999999999888766553321 1234557999999
Q ss_pred CHHHHHHHHHHHHHhcccc------CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEec
Q 017573 73 TRELAQQIEKVMRALGDYL------GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 146 (369)
Q Consensus 73 ~~~l~~q~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE 146 (369)
+++|+.|..+-+..+...+ .++...+.|+....++...+.++.+|+|+||.+|..++..+...+.-++++.+||
T Consensus 255 SRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDE 334 (610)
T KOG0341|consen 255 SRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDE 334 (610)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhh
Confidence 9999999999888775444 4567788899999888888999999999999999999999999988899999999
Q ss_pred hhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHH
Q 017573 147 ADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL 226 (369)
Q Consensus 147 ~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (369)
++++.+.+|...+..++..+....|.+++|||++..+..+....+.+|+.+.+.+.....-.+.+-...+ ..+.++-.+
T Consensus 335 ADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV-kqEaKiVyl 413 (610)
T KOG0341|consen 335 ADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV-KQEAKIVYL 413 (610)
T ss_pred HHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHH-HhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999876654432222111111 122334444
Q ss_pred HHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcE
Q 017573 227 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 306 (369)
Q Consensus 227 ~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 306 (369)
.+.+++.+ .++|||+....++..++++|--.|+.+..+||+-++++|...++.|+.|+.+|||+|+.++.|+|+|++.|
T Consensus 414 LeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqH 492 (610)
T KOG0341|consen 414 LECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQH 492 (610)
T ss_pred HHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchh
Confidence 44444433 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHhccccccCCcchhhc
Q 017573 307 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 307 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
||.++.|.....|.+|+||.||.|+.|.+.+|.... +...+-.+-..+...-+++|+.|..|
T Consensus 493 VINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 493 VINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred hccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 999999999999999999999999999999999865 66677788888888888888777654
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=324.88 Aligned_cols=353 Identities=29% Similarity=0.462 Sum_probs=289.0
Q ss_pred CCCCHHHHHHHH-hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc------cCCCccEEEEcCC
Q 017573 1 MGLQENLLRGIY-AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQALVLAPT 73 (369)
Q Consensus 1 ~~l~~~i~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~------~~~~~~~liv~P~ 73 (369)
+||++.+.+.|+ .+++..|+.+|+++++.+++|++++|.++||||||++|++++.+.+.. ...++-+||++||
T Consensus 141 LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPT 220 (708)
T KOG0348|consen 141 LGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPT 220 (708)
T ss_pred cCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEech
Confidence 699999999995 489999999999999999999999999999999999999999988743 2234569999999
Q ss_pred HHHHHHHHHHHHHhccccCcEE-EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhh
Q 017573 74 RELAQQIEKVMRALGDYLGVKV-HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~ 151 (369)
++|+.|.++.++++...+.+-| ..+.||+....++.-+..+++|+|+||.++..++.+ ..+..+.+..+|+||++++.
T Consensus 221 REL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrll 300 (708)
T KOG0348|consen 221 RELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLL 300 (708)
T ss_pred HHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHH
Confidence 9999999999999887665444 346677766666666778899999999999998876 34556778999999999999
Q ss_pred ccCcHHHHHHHHhhCC-------------ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc----------------
Q 017573 152 SRGFKDQIYDIFQLLP-------------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD---------------- 202 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~-------------~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~---------------- 202 (369)
+.+|.+.+..+++.+. ...|-+++|||+......+...-+.+|+.+..+..
T Consensus 301 eLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~ 380 (708)
T KOG0348|consen 301 ELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDD 380 (708)
T ss_pred hccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCC
Confidence 9999999998887762 23677899999988888888888888877762110
Q ss_pred ---------cccccceeEEEEEccchhhh---HHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC------------
Q 017573 203 ---------ELTLEGIKQFYVNVEKEEWK---LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------ 258 (369)
Q Consensus 203 ---------~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~------------ 258 (369)
...++.+.+.|..+++...- ...+....+.....|+|||+.+.+.++.-+..|...
T Consensus 381 ~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~ 460 (708)
T KOG0348|consen 381 GPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAP 460 (708)
T ss_pred cccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCc
Confidence 11223344445555543221 122333344445669999999999998888777533
Q ss_pred ----------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhccccc
Q 017573 259 ----------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 328 (369)
Q Consensus 259 ----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 328 (369)
+.++..+||.|++++|..+++.|....-.||+||+++++|+|+|.+.+||.|++|.+..+|++|+||..|
T Consensus 461 ~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTAR 540 (708)
T KOG0348|consen 461 DSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTAR 540 (708)
T ss_pred ccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhh
Confidence 3468899999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeccccHHHHHHHHHH
Q 017573 329 FGRKGVAINFVTRDDERMLFDIQKF 353 (369)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (369)
.|.+|.+++|..+.+.++++.+...
T Consensus 541 aG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 541 AGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred ccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999977665443
No 34
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-46 Score=357.49 Aligned_cols=328 Identities=24% Similarity=0.317 Sum_probs=250.6
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhc-cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+|||+.+.+.+.+.|+.+|+|+|.++++. +.+++++++++|||+|||+++.++++..+..+ ++++|++|+++|+.|
T Consensus 6 l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~---~kal~i~P~raLa~q 82 (737)
T PRK02362 6 LPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG---GKALYIVPLRALASE 82 (737)
T ss_pred cCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC---CcEEEEeChHHHHHH
Confidence 58999999999999999999999999998 67899999999999999999999999888643 389999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
..+.|.++.. .++++..++|+...... ....++|+|+||+++..++++.......++++|+||+|.+.+..+...+
T Consensus 83 ~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 83 KFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHH
Confidence 9999998643 47889888887653322 1245799999999998888876555677999999999998876666666
Q ss_pred HHHHhh---CCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeE--------------EEEEccchhhh
Q 017573 160 YDIFQL---LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ--------------FYVNVEKEEWK 222 (369)
Q Consensus 160 ~~~~~~---~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 222 (369)
..++.. ..+..|++++|||++ +..++..++-.... . ....+..+.. ...........
T Consensus 159 e~il~rl~~~~~~~qii~lSATl~-n~~~la~wl~~~~~--~---~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 232 (737)
T PRK02362 159 EVTLAKLRRLNPDLQVVALSATIG-NADELADWLDAELV--D---SEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDT 232 (737)
T ss_pred HHHHHHHHhcCCCCcEEEEcccCC-CHHHHHHHhCCCcc--c---CCCCCCCCeeeEecCCeeccccccccCCCccchHH
Confidence 555443 356789999999986 33344433322110 0 0000000000 00000111122
Q ss_pred HHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCC------------------------------------CeeEEec
Q 017573 223 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD------------------------------------HTVSATH 266 (369)
Q Consensus 223 ~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~ 266 (369)
...+.+.+. .++++||||++++.++.+++.|.... ..++.+|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 233333322 45799999999999998888776431 3688999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec-----CCCCccchhhhhcccccCCCc--eeE
Q 017573 267 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGRK--GVA 335 (369)
Q Consensus 267 ~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~~~~~~~Q~~GR~~R~~~~--~~~ 335 (369)
++++.++|..+++.|++|.++||+||+.+++|+|+|..++||. ++ .|.+..+|.||+||+||.|.+ |.+
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ 390 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEA 390 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999988885 43 477889999999999999865 899
Q ss_pred EEEecccc
Q 017573 336 INFVTRDD 343 (369)
Q Consensus 336 ~~~~~~~~ 343 (369)
+++..+.+
T Consensus 391 ii~~~~~~ 398 (737)
T PRK02362 391 VLLAKSYD 398 (737)
T ss_pred EEEecCch
Confidence 99887653
No 35
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-46 Score=349.22 Aligned_cols=326 Identities=22% Similarity=0.311 Sum_probs=257.7
Q ss_pred HHH-HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 9 RGI-YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 9 ~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..| +.|||.++||.|.++++.++.|+++++.+|||+|||++++++++.. . ..++|++|+++|+.|+.+.++.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~---g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K---GLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C---CcEEEEcCCHHHHHHHHHHHHHc
Confidence 345 3499999999999999999999999999999999999998887742 1 27899999999999999998875
Q ss_pred ccccCcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC--cHHH---
Q 017573 88 GDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQ--- 158 (369)
Q Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~--~~~~--- 158 (369)
+..+..++++........ ...+..+++++||+.+.............++++|+||+|.+..++ +...
T Consensus 77 ----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~ 152 (591)
T TIGR01389 77 ----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQR 152 (591)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHH
Confidence 677888887776554433 334678999999999865333333445668999999999998765 4433
Q ss_pred HHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcC--CCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCC
Q 017573 159 IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236 (369)
Q Consensus 159 ~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (369)
+..+...++.. +++++|||+++.....+...+. .+..+.. ....+++.. .......+...+..++....+.
T Consensus 153 l~~l~~~~~~~-~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~---~v~~~~~~~~~l~~~l~~~~~~ 225 (591)
T TIGR01389 153 LGSLAERFPQV-PRIALTATADAETRQDIRELLRLADANEFIT---SFDRPNLRF---SVVKKNNKQKFLLDYLKKHRGQ 225 (591)
T ss_pred HHHHHHhCCCC-CEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCCcEE---EEEeCCCHHHHHHHHHHhcCCC
Confidence 33444555544 4999999998877666665554 2222211 112222222 1212233556677777766678
Q ss_pred CeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCc
Q 017573 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 316 (369)
Q Consensus 237 k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~ 316 (369)
++||||++++.++.+++.|...+..+..+|++++.++|..+++.|.+|+++|||||+++++|+|+|++++||++++|.|.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 017573 317 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 351 (369)
Q Consensus 317 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 351 (369)
..|.|++||+||.|+.+.+++++++.|...++.+.
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999988776655443
No 36
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-48 Score=326.89 Aligned_cols=356 Identities=29% Similarity=0.441 Sum_probs=290.2
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhcc-------------CCCcc
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYG-------------LVQCQ 66 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~-------------~~~~~ 66 (369)
|+||..+.++|+.+||..|+++|...++++..| .+++=.|.||||||+++-+++++.+... ...+-
T Consensus 186 l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~ 265 (731)
T KOG0347|consen 186 LFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPI 265 (731)
T ss_pred CCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcce
Confidence 579999999999999999999999999999998 8999999999999999999999854221 12223
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCC---CCCccEEE
Q 017573 67 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR---PDYIKMFV 143 (369)
Q Consensus 67 ~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~---~~~~~~vi 143 (369)
.||++||++|+.|....+.......++.+..+.||.....+.+++...++|+|+||.+|..++...... ...+.++|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLV 345 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLV 345 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999876653 34578999
Q ss_pred EechhHhhccCcHHHHHHHHhhCC-----ccCcEEEEEeeCChhHHH---------------------HHH--HhcCCCE
Q 017573 144 LDEADEMLSRGFKDQIYDIFQLLP-----AKVQVGVFSATMPPEALE---------------------ITR--KFMNKPV 195 (369)
Q Consensus 144 iDE~H~~~~~~~~~~~~~~~~~~~-----~~~~~i~~saT~~~~~~~---------------------~~~--~~~~~~~ 195 (369)
+||++++...++...+..++..+. ...|.+.+|||+.-.... ++. .+..+|.
T Consensus 346 lDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpk 425 (731)
T KOG0347|consen 346 LDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPK 425 (731)
T ss_pred EccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCe
Confidence 999999999999999999988875 357899999998522111 111 1223343
Q ss_pred EEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 017573 196 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 275 (369)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
.+...+.......+....+.++..+ +--.+..++.++ ++++|||||+++.+..+.-+|...++....+|+.|.+.+|.
T Consensus 426 iiD~t~q~~ta~~l~Es~I~C~~~e-KD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRL 503 (731)
T KOG0347|consen 426 IIDLTPQSATASTLTESLIECPPLE-KDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRL 503 (731)
T ss_pred eEecCcchhHHHHHHHHhhcCCccc-cceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Confidence 3333333222222111111111100 111111112222 37999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhc
Q 017573 276 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
+-+++|.+....|||||+++.+|+|||++.|||+|-.|.+...|++|.||+.|.++.|..+.++.+.+...+.+++.-++
T Consensus 504 knLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~ 583 (731)
T KOG0347|consen 504 KNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLK 583 (731)
T ss_pred HhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888776
Q ss_pred ccc
Q 017573 356 VVI 358 (369)
Q Consensus 356 ~~~ 358 (369)
...
T Consensus 584 k~~ 586 (731)
T KOG0347|consen 584 KKE 586 (731)
T ss_pred hcc
Confidence 543
No 37
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-47 Score=345.07 Aligned_cols=365 Identities=35% Similarity=0.561 Sum_probs=335.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-----CCCccEEEEcCCHHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAPTREL 76 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~liv~P~~~l 76 (369)
|++.-|..-++++||..|+|+|.+||+++..|+++|-+|-||||||++++++++.+.... ..+|-++|++|+++|
T Consensus 371 gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrel 450 (997)
T KOG0334|consen 371 GLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTREL 450 (997)
T ss_pred CchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHH
Confidence 788889999999999999999999999999999999999999999999988888665322 236689999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCc---cEEEEechhHhhcc
Q 017573 77 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYI---KMFVLDEADEMLSR 153 (369)
Q Consensus 77 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~---~~viiDE~H~~~~~ 153 (369)
+.|..+++++|+..+++.+...+|+.........+.+.+.|+|+||..+...+-.+.....++ .++++||++++.+.
T Consensus 451 a~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdm 530 (997)
T KOG0334|consen 451 AMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDM 530 (997)
T ss_pred HHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhhee
Confidence 999999999999999999999999999999988889999999999999988876655555444 49999999999999
Q ss_pred CcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 154 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
+|......+++.+++..|.+.+|||.+.....+....+.+|+.+.+.........+.+.+..+.....++..+.+++...
T Consensus 531 gfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~ 610 (997)
T KOG0334|consen 531 GFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGER 610 (997)
T ss_pred ccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888889999999988887777888888887654
Q ss_pred -cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC
Q 017573 234 -AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 312 (369)
Q Consensus 234 -~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 312 (369)
...++||||.+.+.|..+.+.|.+.++.+..+||+.++.+|...++.|+++..++|++|+.+..|+|++.+..||+++.
T Consensus 611 ~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 611 YEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred hhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchh
Q 017573 313 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 366 (369)
Q Consensus 313 ~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (369)
|....+|.+|.||+||.|++|.+++|..+.+.+....|.+++...-..+|.+|.
T Consensus 691 pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~ 744 (997)
T KOG0334|consen 691 PNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQ 744 (997)
T ss_pred chhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHH
Confidence 999999999999999999999999999999999999999999777777776554
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.5e-47 Score=327.70 Aligned_cols=341 Identities=34% Similarity=0.574 Sum_probs=314.6
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
|...+...|...+|..|+++|..|++.+..+-+.||++-.|+|||+++...+++.+.........+||+|+++++-|..+
T Consensus 32 l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~ 111 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKE 111 (980)
T ss_pred HHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHH
Confidence 34567788899999999999999999999999999999999999999988888888877777799999999999999999
Q ss_pred HHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHHHH
Q 017573 83 VMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIY 160 (369)
Q Consensus 83 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~~~ 160 (369)
.+.+.+..+ |+++.+..||+....+...+ +.++|+|+||.++.+++....++.+.++++|+|||+.+.+ ..+...++
T Consensus 112 tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In 190 (980)
T KOG4284|consen 112 TVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDIN 190 (980)
T ss_pred HHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHH
Confidence 999988744 89999999999866654443 3578999999999999999999999999999999999986 67889999
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccch-------hhhHHHHHHHHHhc
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE-------EWKLETLCDLYETL 233 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 233 (369)
.+++.+|...|++.+|||.+.++.+.+..++.+|..+....+....-+++++++..... ..+.+.|.++++..
T Consensus 191 ~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i 270 (980)
T KOG4284|consen 191 IIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI 270 (980)
T ss_pred HHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998877653 34778888899998
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 313 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 313 (369)
+-...||||+....|+-++.+|...|+.+.+++|.|++.+|..+++++++-..+|||+|+...+|+|-+.++.||..++|
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p 350 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAP 350 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccccH
Q 017573 314 TQPENYLHRIGRSGRFGRKGVAINFVTRDDE 344 (369)
Q Consensus 314 ~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 344 (369)
.+..+|.+||||+||.|..|.+++|+....+
T Consensus 351 ~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 351 ADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999987655
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-45 Score=345.12 Aligned_cols=332 Identities=20% Similarity=0.273 Sum_probs=252.7
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhc-cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+++++.+.+.+++.|+..|+|+|.++++. +..++++++++|||+|||+++.+++++.+... +.+++|++|+++|+.|
T Consensus 6 l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~aLa~q 83 (720)
T PRK00254 6 LRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEE 83 (720)
T ss_pred cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHH
Confidence 57999999999999999999999999986 78899999999999999999999998876542 2389999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
+.+.+.++. ..+.++..++|+...... . ...++|+|+||+++..++.+.....++++++|+||+|.+.+......+
T Consensus 84 ~~~~~~~~~-~~g~~v~~~~Gd~~~~~~--~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~l 159 (720)
T PRK00254 84 KYREFKDWE-KLGLRVAMTTGDYDSTDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATL 159 (720)
T ss_pred HHHHHHHHh-hcCCEEEEEeCCCCCchh--h-hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHH
Confidence 999998864 458899999888764322 2 246799999999998888766556778999999999999877778888
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccc-cc-eeEEEEEccc------hhhhHHHHHHHHH
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL-EG-IKQFYVNVEK------EEWKLETLCDLYE 231 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~------~~~~~~~l~~~~~ 231 (369)
..++..++...|++++|||++ +..++.. |+....... ....... .. ..+.+..... .......+.+.+.
T Consensus 160 e~il~~l~~~~qiI~lSATl~-n~~~la~-wl~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 236 (720)
T PRK00254 160 EMILTHMLGRAQILGLSATVG-NAEELAE-WLNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK 236 (720)
T ss_pred HHHHHhcCcCCcEEEEEccCC-CHHHHHH-HhCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH
Confidence 888988888999999999996 3444444 443322111 1111000 00 0000111111 0112223333333
Q ss_pred hccCCCeEEEeCCHhhHHHHHHHHhhC---------------------------------CCeeEEecCCCCHHHHHHHH
Q 017573 232 TLAITQSVIFVNTRRKVDWLTDKMRSR---------------------------------DHTVSATHGDMDQNTRDIIM 278 (369)
Q Consensus 232 ~~~~~k~lv~~~~~~~~~~~~~~l~~~---------------------------------~~~~~~~~~~~~~~~r~~~~ 278 (369)
.++++||||++++.++.++..|... ...+..+|+++++++|..++
T Consensus 237 --~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve 314 (720)
T PRK00254 237 --KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIE 314 (720)
T ss_pred --hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHH
Confidence 3579999999999988776655321 23589999999999999999
Q ss_pred HHHhcCCCcEEEEecCCcCCCCCCCCcEEEE-------ecC-CCCccchhhhhcccccCC--CceeEEEEecccc
Q 017573 279 REFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDL-PTQPENYLHRIGRSGRFG--RKGVAINFVTRDD 343 (369)
Q Consensus 279 ~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------~~~-~~~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~ 343 (369)
+.|++|.++|||||+.++.|+|+|..++||. ++. +.+..+|.||+||+||.| ..|.++++....+
T Consensus 315 ~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 315 DAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999999999999999999999988884 222 224568999999999975 5699999988755
No 40
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-46 Score=305.08 Aligned_cols=358 Identities=32% Similarity=0.532 Sum_probs=327.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC-CCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~liv~P~~~l~~q 79 (369)
|||+.-+.+++.+.||.+|+|+|++.++.+++++++.-.+-||+|||.++++++++++.... .+.+++++.|+++|+.|
T Consensus 26 mgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 26 MGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred cCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987544 44589999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
..+...++...++++...+.|+....++...+..+.|||++||..+.++.-...+.++.+.+||+||++.+...+|.+++
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql 185 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQL 185 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHH
Confidence 99999999999999999999999988888888878899999999999888877788899999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHh-ccCCCe
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-LAITQS 238 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~k~ 238 (369)
..++..++...|.++||||.+..+.+..+..+..|..+..+.+....+.....+..+...+ +...|..++.. ..++.+
T Consensus 186 ~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~~~~~~t 264 (529)
T KOG0337|consen 186 HEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGRIKDKQT 264 (529)
T ss_pred HHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhccccccce
Confidence 9999999999999999999999999999999999999887777777777777777666644 55555555544 345689
Q ss_pred EEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccc
Q 017573 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPEN 318 (369)
Q Consensus 239 lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~ 318 (369)
++|+.+.++++.+...|...+..+..+++.+++..|..-+..|..+...+++.|+.+.+|+|+|..+.||.++.|.....
T Consensus 265 ~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~kl 344 (529)
T KOG0337|consen 265 IVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKL 344 (529)
T ss_pred eEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 319 YLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 319 ~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
|.+|+||+.|.|+.|.+|.++.+.+..++-++.-++...+.
T Consensus 345 FvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 345 FVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred EEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 99999999999999999999999999999999998887653
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.5e-44 Score=345.66 Aligned_cols=333 Identities=22% Similarity=0.316 Sum_probs=245.1
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc------CCCccEEEEcCCHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------LVQCQALVLAPTREL 76 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~------~~~~~~liv~P~~~l 76 (369)
|++.+.+.+.+ +|..|+|+|.++++.+.+|++++++||||||||+++++++++.+... ..+.+++|++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67777777766 68899999999999999999999999999999999999999877532 223479999999999
Q ss_pred HHHHHHHHHH-------hc----ccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC--CCCCccEE
Q 017573 77 AQQIEKVMRA-------LG----DYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMF 142 (369)
Q Consensus 77 ~~q~~~~~~~-------~~----~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~--~~~~~~~v 142 (369)
+.|+.+.+.+ +. ... ++++...+|+.........+.+.++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886653 21 222 6788889999887777777777889999999999877755433 35678999
Q ss_pred EEechhHhhccCcHHH----HHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCC-------CEEEEecCccccccceeE
Q 017573 143 VLDEADEMLSRGFKDQ----IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK-------PVRILVKRDELTLEGIKQ 211 (369)
Q Consensus 143 iiDE~H~~~~~~~~~~----~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 211 (369)
|+||+|.+.+...... +.++....+...|++++|||+++ .......+... +..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 9999999986544333 33444444467899999999864 23333333221 11111 111111100100
Q ss_pred EE-----EEccch---hhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC------CCeeEEecCCCCHHHHHHH
Q 017573 212 FY-----VNVEKE---EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDII 277 (369)
Q Consensus 212 ~~-----~~~~~~---~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~r~~~ 277 (369)
.. ...... ......+.+++. ..+++||||++++.++.++..|.+. +..+..+||+++.++|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 00 000111 111223333332 3468999999999999999999873 4579999999999999999
Q ss_pred HHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC-CCceeEEEEec
Q 017573 278 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVT 340 (369)
Q Consensus 278 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~-~~~~~~~~~~~ 340 (369)
++.|++|..++||||+.++.|+|+|++++||.++.|.+...|.||+||+||. |..+..+++..
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999987 44444444444
No 42
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.1e-44 Score=302.78 Aligned_cols=326 Identities=22% Similarity=0.249 Sum_probs=253.7
Q ss_pred CCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
+..++|.||.......+.+ |++|+.|||-|||+++++.+...+...+. ++|+++||+.|+.|+++.+.+........
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 3458999999998777766 99999999999999999999988876543 89999999999999999999998776778
Q ss_pred EEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEE
Q 017573 95 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 174 (369)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (369)
+..++|...+++..... ....|+|+||+...+.+..+.++...+.++|+||||+..+...+..+.+.+....+++.+++
T Consensus 89 i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 88999988876555443 44689999999999999999999999999999999998766655666665666667888999
Q ss_pred EEeeCChhHHHH---HHHhcCCCEEEEecCcccccc---ceeEEEEEccchh----------------------------
Q 017573 175 FSATMPPEALEI---TRKFMNKPVRILVKRDELTLE---GIKQFYVNVEKEE---------------------------- 220 (369)
Q Consensus 175 ~saT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------------------- 220 (369)
+||||..+.+.. +..+.-..+.+....+....+ .++.-+..+.-..
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 999998655433 222222222222211111100 0001111110000
Q ss_pred --------------------------------------------------------------------------------
Q 017573 221 -------------------------------------------------------------------------------- 220 (369)
Q Consensus 221 -------------------------------------------------------------------------------- 220 (369)
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence
Q ss_pred --------------------hhHHHHHHHH----HhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeE--Eec-------C
Q 017573 221 --------------------WKLETLCDLY----ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS--ATH-------G 267 (369)
Q Consensus 221 --------------------~~~~~l~~~~----~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~--~~~-------~ 267 (369)
.+++.+.+++ ++.++.++|||++.++.|+.+.+.|.+.+.++. ++. .
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccc
Confidence 0444444444 344567999999999999999999999988764 222 4
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 268 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 268 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+|++.++.+++++|++|+++|||||++.++|+|+|.++.||++++..|+..++||.||+||. ++|.+++++..++.+
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 58999999999999999999999999999999999999999999999999999999999997 889999999988433
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.1e-44 Score=329.06 Aligned_cols=333 Identities=21% Similarity=0.274 Sum_probs=267.9
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC-----CCccEEEEcCCHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VQCQALVLAPTRELA 77 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~-----~~~~~liv~P~~~l~ 77 (369)
|++.+++.+... |.+||+.|.+|++.+.+|+|+++.||||||||.+++++++..+.... .+-.+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999888 99999999999999999999999999999999999999999987652 234799999999999
Q ss_pred HHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEechhHhhccCc
Q 017573 78 QQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR--PDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 78 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~--~~~~~~viiDE~H~~~~~~~ 155 (369)
.++.+++..+...+|+++.+-+|+++..+..+...+++||++|||++|.-++....+. +.++..||+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999999998888999999999999998777654332 56689999999999985543
Q ss_pred H----HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCC--EEEEecCccccccceeEEEEEcc------chhhhH
Q 017573 156 K----DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFYVNVE------KEEWKL 223 (369)
Q Consensus 156 ~----~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 223 (369)
. -.+.++....+ ..|.|++|||-. +.....+.+.... ..+..... .....+.-..-... ......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccchhHHHH
Confidence 3 23344444445 889999999997 4445555555543 22222211 11111111111111 112234
Q ss_pred HHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCC-CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC
Q 017573 224 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 302 (369)
Q Consensus 224 ~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 302 (369)
..+.++++++. .+|||+|++..++.++..|++.+ ..+...||.++.+.|.++.+.|++|+.+.+|||+.++-|+|+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 55556666554 89999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCccchhhhhcccccC-CCceeEEEEecc
Q 017573 303 QVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTR 341 (369)
Q Consensus 303 ~~~~vi~~~~~~~~~~~~Q~~GR~~R~-~~~~~~~~~~~~ 341 (369)
+++.||+++.|.+...+.||+||+|+. +.....+++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999986 555666666655
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.5e-43 Score=335.30 Aligned_cols=321 Identities=20% Similarity=0.253 Sum_probs=248.6
Q ss_pred CCHHHHHHH-HhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 3 LQENLLRGI-YAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 3 l~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
.+..+...+ ..++| +|++.|.++++.+.++ .+.++++|||+|||.+++.+++..+..+. +++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~---qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGK---QVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCC---eEEEEeCcHH
Confidence 345556666 55898 6999999999999874 68999999999999999999988876653 8999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
|+.|+++.++++....++++..+++.....+.... ..+.++|+|+||..+ .......+++++|+||+|++.
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc
Confidence 99999999999888788888888887665444332 234689999998533 234566779999999999863
Q ss_pred ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHH
Q 017573 152 SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (369)
. .....+..+++..++++|||||.+...........++..+...... ...+..++..... ......+...+
T Consensus 587 v-----~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-~~i~~~i~~el- 657 (926)
T TIGR00580 587 V-----KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-ELVREAIRREL- 657 (926)
T ss_pred h-----hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH-HHHHHHHHHHH-
Confidence 2 2234455567788999999999877665555444455444332221 2234444333322 11112222222
Q ss_pred hccCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE
Q 017573 232 TLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 309 (369)
Q Consensus 232 ~~~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 309 (369)
..++++++||++++.++.+++.|++. +.++..+||+|+.++|.+++++|.+|+.+|||||+++++|+|+|++++||+
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 24578999999999999999999985 678999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CccchhhhhcccccCCCceeEEEEeccc
Q 017573 310 YDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 310 ~~~~~-~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
.+.+. +..++.|++||+||.|+.|.|++++++.
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 88754 5678999999999999999999998754
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-44 Score=337.19 Aligned_cols=328 Identities=21% Similarity=0.282 Sum_probs=243.7
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++||+.+.+.+++.++. |+++|.++++.+.+++++++++|||+|||+++.+++++.+..+. +++|++|+++|+.|.
T Consensus 6 ~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~---k~v~i~P~raLa~q~ 81 (674)
T PRK01172 6 LGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGL---KSIYIVPLRSLAMEK 81 (674)
T ss_pred cCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCC---cEEEEechHHHHHHH
Confidence 58999999999999985 99999999999999999999999999999999999988776543 899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
++++.++. ..+..+....|+...... ....++|+|+||+++..++.++.....+++++|+||+|.+.+..+...+.
T Consensus 82 ~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le 157 (674)
T PRK01172 82 YEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLE 157 (674)
T ss_pred HHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHH
Confidence 99998864 457888888877653322 12457999999999998888877667789999999999987666555555
Q ss_pred HHH---hhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEE-----EccchhhhHHHHHHHHHh
Q 017573 161 DIF---QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV-----NVEKEEWKLETLCDLYET 232 (369)
Q Consensus 161 ~~~---~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 232 (369)
.++ ...++..|++++|||++ +..++.. |+...... . ...+..+..... ...........+..++..
T Consensus 158 ~ll~~~~~~~~~~riI~lSATl~-n~~~la~-wl~~~~~~-~---~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~ 231 (674)
T PRK01172 158 TVLSSARYVNPDARILALSATVS-NANELAQ-WLNASLIK-S---NFRPVPLKLGILYRKRLILDGYERSQVDINSLIKE 231 (674)
T ss_pred HHHHHHHhcCcCCcEEEEeCccC-CHHHHHH-HhCCCccC-C---CCCCCCeEEEEEecCeeeecccccccccHHHHHHH
Confidence 554 34456789999999986 3444444 43322111 0 111111111000 000000001112222222
Q ss_pred --ccCCCeEEEeCCHhhHHHHHHHHhhCC-------------------------CeeEEecCCCCHHHHHHHHHHHhcCC
Q 017573 233 --LAITQSVIFVNTRRKVDWLTDKMRSRD-------------------------HTVSATHGDMDQNTRDIIMREFRSGS 285 (369)
Q Consensus 233 --~~~~k~lv~~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~ 285 (369)
..++++||||++++.++.+++.|.... ..+..+|++++.++|..+++.|++|.
T Consensus 232 ~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~ 311 (674)
T PRK01172 232 TVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY 311 (674)
T ss_pred HHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 245799999999999999998886531 24788999999999999999999999
Q ss_pred CcEEEEecCCcCCCCCCCCcEEEEecC---------CCCccchhhhhcccccCCC--ceeEEEEecccc
Q 017573 286 SRVLITTDLLARGIDVQQVSLVINYDL---------PTQPENYLHRIGRSGRFGR--KGVAINFVTRDD 343 (369)
Q Consensus 286 ~~vli~t~~~~~G~d~~~~~~vi~~~~---------~~~~~~~~Q~~GR~~R~~~--~~~~~~~~~~~~ 343 (369)
++|||||++++.|+|+|... ||+.+. +.+..++.||+||+||.|. .|.++++....+
T Consensus 312 i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 312 IKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred CeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999754 444442 3467789999999999985 477887766543
No 46
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-44 Score=303.14 Aligned_cols=350 Identities=27% Similarity=0.436 Sum_probs=281.6
Q ss_pred HHHHHHHhCCCCCCcHhhhhhhhcccc---------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCC-ccEEEEcCCHH
Q 017573 6 NLLRGIYAYGFEKPSAIQQRGIVPFCK---------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ-CQALVLAPTRE 75 (369)
Q Consensus 6 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~---------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~liv~P~~~ 75 (369)
.+..++.++++.+.-|.|...++.+++ .+++.|.||||||||++|.++|.+.+...+.. -+++||+|++.
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHH
Confidence 344568899999999999999888743 58999999999999999999999998766433 37999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc-C----CcEEEeccHHHHHHHH-cCCCCCCCccEEEEechhH
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-G----VHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEADE 149 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~----~~iiv~t~~~l~~~~~-~~~~~~~~~~~viiDE~H~ 149 (369)
|+.|.++.|.++....++.|..+.|......+.+.+.+ . .||+|+||.+|..++. ...+.+++++++|+||+++
T Consensus 227 L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred HHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH
Confidence 99999999999999999999999998887666555543 3 4899999999999998 6778899999999999999
Q ss_pred hhccCcHHHHHHHHhhC----------------------------------CccCcEEEEEeeCChhHHHHHHHhcCCCE
Q 017573 150 MLSRGFKDQIYDIFQLL----------------------------------PAKVQVGVFSATMPPEALEITRKFMNKPV 195 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~----------------------------------~~~~~~i~~saT~~~~~~~~~~~~~~~~~ 195 (369)
+.+..|...+..++..+ .+....+.+|||+..+...+...-+..|.
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr 386 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR 386 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc
Confidence 98765444333222221 12234566788887766666666666664
Q ss_pred EEEec----CccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHh----hCCCeeEEecC
Q 017573 196 RILVK----RDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR----SRDHTVSATHG 267 (369)
Q Consensus 196 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~----~~~~~~~~~~~ 267 (369)
...+. .....+..+.+..+.... ..+--.+..++......++|+|+++.+.+..++..|+ +-+.++..++|
T Consensus 387 l~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 387 LFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred eEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 44333 233344455555554433 2244556667777777899999999999999999887 22455666889
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHH
Q 017573 268 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347 (369)
Q Consensus 268 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~ 347 (369)
.++...|.+.++.|..|++++|||++++.+|+|+.+++.||.|++|.+..+|++|+||.+|.|+.|.++.+.+..+...+
T Consensus 466 ~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcc
Q 017573 348 FDIQKFYNV 356 (369)
Q Consensus 348 ~~~~~~~~~ 356 (369)
.++-+....
T Consensus 546 ~klL~~~~~ 554 (620)
T KOG0350|consen 546 SKLLKKTNL 554 (620)
T ss_pred HHHHHHhcc
Confidence 877666554
No 47
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=308.65 Aligned_cols=366 Identities=32% Similarity=0.455 Sum_probs=318.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-----CCCccEEEEcCCHHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAPTREL 76 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~liv~P~~~l 76 (369)
..++.++.++...+|..|+|.|.++++-+.++++++.++|||+|||+++.++++..+... ..+-+++|+.|+++|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 346788999999999999999999999999999999999999999999999999888543 334479999999999
Q ss_pred HHHHHHHHHHhc--cccCcEEEEEECCcchHHH-HHHHccCCcEEEeccHHHHHHHHcCC--CCCCCccEEEEechhHhh
Q 017573 77 AQQIEKVMRALG--DYLGVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEML 151 (369)
Q Consensus 77 ~~q~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~~~~~~~~~iiv~t~~~l~~~~~~~~--~~~~~~~~viiDE~H~~~ 151 (369)
+.|.++++.++. ...++.+............ .......++++++||..+...+.... .+++.+..+|+||++.+.
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 4445554443333221111 11122357999999999988888766 667888999999999999
Q ss_pred cc-CcHHHHHHHHhhCCc-cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHH
Q 017573 152 SR-GFKDQIYDIFQLLPA-KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 229 (369)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~-~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (369)
.. .+..++..+++.+.+ ...+-++|||.+...++...........+.+...+.....+.+-...+.....+.-.+.++
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHH
Confidence 88 888888888888765 4455569999999999999998889988888887777788888888888888899999999
Q ss_pred HHhccCCCeEEEeCCHhhHHHHHHHH-hhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEE
Q 017573 230 YETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308 (369)
Q Consensus 230 ~~~~~~~k~lv~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 308 (369)
+...-..+++||+.+.+.|..+...| .-.+.++.++||+.+..+|++.++.|+.|++.||+||+.+++|+|+.+++.||
T Consensus 382 v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 382 VASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred HhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 98877789999999999999999999 56688999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 309 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 309 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
.+|.|.+...|++|+||+||.|+.|.+++|++..|...+..+.+.+...--++++++..
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~ 520 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMG 520 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHh
Confidence 99999999999999999999999999999999999999999999999988888887643
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-43 Score=313.56 Aligned_cols=333 Identities=22% Similarity=0.269 Sum_probs=261.6
Q ss_pred HHHHH-HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 7 LLRGI-YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 7 i~~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
+...| +-||+..+|+-|.++++.+..++++++..|||+|||+|+.++++-. .+ .+|+|+|..+|.+++.+.++
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G-~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG-LTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC-CEEEECchHHHHHHHHHHHH
Confidence 34556 4489999999999999999999999999999999999999887753 22 79999999999999999998
Q ss_pred HhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC--cHHHH
Q 017573 86 ALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQI 159 (369)
Q Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~--~~~~~ 159 (369)
.. |+.+..+++....++.... ..+..++++.+||.+........+....+.+++|||||.++.|+ |...+
T Consensus 79 ~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 79 AA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred Hc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 86 7788888887666655443 34468999999999854333323334457999999999999886 55555
Q ss_pred H---HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCC--EEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhcc
Q 017573 160 Y---DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 234 (369)
Q Consensus 160 ~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (369)
. .+...++ +..++++|||.++.....+...+.-. ..+.. ....+++............+...+.+ .....
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~ 229 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALKVVEKGEPSDQLAFLAT-VLPQL 229 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhhhhhcccHHHHHHHHHh-hcccc
Confidence 4 4455565 67799999999987777665555432 12221 22222332222222222222332222 12445
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 314 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 314 (369)
.+..||||.+++.++.+++.|...|.++..||++++.++|..+.+.|.+++.+|+|||.++++|+|-|++++||+++.|.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~ 309 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG 309 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHh
Q 017573 315 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 354 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (369)
|...|.|.+|||||.|.+..+++++++.|....+.+.+..
T Consensus 310 s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 310 SIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred CHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999999999977666555543
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2e-42 Score=334.57 Aligned_cols=318 Identities=18% Similarity=0.210 Sum_probs=249.0
Q ss_pred HHHHHHHhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 6 NLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 6 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+..+....|+| .|++.|.++++.+..+ .+++++++||+|||.+++.+++..+..+ ++++|++|+++|+.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g---~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH---KQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHH
Confidence 34455588999 8999999999999886 7899999999999999887777665543 389999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
+++.+.+.....++++..+.+..+..++...+ .+.++|+|+||+.+. ......+++++|+||+|++..
T Consensus 665 ~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~--- 736 (1147)
T PRK10689 665 HYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV--- 736 (1147)
T ss_pred HHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch---
Confidence 99999987776678888888877766655443 246899999996442 234556789999999999731
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccC
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 235 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (369)
. ....+..++.+.+++++||||.+....+....+.++..+...... ...+..+.........+...+.++. .+
T Consensus 737 ~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~ 809 (1147)
T PRK10689 737 R--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RG 809 (1147)
T ss_pred h--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cC
Confidence 1 234456677889999999999888777777777676655443222 2234444433322222222222222 35
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC-
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 312 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~- 312 (369)
+++++||++++.++.+++.|++. +.++..+||+|+.++|.+++.+|.+|+++|||||+++++|+|+|++++||+.+.
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 78999999999999999999887 678999999999999999999999999999999999999999999999997654
Q ss_pred CCCccchhhhhcccccCCCceeEEEEeccc
Q 017573 313 PTQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 313 ~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
.++...|.|++||+||.|+.|.|++++...
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 346678999999999999999999988653
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.2e-42 Score=322.38 Aligned_cols=317 Identities=19% Similarity=0.256 Sum_probs=237.3
Q ss_pred HHHHHHhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 7 LLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 7 i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+.+-...++| +|++.|+++++.+..+ .+.++++|||||||.+++++++..+..+. +++|++|+++|+.|+
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~---q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGY---QAALMAPTEILAEQH 326 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEeccHHHHHHH
Confidence 3444467888 7999999999999876 47999999999999999999988876544 899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
++.++++....++++..++|+.+....... ..+.++|+|+|+..+.. .....+++++|+||+|++....
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~q-- 399 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVEQ-- 399 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHHH--
Confidence 999999998889999999999886554332 33469999999876643 2345678999999999974322
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCC
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (369)
...+.......++++|||||.+....+.. ..................+...+..........+.+...+ ..+.
T Consensus 400 ---r~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~ 472 (681)
T PRK10917 400 ---RLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AKGR 472 (681)
T ss_pred ---HHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCC
Confidence 12222334467899999999776544332 2221111111111112223333333222222223333332 2456
Q ss_pred CeEEEeCCHh--------hHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcE
Q 017573 237 QSVIFVNTRR--------KVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 306 (369)
Q Consensus 237 k~lv~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 306 (369)
+++|||+.++ .+..+++.|.+. +.++..+||+++.++|.+++++|++|+.+|||||+++++|+|+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 8999999643 456677777765 468999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-CccchhhhhcccccCCCceeEEEEecc
Q 017573 307 VINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTR 341 (369)
Q Consensus 307 vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~~~~~~~ 341 (369)
||+++.+. ....+.|+.||+||.|..|.|++++..
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999876 567899999999999999999999953
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.3e-41 Score=314.71 Aligned_cols=317 Identities=21% Similarity=0.269 Sum_probs=234.6
Q ss_pred HHHHHHHhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 6 NLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 6 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
.+.+.++.++| +|++.|+++++.+..+ .+.++++|||||||.+++++++..+..+. +++|++|+++|+.|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~---qvlilaPT~~LA~Q 299 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGY---QVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCC---cEEEECCHHHHHHH
Confidence 34566688999 8999999999999865 35899999999999999999988876544 89999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
+++.+++++...++++..++|+........ ...+.++|+|+|+..+.. .....+++++|+||+|++....
T Consensus 300 ~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q- 373 (630)
T TIGR00643 300 HYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ- 373 (630)
T ss_pred HHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH-
Confidence 999999998888999999999887655333 234568999999987653 3445678999999999864322
Q ss_pred HHHHHHHHhhCC--ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHh-
Q 017573 156 KDQIYDIFQLLP--AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET- 232 (369)
Q Consensus 156 ~~~~~~~~~~~~--~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 232 (369)
...+..... ..+++++|||||.+....+.. ..................+...+..... ....+..+...
T Consensus 374 ---r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~~~~~~---~~~~~~~i~~~l 445 (630)
T TIGR00643 374 ---RKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVLIKHDE---KDIVYEFIEEEI 445 (630)
T ss_pred ---HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEEeCcch---HHHHHHHHHHHH
Confidence 222333332 257899999999765443322 1111111111111111223333322211 22222222222
Q ss_pred ccCCCeEEEeCCH--------hhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC
Q 017573 233 LAITQSVIFVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 302 (369)
Q Consensus 233 ~~~~k~lv~~~~~--------~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 302 (369)
..+.+++|||+.. ..++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP 525 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVP 525 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccC
Confidence 2356899999876 3456667777653 66899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-CccchhhhhcccccCCCceeEEEEec
Q 017573 303 QVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVT 340 (369)
Q Consensus 303 ~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~~~~~~ 340 (369)
++++||+++.+. +...+.|+.||+||.|+.|.|++++.
T Consensus 526 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 526 NATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999875 57789999999999999999999993
No 52
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.4e-41 Score=305.37 Aligned_cols=300 Identities=15% Similarity=0.142 Sum_probs=215.6
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEE
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 96 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~ 96 (369)
..||++|++++..+..+++.++++|||+|||.++...+...+.. . ..++||++|+++|+.||.+.+.++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-Y-EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 58999999999999999999999999999998765433322222 2 238999999999999999999998654333444
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+.++.... .+.+|+|+|++++...... ....++++|+||||++.+.. +..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEe
Confidence 444444321 3468999999998754322 34568999999999986543 456666676677899999
Q ss_pred eeCChhHHHH--HHHhcCCCEEEEecCccc------cccceeEEEEEc--------------------cchhhhHHHHHH
Q 017573 177 ATMPPEALEI--TRKFMNKPVRILVKRDEL------TLEGIKQFYVNV--------------------EKEEWKLETLCD 228 (369)
Q Consensus 177 aT~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------------------~~~~~~~~~l~~ 228 (369)
|||....... ....+++ +......... ....+....... .........+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996432211 1122222 2211111000 000000000000 001112233333
Q ss_pred HHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cCCcCCCCCCCCc
Q 017573 229 LYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 305 (369)
Q Consensus 229 ~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 305 (369)
+.... .+.+++|||.+.++++.+++.|++.+.++..+||+++.++|.++++.|++|+..+||+| +.+++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33222 35689999999999999999999999999999999999999999999999998999998 7999999999999
Q ss_pred EEEEecCCCCccchhhhhcccccCCCce
Q 017573 306 LVINYDLPTQPENYLHRIGRSGRFGRKG 333 (369)
Q Consensus 306 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~ 333 (369)
+||+..++.|...|.|++||++|.+..+
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999986554
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.8e-40 Score=304.78 Aligned_cols=314 Identities=21% Similarity=0.250 Sum_probs=232.4
Q ss_pred CCCCCCcHhhhhhhhccccCC-cEEEEcCCCChhhHHHHHHHHHhhhccCCCc-cEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQC-QALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~-~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
.||+ |+|+|.++++.++.|+ .+++++|||||||.++.++.+.. ..+...+ ..++++|+++|+.|..+.+.++...+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4776 9999999999999997 57888999999998655444432 2222222 45557799999999999998887644
Q ss_pred -----------------------CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc---------CCC---CC
Q 017573 92 -----------------------GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR---------QSL---RP 136 (369)
Q Consensus 92 -----------------------~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~---------~~~---~~ 136 (369)
++++..+.|+.....+...+..+++|+|+|++.+.+.... +.+ .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 4788899999988777777778899999997655332110 001 14
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhC--Ccc---CcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLL--PAK---VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 211 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~--~~~---~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (369)
.+..++|+|||| .+.+|...+..+++.+ ++. .|+++||||++.+.......+...+..+...........+.+
T Consensus 170 ~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q 247 (844)
T TIGR02621 170 GQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK 247 (844)
T ss_pred ccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEE
Confidence 567899999999 4678899999999864 332 689999999987777777677766665555444444444444
Q ss_pred EEEEccchhhhHHH----HHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHH-----HHHHHHh
Q 017573 212 FYVNVEKEEWKLET----LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD-----IIMREFR 282 (369)
Q Consensus 212 ~~~~~~~~~~~~~~----l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~ 282 (369)
+ +.... ..+... +..++ ....+++|||||+++.++.+++.|++.+. ..+||++++.+|. .+++.|+
T Consensus 248 ~-v~v~~-e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 248 L-VPPSD-EKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred E-EecCh-HHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 3 22222 222222 22222 23457899999999999999999998766 8999999999999 7889998
Q ss_pred c----CC-------CcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCce-eEEEEe
Q 017573 283 S----GS-------SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG-VAINFV 339 (369)
Q Consensus 283 ~----~~-------~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~-~~~~~~ 339 (369)
+ |. ..|||+|+++++|+|++. ++||....| ...|+||+||++|.|+.+ ..+.++
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 6 43 679999999999999986 777775544 589999999999998753 334444
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.6e-41 Score=286.16 Aligned_cols=333 Identities=20% Similarity=0.244 Sum_probs=264.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhc-cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+++|+.+.+.|+..|++.+.|.|..++++ +++|+|.+|..+|+||||++.-++-+..+..+.. |.|+++|..+|++|
T Consensus 199 Ldipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--KmlfLvPLVALANQ 276 (830)
T COG1202 199 LDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLVPLVALANQ 276 (830)
T ss_pred cCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--eEEEEehhHHhhcc
Confidence 57999999999999999999999999988 5689999999999999999998887777665332 89999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
-+++|++-+..+++.+..-.|......... ....++||||+||+.+-.+++.+ -.+.+++.||+||+|.+.+...
T Consensus 277 Ky~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 277 KYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred hHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhc
Confidence 999999988888998877777655443321 12347899999999998777776 5677799999999999876443
Q ss_pred HHHHH---HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHh
Q 017573 156 KDQIY---DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET 232 (369)
Q Consensus 156 ~~~~~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (369)
...+. .-++.+-+..|++++|||.. +..++...+-.+.+.+... |-.++...........+.+.+.++.+.
T Consensus 356 G~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~~R-----PVplErHlvf~~~e~eK~~ii~~L~k~ 429 (830)
T COG1202 356 GPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLYDER-----PVPLERHLVFARNESEKWDIIARLVKR 429 (830)
T ss_pred ccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEeecCC-----CCChhHeeeeecCchHHHHHHHHHHHH
Confidence 33333 22344445899999999986 6667887777776655432 223344444455555566666666543
Q ss_pred c--------cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCC
Q 017573 233 L--------AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 304 (369)
Q Consensus 233 ~--------~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 304 (369)
- -.+++|||++|+..++.+++.|...|.+...||++++..+|..+...|.++++.++|+|.+++.|+|+|.-
T Consensus 430 E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 430 EFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred HHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchH
Confidence 2 22589999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cEEE---EecCCC-CccchhhhhcccccCC--CceeEEEEeccc
Q 017573 305 SLVI---NYDLPT-QPENYLHRIGRSGRFG--RKGVAINFVTRD 342 (369)
Q Consensus 305 ~~vi---~~~~~~-~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~ 342 (369)
.+++ -.+..| |+.+|.||.||+||.+ ..|.++++..+.
T Consensus 510 QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 510 QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 4442 123333 7899999999999986 458899888765
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.6e-39 Score=314.80 Aligned_cols=321 Identities=20% Similarity=0.296 Sum_probs=231.0
Q ss_pred EEcCCCChhhHHHHHHHHHhhhcc----------CCCccEEEEcCCHHHHHHHHHHHHHhc------------cccCcEE
Q 017573 38 QQAQSGTGKTATFCSGILQQLDYG----------LVQCQALVLAPTRELAQQIEKVMRALG------------DYLGVKV 95 (369)
Q Consensus 38 i~~~tG~GKT~~~~~~~~~~~~~~----------~~~~~~liv~P~~~l~~q~~~~~~~~~------------~~~~~~v 95 (369)
|++|||||||++++++++..+... ..+.++|||+|+++|+.|..++++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998887532 124589999999999999999886421 1246889
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEechhHhhccC----cHHHHHHHHhhCCccC
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDEADEMLSRG----FKDQIYDIFQLLPAKV 170 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~-~~~~~~~~viiDE~H~~~~~~----~~~~~~~~~~~~~~~~ 170 (369)
...+|+....+..+...+.++|+|+||++|..++.+.. ..++++++||+||+|.+.+.. +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777777789999999999988776532 346779999999999998543 2345556666667788
Q ss_pred cEEEEEeeCChhHHHHHHHhcCC-CEEEEecCccccccceeEEEEEccchh-------------------hhHHHH-HHH
Q 017573 171 QVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEE-------------------WKLETL-CDL 229 (369)
Q Consensus 171 ~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l-~~~ 229 (369)
|+|++|||..+ ..+....+... +..+.. ........+. ++....... .....+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999975 44555444332 444432 2222222222 112111100 000111 122
Q ss_pred HHh-ccCCCeEEEeCCHhhHHHHHHHHhhCC---------------------------------CeeEEecCCCCHHHHH
Q 017573 230 YET-LAITQSVIFVNTRRKVDWLTDKMRSRD---------------------------------HTVSATHGDMDQNTRD 275 (369)
Q Consensus 230 ~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 275 (369)
+.. ....++|||||+++.++.++..|++.. ..+..+||+++.++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 235789999999999999999887542 1256789999999999
Q ss_pred HHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC-CCceeEEEEeccccHHHHH---HHH
Q 017573 276 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDERMLF---DIQ 351 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~-~~~~~~~~~~~~~~~~~~~---~~~ 351 (369)
.+++.|++|+.++||||+.++.|||++.+++||.++.|.+..+|.||+||+||. +..+.++++.... .+.++ -++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r-~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTR-RDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcH-HHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 3334555333322 22222 256
Q ss_pred HHhccccccCC
Q 017573 352 KFYNVVIEELP 362 (369)
Q Consensus 352 ~~~~~~~~~~~ 362 (369)
.+++..++++.
T Consensus 397 ~~l~g~iE~~~ 407 (1490)
T PRK09751 397 CMFAGRLENLT 407 (1490)
T ss_pred HHhcCCCCccC
Confidence 66666666544
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.5e-38 Score=304.46 Aligned_cols=283 Identities=23% Similarity=0.299 Sum_probs=216.9
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
+|+ .|+++|+.+++.++.|++++++||||+|||..++..+. .+.. .+.+++|++|+++|+.|+.+.++++....+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~-~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSL-YLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHH-HHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 466 89999999999999999999999999999975544333 3322 2448999999999999999999999888888
Q ss_pred EEEEEECCcch-----HHHH-HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-----------cCcH
Q 017573 94 KVHACVGGTSV-----REDQ-RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-----------RGFK 156 (369)
Q Consensus 94 ~v~~~~~~~~~-----~~~~-~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-----------~~~~ 156 (369)
.+..+.++... .... ....++++|+|+||+.+.+.+. .+....++++|+||||++.. .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 87777665431 1111 2233568999999999988776 35556699999999999885 3453
Q ss_pred -HHHHHHHhhCCc------------------------cCcEEEEEeeCChh-HHHHHHHhcCCCEEEEecCcccccccee
Q 017573 157 -DQIYDIFQLLPA------------------------KVQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDELTLEGIK 210 (369)
Q Consensus 157 -~~~~~~~~~~~~------------------------~~~~i~~saT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (369)
..+..++..++. ..|++++|||.++. ... .++..+..+.+........++.
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~ 307 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIV 307 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCce
Confidence 456666665543 67899999999763 322 2233444444444444556677
Q ss_pred EEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhh---HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 017573 211 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 287 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 287 (369)
+.+.... .+...+..++.... .++||||++.+. ++.+++.|+..|+++..+||++ .+.++.|++|+++
T Consensus 308 ~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 308 DSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred EEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 7776554 35566777776654 589999999777 9999999999999999999998 2345999999999
Q ss_pred EEEE----ecCCcCCCCCCC-CcEEEEecCCC
Q 017573 288 VLIT----TDLLARGIDVQQ-VSLVINYDLPT 314 (369)
Q Consensus 288 vli~----t~~~~~G~d~~~-~~~vi~~~~~~ 314 (369)
|||+ |+.+++|+|+|+ ++.||+++.|.
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 588999999999 89999988775
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=299.67 Aligned_cols=334 Identities=23% Similarity=0.302 Sum_probs=249.0
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 81 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 81 (369)
+++.+..-++..++.++.+.|+.++.....+ +|+++++|||+|||++++++++..+.++ +.+++|+||+++|+.+..
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKY 93 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHH
Confidence 6778888888899999999999999887765 9999999999999999999999999876 238999999999999999
Q ss_pred HHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHH
Q 017573 82 KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYD 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~ 161 (369)
++|++ ...+|++|...+|+...... ...+++|+|+|||+|....++.......+++||+||+|.+.+......+..
T Consensus 94 ~~~~~-~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFSR-LEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhhh-HHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh
Confidence 99993 34569999999998874442 134689999999999988888777677799999999999887644444444
Q ss_pred HHhh---CCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcc-ccccceeEEEEEcc-ch-----hhhHHHHHHHHH
Q 017573 162 IFQL---LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFYVNVE-KE-----EWKLETLCDLYE 231 (369)
Q Consensus 162 ~~~~---~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~ 231 (369)
+... .....+++++|||.+ +..+...++-.++......... .........+.... .. ......+.....
T Consensus 170 iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~ 248 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLE 248 (766)
T ss_pred HHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHH
Confidence 4333 334479999999996 6667776666665421111111 11111111111111 11 111222333333
Q ss_pred hc-cCCCeEEEeCCHhhHHHHHHHHhhC-------------------------------------CCeeEEecCCCCHHH
Q 017573 232 TL-AITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQNT 273 (369)
Q Consensus 232 ~~-~~~k~lv~~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~ 273 (369)
.. .++.++|||++++.+...++.+... -..+++.|++++.++
T Consensus 249 ~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~ 328 (766)
T COG1204 249 SLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRED 328 (766)
T ss_pred HHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHH
Confidence 33 4569999999999999888888731 123788999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec-----CCCCccchhhhhcccccCCC--ceeEEEEeccc
Q 017573 274 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGR--KGVAINFVTRD 342 (369)
Q Consensus 274 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~~~~~~~Q~~GR~~R~~~--~~~~~~~~~~~ 342 (369)
|..+.+.|+.|.++||++|+.+..|+|.|.-++||- ++ .+.+..++.|++||+||.|- .|.++++....
T Consensus 329 R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 329 RQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred HHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 999999999999999999999999999996666652 33 23456789999999999874 47777777444
Q ss_pred c
Q 017573 343 D 343 (369)
Q Consensus 343 ~ 343 (369)
+
T Consensus 409 ~ 409 (766)
T COG1204 409 D 409 (766)
T ss_pred c
Confidence 3
No 58
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.5e-39 Score=292.82 Aligned_cols=310 Identities=15% Similarity=0.132 Sum_probs=218.2
Q ss_pred CCCcHhhhhhhhccccC---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 17 EKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
..|||||++++..+..+ ++.++++|||+|||++++.++... . .++|||||+..|+.||.+++.++......
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~-----k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-K-----KSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-C-----CCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 57999999999998743 478999999999999987665532 1 27999999999999999999998654455
Q ss_pred EEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc--------CCCCCCCccEEEEechhHhhccCcHHHHHHHHhh
Q 017573 94 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 165 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~--------~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~ 165 (369)
.+....++.... ......|+|+|++++.....+ ..+....|+++|+||||++.+.. ...+...
T Consensus 328 ~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~ 398 (732)
T TIGR00603 328 QICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTI 398 (732)
T ss_pred eEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHh
Confidence 666666654321 123468999999988532211 11233458999999999985443 3345555
Q ss_pred CCccCcEEEEEeeCChhHHH--HHHHhcCCCEEEEecCccc------cccceeEEEEEcc--------------------
Q 017573 166 LPAKVQVGVFSATMPPEALE--ITRKFMNKPVRILVKRDEL------TLEGIKQFYVNVE-------------------- 217 (369)
Q Consensus 166 ~~~~~~~i~~saT~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------------------- 217 (369)
+.. ...+++||||..+... .+..+++. ..+.....+. .+......++...
T Consensus 399 l~a-~~RLGLTATP~ReD~~~~~L~~LiGP-~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~ 476 (732)
T TIGR00603 399 VQA-HCKLGLTATLVREDDKITDLNFLIGP-KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYV 476 (732)
T ss_pred cCc-CcEEEEeecCcccCCchhhhhhhcCC-eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhh
Confidence 543 3479999999643221 22223332 2222211111 1111111111111
Q ss_pred chhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEecC
Q 017573 218 KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDL 294 (369)
Q Consensus 218 ~~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~ 294 (369)
....+...+..++..+ .+.++||||.+...+..+++.|. +..++|+++..+|.++++.|++| .+++||+|++
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkV 551 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKV 551 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecc
Confidence 1122445555566544 66799999999999999998872 46789999999999999999875 7899999999
Q ss_pred CcCCCCCCCCcEEEEecCC-CCccchhhhhcccccCCCceeE-------EEEeccccHHHHH
Q 017573 295 LARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVA-------INFVTRDDERMLF 348 (369)
Q Consensus 295 ~~~G~d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~-------~~~~~~~~~~~~~ 348 (369)
+.+|+|+|++++||+++.+ .|...|.||+||++|.+..|.+ |.+++.++.++..
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 9999999999999999987 5999999999999999766554 8888887666553
No 59
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=7e-39 Score=287.09 Aligned_cols=327 Identities=22% Similarity=0.273 Sum_probs=230.6
Q ss_pred CCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 16 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
...+|+||.+++...+ ++|++|++|||+|||++|...+.+++...+. .|+++++|++-|+.|+...+..++.. ..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 3579999999999999 9999999999999999999999988877655 49999999999999999888887654 455
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCC-CCccEEEEechhHhhccCcHHHHH-HHHhhCCccCcEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP-DYIKMFVLDEADEMLSRGFKDQIY-DIFQLLPAKVQVG 173 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~-~~~~~viiDE~H~~~~~~~~~~~~-~~~~~~~~~~~~i 173 (369)
....++.........+....+|+|+||+.+...+.+..... +.|.++|+||||+......+..+. ..+..-....|++
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 55555544333333344557999999999999888876665 889999999999987554444444 4444444455999
Q ss_pred EEEeeCChhHHHHHH---HhcCC----------------------CEEE------------------------------E
Q 017573 174 VFSATMPPEALEITR---KFMNK----------------------PVRI------------------------------L 198 (369)
Q Consensus 174 ~~saT~~~~~~~~~~---~~~~~----------------------~~~~------------------------------~ 198 (369)
++||||+.+...... .++-. +..+ .
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 999999854433211 11100 0000 0
Q ss_pred ecC----------cccccc--------------------------cee--------------------------------
Q 017573 199 VKR----------DELTLE--------------------------GIK-------------------------------- 210 (369)
Q Consensus 199 ~~~----------~~~~~~--------------------------~~~-------------------------------- 210 (369)
... ...... .++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 000 000000 000
Q ss_pred ---------EEEEEccchhhhHHHHHHHHH----hccCCCeEEEeCCHhhHHHHHHHHhhC---CCeeEEec--------
Q 017573 211 ---------QFYVNVEKEEWKLETLCDLYE----TLAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATH-------- 266 (369)
Q Consensus 211 ---------~~~~~~~~~~~~~~~l~~~~~----~~~~~k~lv~~~~~~~~~~~~~~l~~~---~~~~~~~~-------- 266 (369)
+.....+....+++.+.+++. ..+..++|||+..++.|..+.+.|.+. +++...+-
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~ 455 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQS 455 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccc
Confidence 000000000013333433332 234568999999999999999999832 22222222
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 017573 267 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 267 ~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
.+|++.++.+++++|++|+++|||||+++++|+|++.|+.||.|+...|+...+||.|| ||. +.|.++++.+......
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIE 533 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHH
Confidence 36889999999999999999999999999999999999999999999999999999999 997 5688888888554444
Q ss_pred HH
Q 017573 347 LF 348 (369)
Q Consensus 347 ~~ 348 (369)
.+
T Consensus 534 ~E 535 (746)
T KOG0354|consen 534 FE 535 (746)
T ss_pred HH
Confidence 43
No 60
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.6e-38 Score=300.84 Aligned_cols=330 Identities=20% Similarity=0.251 Sum_probs=241.2
Q ss_pred HHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 11 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 11 l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
+-.-+..++|+||++++..+.++ ++++++|||+|||.++++.+...+. ..+.++||++|+++|+.||.+.++++...
T Consensus 8 ~~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 8 LIKPNTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred ccCcCcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 33335568999999999888776 9999999999999998888887763 23348999999999999999999988654
Q ss_pred cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccC
Q 017573 91 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 170 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
.+..+..++|+........ ...+++|+|+||+.+...+.........++++|+||||++.+......+...+.......
T Consensus 85 ~~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4557777888776554333 344579999999999888877777788899999999999875543444444444444567
Q ss_pred cEEEEEeeCChhHHH---HHHHhcCCCEEEEecCcc--------------------------------------------
Q 017573 171 QVGVFSATMPPEALE---ITRKFMNKPVRILVKRDE-------------------------------------------- 203 (369)
Q Consensus 171 ~~i~~saT~~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------------------------- 203 (369)
+++++||||..+... ....+....+.+......
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 799999999543221 122211111100000000
Q ss_pred cc--cc-----------------ceeEEE---------------------------------------------------
Q 017573 204 LT--LE-----------------GIKQFY--------------------------------------------------- 213 (369)
Q Consensus 204 ~~--~~-----------------~~~~~~--------------------------------------------------- 213 (369)
.. .. .+....
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 000000
Q ss_pred ----------------EEccchhhhHHHHHHHHHh----ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCC-----
Q 017573 214 ----------------VNVEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD----- 268 (369)
Q Consensus 214 ----------------~~~~~~~~~~~~l~~~~~~----~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~----- 268 (369)
........+.+.+.+++.. ..+.++||||++.+.+..+.+.|...+..+..++|.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000112234444455533 456799999999999999999999989988888886
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 269 ---MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 269 ---~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
++..+|.++++.|++|+.++||+|+++++|+|+|.+++||++++++++..++||+||+||.+. |.+++++..++.+
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~e 482 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRD 482 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChH
Confidence 888999999999999999999999999999999999999999999999999999999999865 8888888766443
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.6e-38 Score=297.00 Aligned_cols=349 Identities=23% Similarity=0.337 Sum_probs=275.0
Q ss_pred CHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHH
Q 017573 4 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKV 83 (369)
Q Consensus 4 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~ 83 (369)
+..+..+|.+.|+..||+||.+|+..+.+|++++|..|||||||.++++++++.+...... ++|+|.|+++|++++.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3456778889999999999999999999999999999999999999999999999887765 899999999999999999
Q ss_pred HHHhccccC--cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC----CCCCCccEEEEechhHhhccC---
Q 017573 84 MRALGDYLG--VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS----LRPDYIKMFVLDEADEMLSRG--- 154 (369)
Q Consensus 84 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~----~~~~~~~~viiDE~H~~~~~~--- 154 (369)
++++....+ ++....+|+.+......+..++++|++|||+++...+.++. ...+++++||+||+|.+....
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhH
Confidence 999988877 78888889888777778888999999999999987554432 334568999999999875432
Q ss_pred ---cHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccc--------hhhhH
Q 017573 155 ---FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK--------EEWKL 223 (369)
Q Consensus 155 ---~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 223 (369)
..+.+..++...++..|+++.|||.. +..+....+.+......+..+.. +.....+....+. .....
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g~-~~~~~~~~~~~p~~~~~~~~~r~s~~ 292 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDGS-PRGLRYFVRREPPIRELAESIRRSAL 292 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCCC-CCCceEEEEeCCcchhhhhhcccchH
Confidence 22555566666677899999999996 55567777777766664333322 3333333333330 11233
Q ss_pred HHHHHHHHhc--cCCCeEEEeCCHhhHHHHH----HHHhhCC----CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 017573 224 ETLCDLYETL--AITQSVIFVNTRRKVDWLT----DKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 293 (369)
Q Consensus 224 ~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 293 (369)
..+..+.... .+-++|+|+.+++.++.+. +.+...+ ..+..+++.+..++|.++...|+.|+..++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~ 372 (851)
T COG1205 293 AELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN 372 (851)
T ss_pred HHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch
Confidence 4444444332 3459999999999999886 4444445 5789999999999999999999999999999999
Q ss_pred CCcCCCCCCCCcEEEEecCCC-CccchhhhhcccccCCCceeEEEEeccc--cHHHHHHHHHHhc
Q 017573 294 LLARGIDVQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD--DERMLFDIQKFYN 355 (369)
Q Consensus 294 ~~~~G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 355 (369)
+++-|+|+.+++.||..+.|. +..++.|+.||+||.++.+..+.+.... |..+...-+.++.
T Consensus 373 AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 373 ALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999 8999999999999998777666665532 4444444455554
No 62
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-40 Score=253.07 Aligned_cols=327 Identities=42% Similarity=0.721 Sum_probs=288.6
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
|.|++.+++.+.||++|+..|.+.++...-|-+++++|..|.|||.++.++.++++..-.....++++|.+++|+-|..+
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ 128 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISK 128 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999877777789999999999999999
Q ss_pred HHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHHHH
Q 017573 83 VMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIY 160 (369)
Q Consensus 83 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~~~ 160 (369)
+..+|.+.. +.++.+..|+.....+...+++-++|+|+||.++..+.++..+++.++...|+|||+.+.. ....+...
T Consensus 129 ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQ 208 (387)
T KOG0329|consen 129 EYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQ 208 (387)
T ss_pred HHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHH
Confidence 988887766 6789999999998888888888889999999999999999999999999999999998763 45678899
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcc-ccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
.+.+..|...|+..+|||.+.++.-...+++.+|..+.++.+. ....++.++|..+... .+...+.+++....-..++
T Consensus 209 Eifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~-eKNrkl~dLLd~LeFNQVv 287 (387)
T KOG0329|consen 209 EIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN-EKNRKLNDLLDVLEFNQVV 287 (387)
T ss_pred HHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh-hhhhhhhhhhhhhhhccee
Confidence 9999999999999999999999999999999999887766543 4566777777776653 4677778888877778999
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
||+.+..... | ..+ +++|+..++|+|+.+++.++.++.|.++.+|
T Consensus 288 IFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtY 332 (387)
T KOG0329|consen 288 IFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTY 332 (387)
T ss_pred Eeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHH
Confidence 9998875500 2 223 8899999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEecc-ccHHHHHHHHHHhccccccCCcch
Q 017573 320 LHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSNV 365 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
.++.||+||.|.+|.++.+++. .|.+.+...++.+...+.++|+++
T Consensus 333 lHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 333 LHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred HHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 9999999999999999999885 577888889999999999988874
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-37 Score=286.09 Aligned_cols=314 Identities=18% Similarity=0.204 Sum_probs=224.3
Q ss_pred HhhhhhhhccccCCcEEEEcCCCChhhHHH---------HHHHHHhhh---ccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 21 AIQQRGIVPFCKGLDVIQQAQSGTGKTATF---------CSGILQQLD---YGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 21 ~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~---------~~~~~~~~~---~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
..|+++++.+.++++++++|+||+|||.+. +++.+..+. ......++++++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999863 122333322 12233489999999999999999988755
Q ss_pred cc---cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhh
Q 017573 89 DY---LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 165 (369)
Q Consensus 89 ~~---~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~ 165 (369)
.. .+..+....|+... .......+..+++++|+.... ..+++++++|+||+|+....+ ..+..++..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHHHH
Confidence 43 35667777887763 211222235689999964211 245668999999999975443 444444444
Q ss_pred CC-ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccc---------hhhhHHHHHHHHHh--c
Q 017573 166 LP-AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------EEWKLETLCDLYET--L 233 (369)
Q Consensus 166 ~~-~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~--~ 233 (369)
.. ...|+++||||++.+...+ ..++.++..+.... .....+.+.+..... ...+...+..+... .
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~ 393 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPP 393 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcc
Confidence 33 3358999999998776555 57777776666542 223445555543221 11111222222222 2
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHH-hcCCCcEEEEecCCcCCCCCCCCcEEEEe
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREF-RSGSSRVLITTDLLARGIDVQQVSLVINY 310 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 310 (369)
..+++|||+++.++++.+++.|++. +..+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++||..
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 3468999999999999999999887 68999999999875 4566676 68999999999999999999999999999
Q ss_pred c---CCC---------CccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 311 D---LPT---------QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 311 ~---~~~---------~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
+ .|. |..++.||.||+||. ++|.|+.++++.+...+..+
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 8 443 677899999999999 88999999998765444333
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.3e-37 Score=272.60 Aligned_cols=301 Identities=16% Similarity=0.177 Sum_probs=203.6
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHH--------
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE-------- 106 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 106 (369)
++++.+|||+|||.+++++++..+.... ..+++|++|+++|+.|+.+.+.+++.. .+...+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-ADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-CCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 4789999999999999999998765433 348999999999999999999987532 2333333222100
Q ss_pred ----HHHHH-c-----cCCcEEEeccHHHHHHHHcCCCC------CCCccEEEEechhHhhccCcHHHHHHHHhhCC-cc
Q 017573 107 ----DQRIL-Q-----AGVHVVVGTPGRVFDMLRRQSLR------PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AK 169 (369)
Q Consensus 107 ----~~~~~-~-----~~~~iiv~t~~~l~~~~~~~~~~------~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~ 169 (369)
..... . ...+|+++|++++...+...... .-..+++|+||+|.+....+.. +..++..+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 00000 0 13579999999998766552110 0113789999999987654322 444444443 46
Q ss_pred CcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEE-EEccchhhhHHHHHHHHHhc-cCCCeEEEeCCHhh
Q 017573 170 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY-VNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRK 247 (369)
Q Consensus 170 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~ 247 (369)
.|++++|||++....+........+........... ....+.+ ........+...+..++... .++++||||++++.
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 789999999986655555444322111111100000 0011111 11112223444555555443 45799999999999
Q ss_pred HHHHHHHHhhCCC--eeEEecCCCCHHHHHH----HHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhh
Q 017573 248 VDWLTDKMRSRDH--TVSATHGDMDQNTRDI----IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321 (369)
Q Consensus 248 ~~~~~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q 321 (369)
++.+++.|++.+. .+..+||++++.+|.+ +++.|++|+.++||||+++++|+|++ ++.+|....| ...|.|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999988765 5999999999999876 48899999999999999999999996 7777766544 679999
Q ss_pred hhcccccCCCc----eeEEEEeccccH
Q 017573 322 RIGRSGRFGRK----GVAINFVTRDDE 344 (369)
Q Consensus 322 ~~GR~~R~~~~----~~~~~~~~~~~~ 344 (369)
|+||+||.|+. |.++++....+.
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecCCC
Confidence 99999998754 378888775543
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.6e-36 Score=284.94 Aligned_cols=306 Identities=16% Similarity=0.265 Sum_probs=230.6
Q ss_pred hhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH-hccccCcEEEEEEC
Q 017573 22 IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVG 100 (369)
Q Consensus 22 ~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~v~~~~~ 100 (369)
+-.+++..+..+++++++|+||||||.++.+++++.... +++++++.|++.++.|.++.+.+ +....+..+.+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 445667777788999999999999999999998877532 33899999999999999998864 44444566665554
Q ss_pred CcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhH-hhccCcH-HHHHHHHhhCCccCcEEEEEee
Q 017573 101 GTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFK-DQIYDIFQLLPAKVQVGVFSAT 178 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~~~-~~~~~~~~~~~~~~~~i~~saT 178 (369)
... ....+.+|+|+|+..|.+.+... ..++++++||+||+|+ ..+..+. ..+..+...+++..++++||||
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 432 12345789999999999888764 5678899999999995 4444432 2334455667778999999999
Q ss_pred CChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhH----HHHHHHHHhccCCCeEEEeCCHhhHHHHHHH
Q 017573 179 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDK 254 (369)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~ 254 (369)
++... ...++.+...+...... ..+..+|.......... ..+..++.. ..+++|||+++..+++.+++.
T Consensus 156 l~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 156 LDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 97543 34556544334333221 12445554443322221 233333333 357899999999999999999
Q ss_pred Hhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCC----------------
Q 017573 255 MRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ---------------- 315 (369)
Q Consensus 255 l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~---------------- 315 (369)
|++ .+..+..+||+++.++|.++++.|.+|..+|+|+|+++++|+|+|++++||..+.+..
T Consensus 229 L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 308 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVR 308 (819)
T ss_pred HHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEE
Confidence 987 3688999999999999999999999999999999999999999999999999987642
Q ss_pred --ccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 316 --PENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 316 --~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
..++.||.||+||. ++|.||.+++..+..
T Consensus 309 iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 309 ISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 23479999999999 899999999876544
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-36 Score=286.46 Aligned_cols=307 Identities=17% Similarity=0.283 Sum_probs=230.7
Q ss_pred HhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH-hccccCcEEEEEE
Q 017573 21 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACV 99 (369)
Q Consensus 21 ~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~v~~~~ 99 (369)
.+-.+++..+.++++++++||||||||+++.+++++.... ..+++++.|++.++.|.++.+.+ +....+..+.+..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 3445677777888999999999999999998888875432 23899999999999999998864 4444566777666
Q ss_pred CCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHh-hccC-cHHHHHHHHhhCCccCcEEEEEe
Q 017573 100 GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRG-FKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 100 ~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~-~~~~-~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
++... ......|+|+|+..+.+++... ..++++++||+||+|+. .+.. ....+..+.+.+++..|+++|||
T Consensus 85 r~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 85 RAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 65431 1234689999999999888764 56788999999999973 2222 12333455566778889999999
Q ss_pred eCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHH----HHHHHHHhccCCCeEEEeCCHhhHHHHHH
Q 017573 178 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLE----TLCDLYETLAITQSVIFVNTRRKVDWLTD 253 (369)
Q Consensus 178 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~k~lv~~~~~~~~~~~~~ 253 (369)
|++.+. ...++.....+...... ..+...|..........+ .+..++.. ..+.+|||+++..+++.+++
T Consensus 158 Tl~~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 158 TLDNDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CCCHHH---HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 997542 34555544334332221 234555554433222222 23333332 35799999999999999999
Q ss_pred HHhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCC---------------
Q 017573 254 KMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ--------------- 315 (369)
Q Consensus 254 ~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~--------------- 315 (369)
.|+. .+..+..+||+++.++|.++++.|.+|..+|+|+|+++++|+|+|++++||..+.+..
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 5678999999999999999999999999999999999999999999999999886542
Q ss_pred ---ccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 316 ---PENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 316 ---~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
..++.||.||+||. ++|.||.+++..+..
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 34799999999999 799999999977554
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.8e-36 Score=299.92 Aligned_cols=324 Identities=19% Similarity=0.190 Sum_probs=241.8
Q ss_pred HHHHHHHh-CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH
Q 017573 6 NLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 6 ~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
++...+++ +|| +|++.|+++++.+++|+++++.||||+|||++++.+++..... +.+++|++|+++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~---g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK---GKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc---CCeEEEEECHHHHHHHHHHHH
Confidence 34555655 799 7999999999999999999999999999999665555443322 338999999999999999999
Q ss_pred HHhcccc--CcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhcc-----
Q 017573 85 RALGDYL--GVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR----- 153 (369)
Q Consensus 85 ~~~~~~~--~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~----- 153 (369)
+.+.... +..+..++|+........ ...++++|+|+||+.+...+... ...+++++|+||||.+..+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccc
Confidence 9987765 456677888877555432 23346899999999888766542 2256899999999998752
Q ss_pred ------CcHHHHHH----HHh----------------------hCCccCc-EEEEEeeCChhHHHHHHHhcCCCEEEEec
Q 017573 154 ------GFKDQIYD----IFQ----------------------LLPAKVQ-VGVFSATMPPEALEITRKFMNKPVRILVK 200 (369)
Q Consensus 154 ------~~~~~~~~----~~~----------------------~~~~~~~-~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 200 (369)
+|...+.. ++. .+++..+ .+.+|||.++.. ....++..+..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEec
Confidence 55555542 221 2344455 566899997531 122344566666666
Q ss_pred CccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhh---HHHHHHHHhhCCCeeEEecCCCCHHHHHHH
Q 017573 201 RDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDII 277 (369)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 277 (369)
........+.+.+....... + ..+..++... +..+||||++.+. ++.+++.|...|+++..+|++ |...
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHH
Confidence 55555667777776554332 2 4566777665 4689999998775 589999999999999999995 8899
Q ss_pred HHHHhcCCCcEEEEec----CCcCCCCCCC-CcEEEEecCCC---Cccchhhhh-------------cccccCCCceeEE
Q 017573 278 MREFRSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLPT---QPENYLHRI-------------GRSGRFGRKGVAI 336 (369)
Q Consensus 278 ~~~f~~~~~~vli~t~----~~~~G~d~~~-~~~vi~~~~~~---~~~~~~Q~~-------------GR~~R~~~~~~~~ 336 (369)
++.|.+|+.+|||+|. .+.+|+|+|+ ++.||+++.|. +...+.|.. ||++|.|..+.++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 9999999999999994 7889999998 99999999998 766666655 9999999887776
Q ss_pred EEeccccHH
Q 017573 337 NFVTRDDER 345 (369)
Q Consensus 337 ~~~~~~~~~ 345 (369)
..+...+..
T Consensus 451 ~~~~~~~~~ 459 (1638)
T PRK14701 451 LDVFPEDVE 459 (1638)
T ss_pred HHhHHHHHH
Confidence 444433333
No 68
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.2e-35 Score=259.95 Aligned_cols=320 Identities=20% Similarity=0.260 Sum_probs=250.4
Q ss_pred HHHHHHhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 7 LLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 7 i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+.+.+...+| +||..|++++..+... -+-++++..|||||.+++++++..+..+. ++...+||.-|++|.
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH 327 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQH 327 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHH
Confidence 3444577898 9999999999998864 45799999999999999999999988877 899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
++.+.++....+++|..++|+.+....... ..+..+++|+|+ .+.+......++.++|+||=|++.-.
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRFGV~--- 399 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRFGVH--- 399 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccccHH---
Confidence 999999999999999999999887666543 346799999994 45555667777899999999997422
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCC
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (369)
+-..+.++-...+.++.|||||.|....+ ..+.+-..-..+.-+.....+...+..........+.+..-+. .+.
T Consensus 400 -QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~--~Gr 474 (677)
T COG1200 400 -QRLALREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA--KGR 474 (677)
T ss_pred -HHHHHHHhCCCCCcEEEEeCCCchHHHHH--HHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH--cCC
Confidence 22233333222678999999998765433 3444433333333444445666666666555545555544444 456
Q ss_pred CeEEEeCCHhhH--------HHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcE
Q 017573 237 QSVIFVNTRRKV--------DWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 306 (369)
Q Consensus 237 k~lv~~~~~~~~--------~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 306 (369)
++.+.|+-+++. ...++.|+.. +.++..+||+|+.++++++++.|++|+.+|||||..++.|+|+|+++.
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 888999877654 4556666644 456999999999999999999999999999999999999999999999
Q ss_pred EEEecCC-CCccchhhhhcccccCCCceeEEEEecccc
Q 017573 307 VINYDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 307 vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
+++.+.- ...+++=|.-||+||.+..+.|++++.+..
T Consensus 555 MVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 555 MVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9987753 456788999999999999999999999876
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.8e-35 Score=270.32 Aligned_cols=319 Identities=15% Similarity=0.145 Sum_probs=227.3
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.++|+|.+++..+.-+++.+++++||+|||++++++++.....+. .++|++|++.|+.|+.+++..+...+|+.+..
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~---~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~ 144 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK---GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSL 144 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC---ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 456677777766666666899999999999999998765554443 79999999999999999999999999999988
Q ss_pred EECCcc---hHHHHHHHccCCcEEEeccHHH-HHHHHc------CCCCCCCccEEEEechhHhhccC-------------
Q 017573 98 CVGGTS---VREDQRILQAGVHVVVGTPGRV-FDMLRR------QSLRPDYIKMFVLDEADEMLSRG------------- 154 (369)
Q Consensus 98 ~~~~~~---~~~~~~~~~~~~~iiv~t~~~l-~~~~~~------~~~~~~~~~~viiDE~H~~~~~~------------- 154 (369)
..++.. .....+.....++|+++||..| +..+.. +......+.++|+||+|.+.-..
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~ 224 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRV 224 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCcc
Confidence 776521 1111222335689999999999 454433 22335668999999999874210
Q ss_pred ---cHHHHHHHHhhCCc---------------------------------------------------------------
Q 017573 155 ---FKDQIYDIFQLLPA--------------------------------------------------------------- 168 (369)
Q Consensus 155 ---~~~~~~~~~~~~~~--------------------------------------------------------------- 168 (369)
.......+...+..
T Consensus 225 ~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~ 304 (762)
T TIGR03714 225 QSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVT 304 (762)
T ss_pred chHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 00111111111000
Q ss_pred ------------------------------------------------------cCcEEEEEeeCChhHHHHHHHhcCCC
Q 017573 169 ------------------------------------------------------KVQVGVFSATMPPEALEITRKFMNKP 194 (369)
Q Consensus 169 ------------------------------------------------------~~~~i~~saT~~~~~~~~~~~~~~~~ 194 (369)
-.++.+||+|......++. ..++-.
T Consensus 305 ~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~iY~l~ 383 (762)
T TIGR03714 305 NGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-ETYSLS 383 (762)
T ss_pred CCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-HHhCCC
Confidence 0467788999765554443 444444
Q ss_pred EEEEecCccccccceeEEEEEccchhhhHHHHHHHHHh--ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHH
Q 017573 195 VRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 272 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 272 (369)
+.......+.........++ .....+...+.+.+.. ..+.++||||++++.++.+.+.|.+.++++..+|++++..
T Consensus 384 v~~IPt~kp~~r~d~~d~i~--~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~ 461 (762)
T TIGR03714 384 VVKIPTNKPIIRIDYPDKIY--ATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAK 461 (762)
T ss_pred EEEcCCCCCeeeeeCCCeEE--ECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHH
Confidence 43333222222111111111 2234466666666644 3567999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCcCCCCCC---------CCcEEEEecCCCCccchhhhhcccccCCCceeEEEEecccc
Q 017573 273 TRDIIMREFRSGSSRVLITTDLLARGIDVQ---------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 273 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
++..+.+.+..| .|+|||+++++|+|+| ++++|+.+++|....+ .|+.||+||.|++|.++.|++..|
T Consensus 462 E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 462 EAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred HHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 887777766665 6999999999999999 8999999998877656 999999999999999999998754
Q ss_pred HH
Q 017573 344 ER 345 (369)
Q Consensus 344 ~~ 345 (369)
.-
T Consensus 539 ~l 540 (762)
T TIGR03714 539 DL 540 (762)
T ss_pred hh
Confidence 43
No 70
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-36 Score=268.24 Aligned_cols=293 Identities=19% Similarity=0.245 Sum_probs=205.7
Q ss_pred CCCcHhhhhhhhcccc----CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..||++|+++++++.. +++.++++|||+|||.+++..+..... ++|||||+..|+.||.+.+.++....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 4699999999999998 899999999999999988666554321 59999999999999998777765331
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcE
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 172 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
..+....++.. ... . ..|.|+|++++........+....+++||+||||++.+..+..... .+.....+
T Consensus 108 ~~~g~~~~~~~-~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~----~~~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEK-ELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILE----LLSAAYPR 176 (442)
T ss_pred cccceecCcee-ccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHH----hhhcccce
Confidence 12333333332 111 1 3699999999987532222334468999999999987655443333 33222228
Q ss_pred EEEEeeCChhHHH---HHHHhcCCCEEEEecCcc------ccccceeEEEEEcc--------------------------
Q 017573 173 GVFSATMPPEALE---ITRKFMNKPVRILVKRDE------LTLEGIKQFYVNVE-------------------------- 217 (369)
Q Consensus 173 i~~saT~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------------------------- 217 (369)
+++||||...... .....++ +..+.....+ ..+...........
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRA 255 (442)
T ss_pred eeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhH
Confidence 9999998643311 1111111 2222221110 00111111111000
Q ss_pred ---------chhhhHHHHHHHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 017573 218 ---------KEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 287 (369)
Q Consensus 218 ---------~~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 287 (369)
....+...+..++..+ ...++++|+.+..+++.++..+...+. +..++++.+..+|..+++.|+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~ 334 (442)
T COG1061 256 ENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK 334 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 0111333344444444 367999999999999999999988777 88999999999999999999999999
Q ss_pred EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC
Q 017573 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 288 vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
+|+++.++.+|+|+|+++++|+..+..|...|.|++||+.|.
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999993
No 71
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.2e-34 Score=281.67 Aligned_cols=290 Identities=21% Similarity=0.262 Sum_probs=211.1
Q ss_pred HHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 7 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 7 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
+.+.+.+.....|+++|+.+++.++.|++++++||||+|||..++ ++...+.. .+++++|++|+++|+.|+.+.+.+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l-~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGL-AMSLFLAK--KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 344444444458999999999999999999999999999997544 33333332 234899999999999999999999
Q ss_pred hccccCcEEE---EEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-------
Q 017573 87 LGDYLGVKVH---ACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS------- 152 (369)
Q Consensus 87 ~~~~~~~~v~---~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~------- 152 (369)
+....++.+. ..+|+.+...... ...++++|+|+||+.+...+.... . .++++|+||||++.+
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHH
Confidence 9876665543 4567766544322 233468999999999988776522 2 689999999999986
Q ss_pred ----cCcHHH-HHHH----------------------HhhCCccCc--EEEEEeeC-ChhHHHHHHHhcCCCEEEEecCc
Q 017573 153 ----RGFKDQ-IYDI----------------------FQLLPAKVQ--VGVFSATM-PPEALEITRKFMNKPVRILVKRD 202 (369)
Q Consensus 153 ----~~~~~~-~~~~----------------------~~~~~~~~~--~i~~saT~-~~~~~~~~~~~~~~~~~~~~~~~ 202 (369)
.+|... +..+ ++.++...| ++++|||+ +.... ..++.....+.+...
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccceEecCc
Confidence 344432 3332 223344444 56689994 33322 133444444555444
Q ss_pred cccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCH---hhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHH
Q 017573 203 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR---RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 279 (369)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 279 (369)
.....++.+.+..... ....+.+++... +.++||||++. +.++.+++.|.+.|+++..+||+++ .+.++
T Consensus 298 ~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~ 369 (1171)
T TIGR01054 298 SDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYE 369 (1171)
T ss_pred cccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHH
Confidence 4455667766664433 234566666654 36899999998 9999999999999999999999986 36899
Q ss_pred HHhcCCCcEEEEe----cCCcCCCCCCC-CcEEEEecCC
Q 017573 280 EFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLP 313 (369)
Q Consensus 280 ~f~~~~~~vli~t----~~~~~G~d~~~-~~~vi~~~~~ 313 (369)
.|++|+++|||+| +.+++|+|+|+ +++||+++.|
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 9999999999995 89999999999 8999986654
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6e-35 Score=254.05 Aligned_cols=289 Identities=15% Similarity=0.225 Sum_probs=198.1
Q ss_pred hhhhhhhccccCCc--EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc----cCcEE
Q 017573 22 IQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY----LGVKV 95 (369)
Q Consensus 22 ~Q~~~~~~~~~~~~--~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~----~~~~v 95 (369)
+|.++++++.++++ +++.+|||+|||.+++++++.. ..++++++|+++|++|+.+.+.++... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998864 7899999999999998887742 127899999999999999999887643 24556
Q ss_pred EEEECCcchHH--H------------------HHHHccCCcEEEeccHHHHHHHHcCCCC--------CCCccEEEEech
Q 017573 96 HACVGGTSVRE--D------------------QRILQAGVHVVVGTPGRVFDMLRRQSLR--------PDYIKMFVLDEA 147 (369)
Q Consensus 96 ~~~~~~~~~~~--~------------------~~~~~~~~~iiv~t~~~l~~~~~~~~~~--------~~~~~~viiDE~ 147 (369)
..+.|....+. . .......+.|++|||+.|..++..+... ...++++|+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 66666532220 0 0111235789999999998766543211 356899999999
Q ss_pred hHhhccCcH-----HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHh--cCCCEEEEecC-----c------cc-----
Q 017573 148 DEMLSRGFK-----DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF--MNKPVRILVKR-----D------EL----- 204 (369)
Q Consensus 148 H~~~~~~~~-----~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~-----~------~~----- 204 (369)
|.+..+... -....+........+++++|||+++.....+... +..+....... + ..
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 998643321 1222333333445789999999998777666654 33333221111 0 00
Q ss_pred --cccceeEEEEEccchhhhHHHHHH-------HHHhccCCCeEEEeCCHhhHHHHHHHHhhCC--CeeEEecCCCCHHH
Q 017573 205 --TLEGIKQFYVNVEKEEWKLETLCD-------LYETLAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNT 273 (369)
Q Consensus 205 --~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 273 (369)
..+.+...+.. . ...+...+.. .++..+++++||||++.+.++.+++.|++.+ ..+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~-~-~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP-A-PDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe-C-CchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 00233333333 1 1122222222 2222356799999999999999999999864 47888999999998
Q ss_pred HHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccc
Q 017573 274 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 327 (369)
Q Consensus 274 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~ 327 (369)
|.+. ++.++||||+++++|+|+|.. .|| ++ |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8654 367899999999999999976 555 44 788999999999986
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4e-35 Score=265.05 Aligned_cols=319 Identities=20% Similarity=0.199 Sum_probs=238.2
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
.|. .|++.|..++..+.+|+ +.++.||+|||+++.++++.....+. .++|++|++.|+.|.++++.+++..+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~---~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGL---PVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCC---eEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 354 89999999999999998 99999999999999999997765543 8999999999999999999999999999
Q ss_pred EEEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCCCC-------------------------CCCccEEEEech
Q 017573 94 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSLR-------------------------PDYIKMFVLDEA 147 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~~~-------------------------~~~~~~viiDE~ 147 (369)
++..+.++...... .....++|+++|...| +.+++.+-.. ...++++|+||+
T Consensus 174 sv~~i~gg~~~~~r--~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPDER--RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHHHH--HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 99999998764432 2345689999999888 4444433211 234789999999
Q ss_pred hHhh-cc-----------------CcHHHHHHHHhhCCc-----------------------------------------
Q 017573 148 DEML-SR-----------------GFKDQIYDIFQLLPA----------------------------------------- 168 (369)
Q Consensus 148 H~~~-~~-----------------~~~~~~~~~~~~~~~----------------------------------------- 168 (369)
+.+. +. ........+...+..
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9744 10 000000000000000
Q ss_pred ----------------------------------------------------------------------------cCcE
Q 017573 169 ----------------------------------------------------------------------------KVQV 172 (369)
Q Consensus 169 ----------------------------------------------------------------------------~~~~ 172 (369)
-.++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 0467
Q ss_pred EEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHH
Q 017573 173 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDW 250 (369)
Q Consensus 173 i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~ 250 (369)
.+||||......++...+...++.+....+.... ..+.++... ...+...+.+.+... .+.++||||++.+.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~t-~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFLT-AAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEeC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 7899999877666666666666555544433221 223233333 345666777777553 25689999999999999
Q ss_pred HHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC---CCc-----EEEEecCCCCccchhhh
Q 017573 251 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHR 322 (369)
Q Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~~~~~~~Q~ 322 (369)
+++.|.+.++++..+||+++..+ ..+..+..+...|+|||+++++|+|++ ++. +||.++.|.+...|.|+
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 99999999999999999865444 444555555567999999999999999 565 89999999999999999
Q ss_pred hcccccCCCceeEEEEeccccHH
Q 017573 323 IGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 323 ~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+||+||.|++|.++.+++..|.-
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred cccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999985543
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=269.24 Aligned_cols=333 Identities=20% Similarity=0.270 Sum_probs=247.5
Q ss_pred HHhCCCCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhc-------cCCCccEEEEcCCHHHHHHHHH
Q 017573 11 IYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDY-------GLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 11 l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~-------~~~~~~~liv~P~~~l~~q~~~ 82 (369)
..-|+|..++..|.++++..++. .|.+|+||||+|||.+++++|++.+.. ...+.|++||+|.++|+.++.+
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 34578899999999999998864 899999999999999999999998874 2234589999999999999999
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC---CCCCCccEEEEechhHhhccCcHHHH
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS---LRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~---~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.|.+-+...|+.|..++|+....... -.+++|+|+|||+|--.-+++. ...+.+.+||+||+|.+-+.- ...+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-Gpvl 258 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVL 258 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc-cchH
Confidence 99998888899999999998754433 2358999999999943333322 123447899999999876432 3333
Q ss_pred HHHH-------hhCCccCcEEEEEeeCChhHHHHHHHhcCC-CEEEEecCccccccceeEEEEEccch--hh--------
Q 017573 160 YDIF-------QLLPAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKE--EW-------- 221 (369)
Q Consensus 160 ~~~~-------~~~~~~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 221 (369)
+.+. ....+..+++++|||.| +..+....+-.+ +..+......+.+-.+...+...+.. ..
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 3332 23345778999999995 777776666554 34455555566666666666555443 11
Q ss_pred hHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC----C-------------------CeeEEecCCCCHHHHHHHH
Q 017573 222 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----D-------------------HTVSATHGDMDQNTRDIIM 278 (369)
Q Consensus 222 ~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~----~-------------------~~~~~~~~~~~~~~r~~~~ 278 (369)
..+.+.+.++ .+..++|||.++..+.+.++.|.+. | ....+.|+++..++|.-..
T Consensus 338 ~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 338 CYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 1222233332 3458999999999988888888644 1 2467889999999999999
Q ss_pred HHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC----------CccchhhhhcccccCC--CceeEEEEeccccHHH
Q 017573 279 REFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT----------QPENYLHRIGRSGRFG--RKGVAINFVTRDDERM 346 (369)
Q Consensus 279 ~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~----------~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~~~~ 346 (369)
+.|..|.++||+||..+..|+|+|.-.++|.-...+ +..+..|.+|||||.+ ..|.++++.+.+....
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 999999999999999999999998555554322222 2346799999999974 6699998888877666
Q ss_pred HHHH
Q 017573 347 LFDI 350 (369)
Q Consensus 347 ~~~~ 350 (369)
+.++
T Consensus 496 Y~sL 499 (1230)
T KOG0952|consen 496 YESL 499 (1230)
T ss_pred HHHH
Confidence 6555
No 75
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1e-34 Score=274.45 Aligned_cols=335 Identities=17% Similarity=0.137 Sum_probs=226.1
Q ss_pred CCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 17 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
..|.|||..++..+... .++++..++|.|||..+.+.+...+..+... ++|||||. +|..||..++.+.+ ++.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~-rvLIVvP~-sL~~QW~~El~~kF---~l~ 225 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAE-RVLILVPE-TLQHQWLVEMLRRF---NLR 225 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCC-cEEEEcCH-HHHHHHHHHHHHHh---CCC
Confidence 36999999999877643 6899999999999998876666555554433 89999997 89999999986543 344
Q ss_pred EEEEECCcchHHHHH--HHccCCcEEEeccHHHHHHH-HcCCCCCCCccEEEEechhHhhccC--cHHHHHHHHhhCCcc
Q 017573 95 VHACVGGTSVREDQR--ILQAGVHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAK 169 (369)
Q Consensus 95 v~~~~~~~~~~~~~~--~~~~~~~iiv~t~~~l~~~~-~~~~~~~~~~~~viiDE~H~~~~~~--~~~~~~~~~~~~~~~ 169 (369)
...+.++........ ......+++|+|++.+...- ....+....|+++|+||||++.... ....+..+.......
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 444433321110000 01124689999999886421 1112333458999999999986321 122233333333334
Q ss_pred CcEEEEEeeCChh-HHH------------------HH-------------HHhc-CCC----------------------
Q 017573 170 VQVGVFSATMPPE-ALE------------------IT-------------RKFM-NKP---------------------- 194 (369)
Q Consensus 170 ~~~i~~saT~~~~-~~~------------------~~-------------~~~~-~~~---------------------- 194 (369)
..++++||||..+ ..+ +. ..+. .++
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 5689999999621 110 00 0000 000
Q ss_pred -----------------------------EEEEecCc---cccccceeEEEEEcc-------------------------
Q 017573 195 -----------------------------VRILVKRD---ELTLEGIKQFYVNVE------------------------- 217 (369)
Q Consensus 195 -----------------------------~~~~~~~~---~~~~~~~~~~~~~~~------------------------- 217 (369)
+.+...+. ..+......+....+
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~ 465 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIY 465 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHH
Confidence 00000000 000000011101000
Q ss_pred ----------chhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHH-hhCCCeeEEecCCCCHHHHHHHHHHHhcC--
Q 017573 218 ----------KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSG-- 284 (369)
Q Consensus 218 ----------~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-- 284 (369)
....+.+.+.++++.....|+||||++...+..+.+.| ...|+++..+||+++..+|.++++.|+++
T Consensus 466 ~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~ 545 (956)
T PRK04914 466 QEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEED 545 (956)
T ss_pred HHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCC
Confidence 01124556677777777789999999999999999999 56799999999999999999999999974
Q ss_pred CCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhcc
Q 017573 285 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 356 (369)
Q Consensus 285 ~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (369)
...|||||.++++|+|++.+++||++++|||+..|+||+||++|.|+.+.+.++.........+.+.+.+..
T Consensus 546 ~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 546 GAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999999999998888876655555666666555
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-34 Score=267.91 Aligned_cols=319 Identities=18% Similarity=0.208 Sum_probs=235.2
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
.|. .|++.|..+...+.+|+ +..+.||+|||++++++++.....+. .++|++|++.|+.|.++++..+...+|+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 355 78888888888777665 99999999999999999886555544 8999999999999999999999999999
Q ss_pred EEEEEECCcc-hHHHHHHHccCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEechhHhhccC-----------
Q 017573 94 KVHACVGGTS-VREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEMLSRG----------- 154 (369)
Q Consensus 94 ~v~~~~~~~~-~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~~~----------- 154 (369)
++....++.+ ...... ...++|+++|+..| +.++...- .....+.++|+||+|.+.=..
T Consensus 149 ~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred eEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 9999999887 444332 24589999999888 44444322 234568899999999754100
Q ss_pred -----cHHHHHHHHhhCCc-------------------------------------------------------------
Q 017573 155 -----FKDQIYDIFQLLPA------------------------------------------------------------- 168 (369)
Q Consensus 155 -----~~~~~~~~~~~~~~------------------------------------------------------------- 168 (369)
.......+...+..
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 01111111111100
Q ss_pred --------------------------------------------------------cCcEEEEEeeCChhHHHHHHHhcC
Q 017573 169 --------------------------------------------------------KVQVGVFSATMPPEALEITRKFMN 192 (369)
Q Consensus 169 --------------------------------------------------------~~~~i~~saT~~~~~~~~~~~~~~ 192 (369)
-.++.+||+|......++ ...++
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~~Y~ 385 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FEVYN 385 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HHHhC
Confidence 045778888886544433 44444
Q ss_pred CCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHh--ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCC
Q 017573 193 KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 270 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (369)
-.+.......+.........++ .....+...+...+.. ....++||||++.+.++.++..|.+.+.++..+||+++
T Consensus 386 l~v~~IPt~kp~~r~d~~~~i~--~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDKVF--VTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred CcEEECCCCCCcccccCCCeEE--cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 4443332222222222221222 2334466777666654 35679999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecCCcCCCCC---CCCc-----EEEEecCCCCccchhhhhcccccCCCceeEEEEeccc
Q 017573 271 QNTRDIIMREFRSGSSRVLITTDLLARGIDV---QQVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 271 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~---~~~~-----~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
..++..+...+..| .|+|||+++++|+|+ |++. +||.++.|.+...|.|++||+||.|++|.++.|++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 88887777776655 699999999999999 6888 9999999999999999999999999999999999875
Q ss_pred cHH
Q 017573 343 DER 345 (369)
Q Consensus 343 ~~~ 345 (369)
|.-
T Consensus 542 D~l 544 (790)
T PRK09200 542 DDL 544 (790)
T ss_pred HHH
Confidence 443
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.8e-34 Score=260.92 Aligned_cols=319 Identities=21% Similarity=0.251 Sum_probs=235.6
Q ss_pred CCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
|. .|++.|.-+...+.+|+ +.+++||+|||+++.++++-....+. .+.+++|+..|+.|.++++..+...+|++
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 44 67778877777766655 99999999999999988853333333 79999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcC------CCCCCCccEEEEechhHhhc-cC------------
Q 017573 95 VHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEMLS-RG------------ 154 (369)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~~-~~------------ 154 (369)
+..+.++.......... .++|+++|+..| +.+++.+ ......++++|+||+|++.- ..
T Consensus 128 v~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~ 205 (745)
T TIGR00963 128 VGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEK 205 (745)
T ss_pred EEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCC
Confidence 99999988765544333 479999999999 7777765 23456789999999998652 10
Q ss_pred ---cHHHHHHHHhhCC----------------------------------------------------------------
Q 017573 155 ---FKDQIYDIFQLLP---------------------------------------------------------------- 167 (369)
Q Consensus 155 ---~~~~~~~~~~~~~---------------------------------------------------------------- 167 (369)
.......+...+.
T Consensus 206 ~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 285 (745)
T TIGR00963 206 STELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVR 285 (745)
T ss_pred chHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0000000000000
Q ss_pred -----------------------------------------------------ccCcEEEEEeeCChhHHHHHHHhcCCC
Q 017573 168 -----------------------------------------------------AKVQVGVFSATMPPEALEITRKFMNKP 194 (369)
Q Consensus 168 -----------------------------------------------------~~~~~i~~saT~~~~~~~~~~~~~~~~ 194 (369)
--.++.+||+|...... .....++-+
T Consensus 286 d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~-E~~~iY~l~ 364 (745)
T TIGR00963 286 DGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE-EFEKIYNLE 364 (745)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH-HHHHHhCCC
Confidence 00457789999865443 344444444
Q ss_pred EEEEecCccccccceeEEEEEccchhhhHHHHHHHH-Hh-ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHH
Q 017573 195 VRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 272 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 272 (369)
+.......+.........++ .+...+...+.+.+ .. ..+.++||||++++.++.+++.|.+.+++...+|++ ..
T Consensus 365 vv~IPtnkp~~R~d~~d~i~--~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~ 440 (745)
T TIGR00963 365 VVVVPTNRPVIRKDLSDLVY--KTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NH 440 (745)
T ss_pred EEEeCCCCCeeeeeCCCeEE--cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hH
Confidence 44433222222222121222 22233444554433 22 256799999999999999999999999999999998 77
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCcCCCCCCC-------CcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 273 TRDIIMREFRSGSSRVLITTDLLARGIDVQQ-------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 273 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~-------~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+|+..+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+..|++..|.-
T Consensus 441 ~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 441 EREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 8888899999999999999999999999987 559999999999999999999999999999999999987654
Q ss_pred H
Q 017573 346 M 346 (369)
Q Consensus 346 ~ 346 (369)
+
T Consensus 521 ~ 521 (745)
T TIGR00963 521 M 521 (745)
T ss_pred H
Confidence 4
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.5e-35 Score=273.24 Aligned_cols=332 Identities=19% Similarity=0.223 Sum_probs=255.1
Q ss_pred HHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 9 RGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 9 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
.....||...+|+-|.+++...+.|+++++.+|||.||++||.++++-. ++-+++|.|..+|.+.+...+.+.
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~~- 327 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSKK- 327 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhhc-
Confidence 3447799999999999999999999999999999999999997765521 227999999999999888877443
Q ss_pred cccCcEEEEEECCcchHHH----HHHHcc--CCcEEEeccHHHHHH--HHcCCCCCCC---ccEEEEechhHhhccC--c
Q 017573 89 DYLGVKVHACVGGTSVRED----QRILQA--GVHVVVGTPGRVFDM--LRRQSLRPDY---IKMFVLDEADEMLSRG--F 155 (369)
Q Consensus 89 ~~~~~~v~~~~~~~~~~~~----~~~~~~--~~~iiv~t~~~l~~~--~~~~~~~~~~---~~~viiDE~H~~~~~~--~ 155 (369)
++....+.++...... ..+..+ ..+|++.|||++... +......+.. +.++|+||||..+.|+ |
T Consensus 328 ---~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 328 ---GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred ---CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 6777777777765433 233334 688999999998432 2222222222 7899999999998776 3
Q ss_pred H---HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHh
Q 017573 156 K---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET 232 (369)
Q Consensus 156 ~---~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (369)
+ ..+..+....+. ..++++|||........+-..++-.... .......+.++...+..-.........+...-..
T Consensus 405 Rp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~ 482 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLR 482 (941)
T ss_pred cHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhc
Confidence 3 344444555554 6799999999877666555544422111 2223333444433333332223233444444455
Q ss_pred ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC
Q 017573 233 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 312 (369)
Q Consensus 233 ~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 312 (369)
.+.+.+||||.++.+++.+...|++.+++...||++|++.+|..+...|..++++|++||=++++|+|-|+++.||++..
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHH
Q 017573 313 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 352 (369)
Q Consensus 313 ~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 352 (369)
|++...|.|.+|||||.|....|++|++..|...+..+..
T Consensus 563 Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 563 PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred chhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999998777765543
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-35 Score=241.74 Aligned_cols=329 Identities=19% Similarity=0.272 Sum_probs=245.6
Q ss_pred HHHHHHHh-CCCCC-CcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 6 NLLRGIYA-YGFEK-PSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 6 ~i~~~l~~-~~~~~-~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
.+..+|++ ||+.. -++.|++++..+.++ +++.|++|||+||++++.++++-. +. -++++.|..+|++++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~g---ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GG---ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CC---eEEEehHHHHHHHHHHH
Confidence 45566755 77754 579999999998875 899999999999999999887643 22 78999999999999999
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHH------ccCCcEEEeccHHHHHH----HHcCCCCCCCccEEEEechhHhhc
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRIL------QAGVHVVVGTPGRVFDM----LRRQSLRPDYIKMFVLDEADEMLS 152 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~iiv~t~~~l~~~----~~~~~~~~~~~~~viiDE~H~~~~ 152 (369)
.+.++ .+++..+.+.....+..+++ .....+++.||++.... +.+...+...+.++++||+|..+.
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 88876 55565566555555554433 23567999999876332 222223334478999999999987
Q ss_pred cC--cHHH---HHHHHhhCCccCcEEEEEeeCChhHHHHHHHh--cCCCEEEEecCccccccceeEEEEEccch---hhh
Q 017573 153 RG--FKDQ---IYDIFQLLPAKVQVGVFSATMPPEALEITRKF--MNKPVRILVKRDELTLEGIKQFYVNVEKE---EWK 222 (369)
Q Consensus 153 ~~--~~~~---~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 222 (369)
|+ |... +..+.+.++ ....+.+|||..+...+.+... +.+|+.+...... -...++..... .+.
T Consensus 156 WGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-----R~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-----RDNLFYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-----hhhhhHHHHHHHHhhhH
Confidence 76 3333 334444443 6669999999998776655433 3445433321111 11112211111 112
Q ss_pred HHHHHHHHHhcc-------------CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 017573 223 LETLCDLYETLA-------------ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 289 (369)
Q Consensus 223 ~~~l~~~~~~~~-------------~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 289 (369)
...|.++....- .+-.||||.+++.++.++-.|...|++...||+++...+|.++.+.|.++++.|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 333444333221 1356999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 290 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 290 i~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
++|..+++|+|-|++++||+++++.|..-|.|..||+||.|+.+.|-+|++..|.+.+.-+
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876544
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=229.35 Aligned_cols=336 Identities=18% Similarity=0.255 Sum_probs=254.7
Q ss_pred CCCHHHHHHH-HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 2 GLQENLLRGI-YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 2 ~l~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|-+....+.| +.|..+.+||.|..+++....+++.++..|||.||++++.++++-. .+-+|++||..+|++++
T Consensus 77 pws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedq 150 (695)
T KOG0353|consen 77 PWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQ 150 (695)
T ss_pred CCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHH
Confidence 3445555666 4578899999999999999999999999999999999998887742 22799999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHH----H--ccCCcEEEeccHHHHHHH-----HcCCCCCCCccEEEEechhH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRI----L--QAGVHVVVGTPGRVFDML-----RRQSLRPDYIKMFVLDEADE 149 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~--~~~~~iiv~t~~~l~~~~-----~~~~~~~~~~~~viiDE~H~ 149 (369)
.-.++.+ |+....+......++..+. . ......++.||+.+...- ....+....+.++.+||+|.
T Consensus 151 il~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhc 226 (695)
T KOG0353|consen 151 ILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHC 226 (695)
T ss_pred HHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceee
Confidence 8888887 5555555544443333221 1 234678999999884321 12234455689999999999
Q ss_pred hhccC--cH---HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEc-cchhhhH
Q 017573 150 MLSRG--FK---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNV-EKEEWKL 223 (369)
Q Consensus 150 ~~~~~--~~---~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (369)
.+.|+ |. ..+.-+.+.+ ++..++++|||......+.....+.-...+.. ......+++....... ...+...
T Consensus 227 csqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~n~dd~~ 304 (695)
T KOG0353|consen 227 CSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPGNEDDCI 304 (695)
T ss_pred hhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCCChHHHH
Confidence 98776 22 2333333444 46779999999987776666655543322222 2233333443333333 3445566
Q ss_pred HHHHHHHH-hccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC
Q 017573 224 ETLCDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 302 (369)
Q Consensus 224 ~~l~~~~~-~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 302 (369)
+.+..+++ +..+...||||-+.++++.++..|+.+|+....+|+.+.++++.-+-+.|..|++.|+|+|-+.++|+|-|
T Consensus 305 edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkp 384 (695)
T KOG0353|consen 305 EDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKP 384 (695)
T ss_pred HHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCC
Confidence 66666665 45677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCccchhh-------------------------------------------hhcccccCCCceeEEEEe
Q 017573 303 QVSLVINYDLPTQPENYLH-------------------------------------------RIGRSGRFGRKGVAINFV 339 (369)
Q Consensus 303 ~~~~vi~~~~~~~~~~~~Q-------------------------------------------~~GR~~R~~~~~~~~~~~ 339 (369)
++++||+...|.|...|.| ..||+||.+.+..|++|+
T Consensus 385 dvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 385 DVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYY 464 (695)
T ss_pred CeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEe
Confidence 9999999999999999999 789999999999999999
Q ss_pred ccccHHHHHH
Q 017573 340 TRDDERMLFD 349 (369)
Q Consensus 340 ~~~~~~~~~~ 349 (369)
.-.|.-...+
T Consensus 465 ~~~difk~ss 474 (695)
T KOG0353|consen 465 GFADIFKISS 474 (695)
T ss_pred chHHHHhHHH
Confidence 8665544433
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.6e-32 Score=254.68 Aligned_cols=322 Identities=20% Similarity=0.262 Sum_probs=253.9
Q ss_pred CCCHHHHHHH-HhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 2 GLQENLLRGI-YAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 2 ~l~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
+.+...+..+ ..|+| .-|+-|..|++.+.+. -+-+|||..|.|||.+|+-++..+...++ ++.++|||.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK---QVAvLVPTT 653 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK---QVAVLVPTT 653 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC---eEEEEcccH
Confidence 4455666677 45888 7899999999998753 46799999999999999999888887764 999999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHh
Q 017573 75 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 150 (369)
Q Consensus 75 ~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~ 150 (369)
-|++|.++.|++-....++++..+..-.+.++...++ .+..||+|+|+ .+.+..+...+++++|+||=|++
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqRF 728 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQRF 728 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhhc
Confidence 9999999999998888899999999888777766554 46899999994 44455667777899999999997
Q ss_pred hccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH
Q 017573 151 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (369)
.-. ..+.+ +.+..+.-++-|||||.|....+....+...-.+.... .....+..++...++..-+...+.++
T Consensus 729 GVk-~KEkL----K~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R~pV~T~V~~~d~~~ireAI~REl- 800 (1139)
T COG1197 729 GVK-HKEKL----KELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDRLPVKTFVSEYDDLLIREAILREL- 800 (1139)
T ss_pred Ccc-HHHHH----HHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCCcceEEEEecCChHHHHHHHHHHH-
Confidence 422 23333 44445666999999999988777766666543333322 22233444444444432222222222
Q ss_pred HhccCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEE
Q 017573 231 ETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308 (369)
Q Consensus 231 ~~~~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 308 (369)
..++++.-.+|.++..+.+++.|+.. .-++++.||.|++.+-++++..|.+|+++|||||.+++.|+|+|+++.+|
T Consensus 801 --~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 801 --LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred --hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 34678888999999999999999987 44799999999999999999999999999999999999999999999998
Q ss_pred EecCC-CCccchhhhhcccccCCCceeEEEEeccc
Q 017573 309 NYDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 309 ~~~~~-~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
+-+.. ...+++-|.-||+||.++.+.||.++.+.
T Consensus 879 Ie~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 879 IERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred EeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 87653 46789999999999999999999999854
No 82
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=230.76 Aligned_cols=289 Identities=29% Similarity=0.469 Sum_probs=233.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc---CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCC
Q 017573 62 LVQCQALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 138 (369)
Q Consensus 62 ~~~~~~liv~P~~~l~~q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~ 138 (369)
++.++++|+-|+++|++|..+++.+|...+ .++...+.++.....+...+..+.+|+|+||.++.+.+......+..
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 344579999999999999999776664333 34444677777777777888889999999999999999999999999
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCc------cCcEEEEEeeCCh-hHHHHHHHhcCCCEEEEecCccccccceeE
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPA------KVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQ 211 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~------~~~~i~~saT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (369)
+.++++||++.+...++...+.++...+|. ..|.+..|||.+. +.....++.+.-|..+....+...+....+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999998999999988877763 5688899999864 444566677778888877777776666665
Q ss_pred EEEEccchhh---------------------------------hH-----HHHHHHHHhccCCCeEEEeCCHhhHHHHHH
Q 017573 212 FYVNVEKEEW---------------------------------KL-----ETLCDLYETLAITQSVIFVNTRRKVDWLTD 253 (369)
Q Consensus 212 ~~~~~~~~~~---------------------------------~~-----~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~ 253 (369)
+.....+... .. +.-...+++++-.++|+||.+..++..+.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 5554433211 00 111122344566789999999999999999
Q ss_pred HHhhCC---CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCC
Q 017573 254 KMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 330 (369)
Q Consensus 254 ~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 330 (369)
++.+.+ +.+..+||+..+.+|..-++.|+.++.++||||+.+.+|+|+.++..+|.+.+|.....|.+|+||+||..
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998774 47899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEEEeccccHHHHHHH
Q 017573 331 RKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ 350 (369)
+.|.++.++....++.++..
T Consensus 604 rmglaislvat~~ekvwyh~ 623 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHW 623 (725)
T ss_pred hcceeEEEeeccchheeehh
Confidence 88999888876655555444
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.3e-31 Score=250.16 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=218.1
Q ss_pred CCcHhhhhhhhccccC---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 18 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
.|++.|+++++.+.++ +++++.++||+|||.+++.++...+..+. ++|+++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~---~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGK---QALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 78999999999999999888777776543 89999999999999999998754 567
Q ss_pred EEEEECCcchHHHH----HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc------HHHHHHHHh
Q 017573 95 VHACVGGTSVREDQ----RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF------KDQIYDIFQ 164 (369)
Q Consensus 95 v~~~~~~~~~~~~~----~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~------~~~~~~~~~ 164 (369)
+..++++.+..+.. ....+..+|+|+|+..++ ....+++++|+||+|.....+. .+.+. ...
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHH
Confidence 88888887654432 234457899999998764 2345689999999998653321 12222 223
Q ss_pred hCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcc--ccccceeEEEEEccch------hhhHHHHHHHH-Hhc-c
Q 017573 165 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFYVNVEKE------EWKLETLCDLY-ETL-A 234 (369)
Q Consensus 165 ~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~l~~~~-~~~-~ 234 (369)
....+.+++++||||+.......... ........... ...+.+. ....... ......+.+.+ +.. .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~--~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVE--IIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEE--EEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 33457889999999986655444321 11111111111 1111111 1111000 00112222222 222 2
Q ss_pred CCCeEEEeCCHh------------------------------------------------------------hHHHHHHH
Q 017573 235 ITQSVIFVNTRR------------------------------------------------------------KVDWLTDK 254 (369)
Q Consensus 235 ~~k~lv~~~~~~------------------------------------------------------------~~~~~~~~ 254 (369)
++++|+|+|.+. -++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 347788776421 34567777
Q ss_pred HhhC--CCeeEEecCCCC--HHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC--C----------ccc
Q 017573 255 MRSR--DHTVSATHGDMD--QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--Q----------PEN 318 (369)
Q Consensus 255 l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~--~----------~~~ 318 (369)
|++. +.++..+|+++. .++++++++.|.+|+.+|||+|+++..|+|+|+++.|++++... + ...
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 7775 568889999885 46789999999999999999999999999999999997776432 2 246
Q ss_pred hhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 319 YLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 319 ~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
+.|++||+||.++.|.+++.....+...++.+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 89999999999999999988877765555444
No 84
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=4.6e-32 Score=262.01 Aligned_cols=304 Identities=18% Similarity=0.212 Sum_probs=196.8
Q ss_pred CCCcHhhhhhhhcccc-----CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 17 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~-----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
..+|+||.+|+.++.+ .++.++++|||||||.+++..+...+.... ..++|+++|+++|+.|+.+.|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 4699999999988763 367999999999999987665554444433 3489999999999999999998874321
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcC-----CCCCCCccEEEEechhHhhcc-------------
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIKMFVLDEADEMLSR------------- 153 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~-----~~~~~~~~~viiDE~H~~~~~------------- 153 (369)
+.......+... ...........|+|+|++++...+... ......+++||+||||+....
T Consensus 491 ~~~~~~i~~i~~--L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 491 DQTFASIYDIKG--LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred ccchhhhhchhh--hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 211111111000 011112345789999999997765321 133566899999999985310
Q ss_pred --CcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcccccc---------cee------------
Q 017573 154 --GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE---------GIK------------ 210 (369)
Q Consensus 154 --~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------ 210 (369)
.+...+..++..+. ...++|||||...... +++.++......+..... .+.
T Consensus 569 ~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 569 QLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred hhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 11345566666553 4689999999754332 222322211100000000 000
Q ss_pred ------------EE-EEEccch------h--------hhH----HHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC-
Q 017573 211 ------------QF-YVNVEKE------E--------WKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR- 258 (369)
Q Consensus 211 ------------~~-~~~~~~~------~--------~~~----~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~- 258 (369)
.. ....+.. . ... +.+.+.+.....+|+||||.+.++|+.+.+.|.+.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 00 0000000 0 000 11112222223479999999999999998887653
Q ss_pred -----C---CeeEEecCCCCHHHHHHHHHHHhcCCC-cEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC
Q 017573 259 -----D---HTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 259 -----~---~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
+ ..+..++|+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.+++|+++.++.|...|.|++||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 1 24556888764 46789999999876 6899999999999999999999999999999999999999997
Q ss_pred CC
Q 017573 330 GR 331 (369)
Q Consensus 330 ~~ 331 (369)
..
T Consensus 801 ~~ 802 (1123)
T PRK11448 801 CP 802 (1123)
T ss_pred Cc
Confidence 54
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=7.5e-32 Score=218.62 Aligned_cols=197 Identities=54% Similarity=0.804 Sum_probs=176.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc--CCCccEEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVQCQALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~liv~P~~~l~~ 78 (369)
+++++.+.+.+.++|+..|+++|+++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+++|+.
T Consensus 4 ~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~ 83 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELAL 83 (203)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999888776 45568999999999999
Q ss_pred HHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHH
Q 017573 79 QIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQ 158 (369)
Q Consensus 79 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~ 158 (369)
|+.+.+..+....+..+....++...........++++|+|+|++.+...+.+.......++++|+||+|.+.+..+...
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~ 163 (203)
T cd00268 84 QIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQ 163 (203)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHH
Confidence 99999999887778888888888887666666666789999999999999988877778899999999999988888889
Q ss_pred HHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEE
Q 017573 159 IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRI 197 (369)
Q Consensus 159 ~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~ 197 (369)
+..+.+.++...+++++|||+++........++..++.+
T Consensus 164 ~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 164 IREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999998899999999999988888888888877654
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-31 Score=214.92 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=222.9
Q ss_pred CCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
.++++.|+.+-+.+. +.++.+++|-||+|||.+....+...+..+. .+.+.+|+...+.+++.+++..+. +
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~---~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG---RVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC---eEEEecCcccchHHHHHHHHHhhc--c
Confidence 369999999877765 4689999999999999998878887777776 899999999999999999887654 4
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcE
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 172 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
..+..++|+..... ...++|+|.+++++.... ||++|+||+|.+.-..-......+.+........
T Consensus 171 ~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~ 236 (441)
T COG4098 171 CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGAT 236 (441)
T ss_pred CCeeeEecCCchhc-------cccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcccCce
Confidence 56777887765222 268999999999887666 8999999999876444333344444555556678
Q ss_pred EEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhH------HHHHHHHHhc--cCCCeEEEeCC
Q 017573 173 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL------ETLCDLYETL--AITQSVIFVNT 244 (369)
Q Consensus 173 i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~--~~~k~lv~~~~ 244 (369)
+++||||+..++.-+...-... .......-..+-..+.+.....-..++ ..+..++++. .+.+++||+++
T Consensus 237 IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~ 314 (441)
T COG4098 237 IYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPE 314 (441)
T ss_pred EEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecc
Confidence 9999999876655443322211 222211111111111222222111111 2566666554 34699999999
Q ss_pred HhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCC--CCccchh
Q 017573 245 RRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQPENYL 320 (369)
Q Consensus 245 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~~~~~~~ 320 (369)
++.++.++..|++. ...++.+|+. ...|.+..+.|++|++++||+|.++++|+.+|++++.++-.-. .+...++
T Consensus 315 I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLV 392 (441)
T COG4098 315 IETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALV 392 (441)
T ss_pred hHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHH
Confidence 99999999999554 3355677774 5678999999999999999999999999999999998866543 6788999
Q ss_pred hhhcccccCC--CceeEEEEeccccHHHHH
Q 017573 321 HRIGRSGRFG--RKGVAINFVTRDDERMLF 348 (369)
Q Consensus 321 Q~~GR~~R~~--~~~~~~~~~~~~~~~~~~ 348 (369)
|..||+||.- ..|.+..|.......+.+
T Consensus 393 QIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 393 QIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred HHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 9999999974 348888777766555443
No 87
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.9e-31 Score=250.38 Aligned_cols=317 Identities=20% Similarity=0.211 Sum_probs=216.5
Q ss_pred CCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 18 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
+|++||.+++..+. .+.++|+..++|.|||+.++..+...........++|||||. ++..+|.+++.+++. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 68999999998875 468899999999999998765554433333333379999997 677889999999875 35
Q ss_pred EEEEEECCcchHHHH---HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccC
Q 017573 94 KVHACVGGTSVREDQ---RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 170 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~---~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
.+...+|........ .......+|+|+|++.+...... +....|++||+||+|++.+.. ......+..+.. .
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~a-~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFST-N 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHH--HHHHHHHHHhhc-C
Confidence 666667655432221 12235689999999998654322 333458999999999986543 445555556653 3
Q ss_pred cEEEEEeeCChhHHHHHHHhcC--CCEEE----------------------------------Ee-cC---cccccccee
Q 017573 171 QVGVFSATMPPEALEITRKFMN--KPVRI----------------------------------LV-KR---DELTLEGIK 210 (369)
Q Consensus 171 ~~i~~saT~~~~~~~~~~~~~~--~~~~~----------------------------------~~-~~---~~~~~~~~~ 210 (369)
..+++||||-.+....+..++. .|..+ .. .. ...++....
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 4688999996432221111100 00000 00 00 000000000
Q ss_pred EEEEEccc------------------------------------------------------------hhhhHHHHHHHH
Q 017573 211 QFYVNVEK------------------------------------------------------------EEWKLETLCDLY 230 (369)
Q Consensus 211 ~~~~~~~~------------------------------------------------------------~~~~~~~l~~~~ 230 (369)
..++.... ...++..+..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 01111100 112333444444
Q ss_pred Hhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEecCCcCCCCCCCCc
Q 017573 231 ETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLARGIDVQQVS 305 (369)
Q Consensus 231 ~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~~~~ 305 (369)
... .+.|+|||+.....+..+.++|...++.+..++|.++..+|..+++.|++.. ..+|++|.+.+.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 332 3469999999999999999999999999999999999999999999997643 34678999999999999999
Q ss_pred EEEEecCCCCccchhhhhcccccCCCceeEE--EEeccc
Q 017573 306 LVINYDLPTQPENYLHRIGRSGRFGRKGVAI--NFVTRD 342 (369)
Q Consensus 306 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~--~~~~~~ 342 (369)
+||+++++||+....|++||+.|.|+...|. .++..+
T Consensus 561 ~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 561 IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999886554 444444
No 88
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.1e-30 Score=243.75 Aligned_cols=313 Identities=17% Similarity=0.156 Sum_probs=201.0
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc--
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-- 91 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~-- 91 (369)
++..+|||+|+.+......++.+++.||||+|||.+++.++...+..+.. .+++|..|++++++++++++.++....
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~-~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLA-DSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCC-CeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 33568999999886544456789999999999999998877755544433 389999999999999999987643221
Q ss_pred CcEEEEEECCcchHHH---------------------HHHHc---c---CCcEEEeccHHHHHHHHcCC-CCCCCc----
Q 017573 92 GVKVHACVGGTSVRED---------------------QRILQ---A---GVHVVVGTPGRVFDMLRRQS-LRPDYI---- 139 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~---------------------~~~~~---~---~~~iiv~t~~~l~~~~~~~~-~~~~~~---- 139 (369)
...+...+|....... ...+. + -..++|+|.++++....... .....+
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 2345555554321110 01111 1 26899999999875433321 111112
Q ss_pred cEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEEEEeeCChhHHHHHHHhcCCC----------EEEEecC---cccc
Q 017573 140 KMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRKFMNKP----------VRILVKR---DELT 205 (369)
Q Consensus 140 ~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~~~~~~~~----------~~~~~~~---~~~~ 205 (369)
++||+||+|.+.. .....+..+++.+. ....+|+||||++....+.+...+... ....... ....
T Consensus 441 svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~ 519 (878)
T PRK09694 441 SVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFD 519 (878)
T ss_pred CeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeee
Confidence 5899999998743 23344455554432 356799999999877655443322210 0000000 0000
Q ss_pred ---c----cceeEEEEE-c--cchhhhHHHHHHHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCC---CeeEEecCCCCH
Q 017573 206 ---L----EGIKQFYVN-V--EKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRD---HTVSATHGDMDQ 271 (369)
Q Consensus 206 ---~----~~~~~~~~~-~--~~~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~ 271 (369)
. ......... . .........+..+.+.. .+++++||||+++.++.+++.|++.+ .++..+|++++.
T Consensus 520 ~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~ 599 (878)
T PRK09694 520 LSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTL 599 (878)
T ss_pred ccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCH
Confidence 0 000111110 1 11111223334444432 45689999999999999999999764 579999999999
Q ss_pred HHH----HHHHHHH-hcCC---CcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCC
Q 017573 272 NTR----DIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331 (369)
Q Consensus 272 ~~r----~~~~~~f-~~~~---~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 331 (369)
.+| +++++.| ++|+ ..|||+|++++.|+|+ +++.+|....| ...++||+||++|.+.
T Consensus 600 ~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 600 NDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 998 4567777 5555 4699999999999999 57888776555 6799999999999865
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4e-31 Score=238.26 Aligned_cols=304 Identities=21% Similarity=0.295 Sum_probs=203.0
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHH----HHHHc
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED----QRILQ 112 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~ 112 (369)
+++||||+|||.+++.++.+.+..+. +++|++|+.+|+.|+.+.+++.+ +.++..++++.+..+. .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~---~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK---SVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 57899999999999877766665544 89999999999999999998754 4567788887665433 33344
Q ss_pred cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-----c-HHHHHHHHhhCCccCcEEEEEeeCChhHHHH
Q 017573 113 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F-KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 186 (369)
Q Consensus 113 ~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~ 186 (369)
++++|+|+|+..++. ...++++||+||.|....++ | .+.+..+... ..+.+++++||||+.+....
T Consensus 75 g~~~IVVGTrsalf~-------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHcC-------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHHH
Confidence 678999999987752 34568999999999876333 1 1223333333 34677999999988655443
Q ss_pred HHHhcCCCEEEEecCc--cccccceeEEEEEccchh---hhHHHHHHHH-Hhc-cCCCeEEEeCCHhh------------
Q 017573 187 TRKFMNKPVRILVKRD--ELTLEGIKQFYVNVEKEE---WKLETLCDLY-ETL-AITQSVIFVNTRRK------------ 247 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~l~~~~-~~~-~~~k~lv~~~~~~~------------ 247 (369)
... +.......... ....+.+. ........ ...+.+.+.+ +.. .++++|||+|.+..
T Consensus 147 ~~~--g~~~~~~l~~r~~~~~~p~v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 147 AKQ--KAYRLLVLTRRVSGRKPPEVK--LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred Hhc--CCeEEeechhhhcCCCCCeEE--EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 322 11111111111 11111111 11111111 1112233323 222 34578999776532
Q ss_pred ------------------------------------------------HHHHHHHHhhC--CCeeEEecCCCCHHHH--H
Q 017573 248 ------------------------------------------------VDWLTDKMRSR--DHTVSATHGDMDQNTR--D 275 (369)
Q Consensus 248 ------------------------------------------------~~~~~~~l~~~--~~~~~~~~~~~~~~~r--~ 275 (369)
.+.+.+.|++. +.++..+|++++...+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46777777776 5688999999876655 8
Q ss_pred HHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC------------CccchhhhhcccccCCCceeEEEEecccc
Q 017573 276 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
++++.|.+|+.+|||+|+++..|+|+|+++.|++++... ....+.|++||+||.++.|.+++.....+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999987665432 13468999999999999999997776655
Q ss_pred HHHHH-----HHHHHhcccc
Q 017573 344 ERMLF-----DIQKFYNVVI 358 (369)
Q Consensus 344 ~~~~~-----~~~~~~~~~~ 358 (369)
...++ ++..|++.++
T Consensus 383 ~~~~~~~~~~d~~~f~~~el 402 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQEL 402 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHH
Confidence 54333 3445555544
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=245.93 Aligned_cols=339 Identities=20% Similarity=0.308 Sum_probs=249.3
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCC--------CccEEEEcCC
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLV--------QCQALVLAPT 73 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--------~~~~liv~P~ 73 (369)
+|.|-+.++. |..++.+.|.........+ .++++|||||+|||.++++.+++.+..+.+ ..+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4555555554 5567999999999988876 789999999999999999999999866543 2379999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCC---CCccEEEEechhHh
Q 017573 74 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP---DYIKMFVLDEADEM 150 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~---~~~~~viiDE~H~~ 150 (369)
++|++.|...|.+....+|++|...+|+....... .....|+|+||+.+-- +.++..+. +-++++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~Di-ITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDI-ITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhh-hhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999986633221 2357999999999943 33333232 33789999999987
Q ss_pred hccCcHHHHHHHH-------hhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhh--
Q 017573 151 LSRGFKDQIYDIF-------QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW-- 221 (369)
Q Consensus 151 ~~~~~~~~~~~~~-------~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 221 (369)
-+. ....+.++. ..-...++++++|||++ +-.+....+..++.........+.+..+.+-++.+.....
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLP-Ny~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLP-NYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCC-chhhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 432 123332222 22234788999999996 5555555444555555556667777777777776643222
Q ss_pred hH----HHH-HHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC-------------------------------------C
Q 017573 222 KL----ETL-CDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------D 259 (369)
Q Consensus 222 ~~----~~l-~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~-------------------------------------~ 259 (369)
.. +.. .++++.....++|||+-+++++-+.++.++.. .
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 22 222 23444445579999999999887777766522 3
Q ss_pred CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ecC------CCCccchhhhhcccccC
Q 017573 260 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTQPENYLHRIGRSGRF 329 (369)
Q Consensus 260 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~------~~~~~~~~Q~~GR~~R~ 329 (369)
..++..|++|+..+|....+.|.+|.++|+++|..++.|+|+|.-.++|- +++ +.++.+..||.||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 45889999999999999999999999999999999999999987666653 222 34678899999999998
Q ss_pred CC--ceeEEEEeccccHHHHHH
Q 017573 330 GR--KGVAINFVTRDDERMLFD 349 (369)
Q Consensus 330 ~~--~~~~~~~~~~~~~~~~~~ 349 (369)
+. .|..+++.+..+...+.+
T Consensus 688 ~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHH
Confidence 64 477777777666555544
No 91
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-30 Score=250.76 Aligned_cols=303 Identities=21% Similarity=0.317 Sum_probs=203.4
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH----HHHHHHHHHHHH-hccccCcE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR----ELAQQIEKVMRA-LGDYLGVK 94 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~----~l~~q~~~~~~~-~~~~~~~~ 94 (369)
+.+-.+++..+.+++.++++|+||||||+.. .-++.....+.. +.+++.-|++ +++.+.++++.. ++...|+.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTql-Pq~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQL-PKICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 3445567777777888999999999999852 223322222221 1333344754 677777777764 33333333
Q ss_pred EEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhH-hhccCcHH-HHHHHHhhCCccCcE
Q 017573 95 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKD-QIYDIFQLLPAKVQV 172 (369)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~~~~-~~~~~~~~~~~~~~~ 172 (369)
+.. .. ....+++|+++|+..|+..+.... .++.++++|+||+|+ ..+.++.- .+..++.. .+..|+
T Consensus 154 vrf----~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKv 221 (1294)
T PRK11131 154 VRF----ND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKV 221 (1294)
T ss_pred ecC----cc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceE
Confidence 311 11 113457999999999999887654 478899999999995 55555442 22233222 235789
Q ss_pred EEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccch-----hhhHHHHHHHHH---hccCCCeEEEeCC
Q 017573 173 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE-----EWKLETLCDLYE---TLAITQSVIFVNT 244 (369)
Q Consensus 173 i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~k~lv~~~~ 244 (369)
++||||++.+ .+...+...++ +.+..... .+...+...... ......+...+. ....+++|||+++
T Consensus 222 ILmSATid~e--~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 222 IITSATIDPE--RFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EEeeCCCCHH--HHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 9999999643 44444444453 33332221 234444443221 112222222221 2345789999999
Q ss_pred HhhHHHHHHHHhhCCCe---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC---------
Q 017573 245 RRKVDWLTDKMRSRDHT---VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------- 312 (369)
Q Consensus 245 ~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------- 312 (369)
..+++.+++.|.+.+.. +..+||+++.++|.++++. .|..+|+|+|+++++|+|+|++++||.++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999987654 6789999999999999875 467899999999999999999999999863
Q ss_pred ------C---CCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 313 ------P---TQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 313 ------~---~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
| .|..++.||.||+||. .+|.||.++++.+..
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 2 3446899999999999 789999999976644
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.6e-30 Score=230.81 Aligned_cols=314 Identities=19% Similarity=0.257 Sum_probs=232.4
Q ss_pred HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
..++| +|-++|++|+-++..|.+++|.|+|.+|||++|-.++.-...+.. +++|-+|-++|-+|-+++|++.+.+.
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~T---R~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMT---RTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhcc---ceEecchhhhhccchHHHHHHhcccc
Confidence 34566 899999999999999999999999999999998777665544443 89999999999999999999876554
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 171 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
| .++|+.. +..++.++|+|.+.|.+++.++.-....+..||+||+|.+.+....-.+..++-.+|...+
T Consensus 368 g----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 G----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred c----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 4 6777665 3456899999999999999998888888999999999999887777888889999999999
Q ss_pred EEEEEeeCChhHHHHHHHhcC-CCEEEEecCccccccceeEEEEEccch-------------------------------
Q 017573 172 VGVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKE------------------------------- 219 (369)
Q Consensus 172 ~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 219 (369)
+|++|||-+ +..++..+... +...+.+......+-.++++...-..-
T Consensus 437 ~IlLSATVP-N~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 437 FILLSATVP-NTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEEeccCC-ChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999986 44444443332 111122211111111111111100000
Q ss_pred ---------------------------------h---hhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCC----
Q 017573 220 ---------------------------------E---WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD---- 259 (369)
Q Consensus 220 ---------------------------------~---~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~---- 259 (369)
. ...-.+...+....--+++|||-+++.|+..++.|...+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0 001112222222233488999999999999998887552
Q ss_pred -----------------------------------CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCC
Q 017573 260 -----------------------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 304 (369)
Q Consensus 260 -----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 304 (369)
..+++.||++=+--++-+.-.|..|-++||+||..+.+|+|+|.
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA- 674 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA- 674 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-
Confidence 24888999998888899999999999999999999999999985
Q ss_pred cEEEEecCC---------CCccchhhhhcccccCCC--ceeEEEEeccc
Q 017573 305 SLVINYDLP---------TQPENYLHRIGRSGRFGR--KGVAINFVTRD 342 (369)
Q Consensus 305 ~~vi~~~~~---------~~~~~~~Q~~GR~~R~~~--~~~~~~~~~~~ 342 (369)
+.|++.... -.+.+|.|+.|||||.|- .|++++.....
T Consensus 675 RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 675 RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 444444332 267899999999999984 48888777654
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9.1e-29 Score=228.36 Aligned_cols=317 Identities=18% Similarity=0.216 Sum_probs=222.3
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 99 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 99 (369)
+||=.+++-.+.-.+.-+..++||+|||+++.++++.....+. .++|++|++.|+.|.++++..+...+|+++..+.
T Consensus 82 ~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~ 158 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIY 158 (896)
T ss_pred CcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEe
Confidence 3333344444444566799999999999999999987665543 7999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHccCCcEEEeccHHH-HHHHHcC-CCCC-----CCccEEEEechhHhhccC----------------cH
Q 017573 100 GGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIKMFVLDEADEMLSRG----------------FK 156 (369)
Q Consensus 100 ~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~-~~~~-----~~~~~viiDE~H~~~~~~----------------~~ 156 (369)
++.......... .++|+++||..| +.+++.+ .+.. ..+.++|+||+|.+.-.. ..
T Consensus 159 gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y 236 (896)
T PRK13104 159 PDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELY 236 (896)
T ss_pred CCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHH
Confidence 987766554433 589999999999 8888776 2333 468999999999865100 00
Q ss_pred HHHHHHHhhCCc--------------c-----------------------------------------------------
Q 017573 157 DQIYDIFQLLPA--------------K----------------------------------------------------- 169 (369)
Q Consensus 157 ~~~~~~~~~~~~--------------~----------------------------------------------------- 169 (369)
.....+...+.. +
T Consensus 237 ~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~ 316 (896)
T PRK13104 237 IKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFH 316 (896)
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhc
Confidence 111111111000 0
Q ss_pred ---------------------------------------------------------------CcEEEEEeeCChhHHHH
Q 017573 170 ---------------------------------------------------------------VQVGVFSATMPPEALEI 186 (369)
Q Consensus 170 ---------------------------------------------------------------~~~i~~saT~~~~~~~~ 186 (369)
.++-+||+|...... .
T Consensus 317 ~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~-E 395 (896)
T PRK13104 317 RDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAY-E 395 (896)
T ss_pred CCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHH-H
Confidence 344556666543332 2
Q ss_pred HHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH-Hhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEE
Q 017573 187 TRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 264 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~ 264 (369)
....++-++.......+.........++ .+...+...+.+.+ ..+ .+.++||||++++.++.+++.|.+.+++..+
T Consensus 396 f~~iY~l~Vv~IPtnkp~~R~d~~d~v~--~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~v 473 (896)
T PRK13104 396 FQQIYNLEVVVIPTNRSMIRKDEADLVY--LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQV 473 (896)
T ss_pred HHHHhCCCEEECCCCCCcceecCCCeEE--cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEe
Confidence 3333333332222221111111111111 22233444444444 333 5569999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCC--------------------------------------CcE
Q 017573 265 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------VSL 306 (369)
Q Consensus 265 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~~~ 306 (369)
+|+++...++..+.+.|+.|. |+|||+++++|+|+.= -=+
T Consensus 474 Lnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~ 551 (896)
T PRK13104 474 LNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLR 551 (896)
T ss_pred ecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCE
Confidence 999999999999999999995 9999999999999861 225
Q ss_pred EEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 017573 307 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 307 vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
||....+.|...=.|..||+||.|.+|.+-.|++-.|.-+
T Consensus 552 VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 552 IIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred EEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 6666777888888999999999999999999988766543
No 94
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=225.61 Aligned_cols=308 Identities=18% Similarity=0.256 Sum_probs=232.9
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
++-|+|..++..+-.+++++|.|.|.+|||.+|-.+|+..++.+. +++|-.|-++|.+|-++++..-+++.|+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~DVGL---- 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFKDVGL---- 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhcccce----
Confidence 788999999999999999999999999999999999998888766 8999999999999999999876555444
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEe
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
.+|+-+ ++..+..+|+|.+.|..++.++..-...+.-||+||+|.+.+....-.+...+-.+|++.+.+|+||
T Consensus 202 MTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 445544 3445889999999999999988877777889999999999887766666677778899999999999
Q ss_pred eCChhHHHHHHHhcC---CCEEEEecCccccccceeEEEEEccc---------h----hh--------------------
Q 017573 178 TMPPEALEITRKFMN---KPVRILVKRDELTLEGIKQFYVNVEK---------E----EW-------------------- 221 (369)
Q Consensus 178 T~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~-------------------- 221 (369)
|.+ +..+++++.+. .|.++. ...+.+..+.++.++... . +.
T Consensus 275 TiP-NA~qFAeWI~~ihkQPcHVV--YTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~ 351 (1041)
T KOG0948|consen 275 TIP-NARQFAEWICHIHKQPCHVV--YTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKK 351 (1041)
T ss_pred cCC-CHHHHHHHHHHHhcCCceEE--eecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccc
Confidence 996 66667666653 232221 122223333333222111 0 00
Q ss_pred ------------------hHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCC------------------------
Q 017573 222 ------------------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD------------------------ 259 (369)
Q Consensus 222 ------------------~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~------------------------ 259 (369)
.+..+...+......++|||+-++++|+.++-.+.+..
T Consensus 352 ~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lsee 431 (1041)
T KOG0948|consen 352 ANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEE 431 (1041)
T ss_pred cccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChh
Confidence 11112222222234579999999999999877776552
Q ss_pred ---------------CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCC--------CCc
Q 017573 260 ---------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--------TQP 316 (369)
Q Consensus 260 ---------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--------~~~ 316 (369)
..+++.|+++=+--++-+.-.|..|-+++|+||...+.|+|+|.-++|+..-.- -|.
T Consensus 432 Dr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwiss 511 (1041)
T KOG0948|consen 432 DRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISS 511 (1041)
T ss_pred hccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecc
Confidence 248899999988888889999999999999999999999999866666532211 156
Q ss_pred cchhhhhcccccCCCc--eeEEEEeccc
Q 017573 317 ENYLHRIGRSGRFGRK--GVAINFVTRD 342 (369)
Q Consensus 317 ~~~~Q~~GR~~R~~~~--~~~~~~~~~~ 342 (369)
.+|+|+.|||||.|.+ |.||+.++..
T Consensus 512 GEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 512 GEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceEEecccccccCCCCCceEEEEecCc
Confidence 7999999999999865 7777777754
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.8e-29 Score=228.00 Aligned_cols=317 Identities=18% Similarity=0.201 Sum_probs=227.8
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.|.-+.-.+.+|+ +....||+|||+++.++++.....+. .+-+++|+.-|+.+-++++..++..+|+++..
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 67777777665554444 99999999999999988887777666 89999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHH-HHHHcCC------CCCCCccEEEEechhHhh-ccC---------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVF-DMLRRQS------LRPDYIKMFVLDEADEML-SRG--------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~-~~~~~~~------~~~~~~~~viiDE~H~~~-~~~--------------- 154 (369)
+.++.+........ .++|+++|...|. ..++..- .....+.+.|+||++.+. +..
T Consensus 155 i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~ 232 (796)
T PRK12906 155 NLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATD 232 (796)
T ss_pred eCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchH
Confidence 98887766555443 4799999998873 3343321 112457899999999754 100
Q ss_pred cHHHHHHHHhhCCc------------------------------------------------------------------
Q 017573 155 FKDQIYDIFQLLPA------------------------------------------------------------------ 168 (369)
Q Consensus 155 ~~~~~~~~~~~~~~------------------------------------------------------------------ 168 (369)
.......+...+..
T Consensus 233 ~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~ 312 (796)
T PRK12906 233 LYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIML 312 (796)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHh
Confidence 00000000000000
Q ss_pred --------------------------------------------------------------cCcEEEEEeeCChhHHHH
Q 017573 169 --------------------------------------------------------------KVQVGVFSATMPPEALEI 186 (369)
Q Consensus 169 --------------------------------------------------------------~~~~i~~saT~~~~~~~~ 186 (369)
-.++.+||+|...... .
T Consensus 313 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~-E 391 (796)
T PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE-E 391 (796)
T ss_pred cCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH-H
Confidence 0456678888764433 3
Q ss_pred HHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEE
Q 017573 187 TRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 264 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~ 264 (369)
....++-++.......+......... ...+...+...+.+.+... .+.++||||++++.++.+++.|.+.+.+...
T Consensus 392 f~~iY~l~vv~IPtnkp~~r~d~~d~--i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~ 469 (796)
T PRK12906 392 FREIYNMEVITIPTNRPVIRKDSPDL--LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAV 469 (796)
T ss_pred HHHHhCCCEEEcCCCCCeeeeeCCCe--EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeE
Confidence 34444444333222221111111111 1123344666666666433 5679999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC---CCc-----EEEEecCCCCccchhhhhcccccCCCceeEE
Q 017573 265 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAI 336 (369)
Q Consensus 265 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~ 336 (369)
+|+++...++..+.+.++.|. |+|||+++++|.|++ ++. +||..+.|.|...+.|+.||+||.|.+|.+.
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999988887777777777666 999999999999995 788 9999999999999999999999999999999
Q ss_pred EEeccccHHH
Q 017573 337 NFVTRDDERM 346 (369)
Q Consensus 337 ~~~~~~~~~~ 346 (369)
.|++..|.-+
T Consensus 548 ~~~sleD~l~ 557 (796)
T PRK12906 548 FYLSLEDDLM 557 (796)
T ss_pred EEEeccchHH
Confidence 9998775443
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-28 Score=225.51 Aligned_cols=317 Identities=19% Similarity=0.208 Sum_probs=230.8
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.|--..-.+. +.-+..+.||+|||+++.++++-....+. .+-+++|+..|+.|-++++..++..+|+++..
T Consensus 81 ~~~dvQlig~l~L~--~G~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~ 155 (830)
T PRK12904 81 RHFDVQLIGGMVLH--EGKIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGV 155 (830)
T ss_pred CCCccHHHhhHHhc--CCchhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 66677766655444 44599999999999999998863333333 68899999999999999999999999999999
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEechhHhhccC----------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSL------RPDYIKMFVLDEADEMLSRG---------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~~------~~~~~~~viiDE~H~~~~~~---------------- 154 (369)
+.++.+........ .++|+++|+..| +.+++.... ....+.++|+||++.+.=..
T Consensus 156 i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~ 233 (830)
T PRK12904 156 ILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE 233 (830)
T ss_pred EcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccH
Confidence 99988876665543 489999999999 777776542 24568899999999865100
Q ss_pred cHHHHHHHHhhCCc------------------------------------------------------------------
Q 017573 155 FKDQIYDIFQLLPA------------------------------------------------------------------ 168 (369)
Q Consensus 155 ~~~~~~~~~~~~~~------------------------------------------------------------------ 168 (369)
.......+...+..
T Consensus 234 ~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~ 313 (830)
T PRK12904 234 LYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGE 313 (830)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 01111111111100
Q ss_pred ---------------------------------------------------cCcEEEEEeeCChhHHHHHHHhcCCCEEE
Q 017573 169 ---------------------------------------------------KVQVGVFSATMPPEALEITRKFMNKPVRI 197 (369)
Q Consensus 169 ---------------------------------------------------~~~~i~~saT~~~~~~~~~~~~~~~~~~~ 197 (369)
-.++.+||+|...... .....++-.+..
T Consensus 314 V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~-E~~~iY~l~vv~ 392 (830)
T PRK12904 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE-EFREIYNLDVVV 392 (830)
T ss_pred EEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH-HHHHHhCCCEEE
Confidence 0457788888865443 344444444433
Q ss_pred EecCccccccceeEEEEEccchhhhHHHHHHHHHh--ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 017573 198 LVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 275 (369)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
.....+.........+ ..+...+...+...+.. ..+.++||||++++.++.+++.|.+.+++...+|++ ..+|+
T Consensus 393 IPtnkp~~r~d~~d~i--~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eRE 468 (830)
T PRK12904 393 IPTNRPMIRIDHPDLI--YKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHERE 468 (830)
T ss_pred cCCCCCeeeeeCCCeE--EECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHH
Confidence 3322222221111122 22334466677776654 456799999999999999999999999999999995 67888
Q ss_pred HHHHHHhcCCCcEEEEecCCcCCCCCCC--------------------------------------CcEEEEecCCCCcc
Q 017573 276 IIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------VSLVINYDLPTQPE 317 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~~~vi~~~~~~~~~ 317 (369)
..+..|..+...|+|||+++++|+|++- -=+||....+.|..
T Consensus 469 a~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrR 548 (830)
T PRK12904 469 AEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRR 548 (830)
T ss_pred HHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHH
Confidence 9999999999999999999999999863 23566677788888
Q ss_pred chhhhhcccccCCCceeEEEEeccccHHH
Q 017573 318 NYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 318 ~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
.-.|..||+||.|.+|.+-.|++-.|.-+
T Consensus 549 id~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 549 IDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred HHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 89999999999999999999988766543
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.9e-29 Score=231.39 Aligned_cols=315 Identities=21% Similarity=0.265 Sum_probs=234.1
Q ss_pred HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
..+|| .|-++|++++..+.++.+++++||||+|||.++..++..++..+. +++|.+|.++|.+|.++++.....+.
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh
Confidence 44676 899999999999999999999999999999999988888887766 79999999999999999987765443
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 171 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
...+...+|+.. ++.++.++|+|.+-|.+++.++......+..||+||+|.+.+......+..++-.+|+..+
T Consensus 190 ~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 334566677666 4566899999999999999999888888999999999999988888899999999999999
Q ss_pred EEEEEeeCChhHHHHHHHhc---CCCEEEEecCccccccceeEEEEEc-------cchh----h----------------
Q 017573 172 VGVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFYVNV-------EKEE----W---------------- 221 (369)
Q Consensus 172 ~i~~saT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~---------------- 221 (369)
++++|||.+ +..++..++. ..+..+.... ..+....+++..- +... .
T Consensus 263 ~v~LSATv~-N~~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 263 FVFLSATVP-NAEEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred EEEEeCCCC-CHHHHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 999999986 4445554443 2232222211 1111111111111 0000 0
Q ss_pred --------------------------hHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC-----------------
Q 017573 222 --------------------------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----------------- 258 (369)
Q Consensus 222 --------------------------~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~----------------- 258 (369)
....+...+.....-++++|+-++..|+..+..+...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 0011222222223347899999998888776666422
Q ss_pred ------------------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC--
Q 017573 259 ------------------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-- 312 (369)
Q Consensus 259 ------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-- 312 (369)
...++..|+++=+..+..+...|..|-.+|+++|..++.|+|+|. +.|++...
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K 498 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSK 498 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEE
Confidence 113568889999999999999999999999999999999999985 44444332
Q ss_pred -------CCCccchhhhhcccccCCCc--eeEEEEecc
Q 017573 313 -------PTQPENYLHRIGRSGRFGRK--GVAINFVTR 341 (369)
Q Consensus 313 -------~~~~~~~~Q~~GR~~R~~~~--~~~~~~~~~ 341 (369)
.-++.+|.|+.||+||.|-+ |.+++...+
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 23678999999999999866 777777443
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.4e-28 Score=237.10 Aligned_cols=304 Identities=19% Similarity=0.253 Sum_probs=204.9
Q ss_pred hhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc-cccCcEEEEEECCc
Q 017573 24 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG-DYLGVKVHACVGGT 102 (369)
Q Consensus 24 ~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~-~~~~~~v~~~~~~~ 102 (369)
.+++..+..++.++|+|+||||||...-..++. ...+. ..++++.-|++.-+...++.+.+.. ...|..|.+.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE-LGRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-cCCCC-CceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 467777777889999999999999864323332 22222 2256666688877777776665533 33344454433222
Q ss_pred chHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhH-hhccCcHHH-HHHHHhhCCccCcEEEEEeeCC
Q 017573 103 SVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKDQ-IYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 103 ~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~~~~~-~~~~~~~~~~~~~~i~~saT~~ 180 (369)
.. ...+..|.++|+..|...+.... .+..+++||+||+|+ ..+.++.-. +..++... +..++++||||+.
T Consensus 151 ~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld 222 (1283)
T TIGR01967 151 DQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATID 222 (1283)
T ss_pred cc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcC
Confidence 21 13457899999999998887654 467789999999995 555554432 34444333 4678999999996
Q ss_pred hhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccch-----hhhHHHHHHHHH---hccCCCeEEEeCCHhhHHHHH
Q 017573 181 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE-----EWKLETLCDLYE---TLAITQSVIFVNTRRKVDWLT 252 (369)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~k~lv~~~~~~~~~~~~ 252 (369)
. ..+...+...++ +.+..... .+...|...... ....+.+...+. ....+.+|||+++..+++.++
T Consensus 223 ~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~ 296 (1283)
T TIGR01967 223 P--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAA 296 (1283)
T ss_pred H--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHH
Confidence 4 344444444443 33322221 223333322111 112232322222 124579999999999999999
Q ss_pred HHHhhCC---CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC---------------
Q 017573 253 DKMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--------------- 314 (369)
Q Consensus 253 ~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~--------------- 314 (369)
+.|.+.+ ..+..+||+++.+++.++++.+ +..+|+++|+++++|+|+|++++||..+.+.
T Consensus 297 ~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~ 374 (1283)
T TIGR01967 297 EILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPI 374 (1283)
T ss_pred HHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCC
Confidence 9998764 3588899999999999986543 2468999999999999999999999988432
Q ss_pred ---CccchhhhhcccccCCCceeEEEEeccccHHH
Q 017573 315 ---QPENYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 315 ---~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
|..++.||.||+||.+ +|.||.+++..+...
T Consensus 375 ~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 375 EPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 4568999999999996 999999998776543
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.9e-27 Score=218.19 Aligned_cols=146 Identities=23% Similarity=0.314 Sum_probs=124.6
Q ss_pred CCCCHHHHHHHH-----hCCCCCC---cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 1 MGLQENLLRGIY-----AYGFEKP---SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 1 ~~l~~~i~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
|++.+++.+.+. ..|+..| +|+|.+++..+..+++++.+++||+|||++++++++..+..+. .++||+|
T Consensus 67 fal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IVTp 143 (970)
T PRK12899 67 YGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLVTV 143 (970)
T ss_pred hCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEEeC
Confidence 345666666665 5788888 9999999999999999999999999999999999997765443 5899999
Q ss_pred CHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCCCCCC-------CccEEEE
Q 017573 73 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSLRPD-------YIKMFVL 144 (369)
Q Consensus 73 ~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~~~~~-------~~~~vii 144 (369)
++.|+.|..+++..+...+++++..+.|+.....+.... .++|+|+||..| +.+++.+.+..+ .+.++|+
T Consensus 144 TrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~II 221 (970)
T PRK12899 144 NDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAII 221 (970)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEE
Confidence 999999999999999998999999999998877665444 489999999999 999988766655 4589999
Q ss_pred echhHhh
Q 017573 145 DEADEML 151 (369)
Q Consensus 145 DE~H~~~ 151 (369)
||++++.
T Consensus 222 DEADsmL 228 (970)
T PRK12899 222 DEVDSIL 228 (970)
T ss_pred echhhhh
Confidence 9999865
No 100
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.96 E-value=1.9e-26 Score=215.42 Aligned_cols=299 Identities=16% Similarity=0.145 Sum_probs=183.1
Q ss_pred CcHhhhhhhhcccc----------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 19 PSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~----------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
++++|.+|+..+.+ .++.+++++||||||++++..+...+. ....+++|+|+|+..|..|+.+.|..+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 88999999987642 257999999999999998766655443 3344589999999999999999999875
Q ss_pred cccCcEEEEEECCcchHHHHHHH-ccCCcEEEeccHHHHHHHHcC--CCCCCCc-cEEEEechhHhhccCcHHHHHHHHh
Q 017573 89 DYLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ--SLRPDYI-KMFVLDEADEMLSRGFKDQIYDIFQ 164 (369)
Q Consensus 89 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~~iiv~t~~~l~~~~~~~--~~~~~~~-~~viiDE~H~~~~~~~~~~~~~~~~ 164 (369)
... + ............+ .....|+|+|.++|...+... ....... .+||+||||+.....+. ..+..
T Consensus 318 ~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~---~~l~~ 388 (667)
T TIGR00348 318 KDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA---KNLKK 388 (667)
T ss_pred CCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH---HHHHh
Confidence 321 1 1111222222222 234689999999998644321 1111111 38999999986433222 22224
Q ss_pred hCCccCcEEEEEeeCChhHHHHHHHh----cCCCEEEEecCccccccceeEEEEEcc-------ch--------------
Q 017573 165 LLPAKVQVGVFSATMPPEALEITRKF----MNKPVRILVKRDELTLEGIKQFYVNVE-------KE-------------- 219 (369)
Q Consensus 165 ~~~~~~~~i~~saT~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------------- 219 (369)
.++ +...+++||||........... ++.++......+......+..+.+... ..
T Consensus 389 ~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (667)
T TIGR00348 389 ALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLP 467 (667)
T ss_pred hCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhh
Confidence 454 5679999999963211111111 122222221111111111111110000 00
Q ss_pred ----hh--------------------hHHHHH-HHH----Hhc--cCCCeEEEeCCHhhHHHHHHHHhhCC-----CeeE
Q 017573 220 ----EW--------------------KLETLC-DLY----ETL--AITQSVIFVNTRRKVDWLTDKMRSRD-----HTVS 263 (369)
Q Consensus 220 ----~~--------------------~~~~l~-~~~----~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~-----~~~~ 263 (369)
.. ..+.+. .++ ... ...|++|+|.++.+|..+++.|.+.. ....
T Consensus 468 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~v 547 (667)
T TIGR00348 468 ERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAI 547 (667)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeE
Confidence 00 001111 111 111 23799999999999999998886542 3445
Q ss_pred EecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhh
Q 017573 264 ATHGDMDQN---------------------TRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 321 (369)
Q Consensus 264 ~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q 321 (369)
.+++..+.+ ....++++|++ ++++++|+++++.+|+|.|.++++++..+..+. .++|
T Consensus 548 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQ 626 (667)
T TIGR00348 548 VMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQ 626 (667)
T ss_pred EecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHH
Confidence 555543322 12468888876 678999999999999999999999988877754 6899
Q ss_pred hhcccccC
Q 017573 322 RIGRSGRF 329 (369)
Q Consensus 322 ~~GR~~R~ 329 (369)
++||+.|.
T Consensus 627 ai~R~nR~ 634 (667)
T TIGR00348 627 AIARTNRI 634 (667)
T ss_pred HHHHhccc
Confidence 99999994
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=1.2e-27 Score=188.33 Aligned_cols=164 Identities=26% Similarity=0.461 Sum_probs=140.1
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 99 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 99 (369)
+|+|.++++.+.+++++++.+|||+|||++++.+++..+..+ ...++++++|+++|++|..+.+.++....+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888776 4448999999999999999999999887778888888
Q ss_pred CCcchH-HHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCc--cCcEEEEE
Q 017573 100 GGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA--KVQVGVFS 176 (369)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~--~~~~i~~s 176 (369)
++.... .....+.++++|+|+||++|...+........+++++|+||+|.+..+.+...+..+...+.. +.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 888755 444445567999999999999999886666667999999999999987777788888777633 58899999
Q ss_pred eeCChhHH
Q 017573 177 ATMPPEAL 184 (369)
Q Consensus 177 aT~~~~~~ 184 (369)
||++.+.+
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985543
No 102
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.1e-26 Score=206.76 Aligned_cols=331 Identities=18% Similarity=0.174 Sum_probs=225.2
Q ss_pred CCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..|.+||++.++.+. ++...|+-..+|-|||...+..+......+.-..++|||||. .++.||.++|..|.. .
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p--~ 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWP--P 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCc--c
Confidence 458899999998876 467899999999999966443333222222333489999997 788999999999876 4
Q ss_pred cEEEEEECCcchHH---------HH----HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 93 VKVHACVGGTSVRE---------DQ----RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 93 ~~v~~~~~~~~~~~---------~~----~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
++|.++++...... .. +....+..|+++|++.|.-. ...+....|+++|+||.|.+.+.+ ..+
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~i 356 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKI 356 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHH
Confidence 67777776555211 11 11223567999999888532 223444558999999999996665 556
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcC--C----------------CEEEEec---------------------
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMN--K----------------PVRILVK--------------------- 200 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~----------------~~~~~~~--------------------- 200 (369)
...+..++.. +.+.+|+||-.+.......++. . |+..=..
T Consensus 357 slackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~l 435 (923)
T KOG0387|consen 357 SLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDL 435 (923)
T ss_pred HHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 6666666544 4567899997553332221110 0 0000000
Q ss_pred ----------Cc--cccccceeEEEEEcc---------------------------------------------------
Q 017573 201 ----------RD--ELTLEGIKQFYVNVE--------------------------------------------------- 217 (369)
Q Consensus 201 ----------~~--~~~~~~~~~~~~~~~--------------------------------------------------- 217 (369)
.+ ....+.....++.+.
T Consensus 436 I~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~ 515 (923)
T KOG0387|consen 436 ISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDED 515 (923)
T ss_pred hHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccc
Confidence 00 000000001111100
Q ss_pred -----------chhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHh-hCCCeeEEecCCCCHHHHHHHHHHHhc
Q 017573 218 -----------KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMR-SRDHTVSATHGDMDQNTRDIIMREFRS 283 (369)
Q Consensus 218 -----------~~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~ 283 (369)
...-++..+..++..+ .+.++|+|..++.....+...|. ..++.+..+.|..+...|..+++.|++
T Consensus 516 ~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 516 EKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred cccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcC
Confidence 0111566677766554 44599999999999999999998 578999999999999999999999998
Q ss_pred CCC-c-EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCcee--EEEEeccccHHHHHHHHHHhc
Q 017573 284 GSS-R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 284 ~~~-~-vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 355 (369)
++. . +|++|.+.+-|+|+.+++.||+++|.||+.+=.|+.-|+.|.|++.. +|-+.+....+....-.+.++
T Consensus 596 ~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 596 DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 764 4 55678899999999999999999999999999999999999998754 555566666655544444443
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=214.50 Aligned_cols=334 Identities=18% Similarity=0.230 Sum_probs=234.1
Q ss_pred HHHHHhCCCCCCcHhhhhhh--hccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 8 LRGIYAYGFEKPSAIQQRGI--VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 8 ~~~l~~~~~~~~~~~Q~~~~--~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
.-.....|...++.+|.+.+ +.+.++++.+..+||+.|||+++-+.++..+....+ .++.+.|..+.+..-...+.
T Consensus 213 ~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 213 HLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHHHHhhhh
Confidence 33446678899999999987 567789999999999999999998888776554332 79999999999998889999
Q ss_pred HhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc--CCCCCCCccEEEEechhHhhccCcHHHHHHHH
Q 017573 86 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 163 (369)
Q Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~--~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~ 163 (369)
.+....|+.+....|..++.... .+.++.|+|.|+-...... .......+++||+||.|.+.+.+....+..++
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l 366 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLL 366 (1008)
T ss_pred hhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHH
Confidence 99999999998888766644432 3468999999987654433 11234457899999999998877666666555
Q ss_pred hhC-----CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccce--eEEEEEccchhhhHHHHH---------
Q 017573 164 QLL-----PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI--KQFYVNVEKEEWKLETLC--------- 227 (369)
Q Consensus 164 ~~~-----~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~--------- 227 (369)
... ....|+++||||.+ +. .+...++...+.....++....+.+ ....+... .......+.
T Consensus 367 ~k~~y~~~~~~~~iIGMSATi~-N~-~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~ 443 (1008)
T KOG0950|consen 367 AKILYENLETSVQIIGMSATIP-NN-SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGD 443 (1008)
T ss_pred HHHHHhccccceeEeeeecccC-Ch-HHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhccc
Confidence 443 23467999999986 33 3344444432222211111111111 11111111 111111111
Q ss_pred -------HHHHh-ccC-CCeEEEeCCHhhHHHHHHHHhhC--------------------------------------CC
Q 017573 228 -------DLYET-LAI-TQSVIFVNTRRKVDWLTDKMRSR--------------------------------------DH 260 (369)
Q Consensus 228 -------~~~~~-~~~-~k~lv~~~~~~~~~~~~~~l~~~--------------------------------------~~ 260 (369)
.+... .+. ..+||||++++.++.++..+... ..
T Consensus 444 ~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~ 523 (1008)
T KOG0950|consen 444 EDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPY 523 (1008)
T ss_pred CCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccc
Confidence 11111 122 35999999999988876555322 23
Q ss_pred eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec----CCCCccchhhhhcccccCCC--cee
Q 017573 261 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD----LPTQPENYLHRIGRSGRFGR--KGV 334 (369)
Q Consensus 261 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~----~~~~~~~~~Q~~GR~~R~~~--~~~ 334 (369)
.+++.|++++.++|+.+...|++|...|+.+|+.+..|+|.|.-++++-.. ...+..+|.||+||+||+|- .|.
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~Gd 603 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGD 603 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcc
Confidence 588999999999999999999999999999999999999999777766432 23467799999999999974 499
Q ss_pred EEEEeccccHHHHHHH
Q 017573 335 AINFVTRDDERMLFDI 350 (369)
Q Consensus 335 ~~~~~~~~~~~~~~~~ 350 (369)
+++++.+.+.+....+
T Consensus 604 siLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 604 SILIIKSSEKKRVREL 619 (1008)
T ss_pred eEEEeeccchhHHHHH
Confidence 9999999998766533
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=3.3e-26 Score=202.96 Aligned_cols=318 Identities=19% Similarity=0.195 Sum_probs=219.6
Q ss_pred CCCcHhhhhhhhcccc----CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..+++||.+.++.+.. |-++|+...+|-|||+..+..+..........+..||+||...| .+|.+++++|++ +
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTP--S 242 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCC--C
Confidence 4799999999988763 67899999999999977644333322223323389999998666 458889999987 5
Q ss_pred cEEEEEECCcchHHH--HH-HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCcc
Q 017573 93 VKVHACVGGTSVRED--QR-ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 169 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~--~~-~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~ 169 (369)
+++...+|+...... ++ +.....+|+|||++..... ...+..-.|.++||||+|++.+. ...+..+++.+...
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKTD 318 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHhccc
Confidence 677888887753322 22 2335799999999998653 22233345899999999999654 45566777777654
Q ss_pred CcEEEEEeeCChhHHHHHH------------------Hhc-----------------------------------CCC--
Q 017573 170 VQVGVFSATMPPEALEITR------------------KFM-----------------------------------NKP-- 194 (369)
Q Consensus 170 ~~~i~~saT~~~~~~~~~~------------------~~~-----------------------------------~~~-- 194 (369)
. .+++|+||-.+...... .|+ .+.
T Consensus 319 n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 319 N-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred c-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 4 57789998533221110 000 000
Q ss_pred EEEEecCc--------------------cc------------------cccceeEEEEE---------ccchhhhHHHHH
Q 017573 195 VRILVKRD--------------------EL------------------TLEGIKQFYVN---------VEKEEWKLETLC 227 (369)
Q Consensus 195 ~~~~~~~~--------------------~~------------------~~~~~~~~~~~---------~~~~~~~~~~l~ 227 (369)
+.+.+.-. .. ..+.+....-. +-....++..|.
T Consensus 398 ~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLD 477 (971)
T KOG0385|consen 398 LIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLD 477 (971)
T ss_pred eeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHH
Confidence 00000000 00 00000000000 001122556666
Q ss_pred HHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEecCCcCCCCCC
Q 017573 228 DLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLARGIDVQ 302 (369)
Q Consensus 228 ~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~ 302 (369)
.++... .+.++|||..-.....-+..++.-+++....+.|.++.++|...++.|+..+ .-+|++|.+.+.|+|+.
T Consensus 478 kLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 478 KLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred HHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 666554 4469999999999999999999888999999999999999999999998755 23678899999999999
Q ss_pred CCcEEEEecCCCCccchhhhhcccccCCCceeEEE--Eeccc
Q 017573 303 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN--FVTRD 342 (369)
Q Consensus 303 ~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~--~~~~~ 342 (369)
.+++||+++..||+..=.|+.-|++|.|+...|.+ +++.+
T Consensus 558 aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 558 AADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 99999999999999999999999999998865555 45554
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.1e-26 Score=211.11 Aligned_cols=316 Identities=18% Similarity=0.223 Sum_probs=221.5
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.|- +-.+.-.+.-+..++||.|||+++.++++.....+. .+.||+|+..|+.+-.+++..+...+|+++..
T Consensus 82 ~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3444444 444444567799999999999999998886665554 69999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcC-CCCC-----CCccEEEEechhHhhccC----------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIKMFVLDEADEMLSRG---------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~-~~~~-----~~~~~viiDE~H~~~~~~---------------- 154 (369)
+.++....... ..-.++|+++|+..| +.+++.+ .... ..+.++|+||++.+.-..
T Consensus 157 i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 98877754332 223589999999999 7777765 3332 558899999999865211
Q ss_pred cHHHHHHHHhhCC-------------------cc----------------------------------------------
Q 017573 155 FKDQIYDIFQLLP-------------------AK---------------------------------------------- 169 (369)
Q Consensus 155 ~~~~~~~~~~~~~-------------------~~---------------------------------------------- 169 (369)
....+..+...+. ..
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 0000000000000 00
Q ss_pred ----------------------------------------------------------------------CcEEEEEeeC
Q 017573 170 ----------------------------------------------------------------------VQVGVFSATM 179 (369)
Q Consensus 170 ----------------------------------------------------------------------~~~i~~saT~ 179 (369)
.++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 3455666666
Q ss_pred ChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH-Hhc-cCCCeEEEeCCHhhHHHHHHHHhh
Q 017573 180 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETL-AITQSVIFVNTRRKVDWLTDKMRS 257 (369)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lv~~~~~~~~~~~~~~l~~ 257 (369)
.....+ ....++-.+.......+.........++ .+...+...+.+-+ ..+ .+.++||||.+++.++.+++.|..
T Consensus 395 ~te~~E-f~~iY~l~Vv~IPTnkp~~R~d~~d~iy--~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 395 DTEAFE-FQHIYGLDTVVVPTNRPMVRKDMADLVY--LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred hHHHHH-HHHHhCCCEEECCCCCCccceeCCCcEE--eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 544332 3333333333322222222111111222 12223433443333 322 456999999999999999999999
Q ss_pred CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC-----------------------------------
Q 017573 258 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ----------------------------------- 302 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~----------------------------------- 302 (369)
.+++...+|++.+..++..+.+.|+.|. |+|||+++++|.|+.
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999988 999999999999986
Q ss_pred --CCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 303 --QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 303 --~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+-=+||....+.|...=.|..||+||.|.+|.+..|++-.|.-
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHH
Confidence 2235777777888888899999999999999999999877653
No 106
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.95 E-value=9.6e-27 Score=209.30 Aligned_cols=295 Identities=19% Similarity=0.249 Sum_probs=198.5
Q ss_pred CCCcHhhhhhhhcccc----C-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 17 EKPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~----~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
..+|.||..|+..+.+ | +.++++++||+|||.+|+..+...+..+ ..+++|+++-+++|++|....+..+...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~-~~KRVLFLaDR~~Lv~QA~~af~~~~P~- 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG-WVKRVLFLADRNALVDQAYGAFEDFLPF- 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcc-hhheeeEEechHHHHHHHHHHHHHhCCC-
Confidence 5699999999987764 3 5699999999999999865555444444 4449999999999999999999888665
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcC-----CCCCCCccEEEEechhHhhccCcHHHHHHHHhhC
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 166 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~-----~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 166 (369)
+-....+.+... .+.+.|+++|++++....... .+....||+||+||||+-....+ ..++.++
T Consensus 242 ~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~----~~I~dYF 309 (875)
T COG4096 242 GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEW----SSILDYF 309 (875)
T ss_pred ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhh----HHHHHHH
Confidence 223333322221 125799999999998877665 23334589999999998654443 3555555
Q ss_pred CccCcEEEEEeeCChhHHHHHHHhc-CCCEEEEec----------------------Cccccccce-------------e
Q 017573 167 PAKVQVGVFSATMPPEALEITRKFM-NKPVRILVK----------------------RDELTLEGI-------------K 210 (369)
Q Consensus 167 ~~~~~~i~~saT~~~~~~~~~~~~~-~~~~~~~~~----------------------~~~~~~~~~-------------~ 210 (369)
.+. .+++||||..........++ +.|+..+.. .+...+... .
T Consensus 310 dA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 DAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred HHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 432 34559999765554444555 333222211 111111110 0
Q ss_pred -EEE---------EEccchhhhHHHHHHHHHhcc----CCCeEEEeCCHhhHHHHHHHHhhCCC-----eeEEecCCCCH
Q 017573 211 -QFY---------VNVEKEEWKLETLCDLYETLA----ITQSVIFVNTRRKVDWLTDKMRSRDH-----TVSATHGDMDQ 271 (369)
Q Consensus 211 -~~~---------~~~~~~~~~~~~l~~~~~~~~----~~k~lv~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~ 271 (369)
+.+ ............+.+.+...+ .+|+||||.+..+|+.+...|.+... -+..+.++...
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~ 467 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ 467 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh
Confidence 000 000011113344555555422 35999999999999999999987733 35667675333
Q ss_pred HHHHHHHHHHhc--CCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC
Q 017573 272 NTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 272 ~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
-...++.|.. .-.+|.++++++.+|+|+|.+.+++++....|...|.||+||+-|.
T Consensus 468 --~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 468 --AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred --hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3345555544 3356889999999999999999999999999999999999999996
No 107
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.95 E-value=2.2e-25 Score=202.92 Aligned_cols=318 Identities=19% Similarity=0.158 Sum_probs=208.4
Q ss_pred CCCcHhhhhhhhcccc----------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCC----ccEEEEcCCHHHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ----CQALVLAPTRELAQQIEK 82 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~----------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~----~~~liv~P~~~l~~q~~~ 82 (369)
..+||+|++++..+.+ ...+++...+|+|||+..+..+...+...+.+ .++|||+|. +|+..|.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 3589999999988764 25689999999999999888888887776551 389999997 89999999
Q ss_pred HHHHhccccCcEEEEEECCcch-HHH-HHHH-----ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 83 VMRALGDYLGVKVHACVGGTSV-RED-QRIL-----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~-----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
+|.+|.....+.....++.... ... ..++ .-..-|.+.+++.+...... +....++++|+||.|+..+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 9999987656666666666653 000 0111 11346888899999866665 44556899999999998544
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcC--C----------------CE----------------------
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN--K----------------PV---------------------- 195 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~----------------~~---------------------- 195 (369)
...+...+..+. ..+.|++|+||-.+.....-..+. . +.
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 355556666665 344677899986432211100000 0 00
Q ss_pred --------EEEec-CccccccceeEEEEEccchhh---------------------------------------------
Q 017573 196 --------RILVK-RDELTLEGIKQFYVNVEKEEW--------------------------------------------- 221 (369)
Q Consensus 196 --------~~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 221 (369)
..... .-....+....+.+.+.....
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 00000 000011122222222222111
Q ss_pred ----------------------------hHHHHHHHHHhc---cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCC
Q 017573 222 ----------------------------KLETLCDLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 270 (369)
Q Consensus 222 ----------------------------~~~~l~~~~~~~---~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (369)
++..|..++... ...++.+..|.....+-+...++-.|..+..++|.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 111112221111 1112333334444444445555555899999999999
Q ss_pred HHHHHHHHHHHhcCCC--cEE-EEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEec
Q 017573 271 QNTRDIIMREFRSGSS--RVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 340 (369)
Q Consensus 271 ~~~r~~~~~~f~~~~~--~vl-i~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~ 340 (369)
..+|..+++.|++... .|+ .++.+.++|+++-+++.+|++|+.||++.-.|+++|+.|.|++..|++|--
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999987432 444 566799999999999999999999999999999999999999988777654
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.95 E-value=3.9e-26 Score=215.51 Aligned_cols=323 Identities=18% Similarity=0.228 Sum_probs=209.5
Q ss_pred CCCcHhhhhhhhccccC---C-cEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 17 EKPSAIQQRGIVPFCKG---L-DVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~---~-~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
...++.|..+++..... . .+++.||||+|||.+++.++...+.. .....+++++.|.+++++++.+.+.++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 34589999999887753 4 78999999999999999988888776 3345599999999999999999999876544
Q ss_pred CcEEEEEECCcchHHHHHH--------------HccCCcEEEeccHHHHHH-HHcCCCC-C--CCccEEEEechhHhhcc
Q 017573 92 GVKVHACVGGTSVREDQRI--------------LQAGVHVVVGTPGRVFDM-LRRQSLR-P--DYIKMFVLDEADEMLSR 153 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~--------------~~~~~~iiv~t~~~l~~~-~~~~~~~-~--~~~~~viiDE~H~~~~~ 153 (369)
+......++.......... ...-..+.++++...... ....... . -..+++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 3333212322221111100 000122333333333321 1111111 0 11368999999998766
Q ss_pred CcHHHHHHHHhhCC-ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccc---ccccee-EEEEEccchhhhHHHHHH
Q 017573 154 GFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL---TLEGIK-QFYVNVEKEEWKLETLCD 228 (369)
Q Consensus 154 ~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~~ 228 (369)
.....+..+...+. .+..+++||||+|+...+.....+............. ...... .......... .......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~ 432 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIEL 432 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhhc
Confidence 33444444443332 3677999999999988887777776654433321100 000000 0000000000 0011112
Q ss_pred HHHh-ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEecCCcCCCCCCC
Q 017573 229 LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDVQQ 303 (369)
Q Consensus 229 ~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~ 303 (369)
.... ..+++++|.||++..|.++++.|+..+.++..+|+.+...+|.++++... .++..|+|+|++++.|+|+ +
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-d 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-D 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-c
Confidence 2222 24579999999999999999999999888999999999999988888654 4567899999999999999 4
Q ss_pred CcEEEEecCCCCccchhhhhcccccCC--CceeEEEEecccc
Q 017573 304 VSLVINYDLPTQPENYLHRIGRSGRFG--RKGVAINFVTRDD 343 (369)
Q Consensus 304 ~~~vi~~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~ 343 (369)
.+.+|-- +.....++||+||++|.| ..|.++++.....
T Consensus 512 fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 512 FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 6666533 233788999999999999 5677777777553
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.5e-25 Score=200.85 Aligned_cols=286 Identities=21% Similarity=0.300 Sum_probs=202.3
Q ss_pred HHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 9 RGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 9 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
+-+.+.....|+..|+-....+..|+++-+.||||.|||...++..+....+++ ++++|+||+.|+.|..+.+.++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgk---r~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGK---RVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCC---eEEEEecCHHHHHHHHHHHHHHH
Confidence 334343334999999999999999999999999999999776655554444443 89999999999999999999987
Q ss_pred cccC-cEEEE-EECCcchHHH----HHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC--------
Q 017573 89 DYLG-VKVHA-CVGGTSVRED----QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-------- 154 (369)
Q Consensus 89 ~~~~-~~v~~-~~~~~~~~~~----~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-------- 154 (369)
...+ ..+.. .|+..+.... .++..++.||+|+|.+.+...+..- ...+||++++|++|.+...+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHH
Confidence 6655 44444 4444333332 3444568999999999888776662 23468999999999876322
Q ss_pred ---cHHH-----------------------HHHHHhh--------CCccCcEEEEEeeCChh--HHHHHHHhcCCCEEEE
Q 017573 155 ---FKDQ-----------------------IYDIFQL--------LPAKVQVGVFSATMPPE--ALEITRKFMNKPVRIL 198 (369)
Q Consensus 155 ---~~~~-----------------------~~~~~~~--------~~~~~~~i~~saT~~~~--~~~~~~~~~~~~~~~~ 198 (369)
+.+. ..+.... -.+..++++.|||..+. -..+.+.+++-.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---- 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---- 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----
Confidence 1110 0011000 12346788999997643 233444544422
Q ss_pred ecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCC---HhhHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 017573 199 VKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT---RRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 275 (369)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
+........++...+... .....+.++++... ..+|||++. .+.++.++++|+..|+++..+++. +.
T Consensus 304 vG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 304 VGSGGEGLRNIVDIYVES----ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred cCccchhhhheeeeeccC----ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 122233334444444433 34555666666654 378999999 999999999999999999999884 37
Q ss_pred HHHHHHhcCCCcEEEEec----CCcCCCCCC-CCcEEEEecCC
Q 017573 276 IIMREFRSGSSRVLITTD----LLARGIDVQ-QVSLVINYDLP 313 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~----~~~~G~d~~-~~~~vi~~~~~ 313 (369)
+.++.|..|++++||++. .+.+|+|+| .++.+|+++.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 789999999999999864 889999999 48889988866
No 110
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.9e-26 Score=194.33 Aligned_cols=314 Identities=17% Similarity=0.171 Sum_probs=216.5
Q ss_pred CCCCCcHhhhhhhhccccC---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 15 GFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
+-.++||||++.+..+.-+ ++.+|+.|||+|||++.+-++.. + ++.+|++|.+...++||..+|..|...-
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-----kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-----cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 5578999999999998865 67899999999999886544332 1 2279999999999999999999998766
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc--------CCCCCCCccEEEEechhHhhccCcHHHHHHHH
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 163 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~--------~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~ 163 (369)
+..+...+.+.+ .....++.|+|+|+.++..--.+ ..+....|+++++||+|.+....|.+.+.-+.
T Consensus 373 d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~ 447 (776)
T KOG1123|consen 373 DDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQ 447 (776)
T ss_pred ccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHH
Confidence 677777776554 22356789999999877321111 01223448999999999887777776666666
Q ss_pred hhCCccCcEEEEEeeCChhHHHHHH------------Hhc---CCC--E------EEEecCc----cccc---cceeEEE
Q 017573 164 QLLPAKVQVGVFSATMPPEALEITR------------KFM---NKP--V------RILVKRD----ELTL---EGIKQFY 213 (369)
Q Consensus 164 ~~~~~~~~~i~~saT~~~~~~~~~~------------~~~---~~~--~------~~~~~~~----~~~~---~~~~~~~ 213 (369)
..+ .+++|||+-.+...... .|+ .+. . ++..... ++.. ......+
T Consensus 448 aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLy 522 (776)
T KOG1123|consen 448 AHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLY 522 (776)
T ss_pred HHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheee
Confidence 665 48999997433221110 000 000 0 0100000 0000 1112233
Q ss_pred EEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEe
Q 017573 214 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITT 292 (369)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t 292 (369)
+..+..-...+.|.++..+ .++|+|||..+.--...++-.|.+ -+++|..++.+|.+|++.|+.. .++.++.+
T Consensus 523 vMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS 596 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLS 596 (776)
T ss_pred ecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEe
Confidence 3333333345777777766 668999999999888888877644 4788999999999999999854 57889999
Q ss_pred cCCcCCCCCCCCcEEEEecCC-CCccchhhhhcccccCCCc------eeEEEEeccccHHHHHHH
Q 017573 293 DLLARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRK------GVAINFVTRDDERMLFDI 350 (369)
Q Consensus 293 ~~~~~G~d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~------~~~~~~~~~~~~~~~~~~ 350 (369)
.+....+|+|.++++|..... .|-.+-.||.||..|..+. .--+.+++.+..+++.+-
T Consensus 597 KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YSt 661 (776)
T KOG1123|consen 597 KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYST 661 (776)
T ss_pred eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhh
Confidence 999999999999999977654 4667889999999986322 234555556666655443
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.9e-24 Score=200.86 Aligned_cols=309 Identities=17% Similarity=0.261 Sum_probs=216.4
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH-hccccCcEEEEE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 98 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~v~~~ 98 (369)
+....+++.++.+++-++|.||||+|||...-..+++.-. ..+.++.+.=|++--+...++.+.+ +....|-.|.+.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 4556677788888999999999999999876555554432 2223777778999777777766654 333345555554
Q ss_pred ECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-cc-CcHHHHHHHHhhCCccCcEEEEE
Q 017573 99 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SR-GFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~-~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
...+. ....+..|-++|...|.+.+..... ++.+++||+||+|+=+ +. -....+..+....++..++|.||
T Consensus 130 iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 130 IRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred EEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 43322 1234578999999999999887664 6778999999999722 11 12234445556666678899999
Q ss_pred eeCChhHHHHHHHhcC-CCEEEEecCccccccceeEEEEEccchhh-hHHHHHHHH---HhccCCCeEEEeCCHhhHHHH
Q 017573 177 ATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEW-KLETLCDLY---ETLAITQSVIFVNTRRKVDWL 251 (369)
Q Consensus 177 aT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~---~~~~~~k~lv~~~~~~~~~~~ 251 (369)
||...+ .+. .+++ -|+.... ...+ .++..|........ ..+.+...+ .....+.+|||.+...+.+..
T Consensus 203 ATld~~--rfs-~~f~~apvi~i~-GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 203 ATLDAE--RFS-AYFGNAPVIEIE-GRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred cccCHH--HHH-HHcCCCCEEEec-CCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 998543 333 4444 4443332 2211 22333322222222 333333333 334568999999999999999
Q ss_pred HHHHhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC---------------
Q 017573 252 TDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------------- 312 (369)
Q Consensus 252 ~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------------- 312 (369)
++.|.+ ....+..+||.++.+++.++++-...|.-+|+++|+++++++.+|+++.||.-+.
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999997 3467999999999999999888777776669999999999999999999997654
Q ss_pred ---CCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 313 ---PTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 313 ---~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+-|-.+..||.||+||. .+|.||-+++..+..
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 356 ETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred eEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 23567789999999999 689999999985443
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.4e-24 Score=182.78 Aligned_cols=174 Identities=23% Similarity=0.253 Sum_probs=130.0
Q ss_pred cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc-cCCCeEEEeCCHhh
Q 017573 169 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRK 247 (369)
Q Consensus 169 ~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~ 247 (369)
..|++++||||.+-..+.. -+.-+.......... .+.....+.....-+.+.++.... .+.++||-+-+++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLl----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLL----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCCC----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 4789999999975322211 111121222222221 112222222233344445554433 45799999999999
Q ss_pred HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC-----CCCccchhhh
Q 017573 248 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLHR 322 (369)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~~~~~~~Q~ 322 (369)
|+.+.++|...|+++..+|++.+.-+|.+++...+.|.++|||+.+.+-+|+|+|.++.|.+++. ..|..+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875 5688999999
Q ss_pred hcccccCCCceeEEEEeccccHHHHHHH
Q 017573 323 IGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 323 ~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
+|||.|. -.|.++.|.+.-...+-+.+
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 9999996 56999999998766655444
No 113
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.93 E-value=2.9e-23 Score=175.93 Aligned_cols=326 Identities=14% Similarity=0.164 Sum_probs=221.5
Q ss_pred CCCcHhhhhhhhccc-cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 17 EKPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
..+-|+|++.+...+ .|+++++..++|-|||..++..+......+ ..|||||. ++...|++.+.+|.....- +
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPA-svrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhcccccc-e
Confidence 457799999998765 578999999999999998765444443333 69999997 6778899999999876533 4
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
.+..++..... .+.....|.|.+++.+..+-.. +....+.++|+||+|++.+.. ......+...+....++|++
T Consensus 271 ~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEe
Confidence 44444333221 1344567999999998654332 233347999999999987654 34455555666667789999
Q ss_pred EeeCC-------------------hhHHHHHHHhcCCC-EEEEecCc--------------------------cccccce
Q 017573 176 SATMP-------------------PEALEITRKFMNKP-VRILVKRD--------------------------ELTLEGI 209 (369)
Q Consensus 176 saT~~-------------------~~~~~~~~~~~~~~-~~~~~~~~--------------------------~~~~~~~ 209 (369)
|+||. ++..++..++|... ..+..+.. .-.++.-
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr 424 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR 424 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99984 11222333333211 11110000 0001111
Q ss_pred eEEEEEccch------------------------------------hhhHHHHHHHHHhc------cCCCeEEEeCCHhh
Q 017573 210 KQFYVNVEKE------------------------------------EWKLETLCDLYETL------AITQSVIFVNTRRK 247 (369)
Q Consensus 210 ~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~------~~~k~lv~~~~~~~ 247 (369)
+...+..... ..+...+.+.+..+ +..|.+||+-...-
T Consensus 425 r~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 425 REVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred eEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 1111111110 01334444444431 44589999999999
Q ss_pred HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcc
Q 017573 248 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 325 (369)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR 325 (369)
.+.+...+.+.++....+.|..++.+|....++|+.+ +..|- ++..+.++|+++..++.|++...+|++.-++|+--|
T Consensus 505 Ld~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 505 LDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDR 584 (689)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhh
Confidence 9999999999999999999999999999999999864 45544 456788999999999999999999999999999999
Q ss_pred cccCCCceeEEEEe--ccc--cHHHHHHHHHHh
Q 017573 326 SGRFGRKGVAINFV--TRD--DERMLFDIQKFY 354 (369)
Q Consensus 326 ~~R~~~~~~~~~~~--~~~--~~~~~~~~~~~~ 354 (369)
+.|.|+.+.+.+++ ..+ |+..+..+.+.+
T Consensus 585 aHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred hhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999886554444 333 555555555444
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=6.2e-24 Score=194.62 Aligned_cols=328 Identities=21% Similarity=0.281 Sum_probs=221.6
Q ss_pred CCCcHhhhhhhhccccC----CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..+++-|+.+++.+... ..+++.+.||||||.+++-++...+.+++ .+|+++|-.+|..|+.+.|+..+ +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---C
Confidence 36788899999998765 67899999999999999999999998876 89999999999999999998765 4
Q ss_pred cEEEEEECCcch----HHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-----cHHHHHHHH
Q 017573 93 VKVHACVGGTSV----REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----FKDQIYDIF 163 (369)
Q Consensus 93 ~~v~~~~~~~~~----~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-----~~~~~~~~~ 163 (369)
.++.+++++.+. ..+.+...++..|+|+|-..++--+.+ +++||+||=|.-...+ |...-..++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~-------LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKN-------LGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhh-------ccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 566666666543 445566678899999998888754444 8999999999765322 222222333
Q ss_pred hhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecC--ccccccceeEEEEEccchhh---hHHHHHHHH-Hhc-cCC
Q 017573 164 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR--DELTLEGIKQFYVNVEKEEW---KLETLCDLY-ETL-AIT 236 (369)
Q Consensus 164 ~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~-~~~-~~~ 236 (369)
..-..++++++-||||+-+........ ......... ....++.+.-.-........ -...+.+.+ +.. .++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 333346779999999976554444222 111222111 11112222221111111111 112233322 222 345
Q ss_pred CeEEEeCCHhh------------------------------------------------------------HHHHHHHHh
Q 017573 237 QSVIFVNTRRK------------------------------------------------------------VDWLTDKMR 256 (369)
Q Consensus 237 k~lv~~~~~~~------------------------------------------------------------~~~~~~~l~ 256 (369)
.+|+|.|.+-. .+.+.+.|+
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 77777777633 234455554
Q ss_pred hC--CCeeEEecCCCCHH--HHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC------------Cccchh
Q 017573 257 SR--DHTVSATHGDMDQN--TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYL 320 (369)
Q Consensus 257 ~~--~~~~~~~~~~~~~~--~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------~~~~~~ 320 (369)
+. +.++..+.++.... .-+..+.+|.+|+.+|||+|+++..|.|+|+++.|.+++... ....+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 44 34566777765433 346789999999999999999999999999999987765421 234569
Q ss_pred hhhcccccCCCceeEEEEeccccHHHHHHH-----HHHhccccc
Q 017573 321 HRIGRSGRFGRKGVAINFVTRDDERMLFDI-----QKFYNVVIE 359 (369)
Q Consensus 321 Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 359 (369)
|..||+||.+++|.+++-....+...++.+ ..|++.+++
T Consensus 582 QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~ 625 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELA 625 (730)
T ss_pred HHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999998886666443 555555553
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=8.7e-23 Score=196.87 Aligned_cols=332 Identities=14% Similarity=0.142 Sum_probs=202.1
Q ss_pred HHHHHHHHhCCCCCCcHhhhhhhh----ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 5 ENLLRGIYAYGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 5 ~~i~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+.+.+.+...|| ++|+.|.++.+ .+.+++++++.||||+|||++++++++..... +.+++|.+||++|..|+
T Consensus 233 ~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~~vvi~t~t~~Lq~Ql 308 (850)
T TIGR01407 233 SLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EKPVVISTNTKVLQSQL 308 (850)
T ss_pred HHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CCeEEEEeCcHHHHHHH
Confidence 456677777777 58999998666 55568999999999999999999998876652 23899999999999998
Q ss_pred HH-HHHHhccccC--cEEEEEECCcch-----------------H---------------------H----------HH-
Q 017573 81 EK-VMRALGDYLG--VKVHACVGGTSV-----------------R---------------------E----------DQ- 108 (369)
Q Consensus 81 ~~-~~~~~~~~~~--~~v~~~~~~~~~-----------------~---------------------~----------~~- 108 (369)
.. ++..+...++ +++..+.|.... . + +.
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~ 388 (850)
T TIGR01407 309 LEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQ 388 (850)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHH
Confidence 65 4443332222 444433332110 0 0 00
Q ss_pred ----------------------HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-------c----
Q 017573 109 ----------------------RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-------F---- 155 (369)
Q Consensus 109 ----------------------~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-------~---- 155 (369)
+.....++|+|+++..|+..+..........+.+|+||||++.+.. .
T Consensus 389 i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~ 468 (850)
T TIGR01407 389 VRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYAD 468 (850)
T ss_pred hhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHH
Confidence 0012357999999999887764433223345899999999876310 0
Q ss_pred -HH---H-------------------------------------------------------------HHHHHhh-----
Q 017573 156 -KD---Q-------------------------------------------------------------IYDIFQL----- 165 (369)
Q Consensus 156 -~~---~-------------------------------------------------------------~~~~~~~----- 165 (369)
.. . +......
T Consensus 469 ~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 548 (850)
T TIGR01407 469 IKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDF 548 (850)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 00 0 0000000
Q ss_pred ------C-------------------------------------CccCcEEEEEeeCChh-HHHHHHHhcCCC-EE-EEe
Q 017573 166 ------L-------------------------------------PAKVQVGVFSATMPPE-ALEITRKFMNKP-VR-ILV 199 (369)
Q Consensus 166 ------~-------------------------------------~~~~~~i~~saT~~~~-~~~~~~~~~~~~-~~-~~~ 199 (369)
+ +....+|++|||+..+ ..+.....++-+ .. ...
T Consensus 549 ~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~ 628 (850)
T TIGR01407 549 KNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTI 628 (850)
T ss_pred HHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcccccee
Confidence 0 1124578899998743 233333333322 11 111
Q ss_pred cCccccccceeEEEEEc--c-----chhhhH----HHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEec
Q 017573 200 KRDELTLEGIKQFYVNV--E-----KEEWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATH 266 (369)
Q Consensus 200 ~~~~~~~~~~~~~~~~~--~-----~~~~~~----~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~ 266 (369)
.........-...+... + ...... +.+.+++.. ..+++|||++|.+.++.++..|... .....++.
T Consensus 629 ~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~ 707 (850)
T TIGR01407 629 EPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA 707 (850)
T ss_pred cCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe
Confidence 11112211112222211 1 111122 223333332 4479999999999999999999752 11222333
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCc--EEEEecCCCCc----------------------------
Q 017573 267 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS--LVINYDLPTQP---------------------------- 316 (369)
Q Consensus 267 ~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~--~vi~~~~~~~~---------------------------- 316 (369)
.+.+ ..|.++++.|++++..||++|+.+.+|+|+|+.. .||+.+.|...
T Consensus 708 q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~ 786 (850)
T TIGR01407 708 QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPM 786 (850)
T ss_pred cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHH
Confidence 3323 5688899999999999999999999999999754 56777766421
Q ss_pred --cchhhhhcccccCCCceeEEEEeccc
Q 017573 317 --ENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 317 --~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
..+.|.+||+.|..++.-++++.++.
T Consensus 787 A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 787 AIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHhhccccccCCceEEEEEEccc
Confidence 23589999999997765556666654
No 116
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.93 E-value=8.7e-24 Score=195.81 Aligned_cols=328 Identities=21% Similarity=0.249 Sum_probs=221.8
Q ss_pred CCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccC------CCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 18 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGL------VQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~------~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.+|.||++.++.+. .+=+.|++..+|-|||+..+..++....+.+ .....|||||+ +|+.-|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 48999999998765 2467899999999999887655554433321 11248999998 7899999999999
Q ss_pred ccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC
Q 017573 88 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 167 (369)
Q Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~ 167 (369)
+.. +++....|........+..-++++|+|++|+.+.+-+.. +....|.+.|+||.|-+.+. ...+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 876 555555666555555444556689999999999754433 22334789999999988443 456666666666
Q ss_pred ccCcEEEEEeeCChhHH-HHHH-----------------HhcCCCEEEEec-----------------------------
Q 017573 168 AKVQVGVFSATMPPEAL-EITR-----------------KFMNKPVRILVK----------------------------- 200 (369)
Q Consensus 168 ~~~~~i~~saT~~~~~~-~~~~-----------------~~~~~~~~~~~~----------------------------- 200 (369)
.+. .+.+|+||..+.. ++.. .-+.+|+.-...
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 555 4557999863321 1110 000000000000
Q ss_pred -----CccccccceeEEEEEccc---------------------------------------------------------
Q 017573 201 -----RDELTLEGIKQFYVNVEK--------------------------------------------------------- 218 (369)
Q Consensus 201 -----~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 218 (369)
-...++..+..++....+
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000011111111111111
Q ss_pred ---------------------hhhhHHHHHHHHHhccC----------------CCeEEEeCCHhhHHHHHHHHhhCC--
Q 017573 219 ---------------------EEWKLETLCDLYETLAI----------------TQSVIFVNTRRKVDWLTDKMRSRD-- 259 (369)
Q Consensus 219 ---------------------~~~~~~~l~~~~~~~~~----------------~k~lv~~~~~~~~~~~~~~l~~~~-- 259 (369)
...|+.++.+++..... -++||||.-+..+..+.+.|.+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 01156667777755421 278999999999998888776552
Q ss_pred -CeeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCc--ee
Q 017573 260 -HTVSATHGDMDQNTRDIIMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GV 334 (369)
Q Consensus 260 -~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~--~~ 334 (369)
+....+.|..++.+|.++.++|+++ .++||+ +|.+.+-|+|+.+++.||+++-.||+..=.|++-||+|.|++ -.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 3455899999999999999999998 678775 567999999999999999999999999999999999999988 46
Q ss_pred EEEEecccc-HHHHHHHHHH
Q 017573 335 AINFVTRDD-ERMLFDIQKF 353 (369)
Q Consensus 335 ~~~~~~~~~-~~~~~~~~~~ 353 (369)
+|-+++.+. ++.+.++++|
T Consensus 1447 VyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1447 VYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred eeeehhcccHHHHHhhHHHH
Confidence 777777764 3334445544
No 117
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.1e-23 Score=183.60 Aligned_cols=310 Identities=15% Similarity=0.217 Sum_probs=209.8
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH-hccccCcEEEEE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 98 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~v~~~ 98 (369)
+.+-.+++..+.+++-++|.|+||+|||...--.+.++--. ..+ ++.+--|++.-+..+++...+ ....+|-.|.+.
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-SSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-cCC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 34445677777888999999999999997754444433221 122 566777998766666655533 333445555444
Q ss_pred ECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh--ccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 99 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~--~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..-... ...+..|.++|-..|++....... ++.+++||+||||+=. ..-....+.++.+.- +..++|.+|
T Consensus 131 IRFed~------ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimS 202 (674)
T KOG0922|consen 131 IRFEDS------TSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMS 202 (674)
T ss_pred EEeccc------CCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEe
Confidence 432221 123478999999999987776653 5568999999999721 111112222333332 356799999
Q ss_pred eeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhh---HHHHHHHHHhccCCCeEEEeCCHhhHHHHHH
Q 017573 177 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK---LETLCDLYETLAITQSVIFVNTRRKVDWLTD 253 (369)
Q Consensus 177 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~ 253 (369)
||... +....++..-..+.+.... ..++.+|..-+..+.. ...+.++....+.+.+|||..+.++.+..++
T Consensus 203 ATlda---~kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 203 ATLDA---EKFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eeecH---HHHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 99863 3344555542233332222 2234444443333333 3444455555677899999999999999999
Q ss_pred HHhhC----CC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC-------------
Q 017573 254 KMRSR----DH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------- 312 (369)
Q Consensus 254 ~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------- 312 (369)
.|.+. .. -+..+||.++.+++.++++.-..|.-+|+++|+++++.+.+|++..||.-+.
T Consensus 277 ~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 277 LLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 99766 11 2467999999999999988888888899999999999999999999996553
Q ss_pred -----CCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 017573 313 -----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 313 -----~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
|-|.....||.||+||+ .+|.|+-+++..+...
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAYDK 394 (674)
T ss_pred ceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHHhh
Confidence 33667889999999999 5799999999876643
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=5.6e-23 Score=185.44 Aligned_cols=316 Identities=20% Similarity=0.237 Sum_probs=216.9
Q ss_pred CCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
|. .|++.|--+.-.+.+| -+....||.|||+++.++++.....+. .+.+++|+.-|+.+-++++..++..+|++
T Consensus 76 g~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~LGLs 149 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEALGLT 149 (764)
T ss_pred CC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhcCCE
Confidence 44 7888888777777655 488999999999999888886666555 89999999999999999999999999999
Q ss_pred EEEEECCcchHHHHHHHccCCcEEEeccHHHH-HHHHcCC------CCCCCccEEEEechhHhhccC-------------
Q 017573 95 VHACVGGTSVREDQRILQAGVHVVVGTPGRVF-DMLRRQS------LRPDYIKMFVLDEADEMLSRG------------- 154 (369)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~-~~~~~~~------~~~~~~~~viiDE~H~~~~~~------------- 154 (369)
+..+.++.+....+... .+||+++|...|- ..++.+- .....+.++|+||++.+.-..
T Consensus 150 vg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~ 227 (764)
T PRK12326 150 VGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPG 227 (764)
T ss_pred EEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcc
Confidence 99998887766555444 4799999998873 3333321 122447899999999754100
Q ss_pred --cHHHHHHHHhhCCc----------------------------------------------------------------
Q 017573 155 --FKDQIYDIFQLLPA---------------------------------------------------------------- 168 (369)
Q Consensus 155 --~~~~~~~~~~~~~~---------------------------------------------------------------- 168 (369)
....+..+...+.+
T Consensus 228 ~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~ 307 (764)
T PRK12326 228 EAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVR 307 (764)
T ss_pred hhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 00111111111100
Q ss_pred ------------------------------------------------------cCcEEEEEeeCChhHHHHHHHhcCCC
Q 017573 169 ------------------------------------------------------KVQVGVFSATMPPEALEITRKFMNKP 194 (369)
Q Consensus 169 ------------------------------------------------------~~~~i~~saT~~~~~~~~~~~~~~~~ 194 (369)
-.++.+||+|...... .....++-+
T Consensus 308 dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~-Ef~~iY~l~ 386 (764)
T PRK12326 308 DGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE-QLRQFYDLG 386 (764)
T ss_pred CCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH-HHHHHhCCc
Confidence 0457788888865443 344444444
Q ss_pred EEEEecCcccccc-ceeEEEEEccchhhhHHHHHH-HHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCH
Q 017573 195 VRILVKRDELTLE-GIKQFYVNVEKEEWKLETLCD-LYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 271 (369)
Q Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 271 (369)
+.......+.... .....|. +...+...+.+ +...+ .+.++||.+.+++..+.+.+.|.+.+++..++++....
T Consensus 387 Vv~IPtnkp~~R~d~~d~iy~---t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~ 463 (764)
T PRK12326 387 VSVIPPNKPNIREDEADRVYA---TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA 463 (764)
T ss_pred EEECCCCCCceeecCCCceEe---CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH
Confidence 3333222222111 1112222 22334444444 33333 55699999999999999999999999999999998554
Q ss_pred HHHHHHHHHHhcCC-CcEEEEecCCcCCCCCC---------------CCcEEEEecCCCCccchhhhhcccccCCCceeE
Q 017573 272 NTRDIIMREFRSGS-SRVLITTDLLARGIDVQ---------------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA 335 (369)
Q Consensus 272 ~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~---------------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 335 (369)
.+ .+++. ..|. -.|.|||+++++|.||. +-=+||....+.|...-.|..||+||.|.+|.+
T Consensus 464 ~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 464 EE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred hH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCce
Confidence 44 33333 2343 34999999999999986 233677778888999999999999999999999
Q ss_pred EEEeccccHH
Q 017573 336 INFVTRDDER 345 (369)
Q Consensus 336 ~~~~~~~~~~ 345 (369)
..|++-.|.-
T Consensus 541 ~f~lSleDdl 550 (764)
T PRK12326 541 VFFVSLEDDV 550 (764)
T ss_pred eEEEEcchhH
Confidence 9888866544
No 119
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=187.16 Aligned_cols=321 Identities=17% Similarity=0.180 Sum_probs=216.7
Q ss_pred CCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 18 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
++.+||.-.++.+. ++=+.|+..++|-|||..++..+......+. .+.-|||||+.. .++|.++|.+||+. +
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsST-leNWlrEf~kwCPs--l 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSST-LENWLREFAKWCPS--L 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchh-HHHHHHHHHHhCCc--e
Confidence 58999999987764 3557799999999999776544443334444 448999999965 46799999999975 6
Q ss_pred EEEEEECCcchHHHHH-HH-c--cCCcEEEeccHHHHHHH-HcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCc
Q 017573 94 KVHACVGGTSVREDQR-IL-Q--AGVHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 168 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~-~~-~--~~~~iiv~t~~~l~~~~-~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~ 168 (369)
+|...+|+.......+ .+ . .+++|+++||+.+..-- .+.-+...+|+++|+||+|.+.+.. ...+..++.- +
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I-~- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI-N- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc-c-
Confidence 7777888775433322 22 2 27899999998773211 1111223447999999999997765 4444444433 3
Q ss_pred cCcEEEEEeeCChh-HHHHHHHhc---CC-----------------------------------------CEEEEecCc-
Q 017573 169 KVQVGVFSATMPPE-ALEITRKFM---NK-----------------------------------------PVRILVKRD- 202 (369)
Q Consensus 169 ~~~~i~~saT~~~~-~~~~~~~~~---~~-----------------------------------------~~~~~~~~~- 202 (369)
....+++|+||-.+ +.+++..+. .+ |........
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~q 631 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQ 631 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44568889998643 222211100 00 000000000
Q ss_pred --cccccceeEEE-EEccchh-----------------------------------------------------------
Q 017573 203 --ELTLEGIKQFY-VNVEKEE----------------------------------------------------------- 220 (369)
Q Consensus 203 --~~~~~~~~~~~-~~~~~~~----------------------------------------------------------- 220 (369)
...++.+.++. +......
T Consensus 632 VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~i 711 (941)
T KOG0389|consen 632 VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRI 711 (941)
T ss_pred HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHH
Confidence 00000000000 0000000
Q ss_pred -------------------------------------------------hhHHHHHHHHHhc--cCCCeEEEeCCHhhHH
Q 017573 221 -------------------------------------------------WKLETLCDLYETL--AITQSVIFVNTRRKVD 249 (369)
Q Consensus 221 -------------------------------------------------~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~ 249 (369)
.+...|..++... .+.++|+|........
T Consensus 712 l~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLD 791 (941)
T KOG0389|consen 712 LNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLD 791 (941)
T ss_pred hCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHH
Confidence 0566666666554 3368999999999999
Q ss_pred HHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccc
Q 017573 250 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SR-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 327 (369)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~ 327 (369)
-+.-.|...++....+.|...-.+|..++++|..++ +. +|++|.+.+.|+|+..+++||+++...++..=.|+--|++
T Consensus 792 ILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcH 871 (941)
T KOG0389|consen 792 ILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCH 871 (941)
T ss_pred HHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHH
Confidence 999999999999999999999999999999998764 44 6678999999999999999999999999999999999999
Q ss_pred cCCCc--eeEEEEeccccHH
Q 017573 328 RFGRK--GVAINFVTRDDER 345 (369)
Q Consensus 328 R~~~~--~~~~~~~~~~~~~ 345 (369)
|.|+. ..++-+++.+..+
T Consensus 872 RvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 872 RVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hhCCcceeEEEEEEecCcHH
Confidence 99976 5666677766544
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=6.8e-23 Score=190.07 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcC
Q 017573 220 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 297 (369)
Q Consensus 220 ~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 297 (369)
..+...+...+... .+.++||||++++.++.+.+.|...+++...+|+ ...+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 44667777766443 5679999999999999999999999999999997 5778899999999999999999999999
Q ss_pred CCCCC---CCcE-----EEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 298 GIDVQ---QVSL-----VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 298 G~d~~---~~~~-----vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
|+||+ .+.. ||....|.|...+.|+.||+||.|.+|.+++|++..|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 3433 377778888899999999999999999999999876654
No 121
>COG4889 Predicted helicase [General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=195.35 Aligned_cols=317 Identities=18% Similarity=0.212 Sum_probs=191.1
Q ss_pred HHHHHHhCCCCCCcHhhhhhhhccccC----CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 7 LLRGIYAYGFEKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 7 i~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
+..+|.-..=..|||+|++|+++..++ .+.-+.+.||+|||++++- +.+++.. .++|+++|+.+|..|..+
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeecchHHHHHHHHH
Confidence 334443334457999999999988764 5667788999999999754 3444443 389999999999999988
Q ss_pred HHHHhccccCcEEEEEECCcchHHH-----------------H--------HHHccCCcEEEeccHHHHHHHHcCCCCCC
Q 017573 83 VMRALGDYLGVKVHACVGGTSVRED-----------------Q--------RILQAGVHVVVGTPGRVFDMLRRQSLRPD 137 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~--------~~~~~~~~iiv~t~~~l~~~~~~~~~~~~ 137 (369)
+|..-.. +.++.....++...... . .....+--|+++|++++...-.....-..
T Consensus 225 ew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 225 EWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLD 303 (1518)
T ss_pred HHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCC
Confidence 8876422 23333333322221110 0 11123456999999999888777666777
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCC-----ccCcEEEEEeeCChhHHHHHHH-----------------------
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLP-----AKVQVGVFSATMPPEALEITRK----------------------- 189 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-----~~~~~i~~saT~~~~~~~~~~~----------------------- 189 (369)
.|++||+||+|+.........-.+.+.++. +..+.+.|||||.--.+....+
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 899999999999764332222112222221 1345678999985211111000
Q ss_pred ----------hcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc---------------------cCCCe
Q 017573 190 ----------FMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL---------------------AITQS 238 (369)
Q Consensus 190 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~~~k~ 238 (369)
++....+.....+........+....-+......+....++-.+ +..+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 01111111111111000000111111111122333333322111 11256
Q ss_pred EEEeCCHhhHHHHHHHHhh---------------CCCeeEEecCCCCHHHHHHHHH---HHhcCCCcEEEEecCCcCCCC
Q 017573 239 VIFVNTRRKVDWLTDKMRS---------------RDHTVSATHGDMDQNTRDIIMR---EFRSGSSRVLITTDLLARGID 300 (369)
Q Consensus 239 lv~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~~~~~vli~t~~~~~G~d 300 (369)
+-||.++++.+.+++.+.. ....+..+.|.|+-.+|...+. .|...+++||-....+++|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 8889888877766655532 1345667788888888844433 234456788888889999999
Q ss_pred CCCCcEEEEecCCCCccchhhhhcccccC
Q 017573 301 VQQVSLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 301 ~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
+|.++.||++++..+..+.+|.+||+.|.
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999996
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.7e-22 Score=185.37 Aligned_cols=314 Identities=19% Similarity=0.226 Sum_probs=211.6
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.|- +-.+.-.+.-+..+.||+|||+++.++++-....+. .+.+++|+.-|+.+-++++..++..+|+++..
T Consensus 82 ~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 4455554 444444677899999999999999888876666555 89999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCCCC-------CCCccEEEEechhHhh-ccC--------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSLR-------PDYIKMFVLDEADEML-SRG-------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~~~-------~~~~~~viiDE~H~~~-~~~-------------- 154 (369)
+.++.+....+.... ++|+++|...| +.+++.. .. ...++++|+||+|.+. +..
T Consensus 157 i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~-~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~ 233 (913)
T PRK13103 157 VTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDN-MAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSS 233 (913)
T ss_pred ECCCCCHHHHHHHhc--CCEEEEcccccccchhhcc-ceechhhhcccccceeEechhhheeccccCCceeecCCCccch
Confidence 988877666555444 89999999887 3333332 22 2568999999999754 100
Q ss_pred -cHHHHHHHHhhCC-------------------cc---------------------------------------------
Q 017573 155 -FKDQIYDIFQLLP-------------------AK--------------------------------------------- 169 (369)
Q Consensus 155 -~~~~~~~~~~~~~-------------------~~--------------------------------------------- 169 (369)
.......+...+. .+
T Consensus 234 ~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~A 313 (913)
T PRK13103 234 KLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAG 313 (913)
T ss_pred HHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHH
Confidence 0000000000000 00
Q ss_pred -----------------------------------------------------------------------CcEEEEEee
Q 017573 170 -----------------------------------------------------------------------VQVGVFSAT 178 (369)
Q Consensus 170 -----------------------------------------------------------------------~~~i~~saT 178 (369)
.++.+||+|
T Consensus 314 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGT 393 (913)
T PRK13103 314 LRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGT 393 (913)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCC
Confidence 345667777
Q ss_pred CChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH-Hhc-cCCCeEEEeCCHhhHHHHHHHHh
Q 017573 179 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETL-AITQSVIFVNTRRKVDWLTDKMR 256 (369)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lv~~~~~~~~~~~~~~l~ 256 (369)
...... .....++-++.......+.........++ .+...+...+.+-+ ..+ .+.++||-+.|++..+.+++.|.
T Consensus 394 a~te~~-Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy--~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~ 470 (913)
T PRK13103 394 ADTEAF-EFRQIYGLDVVVIPPNKPLARKDFNDLVY--LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLK 470 (913)
T ss_pred CHHHHH-HHHHHhCCCEEECCCCCCcccccCCCeEE--cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH
Confidence 754443 33344444433333222222222222222 22233444444433 333 46799999999999999999999
Q ss_pred hCCCeeEEecCCCCHHHHHHHHHHHhcCC-CcEEEEecCCcCCCCCC---------------------------------
Q 017573 257 SRDHTVSATHGDMDQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQ--------------------------------- 302 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~--------------------------------- 302 (369)
+.+++..++++.....+...+ . ..|. -.|.|||+++++|.||.
T Consensus 471 ~~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 547 (913)
T PRK13103 471 KEGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQ 547 (913)
T ss_pred HcCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHH
Confidence 999999888887654443333 3 3343 35999999999999984
Q ss_pred ----CCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 303 ----QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 303 ----~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+-=+||....+.|...=.|..||+||.|.+|.+-.|++-.|.-
T Consensus 548 V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 548 VIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2335777778888888899999999999999999998875543
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.90 E-value=3.2e-22 Score=162.13 Aligned_cols=188 Identities=35% Similarity=0.516 Sum_probs=149.7
Q ss_pred hCCCCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 13 AYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
.+++.+++++|.++++.+... +.+++.+|||+|||.+++.+++..+..... .++++++|+.+++.|+.+.+.+.....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~-~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKG-KRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCC-CcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 457789999999999999998 999999999999999888888887766532 389999999999999999999876554
Q ss_pred C-cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccC
Q 017573 92 G-VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 170 (369)
Q Consensus 92 ~-~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
. .......+...............+++++|++.+.............++++|+||+|.+....+...+..+...+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 4 333334443333333333344449999999999998888776667789999999999986567788888888887888
Q ss_pred cEEEEEeeCChhHHHHHHHhcCCCEEEEecC
Q 017573 171 QVGVFSATMPPEALEITRKFMNKPVRILVKR 201 (369)
Q Consensus 171 ~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~ 201 (369)
+++++||||+.+.......++.....+....
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999999999888888878777666555443
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=8.1e-21 Score=175.77 Aligned_cols=131 Identities=24% Similarity=0.354 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCC
Q 017573 222 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299 (369)
Q Consensus 222 ~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 299 (369)
..+.+...+... .+.+++|||++.+.++.+++.|...+.++..+|++++..+|.++++.|++|++.|+|+|+.+.+|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 444444444432 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEec-----CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHH
Q 017573 300 DVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 353 (369)
Q Consensus 300 d~~~~~~vi~~~-----~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (369)
|+|.+++|++++ .|.+...|+|++||+||. ..|.+++|.+..+..+...+.+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999887 688999999999999998 67999999998776665555443
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.90 E-value=3.4e-22 Score=185.89 Aligned_cols=318 Identities=18% Similarity=0.208 Sum_probs=216.4
Q ss_pred CCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
.++|.||-+.++.++ .++++|+...+|.|||+..+..+.........-+..|+|+|...+ ..|.++|..+. .
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---h
Confidence 689999999998876 579999999999999976544333333333233379999999655 45777788775 6
Q ss_pred cEEEEEECCcchHHHHHH----Hcc-----CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHH
Q 017573 93 VKVHACVGGTSVREDQRI----LQA-----GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 163 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~----~~~-----~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~ 163 (369)
+++.+.+|+.......+. ... ..+++++|++.++.-... +..-.|.++++||||++.+.. ..+...+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~~--~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKNDE--SKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCchH--HHHHHHH
Confidence 788888887765544322 112 478999999988653322 333447899999999996543 3333445
Q ss_pred hhCCccCcEEEEEeeCChhHHHHHHHhcC--CCEEEEe---------------------------------cCccccccc
Q 017573 164 QLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILV---------------------------------KRDELTLEG 208 (369)
Q Consensus 164 ~~~~~~~~~i~~saT~~~~~~~~~~~~~~--~~~~~~~---------------------------------~~~~~~~~~ 208 (369)
..+..+ ..+++|+||-.+.......++. .|..+.. +.+...++.
T Consensus 521 ~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 555433 3577899996543332221110 1100000 000001111
Q ss_pred eeEEE-EEccc------------------------------------------------hhhh---H------HHHHHHH
Q 017573 209 IKQFY-VNVEK------------------------------------------------EEWK---L------ETLCDLY 230 (369)
Q Consensus 209 ~~~~~-~~~~~------------------------------------------------~~~~---~------~~l~~~~ 230 (369)
.+.+. +.... .+.. . ..+..++
T Consensus 600 ~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 600 EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 11110 00000 0000 0 1222222
Q ss_pred -------------Hhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEe
Q 017573 231 -------------ETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG---SSRVLITT 292 (369)
Q Consensus 231 -------------~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vli~t 292 (369)
-+. .+-++|||..-+....-++++|...+++...+.|....+.|..+++.|+.. +..+|++|
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 222 234899999999999999999999999999999999999999999999864 46689999
Q ss_pred cCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCc--eeEEEEecccc
Q 017573 293 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 343 (369)
Q Consensus 293 ~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~ 343 (369)
.+.+-|||+..++.||+++..||+..=.|+..|++|.|++ ..+|-+++.+.
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999999999999977 56777777763
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=3.5e-20 Score=176.47 Aligned_cols=315 Identities=18% Similarity=0.199 Sum_probs=189.1
Q ss_pred CCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH-HHHHHHhcccc
Q 017573 17 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALGDYL 91 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~-~~~~~~~~~~~ 91 (369)
-++|+-|.+....+. +++.++++|+||+|||++++++++.... +.+++|.+||++|.+|. .+.+..+....
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~----~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~ 319 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD----QRQIIVSVPTKILQDQIMAEEVKAIQEVF 319 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC----CCcEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 379999999665554 4688999999999999999999886542 33899999999999999 45566555445
Q ss_pred CcEEEEEECCcchH-----------------H-------------------------------HH---------------
Q 017573 92 GVKVHACVGGTSVR-----------------E-------------------------------DQ--------------- 108 (369)
Q Consensus 92 ~~~v~~~~~~~~~~-----------------~-------------------------------~~--------------- 108 (369)
++++..+.|+...- . +.
T Consensus 320 ~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~ 399 (820)
T PRK07246 320 HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFY 399 (820)
T ss_pred CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcc
Confidence 55555444321100 0 00
Q ss_pred --------HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-----c-------HHH----------
Q 017573 109 --------RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F-------KDQ---------- 158 (369)
Q Consensus 109 --------~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-----~-------~~~---------- 158 (369)
+.....++|+|+++..|...+..... ....+.+|+||||++.+.. . ...
T Consensus 400 ~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 478 (820)
T PRK07246 400 DYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPLP 478 (820)
T ss_pred hhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHHH
Confidence 00022479999999988876654432 3457999999999875211 0 000
Q ss_pred ---------------------------------H------------------HHHHhh----------------------
Q 017573 159 ---------------------------------I------------------YDIFQL---------------------- 165 (369)
Q Consensus 159 ---------------------------------~------------------~~~~~~---------------------- 165 (369)
+ ..++..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~~ 558 (820)
T PRK07246 479 LLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLNS 558 (820)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEEe
Confidence 0 000000
Q ss_pred -----------CCccCcEEEEEeeCChh-HHHHHHHhcCCC-EEEEecCccccccceeEEEEE--ccc-----hhhhHHH
Q 017573 166 -----------LPAKVQVGVFSATMPPE-ALEITRKFMNKP-VRILVKRDELTLEGIKQFYVN--VEK-----EEWKLET 225 (369)
Q Consensus 166 -----------~~~~~~~i~~saT~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~ 225 (369)
++....+|++|||+..+ ...+ ...++-. ....... .....-...+.. .+. .....+.
T Consensus 559 ~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~-~~~lGl~~~~~~~~~--~~~~~~~~~~i~~~~p~~~~~~~~~~~~~ 635 (820)
T PRK07246 559 ASKAFTHFSQLLPETCKTYFVSATLQISPRVSL-ADLLGFEEYLFHKIE--KDKKQDQLVVVDQDMPLVTETSDEVYAEE 635 (820)
T ss_pred eeCcHHHHHHHHhcCCeEEEEecccccCCCCcH-HHHcCCCccceecCC--CChHHccEEEeCCCCCCCCCCChHHHHHH
Confidence 01113567888887521 1122 2222211 1111110 111111111111 111 1112222
Q ss_pred HHHHHHh--ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCC
Q 017573 226 LCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 303 (369)
Q Consensus 226 l~~~~~~--~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 303 (369)
+.+.+.. ..+++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|..+.+|+|+|+
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 2222211 345899999999999999999997654443 4444322 3566899999988889999999999999974
Q ss_pred --CcEEEEecCCCC-c-----------------------------cchhhhhcccccCCCceeEEEEeccc
Q 017573 304 --VSLVINYDLPTQ-P-----------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 304 --~~~vi~~~~~~~-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
...+|+...|.. + ..+.|.+||+.|..++.-+++++++.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 555677776532 1 23689999999997654455566654
No 127
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=9.6e-21 Score=166.04 Aligned_cols=311 Identities=16% Similarity=0.221 Sum_probs=207.0
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH-HhccccCcEE
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR-ALGDYLGVKV 95 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~-~~~~~~~~~v 95 (369)
...+++-.+.+.++.+++-++|.|+||||||...-..+.+. .-...+.++-.--|++.-+...+.... ++...+|-.|
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~Ea-Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEA-GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhc-ccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 34577788889999999999999999999997653333322 112222245555688877766655543 3443444444
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh--ccCcHHHHHHHHhhCCccCcEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVG 173 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~--~~~~~~~~~~~~~~~~~~~~~i 173 (369)
.+.+.-... .....-+=++|-.+|++.+... .++..++++|+||+|.=. ..-....+..+. .+.+..+++
T Consensus 343 GYsIRFEdc------TSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKll 414 (902)
T KOG0923|consen 343 GYSIRFEDC------TSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKLL 414 (902)
T ss_pred ceEEEeccc------cCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceEE
Confidence 333221110 1123567799999998877665 456668999999999721 111122222333 334677899
Q ss_pred EEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH---HhccCCCeEEEeCCHhhHHH
Q 017573 174 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY---ETLAITQSVIFVNTRRKVDW 250 (369)
Q Consensus 174 ~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~k~lv~~~~~~~~~~ 250 (369)
..|||+.. ..+...+-.-|+.....+. ..+..+|...+........+..++ ..-+.+.+|||....++.+.
T Consensus 415 IsSAT~DA--ekFS~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 415 ISSATMDA--EKFSAFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eeccccCH--HHHHHhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 99999853 3333333334444333222 233445554444443333333333 33466899999999999888
Q ss_pred HHHHHhhC---------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC---------
Q 017573 251 LTDKMRSR---------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------- 312 (369)
Q Consensus 251 ~~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------- 312 (369)
..+.|... ..-+..+++.++.+.+.++++--.+|.-+|++||+++++.+.|+++..||.-+.
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 77777544 345788999999999999988888888899999999999999999999996443
Q ss_pred ---------CCCccchhhhhcccccCCCceeEEEEecccc
Q 017573 313 ---------PTQPENYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 313 ---------~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
|-|.+...||.||+||+| +|.|+-+++.-.
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 346677899999999995 799999998543
No 128
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=171.95 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=112.6
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC-cEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVH 96 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~-~~v~ 96 (369)
.|-.+|++.+..+-.+...+|.|||.+|||++..-++-..++....+ -++++.|+++|+.|....+........ ..-.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 57889999999999999999999999999998766666666555444 899999999999999887765432211 1112
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcC---CCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEE
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 173 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~---~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i 173 (369)
.+.|... .+.++-.-.|+|.|+-|+.+...+... .....+++++|+||+|.+.+..-.-.+..+.... .+.++
T Consensus 590 sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 2222222 111111225899999999998887763 3345568999999999987655444555555544 34589
Q ss_pred EEEeeCCh
Q 017573 174 VFSATMPP 181 (369)
Q Consensus 174 ~~saT~~~ 181 (369)
++|||..+
T Consensus 666 ~LSATigN 673 (1330)
T KOG0949|consen 666 VLSATIGN 673 (1330)
T ss_pred EEecccCC
Confidence 99999864
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.8e-20 Score=171.87 Aligned_cols=314 Identities=17% Similarity=0.230 Sum_probs=209.1
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.|--.--.+ .++-+....||-|||+++.++++-....+. .+-||+.+.-|+..=++++..++..+|+.|.+
T Consensus 78 r~ydVQliGglvL--h~G~IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 78 RPYDVQIIGGIIL--DLGSVAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred CcCchHHHHHHHH--hcCCeeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 5666666555444 345689999999999999887764444443 79999999999999999999999999999998
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEechhHhh-ccC---------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSL------RPDYIKMFVLDEADEML-SRG--------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~~------~~~~~~~viiDE~H~~~-~~~--------------- 154 (369)
...+......+... .+||.++|...| +.+++..-. ....+.+.|+||++.+. +..
T Consensus 153 i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~ 230 (925)
T PRK12903 153 NKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSN 230 (925)
T ss_pred eCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchH
Confidence 88766655544433 489999999887 344443211 12447899999999754 100
Q ss_pred cHHHHHHHHhhCCc------------------------------------------------------------------
Q 017573 155 FKDQIYDIFQLLPA------------------------------------------------------------------ 168 (369)
Q Consensus 155 ~~~~~~~~~~~~~~------------------------------------------------------------------ 168 (369)
.......+...+..
T Consensus 231 ~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V 310 (925)
T PRK12903 231 LYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKI 310 (925)
T ss_pred HHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEE
Confidence 01111111111100
Q ss_pred --------------------------------------------------cCcEEEEEeeCChhHHHHHHHhcCCCEEEE
Q 017573 169 --------------------------------------------------KVQVGVFSATMPPEALEITRKFMNKPVRIL 198 (369)
Q Consensus 169 --------------------------------------------------~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 198 (369)
-.++.+||+|......++. ..++-.+...
T Consensus 311 ~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~-~iY~l~Vv~I 389 (925)
T PRK12903 311 ELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI-DIYNMRVNVV 389 (925)
T ss_pred EEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-HHhCCCEEEC
Confidence 0456778888765544443 3444333333
Q ss_pred ecCccccc-cceeEEEEEccchhhhHHHHHH-HHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 017573 199 VKRDELTL-EGIKQFYVNVEKEEWKLETLCD-LYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 275 (369)
Q Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
....+... .....+|. +...+...+.+ +...+ .+.++||.|.+++..+.+++.|.+.+++..++++.....+..
T Consensus 390 PTnkP~~R~D~~d~iy~---t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~ 466 (925)
T PRK12903 390 PTNKPVIRKDEPDSIFG---TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAE 466 (925)
T ss_pred CCCCCeeeeeCCCcEEE---cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHH
Confidence 22222111 11112222 22233444444 33333 456999999999999999999999999999999975544433
Q ss_pred HHHHHHhcCC-CcEEEEecCCcCCCCCCCCc--------EEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 276 IIMREFRSGS-SRVLITTDLLARGIDVQQVS--------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 276 ~~~~~f~~~~-~~vli~t~~~~~G~d~~~~~--------~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
++. ..|. -.|.|||+++++|.||.--. +||....+.|...-.|..||+||.|.+|.+-.|.+-.|.-
T Consensus 467 -IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 467 -IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred -HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 333 3453 45999999999999986322 7888888888888899999999999999999888876544
No 130
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=2.8e-20 Score=172.79 Aligned_cols=318 Identities=17% Similarity=0.209 Sum_probs=217.4
Q ss_pred CcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh-ccccCcEEEE
Q 017573 19 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL-GDYLGVKVHA 97 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~-~~~~~~~v~~ 97 (369)
.+..++++++++.+++-+++.++||+|||...-..+++........++++.--|++--+...+++..+- +...|-.|.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 467788999999999999999999999999988888887655555557777779987777777766432 2333444443
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
-.+..... .....+.+||...|++.+.. ......+..+|+||+|+=. +..+.-.+.+.+-...+..++|+||
T Consensus 254 qvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 254 QVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred EEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 33322211 22368999999999998887 3456668999999999732 2223333333333344788999999
Q ss_pred eeCChhHHHHHHHhcCCCEEEEecCcccc----------------ccceeEEE-----------E---Ec-cchhhhHHH
Q 017573 177 ATMPPEALEITRKFMNKPVRILVKRDELT----------------LEGIKQFY-----------V---NV-EKEEWKLET 225 (369)
Q Consensus 177 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-----------~---~~-~~~~~~~~~ 225 (369)
||.. .+....+++....+.......+ .....+.. . .. -......+.
T Consensus 327 AT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 327 ATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred eecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 9986 2344444443322222111000 00000000 0 00 001112233
Q ss_pred HHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhC-------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCC
Q 017573 226 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298 (369)
Q Consensus 226 l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 298 (369)
+..+......+.+|||.++.++...+.+.|... ..-+..+|+.++..++..+......|..+|+++|.+++.+
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETS 483 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETS 483 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhc
Confidence 333334444678999999999999999999753 2457889999999999999999889999999999999999
Q ss_pred CCCCCCcEEEEecCC------------------CCccchhhhhcccccCCCceeEEEEeccccHHHH
Q 017573 299 IDVQQVSLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347 (369)
Q Consensus 299 ~d~~~~~~vi~~~~~------------------~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~ 347 (369)
+.|+++-.||..+.. -|.....||.||+||. ..|.||-+++....+.+
T Consensus 484 ITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 484 ITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKL 549 (924)
T ss_pred ccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhc
Confidence 999999999976532 1456779999999998 88999999997654433
No 131
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.8e-19 Score=168.15 Aligned_cols=143 Identities=27% Similarity=0.359 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCC
Q 017573 222 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299 (369)
Q Consensus 222 ~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 299 (369)
..+.+...+... .+.+++|||++.+.++.+++.|...+.++..+|++++..+|..+++.|+.|...|+|+|+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 344444444332 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecC-----CCCccchhhhhcccccCCCceeEEEEecc---------ccHHHHHHHHHHhccccccCCcch
Q 017573 300 DVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTR---------DDERMLFDIQKFYNVVIEELPSNV 365 (369)
Q Consensus 300 d~~~~~~vi~~~~-----~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
|+|+++.|++++. |.+...|+|++||+||. ..|.++.|++. .+....+.++..++.....+|..+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999998874 67889999999999996 78999999995 456666777888888887777655
No 132
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-20 Score=168.86 Aligned_cols=326 Identities=17% Similarity=0.200 Sum_probs=204.9
Q ss_pred hhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhh---ccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEEC
Q 017573 24 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD---YGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 100 (369)
Q Consensus 24 ~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~---~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 100 (369)
+++.+++.++.-++|+|.||||||...-..++++=- ....++-+-|--|++.-+..++++...-...++-.|.+...
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 455667777888999999999999775444444311 11112246666688876666666554333333444443332
Q ss_pred CcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhcc-----CcHHHHHHHHhhCCc------c
Q 017573 101 GTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-----GFKDQIYDIFQLLPA------K 169 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-----~~~~~~~~~~~~~~~------~ 169 (369)
-.. .......|-++|-.-|++.+.+. +.+..+++||+||||.=+-. +....+-.+.+.... .
T Consensus 342 fd~------ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 342 FDG------TIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred ecc------ccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 111 12335789999999999888775 45666899999999972100 111222233333322 5
Q ss_pred CcEEEEEeeCChhHHHHHHHhcC-CCEEEEecCccccccceeEEEEEccc---hhhhHHHHHHHHHhccCCCeEEEeCCH
Q 017573 170 VQVGVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEK---EEWKLETLCDLYETLAITQSVIFVNTR 245 (369)
Q Consensus 170 ~~~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~k~lv~~~~~ 245 (369)
.+.|.||||+.-+......+++. .|-.+.++..+++ +...+..... -....+....++++.+.+.+|||+...
T Consensus 415 LKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQ 491 (1172)
T KOG0926|consen 415 LKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQ 491 (1172)
T ss_pred eeEEEEeeeEEecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeCh
Confidence 67899999997554333333433 2334444444332 1222222222 223456667788889999999999999
Q ss_pred hhHHHHHHHHhhCCCe----------------------------------------------------------------
Q 017573 246 RKVDWLTDKMRSRDHT---------------------------------------------------------------- 261 (369)
Q Consensus 246 ~~~~~~~~~l~~~~~~---------------------------------------------------------------- 261 (369)
.++..+++.|++...-
T Consensus 492 qEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~ 571 (1172)
T KOG0926|consen 492 QEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNAL 571 (1172)
T ss_pred HHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcc
Confidence 9999999998866110
Q ss_pred -----------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcE
Q 017573 262 -----------------------------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 306 (369)
Q Consensus 262 -----------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 306 (369)
+..+++-++.+.+.++++.-..|.-=++|+|+++++.+.||++..
T Consensus 572 ~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkY 651 (1172)
T KOG0926|consen 572 ADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKY 651 (1172)
T ss_pred ccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeE
Confidence 333334455666666666666676668999999999999999999
Q ss_pred EEEecCC------------------CCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 307 VINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 307 vi~~~~~------------------~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
|+..+.. -|.+..-||.|||||.| +|.||-++++.-.. ..++++...++...|
T Consensus 652 VVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~--~~Fe~fS~PEIlk~P 722 (1172)
T KOG0926|consen 652 VVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS--NDFEEFSLPEILKKP 722 (1172)
T ss_pred EEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh--cchhhhccHHHhhCc
Confidence 9976642 14566799999999995 69999999865333 234444444444333
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=3.3e-18 Score=166.01 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=82.8
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCC--eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCC--CcEEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVIN 309 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi~ 309 (369)
.+++++|+++|.+..+.+++.|..... ...++.-+++...|.++++.|++++-.||++|..+.+|+|+|+ ++.||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975432 1223333334456788999999888889999999999999996 588888
Q ss_pred ecCCCC-c-----------------------------cchhhhhcccccCCCceeEEEEeccc
Q 017573 310 YDLPTQ-P-----------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 310 ~~~~~~-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
...|.. + ..+.|.+||+.|..++.-++++.++.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887642 2 22489999999997664456666654
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.85 E-value=9.8e-18 Score=153.03 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhc----CCCcEEEEecCCcCCCC
Q 017573 225 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLITTDLLARGID 300 (369)
Q Consensus 225 ~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vli~t~~~~~G~d 300 (369)
.+..++.. ..++++|.+.|...++.+++.|...-.-..++.|+. ..+..++++|+. |...||++|..+.+|+|
T Consensus 461 ~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 461 STAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 33344333 457999999999999999999976433334555533 245668888876 46789999999999999
Q ss_pred C--------CC--CcEEEEecCCCCc-------------------------cchhhhhcccccCCCc--eeEEEEeccc
Q 017573 301 V--------QQ--VSLVINYDLPTQP-------------------------ENYLHRIGRSGRFGRK--GVAINFVTRD 342 (369)
Q Consensus 301 ~--------~~--~~~vi~~~~~~~~-------------------------~~~~Q~~GR~~R~~~~--~~~~~~~~~~ 342 (369)
+ |+ ++.||+...|+.+ ..+.|.+||..|...+ --++.+.++.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 9 33 8889988877432 2368999999998765 3344444544
No 135
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=2.3e-19 Score=157.98 Aligned_cols=305 Identities=18% Similarity=0.257 Sum_probs=196.6
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCc-cEEEEcCCHHHHHHHHHHHH-HhccccCcEEEE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC-QALVLAPTRELAQQIEKVMR-ALGDYLGVKVHA 97 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~-~~liv~P~~~l~~q~~~~~~-~~~~~~~~~v~~ 97 (369)
-.++.+++..+.+++-++|.++||||||......++. .+.... -+-.--|++.-+...++... ++...+|..|.+
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~e---dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYE---DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHh---cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 3456666777778899999999999999875443332 222221 23333488877777766654 343444545544
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC---CccCcEEE
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL---PAKVQVGV 174 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~---~~~~~~i~ 174 (369)
...-.... .....|=++|-..|++...... .+.++++||+||||+=.-. ...+.-+++.. ....++|.
T Consensus 435 sIRFEdvT------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslN--tDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 435 SIRFEDVT------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLN--TDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred EEEeeecC------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccc--hHHHHHHHHHHHHhhccceEEE
Confidence 33222111 1235678899888876544433 3455799999999973211 12222222221 23667999
Q ss_pred EEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH---HhccCCCeEEEeCCHhhHHHH
Q 017573 175 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY---ETLAITQSVIFVNTRRKVDWL 251 (369)
Q Consensus 175 ~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~k~lv~~~~~~~~~~~ 251 (369)
+|||+. ...+...+.+-|......+.. .+...+...+-.+.....+...+ ...+.+.+|||....+..+..
T Consensus 506 tSATm~--a~kf~nfFgn~p~f~IpGRTy----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 506 TSATMD--AQKFSNFFGNCPQFTIPGRTY----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred eecccc--HHHHHHHhCCCceeeecCCcc----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 999985 334444444355444332221 22333333333333334444433 334567899999998877665
Q ss_pred HHHHhhC----------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC---------
Q 017573 252 TDKMRSR----------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------- 312 (369)
Q Consensus 252 ~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------- 312 (369)
+..+... +..+..+++.++..-+.++++.-..|.-+++|+|+++++.+.+|++..||..+.
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~ 659 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR 659 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc
Confidence 5554322 567889999999999999988777788889999999999999999999997653
Q ss_pred ---------CCCccchhhhhcccccCCCceeEEEEecccc
Q 017573 313 ---------PTQPENYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 313 ---------~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
|-|-+...||.|||||+ .+|.||-+++...
T Consensus 660 ~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 660 IGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTEDA 698 (1042)
T ss_pred cccceeEEEechhccchhhccccCCC-CCcceeeehhhhH
Confidence 44667789999999999 4799999998753
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=6.2e-19 Score=162.69 Aligned_cols=273 Identities=15% Similarity=0.133 Sum_probs=175.4
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.|.-+. +.-.++-+..+.||.|||+++.++++-....+. .+.||+++.-|+.+-++++..++..+|+.+..
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~---~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALTGK---GVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhcCC---ceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 4666665554 444677899999999999999887754333333 79999999999999999999999999999998
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHH-HHHHcCCC------CCCCccEEEEechhHhh-ccC---------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVF-DMLRRQSL------RPDYIKMFVLDEADEML-SRG--------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~-~~~~~~~~------~~~~~~~viiDE~H~~~-~~~--------------- 154 (369)
..++.+....+... .+||+++|...|- ..++..-. ....+.++|+||++.+. +..
T Consensus 151 i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~ 228 (870)
T CHL00122 151 IQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNID 228 (870)
T ss_pred eCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchH
Confidence 88777765554433 4789999998763 34433211 23457899999999754 100
Q ss_pred cHHHHHHHHhhCCc------------------------------------------------------------------
Q 017573 155 FKDQIYDIFQLLPA------------------------------------------------------------------ 168 (369)
Q Consensus 155 ~~~~~~~~~~~~~~------------------------------------------------------------------ 168 (369)
.......+...+..
T Consensus 229 ~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV 308 (870)
T CHL00122 229 KYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEI 308 (870)
T ss_pred HHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEE
Confidence 00000000000000
Q ss_pred --------------------------------------------------cCcEEEEEeeCChhHHHHHHHhcCCCEEEE
Q 017573 169 --------------------------------------------------KVQVGVFSATMPPEALEITRKFMNKPVRIL 198 (369)
Q Consensus 169 --------------------------------------------------~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 198 (369)
-.++.+||+|..... ......++-.+...
T Consensus 309 ~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~-~Ef~~iY~l~vv~I 387 (870)
T CHL00122 309 IIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEE-LEFEKIYNLEVVCI 387 (870)
T ss_pred EEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHH-HHHHHHhCCCEEEC
Confidence 046778999986544 34445555444443
Q ss_pred ecCccccccceeEEEEEccchhhhHHHHHHHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCC-C-HHHHH
Q 017573 199 VKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM-D-QNTRD 275 (369)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~r~ 275 (369)
....+.........++. .........+.++...+ .+.++||-+.+++..+.+++.|.+.+.+..++++.. . ..+ .
T Consensus 388 Ptnkp~~R~d~~d~v~~-t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~E-A 465 (870)
T CHL00122 388 PTHRPMLRKDLPDLIYK-DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRE-S 465 (870)
T ss_pred CCCCCccceeCCCeEEe-CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhH-H
Confidence 33222222222222221 22222223344444443 456999999999999999999999999999999973 2 333 3
Q ss_pred HHHHHHhcCC-CcEEEEecCCcCCCCCC
Q 017573 276 IIMREFRSGS-SRVLITTDLLARGIDVQ 302 (369)
Q Consensus 276 ~~~~~f~~~~-~~vli~t~~~~~G~d~~ 302 (369)
+++.+ .|. -.|.|||+++++|.||.
T Consensus 466 ~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 466 EIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHh--cCCCCcEEEeccccCCCcCee
Confidence 34443 343 35999999999999974
No 137
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.84 E-value=3.6e-19 Score=136.01 Aligned_cols=144 Identities=40% Similarity=0.560 Sum_probs=112.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
+++++.+|||+|||.+++..+........ .+++++++|++.++.|+.+.+...... +..+....+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 46899999999999998888887766533 338999999999999999999887654 6777777777665555445566
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
..+++++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888877655556689999999999876664443333344456678899999997
No 138
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=3.3e-19 Score=157.47 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=91.1
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhc--CCCcEEEE-ecCCcCCCCCCCCcEEEEe
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLIT-TDLLARGIDVQQVSLVINY 310 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~-t~~~~~G~d~~~~~~vi~~ 310 (369)
...|++|...-.+...-+...|.+.|.....++|.....+|.++++.|+. |..+|++. -.+.+.|+|+-+.+|+|++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44567777777777788889999999999999999999999999999974 44666654 4688999999999999999
Q ss_pred cCCCCccchhhhhcccccCCCceeEEEEe
Q 017573 311 DLPTQPENYLHRIGRSGRFGRKGVAINFV 339 (369)
Q Consensus 311 ~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~ 339 (369)
+..|++.--.|++.|..|.|++..++++-
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 99999999999999999999988777653
No 139
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.83 E-value=4.4e-20 Score=147.45 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=103.0
Q ss_pred CCcHhhhhhhhcccc-------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 18 KPSAIQQRGIVPFCK-------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~-------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
.||++|.+++..+.+ .+++++.+|||+|||.+++..+..... ++++++|+.+|..|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999999884 689999999999999998765555443 7999999999999999999766443
Q ss_pred cCcEEEE------------EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC-----------CCCCCccEEEEech
Q 017573 91 LGVKVHA------------CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-----------LRPDYIKMFVLDEA 147 (369)
Q Consensus 91 ~~~~v~~------------~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~-----------~~~~~~~~viiDE~ 147 (369)
. ..... ..................+++++|++.+........ .....++++|+|||
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 K-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp S-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred h-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 2 11111 111111112223345578999999999987765422 12234789999999
Q ss_pred hHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 148 DEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 148 H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
|++..... ...+.. .+...+++|||||.
T Consensus 156 H~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 99865442 333333 45667899999985
No 140
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=2.4e-20 Score=170.54 Aligned_cols=321 Identities=18% Similarity=0.189 Sum_probs=215.3
Q ss_pred CCCCCcHhhhhhhhcccc----CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 15 GFEKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
...++.+||.+.++.+.. +-+.++..+||.|||...+..+...+......+..+|+||+..|.. |..+|.+|...
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS 469 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS 469 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccc
Confidence 335899999999988763 4678999999999998888777777776666668999999988875 67777777543
Q ss_pred cCcEEEEEECCcchH--HHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCc
Q 017573 91 LGVKVHACVGGTSVR--EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 168 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~--~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~ 168 (369)
+......|..... ....+.....+|+++|++.... ....+..-.|.++||||.|++.+. ...+...++..-.
T Consensus 470 --v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 470 --VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYR 543 (1157)
T ss_pred --eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhcccc
Confidence 3333333322211 1122334689999999988754 222222334789999999999544 3445555553333
Q ss_pred cCcEEEEEeeCChhHHH------------------HHHHhcCCCEEEEec-----C------------------------
Q 017573 169 KVQVGVFSATMPPEALE------------------ITRKFMNKPVRILVK-----R------------------------ 201 (369)
Q Consensus 169 ~~~~i~~saT~~~~~~~------------------~~~~~~~~~~~~~~~-----~------------------------ 201 (369)
....+++|+||..+... .+..|+..|..-... .
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 44467789998533211 112222211100000 0
Q ss_pred --ccccccc-----------------------------------------------------------eeEEEE------
Q 017573 202 --DELTLEG-----------------------------------------------------------IKQFYV------ 214 (369)
Q Consensus 202 --~~~~~~~-----------------------------------------------------------~~~~~~------ 214 (369)
+...|.. +...+.
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~ 703 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIK 703 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChh
Confidence 0000000 000000
Q ss_pred EccchhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCC---cEE
Q 017573 215 NVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS---RVL 289 (369)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vl 289 (369)
.+-+...+.+.+..++-+. .+.+++.|+.-..-...+..+|.-.+++...+.|....++|...++.|+..+. .+|
T Consensus 704 dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fl 783 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFL 783 (1157)
T ss_pred HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeee
Confidence 0000111455555655433 45688999998888899999999889999999999999999999999987553 467
Q ss_pred EEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccc
Q 017573 290 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 290 i~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
++|.+.+.|+|+.-++.||+++..|++....|+.-|+.|.|+...+-++.-..
T Consensus 784 lstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 784 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred eeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 78999999999999999999999999999999999999999876666555544
No 141
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.7e-19 Score=156.01 Aligned_cols=357 Identities=15% Similarity=0.118 Sum_probs=236.3
Q ss_pred HHHH-HHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 7 LLRG-IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 7 i~~~-l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
+.+. ++.+..+..+.+|.++++.+-+|++.++.-.+.+||++++.++........... ..+++.|+.+++++..+-+.
T Consensus 274 ~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 274 SIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-NSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-ceecchhHHHHhhccCCceE
Confidence 3444 466777889999999999999999999999999999999988877666554433 78999999998876655332
Q ss_pred Hhcccc---CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCC----ccEEEEechhHhhccC--c-
Q 017573 86 ALGDYL---GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY----IKMFVLDEADEMLSRG--F- 155 (369)
Q Consensus 86 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~----~~~viiDE~H~~~~~~--~- 155 (369)
-..... .--+.-...+........+...+.+++++.+.........+...... ..+++.||+|.+.... .
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 111100 11122222333334455555667899999998887655443333222 4578999999765322 1
Q ss_pred H---HHHHHHHhhC--CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc-cccccceeEEEEEccc------hhhhH
Q 017573 156 K---DQIYDIFQLL--PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVEK------EEWKL 223 (369)
Q Consensus 156 ~---~~~~~~~~~~--~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~ 223 (369)
. +.+..+...+ ..+.+++-.++|..... .....+.+-.....+..+ ........-.|..... .+.++
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~-~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i 511 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRT-RLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKV 511 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHH-HHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHH
Confidence 1 1222222222 23677887788775444 444455444333332222 2222222222221111 12233
Q ss_pred HHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhC----CC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 017573 224 ETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR----DH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 293 (369)
Q Consensus 224 ~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 293 (369)
....+++... .+-++|.||++++-++-+....+.. +. .+..+.|+.+.++|.++....-.|+..-+|+|.
T Consensus 512 ~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTN 591 (1034)
T KOG4150|consen 512 VEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATN 591 (1034)
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecc
Confidence 3344444332 3458999999999888665544322 22 466788999999999999999999999999999
Q ss_pred CCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEec--cccHHHHHHHHHHhccccccCCcch
Q 017573 294 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT--RDDERMLFDIQKFYNVVIEELPSNV 365 (369)
Q Consensus 294 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
+++-|+|+..++.|+..+.|.|...+.|..||+||.++++.++.+.. +-|..++..-...+...+.++.-++
T Consensus 592 ALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 592 ALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred hhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEec
Confidence 99999999999999999999999999999999999988865554443 5577777777777777777665444
No 142
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.82 E-value=3e-19 Score=134.22 Aligned_cols=118 Identities=44% Similarity=0.721 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhcc--CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCC
Q 017573 221 WKLETLCDLYETLA--ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298 (369)
Q Consensus 221 ~~~~~l~~~~~~~~--~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 298 (369)
.+...+..++.... ++++|||+++.+.++.+++.|.+.+..+..+||++++.+|..+++.|.++...++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56677777776653 6799999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEE
Q 017573 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 338 (369)
Q Consensus 299 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 338 (369)
+|+|.+++|++++++++..++.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 143
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=161.60 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEecCCcC
Q 017573 222 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS--SRVLITTDLLAR 297 (369)
Q Consensus 222 ~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vli~t~~~~~ 297 (369)
|++.|.-+++.. .+.++|||+.-.+....+..+|.-+|+....+.|..+.++|...++.|+.+. .++|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 667777777654 3458999999999999999999999999999999999999999999999865 467788999999
Q ss_pred CCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEE--Eeccc
Q 017573 298 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN--FVTRD 342 (369)
Q Consensus 298 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~--~~~~~ 342 (369)
|+|+.+++.||+||..||+..=.|+--|..|.|+...+.+ +++..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999999999999999887655544 45544
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=7.1e-19 Score=151.61 Aligned_cols=284 Identities=18% Similarity=0.186 Sum_probs=184.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
+=++-+|||.||||.-| ++++.... +.+|.-|.+-|+.+.++.+++. |+.+..++|.+......+ .+
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~ 258 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GN 258 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CC
Confidence 33677899999999765 34444333 7899999999999999998876 666767777554322211 23
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCC
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK 193 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~ 193 (369)
.++.+=+|.|+.. ....+++.|+||++++.+.+..-.+.+.+-.+...- +-+.+-| ...++.+..+..
T Consensus 259 ~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE--iHLCGep--svldlV~~i~k~ 326 (700)
T KOG0953|consen 259 PAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE--IHLCGEP--SVLDLVRKILKM 326 (700)
T ss_pred cccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh--hhccCCc--hHHHHHHHHHhh
Confidence 4677778876653 223479999999999987665444444433332211 2223333 344455555442
Q ss_pred CEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCe-eEEecCCCCHH
Q 017573 194 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQN 272 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 272 (369)
.. ..+....+..-......+.+..-++....+.|+| |-|++....+.+.+++.+.. +++++|.++++
T Consensus 327 TG-----------d~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 327 TG-----------DDVEVREYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPE 394 (700)
T ss_pred cC-----------CeeEEEeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCc
Confidence 11 0111111111111112223333444555566655 45677888899999888665 99999999999
Q ss_pred HHHHHHHHHhc--CCCcEEEEecCCcCCCCCCCCcEEEEecCC---------CCccchhhhhcccccCCCc---eeEEEE
Q 017573 273 TRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDLP---------TQPENYLHRIGRSGRFGRK---GVAINF 338 (369)
Q Consensus 273 ~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~~---------~~~~~~~Q~~GR~~R~~~~---~~~~~~ 338 (369)
.|......|++ ++.+|||||+++++|+|+ +++.||++... .+..+..|..|||||.|.. |.+-++
T Consensus 395 Tr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 395 TRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred hhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 99999999987 789999999999999998 78888888753 3556789999999998643 544444
Q ss_pred eccccHHHHHHHHHHhccccc
Q 017573 339 VTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~ 359 (369)
. .+.+..+.+.++...+
T Consensus 474 ~----~eDL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 474 H----SEDLKLLKRILKRPVE 490 (700)
T ss_pred e----HhhHHHHHHHHhCCch
Confidence 3 3444555555554443
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.5e-17 Score=153.50 Aligned_cols=273 Identities=17% Similarity=0.180 Sum_probs=172.6
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.|++.| ++-.+.-.+.-+..+.||.|||+++.++++-....+. .+-||+++.-|+..=++++..+...+|+.|..
T Consensus 85 r~ydVQ--liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQ--LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhH--HHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 344444 4444444677899999999999999887776555444 79999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcC------CCCCCCccEEEEechhHhh-ccC---------------
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SRG--------------- 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~-~~~--------------- 154 (369)
..++......+. .-.+||+++|...| +..++.. ......+.+.|+||++.+. +..
T Consensus 160 i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~ 237 (939)
T PRK12902 160 IQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQE 237 (939)
T ss_pred ECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchH
Confidence 877666554443 33689999999887 2333221 1223557899999999754 100
Q ss_pred cHHHHHHHHhhCCc--------------c---------------------------------------------------
Q 017573 155 FKDQIYDIFQLLPA--------------K--------------------------------------------------- 169 (369)
Q Consensus 155 ~~~~~~~~~~~~~~--------------~--------------------------------------------------- 169 (369)
.......+...+.. .
T Consensus 238 ~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYi 317 (939)
T PRK12902 238 KYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYI 317 (939)
T ss_pred HHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEE
Confidence 00000111100000 0
Q ss_pred ---------------------------------------------------------CcEEEEEeeCChhHHHHHHHhcC
Q 017573 170 ---------------------------------------------------------VQVGVFSATMPPEALEITRKFMN 192 (369)
Q Consensus 170 ---------------------------------------------------------~~~i~~saT~~~~~~~~~~~~~~ 192 (369)
.++.+||+|......+ ....++
T Consensus 318 V~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~E-f~~iY~ 396 (939)
T PRK12902 318 VRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVE-FEKTYK 396 (939)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHH-HHHHhC
Confidence 4566777777544433 334444
Q ss_pred CCEEEEecCccccccceeEEEEEccchhhhHHHHH-HHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCC-
Q 017573 193 KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLC-DLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM- 269 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 269 (369)
-++.......+.........++ .+...+...+. ++...+ .+.++||-+.|++..+.+++.|.+.+++..++++..
T Consensus 397 l~Vv~IPTnkP~~R~d~~d~vy--~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~ 474 (939)
T PRK12902 397 LEVTVIPTNRPRRRQDWPDQVY--KTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPE 474 (939)
T ss_pred CcEEEcCCCCCeeeecCCCeEE--cCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCc
Confidence 4433332222222211111121 12223333443 444433 467999999999999999999999999999999972
Q ss_pred CHHHHHHHHHHHhcCC-CcEEEEecCCcCCCCCC
Q 017573 270 DQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQ 302 (369)
Q Consensus 270 ~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~ 302 (369)
..+.-.+++.+ .|. -.|.|||+++++|.||.
T Consensus 475 ~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 475 NVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 22222334432 444 34999999999999974
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=2.1e-16 Score=150.15 Aligned_cols=75 Identities=24% Similarity=0.218 Sum_probs=64.0
Q ss_pred hCCCCCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 13 AYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.|+|..+||.|.+....+. +++++++.+|||+|||++.+.+++......+...+++|.+.+.+=..|..+++++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4889888999999887765 57999999999999999999999987764443458999999999999999999884
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.78 E-value=7.8e-17 Score=152.98 Aligned_cols=113 Identities=15% Similarity=0.299 Sum_probs=82.1
Q ss_pred HHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEecCCcCCCCCCC
Q 017573 226 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQ 303 (369)
Q Consensus 226 l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~ 303 (369)
+..++...+ ++++||++|.+.++.+.+.+...... .....+. ..+.+.++.|..+.- -+++++..+.+|+|+|+
T Consensus 471 i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 333444334 59999999999999999999876553 2333333 334478888876554 79999999999999996
Q ss_pred --CcEEEEecCCCC------------------------------ccchhhhhcccccCCCceeEEEEeccc
Q 017573 304 --VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 304 --~~~vi~~~~~~~------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
++.|++.+.|.- ...+.|.+||+.|..++.-++++++..
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 688888887642 234699999999986665555555553
No 148
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.78 E-value=4e-18 Score=150.84 Aligned_cols=124 Identities=21% Similarity=0.316 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEecCCcCC
Q 017573 222 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITTDLLARG 298 (369)
Q Consensus 222 ~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~G 298 (369)
++..+.+++.+. .+-++|+|+.-.+...-+.++|.-.++....+.|...-.+|..++..|+..++- +|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 344455555443 234788999888889999999999999999999999999999999999987765 56788999999
Q ss_pred CCCCCCcEEEEecCCCCccchhhhhcccccCCCc--eeEEEEeccccHH
Q 017573 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDER 345 (369)
Q Consensus 299 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~~ 345 (369)
+|+..++.||+++..|++..-.|++.|+.|.|+. .+++-+......+
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 9999999999999999999999999999999976 4566677766444
No 149
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=2.7e-17 Score=153.84 Aligned_cols=312 Identities=16% Similarity=0.191 Sum_probs=208.5
Q ss_pred CCcHhhhhhhhcccc-CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH-HhccccCcEE
Q 017573 18 KPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR-ALGDYLGVKV 95 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~-~~~~~~~~~v 95 (369)
...+.|.+.++-+.+ ++++++.+|+|||||.++-++++. .. ...+++++.|.-+.+..+++.|. ++....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~-~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---PD-TIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---Cc-cceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 348899999998886 478999999999999999888876 22 22389999999999887777664 4555568888
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH------HHHHHHHhhCCcc
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK------DQIYDIFQLLPAK 169 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~------~~~~~~~~~~~~~ 169 (369)
..+.|....+.. +....+++|+||++|-.. . ..+..++.|.||.|.+.+.. . -....+...+-++
T Consensus 1219 ~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHHHHhh
Confidence 888887764432 234568999999999654 2 44558999999999876322 1 1145556666677
Q ss_pred CcEEEEEeeCChhHHHHHHHhcCCCEEEEecC-ccccccceeEEEEEccchhh----hHHHHHHHHHhc--cCCCeEEEe
Q 017573 170 VQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFYVNVEKEEW----KLETLCDLYETL--AITQSVIFV 242 (369)
Q Consensus 170 ~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~k~lv~~ 242 (369)
.+++++|.... +..++ ..+.....+.... ....|..+....+....... +.+-...-+.++ ..++.+||+
T Consensus 1290 ir~v~ls~~la-na~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1290 IRVVALSSSLA-NARDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eeEEEeehhhc-cchhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 78898887764 44444 1222222222221 11222222222222211111 111122222222 446899999
Q ss_pred CCHhhHHHHHHHHhhC----------------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCC
Q 017573 243 NTRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300 (369)
Q Consensus 243 ~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 300 (369)
++++++..++..|-.. ..+.++-|.+++..+...+-..|..|.+.|+|.+.. ..|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 9999988664433211 233444488899999999999999999999998887 77877
Q ss_pred CCCCcEEEEec-----------CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 301 VQQVSLVINYD-----------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 301 ~~~~~~vi~~~-----------~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
.. .+.|+..+ .+.+.....|+.|++.| .|.|+++.+.++.++++++
T Consensus 1446 ~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1446 LK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 63 44455443 24567788999999998 5889999999988877654
No 150
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.77 E-value=5.7e-17 Score=138.20 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=91.9
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EecCCcCCCCCCCCcEEEEecCC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVINYDLP 313 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~G~d~~~~~~vi~~~~~ 313 (369)
-|.|||........-+.=.|.+.|+.+..+.|.|++..|...++.|.++ +++|++ +-.+.+..+|+..+++|++.+|=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4778888877777777777888899999999999999999999999886 455554 55688888999999999999999
Q ss_pred CCccchhhhhcccccCCCc--eeEEEEeccccH
Q 017573 314 TQPENYLHRIGRSGRFGRK--GVAINFVTRDDE 344 (369)
Q Consensus 314 ~~~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~ 344 (369)
|++..-.|+..|..|.|+. -.++.|+-++..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 9999999999999999865 567777776543
No 151
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=1.7e-16 Score=153.29 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=170.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
+..+||+.+|||||++++..+- .+......+++++||-++.|..|+.+.+..+........ ...+....++.+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 5799999999999998654444 444446666999999999999999999998865432222 34444455555553
Q ss_pred -CCcEEEeccHHHHHHHHcCC-C-CCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHH-HHH
Q 017573 114 -GVHVVVGTPGRVFDMLRRQS-L-RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEI-TRK 189 (369)
Q Consensus 114 -~~~iiv~t~~~l~~~~~~~~-~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~-~~~ 189 (369)
...|+|||.++|........ . ....--++|+||||+. ++......+...++ +...+++|+||....... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 34899999999987776541 1 1112248999999984 44444445555554 366899999996433222 244
Q ss_pred hcCCCEEEEecCccccccceeEEEEEcc-chhh-------------------------------------------hHHH
Q 017573 190 FMNKPVRILVKRDELTLEGIKQFYVNVE-KEEW-------------------------------------------KLET 225 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------------------------~~~~ 225 (369)
.++.........+......+-..++... ..+. ..+.
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 4555544444433333333222222221 0000 0011
Q ss_pred HHHHH----H-hccCCCeEEEeCCHhhHHHHHHHHhhCCCe----------eEEe-------------cCCCCHHHHHHH
Q 017573 226 LCDLY----E-TLAITQSVIFVNTRRKVDWLTDKMRSRDHT----------VSAT-------------HGDMDQNTRDII 277 (369)
Q Consensus 226 l~~~~----~-~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~----------~~~~-------------~~~~~~~~r~~~ 277 (369)
..++. . .....++.+.++++.-+..+.+........ +..+ +.. ....+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhh
Confidence 11111 1 112347778888877444444333222000 0000 011 12223334
Q ss_pred HHHH--hcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC
Q 017573 278 MREF--RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 278 ~~~f--~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
...| .+.+.++||.++++-+|+|.|.++.+++.. |.-.-.++|++.|+.|.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK-~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK-PLKYHNLIQAISRTNRV 636 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEEecc-ccccchHHHHHHHhccC
Confidence 4443 345789999999999999999999998555 46677999999999996
No 152
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.3e-18 Score=117.45 Aligned_cols=78 Identities=47% Similarity=0.814 Sum_probs=75.3
Q ss_pred HHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCC
Q 017573 253 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 330 (369)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 330 (369)
++|+..++++..+||+++..+|.++++.|++++..+|++|+++++|+|+|.+++|+++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999986
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.76 E-value=3.5e-15 Score=140.67 Aligned_cols=106 Identities=20% Similarity=0.354 Sum_probs=77.8
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEecCCcCCCCCCC--CcEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDVQQ--VSLV 307 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~--~~~v 307 (369)
..+.++|+++|.+..+.+++.|......-....+. ..+.++++.|+ .++..||++|..+.+|+|+|+ ++.|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 34568999999999999999987532222344443 24667887776 466779999999999999996 7889
Q ss_pred EEecCCCC-c-----------------------------cchhhhhcccccCCCceeEEEEeccc
Q 017573 308 INYDLPTQ-P-----------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 308 i~~~~~~~-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
|+.+.|.. + ..+.|.+||+.|..++.-++++.++.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99887642 1 13589999999997664455566654
No 154
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.3e-16 Score=135.74 Aligned_cols=298 Identities=17% Similarity=0.240 Sum_probs=179.0
Q ss_pred hhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH-hccccCcEEEEEECC
Q 017573 23 QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGG 101 (369)
Q Consensus 23 Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~v~~~~~~ 101 (369)
+.+-.+.+.+++-+++.++||+|||...-.+.+........ .+.---|++.-+.+.+.+..+ +.-.+|-.|.....-
T Consensus 52 k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~--~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrf 129 (699)
T KOG0925|consen 52 KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT--GVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRF 129 (699)
T ss_pred HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc--ceeecCchHHHHHHHHHHHHHHhccccchhccccccc
Confidence 33344455567889999999999997765555555443331 344444787777766665543 222223333332222
Q ss_pred cchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh--ccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 102 TSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~--~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
...... +.-.-++|-.+|++....... +..++++|+||+|+=. .......+..+...- +..+++.||||.
T Consensus 130 EdC~~~------~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl 201 (699)
T KOG0925|consen 130 EDCTSP------NTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATL 201 (699)
T ss_pred cccCCh------hHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeeccc
Confidence 111111 111224566666665555443 4557999999999722 121223333444443 478899999998
Q ss_pred ChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccch---hhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHh
Q 017573 180 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE---EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 256 (369)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~ 256 (369)
... .+-..+.+.|. ..+.. ....+.+|..-... +..++.+.++...-..+.+++|..+.++.+..++.+.
T Consensus 202 ~a~--Kfq~yf~n~Pl-l~vpg----~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~ 274 (699)
T KOG0925|consen 202 DAE--KFQRYFGNAPL-LAVPG----THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKIS 274 (699)
T ss_pred chH--HHHHHhCCCCe-eecCC----CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHH
Confidence 543 33333334443 22221 11222233322222 2334555555555567899999999999999988887
Q ss_pred hC---------CCeeEEecCCCCHHHHHHHHHHHh---cCC--CcEEEEecCCcCCCCCCCCcEEEEec-----------
Q 017573 257 SR---------DHTVSATHGDMDQNTRDIIMREFR---SGS--SRVLITTDLLARGIDVQQVSLVINYD----------- 311 (369)
Q Consensus 257 ~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~~~--~~vli~t~~~~~G~d~~~~~~vi~~~----------- 311 (369)
+. ..++..++ +..+..+++--. +|. -+|+|+|.+++..+.++++.+||.-+
T Consensus 275 re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRI 350 (699)
T KOG0925|consen 275 REVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRI 350 (699)
T ss_pred HHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcce
Confidence 55 23455555 333333322221 222 36999999999999999999998654
Q ss_pred -------CCCCccchhhhhcccccCCCceeEEEEeccc
Q 017573 312 -------LPTQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 312 -------~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
.|-|..+..||.||+||+ .+|.|+.++++.
T Consensus 351 Rvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 351 RVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 255778889999999998 789999999864
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.7e-16 Score=148.10 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=94.7
Q ss_pred hHHHHHH-HHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCC
Q 017573 222 KLETLCD-LYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 299 (369)
Q Consensus 222 ~~~~l~~-~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 299 (369)
+...+.+ +...+ .+.++||-+.|++..+.+++.|...+++..++++.....+...+-+.-+. -.|.|||+++++|.
T Consensus 613 K~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGT 690 (1112)
T PRK12901 613 KYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGT 690 (1112)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCc
Confidence 4444443 33333 55799999999999999999999999999999888665554444333222 34999999999999
Q ss_pred CCC--------CCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 300 DVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 300 d~~--------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
||. +-=+||....+.|...-.|..||+||.|.+|.+..|++-.|.-
T Consensus 691 DIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 691 DIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred CcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 986 3456777788889999999999999999999999888866543
No 156
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.74 E-value=4.5e-16 Score=141.98 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=97.1
Q ss_pred HHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhC----------------------CCeeEEecCCCCHHHHHHHH
Q 017573 223 LETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDIIM 278 (369)
Q Consensus 223 ~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~ 278 (369)
+-.|.++++.. -+.|.|||..+.....-+..+|... |.....+.|......|.+..
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 33445555443 3468999999998888887777532 45678889999999999999
Q ss_pred HHHhcCC-C---cEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEec
Q 017573 279 REFRSGS-S---RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 340 (369)
Q Consensus 279 ~~f~~~~-~---~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~ 340 (369)
++|++.. . ..||+|.+.+-|+|+-.++.||+++..|++.-=.|.+=|+.|.|+...||+|-.
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 9998743 2 388999999999999999999999999999999999999999999888877654
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.71 E-value=3.8e-15 Score=136.44 Aligned_cols=290 Identities=13% Similarity=0.133 Sum_probs=183.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
.-.+|.+|+|+|||....-++.+.+.. ...++++|+.+++|+.++.+.++...-. ++.......+. .+...
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~------~i~~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDY------IIDGR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccc------ccccc
Confidence 446999999999998876666655432 2338999999999999999999865221 22211111111 11112
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHH-------HHHHHhhCCccCcEEEEEeeCChhHHHH
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQ-------IYDIFQLLPAKVQVGVFSATMPPEALEI 186 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~-------~~~~~~~~~~~~~~i~~saT~~~~~~~~ 186 (369)
.++-+++..+++.+.... ...++|+||+||+-...+.-+... ...+...+.....+|++-|+......++
T Consensus 121 ~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhcccc---cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 467888999998765422 344589999999998765433322 2233444566778999999999988888
Q ss_pred HHHhcCCC-EEEEecCcccc-ccceeEEEE---------------------------------EccchhhhHHHHHHHHH
Q 017573 187 TRKFMNKP-VRILVKRDELT-LEGIKQFYV---------------------------------NVEKEEWKLETLCDLYE 231 (369)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~ 231 (369)
+..+.+.. +.+....-... ..+-.-.+. ..............+..
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 88865532 22222110000 000000000 00000112334444554
Q ss_pred hc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCC--CcEEE
Q 017573 232 TL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVI 308 (369)
Q Consensus 232 ~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi 308 (369)
+. .++++.||+++...++.+++..+....++..+++..+..+. +.| ++++|++-|+.+..|+++.. .+.|+
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEEE
Confidence 44 34577789999999999999999988899999887655532 223 45789999999999999864 34455
Q ss_pred EecCC----CCccchhhhhcccccCCCceeEEEEeccc
Q 017573 309 NYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 309 ~~~~~----~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
.+--| .+..+..|++||+ |.-.....+++++..
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 44222 2334579999999 444667788887765
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.70 E-value=3.9e-15 Score=137.96 Aligned_cols=299 Identities=12% Similarity=0.078 Sum_probs=173.7
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHH----HHHHHc
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE----DQRILQ 112 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~ 112 (369)
+..+.+|||||.+++-.+.+.+..++ .+|+++|..+|..|+.+.|++.+. +..+..++++.+..+ +.....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 44444699999999888888887765 899999999999999999998763 246777887766543 344456
Q ss_pred cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-----cH-HHHHHHHhhCCccCcEEEEEeeCChhHHHH
Q 017573 113 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----FK-DQIYDIFQLLPAKVQVGVFSATMPPEALEI 186 (369)
Q Consensus 113 ~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-----~~-~~~~~~~~~~~~~~~~i~~saT~~~~~~~~ 186 (369)
+...|+|+|...++- -..++++||+||=|.-+..+ |. +.+...... ..+..+++.||||+-+....
T Consensus 239 G~~~IViGtRSAvFa-------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAVFA-------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeEEe-------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHH
Confidence 778999999877763 34458999999999755322 11 233333333 34677899999998766544
Q ss_pred HHHhcCCCEEEEecCccccccceeEEEEE---c-----cch-hhhHHHHHHHHHhccCCCeEEEeCCHhhHHH-------
Q 017573 187 TRKFMNKPVRILVKRDELTLEGIKQFYVN---V-----EKE-EWKLETLCDLYETLAITQSVIFVNTRRKVDW------- 250 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~-~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~------- 250 (369)
....................+.+.-.-.. . ... ..-...+..+-+....+++|+|.|.+-.+-.
T Consensus 311 ~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg 390 (665)
T PRK14873 311 VESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCR 390 (665)
T ss_pred HhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCc
Confidence 43221111100000000111111111000 0 000 0011223333333334488888887754332
Q ss_pred ----------------------------------------------------HHHHHhhCCC--eeEEecCCCCHHHHHH
Q 017573 251 ----------------------------------------------------LTDKMRSRDH--TVSATHGDMDQNTRDI 276 (369)
Q Consensus 251 ----------------------------------------------------~~~~l~~~~~--~~~~~~~~~~~~~r~~ 276 (369)
+.+.|.+... ++... +++.
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~-------d~d~ 463 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS-------GGDQ 463 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-------ChHH
Confidence 2222222211 12221 2345
Q ss_pred HHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC------------CccchhhhhcccccCCCceeEEEEeccccH
Q 017573 277 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDDE 344 (369)
Q Consensus 277 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 344 (369)
+++.|. ++.+|||+|+.++.=+. ++...|.+++... ....+.|..||+||..+.|.+++.. ..+.
T Consensus 464 ~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~ 540 (665)
T PRK14873 464 VVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSL 540 (665)
T ss_pred HHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCC
Confidence 778886 48999999993221122 3567776665321 2344589999999998999999886 4444
Q ss_pred HHHHHH-----HHHhcccc
Q 017573 345 RMLFDI-----QKFYNVVI 358 (369)
Q Consensus 345 ~~~~~~-----~~~~~~~~ 358 (369)
..++.+ ..|++.++
T Consensus 541 ~~~~~l~~~d~~~F~~~EL 559 (665)
T PRK14873 541 PTVQALIRWDPVGHAEREL 559 (665)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 444433 34555444
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.69 E-value=3.6e-15 Score=140.12 Aligned_cols=309 Identities=17% Similarity=0.145 Sum_probs=180.8
Q ss_pred CCcHhhhhhhhcccc--------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 18 KPSAIQQRGIVPFCK--------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~--------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
.-..+|.+|++.+.. |--++--|.||+|||++= .-|+..+.....+.++.|..-.++|.-|+-+.+++-..
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 456789999987763 223577899999999874 34455566656666788888888888888777776543
Q ss_pred ccCcEEEEEECCcchHHH-------------------------------------------HHHHcc--------CCcEE
Q 017573 90 YLGVKVHACVGGTSVRED-------------------------------------------QRILQA--------GVHVV 118 (369)
Q Consensus 90 ~~~~~v~~~~~~~~~~~~-------------------------------------------~~~~~~--------~~~ii 118 (369)
-...+..++.|+....+. ...+.. .+.+.
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 333334444433221110 001110 25799
Q ss_pred EeccHHHHHHHHc--CCC------CCCCccEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEEEEeeCChhHHHHHHH
Q 017573 119 VGTPGRVFDMLRR--QSL------RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRK 189 (369)
Q Consensus 119 v~t~~~l~~~~~~--~~~------~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~~~ 189 (369)
|+|++.++..... .+. .+. -+.+|+||+|.+.... ...+..++.... -+.++++||||+++.....+..
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 9999999876532 111 112 2689999999875333 334444444322 2567899999999776553322
Q ss_pred h-----------cC---CCEEEEec--Ccc-c----------------------------cccceeEEEEEccchh----
Q 017573 190 F-----------MN---KPVRILVK--RDE-L----------------------------TLEGIKQFYVNVEKEE---- 220 (369)
Q Consensus 190 ~-----------~~---~~~~~~~~--~~~-~----------------------------~~~~~~~~~~~~~~~~---- 220 (369)
. .+ .+..+... .+. . .+..-.-....++...
T Consensus 645 Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~ 724 (1110)
T TIGR02562 645 AYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENE 724 (1110)
T ss_pred HHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchh
Confidence 2 12 11111110 000 0 0000001111121110
Q ss_pred h--------hHHHHHHHHHhc----c-CC-C---eEEEeCCHhhHHHHHHHHhhC------CCeeEEecCCCCHHHHHHH
Q 017573 221 W--------KLETLCDLYETL----A-IT-Q---SVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDII 277 (369)
Q Consensus 221 ~--------~~~~l~~~~~~~----~-~~-k---~lv~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~r~~~ 277 (369)
. ..+.+..+.+.+ + .+ + .+|-+++++.+-.+++.|... .+.+..||+......|..+
T Consensus 725 ~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~ 804 (1110)
T TIGR02562 725 STYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYI 804 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHH
Confidence 0 112223333332 1 12 2 388888888888888877655 2358889999887777666
Q ss_pred HHHH----------------------hc----CCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCC
Q 017573 278 MREF----------------------RS----GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331 (369)
Q Consensus 278 ~~~f----------------------~~----~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 331 (369)
.+.. .+ +...|+|+|++++.|+|+ +.+.+|.- +.+...++|++||+.|.+.
T Consensus 805 E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 805 ERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccccccc
Confidence 6553 12 356799999999999998 56666533 4557899999999999764
Q ss_pred c
Q 017573 332 K 332 (369)
Q Consensus 332 ~ 332 (369)
.
T Consensus 882 ~ 882 (1110)
T TIGR02562 882 E 882 (1110)
T ss_pred C
Confidence 3
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.65 E-value=4.1e-14 Score=139.88 Aligned_cols=322 Identities=21% Similarity=0.225 Sum_probs=207.3
Q ss_pred CCCcHhhhhhhhcccc-----CCcEEEEcCCCChhhHHHHHHHHHhhhccCC-CccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 17 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~-----~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~-~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
..++++|.+.++.+.. +.+.++..++|.|||+..+..+......... .++.+++||. +++.+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 5789999999977652 5788899999999998887776653333332 3489999998 6778899999888765
Q ss_pred cCcEEEEEECCcc-----hHHHHHHHcc----CCcEEEeccHHHHHHH-HcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 91 LGVKVHACVGGTS-----VREDQRILQA----GVHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 91 ~~~~v~~~~~~~~-----~~~~~~~~~~----~~~iiv~t~~~l~~~~-~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
... +...+|... .......... ..+++++|++.+.... ....+....++.+|+||+|.+.+... ....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s-~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQS-SEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhh-HHHH
Confidence 543 555666553 1222222222 2789999999997632 22334445589999999999765441 1122
Q ss_pred HHHhhCCccCcEEEEEeeCChhHH-H---HHH----------------HhcCCCEE------------------------
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEAL-E---ITR----------------KFMNKPVR------------------------ 196 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~-~---~~~----------------~~~~~~~~------------------------ 196 (369)
.+ ..+.... .+.+|+||-.+.. + +.. .++..+..
T Consensus 494 ~l-~~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 AL-QFLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HH-HHHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 22 2332222 3556666621100 0 000 00000000
Q ss_pred -------EE--ec----------------C----------c----------cc-ccc---------------------ce
Q 017573 197 -------IL--VK----------------R----------D----------EL-TLE---------------------GI 209 (369)
Q Consensus 197 -------~~--~~----------------~----------~----------~~-~~~---------------------~~ 209 (369)
.. +. . . .. ... .+
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 00 00 0 0 00 000 00
Q ss_pred eEEEEEcc----------------------------chh-hhHHHHHHHH-Hh--ccCC--CeEEEeCCHhhHHHHHHHH
Q 017573 210 KQFYVNVE----------------------------KEE-WKLETLCDLY-ET--LAIT--QSVIFVNTRRKVDWLTDKM 255 (369)
Q Consensus 210 ~~~~~~~~----------------------------~~~-~~~~~l~~~~-~~--~~~~--k~lv~~~~~~~~~~~~~~l 255 (369)
........ ... .+...+.+++ .. ..+. ++++|++.......+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 00000000 000 3455565666 22 2334 8999999999999999999
Q ss_pred hhCCCeeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCce
Q 017573 256 RSRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 333 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~ 333 (369)
...+.....++|.++.+.|...++.|.++ ...+++++.+.+.|+|+..+++||++++.|++....|+..|+.|.|++.
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99988899999999999999999999986 3345667779999999999999999999999999999999999999876
Q ss_pred eEEEE--ecccc
Q 017573 334 VAINF--VTRDD 343 (369)
Q Consensus 334 ~~~~~--~~~~~ 343 (369)
.+.++ ...+.
T Consensus 812 ~v~v~r~i~~~t 823 (866)
T COG0553 812 PVKVYRLITRGT 823 (866)
T ss_pred eeEEEEeecCCc
Confidence 55444 44444
No 161
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.64 E-value=7.6e-16 Score=105.33 Aligned_cols=81 Identities=41% Similarity=0.749 Sum_probs=76.6
Q ss_pred HHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC
Q 017573 250 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
.+.+.|+..+..+..+||++++++|.++++.|.++...++++|+++++|+|+|.+++|++++++++...+.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 017573 330 G 330 (369)
Q Consensus 330 ~ 330 (369)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.64 E-value=9.5e-13 Score=114.78 Aligned_cols=292 Identities=15% Similarity=0.209 Sum_probs=203.1
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHHhcccc-------------CcE-------EEEEECCcchHHHHHHHc-------
Q 017573 60 YGLVQCQALVLAPTRELAQQIEKVMRALGDYL-------------GVK-------VHACVGGTSVREDQRILQ------- 112 (369)
Q Consensus 60 ~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~-------------~~~-------v~~~~~~~~~~~~~~~~~------- 112 (369)
+|-..+++||++|++..+.++.+.+.++.... ++. .........+.+....+.
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 45556799999999999999998887765441 100 000001122223332221
Q ss_pred -----------------cCCcEEEeccHHHHHHHHc------CCCCCCCccEEEEechhHhhc--cCcHHHHHHHHhhCC
Q 017573 113 -----------------AGVHVVVGTPGRVFDMLRR------QSLRPDYIKMFVLDEADEMLS--RGFKDQIYDIFQLLP 167 (369)
Q Consensus 113 -----------------~~~~iiv~t~~~l~~~~~~------~~~~~~~~~~viiDE~H~~~~--~~~~~~~~~~~~~~~ 167 (369)
..+||||+||=.|...+.. ..-.++.+.++|+|.+|.+.- |.....+...++..|
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P 192 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQP 192 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCC
Confidence 2479999999999877764 223356688999999998874 433444444455544
Q ss_pred cc---------------------CcEEEEEeeCChhHHHHHHHhcCCC---EEEEecCc-----cccccceeEEEEEccc
Q 017573 168 AK---------------------VQVGVFSATMPPEALEITRKFMNKP---VRILVKRD-----ELTLEGIKQFYVNVEK 218 (369)
Q Consensus 168 ~~---------------------~~~i~~saT~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~ 218 (369)
.. .|.+++|+...++...+....+.+. +.+..... ......+.+.+...+.
T Consensus 193 ~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~ 272 (442)
T PF06862_consen 193 KKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDC 272 (442)
T ss_pred CCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecC
Confidence 32 6999999999999888888866543 22222222 2334566777776543
Q ss_pred hhh------hHH-----HHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 017573 219 EEW------KLE-----TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 287 (369)
Q Consensus 219 ~~~------~~~-----~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 287 (369)
... ..+ .+-.+......+++|||++|.-+--.+.++|++.+...+.++...+..+..++-..|.+|+.+
T Consensus 273 ~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~ 352 (442)
T PF06862_consen 273 SSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP 352 (442)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce
Confidence 221 111 122222234457999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC--cCCCCCCCCcEEEEecCCCCccchhhhhcccccCC------CceeEEEEeccccHHHHHHHH
Q 017573 288 VLITTDLL--ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG------RKGVAINFVTRDDERMLFDIQ 351 (369)
Q Consensus 288 vli~t~~~--~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~------~~~~~~~~~~~~~~~~~~~~~ 351 (369)
+|+.|.-+ -.-..+.++++||++++|..+.-|...+.-..... ....|.++++.-|.-.++.+.
T Consensus 353 iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 353 ILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99999843 34467889999999999999988877775554433 257899999998888777664
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.63 E-value=2.3e-15 Score=129.83 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=90.2
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCC--ccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 109 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~--~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 109 (369)
..+++++..++|+|||..++..+.......... .++|||||. ++..+|.+++.++......++....+.........
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccccc
Confidence 347899999999999988766655333332221 259999999 88899999999998655667777776662222222
Q ss_pred HHccCCcEEEeccHHHH--------HHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCCh
Q 017573 110 ILQAGVHVVVGTPGRVF--------DMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 181 (369)
Q Consensus 110 ~~~~~~~iiv~t~~~l~--------~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 181 (369)
......+++++|++.+. ..+.. .++++||+||+|.+.+.. ......+..+. ....+++||||-.
T Consensus 103 ~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 103 NQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp SSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccceeeecccccccccccccccccccc-----ccceeEEEeccccccccc--ccccccccccc-cceEEeecccccc
Confidence 22356899999999998 22222 338999999999985433 33444444455 5567889999965
Q ss_pred h
Q 017573 182 E 182 (369)
Q Consensus 182 ~ 182 (369)
+
T Consensus 175 n 175 (299)
T PF00176_consen 175 N 175 (299)
T ss_dssp S
T ss_pred c
Confidence 4
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.59 E-value=6e-15 Score=106.95 Aligned_cols=136 Identities=21% Similarity=0.231 Sum_probs=81.3
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHH-hhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQ-QLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~-~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
+|+-.++-..+|+|||.-.+.-++. .+.++. ++|++.|++.+++++.+.++.. ++.+ ...... . .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~---rvLvL~PTRvva~em~~aL~~~----~~~~--~t~~~~-~----~ 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRL---RVLVLAPTRVVAEEMYEALKGL----PVRF--HTNARM-R----T 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT-----EEEEESSHHHHHHHHHHTTTS----SEEE--ESTTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccC---eEEEecccHHHHHHHHHHHhcC----Cccc--Cceeee-c----c
Confidence 4566789999999999866655444 344444 8999999999999888877643 3222 211111 1 1
Q ss_pred HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEEEEeeCChhH
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEA 183 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~ 183 (369)
..++.-|-++|+..+.+.+.+ .....+++++|+||||.....+ ......+..... ....+++|||||+...
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s-IA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS-IAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH-HHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH-HhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 235567899999998887766 5566789999999999743222 222222222221 2356999999998643
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.53 E-value=3.2e-13 Score=124.71 Aligned_cols=316 Identities=21% Similarity=0.246 Sum_probs=196.5
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.++|+=.|.+-.+.-..+-+..+-||-|||+++.+++.-....+. .+.+|+..--|+..-.+++.....++|+.+..
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 355555667767777888999999999999998877664444333 79999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEechhHhhc----------c------C
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEMLS----------R------G 154 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~----------~------~ 154 (369)
...+....+.+... .+||..+|...| +..++.+- .....+.+.|+||++.+.= . .
T Consensus 155 ~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 155 ILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred ccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 88888766665544 378999998877 23332221 1122367899999987541 1 0
Q ss_pred cHHHHHHHHhhCCc--------c---------------------------------------------------------
Q 017573 155 FKDQIYDIFQLLPA--------K--------------------------------------------------------- 169 (369)
Q Consensus 155 ~~~~~~~~~~~~~~--------~--------------------------------------------------------- 169 (369)
.+..+..+...+.. .
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 12222222211110 0
Q ss_pred ----------------------------------------------------CcEEEEEeeCChhHHHHHHHhcCCCEEE
Q 017573 170 ----------------------------------------------------VQVGVFSATMPPEALEITRKFMNKPVRI 197 (369)
Q Consensus 170 ----------------------------------------------------~~~i~~saT~~~~~~~~~~~~~~~~~~~ 197 (369)
....+||+|......++..-+...-+.+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 2233444444333222222222211111
Q ss_pred EecCccccccceeEEEEEccchhhhHHHH-HHHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 017573 198 LVKRDELTLEGIKQFYVNVEKEEWKLETL-CDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 275 (369)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
.........+.-...| .....+...+ .++...+ .++++||-+.+++..+.+.+.|.+.+.+..++++.....+-+
T Consensus 393 PTnrp~~R~D~~D~vy---~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 393 PTNRPIIRLDEPDLVY---KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred cCCCcccCCCCccccc---cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 1111111111111111 1222244333 3343333 457999999999999999999999999999999987655554
Q ss_pred HHHHHHhcCCCcEEEEecCCcCCCCCCCCc-----------EEEEecCCCCccchhhhhcccccCCCceeEEEEecccc
Q 017573 276 IIMREFRSGSSRVLITTDLLARGIDVQQVS-----------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~-----------~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
.+-+.-..| -|-|+|+++++|-|+.--. +||-.....|-.-=.|.-||+||.|-+|.+-.|.+-.|
T Consensus 470 Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 444333332 3889999999999985222 12222233333344699999999998898887777554
No 166
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.48 E-value=7.9e-13 Score=118.92 Aligned_cols=111 Identities=17% Similarity=0.284 Sum_probs=91.6
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhC------------------CCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEecC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSR------------------DHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDL 294 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~ 294 (369)
.++|+|..+......+.+.|.++ +.....+.|..+..+|++.+++|++.. +-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 36799999988888888888765 123446677788999999999998743 347788999
Q ss_pred CcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 017573 295 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 295 ~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
..-|+|+-+.+.+++++..|++..-.|++.|+.|.|+...|++|----|...
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~l 851 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSL 851 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhh
Confidence 9999999999999999999999999999999999999999988866444433
No 167
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.43 E-value=1.5e-10 Score=109.75 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCC--Cce--------eEEEEeccccHHHHHHHHHHh
Q 017573 285 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG--RKG--------VAINFVTRDDERMLFDIQKFY 354 (369)
Q Consensus 285 ~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~--~~~--------~~~~~~~~~~~~~~~~~~~~~ 354 (369)
..+++++.+++.+|||.|.+-.++.+....|...-.|.+||+.|.. +.| ..-++.+.+.......+++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5679999999999999999999999998899999999999999952 222 234455566677777777666
Q ss_pred ccc
Q 017573 355 NVV 357 (369)
Q Consensus 355 ~~~ 357 (369)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 543
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.39 E-value=7.3e-12 Score=105.89 Aligned_cols=73 Identities=23% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCCCCCcHhhhhhhh----ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC---CccEEEEcCCHHHHHHHHHHHHH
Q 017573 14 YGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~----~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
|+|. |||.|.+... .+.+++++++.+|||+|||++++.+++..+..... +.+++|.+++.++.+|...++++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 7884 6999999554 45568999999999999999999998866544322 23899999999998888777765
Q ss_pred h
Q 017573 87 L 87 (369)
Q Consensus 87 ~ 87 (369)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.39 E-value=7.3e-12 Score=105.89 Aligned_cols=73 Identities=23% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCCCCCcHhhhhhhh----ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC---CccEEEEcCCHHHHHHHHHHHHH
Q 017573 14 YGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~----~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
|+|. |||.|.+... .+.+++++++.+|||+|||++++.+++..+..... +.+++|.+++.++.+|...++++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 7884 6999999554 45568999999999999999999998866544322 23899999999998888777765
Q ss_pred h
Q 017573 87 L 87 (369)
Q Consensus 87 ~ 87 (369)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=4.6e-10 Score=97.46 Aligned_cols=336 Identities=17% Similarity=0.229 Sum_probs=206.9
Q ss_pred CCCCCcHhhhhhhhccccCCcEEEEc-CCCChh--hHHHHHHHHHhh----------------------------hccCC
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDVIQQA-QSGTGK--TATFCSGILQQL----------------------------DYGLV 63 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~li~~-~tG~GK--T~~~~~~~~~~~----------------------------~~~~~ 63 (369)
+-..+++.|.+++..+.+.++++.-. ..+.|+ +.++++.+++++ .++..
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 44679999999999999988876433 333444 456667777665 12233
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccCc-EEEE--------EECC---------cchHHHHHHH--------------
Q 017573 64 QCQALVLAPTRELAQQIEKVMRALGDYLGV-KVHA--------CVGG---------TSVREDQRIL-------------- 111 (369)
Q Consensus 64 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~-~v~~--------~~~~---------~~~~~~~~~~-------------- 111 (369)
.+++|||||+++-|-...+.+..+.....- +..+ -.++ ..+......+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 458999999999999888888776322211 1000 0010 1111111111
Q ss_pred ----------ccCCcEEEeccHHHHHHHHcCCCC------CCCccEEEEechhHhhccCcHHHHHHHH---hhCCcc---
Q 017573 112 ----------QAGVHVVVGTPGRVFDMLRRQSLR------PDYIKMFVLDEADEMLSRGFKDQIYDIF---QLLPAK--- 169 (369)
Q Consensus 112 ----------~~~~~iiv~t~~~l~~~~~~~~~~------~~~~~~viiDE~H~~~~~~~~~~~~~~~---~~~~~~--- 169 (369)
....||+||+|=.|...+...+-. ++.+.++|+|.+|.+...+|.. +..++ ..+|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccC
Confidence 125799999999987777643322 3447799999999988666442 33333 333332
Q ss_pred ------------------CcEEEEEeeCChhHHHHHHHhcCCCE-EEEec---Cc-cc--cccceeEEEEEccc------
Q 017573 170 ------------------VQVGVFSATMPPEALEITRKFMNKPV-RILVK---RD-EL--TLEGIKQFYVNVEK------ 218 (369)
Q Consensus 170 ------------------~~~i~~saT~~~~~~~~~~~~~~~~~-~~~~~---~~-~~--~~~~~~~~~~~~~~------ 218 (369)
.|.+++|+--.+....++...|.+.. .+... .. .. ....+.+.+.....
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 34555555555555555555554321 11110 00 00 01111122111111
Q ss_pred hhhhHH-HHHHHHHh---ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC
Q 017573 219 EEWKLE-TLCDLYET---LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 294 (369)
Q Consensus 219 ~~~~~~-~l~~~~~~---~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 294 (369)
.+.... .+..++-. .....+|||.|+.-+--.+..++++.......++...+.+.-.++-+.|-.|...||+.|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 111111 12222211 12347899999999999999999999888888888888888888999999999999999984
Q ss_pred C--cCCCCCCCCcEEEEecCCCCccch---hhhhcccccCC----CceeEEEEeccccHHHHHHHH
Q 017573 295 L--ARGIDVQQVSLVINYDLPTQPENY---LHRIGRSGRFG----RKGVAINFVTRDDERMLFDIQ 351 (369)
Q Consensus 295 ~--~~G~d~~~~~~vi~~~~~~~~~~~---~Q~~GR~~R~~----~~~~~~~~~~~~~~~~~~~~~ 351 (369)
+ -.-.++.+++.||++.+|.++.-| +.+.+|..-.| ..-.|.++++.-|.-.+..+.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 3 345789999999999999987544 66666664443 336788888887776666554
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.24 E-value=2.2e-10 Score=94.20 Aligned_cols=130 Identities=23% Similarity=0.301 Sum_probs=95.0
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
.|+ .|++.|.-+.-.+.+|+ +++..||-|||+++.++++-....+. .+-|++.+.-|+..=.+++..++..+|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 444 78888888887665544 99999999999998777665555554 8999999999999999999999999999
Q ss_pred EEEEEECCcchHHHHHHHccCCcEEEeccHHHHH-HHHcCCC------CCCCccEEEEechhHhh
Q 017573 94 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSL------RPDYIKMFVLDEADEML 151 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~-~~~~~~~------~~~~~~~viiDE~H~~~ 151 (369)
.+....++........... ++|+++|...|.- .++.... ....++++|+||+|.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999887655444333 5799999988853 4433211 13457899999999875
No 172
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.24 E-value=2.6e-08 Score=89.58 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhc---cCCCeEEEeCCHhhHHHHHHHHhhCCC-------eeEEecCCCCHHHHHHHHHHHhc----CCCc
Q 017573 222 KLETLCDLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDH-------TVSATHGDMDQNTRDIIMREFRS----GSSR 287 (369)
Q Consensus 222 ~~~~l~~~~~~~---~~~k~lv~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~ 287 (369)
.++.+...+... -++.+++|+||.+....+.+...+.|. +-.++-..-+ -+.+++.|.. |.-.
T Consensus 613 ~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Ga 689 (821)
T KOG1133|consen 613 MIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGA 689 (821)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCe
Confidence 445555444432 227899999999999999988886532 3333333323 3446666643 4445
Q ss_pred EEEEe--cCCcCCCCCCC--CcEEEEecCCCC--------------------c------------cchhhhhcccccCCC
Q 017573 288 VLITT--DLLARGIDVQQ--VSLVINYDLPTQ--------------------P------------ENYLHRIGRSGRFGR 331 (369)
Q Consensus 288 vli~t--~~~~~G~d~~~--~~~vi~~~~~~~--------------------~------------~~~~Q~~GR~~R~~~ 331 (369)
+|+++ .-+++|+|+.+ ++.|+.++.|+. + ....|.+|||.|-.+
T Consensus 690 iLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~ 769 (821)
T KOG1133|consen 690 ILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRK 769 (821)
T ss_pred EEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 66664 48899999986 888888887742 0 124799999999877
Q ss_pred ceeEEEEeccc
Q 017573 332 KGVAINFVTRD 342 (369)
Q Consensus 332 ~~~~~~~~~~~ 342 (369)
+-.++++++..
T Consensus 770 DYA~i~LlD~R 780 (821)
T KOG1133|consen 770 DYASIYLLDKR 780 (821)
T ss_pred cceeEEEehhh
Confidence 76666666643
No 173
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.16 E-value=5.3e-11 Score=110.16 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=87.8
Q ss_pred CeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCC-CcEE-EEecCCcCCCCCCCCcEEEEecCCC
Q 017573 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SRVL-ITTDLLARGIDVQQVSLVINYDLPT 314 (369)
Q Consensus 237 k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~ 314 (369)
++++|+.....+.-+...|...+.....+.|.++...|.+.+..|..+. ..++ ++..+.+.|+|+..+++|+..++-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8888888888888888888888888999999999999999999998543 3444 5667999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEE
Q 017573 315 QPENYLHRIGRSGRFGRKGVAIN 337 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~ 337 (369)
|+..-.|++-|+.|-|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998765554
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.15 E-value=2.8e-09 Score=97.87 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccC--CCce-----------eEEEEeccccHHHHHHH
Q 017573 284 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF--GRKG-----------VAINFVTRDDERMLFDI 350 (369)
Q Consensus 284 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~--~~~~-----------~~~~~~~~~~~~~~~~~ 350 (369)
...+++++..++-+|||-|++=.++-+....|..+=.|.+||+.|. ++.| ...+++...+......+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999994 2333 23345555666666555
Q ss_pred HHHh
Q 017573 351 QKFY 354 (369)
Q Consensus 351 ~~~~ 354 (369)
++-.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5433
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.07 E-value=1.1e-09 Score=90.35 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=107.5
Q ss_pred CCcHhhhhhhhccc----------cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 18 KPSAIQQRGIVPFC----------KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~----------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.++..|.+++-... ....+++-..||.||-......|++....+++ +.++++.+..|..+..++++..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECChhhhhHHHHHHHHh
Confidence 57888888885543 23678999999999998888888888877764 7999999999999999999987
Q ss_pred ccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCC-----------C-ccEEEEechhHhhccCc
Q 017573 88 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD-----------Y-IKMFVLDEADEMLSRGF 155 (369)
Q Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~-----------~-~~~viiDE~H~~~~~~~ 155 (369)
... .+.+..+..-... ....-+..|+++||..|........-..+ . =.+||+||||...+...
T Consensus 115 G~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 544 3333333321110 00122457999999998765432111111 1 25999999999875432
Q ss_pred --------HHHHHHHHhhCCccCcEEEEEeeCChhH
Q 017573 156 --------KDQIYDIFQLLPAKVQVGVFSATMPPEA 183 (369)
Q Consensus 156 --------~~~~~~~~~~~~~~~~~i~~saT~~~~~ 183 (369)
......+.+.+| +.+++++|||...+.
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCCC
Confidence 123444555565 566999999986544
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.95 E-value=1e-09 Score=102.66 Aligned_cols=259 Identities=18% Similarity=0.159 Sum_probs=159.2
Q ss_pred CCcHhhhhhhhcccc-CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEE
Q 017573 18 KPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 96 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~ 96 (369)
...|.|.+.+..+.. ..++++-+|||+|||.++.+++...+..-+. .++++++|.++|+....+++.+.....|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 455678888766665 4789999999999999999888877765544 59999999999999998888776555588898
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEechhHhhccCcHHHHH-------HHHhhCC
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR--PDYIKMFVLDEADEMLSRGFKDQIY-------DIFQLLP 167 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~--~~~~~~viiDE~H~~~~~~~~~~~~-------~~~~~~~ 167 (369)
.++|+...+.. --.+++++|+||+++....+.|... ...++.+++||.|.+... ....+. .+-...+
T Consensus 1006 e~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~ 1081 (1230)
T KOG0952|consen 1006 ELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTE 1081 (1230)
T ss_pred eccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccC
Confidence 88888775522 1245799999999998877765543 455788999999976533 111111 1122233
Q ss_pred ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEE------EEccchh-hhHHHHHHHHHhccCCCeEE
Q 017573 168 AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY------VNVEKEE-WKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 168 ~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~l~~~~~~~~~~k~lv 240 (369)
+..+.+++|-- ..+..++..++--++. +.. +....+......+ ..++... ........+-...+.++++|
T Consensus 1082 ~~vr~~glsta-~~na~dla~wl~~~~~-~nf-~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~li 1158 (1230)
T KOG0952|consen 1082 EPVRYLGLSTA-LANANDLADWLNIKDM-YNF-RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLI 1158 (1230)
T ss_pred cchhhhhHhhh-hhccHHHHHHhCCCCc-CCC-CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEE
Confidence 34555554433 3344455544443332 111 1111111111111 1122222 23344455555567789999
Q ss_pred EeCCHhh----HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 017573 241 FVNTRRK----VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 286 (369)
Q Consensus 241 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 286 (369)
|+.++.. +..+...+........+++.+ ..+-+.++..-.+...
T Consensus 1159 fv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1159 FVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNL 1206 (1230)
T ss_pred EeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccch
Confidence 9998765 444444444444455555544 5666666666665443
No 177
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.95 E-value=3.4e-08 Score=87.53 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=71.4
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH-----hcc-------ccCcEEEEEECCcch
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-----LGD-------YLGVKVHACVGGTSV 104 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-----~~~-------~~~~~v~~~~~~~~~ 104 (369)
++.++||||||+++...|++...++.+ +.|+.|.....++.....+.. +.- ...+.+..+..-..
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse- 77 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE- 77 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc-
Confidence 356899999999999999999888876 688999988888877776632 110 00112211111111
Q ss_pred HHHHHHHccCCcEEEeccHHHHHHHHcCCCCC---CC---cc-EEEEechhHhhc
Q 017573 105 REDQRILQAGVHVVVGTPGRVFDMLRRQSLRP---DY---IK-MFVLDEADEMLS 152 (369)
Q Consensus 105 ~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~---~~---~~-~viiDE~H~~~~ 152 (369)
......|+++|.+.|+..+.+...+. .. .. +++-||+|++-.
T Consensus 78 ------hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 78 ------HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ------cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 24467899999999988776544332 21 12 678899999864
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.89 E-value=8.9e-09 Score=85.50 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCcHhhhhhhhccccCCc-EEEEcCCCChhhHHHHHHHHHhh-----hccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 18 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQL-----DYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~-~li~~~tG~GKT~~~~~~~~~~~-----~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
++++.|.+|+..++.... .+|+||+|+|||.+....+.... .....+.++|+++|+..-+.+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999999999988 99999999999976554444431 1233444899999999999999888877
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.86 E-value=1.2e-08 Score=79.15 Aligned_cols=111 Identities=21% Similarity=0.354 Sum_probs=76.5
Q ss_pred HHHhccCCCeEEEeCCHhhHHHHHHHHhhCCC--eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec--CCcCCCCCCC-
Q 017573 229 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ- 303 (369)
Q Consensus 229 ~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~--~~~~G~d~~~- 303 (369)
+++.. +++++||++|.+..+.+.+.++.... ...++.. +..++.++++.|..++-.||+++. .+.+|+|+|+
T Consensus 4 l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 4 LISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred HHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 34433 48999999999999999999987642 1222222 356788899999999889999998 9999999996
Q ss_pred -CcEEEEecCCCCc------------------------------cchhhhhcccccCCCceeEEEEeccc
Q 017573 304 -VSLVINYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 304 -~~~vi~~~~~~~~------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
++.||+.+.|... ....|++||+.|..++--++++.++.
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 7789998887421 12489999999998776666666654
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.85 E-value=7.5e-08 Score=86.32 Aligned_cols=85 Identities=22% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 9 RGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 9 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
+.+..+++..++.-|..|+.++++..-.+|++|+|+|||.+....+++.... .. .++|+++|+..-+.|+++.+.+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~-~~VLvcApSNiAVDqLaeKIh~t- 477 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HA-GPVLVCAPSNIAVDQLAEKIHKT- 477 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cC-CceEEEcccchhHHHHHHHHHhc-
Confidence 3566778899999999999999999999999999999998876666655544 22 38999999999999999988764
Q ss_pred cccCcEEEEEE
Q 017573 89 DYLGVKVHACV 99 (369)
Q Consensus 89 ~~~~~~v~~~~ 99 (369)
+++|..+.
T Consensus 478 ---gLKVvRl~ 485 (935)
T KOG1802|consen 478 ---GLKVVRLC 485 (935)
T ss_pred ---CceEeeee
Confidence 45554443
No 181
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.82 E-value=4.3e-08 Score=90.59 Aligned_cols=307 Identities=15% Similarity=0.186 Sum_probs=173.4
Q ss_pred hhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCc--cEEEEcCCHHHHHHHHHHHHH-----hccccCcEE
Q 017573 23 QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC--QALVLAPTRELAQQIEKVMRA-----LGDYLGVKV 95 (369)
Q Consensus 23 Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~--~~liv~P~~~l~~q~~~~~~~-----~~~~~~~~v 95 (369)
-..+++.+.+++-+++.+.||.|||......+++.+.....+. .+.+--|++..+.-..+++.. .+...+.++
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV 462 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc
Confidence 3455566667888999999999999998888888876554332 355556777666666665532 222223333
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhhCCccCcEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVGV 174 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~~~~~i~ 174 (369)
.....-.. .--.|.++|.+-+.+.+..... .+..+|+||.|+....+ +...+.+=+.......+.++
T Consensus 463 Rf~Sa~pr---------pyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 463 RFDSATPR---------PYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccccccc---------cccceeeeccchhhhhhhhccc---ccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 22221111 1125888999888887776433 35789999999864222 22211111111112333445
Q ss_pred EEeeCChhHH--------------------HHHHHhcCCCE-EEE----------ecCccccccc-eeE-EEEEc-----
Q 017573 175 FSATMPPEAL--------------------EITRKFMNKPV-RIL----------VKRDELTLEG-IKQ-FYVNV----- 216 (369)
Q Consensus 175 ~saT~~~~~~--------------------~~~~~~~~~~~-~~~----------~~~~~~~~~~-~~~-~~~~~----- 216 (369)
||||...+.. .+....+..+. .+. ...+...+.. ... .-...
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 5555432211 11111111110 000 0000000000 000 00000
Q ss_pred ----------cchhhhHHHHHHHHH----hccCCCeEEEeCCHhhHHHHHHHHhhC-------CCeeEEecCCCCHHHHH
Q 017573 217 ----------EKEEWKLETLCDLYE----TLAITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRD 275 (369)
Q Consensus 217 ----------~~~~~~~~~l~~~~~----~~~~~k~lv~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~r~ 275 (369)
.........+..++. ..-.+-+++|.+.....-.+...+... ...+...|+.....+..
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 000001222222222 223357889999998888888777644 34677788888877888
Q ss_pred HHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC------------------CCCccchhhhhcccccCCCceeEEE
Q 017573 276 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAIN 337 (369)
Q Consensus 276 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 337 (369)
++.+....|..+++++|.+.+..+.+.++..|++.+. -.+....+|+-||++|. ++|.|..
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 8888778888899999998888887766666654331 12556789999999997 7788887
Q ss_pred Eeccc
Q 017573 338 FVTRD 342 (369)
Q Consensus 338 ~~~~~ 342 (369)
+++..
T Consensus 770 lcs~a 774 (1282)
T KOG0921|consen 770 LCSRA 774 (1282)
T ss_pred ccHHH
Confidence 77654
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.80 E-value=3.5e-09 Score=83.60 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=74.2
Q ss_pred CCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 16 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
+...+..|..+++++.+.+.+++.+|.|+|||+.++..+++.+..+... +++++-|..+.. +++..+.....-+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~----~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAG----EDLGFLPGDLEEKM 76 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT--------SS--------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCc----cccccCCCCHHHHH
Confidence 3456789999999999889999999999999999999999888775544 788888876431 12211100000000
Q ss_pred E-----------EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHh
Q 017573 96 H-----------ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 164 (369)
Q Consensus 96 ~-----------~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~ 164 (369)
. .+.+... ..... ....|-+.+...+.. . .+. -.+||+|||+.+. ...+..++.
T Consensus 77 ~p~~~p~~d~l~~~~~~~~---~~~~~-~~~~Ie~~~~~~iRG----r--t~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKEK---LEELI-QNGKIEIEPLAFIRG----R--TFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -TTTHHHHHHHTTTS-TTC---HHHHH-HTTSEEEEEGGGGTT--------B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhChHh---HHHHh-hcCeEEEEehhhhcC----c--ccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 0 0001111 01111 223455555333221 1 111 2799999999863 567788889
Q ss_pred hCCccCcEEEEEee
Q 017573 165 LLPAKVQVGVFSAT 178 (369)
Q Consensus 165 ~~~~~~~~i~~saT 178 (369)
++..+++++++.-.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99888887775444
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.76 E-value=4.4e-08 Score=78.21 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=71.3
Q ss_pred CCcHhhhhhhhccccCC--cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 18 KPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
+|++-|++++..+..++ -.+++++.|+|||.+. ..+...+... +.++++++|+...+..+.+.. +.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREKT-------GIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------TS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------Ccch
Confidence 47899999999997543 4788899999999764 4455555443 238999999988777655542 1111
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC----CCCCccEEEEechhHhhccCcHHHHHHHHhhCCc-cC
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL----RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA-KV 170 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~----~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~ 170 (369)
.|..+++........ .....+++|+||+-++. ...+..++...+. ..
T Consensus 71 ------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 71 ------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGA 122 (196)
T ss_dssp ------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-
T ss_pred ------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCC
Confidence 121121111111000 03345899999999874 4556677777766 55
Q ss_pred cEEEEEee
Q 017573 171 QVGVFSAT 178 (369)
Q Consensus 171 ~~i~~saT 178 (369)
+++++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 56654444
No 184
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.68 E-value=7.3e-06 Score=71.95 Aligned_cols=75 Identities=13% Similarity=0.020 Sum_probs=49.9
Q ss_pred HhCCCCCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCC-ccEEEEcCCHHHHHHHHHHHHH
Q 017573 12 YAYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ-CQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~-~~~liv~P~~~l~~q~~~~~~~ 86 (369)
.-|++...+|-|-+-...+. .+.++++.+|+|+|||.+.+..+......-+.. .|.++-.-+..-++....+++.
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 34788899999987665544 368899999999999988776666554433322 2566655555444444444443
No 185
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.66 E-value=1.7e-06 Score=82.58 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=58.8
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCCh
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 181 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 181 (369)
...|+++||+.+..-+..+.+..+.+..+|+||||++........+.+++..-++..-+.++|+.|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 35799999999999888888999999999999999998776667777777777777889999999974
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.56 E-value=5.5e-07 Score=79.13 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=66.8
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 114 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 114 (369)
-++|.|.+|||||++++..+... .....+.++++++++.++...+.+.+.+... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 47999999999998876555544 2222333899999999999888777765320 001
Q ss_pred CcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-------cHHHHHHHHhh
Q 017573 115 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-------FKDQIYDIFQL 165 (369)
Q Consensus 115 ~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-------~~~~~~~~~~~ 165 (369)
....+..+..+.............+++||+||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233334444433333222344558999999999997631 23455555555
No 187
>PRK10536 hypothetical protein; Provisional
Probab=98.51 E-value=1.2e-06 Score=71.39 Aligned_cols=143 Identities=18% Similarity=0.135 Sum_probs=80.5
Q ss_pred CCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHH-----------HHHHHHH
Q 017573 16 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELA-----------QQIEKVM 84 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~-----------~q~~~~~ 84 (369)
+.-.+..|..++..+.++..+++.||+|+|||+.+...+++.+..+.. .++++.-|..+.. +.+.-++
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~-~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~ 135 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV-DRIIVTRPVLQADEDLGFLPGDIAEKFAPYF 135 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCe-eEEEEeCCCCCchhhhCcCCCCHHHHHHHHH
Confidence 344677899999988888899999999999999988888876644332 2556655554321 1111111
Q ss_pred HHhccccCcEEEEEECCcchHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHH
Q 017573 85 RALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 163 (369)
Q Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~ 163 (369)
.-+...+.. +.+. ......+. ....|-+.... +++-.. +. -++||+||++++. ...+..++
T Consensus 136 ~pi~D~L~~----~~~~---~~~~~~~~~~~~~Iei~~l~----ymRGrt--l~-~~~vIvDEaqn~~----~~~~k~~l 197 (262)
T PRK10536 136 RPVYDVLVR----RLGA---SFMQYCLRPEIGKVEIAPFA----YMRGRT--FE-NAVVILDEAQNVT----AAQMKMFL 197 (262)
T ss_pred HHHHHHHHH----HhCh---HHHHHHHHhccCcEEEecHH----HhcCCc--cc-CCEEEEechhcCC----HHHHHHHH
Confidence 111111100 0011 11111111 12234444422 222222 22 2799999999873 46777888
Q ss_pred hhCCccCcEEEEEee
Q 017573 164 QLLPAKVQVGVFSAT 178 (369)
Q Consensus 164 ~~~~~~~~~i~~saT 178 (369)
..++.+.++++ ++-
T Consensus 198 tR~g~~sk~v~-~GD 211 (262)
T PRK10536 198 TRLGENVTVIV-NGD 211 (262)
T ss_pred hhcCCCCEEEE-eCC
Confidence 88888887665 444
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.50 E-value=6.4e-07 Score=83.15 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhC-------CCeeEEecCCCCHHHHHHHHHHHhcC--------CCcEEEEecCCcCCCC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRSG--------SSRVLITTDLLARGID 300 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~--------~~~vli~t~~~~~G~d 300 (369)
...|+|+++....+++....+.. +.+-.++-.. +..+-.+++..|.+. ..-+.|+-...++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 35899999998777775555432 2222233222 455556667777542 1223455568899999
Q ss_pred CCC--CcEEEEecCCCC--------------------------------------ccchhhhhcccccCCCc-eeEEEEe
Q 017573 301 VQQ--VSLVINYDLPTQ--------------------------------------PENYLHRIGRSGRFGRK-GVAINFV 339 (369)
Q Consensus 301 ~~~--~~~vi~~~~~~~--------------------------------------~~~~~Q~~GR~~R~~~~-~~~~~~~ 339 (369)
+.+ .+.||..+.|.- ...+.|++||+.|-.++ |.++ ++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~-l~ 719 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVI-LC 719 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceee-Ee
Confidence 974 777888887631 12358999999998666 5555 54
Q ss_pred c
Q 017573 340 T 340 (369)
Q Consensus 340 ~ 340 (369)
+
T Consensus 720 D 720 (945)
T KOG1132|consen 720 D 720 (945)
T ss_pred e
Confidence 4
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=98.48 E-value=6.4e-07 Score=59.02 Aligned_cols=52 Identities=33% Similarity=0.391 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
+.-++|.+|+|+|||..++-.+.+.+.. ...+.++++++|++..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4556679999999998777676666642 112448999999999999888877
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.45 E-value=6e-07 Score=80.08 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=55.9
Q ss_pred CCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
..+.+-|++|+...... .-.+++||+|+|||.+....+...+.++. ++|+..|+..-+.+..+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHhc
Confidence 46888899999888877 45799999999999998888887777765 89999999998888888643
No 191
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.43 E-value=2.3e-06 Score=80.48 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
..+.+.|.+++..+... ...+|+||+|+|||.++...+.+.+..+. ++++++|+..-+.++.+.+.+
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999998876 67899999999999887666665555444 899999999988888888876
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.41 E-value=3.1e-06 Score=80.94 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=78.9
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEE
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 96 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~ 96 (369)
..+++-|++|+..+..++-+++.+++|+|||.++ ..++..+........+++++||-.-+..+.+.. +...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~~a- 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GLTA- 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CCcc-
Confidence 5899999999999998899999999999999764 444444443321136888899976665433321 1111
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-----CCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-----QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 171 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-----~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
.|.++++..... ........+++|+||++++.. ..+..+++.++...+
T Consensus 393 -----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 393 -----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHAR 445 (720)
T ss_pred -----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCE
Confidence 111111110000 000112368999999998743 345666677787888
Q ss_pred EEEEEee
Q 017573 172 VGVFSAT 178 (369)
Q Consensus 172 ~i~~saT 178 (369)
++++.-+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8876555
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.38 E-value=2.6e-06 Score=79.32 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=86.8
Q ss_pred CcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-CCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 19 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
..++|+.|+.....++-++|.+++|+|||.+....+....... ....++.+++||..-+..+.+.+.......+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 3589999999999999999999999999977533332222211 122368889999888887777665533222110
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHH------cCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR------RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 171 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~------~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
+.... ....-..|.++|+.... ....+.-.++++|+||+-++. ...+..+++.+++..+
T Consensus 230 -------~~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 -------DEQKK----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHAR 294 (615)
T ss_pred -------hhhhh----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCE
Confidence 00000 00112234444432211 111122336899999999763 4566677888888888
Q ss_pred EEEEEee
Q 017573 172 VGVFSAT 178 (369)
Q Consensus 172 ~i~~saT 178 (369)
+|++.-.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8887655
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.38 E-value=5e-06 Score=77.24 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=85.1
Q ss_pred cHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC--CCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 20 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL--VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~--~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.+.|+.++.....++-++|.|++|+|||.+....+........ ...++++.+||-.-+..+.+........++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 3799999999999999999999999999775332222211111 12379999999877777666665532221110
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHH------cCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR------RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 171 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~------~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
... .....+-..|.++|+.... ....+...++++|+||+-++. ...+..+++.+++..+
T Consensus 224 -------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 -------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTK 288 (586)
T ss_pred -------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCE
Confidence 000 0011122344444433211 111122347999999999763 3456677788888888
Q ss_pred EEEEEee
Q 017573 172 VGVFSAT 178 (369)
Q Consensus 172 ~i~~saT 178 (369)
+|++.-.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8875544
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.30 E-value=4.2e-06 Score=72.73 Aligned_cols=122 Identities=23% Similarity=0.143 Sum_probs=79.3
Q ss_pred CcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-CCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 19 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
+++-|.+++.. ..+.++|.|+.|||||.+++.-+...+..+ ....+++++++|+..+.++.+.+...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc--
Confidence 57889999988 889999999999999999887777777655 3444899999999999999998887543321100
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCC--CccEEEEechh
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD--YIKMFVLDEAD 148 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~--~~~~viiDE~H 148 (369)
...............+.|+|.+.|...+.+...... .-+.-++|+..
T Consensus 77 ----~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ----SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000011222223457899999988654433221111 12567777776
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.24 E-value=1.4e-05 Score=59.81 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHhcCC-CcEEEEecCCcCCCCCCC--CcEEEEecCCCC------------------------------
Q 017573 269 MDQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPTQ------------------------------ 315 (369)
Q Consensus 269 ~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~--~~~vi~~~~~~~------------------------------ 315 (369)
.+..+...+++.|.... ..||+++..+.+|+|+|+ ++.||+.+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44556788999998654 379999988999999996 678888886631
Q ss_pred -ccchhhhhcccccCCCceeEEEEecc
Q 017573 316 -PENYLHRIGRSGRFGRKGVAINFVTR 341 (369)
Q Consensus 316 -~~~~~Q~~GR~~R~~~~~~~~~~~~~ 341 (369)
...+.|.+||+.|..++--++++.++
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEec
Confidence 12348999999998766445555554
No 197
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.20 E-value=1.7e-05 Score=63.41 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=74.7
Q ss_pred CHHHHHHHHhCCCCCCcHhhhhhhhcccc---CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 4 QENLLRGIYAYGFEKPSAIQQRGIVPFCK---GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 4 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|+++.=.++ +-..+|+.|.+....+.+ +++.+.+.-+|.|||.+.+..+...+..+.. -+.+++|. +|.+|.
T Consensus 11 P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~--LvrviVpk-~Ll~q~ 85 (229)
T PF12340_consen 11 PDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSR--LVRVIVPK-ALLEQM 85 (229)
T ss_pred hHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCc--EEEEEcCH-HHHHHH
Confidence 444444443 335899999999999886 4789999999999998865444444444431 45666664 799999
Q ss_pred HHHHHHhcccc-CcEEEEE--ECCcchHH-----HHHH---HccCCcEEEeccHHHHHH
Q 017573 81 EKVMRALGDYL-GVKVHAC--VGGTSVRE-----DQRI---LQAGVHVVVGTPGRVFDM 128 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~--~~~~~~~~-----~~~~---~~~~~~iiv~t~~~l~~~ 128 (369)
...+....... +-.+..+ ..+..... .... ....-.|+++||+.+.+.
T Consensus 86 ~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 86 RQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 88887644322 3333222 22222111 1111 123457999999998554
No 198
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.19 E-value=1.5e-05 Score=59.75 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCC---cEEEEecC--CcCCCCCCC--CcEEEEecCCCC-----------------------------
Q 017573 272 NTRDIIMREFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPTQ----------------------------- 315 (369)
Q Consensus 272 ~~r~~~~~~f~~~~~---~vli~t~~--~~~G~d~~~--~~~vi~~~~~~~----------------------------- 315 (369)
.+..++++.|.+... .||+++.. +.+|+|+|+ ++.||+.+.|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 344678888876443 58998886 999999996 678988887631
Q ss_pred --ccchhhhhcccccCCCceeEEEEecc
Q 017573 316 --PENYLHRIGRSGRFGRKGVAINFVTR 341 (369)
Q Consensus 316 --~~~~~Q~~GR~~R~~~~~~~~~~~~~ 341 (369)
...+.|.+||+.|..++--++++.++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 02348999999999776556666554
No 199
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=98.19 E-value=7.3e-06 Score=79.18 Aligned_cols=148 Identities=17% Similarity=0.003 Sum_probs=94.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhcc---------------CCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYG---------------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~---------------~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
|+.+++...+|.|||...+...+....+. ...+.+|||||. ++..||.+++.+..... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 57789999999999988766555443111 011258999997 88899999999887664 55555
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCC--------------------ccEEEEechhHhhccCcHH
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY--------------------IKMFVLDEADEMLSRGFKD 157 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~--------------------~~~viiDE~H~~~~~~~~~ 157 (369)
..|=.+.........-++||++|||+.+...+.....+.+. |=-|++||++++.. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 44422211111122246999999999997655443211110 22689999998754 355
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHH
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALE 185 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~ 185 (369)
...++...++.. ..-++|+||-..+.+
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhh
Confidence 666666676643 356789998766444
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=9.5e-06 Score=60.48 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=55.8
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhcc--CCCccEEE-EcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVQCQALV-LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 108 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~li-v~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 108 (369)
+++.++|.||+|+|||..+-..+....... .....+++ -+|...-...+...+..........
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 356789999999999987644444332210 00113444 3443332344444443322111100
Q ss_pred HHHccCCcEEEecc----HHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 109 RILQAGVHVVVGTP----GRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 109 ~~~~~~~~iiv~t~----~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
-.+. +.+...+.+... .++|+||+|++. . ...+..+........-.+.+++++
T Consensus 69 ----------~~~~~~l~~~~~~~l~~~~~-----~~lviDe~~~l~--~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ----------RQTSDELRSLLIDALDRRRV-----VLLVIDEADHLF--S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ----------TS-HHHHHHHHHHHHHHCTE-----EEEEEETTHHHH--T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ----------cCCHHHHHHHHHHHHHhcCC-----eEEEEeChHhcC--C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 1112 233344444332 689999999974 1 445555555555544456678876
No 201
>PRK06526 transposase; Provisional
Probab=98.12 E-value=2.9e-05 Score=64.44 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=27.6
Q ss_pred hccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 28 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 28 ~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
+.+..++++++.||+|+|||..+..........+. +++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~---~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGH---RVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCC---chhhh
Confidence 33445689999999999999877655555544433 55553
No 202
>PRK04296 thymidine kinase; Provisional
Probab=98.09 E-value=1.8e-05 Score=62.99 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=57.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 114 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 114 (369)
-.++.+|+|+|||..++..+......+. +++++-|...-. ..........++.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~---~v~i~k~~~d~~----~~~~~i~~~lg~~~~------------------ 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGM---KVLVFKPAIDDR----YGEGKVVSRIGLSRE------------------ 58 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCC---eEEEEecccccc----ccCCcEecCCCCccc------------------
Confidence 4688999999999877666555544433 788876631100 000011111111110
Q ss_pred CcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 115 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 115 ~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
.+.+...+.+...+.. ....+++||+||+|.+.. +.+..+.+.+.+....+.+|+-.
T Consensus 59 -~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 -AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred -ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEecC
Confidence 1223444555555444 234579999999986522 33444555533333344455543
No 203
>PRK08181 transposase; Validated
Probab=98.08 E-value=6.2e-05 Score=62.89 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=71.0
Q ss_pred HHHHhCCCCC---CcHhhhhhhh----ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH
Q 017573 9 RGIYAYGFEK---PSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 81 (369)
Q Consensus 9 ~~l~~~~~~~---~~~~Q~~~~~----~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 81 (369)
+.++.|.+.. +...|..++. .+.+++++++.||+|+|||..+.....+....+. +++++. ...|..+..
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~---~v~f~~-~~~L~~~l~ 150 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGW---RVLFTR-TTDLVQKLQ 150 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCC---ceeeee-HHHHHHHHH
Confidence 4455555433 3456666663 3346789999999999999776555544444432 565543 334444332
Q ss_pred HHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHH
Q 017573 82 KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIY 160 (369)
Q Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~ 160 (369)
.... + .+.+.+...+. ..+++|+||.+...... ....+.
T Consensus 151 ~a~~------------------------------~---~~~~~~l~~l~-------~~dLLIIDDlg~~~~~~~~~~~Lf 190 (269)
T PRK08181 151 VARR------------------------------E---LQLESAIAKLD-------KFDLLILDDLAYVTKDQAETSVLF 190 (269)
T ss_pred HHHh------------------------------C---CcHHHHHHHHh-------cCCEEEEeccccccCCHHHHHHHH
Confidence 1100 0 12222223222 26899999999764322 234556
Q ss_pred HHHhhCCccCcEEEEEeeCChhH
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEA 183 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~ 183 (369)
.+++.......+++.|-.++..+
T Consensus 191 ~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 191 ELISARYERRSILITANQPFGEW 213 (269)
T ss_pred HHHHHHHhCCCEEEEcCCCHHHH
Confidence 66655433445665555444333
No 204
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.06 E-value=4.4e-07 Score=83.75 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEecCCcCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG---SSRVLITTDLLARG 298 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vli~t~~~~~G 298 (369)
+.++++|..-.+..+-+...+.-.+ ....+.|......|...++.|+.. ...+|++|.+.+.|
T Consensus 631 ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 631 GHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3488888888888888888887777 888999999999999999999842 45688899887655
No 205
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.01 E-value=0.00011 Score=70.68 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
..+++-|++++..+..+ +-+++.+++|+|||.++ -.+...+... +.+++.++|+..-+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHH
Confidence 47899999999998874 66899999999999764 3444444432 23789999986655444
No 206
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.98 E-value=4.8e-05 Score=64.33 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=85.4
Q ss_pred hCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 13 AYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
.+|+..-...|.-|++.++.. +-+.+.++.|||||+.++.+.+++....+.-.++++-=|+..+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~------------ 290 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE------------ 290 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc------------
Confidence 467777778899999998876 568899999999999999988888765554447777667654432
Q ss_pred cCcEEEEEECCcchHHH--H-------HHHccCCcEEEeccHHHHHHHHcCCCCCCC----------ccEEEEechhHhh
Q 017573 91 LGVKVHACVGGTSVRED--Q-------RILQAGVHVVVGTPGRVFDMLRRQSLRPDY----------IKMFVLDEADEML 151 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~--~-------~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~----------~~~viiDE~H~~~ 151 (369)
.+..+-|....+.. - ..+....+ ++.+.+...+.+..+.... =.++|+|||+++.
T Consensus 291 ---dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 291 ---DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred ---ccCcCCCchhhhccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC
Confidence 11111111111100 0 00000000 1133344443333322111 1489999999873
Q ss_pred ccCcHHHHHHHHhhCCccCcEEEE
Q 017573 152 SRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
...+..++.+..+..+++++
T Consensus 365 ----pheikTiltR~G~GsKIVl~ 384 (436)
T COG1875 365 ----PHELKTILTRAGEGSKIVLT 384 (436)
T ss_pred ----HHHHHHHHHhccCCCEEEEc
Confidence 56778888899888887763
No 207
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.93 E-value=1.8e-05 Score=65.15 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 136 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 136 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
...+.++|+||||.+.... ...+.+.+...+...++++++.-+
T Consensus 127 ~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 3447999999999987655 455666666666677777766554
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.85 E-value=0.00022 Score=54.12 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
++.+++.||+|+|||..+. .+...+.. .+..++++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~-~i~~~~~~--~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR-AIANELFR--PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHhhc--CCCCeEEEehh
Confidence 5789999999999997643 33333321 12255555443
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00069 Score=59.70 Aligned_cols=123 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhcc-CCCccEEEEcCCH--HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTR--ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~liv~P~~--~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
+.+++.+|||+|||.++.-.+....... ..+.++.+++-.. .-+.. ++..+....++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe-------------
Confidence 5689999999999988755444332221 2233566665432 32222 244444444544422
Q ss_pred HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhhCCcc-CcEEEEEeeCChhHH
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAK-VQVGVFSATMPPEAL 184 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~~-~~~i~~saT~~~~~~ 184 (369)
+-+++.+...+.. ..++++|++|++.+..... ....+..++....+. ..++.+|||...+..
T Consensus 239 --------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 239 --------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred --------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 1133444443333 1347999999999865221 224455555554433 456779999875433
No 210
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.78 E-value=0.00026 Score=69.45 Aligned_cols=124 Identities=17% Similarity=0.073 Sum_probs=74.7
Q ss_pred CCCcHhhhhhhhccccCC-cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 17 EKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
..+++-|++++..+..++ -+++.++.|+|||++ +..+...+... +.+++.++|+-.-+..+.+. .++..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~-------tGi~a 414 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEGG-------SGIAS 414 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhhc-------cCcch
Confidence 479999999999999864 579999999999986 44455444432 33788999986555433221 12111
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC-CccCcEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGV 174 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~i~ 174 (369)
.|..+|..-...........+++|+||+-++... .+..++... +...++|+
T Consensus 415 ------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garvVL 466 (988)
T PRK13889 415 ------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKVVL 466 (988)
T ss_pred ------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEEEE
Confidence 1222222111122222344589999999987544 344455433 44666776
Q ss_pred EEee
Q 017573 175 FSAT 178 (369)
Q Consensus 175 ~saT 178 (369)
+.-+
T Consensus 467 VGD~ 470 (988)
T PRK13889 467 VGDP 470 (988)
T ss_pred ECCH
Confidence 5544
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.77 E-value=7.4e-05 Score=61.91 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCcEEEEecCCcCCCCCCC--------CcEEEEecCCCCccchhhhhcccccCCCc-eeEEEEeccc
Q 017573 275 DIIMREFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRD 342 (369)
Q Consensus 275 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~-~~~~~~~~~~ 342 (369)
....+.|.+|+..|+|.+.+.++|+.+.. -++.|.+.+||+....+|.+||+.|.|+. ...|.+...+
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 35677899999999999999999998752 34567899999999999999999999876 4555555543
No 212
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.76 E-value=0.00012 Score=69.37 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=77.4
Q ss_pred CCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 16 FEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
...++.-|++|+..++.. ...+|.|=+|+|||.+....+--.+..++ ++|+.+=|-+-+.+..-.++.+ ++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk---kVLLtsyThsAVDNILiKL~~~----~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK---KVLLTSYTHSAVDNILIKLKGF----GIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC---eEEEEehhhHHHHHHHHHHhcc----Ccc
Confidence 357889999999888766 45799999999999775544443344433 7887777766666666666554 222
Q ss_pred EEEEECCcchH-----------------HHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 95 VHACVGGTSVR-----------------EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 95 v~~~~~~~~~~-----------------~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
...+..+...- .....+-++..|+.+|--.+.+.+. ....||+.|+|||-.+.
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccccc
Confidence 22222221111 1112233456788887544443332 23448999999999865
No 213
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.73 E-value=0.00068 Score=67.11 Aligned_cols=124 Identities=19% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCCcHhhhhhhhcccc-CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 17 EKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
..+++-|.+++..+.. ++-.++.|+.|+|||.+. -.+...+... +.+++.++|+-.-+..+.+.. |+..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~--G~~V~g~ApTgkAA~~L~e~~-------Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA--GYRVVGGALAGKAAEGLEKEA-------GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEEcCcHHHHHHHHHhh-------CCCe
Confidence 4799999999998864 456899999999999764 4455444432 237889999866554443211 2222
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGV 174 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~ 174 (369)
. |..+|..........+..-+++|+||+.++.. ..+..++...+ ...++++
T Consensus 450 ~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~~~~~garvVL 501 (1102)
T PRK13826 450 R------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEAVTRAGAKLVL 501 (1102)
T ss_pred e------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEE
Confidence 1 11122111111112233347999999998743 34445555554 4566776
Q ss_pred EEee
Q 017573 175 FSAT 178 (369)
Q Consensus 175 ~saT 178 (369)
+.-+
T Consensus 502 VGD~ 505 (1102)
T PRK13826 502 VGDP 505 (1102)
T ss_pred ECCH
Confidence 5544
No 214
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.73 E-value=0.00034 Score=55.77 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=70.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 114 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 114 (369)
-+++.||||+|||.++.-.+.....+ +.++.+++.-.--+ --.++++.+....++.+..........
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~-ga~eQL~~~a~~l~vp~~~~~~~~~~~--------- 69 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRI-GAVEQLKTYAEILGVPFYVARTESDPA--------- 69 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSST-HHHHHHHHHHHHHTEEEEESSTTSCHH---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCc-cHHHHHHHHHHHhccccchhhcchhhH---------
Confidence 36899999999998876666555444 22676666432111 123344444444455553322111100
Q ss_pred CcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHh
Q 017573 115 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 190 (369)
Q Consensus 115 ~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~ 190 (369)
+.+.+.+.. ...+++++|++|-+.+.. +......+..+.....+....+.++||...+.......+
T Consensus 70 --------~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 70 --------EIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp --------HHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred --------HHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 111122221 111236899999886543 223345666666666666667779999876655444433
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.73 E-value=0.00089 Score=58.21 Aligned_cols=133 Identities=16% Similarity=0.190 Sum_probs=74.1
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
+++-+.+.||||.|||.+..-.+.......... ++-+|+--.= -.--.++++.++..+++++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-kVaiITtDtY-RIGA~EQLk~Ya~im~vp~---------------- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-KVAIITTDTY-RIGAVEQLKTYADIMGVPL---------------- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-ceEEEEeccc-hhhHHHHHHHHHHHhCCce----------------
Confidence 367889999999999988765555554222222 4555443211 1112345555555445544
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHh-hccCcHHHHHHHHhhCCccCcEEEEEeeCChh-HHHHHHH
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPE-ALEITRK 189 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~-~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~-~~~~~~~ 189 (369)
.++-++..|...+.. +.++|+|.+|=+-+- .+......+..+.+...+....+.+|||.... ..+....
T Consensus 264 -----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 -----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred -----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 344455555544433 223588999965543 34444455556665554555567789998653 3334444
Q ss_pred hc
Q 017573 190 FM 191 (369)
Q Consensus 190 ~~ 191 (369)
+.
T Consensus 335 f~ 336 (407)
T COG1419 335 FS 336 (407)
T ss_pred hc
Confidence 33
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.70 E-value=0.00015 Score=54.74 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
+..+++.+|+|+|||..+...+. .+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~-~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR-ELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh-ccCCCC--CCEEEECCEEcc
Confidence 46789999999999987644433 332221 247777776543
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=97.68 E-value=0.001 Score=57.46 Aligned_cols=131 Identities=22% Similarity=0.282 Sum_probs=71.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC---HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT---RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~---~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
.-+++.+++|+|||.+....+. .+... +.+++++... .+-..|+...... .++.+.....+....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~dp~----- 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKKN--GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGADPA----- 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHHc--CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCCHH-----
Confidence 4578999999999987544443 33322 2266666543 3344454443333 344442211111100
Q ss_pred HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHH
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRK 189 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~ 189 (369)
..+...+... ...+.++|++|.++++. +......+..+.....+...++.++||...+.......
T Consensus 209 ------------~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 209 ------------AVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred ------------HHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 0011211111 11236899999999875 33345666666666666676788899887665555544
Q ss_pred h
Q 017573 190 F 190 (369)
Q Consensus 190 ~ 190 (369)
+
T Consensus 275 f 275 (336)
T PRK14974 275 F 275 (336)
T ss_pred H
Confidence 4
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.001 Score=58.07 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=67.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC--H-HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT--R-ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~--~-~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
+.+.+.||+|+|||..+...+......+ .++.++..- + +-+.|+. .+....++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk----~yae~lgipv~-------------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVI-------------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHH----HHhhhcCCcEE--------------
Confidence 5689999999999987765555443332 256665542 2 2333333 33222233221
Q ss_pred HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHHHHHHHhhCCccCcEEEEEeeCChhH-HHHHH
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEA-LEITR 188 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~-~~~~~ 188 (369)
...++..+...+..-.. ..++++|++|-+-+... ......+..++....+...++.+|||..... .+...
T Consensus 301 -------v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 301 -------AVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred -------ecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 12345555544433111 12369999998866432 2223444555544444444566888866543 44444
Q ss_pred Hh
Q 017573 189 KF 190 (369)
Q Consensus 189 ~~ 190 (369)
.+
T Consensus 373 ~F 374 (436)
T PRK11889 373 NF 374 (436)
T ss_pred Hh
Confidence 43
No 219
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.60 E-value=0.0012 Score=56.94 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+.++++.||+|+|||..+...+...+..+. .++++. ...+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~---~V~y~t-~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGK---SVIYRT-ADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEE-HHHHHHH
Confidence 588999999999999876544444444332 565544 3444443
No 220
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.58 E-value=0.00035 Score=66.48 Aligned_cols=76 Identities=22% Similarity=0.174 Sum_probs=58.2
Q ss_pred HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC-CCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
....-..+++-|++++..- ..+++|.|+.|||||.++..-+...+..+. ...++++++.++..+..+.+.+.+...
T Consensus 190 ~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 190 SQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred HhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 3344457999999999643 367899999999999988776665554432 233899999999999999998876543
No 221
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.56 E-value=0.00018 Score=68.72 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
.+++-|++++.+ ..+.++|.|++|||||.+...-+...+.. +-...++|+++.|+.-+.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999976 35789999999999999988888777754 3334489999999999999999887754
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.55 E-value=0.0031 Score=48.77 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=25.0
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
+++.|++|+|||..+...+...... +..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcch
Confidence 6899999999998765544444332 2267777665443
No 223
>PRK05642 DNA replication initiation factor; Validated
Probab=97.52 E-value=0.00084 Score=55.36 Aligned_cols=43 Identities=16% Similarity=0.427 Sum_probs=28.7
Q ss_pred ccEEEEechhHhhcc-CcHHHHHHHHhhCCccCcEEEEEeeCCh
Q 017573 139 IKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATMPP 181 (369)
Q Consensus 139 ~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~~saT~~~ 181 (369)
.+++++|++|.+... .+...+..+++.+......+++|++.++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 589999999987543 3456677777766554445566666543
No 224
>PRK06921 hypothetical protein; Provisional
Probab=97.51 E-value=0.0023 Score=53.73 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
+.++++.|++|+|||..+... +..+.... +..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~ai-a~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAA-ANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHH-HHHHhhhc-CceEEEEEH
Confidence 578999999999999775433 43433221 225666553
No 225
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00049 Score=59.56 Aligned_cols=41 Identities=17% Similarity=-0.014 Sum_probs=32.2
Q ss_pred CCcHhhhhhhhccccCC----cEEEEcCCCChhhHHHHHHHHHhh
Q 017573 18 KPSAIQQRGIVPFCKGL----DVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~----~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
.++|+|...+..+.+.+ ..++.||.|.|||..+...+...+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 35899999999988653 478999999999988765555444
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.48 E-value=0.0035 Score=49.83 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=34.6
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
+++.||+|+|||..++..+...+..+. +++|++.. ....+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~---~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE---PGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC---cEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999888777776665543 78888754 4455666666554
No 227
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.47 E-value=0.028 Score=60.25 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=121.5
Q ss_pred CCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 18 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
.+++-|++++..++.+ +-.++.++.|+|||.+. -.+...+... +.+++.++|+..-+..+.+..... .
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~-------A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQ--GYEIQIITAGSLSAQELRQKIPRL-------A 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhcch-------h
Confidence 6889999999998875 56899999999999764 4444444432 338999999987666655543211 0
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC-CccCcEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGV 174 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~i~ 174 (369)
.+...+...+.. ..-..|.+.|. .....+..-+++|+||+.++. ...+..++... +.+.++++
T Consensus 499 ------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 011111111111 11122333333 122222345899999999874 34455566555 35677887
Q ss_pred EEeeCC------hhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHH-HHHHHhcc-CCCeEEEeCCHh
Q 017573 175 FSATMP------PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-CDLYETLA-ITQSVIFVNTRR 246 (369)
Q Consensus 175 ~saT~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~-~~k~lv~~~~~~ 246 (369)
+.-+-. .+....+.........+...... ...+ .+.. .........+ ..++...+ ..+++|+..+..
T Consensus 563 vGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq--~~~v--~i~~-~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 563 LNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQ--KASV--EISE-AVDKLRVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EcChhhcCccccchHHHHHHHCCCcEEEeeccccc--Ccce--eeec-cCchHHHHHHHHHHHhcccccCceEEEcCCcH
Confidence 766531 22333333322121222111111 1111 1111 1122222233 33333332 236899999988
Q ss_pred hHHHHHHHHhhC----C------CeeEEecC-CCCHHHHHHHHHHHhcCC
Q 017573 247 KVDWLTDKMRSR----D------HTVSATHG-DMDQNTRDIIMREFRSGS 285 (369)
Q Consensus 247 ~~~~~~~~l~~~----~------~~~~~~~~-~~~~~~r~~~~~~f~~~~ 285 (369)
+.+.+....+.. | .....+.. +++..++. ....|+.|+
T Consensus 638 dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r-~~~~Yr~Gd 686 (1960)
T TIGR02760 638 EQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRR-NAAHYKQGM 686 (1960)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHh-hHhhcCCCC
Confidence 887776665432 2 23333333 45666655 336666554
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=97.45 E-value=0.001 Score=61.39 Aligned_cols=122 Identities=13% Similarity=0.063 Sum_probs=74.1
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc--EE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV--KV 95 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~--~v 95 (369)
.|+|+|++.+..+..++-.++..+-..|||.++...++....... +..+++++|+..-+....+.++.+....+. ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 689999999988766777789999999999887654443333222 338999999998888887777655433211 10
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
.... ... ..-.+.++..|.+.|.+. ......+.+++++||+|...
T Consensus 138 ~i~~-~~~---~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 138 GIVE-WNK---GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred ceee-cCc---cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC
Confidence 0000 000 000012344554444321 11233346789999999764
No 229
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.44 E-value=0.00093 Score=54.43 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=60.2
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 114 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 114 (369)
.++++||+|+|||-. +.++.+.+....++.+++++... .........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 489999999999974 45555555544344477776543 332222222211
Q ss_pred CcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhhCCc-cCcEEEEEeeCChh
Q 017573 115 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPA-KVQVGVFSATMPPE 182 (369)
Q Consensus 115 ~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~-~~~~i~~saT~~~~ 182 (369)
...+.+...+.. .+++++|++|.+.+.. +...+..+++.+.. +.++++.|..++..
T Consensus 86 -----~~~~~~~~~~~~-------~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 -----GEIEEFKDRLRS-------ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp -----TSHHHHHHHHCT-------SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred -----ccchhhhhhhhc-------CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 122334333332 6999999999986542 45666666666544 45566555455433
No 230
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0016 Score=56.97 Aligned_cols=127 Identities=20% Similarity=0.148 Sum_probs=63.1
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
+++.+++.+|||+|||..+...+......... .++.+++... .-.--.++++.+....++.+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~-~R~ga~EqL~~~a~~~gv~~~~~------------- 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDS-YRIGGHEQLRIFGKILGVPVHAV------------- 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEeccc-ccccHHHHHHHHHHHcCCceEec-------------
Confidence 35788999999999998876555443322111 1455554322 11111233444433334443322
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhhCCccCcEEEEEeeCChhHHH
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVGVFSATMPPEALE 185 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~ 185 (369)
-+...+...+.+ ..+.++++||++-...... ..+.+..+.....+...++.++||...+...
T Consensus 201 --------~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 201 --------KDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred --------CCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 222223222322 1235899999997542211 2222332222222234477789998765543
No 231
>PRK06893 DNA replication initiation factor; Validated
Probab=97.41 E-value=0.00053 Score=56.40 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=28.4
Q ss_pred CccEEEEechhHhhc-cCcHHHHHHHHhhCCc-cCcEEEEEeeCChh
Q 017573 138 YIKMFVLDEADEMLS-RGFKDQIYDIFQLLPA-KVQVGVFSATMPPE 182 (369)
Q Consensus 138 ~~~~viiDE~H~~~~-~~~~~~~~~~~~~~~~-~~~~i~~saT~~~~ 182 (369)
..+++++||+|.+.. ..+...+..+++.... +.+++.+|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 368999999998753 3334456666655543 34566677775443
No 232
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0016 Score=55.87 Aligned_cols=144 Identities=14% Similarity=0.079 Sum_probs=75.7
Q ss_pred CCCCcHhhhhhhhcccc----C---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 16 FEKPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~----~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
+..++|+|..++..+.. + ...++.||.|.||+..+...+...+-.+..... -|+. ++.+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~----------c~~~~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT----------RQLIA 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH----------HHHHh
Confidence 35789999999988764 2 358999999999998876555544433221111 1111 11111
Q ss_pred cccCcEEEEEE--CCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC
Q 017573 89 DYLGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 166 (369)
Q Consensus 89 ~~~~~~v~~~~--~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 166 (369)
....-++..+. .+.. .. .....|.|-....+.+.+...... ...+++|||++|.+.... ...+.+++..-
T Consensus 69 ~g~HPD~~~i~~~p~~~--~~----k~~~~I~idqIR~l~~~~~~~p~~-g~~kV~iI~~ae~m~~~A-aNaLLKtLEEP 140 (319)
T PRK08769 69 AGTHPDLQLVSFIPNRT--GD----KLRTEIVIEQVREISQKLALTPQY-GIAQVVIVDPADAINRAA-CNALLKTLEEP 140 (319)
T ss_pred cCCCCCEEEEecCCCcc--cc----cccccccHHHHHHHHHHHhhCccc-CCcEEEEeccHhhhCHHH-HHHHHHHhhCC
Confidence 11122233221 1110 00 001123333333333333333222 246899999999985333 55666667776
Q ss_pred CccCcEEEEEeeCC
Q 017573 167 PAKVQVGVFSATMP 180 (369)
Q Consensus 167 ~~~~~~i~~saT~~ 180 (369)
++...++++|..+.
T Consensus 141 p~~~~fiL~~~~~~ 154 (319)
T PRK08769 141 SPGRYLWLISAQPA 154 (319)
T ss_pred CCCCeEEEEECChh
Confidence 66666666655443
No 233
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.40 E-value=0.0013 Score=67.47 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=81.6
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
++++-|++++.. .+++++|.|+.|||||.+..--++..+..+....++++||=|+.-+.++.+++.+.....- .
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~-~--- 74 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKAL-Q--- 74 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHH-h---
Confidence 357899999973 6889999999999999998887777776553334799999999999999888877543210 0
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCc--cEEEEechhH
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYI--KMFVLDEADE 149 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~--~~viiDE~H~ 149 (369)
.........+.+..-...-|+|.++|...+-+.....-++ ++=|.||...
T Consensus 75 --~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 --QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0111111222223334678999999965544433322222 3455887765
No 234
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.40 E-value=0.0015 Score=58.83 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=24.4
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
.+++.||+|+|||..+. ++.+.+.....+.+++++..
T Consensus 138 ~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEH
Confidence 57999999999997753 44444443333336777643
No 235
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.39 E-value=0.00017 Score=66.77 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=99.1
Q ss_pred CCCCcHhhhhhhhcccc--------C--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 16 FEKPSAIQQRGIVPFCK--------G--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~--------~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
..++...|.+++-...+ | -.++|-...|.||-.+..-.|++...++.+ ++|++.-+..|.-+..+.++
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK--rAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK--RALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc--eeEEEEeccccccchhhchh
Confidence 35688889988855432 3 357888888888876655555555555543 89999999999988888888
Q ss_pred HhccccCcEEEEEECCc----chHHHHHHHccCCcEEEeccHHHHHHHHcCCCC------------CCC-ccEEEEechh
Q 017573 86 ALGDYLGVKVHACVGGT----SVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR------------PDY-IKMFVLDEAD 148 (369)
Q Consensus 86 ~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~------------~~~-~~~viiDE~H 148 (369)
..... ++.|..+..-. ..++. . ..+-.|+++||..|........-. ... =++||+||||
T Consensus 340 DigA~-~I~V~alnK~KYakIss~en-~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 340 DIGAT-GIAVHALNKFKYAKISSKEN-T--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hcCCC-Cccceehhhccccccccccc-C--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Confidence 76433 45554433211 00011 0 112469999997774322211000 011 1699999999
Q ss_pred Hhhcc---------CcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 149 EMLSR---------GFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 149 ~~~~~---------~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
...+. ...+.+..+-+.+| +.+++.-|||-.
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGA 455 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGA 455 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCC
Confidence 87541 13466667777776 566888899954
No 236
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0037 Score=56.20 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
++.+++.+|+|+|||.++...+.... ..+. .++.++.--..-. ...+++..+....++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~-~a~eqL~~~a~~~~vp~~~-------------- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRI-GAVEQLKTYAKIMGIPVEV-------------- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHH-HHHHHHHHHHHHhCCceEc--------------
Confidence 56789999999999987765544433 2221 2566665322110 0113333333222333211
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHHHHHHHh-hCCccCcEEEEEeeCChhHHHH
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQ-LLPAKVQVGVFSATMPPEALEI 186 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~~~~~~~-~~~~~~~~i~~saT~~~~~~~~ 186 (369)
+.+++.+...+... ..+++|++|.+-+... ......+..++. ...+....+.++||........
T Consensus 284 -------~~~~~~l~~~l~~~----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 284 -------VYDPKELAKALEQL----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred -------cCCHHhHHHHHHHh----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 12333444444331 2369999998865321 112234445544 2223344677899987644443
No 237
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.38 E-value=0.0015 Score=53.83 Aligned_cols=41 Identities=10% Similarity=0.299 Sum_probs=24.5
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCccCc-EEEEEeeCC
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ-VGVFSATMP 180 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~-~i~~saT~~ 180 (369)
.+++++||+|.+.... ...+..+++....... ++.++++.+
T Consensus 91 ~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 91 AELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred CCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5799999999875332 4445555554433333 455666644
No 238
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0013 Score=59.59 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=58.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
..+++.|++|+|||..+ .++.+.+.....+.+++++.+ ..+.......+..-
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~-------------------------- 193 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKT-------------------------- 193 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHh--------------------------
Confidence 35899999999999654 455555544333446777665 44544444333220
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhcc-CcHHHHHHHHhhCCc-cCcEEEEEeeCCh
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPA-KVQVGVFSATMPP 181 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~-~~~~i~~saT~~~ 181 (369)
. ...+.+...+. ..+++++||+|.+... .....+..+++.+.. +.+++ +|+..++
T Consensus 194 --~---~~~~~~~~~~~-------~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iI-ltsd~~P 250 (450)
T PRK14087 194 --H---KEIEQFKNEIC-------QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLF-FSSDKSP 250 (450)
T ss_pred --h---hHHHHHHHHhc-------cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEE-EECCCCH
Confidence 0 01122222222 3689999999987643 234556666655543 34555 4544433
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.37 E-value=0.0009 Score=55.26 Aligned_cols=36 Identities=6% Similarity=-0.019 Sum_probs=23.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
..++++||+|+|||..+.....+.... +.++.++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEH
Confidence 678999999999997654333333222 225666543
No 240
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00077 Score=60.58 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=16.8
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~ 55 (369)
..+++||.|+|||.++...+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999988754444
No 241
>PRK12377 putative replication protein; Provisional
Probab=97.37 E-value=0.0018 Score=53.52 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=26.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
.++++.||+|+|||..+...+......+. .+++ ++...+..++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~---~v~~-i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGR---SVIV-VTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC---CeEE-EEHHHHHHHH
Confidence 67999999999999776544443333322 4544 3444555544
No 242
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.37 E-value=0.00045 Score=63.45 Aligned_cols=145 Identities=15% Similarity=0.084 Sum_probs=80.8
Q ss_pred Hhhhhhhhccc-----cC----CcEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 21 AIQQRGIVPFC-----KG----LDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 21 ~~Q~~~~~~~~-----~~----~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
|+|+.++..+. .+ +.+++..|-|-|||..+...++..+ ..+..+..++++++++.-+....+.+.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57777776655 12 4579999999999976655444333 44555568999999999999998888877544
Q ss_pred cCcEEEEEECCcchHHHHHH-HccCCcEEEeccHHHHHHHHc--CCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC
Q 017573 91 LGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 167 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~-~~~~~~iiv~t~~~l~~~~~~--~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~ 167 (369)
.+....... .+. ......|.....+.+...+.. ......+.+++|+||+|...+......+..-....+
T Consensus 81 ~~~l~~~~~--------~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~ 152 (477)
T PF03354_consen 81 SPELRKRKK--------PKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARP 152 (477)
T ss_pred Chhhccchh--------hhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCC
Confidence 211110000 000 011123333322333222222 223334468999999999865433333333333322
Q ss_pred ccCcEEE
Q 017573 168 AKVQVGV 174 (369)
Q Consensus 168 ~~~~~i~ 174 (369)
+++++.
T Consensus 153 -~pl~~~ 158 (477)
T PF03354_consen 153 -NPLIII 158 (477)
T ss_pred -CceEEE
Confidence 444444
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.36 E-value=0.0015 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~ 55 (369)
+..+++.||+|+|||..+...+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999987654433
No 244
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.36 E-value=0.00067 Score=65.71 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
..|++-|++++.+- ...++|.|++|||||.+...-+...+.. +-...++|+++.|+.-+.++.+.+.+...
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 46899999999763 5789999999999999987777776654 33344899999999999999999887653
No 245
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.34 E-value=0.00045 Score=61.06 Aligned_cols=55 Identities=29% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCcHhhhhhhhcc------ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 18 KPSAIQQRGIVPF------CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 18 ~~~~~Q~~~~~~~------~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
+|++-|+++++.+ .++.++++.|+-|+|||..+ -.+.+.+... +..+++++|+-.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~~--~~~~~~~a~tg~ 61 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRSR--GKKVLVTAPTGI 61 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhccc--cceEEEecchHH
Confidence 4678899999888 67889999999999999764 4444444432 225777777643
No 246
>PRK08727 hypothetical protein; Validated
Probab=97.34 E-value=0.0016 Score=53.67 Aligned_cols=35 Identities=20% Similarity=0.050 Sum_probs=22.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
..+++.||+|+|||..+.....+....+ .+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEe
Confidence 4589999999999976544333333332 2666654
No 247
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.32 E-value=0.00082 Score=51.89 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=61.7
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
...++.||.|+||+..+...+...+...... . .|..-.. ++.......-++..+......
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~-~---~c~~c~~-------c~~~~~~~~~d~~~~~~~~~~--------- 79 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNE-D---PCGECRS-------CRRIEEGNHPDFIIIKPDKKK--------- 79 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT-T-----SSSHH-------HHHHHTT-CTTEEEEETTTSS---------
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCC-C---CCCCCHH-------HHHHHhccCcceEEEeccccc---------
Confidence 4579999999999988766666555443322 1 2222111 222211112233333322210
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
..|-+-....+...+...... ...+++|+||+|.+.... ...+.+++..-+....++++|..+.
T Consensus 80 -~~i~i~~ir~i~~~~~~~~~~-~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 80 -KSIKIDQIREIIEFLSLSPSE-GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp -SSBSHHHHHHHHHHCTSS-TT-SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred -chhhHHHHHHHHHHHHHHHhc-CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 012121112222222222222 347899999999876443 5667777777777777666665554
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.31 E-value=0.0021 Score=58.75 Aligned_cols=105 Identities=13% Similarity=0.243 Sum_probs=56.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
..+++.||+|+|||..+. ++.+.+.....+.+++++.. ..+..+....++.
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~--------------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN--------------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc---------------------------
Confidence 458999999999997654 34444443322335666644 3444433332211
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhhCCc-cCcEEEEEeeCCh
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPA-KVQVGVFSATMPP 181 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~-~~~~i~~saT~~~ 181 (369)
.+.+.+...+. ..+++++||+|.+.... ....+..+++.+.. ..+++ +|++.++
T Consensus 200 ------~~~~~~~~~~~-------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~ii-its~~~p 255 (450)
T PRK00149 200 ------NTMEEFKEKYR-------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIV-LTSDRPP 255 (450)
T ss_pred ------CcHHHHHHHHh-------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEE-EECCCCH
Confidence 01123333222 26899999999885432 23445555544432 34444 5555443
No 249
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.30 E-value=0.004 Score=52.83 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH
Q 017573 5 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 5 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
+++.++|..-+..+-.+.-.+++.-+..+.-+++.|++|+|||..++..+.+.+... +.+++|++--. -..++.+.+
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~-~~~~~~~r~ 78 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEE-PVVRTARRL 78 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEccc-CHHHHHHHH
Confidence 355666665455554444444555566678899999999999987766666554441 22788876432 234444444
Q ss_pred H
Q 017573 85 R 85 (369)
Q Consensus 85 ~ 85 (369)
.
T Consensus 79 ~ 79 (271)
T cd01122 79 L 79 (271)
T ss_pred H
Confidence 3
No 250
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.30 E-value=0.00065 Score=65.45 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=56.3
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
.+++-|++++.+ ..++++|.|++|||||.+.+.-+...+.. +....++++|+.++.-+.++.+.+.+..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 378899999875 35789999999999999988888877754 3334489999999999999999887754
No 251
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0013 Score=60.52 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=25.8
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
+++++|+||+|++.... ...+.+.+...|+...+++.|
T Consensus 119 ~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 119 RFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 46899999999986544 344555666666666666544
No 252
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.28 E-value=0.00068 Score=65.65 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
..|++-|++++.+. .+.++|.|++|||||.+...-+...+.. +-...++|+++-|+..+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 46999999999753 5789999999999999987777766653 33334899999999999999999887643
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.26 E-value=0.0035 Score=51.69 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=29.3
Q ss_pred cHhhhhhhhcccc--------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 20 SAIQQRGIVPFCK--------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 20 ~~~Q~~~~~~~~~--------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
.+.|+.++..+.+ ...+++.+++|+|||..+...+.+....+. +++++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~---~v~~i 133 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK---SVLII 133 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEE
Confidence 3456556544432 147899999999999776544444333322 56555
No 254
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0016 Score=61.54 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=24.2
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
+++++||||+|++.... ...+.+++..-++...+|+.|
T Consensus 119 r~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 47899999999986544 344455555555555455433
No 255
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.24 E-value=0.00025 Score=54.81 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=53.6
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCc
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 116 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 116 (369)
++.|+-|-|||.+.-+++...+..+. .++++-+|+.+-++...+.+.+-....+.+.... ...........++..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKK---KRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhccccccccccc---cccccccccccccce
Confidence 47899999999765444444443333 3799999999887777766655433333332000 000000111123456
Q ss_pred EEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 117 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 117 iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
|-+..|+.+.... ...|++|+|||=.+ ....+..++...+ .+.+|.|..
T Consensus 76 i~f~~Pd~l~~~~-------~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAEK-------PQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred EEEECCHHHHhCc-------CCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeecc
Confidence 7777777664321 12489999999876 3445555554443 566677764
No 256
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.23 E-value=0.002 Score=54.22 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~ 53 (369)
..++++.||+|+|||..+-..
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 367899999999999876433
No 257
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0021 Score=58.44 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~ 55 (369)
+..+++||.|+|||.++.+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 5689999999999988754443
No 258
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.002 Score=55.40 Aligned_cols=138 Identities=8% Similarity=-0.033 Sum_probs=68.1
Q ss_pred CcHhhhhhhhcccc----C---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 19 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~----~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
++|+|+..++.+.+ + ...++.||.|.||+..+...+...+-....+... |-. ...++.+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~---Cg~-------C~sC~~~~~g~ 72 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQP---CGQ-------CHSCHLFQAGN 72 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCC---CCC-------CHHHHHHhcCC
Confidence 47888888877663 2 4578999999999988765555444322111010 100 11233332222
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 171 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
.-++..+.+... ..|-|-....+.+.+..... ....+++|+|++|.+.... ...+.+++..-|+...
T Consensus 73 HPD~~~i~p~~~-----------~~I~id~iR~l~~~~~~~~~-~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~ 139 (325)
T PRK06871 73 HPDFHILEPIDN-----------KDIGVDQVREINEKVSQHAQ-QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTY 139 (325)
T ss_pred CCCEEEEccccC-----------CCCCHHHHHHHHHHHhhccc-cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeE
Confidence 222332222100 01211122222222222222 2346899999999986433 4555566666555555
Q ss_pred EEEEEeeC
Q 017573 172 VGVFSATM 179 (369)
Q Consensus 172 ~i~~saT~ 179 (369)
+++.|..+
T Consensus 140 fiL~t~~~ 147 (325)
T PRK06871 140 FLLQADLS 147 (325)
T ss_pred EEEEECCh
Confidence 55544443
No 259
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.002 Score=55.68 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
.+.|+++|+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 56899999999999876
No 260
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0023 Score=59.64 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=24.8
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEee
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 178 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 178 (369)
+++++|+||+|++.... ...+.+.+...+....+|+ ++|
T Consensus 118 k~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 46899999999886443 3445555555555554554 444
No 261
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.17 E-value=0.002 Score=53.01 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=69.1
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhcccc-----CcEEEEEECCcchH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGDYL-----GVKVHACVGGTSVR 105 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~-----~~~v~~~~~~~~~~ 105 (369)
.|..+++.+|+|+|||..++..+.+.+.+ +. ++++++-. +-.+++.+++..+.... ..............
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 45778999999999999888888877776 55 78888854 33455666666542111 00111221111100
Q ss_pred HHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc----cCcHHHHHHHHhhCCccCcEEEEEee
Q 017573 106 EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS----RGFKDQIYDIFQLLPAKVQVGVFSAT 178 (369)
Q Consensus 106 ~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~----~~~~~~~~~~~~~~~~~~~~i~~saT 178 (369)
.. . -...+.+...+.+.. ...+.+.+|+|-...+.. ......+..+...+.......++++.
T Consensus 94 ~~--------~--~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 94 GW--------S--PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp T---------T--SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cc--------c--ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00 0 122333333322210 111138999999988821 22334455555555555555566666
No 262
>PRK09183 transposase/IS protein; Provisional
Probab=97.16 E-value=0.011 Score=49.49 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=26.7
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
+..+.++++.||+|+|||..+..........+. +++++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~---~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGI---KVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEe
Confidence 456789999999999999776555443333332 566653
No 263
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0027 Score=59.13 Aligned_cols=39 Identities=15% Similarity=0.378 Sum_probs=24.2
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEe
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
+++++||||+|++....+ +.+.++++.-+....+|+.|-
T Consensus 124 r~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 124 RFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 478999999999864432 334444444445555555443
No 264
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.011 Score=46.08 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=60.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
.-.++.+|+.||||...+..+.+....+. ++++..|...- . .+........+..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~----------R---~~~~~V~Sr~G~~---------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDT----------R---YGVGKVSSRIGLS---------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEeccccc----------c---cccceeeeccCCc----------
Confidence 34589999999999876666555554544 88998886321 0 0111111122221
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhh
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 165 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~ 165 (369)
..-+.|-+...+...+........ +++|.+||++.+... .-..+..+.+.
T Consensus 59 ~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~~-~v~~l~~lad~ 108 (201)
T COG1435 59 SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDEE-LVYVLNELADR 108 (201)
T ss_pred ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCHH-HHHHHHHHHhh
Confidence 123556666777777666443333 689999999976432 23444444444
No 265
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.0025 Score=61.89 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=26.5
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+++++||||+|++.... ...+.++++..+....+|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 347899999999986443 445556666666666566544
No 266
>PRK08116 hypothetical protein; Validated
Probab=97.10 E-value=0.0091 Score=50.29 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=25.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
..++++|++|+|||..+.. +++.+.... ..++++ +...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~~--~~v~~~-~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEKG--VPVIFV-NFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHcC--CeEEEE-EHHHHHH
Confidence 3499999999999987654 444443322 245554 4344444
No 267
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0024 Score=61.51 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=23.2
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
+++++||||+|++.... ...+.+++..-+....+|+.
T Consensus 119 k~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 46899999999985332 34445555554545544443
No 268
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.06 E-value=0.0056 Score=53.78 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=23.9
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++|+||+|.+... ....+..++...+....+++.+
T Consensus 125 ~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 125 DYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 3579999999987532 2344555555555556555533
No 269
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.06 E-value=0.00093 Score=52.43 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=30.4
Q ss_pred HHHHhCCCCCCcHhhhhhhhcc------ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 9 RGIYAYGFEKPSAIQQRGIVPF------CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 9 ~~l~~~~~~~~~~~Q~~~~~~~------~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
..++.+.+...+..++..+..+ .+++++++.||+|+|||..+...+.+.+..+. +++++ +...|..
T Consensus 17 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~---~v~f~-~~~~L~~ 88 (178)
T PF01695_consen 17 ATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGY---SVLFI-TASDLLD 88 (178)
T ss_dssp -----------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEE-EHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc---ceeEe-ecCceec
Confidence 3445555555555555555443 35689999999999999887666666655443 56664 4444544
No 270
>PTZ00293 thymidine kinase; Provisional
Probab=97.04 E-value=0.0085 Score=47.84 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
|.=-++.||+++|||.-.+..+.+....+. +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~---kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK---KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 344588999999999766655555444443 799988864
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=97.03 E-value=0.008 Score=52.25 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=25.6
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
..+++|+||+|.+.... ...+.+.+...++...+++ +++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeCC
Confidence 36899999999986433 4555566666555555554 4443
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0077 Score=54.58 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=23.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
..+++.||+|+|||..+. ++.+.+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH
Confidence 358999999999997654 444444322 236777654
No 273
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0032 Score=54.70 Aligned_cols=140 Identities=10% Similarity=-0.036 Sum_probs=71.5
Q ss_pred CCcHhhhhhhhcccc----C---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 18 KPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~----~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
.++|+|+..++.+.+ + ...++.||.|.||+..+...+...+-..+.+...-=.|++ ++.+...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~s----------C~~~~~g 71 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRG----------CQLMQAG 71 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH----------HHHHHcC
Confidence 468899999888763 2 3578999999999988765555444322111011001222 3333222
Q ss_pred cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccC
Q 017573 91 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 170 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
..-++..+.+... +..|-|-....+.+.+...... ...+++|+|++|.+.... ...+.+++..=|+..
T Consensus 72 ~HPD~~~i~p~~~----------~~~I~idqiR~l~~~~~~~~~~-g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t 139 (334)
T PRK07993 72 THPDYYTLTPEKG----------KSSLGVDAVREVTEKLYEHARL-GGAKVVWLPDAALLTDAA-ANALLKTLEEPPENT 139 (334)
T ss_pred CCCCEEEEecccc----------cccCCHHHHHHHHHHHhhcccc-CCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCe
Confidence 2223333322111 0112222222333333333322 346899999999985332 445555555545555
Q ss_pred cEEEEEeeC
Q 017573 171 QVGVFSATM 179 (369)
Q Consensus 171 ~~i~~saT~ 179 (369)
.++++|..+
T Consensus 140 ~fiL~t~~~ 148 (334)
T PRK07993 140 WFFLACREP 148 (334)
T ss_pred EEEEEECCh
Confidence 555555444
No 274
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.02 E-value=0.014 Score=47.92 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=35.6
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..+.-+++.+++|+|||..++..+...+..+. ++++++.. .-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGY---SVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---cEEEEeCC-CCHHHHHHHHHHh
Confidence 44678899999999999886666665544443 78888854 3334555555443
No 275
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.003 Score=55.90 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=22.2
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
..+++|+||+|.+.... ...+.+.+...+....+++.
T Consensus 119 ~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 35899999999986433 23344444444445545543
No 276
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.99 E-value=0.006 Score=54.89 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
.+++|.||+|+|||..+- .++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 679999999999997754 344444332222245555
No 277
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.99 E-value=0.008 Score=49.79 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=38.2
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.|..++|.||+|+|||..++..+.+.+..+. +++|++-. .-..+..+++..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~e-e~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVALE-EHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEee-CCHHHHHHHHHHh
Confidence 3577899999999999988777777665544 78888843 4555666666654
No 278
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.98 E-value=0.0029 Score=56.92 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=78.5
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH-HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE-LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~-l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
-.++.++.|||||.++...++..+.....+.+++++-|+.. +.......+.......++....-....+. .......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~ 80 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNT 80 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCC
Confidence 35789999999998887766666555322347888888876 55666777766555445432221111110 0001111
Q ss_pred CCcEEEecc-HHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhc
Q 017573 114 GVHVVVGTP-GRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM 191 (369)
Q Consensus 114 ~~~iiv~t~-~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~ 191 (369)
+..|++..- +.... +.. ...++.+.+||+..+....+.....+ ++. +.....+++|.+|....--....+.
T Consensus 81 g~~i~f~g~~d~~~~-ik~----~~~~~~~~idEa~~~~~~~~~~l~~r-lr~-~~~~~~i~~t~NP~~~~~w~~~~f~ 152 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-LKS----GAGIAIIWFEEASQLTFEDIKELIPR-LRE-TGGKKFIIFSSNPESPLHWVKKRFI 152 (396)
T ss_pred CeEEEeecccCChhH-hhC----cceeeeehhhhhhhcCHHHHHHHHHH-hhc-cCCccEEEEEcCcCCCccHHHHHHH
Confidence 334555443 22211 111 12268999999998854433333322 222 1222247789998653333333433
No 279
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.95 E-value=0.004 Score=57.71 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc--CcEEEEEECCcchHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL--GVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~ 110 (369)
.+-.++..|--.|||.+.. +++..+.....+-++++.+|....++...+++....... +..+....| ... ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~ 328 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFS 328 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEE
Confidence 4678999999999998765 333333323234489999999999999998887754421 111222222 111 000
Q ss_pred HccC--CcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 111 LQAG--VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 111 ~~~~--~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
+.++ ..|.+.| ....+......++++|+|||+.+....+...+ .++.. .+++++++|.|-.
T Consensus 329 f~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 329 FPDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred ecCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCC
Confidence 1111 2344432 12334456667999999999988655433333 22222 2778899998854
No 280
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.035 Score=50.74 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=25.0
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
..++.+.+.+|+|+|||..+...+....... .+.++.++.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVT 387 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEe
Confidence 3467889999999999987654444333322 122555554
No 281
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.03 Score=46.58 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=67.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
+.+++.+|+|+||+..+=..+ ...+ .+++-+.+..|+..|.-+-.++.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVA------TEAn-STFFSvSSSDLvSKWmGESEkLV------------------------- 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVA------TEAN-STFFSVSSSDLVSKWMGESEKLV------------------------- 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHH------hhcC-CceEEeehHHHHHHHhccHHHHH-------------------------
Confidence 458999999999996542111 1122 57777777788765544333321
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC---cHHHHHHHHhh----C---C-ccCcEEEEEeeCCh-
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG---FKDQIYDIFQL----L---P-AKVQVGVFSATMPP- 181 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~---~~~~~~~~~~~----~---~-~~~~~i~~saT~~~- 181 (369)
..|+.+-++.. .++|.+||++.++... -.+...++... + . ..--++.+.||..+
T Consensus 215 ---------knLFemARe~k-----PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 215 ---------KNLFEMARENK-----PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred ---------HHHHHHHHhcC-----CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 12334444433 4889999999877422 22222333222 1 1 23446777888654
Q ss_pred hHHHHHHHhcCCCEEEEe
Q 017573 182 EALEITRKFMNKPVRILV 199 (369)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~ 199 (369)
.+...+++-+.+.+.+..
T Consensus 281 ~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 281 VLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred hHHHHHHHHhhcceeccC
Confidence 444555666665554443
No 282
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.93 E-value=0.0061 Score=62.79 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhc--cCCCccEEEEcCCHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~--~~~~~~~liv~P~~~l~~q~ 80 (369)
..+++-|++++..++.+ +-++|.+..|+|||.+. ..++..+.. ...+.+++.++|+-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 37999999999999865 67899999999999773 222322221 11233688899987665544
No 283
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.92 E-value=0.02 Score=51.50 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=64.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC--HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT--RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~--~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
..+++.+++|+|||.++...+.. +... +.+++++... +.-+ .+++..+....++.+........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~-L~~~--g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d-------- 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARY-FKKK--GLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKD-------- 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHHc--CCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccC--------
Confidence 45789999999999887655543 3332 2256666542 2211 22333333333433321110000
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHh
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 190 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~ 190 (369)
..+.+...+.... ..++||+|.+-+.. +....+++..+.....+...++.++|+...+..+....+
T Consensus 162 ---------~~~i~~~al~~~~----~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 162 ---------AVEIAKEGLEKFK----KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred ---------HHHHHHHHHHHhh----cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 0011122222211 13889999885432 222334555555555555556777887765555555443
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=96.92 E-value=0.008 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~ 55 (369)
+.++++.||+|+|||.++-..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999988754433
No 285
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.91 E-value=0.0033 Score=61.14 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=57.3
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-CCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
..|++-|++++.+. .+.++|.|+.|||||.+...-+...+... -...++|.++-|+.-+..+.+.+.+...
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 46899999999763 57899999999999999887777777543 2334899999999999999888876643
No 286
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.90 E-value=0.0024 Score=59.56 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=77.6
Q ss_pred CCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH-HHHHHhccccCc
Q 017573 17 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE-KVMRALGDYLGV 93 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~-~~~~~~~~~~~~ 93 (369)
...+|||.+..+.+-.. +.+.+..+.-+|||.+++.++...+...+. .+|++.|+...++++. +.+..+......
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 46789999999998876 689999999999999776666665555443 7999999999999886 455544332211
Q ss_pred EEEEEEC---Ccc-hHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 94 KVHACVG---GTS-VREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 94 ~v~~~~~---~~~-~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
--..+.. ... .......+. +..+.+....+-. .+....++++++||++.+.
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCc------ccccCCcCEEEEechhhcc
Confidence 0011111 000 001111112 3345544432221 1233347899999999984
No 287
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.89 E-value=0.0083 Score=62.60 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=45.1
Q ss_pred CCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhc--cCCCccEEEEcCCHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~--~~~~~~~liv~P~~~l~~q~ 80 (369)
..+++.|++++..++.+ +-++|.+..|+|||.+. -.+...+.. ...+.+++.++|+-.-+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 47899999999999975 56899999999999763 344433321 11233688899997665543
No 288
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.005 Score=57.43 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=18.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
...|+.+|.|+|||.++...+...
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999876555443
No 289
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.008 Score=54.81 Aligned_cols=21 Identities=29% Similarity=0.134 Sum_probs=16.5
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~ 55 (369)
..+++||+|+|||..+-..+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999988754433
No 290
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0061 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
+..++.||.|+|||..|...+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999998876554433
No 291
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.87 E-value=0.01 Score=50.43 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~ 52 (369)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45899999999999987743
No 292
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.86 E-value=0.008 Score=54.39 Aligned_cols=149 Identities=12% Similarity=0.011 Sum_probs=85.4
Q ss_pred CCCcHhhhhhhhcccc------C----CcEEEEcCCCChhhHHHHHHH-HHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCK------G----LDVIQQAQSGTGKTATFCSGI-LQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~------~----~~~li~~~tG~GKT~~~~~~~-~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
..+-|+|..++-.+.- + +.++|..|-+-|||..+...+ ...+.....+..+.|++|+..-+.+.....+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 3688999999988762 1 347999999999996654322 3333333445589999999988888888777
Q ss_pred HhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc--CCCCCCCccEEEEechhHhhccCcHHHHHHHH
Q 017573 86 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 163 (369)
Q Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~--~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~ 163 (369)
......+ ......+.......|...-.......+.. ...+..+..+.|+||.|.+.... ..+..+.
T Consensus 140 ~mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~ 207 (546)
T COG4626 140 DMVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAK 207 (546)
T ss_pred HHHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHH
Confidence 7654322 10111111111111222211122222222 22334446799999999875542 4555555
Q ss_pred hhCC--ccCcEEEEEe
Q 017573 164 QLLP--AKVQVGVFSA 177 (369)
Q Consensus 164 ~~~~--~~~~~i~~sa 177 (369)
..+. +..++++.|.
T Consensus 208 ~g~~ar~~~l~~~ITT 223 (546)
T COG4626 208 GGLGARPEGLVVYITT 223 (546)
T ss_pred hhhccCcCceEEEEec
Confidence 4443 3556666555
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.86 E-value=0.024 Score=50.67 Aligned_cols=131 Identities=10% Similarity=0.138 Sum_probs=63.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC--CHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHc
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP--TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 112 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P--~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 112 (369)
-+.+.+++|+|||+++.-.+......+ .++++++. .+.-+. ++++.+....++.+........+...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i----- 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKI----- 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHH-----
Confidence 478999999999987655544332222 26777664 233332 23333333334444332222111000
Q ss_pred cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHh
Q 017573 113 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 190 (369)
Q Consensus 113 ~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~ 190 (369)
..+.+ ..... ..+++||+|=+-+... ......+..+.....+...++.++||...+..+....+
T Consensus 171 --------~~~~l-~~~~~-----~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 171 --------ASEGV-EKFKK-----ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred --------HHHHH-HHHHh-----CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 00011 11111 2257778877654321 22334555555555555556667777665544444443
No 294
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.85 E-value=0.018 Score=52.29 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
..+++.||+|+|||..+. ++.+.+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 358999999999997654 44444443333336777754
No 295
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.84 E-value=0.0071 Score=47.39 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=74.2
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH-HHHHHHhccccCcEEEEEECCcchHHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTSVREDQR 109 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 109 (369)
.+...+.+..++|.|||.+++..++.++..+. +++++-=.+.-...= ...+.+. .++.......+.....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~--- 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWET--- 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccC---
Confidence 35688999999999999999988888887776 677765433221000 1112221 1233222111111000
Q ss_pred HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc--HHHHHHHHhhCCccCcEEEEEeeCChhHHH
Q 017573 110 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALE 185 (369)
Q Consensus 110 ~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~~~~~~~ 185 (369)
.+..--............. .+....+++||+||+-...+.++ .+.+..++...|+...+|+..-.+++.+.+
T Consensus 91 ---~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 ---QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ---CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000011111111111 12233479999999998876664 466777777777676666544444444433
No 296
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.84 E-value=0.0098 Score=55.34 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=57.1
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 114 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 114 (369)
.++++|++|+|||..+. ++.+.+.....+.+++|+.. ..+..++...+..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~---------------------------- 365 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD---------------------------- 365 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh----------------------------
Confidence 38999999999997643 44444433223336666554 3444433332211
Q ss_pred CcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhhCCc-cCcEEEEEeeCC
Q 017573 115 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPA-KVQVGVFSATMP 180 (369)
Q Consensus 115 ~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~-~~~~i~~saT~~ 180 (369)
...+.|.+.+. .+++++|||+|.+.... +...+..+++.+.. +.++++.|-.++
T Consensus 366 -----~~~~~f~~~y~-------~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 366 -----GKGDSFRRRYR-------EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred -----ccHHHHHHHhh-------cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 01122222222 26899999999886433 34556666666544 455665444333
No 297
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.0057 Score=57.58 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=24.1
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 119 k~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 46899999999875433 334455555555566565544
No 298
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.011 Score=51.74 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=58.5
Q ss_pred CCc-EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 33 GLD-VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 33 ~~~-~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
..+ .++.||+|+|||..+...+-........+...-..+ ..+.........++..+..+...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~lel~~s~~~------- 85 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC----------RSCKLIPAGNHPDFLELNPSDLR------- 85 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch----------hhhhHHhhcCCCceEEecccccC-------
Confidence 344 999999999999887655544443322211111111 11222212222233333332221
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLR--PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~--~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..++ ..+............ ...+.++|+||++.+... ....+.+.+..-+.+..+++.+
T Consensus 86 --~~~i---~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 86 --KIDI---IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred --CCcc---hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 1111 222222222222222 245799999999998642 2455555555555556555544
No 299
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0061 Score=56.88 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=24.6
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 46899999999986443 344455555555555555544
No 300
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.81 E-value=0.0094 Score=51.84 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=25.6
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+++|+||+|.+........+..++...+...++++.|
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 58999999998843334455666667666666666533
No 301
>PF13173 AAA_14: AAA domain
Probab=96.80 E-value=0.026 Score=41.66 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=26.9
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCChhH
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEA 183 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~ 183 (369)
-.++++||+|.+ .++...+..+.+.. ++.+++ +|++.....
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii-~tgS~~~~l 102 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKII-LTGSSSSLL 102 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEE-EEccchHHH
Confidence 478999999998 45667777777755 344444 466554333
No 302
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.011 Score=54.63 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=24.6
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++|+||+|++.... ...+.+.+...+....+++.|
T Consensus 119 ~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 35899999999986433 345555556555555555544
No 303
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.0044 Score=58.30 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=23.8
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
+++++||||+|++.... ...+.+++..-+....+|+.
T Consensus 119 ~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 46899999999986443 44455555555555544443
No 304
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.78 E-value=0.0051 Score=55.92 Aligned_cols=82 Identities=29% Similarity=0.255 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCCCcHh-------hhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCCH
Q 017573 5 ENLLRGIYAYGFEKPSAI-------QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTR 74 (369)
Q Consensus 5 ~~i~~~l~~~~~~~~~~~-------Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~~ 74 (369)
+-++..|++..-.+++++ |.+++. -..++-.+|+|..|||||.+++--++..+... ..++.+|++.|++
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~ 270 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNR 270 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcH
Confidence 345667777665565543 555552 24567789999999999999875554444321 1222599999999
Q ss_pred HHHHHHHHHHHHh
Q 017573 75 ELAQQIEKVMRAL 87 (369)
Q Consensus 75 ~l~~q~~~~~~~~ 87 (369)
....-..+.+-++
T Consensus 271 vFleYis~VLPeL 283 (747)
T COG3973 271 VFLEYISRVLPEL 283 (747)
T ss_pred HHHHHHHHhchhh
Confidence 9888777766554
No 305
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.77 E-value=0.019 Score=43.73 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=70.8
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH---HHHHHHHHHHHhccccCcEEEEEECCcc-----hHH
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE---LAQQIEKVMRALGDYLGVKVHACVGGTS-----VRE 106 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~---l~~q~~~~~~~~~~~~~~~v~~~~~~~~-----~~~ 106 (369)
-+.|..++|.|||.+++..++..+..+. +++++-=.+. -.+ ...+.++. +++......+.. ...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~~~~gE--~~~l~~l~---~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGGWKYGE--LKALERLP---NIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCCCccCH--HHHHHhCC---CcEEEECCCCCccCCCChHH
Confidence 4677888999999999888888877765 7777432222 111 11233331 333332222111 001
Q ss_pred HHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC--cHHHHHHHHhhCCccCcEEEEEeeCChhHH
Q 017573 107 DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATMPPEAL 184 (369)
Q Consensus 107 ~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~--~~~~~~~~~~~~~~~~~~i~~saT~~~~~~ 184 (369)
..... -+.+ ..... ......+|++|+||+-.....+ ..+.+..+++..|....+|+.+-.+++.+.
T Consensus 76 ~~~~a----------~~~~-~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 76 DIAAA----------AEGW-AFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred HHHHH----------HHHH-HHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 00000 0111 11111 1123347999999999876544 346777788887777777765555555544
Q ss_pred H
Q 017573 185 E 185 (369)
Q Consensus 185 ~ 185 (369)
+
T Consensus 144 e 144 (159)
T cd00561 144 E 144 (159)
T ss_pred H
Confidence 3
No 306
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0079 Score=56.53 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=24.7
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..++++|+||+|++.... ...+.+.+..-++...+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 346899999999886433 345555555555555555444
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.76 E-value=0.0053 Score=45.52 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.6
Q ss_pred EEEEcCCCChhhHHHH
Q 017573 36 VIQQAQSGTGKTATFC 51 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~ 51 (369)
+++.||+|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999997653
No 308
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.0063 Score=57.08 Aligned_cols=22 Identities=18% Similarity=0.074 Sum_probs=17.1
Q ss_pred cEEEEcCCCChhhHHHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGILQ 56 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~ 56 (369)
-.+++||.|+|||.++...+-.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3599999999999887554443
No 309
>PHA00729 NTP-binding motif containing protein
Probab=96.75 E-value=0.012 Score=47.51 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.++++.|++|+|||..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 379999999999997764
No 310
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.0052 Score=53.33 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=30.3
Q ss_pred CcHhhhhhhhccccC-----CcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 19 PSAIQQRGIVPFCKG-----LDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~-----~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
++|+|+..++.+... ...++.||.|.||+..+...+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 478888888887752 4578999999999988765554444
No 311
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.74 E-value=0.019 Score=50.64 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
+.-+++.+++|+|||..++..+......+ .+++|+... +...|......++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECC-cCHHHHHHHHHHc
Confidence 35579999999999987765555444332 278888754 3344555444443
No 312
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.74 E-value=0.012 Score=52.53 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.5
Q ss_pred CcHhhhhhhhccccCCcEEEEcCCCChhhHHHH
Q 017573 19 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~ 51 (369)
+......++..+..++++++.+|+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777789999999999999998764
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.0077 Score=55.24 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~ 55 (369)
+..+++||.|+|||.++-..+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988754443
No 314
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.73 E-value=0.013 Score=53.21 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
+.-+++.+++|+|||..++..+......+ .+++|+.-. +...|......++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEcc-ccHHHHHHHHHHc
Confidence 35679999999999987766655544332 378998754 3445665555544
No 315
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.72 E-value=0.026 Score=52.83 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=49.4
Q ss_pred CCCcHhhhhhhhccc---cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 17 EKPSAIQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~---~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
.-|.|.=.+-++++. +.+-.++.+|-|-|||.+..+.+...+... +.+++|.+|...-+.+..+.+.+...
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 344555555555554 346778999999999987765555444312 23899999999888888887776654
No 316
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.71 E-value=0.057 Score=45.32 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=65.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC---HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT---RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~---~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
..+.+.+++|+|||..+...+......+ .++.++..- .+...||..... ..++++..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~---~~v~~i~~D~~ri~~~~ql~~~~~----~~~~~~~~------------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVK----TIGFEVIA------------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHHhh----hcCceEEe-------------
Confidence 5789999999999987654443332222 245555542 244555543322 22333321
Q ss_pred HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEEeeCCh-hHHHHHH
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPP-EALEITR 188 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~-~~~~~~~ 188 (369)
..+++.+...+..-. ...+++++++|.+=+.. +......+..+.....+...++.++||... +..+...
T Consensus 136 --------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 136 --------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred --------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 123334433332210 11246999999886543 222334455555555444446678998765 4444444
Q ss_pred Hh
Q 017573 189 KF 190 (369)
Q Consensus 189 ~~ 190 (369)
.+
T Consensus 207 ~f 208 (270)
T PRK06731 207 NF 208 (270)
T ss_pred Hh
Confidence 43
No 317
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.01 Score=52.30 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=30.6
Q ss_pred ccEEEEechhHhhcc-CcHHHHHHHHhhCCccC-cEEEEEeeCChh
Q 017573 139 IKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKV-QVGVFSATMPPE 182 (369)
Q Consensus 139 ~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~~~-~~i~~saT~~~~ 182 (369)
++++++|.++.+... .+...+..+++.+.... |+++.|..+|..
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 699999999998754 45677777777776544 666555555444
No 318
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.69 E-value=0.048 Score=45.07 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
+.-+++.+++|+|||..+...+...+..+. +++|+.-... ..+..+++..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~---~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGK---KVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCC---EEEEEEcCCC-HHHHHHHHHHC
Confidence 466899999999999887777666655443 7888876533 35566666655
No 319
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.68 E-value=0.037 Score=53.45 Aligned_cols=40 Identities=10% Similarity=0.419 Sum_probs=23.0
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEEEEee
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSAT 178 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT 178 (369)
...+||+||+|.+.... ...+..+++... ...+++++..+
T Consensus 869 ~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred cceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 35789999999987542 344555554322 23344443443
No 320
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.01 Score=51.02 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=70.8
Q ss_pred CCcHhhhhhhhcccc----C---CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 18 KPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~----~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
.++|+|+..+..+.+ + ...++.||.|.||+..+...+...+-..... . -|.. ...++.+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~---~Cg~-------C~sC~~~~~g 71 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-E---ACGF-------CHSCELMQSG 71 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-C---CCCC-------CHHHHHHHcC
Confidence 568888888877763 2 3589999999999987765555444332211 1 0111 0112222222
Q ss_pred cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccC
Q 017573 91 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 170 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
..-++..+..... +..|-|-....+.+.+.... .....+++|||++|.+... ....+.+++..-|++.
T Consensus 72 ~HPD~~~i~p~~~----------~~~I~vdqiR~l~~~~~~~~-~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t 139 (319)
T PRK06090 72 NHPDLHVIKPEKE----------GKSITVEQIRQCNRLAQESS-QLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNC 139 (319)
T ss_pred CCCCEEEEecCcC----------CCcCCHHHHHHHHHHHhhCc-ccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCe
Confidence 2223333322110 00121112122222222222 2234689999999998533 2455556666655566
Q ss_pred cEEEEEeeCC
Q 017573 171 QVGVFSATMP 180 (369)
Q Consensus 171 ~~i~~saT~~ 180 (369)
.++++|..+.
T Consensus 140 ~fiL~t~~~~ 149 (319)
T PRK06090 140 LFLLVTHNQK 149 (319)
T ss_pred EEEEEECChh
Confidence 5555555543
No 321
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.013 Score=53.94 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..++++|+||+|.+.... ...+.+.+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 346899999999986433 345555666656666666544
No 322
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.0082 Score=56.16 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~ 55 (369)
+..+++||.|+|||.++-..+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999988755443
No 323
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.0024 Score=53.21 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=47.9
Q ss_pred HHHHhCCCCCCcHhhhhhhhccc-------cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHH
Q 017573 9 RGIYAYGFEKPSAIQQRGIVPFC-------KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 81 (369)
Q Consensus 9 ~~l~~~~~~~~~~~Q~~~~~~~~-------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 81 (369)
+.++.+.|......++.++..+. ++.++++.||+|+|||..+.....+.+ .. + ..++.++...++.++.
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g-~sv~f~~~~el~~~Lk 149 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA--G-ISVLFITAPDLLSKLK 149 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--C-CeEEEEEHHHHHHHHH
Confidence 34455666666667777665543 567999999999999988765555555 32 2 4555566667776655
Q ss_pred HHH
Q 017573 82 KVM 84 (369)
Q Consensus 82 ~~~ 84 (369)
..+
T Consensus 150 ~~~ 152 (254)
T COG1484 150 AAF 152 (254)
T ss_pred HHH
Confidence 544
No 324
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.64 E-value=0.046 Score=42.24 Aligned_cols=139 Identities=15% Similarity=0.221 Sum_probs=63.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
.-+.|....|-|||.+++-.++.++-.+. +++++-=.+.-. ...+...+....++.......+........
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~---rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~---- 74 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGM---RVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMNEE---- 74 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGH----
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCC---EEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCCCc----
Confidence 34678888999999999999888887766 888887655511 112222221111233322221111000000
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc--HHHHHHHHhhCCccCcEEEEEeeCChhHH
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEAL 184 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~~~~~~ 184 (369)
..+ ....+..++..... .....+++||+||+-...+.++ ...+..++..-|....+|+....+++.+.
T Consensus 75 ~~~--~~~~~~~~~~a~~~-i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~ 144 (172)
T PF02572_consen 75 EED--RAAAREGLEEAKEA-ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELI 144 (172)
T ss_dssp HHH--HHHHHHHHHHHHHH-TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHH
T ss_pred HHH--HHHHHHHHHHHHHH-HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHH
Confidence 001 11111112222221 2234589999999998876653 35667777777777766654444444443
No 325
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.63 E-value=0.01 Score=47.15 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=18.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
...++.||+|+|||..+...+...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4589999999999987655444433
No 326
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.63 E-value=0.024 Score=48.71 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
++++++.||+|+|||..+...+......+. ++.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~---~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGV---SSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC---CEEEEE
Confidence 468999999999999876544444443332 555543
No 327
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.61 E-value=0.019 Score=47.73 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=30.3
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAP 72 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P 72 (369)
+..|.-++|.|++|+|||..++..+.+.+.. +. +++|++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~---~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGK---PVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---ceEEEeC
Confidence 3456778999999999998877666666554 33 7888884
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.59 E-value=0.0066 Score=48.49 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+.+.+|+||++.+.+. ..+.+.+.+....+..++.+..
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaC 150 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALAC 150 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhh
Confidence 44689999999998643 3566666666666555554433
No 329
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.57 E-value=0.034 Score=48.45 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=24.1
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+++++||+|.+.... ...+..++...++...+++.+
T Consensus 103 ~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 103 FKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred ceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 5799999999875432 345555666656666566544
No 330
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.009 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=17.9
Q ss_pred cEEEEcCCCChhhHHHHHHHHHh
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
..+++||+|+|||.++...+...
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999998876554433
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.052 Score=48.26 Aligned_cols=124 Identities=16% Similarity=0.165 Sum_probs=62.3
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEcCC--HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAPT--RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~P~--~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
.-+++.+|+|+|||..+...+.... ..+. ++.++.-- +..+.+ ++..+....++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~---~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGK---SVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC---eEEEecccchhhhHHH---HHHHHHHhcCCCeee-------------
Confidence 3478999999999988766655432 2222 55555522 222222 233332222332211
Q ss_pred HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCC---ccCcEEEEEeeCChhHHHH
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLP---AKVQVGVFSATMPPEALEI 186 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~---~~~~~i~~saT~~~~~~~~ 186 (369)
+.....+...+.. ..+++|++|=+-+.. +......+..+..... +...++.++||...+....
T Consensus 285 --------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 285 --------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred --------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 0112233333332 346999999665432 2223344455554432 2235677899988744443
Q ss_pred HHH
Q 017573 187 TRK 189 (369)
Q Consensus 187 ~~~ 189 (369)
...
T Consensus 352 ~~~ 354 (432)
T PRK12724 352 VLK 354 (432)
T ss_pred HHH
Confidence 333
No 332
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.011 Score=54.44 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.1
Q ss_pred EEEEcCCCChhhHHHHHHHH
Q 017573 36 VIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~ 55 (369)
+++.||+|+|||.++...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999988754443
No 333
>PRK10867 signal recognition particle protein; Provisional
Probab=96.52 E-value=0.076 Score=47.81 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=24.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
-+++++++|+|||.++.-.+...... .+.+++++.-
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~ 137 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAA 137 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEc
Confidence 47899999999998876665544333 1226666653
No 334
>PRK05973 replicative DNA helicase; Provisional
Probab=96.50 E-value=0.0078 Score=49.27 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=40.8
Q ss_pred hhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 26 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 26 ~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..--+..|.-++|.|++|+|||..++..+.+.+..+. +++|++-- .-..|..+++..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge---~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR---TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---eEEEEEEe-CCHHHHHHHHHHc
Confidence 4445556778999999999999988877776665543 78887643 3345666666655
No 335
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.50 E-value=0.0061 Score=47.02 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=69.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH-HHHHHHHhccccCcEEEEEECCc-----chHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ-IEKVMRALGDYLGVKVHACVGGT-----SVRED 107 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q-~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 107 (369)
.-+.+..++|.|||.+++..++.+...+. +++++-=.+.-... -...+.++ ++.+.....+. .....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~---~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~~~~~~~~ 78 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGK---KVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWETQNREAD 78 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeecCCCcHHH
Confidence 45788899999999999888888877765 67766322211000 00112221 22222211111 00010
Q ss_pred HHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc--HHHHHHHHhhCCccCcEEEEEeeCChhHHH
Q 017573 108 QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALE 185 (369)
Q Consensus 108 ~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~~~~~~~ 185 (369)
.. ........... .+....+|+||+||+-...+.++ .+.+..+++..|+...+|+..-.+++.+.+
T Consensus 79 ~~-----------~~~~~~~~a~~-~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 79 TA-----------IAKAAWQHAKE-MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred HH-----------HHHHHHHHHHH-HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 00 01111111111 11223479999999998776653 356677777777777777644445444433
No 336
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.48 E-value=0.0095 Score=48.99 Aligned_cols=85 Identities=26% Similarity=0.385 Sum_probs=64.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCc-chHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 64 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT-SVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 64 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
.|.+||||.+---+.++.+.++.+... +..+.-+.... ..+++...+. ...+|.|+||.++..+++.+.+..+.+..
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 457899999888888888888877421 22333333333 4555555555 47899999999999999999999999999
Q ss_pred EEEechhH
Q 017573 142 FVLDEADE 149 (369)
Q Consensus 142 viiDE~H~ 149 (369)
||+|--|.
T Consensus 205 ivlD~s~~ 212 (252)
T PF14617_consen 205 IVLDWSYL 212 (252)
T ss_pred EEEcCCcc
Confidence 99998774
No 337
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.04 Score=48.18 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
++.+.+.+|+|+|||..+...+......+. ++.+++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~---~V~lIta 242 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR---TVGFITT 242 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeC
Confidence 566899999999999876655544433332 5666554
No 338
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.47 E-value=0.025 Score=47.19 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=58.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH---HHhccccCcEEEEEECCcchHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM---RALGDYLGVKVHACVGGTSVREDQRI 110 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~ 110 (369)
.-++|.+|||||||.+ +.++++++++.... .+|=+=.-.+-+.+..+.+ ++. |... ..-....+..
T Consensus 126 GLILVTGpTGSGKSTT-lAamId~iN~~~~~-HIlTIEDPIE~vh~skkslI~QREv----G~dT-----~sF~~aLraA 194 (353)
T COG2805 126 GLILVTGPTGSGKSTT-LAAMIDYINKHKAK-HILTIEDPIEYVHESKKSLINQREV----GRDT-----LSFANALRAA 194 (353)
T ss_pred ceEEEeCCCCCcHHHH-HHHHHHHHhccCCc-ceEEecCchHhhhcchHhhhhHHHh----cccH-----HHHHHHHHHH
Confidence 4589999999999976 56778888776543 3433322222221111111 111 1111 1111233344
Q ss_pred HccCCcEEEec----cHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCc
Q 017573 111 LQAGVHVVVGT----PGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 168 (369)
Q Consensus 111 ~~~~~~iiv~t----~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~ 168 (369)
+..++|||+.- .++..-.+.... -+.+|+--.|. .+..+.+.++...+|.
T Consensus 195 LReDPDVIlvGEmRD~ETi~~ALtAAE-----TGHLV~~TLHT---~sA~~ti~RiidvFp~ 248 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRLALTAAE-----TGHLVFGTLHT---NSAAKTIDRIIDVFPA 248 (353)
T ss_pred hhcCCCEEEEeccccHHHHHHHHHHHh-----cCCEEEEeccc---ccHHHHHHHHHHhCCh
Confidence 55667777652 233333333222 25677777775 3344566666666664
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.46 E-value=0.11 Score=43.93 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=64.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC--CHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP--TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P--~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
+-+.+.+|+|+|||.++...+......+ .+++++.- .+.-+.+ ++..+....+..+. ......+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~--~~~~~~dp~---- 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVI--KQKEGADPA---- 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEE--eCCCCCCHH----
Confidence 4577889999999988765554443332 26776663 2332222 22222222243332 211110000
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCC------ccCcEEEEEeeCChhHH
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLP------AKVQVGVFSATMPPEAL 184 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~------~~~~~i~~saT~~~~~~ 184 (369)
......+.. ....++++|++|=+-+.. +.....++..+.+..+ +...++.++||...+..
T Consensus 141 -----------~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 141 -----------AVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred -----------HHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 111111111 012336899999776543 2223344555554443 44556778888765544
Q ss_pred HHHHHhc
Q 017573 185 EITRKFM 191 (369)
Q Consensus 185 ~~~~~~~ 191 (369)
.....+.
T Consensus 208 ~~~~~f~ 214 (272)
T TIGR00064 208 EQAKVFN 214 (272)
T ss_pred HHHHHHH
Confidence 4444433
No 340
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.028 Score=49.26 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
..+.++||||+|.+.... ...+.+++..-+....++++|..+
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECCh
Confidence 346899999999985433 455666666655566666665443
No 341
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.46 E-value=0.14 Score=39.98 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=21.7
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
+++.+++|+|||..+...+......+. +++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~---~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGK---KVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---cEEEEE
Confidence 578999999999887555544333322 555544
No 342
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.43 E-value=0.04 Score=45.36 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
.|..+++.+++|+|||..+...+.+.+..+. ++++++.- ....+..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~---~~~~is~e-~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD---PVIYVTTE-ESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEEcc-CCHHHHHHHHHH
Confidence 4678899999999999877665555554433 67777642 333444444433
No 343
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.017 Score=51.37 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
.+.+++|+||+|.+.... ...+.+++..-++...++ +++|-
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fI-L~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWL-LCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEE-EEECC
Confidence 346899999999985433 344555555544455444 44443
No 344
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.012 Score=51.94 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=68.5
Q ss_pred hhhhhhhccc----cC---CcEEEEcCCCChhhHHHHHHHHHhhhccCCC-------ccEEEEcCCHHHHHHHHHHHHHh
Q 017573 22 IQQRGIVPFC----KG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQ-------CQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 22 ~Q~~~~~~~~----~~---~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~-------~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.|.++...+. .+ ...++.||.|+||+..+...+...+-....+ +..+-+|+.-. .++.+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~-------~c~~i 95 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP-------VARRI 95 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh-------HHHHH
Confidence 3555555443 22 3589999999999988766555554332211 11222333211 12222
Q ss_pred ccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC
Q 017573 88 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 167 (369)
Q Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~ 167 (369)
.....-++..+......... .....|.|-....+.+.+... .......++|+||+|.+... ....+.+.+..-+
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~----~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp 169 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGK----RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPP 169 (365)
T ss_pred HccCCCCeEEEecccccccc----cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCC
Confidence 11111222222221100000 001234333333333333322 22344689999999987533 2445556666655
Q ss_pred ccCcEEEEEeeC
Q 017573 168 AKVQVGVFSATM 179 (369)
Q Consensus 168 ~~~~~i~~saT~ 179 (369)
....++++|..+
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 556566555554
No 345
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.41 E-value=0.023 Score=48.66 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
...++|+|+|+|||..+=
T Consensus 163 pSmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLAR 180 (554)
T ss_pred CceEEecCCCCchHHHHH
Confidence 468999999999997763
No 346
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.011 Score=55.63 Aligned_cols=24 Identities=21% Similarity=0.033 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
...|++||.|+|||.++...+...
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999998876554433
No 347
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.015 Score=54.01 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+++++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 346899999999886433 334445555555555555544
No 348
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.024 Score=53.33 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
...+++|+||+|.+.... ...+.+.+...++...+|+.|
T Consensus 131 a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 346899999999986433 344455555555566566544
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.38 E-value=0.012 Score=55.83 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
..+-+++++|.|+|||+.+..+.. .... +..+.++.-.. -..+-.+.++.+....+--+... ++. .. .+.
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~-~~~~---~~~v~Wlslde-~dndp~rF~~yLi~al~~~~p~~-~~~---a~-~l~ 105 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE-LAAD---GAAVAWLSLDE-SDNDPARFLSYLIAALQQATPTL-GDE---AQ-TLL 105 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH-hcCc---ccceeEeecCC-ccCCHHHHHHHHHHHHHHhCccc-cHH---HH-HHH
Confidence 346689999999999987655543 2222 22566665332 12222222222222111111111 111 11 111
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
.+ +..+ ..+.+.+.+...--...+.=++|+|+.|.+.+......+..+++..|++...++.|-+-+
T Consensus 106 q~--~~~~-~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 106 QK--HQYV-SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred Hh--cccc-cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 11 1111 122222222221111122348999999999988888999999999999999888887754
No 350
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.038 Score=52.97 Aligned_cols=124 Identities=18% Similarity=0.117 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 112 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 112 (369)
++-+.+.+|+|+|||+++...+........ +.++.+++.-..-+ -..++++.+....++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv~---------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRI-GALEQLRIYGRILGVPVH---------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccch-HHHHHHHHHHHhCCCCcc----------------
Confidence 345789999999999776544433322211 11555555432211 012334444333333221
Q ss_pred cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHHHHHHHhhCCccCcEEEEEeeCChhH
Q 017573 113 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEA 183 (369)
Q Consensus 113 ~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~ 183 (369)
.+.+++.+...+... ...++|+||=+-+... ....+.+..+.....+...++.++||...+.
T Consensus 247 -----~~~~~~~l~~al~~~----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~ 309 (767)
T PRK14723 247 -----AVKDAADLRFALAAL----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT 309 (767)
T ss_pred -----ccCCHHHHHHHHHHh----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH
Confidence 122455555555432 2357888887765431 2223333344434444455667888875443
No 351
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.33 E-value=0.044 Score=44.77 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=28.8
Q ss_pred ccEEEEechhHhh-ccCc-------HHHHHHHHhh---CCccCcEEEEEeeCChhHHH
Q 017573 139 IKMFVLDEADEML-SRGF-------KDQIYDIFQL---LPAKVQVGVFSATMPPEALE 185 (369)
Q Consensus 139 ~~~viiDE~H~~~-~~~~-------~~~~~~~~~~---~~~~~~~i~~saT~~~~~~~ 185 (369)
..++.+||.+.+. +..| .+.++.++.. +..+.-++...||..++..+
T Consensus 211 PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 211 PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 4788899999764 2222 2333344333 34566688889998776544
No 352
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.33 E-value=0.014 Score=48.62 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=25.4
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHH
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELA 77 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~ 77 (369)
.+|.||||+||+-. +-.++..-.-.+....+++|+|.+..+
T Consensus 90 ~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 58999999999943 222222211122333799999987543
No 353
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.017 Score=53.99 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=16.6
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~ 55 (369)
..++.||.|+|||.++...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999988754433
No 354
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.32 E-value=0.061 Score=48.39 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=23.6
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEcC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAP 72 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~P 72 (369)
-+++.+++|+|||.++.-.+.... ..+. +++++.-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~---kV~lV~~ 136 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGK---KVLLVAC 136 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCC---eEEEEec
Confidence 478999999999988766555433 2222 5666553
No 355
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.32 E-value=0.036 Score=42.87 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=71.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH-HHHHHHhccccCcEEEEEECCcchHHHHHHHc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTSVREDQRILQ 112 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 112 (369)
.-++|.-..|-|||.+++-.++.++-.+. ++.|+-=-+.-...= ...+.++ +..+....-+........ .
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~~~~~~~----~~~v~~~~~~~g~tw~~~--~ 99 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEEAALEKF----GLGVEFHGMGEGFTWETQ--D 99 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHHHHHHhh----ccceeEEecCCceeCCCc--C
Confidence 34789999999999999999998888776 676664322211111 1112222 222222111111000000 0
Q ss_pred cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc--HHHHHHHHhhCCccCcEEEEEeeCChhHHHH
Q 017573 113 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 186 (369)
Q Consensus 113 ~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~ 186 (369)
++.++ ............ .+....+++||+||.-.....++ .+.+..++..-|....+|+..-..++.+.+.
T Consensus 100 ~~~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 100 READI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred cHHHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 01122 111111111111 12223479999999998775553 4667777777776776666444444454443
No 356
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.31 E-value=0.22 Score=38.65 Aligned_cols=138 Identities=15% Similarity=0.145 Sum_probs=74.5
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCc-----chH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT-----SVR 105 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~-----~~~ 105 (369)
....-+.|.-..|-|||.+++-.++.++-++. +++|+-=.+.-...=...+-+... ++.......+. ...
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~---rV~iiQFlKg~~~~GE~~~l~~~~--~v~~~~~g~~~~~~~~~~~ 93 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGT---PVLIVQFLKGGIQQGPDRPIQLGQ--NLDWVRCDLPRCLDTPHLD 93 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCC---EEEEEEEecCCCcchHHHHHHhCC--CcEEEECCCCCeeeCCCcC
Confidence 34456788899999999999999998887766 787776444321111111111111 23332211110 000
Q ss_pred -HHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc--HHHHHHHHhhCCccCcEEEEEeeCChh
Q 017573 106 -EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPE 182 (369)
Q Consensus 106 -~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~--~~~~~~~~~~~~~~~~~i~~saT~~~~ 182 (369)
... ...+........ .+....++++|+||+-...+.++ .+.+..+++..|+...+|+..-.+++.
T Consensus 94 ~~~~-----------~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~ 161 (178)
T PRK07414 94 ESEK-----------KALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPES 161 (178)
T ss_pred HHHH-----------HHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 010 011111111111 12233479999999998876664 366777778777777777644445544
Q ss_pred HHH
Q 017573 183 ALE 185 (369)
Q Consensus 183 ~~~ 185 (369)
+.+
T Consensus 162 Lie 164 (178)
T PRK07414 162 LLA 164 (178)
T ss_pred HHH
Confidence 443
No 357
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.30 E-value=0.024 Score=60.75 Aligned_cols=62 Identities=29% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHH---HHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 17 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFC---SGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~---~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
..+++.|++++..++.+ +-++|.++.|+|||.+.- .++...+... +.+++.++|+..-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHH
Confidence 47999999999998865 556889999999997652 2333333322 23788889996655544
No 358
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.044 Score=50.28 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=48.1
Q ss_pred CccEEEEechhHhhc-------cCcHHHHHHHHhhC---CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcccccc
Q 017573 138 YIKMFVLDEADEMLS-------RGFKDQIYDIFQLL---PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE 207 (369)
Q Consensus 138 ~~~~viiDE~H~~~~-------~~~~~~~~~~~~~~---~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (369)
...+|.+||++.+.. +...+.++.++..+ .....++.+.||-.|+.-+-.- ..+.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi---------------LRPG 668 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI---------------LRPG 668 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh---------------cCCC
Confidence 358999999998862 11234444444443 4466788899998876543221 1122
Q ss_pred ce-eEEEEEccchhhhHHHHHHHHHh
Q 017573 208 GI-KQFYVNVEKEEWKLETLCDLYET 232 (369)
Q Consensus 208 ~~-~~~~~~~~~~~~~~~~l~~~~~~ 232 (369)
.. ...|+..+..+...+.|..+.+.
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhcc
Confidence 22 34556667777777777776664
No 359
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.26 E-value=0.038 Score=46.57 Aligned_cols=120 Identities=15% Similarity=0.185 Sum_probs=59.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccC----CCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 109 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 109 (369)
.+.++.|++|-|||.++--..-.+-.... .-+-+.+-+|...-...++..+-... +..... .......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~~---~~~~~~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYRP---RDRVAKL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccCC---CCCHHHH--
Confidence 57999999999999765322221111100 11234555666655555544443321 111100 0000000
Q ss_pred HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH--HHHHHHHhhCCcc--CcEEEEEeeC
Q 017573 110 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAK--VQVGVFSATM 179 (369)
Q Consensus 110 ~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~--~~~~~~~~~~~~~--~~~i~~saT~ 179 (369)
-....+.+...+ .+++||||+|++...+.. +...+.++.+.+. ..+++ -+|.
T Consensus 134 ------------~~~~~~llr~~~-----vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~-vGt~ 189 (302)
T PF05621_consen 134 ------------EQQVLRLLRRLG-----VRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVG-VGTR 189 (302)
T ss_pred ------------HHHHHHHHHHcC-----CcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEE-eccH
Confidence 011224444433 689999999998755433 3444555555543 33454 3564
No 360
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=96.19 E-value=0.011 Score=46.08 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.8
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
.++.+|++||||.-.+..+......+. +++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~---~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGK---KVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCC---eEEEEEecc
Confidence 478999999999775544443333332 889988864
No 361
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.17 E-value=0.05 Score=51.74 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=89.0
Q ss_pred HHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 8 LRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 8 ~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
-+.+.....+.+..-|.+.+..+.+. +-+++.|+-|=|||.++=+++........ ...+++.+|+.+-++...+...
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHH
Confidence 34454455566666677777777765 35899999999999765544432222221 2379999999999988888777
Q ss_pred HhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhh
Q 017573 86 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 165 (369)
Q Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~ 165 (369)
+-....|.+-.+...... .......+...|=+.+|+... ..-+++|+|||=.+ ....+..+...
T Consensus 283 ~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~ 346 (758)
T COG1444 283 KGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRR 346 (758)
T ss_pred HhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhh
Confidence 755555544222111110 000000111224445554432 01489999999865 34455555555
Q ss_pred CCccCcEEEEEeeCC
Q 017573 166 LPAKVQVGVFSATMP 180 (369)
Q Consensus 166 ~~~~~~~i~~saT~~ 180 (369)
.+ .++||.|.+
T Consensus 347 ~~----rv~~sTTIh 357 (758)
T COG1444 347 FP----RVLFSTTIH 357 (758)
T ss_pred cC----ceEEEeeec
Confidence 43 677788864
No 362
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.16 E-value=0.019 Score=50.52 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=22.5
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhcc
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYG 61 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~ 61 (369)
+-.|+.+++.+|+|+|||..+ ..+.+.+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 346899999999999999764 3455555443
No 363
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.16 E-value=0.14 Score=40.61 Aligned_cols=128 Identities=14% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 112 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 112 (369)
|.-+++.++.|+|||...+..++-.+..+. ++.+++.- .-......++... +..+. ...+.
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~---~v~yvsTe-~T~refi~qm~sl----~ydv~-----------~~~l~ 88 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGY---RVTYVSTE-LTVREFIKQMESL----SYDVS-----------DFLLS 88 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCc---eEEEEEec-hhHHHHHHHHHhc----CCCch-----------HHHhc
Confidence 345799999999999888777777777665 56666532 2222233333322 11110 00011
Q ss_pred cCCcEEEe-----------ccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHH---hhCCccCcEEEEEee
Q 017573 113 AGVHVVVG-----------TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF---QLLPAKVQVGVFSAT 178 (369)
Q Consensus 113 ~~~~iiv~-----------t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~---~~~~~~~~~i~~saT 178 (369)
+. -.++. +...+++.+.+..- ..+-+++|+|-...+........+.+++ +.+....+++.+|+.
T Consensus 89 G~-l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k-~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvh 166 (235)
T COG2874 89 GR-LLFFPVNLEPVNWGRRSARKLLDLLLEFIK-RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVH 166 (235)
T ss_pred ce-eEEEEecccccccChHHHHHHHHHHHhhHH-hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 10 01111 11223333322111 1223899999998876444343444444 334456778999999
Q ss_pred CCh
Q 017573 179 MPP 181 (369)
Q Consensus 179 ~~~ 181 (369)
|..
T Consensus 167 p~~ 169 (235)
T COG2874 167 PSA 169 (235)
T ss_pred hhh
Confidence 864
No 364
>PRK04195 replication factor C large subunit; Provisional
Probab=96.15 E-value=0.038 Score=51.02 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997764
No 365
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.11 E-value=0.019 Score=50.24 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=21.6
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhcc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYG 61 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~ 61 (369)
.|++.+|.||.|+|||..+ ..+++.+...
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I~~n 196 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSITTN 196 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHHHhh
Confidence 5799999999999999654 3455555443
No 366
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.031 Score=48.45 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=70.1
Q ss_pred CcHhhhhhhhccccC-----CcEEEEcCCCChhhHHHHHHHHHhhhccCC-CccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 19 PSAIQQRGIVPFCKG-----LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~-----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~-~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
+||+|+..+..+... ...++.||.|.|||..+...+...+-..+. +...-=-|+ .++.+.....
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~----------~C~~~~~~~H 71 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECM----------SCHLFGQGSH 71 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCH----------HHHHHhcCCC
Confidence 478888888887742 357999999999998876554443322211 000000111 2233322222
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcE
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 172 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
-++..+......+... +....|-|-....+.+.+...... ...+++|+|++|.+... ....+.+++...+....+
T Consensus 72 pD~~~~~p~~~~~~~g---~~~~~I~id~iR~l~~~~~~~p~~-~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~ 146 (325)
T PRK08699 72 PDFYEITPLSDEPENG---RKLLQIKIDAVREIIDNVYLTSVR-GGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVF 146 (325)
T ss_pred CCEEEEeccccccccc---ccCCCcCHHHHHHHHHHHhhCccc-CCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEE
Confidence 3333333211100000 000112222222233333332222 34689999999987543 355566666666555545
Q ss_pred EEEEee
Q 017573 173 GVFSAT 178 (369)
Q Consensus 173 i~~saT 178 (369)
+++|..
T Consensus 147 Ilvth~ 152 (325)
T PRK08699 147 LLVSHA 152 (325)
T ss_pred EEEeCC
Confidence 554433
No 367
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.026 Score=53.35 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=16.6
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~ 55 (369)
..++.||.|+|||.++...+-
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 359999999999988755443
No 368
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.04 Score=47.69 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+.++..+|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 78999999999999765
No 369
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.06 E-value=0.045 Score=46.32 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=23.4
Q ss_pred CcHhhhhhhhccc----cC-CcEEEEcCCCChhhHHHH
Q 017573 19 PSAIQQRGIVPFC----KG-LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 19 ~~~~Q~~~~~~~~----~~-~~~li~~~tG~GKT~~~~ 51 (369)
+++.+.+++..+. .+ ..+++.||+|+|||..+-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 5556666776553 22 358899999999997754
No 370
>PRK06620 hypothetical protein; Validated
Probab=96.06 E-value=0.017 Score=46.92 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..++++||+|+|||..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997653
No 371
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.05 E-value=0.045 Score=49.46 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997764
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.05 E-value=0.066 Score=43.39 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
.|.-+.+.+|+|+|||..++..+.+....+. +++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~---~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGK---KVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC
Confidence 3466899999999999888766666554433 78887764
No 373
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.01 E-value=0.032 Score=49.43 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~ 53 (369)
+..++.||+|+|||..+...
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34799999999999776433
No 374
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.01 E-value=0.052 Score=48.46 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=50.3
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
.+-..|.++.-..-.|.. .|.+=.|||||.+.+.-+.+. ..+.+..++++-+-++.|..++.+...+|+
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l-h~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL-HSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH-hcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 344567777655555655 788999999998765555544 334445589999999999999888777764
No 375
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.00 E-value=0.079 Score=48.10 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=58.1
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVRE 106 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~ 106 (369)
-+..|.-+++.|+||+|||..++..+.+.. ..+. +++|++.- .-..|+..++-.... ++....+ .+.....+
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~---~v~~fSlE-m~~~~l~~Rl~~~~~--~v~~~~~~~~~l~~~~ 263 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALREGK---PVLFFSLE-MSAEQLGERLLASKS--GINTGNIRTGRFNDSD 263 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC---cEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhcCCCCHHH
Confidence 344456789999999999988776665554 2222 67777632 233444433322211 2221111 12222122
Q ss_pred HHH------HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhhc
Q 017573 107 DQR------ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 152 (369)
Q Consensus 107 ~~~------~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 152 (369)
+.. .+. +..+.|. |.+.+....++.......+++||+|=.|.+..
T Consensus 264 ~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 264 FNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 211 111 2345553 33444443332211122478999999988753
No 376
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.02 Score=48.87 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCHHHHHHHH--hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHH
Q 017573 2 GLQENLLRGIY--AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 2 ~l~~~i~~~l~--~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~ 50 (369)
||.++|+..-+ ..+..+|--|++-.++ ..+.+++.+|+|+|||+.+
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH
Confidence 45555544333 3466666666665553 3799999999999999875
No 377
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.98 E-value=0.057 Score=49.58 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.+|+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 578999999999999765
No 378
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.97 E-value=0.013 Score=50.48 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=36.6
Q ss_pred CcHhhhhhhhccc-cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 19 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 19 ~~~~Q~~~~~~~~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
+.+.|.+.+..+. .+++++|+|+||||||..+ -+++..+.......+++.+=...++
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 5567776666555 4688999999999999764 4555554332223366665555554
No 379
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.065 Score=49.26 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=15.2
Q ss_pred EEEEcCCCChhhHHHHHHH
Q 017573 36 VIQQAQSGTGKTATFCSGI 54 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~ 54 (369)
.++.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998765443
No 380
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.016 Score=49.64 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=36.5
Q ss_pred CcHhhhhhhhccc-cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 19 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 19 ~~~~Q~~~~~~~~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
+.+.|.+.+..+. .++++++.|+||||||..+ .+++..+.......+++.+=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 4445555555544 4689999999999999764 4555555443223367776666554
No 381
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.12 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~ 55 (369)
.++-+.+.||+|+|||......+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999977644433
No 382
>PRK06904 replicative DNA helicase; Validated
Probab=95.91 E-value=0.15 Score=46.70 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=58.9
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-EC-CcchHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VG-GTSVRED 107 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~-~~~~~~~ 107 (369)
+..|.-+++.|.||.|||..++-.+.+..... +.+++|++.- --..|+..++-..... +....+ .+ .....++
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQDW 292 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHHHH
Confidence 33456689999999999987765555443321 2256666543 4445555544332221 111111 12 1222222
Q ss_pred HH------HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 108 QR------ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 108 ~~------~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
.+ .+.....+.|- |.+.+....++.......+++||||-.+.+.
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 21 12223446663 4555544333221111247899999999775
No 383
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.90 E-value=0.053 Score=45.64 Aligned_cols=42 Identities=24% Similarity=0.142 Sum_probs=30.8
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
+..|.-+++.|.||.|||..++-.+.+.+.... ..++|++.-
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlE 57 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLE 57 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESS
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCC
Confidence 345567899999999999888877777766532 278888864
No 384
>PF05729 NACHT: NACHT domain
Probab=95.89 E-value=0.073 Score=41.09 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=18.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhc
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDY 60 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~ 60 (369)
-++|.|++|+|||..+...+......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 36899999999997764444433333
No 385
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.88 E-value=0.097 Score=48.36 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
|.-+++.+|+|+|||..++..+.+.+..+. +++|++ ..+-..|..+.+..+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge---~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKE---RAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEE-eeCCHHHHHHHHHHc
Confidence 356899999999999988877777766554 788877 446667777777665
No 386
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.87 E-value=0.08 Score=51.15 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=65.1
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCCCCCCcEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 308 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 308 (369)
.+.++++.+|+..-|...++.+++ .+.++..++|+++..+|.++++...+|+.+|+|+|. .+...+.+.++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999988877666554 468899999999999999999999999999999998 455567788888888
Q ss_pred EecC
Q 017573 309 NYDL 312 (369)
Q Consensus 309 ~~~~ 312 (369)
+-..
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 6543
No 387
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.85 E-value=0.03 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
.+++|.||+|+|||.++ ..+++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999765 3444444
No 388
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.049 Score=47.49 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=24.9
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEe
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
..+++|+||+|.+.... ...+.+.+..-|+...+++.|.
T Consensus 110 ~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 110 NKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 46899999999985432 4455555555555555555443
No 389
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.83 E-value=0.014 Score=57.53 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=74.0
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEecCCcCCCCCCCCcEEEEecC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITTDLLARGIDVQQVSLVINYDL 312 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~G~d~~~~~~vi~~~~ 312 (369)
...++|+|+.-......+...+.-.+.....-.+ .++....+..|.+ ++ +++-++..+.|+|+-.+.+|+..+|
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 3458899988877777777777665544333222 3344556666665 54 5567888899999999999999999
Q ss_pred CCCccchhhhhcccccCCCceeEEE
Q 017573 313 PTQPENYLHRIGRSGRFGRKGVAIN 337 (369)
Q Consensus 313 ~~~~~~~~Q~~GR~~R~~~~~~~~~ 337 (369)
..++..-.|++||+.|.|+.....+
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhh
Confidence 9999999999999999998755443
No 390
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.04 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
...++.||.|+|||..+...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 456999999999998875544433
No 391
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.068 Score=46.18 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=35.1
Q ss_pred EEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 117 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 117 iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
|-|-....+.+.+...... ...+++|+|++|.+.... ...+.+++..-| ...++++|..+
T Consensus 104 I~id~ir~i~~~l~~~p~~-~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLE-APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CcHHHHHHHHHHHccCccc-CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 3344444555555554444 346999999999885333 455566666655 55555555443
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.79 E-value=0.027 Score=47.92 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAP 72 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P 72 (369)
++.+.+.+|+|+|||.++...+...... +. .++.++.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~--~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGN--KKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCC--CeEEEEEC
Confidence 4568899999999998765554444333 21 15665553
No 393
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.77 E-value=0.015 Score=50.16 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=36.4
Q ss_pred CcHhhhhhhhcc-ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 19 PSAIQQRGIVPF-CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 19 ~~~~Q~~~~~~~-~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
+.+.|.+.+... ..++++++.|+||||||.. +.+++..+.......+++.+-...++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 456777777654 4568999999999999955 34444443222222266666666554
No 394
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.74 E-value=0.014 Score=49.68 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=41.9
Q ss_pred CCCCCcHhhhhhhhccccCC-cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 15 GFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
.|..+++-|...+..+...+ ++++++.||||||.. +-++...+.... +++.+=-+.+|
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhh
Confidence 45678899999998888775 999999999999965 334444443333 67776666554
No 395
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.18 Score=44.47 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=19.7
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYG 61 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~ 61 (369)
.++++.|+||+|||.++ ..++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 57999999999999775 4444454443
No 396
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.71 E-value=0.03 Score=53.38 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=16.4
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~ 55 (369)
..++.||.|+|||.++-..+.
T Consensus 42 AYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 368999999999988754433
No 397
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.69 E-value=0.065 Score=51.70 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997764
No 398
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.68 E-value=0.027 Score=47.39 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=39.6
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..++.++|.+++|+|||..++-.+.+.+..+. ++++|+-. +...+..+.+.++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~~-e~~~~l~~~~~~~ 73 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVSTE-ESPEELLENARSF 73 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEec-CCHHHHHHHHHHc
Confidence 34688999999999999988888887777644 78888764 4455555666554
No 399
>PRK08506 replicative DNA helicase; Provisional
Probab=95.67 E-value=0.14 Score=46.97 Aligned_cols=115 Identities=22% Similarity=0.154 Sum_probs=59.7
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 108 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~ 108 (369)
+..|.-+++.|.||.|||..++-.+.+.+..+ .++++++.- --..|+..++-.... ++....+ .+.....++.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g---~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQD---KGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcC---CcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 33456789999999999988877776665433 267776543 344555544433211 1111111 1222222221
Q ss_pred H------HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 109 R------ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 109 ~------~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
. .+. +..+.|- |.+.+....++.......+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1 122 2345543 4445544333321112247899999999775
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.65 E-value=0.48 Score=41.02 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
++-+.+.+|+|+|||..+...+...... +.+++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 3457899999999998765444333222 22666665
No 401
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.037 Score=53.49 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC-CccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~-~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
.+++-|++++... ...++|.|+.|||||.+..--+.+.+..+.. ...++.++=|+.-+.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5889999999776 7889999999999999988888877776433 33689999999889999988888764
No 402
>PRK04328 hypothetical protein; Provisional
Probab=95.64 E-value=0.027 Score=47.01 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=36.7
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.|..+++.+++|+|||..++..+.+.+..+. +++|++- .+-..+..+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEEe-eCCHHHHHHHHHHc
Confidence 3567899999999999887777777666554 7888774 33444555555554
No 403
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.62 E-value=0.34 Score=43.12 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=61.9
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH-HHH---HHHHHHHhccccCcEEEEE--ECCcchHHHHHH
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL-AQQ---IEKVMRALGDYLGVKVHAC--VGGTSVREDQRI 110 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l-~~q---~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 110 (369)
++.++.|+|||......++..+...+....++++ |+..- ... ........... .+..... ....- .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~ 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI------I 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE------E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE------E
Confidence 5789999999988777677666555443345555 65554 443 22333333333 2222221 11111 0
Q ss_pred HccCCcEEEeccHHH--HHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCCh--hHHHH
Q 017573 111 LQAGVHVVVGTPGRV--FDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP--EALEI 186 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l--~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~--~~~~~ 186 (369)
+.++..|.+.+.+.- ..-+. ...++.+++||+-......+...+........... .+..|.|+.+ .....
T Consensus 73 ~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~ 146 (384)
T PF03237_consen 73 LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEI 146 (384)
T ss_dssp ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHH
T ss_pred ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCceeee
Confidence 134455666664321 11111 13478999999887755544444444433333222 2244554433 33344
Q ss_pred HHHhcCCC
Q 017573 187 TRKFMNKP 194 (369)
Q Consensus 187 ~~~~~~~~ 194 (369)
........
T Consensus 147 ~~~~~~~~ 154 (384)
T PF03237_consen 147 FQRNLDDD 154 (384)
T ss_dssp HHHHHCTS
T ss_pred eehhhcCC
Confidence 44444443
No 404
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.60 E-value=0.042 Score=46.14 Aligned_cols=38 Identities=18% Similarity=0.036 Sum_probs=29.3
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
.+.-++|.+++|+|||..++..+.+.+..+. +++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge---~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGN---PVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC---cEEEEEe
Confidence 3566899999999999888777776655443 7888884
No 405
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.58 E-value=0.11 Score=47.44 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
|.-+++.+++|+|||..++..+......+ .+++|+..- +...|......++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECc-CCHHHHHHHHHHc
Confidence 35579999999999988766655544433 278998764 3445555555443
No 406
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.11 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.003 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
...++.||+|+|||.++...+-..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999998875554443
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.52 E-value=0.02 Score=47.26 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.8
Q ss_pred EEEEcCCCChhhHHH
Q 017573 36 VIQQAQSGTGKTATF 50 (369)
Q Consensus 36 ~li~~~tG~GKT~~~ 50 (369)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999754
No 408
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.15 Score=46.50 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~ 57 (369)
++-+.+.||+|+|||+++...+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4568899999999998865554433
No 409
>PRK08006 replicative DNA helicase; Provisional
Probab=95.42 E-value=0.34 Score=44.49 Aligned_cols=117 Identities=19% Similarity=0.085 Sum_probs=58.5
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 108 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~ 108 (369)
+..|.-++|.|.||.|||..++-.+.+..... +.+++|++.- --..|+..++-.... ++....+ .+.....++.
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlE-M~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLE-MPGEQIMMRMLASLS--RVDQTRIRTGQLDDEDWA 295 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 33456679999999999988776665544321 2256666533 334444444433211 1221111 1222223322
Q ss_pred HH------HccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 109 RI------LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 109 ~~------~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
++ +.....+.|- |...+....++.......+++||+|=.|.+.
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 21 1123445554 4444443333211112247999999999875
No 410
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.41 E-value=0.13 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~ 55 (369)
..+.++.||+|+|||..+-..+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 36899999999999987643333
No 411
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.31 E-value=0.2 Score=47.99 Aligned_cols=91 Identities=20% Similarity=0.140 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCC--CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCc
Q 017573 221 WKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296 (369)
Q Consensus 221 ~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 296 (369)
.|.+...+++... .++.+||.++.+..+..+.+.|+... ..+..+|+++++.+|.+.+....+|+.+|+|+|...
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 3444444444332 35689999999999999999998663 579999999999999999999999999999999853
Q ss_pred CCCCCCCCcEEEEecC
Q 017573 297 RGIDVQQVSLVINYDL 312 (369)
Q Consensus 297 ~G~d~~~~~~vi~~~~ 312 (369)
.=..+++...||+.+-
T Consensus 251 vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 251 VFAPVEDLGLVAIWDD 266 (665)
T ss_pred EEeccCCCCEEEEEcC
Confidence 2356667777776653
No 412
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.30 E-value=0.043 Score=45.51 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=22.8
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHHHHhhhc
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 60 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~ 60 (369)
.+..|+.+++.+|.|+|||.. +-.+++.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL-LQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHHhcccc
Confidence 445789999999999999965 3445555443
No 413
>PRK08840 replicative DNA helicase; Provisional
Probab=95.30 E-value=0.33 Score=44.49 Aligned_cols=123 Identities=19% Similarity=0.089 Sum_probs=60.0
Q ss_pred hhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCc
Q 017573 24 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGT 102 (369)
Q Consensus 24 ~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~ 102 (369)
.+.+.-+..|+-+++.|.||.|||..++-.+.+..... +.+++|+..- --..|+...+-.... ++....+ .+..
T Consensus 208 D~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l 282 (464)
T PRK08840 208 NKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQL 282 (464)
T ss_pred HHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCCC
Confidence 33333344566789999999999987765555543221 2256666543 334444444432211 1111111 1222
Q ss_pred chHHHHHH------HccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 103 SVREDQRI------LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 103 ~~~~~~~~------~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
...++.+. +.....+.|- |...+....++.......+++||+|-.|.+.
T Consensus 283 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 283 DDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22232221 2122345553 3344433332221111247899999999875
No 414
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.29 E-value=0.054 Score=47.78 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
.+..+++.+|||||||... .+++..+.......+++.+
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEE
Confidence 4567899999999999764 4555555433222245544
No 415
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.28 E-value=0.15 Score=48.92 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=64.7
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCCCCCCcEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 308 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 308 (369)
.+.++++.+|+..-|...++.+++ .+.++..++|+++..++..+++...+|+.+|+|+|. .+...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999988877666654 478999999999999999999999999999999998 444557777888887
Q ss_pred EecC
Q 017573 309 NYDL 312 (369)
Q Consensus 309 ~~~~ 312 (369)
+-..
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 6553
No 416
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.069 Score=46.61 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+|+++.+|+|+|||..+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 78999999999999765
No 417
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.25 E-value=0.31 Score=47.11 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 312 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 312 (369)
++++|+.+|++..+..+.+.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|.... -..+.++..+|+.+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 568999999999999999988764 67899999999999999999999999999999998432 245667888877654
No 418
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.24 E-value=0.13 Score=50.43 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 4678999999999999764
No 419
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.24 E-value=0.027 Score=49.09 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=29.3
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
+..+++++|.||||||||..+ -+++..+.... +++.+=...++
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~---rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQE---RLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCCCC---CEEEECCCccc
Confidence 335799999999999999663 45555554332 66666666554
No 420
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.34 Score=45.17 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHH
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..+|-.+.+-.+ ...+.+++.+|+|+|||+++
T Consensus 453 p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 453 PLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred hhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 4444544444443 23589999999999999876
No 421
>CHL00176 ftsH cell division protein; Validated
Probab=95.22 E-value=0.15 Score=48.45 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.+|+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999775
No 422
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.20 E-value=0.055 Score=46.78 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997653
No 423
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.086 Score=51.35 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCC-----CeeEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEecC
Q 017573 222 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-----HTVSA-THGDMDQNTRDIIMREFRSGSSRVLITTDL 294 (369)
Q Consensus 222 ~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 294 (369)
..-.+..+.-...++++++.+|+...+...++.|++.. ..+.. +|+.++..+++++++++.+|+.+|+|+|..
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 34445555556667899999999988888888776552 33333 999999999999999999999999999973
No 424
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.89 Score=38.98 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=68.2
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC--HHHHHHHHHHHHHhccccCcEEEEEE-CCcchHHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT--RELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRIL 111 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~--~~l~~q~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~ 111 (369)
-+++.+..|+|||.+..-.+......+. ++++.+.- |+=+. +++..|....+..+.... |+.+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~---~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~Dp-------- 206 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGK---SVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADP-------- 206 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCC---eEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCc--------
Confidence 3799999999999875444443333332 56665542 23332 233333333455554421 2222
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhcc-CcHHHHHHHHhhCCccC------cEEEEEeeCChhHH
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKV------QVGVFSATMPPEAL 184 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~~~------~~i~~saT~~~~~~ 184 (369)
+.|+ ++.+.... ..++|+|++|=+-++-+. +.-..+.++.+-+.+.. .++.+-||...+..
T Consensus 207 ---AaVa---fDAi~~Ak------ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 207 ---AAVA---FDAIQAAK------ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred ---HHHH---HHHHHHHH------HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 1111 11222211 233689999999887543 34455555555554432 34445889887766
Q ss_pred HHHHHh
Q 017573 185 EITRKF 190 (369)
Q Consensus 185 ~~~~~~ 190 (369)
...+.+
T Consensus 275 ~QAk~F 280 (340)
T COG0552 275 SQAKIF 280 (340)
T ss_pred HHHHHH
Confidence 555444
No 425
>PRK07004 replicative DNA helicase; Provisional
Probab=95.19 E-value=0.23 Score=45.55 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=56.6
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 108 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~ 108 (369)
+..|.-+++.|.||+|||..++-.+.+..... +.++++++. .--..|+..++-.... ++....+ .|.....++.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~ 284 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWP 284 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHH
Confidence 33456689999999999987766555443321 115666653 2333444444422111 1111111 1222222222
Q ss_pred H------HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 109 R------ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 109 ~------~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
. .+ .+..+.|. |+..+....++-......+++||+|=.+.+.
T Consensus 285 ~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 285 KLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 1 12 23456653 4444433332211111236899999999875
No 426
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.15 E-value=0.24 Score=46.38 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=70.1
Q ss_pred HHHHHHhccCCCeEEEeCCH----hhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCC
Q 017573 226 LCDLYETLAITQSVIFVNTR----RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGID 300 (369)
Q Consensus 226 l~~~~~~~~~~k~lv~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d 300 (369)
+..+..-.++.++.+.+|+. .+...+.+.|...+..+.++.|.+....|.++++...+|+++++|+|. .+.+.++
T Consensus 302 laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~ 381 (677)
T COG1200 302 LAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE 381 (677)
T ss_pred HHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee
Confidence 33333333556888999985 566677888888899999999999999999999999999999999998 5566789
Q ss_pred CCCCcEEEEec
Q 017573 301 VQQVSLVINYD 311 (369)
Q Consensus 301 ~~~~~~vi~~~ 311 (369)
+.++-.||+-.
T Consensus 382 F~~LgLVIiDE 392 (677)
T COG1200 382 FHNLGLVIIDE 392 (677)
T ss_pred ecceeEEEEec
Confidence 88888888654
No 427
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.15 E-value=0.028 Score=50.51 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=30.4
Q ss_pred CcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhcc
Q 017573 19 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYG 61 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~ 61 (369)
+.+.|.+.+..+.+. .-+++.||||||||.+. ..++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCC
Confidence 377888888777765 45799999999999774 4555555443
No 428
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.11 E-value=0.19 Score=44.99 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.||+|+|||..+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 478999999999999775
No 429
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.09 E-value=0.082 Score=43.41 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=29.3
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCCH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTR 74 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~~ 74 (369)
.++-+.+.+|+|+|||..++..+...+..+ ....+++++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 356789999999999988776665554332 0113788887654
No 430
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.02 E-value=0.03 Score=48.67 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=26.5
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
..+++++|+|+||||||... -+++..+.... +++.+=-+
T Consensus 158 ~~~~nili~G~tgSGKTTll-~aL~~~ip~~~---ri~tiEd~ 196 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT-NAALREIPAIE---RLITVEDA 196 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH-HHHHhhCCCCC---eEEEecCC
Confidence 35799999999999999663 55555554432 55554333
No 431
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.096 Score=39.54 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=57.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHc-
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ- 112 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 112 (369)
-.+.+.+++|+|||..+ .-+.+.+....-+ -.=+++|- .++-....|+++..+..+........-..
T Consensus 6 mki~ITG~PGvGKtTl~-~ki~e~L~~~g~k-vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 6 MKIFITGRPGVGKTTLV-LKIAEKLREKGYK-VGGFITPE----------VREGGKRIGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred eEEEEeCCCCccHHHHH-HHHHHHHHhcCce-eeeEEeee----------eecCCeEeeeEEEEccCCceEEEEEcCCCC
Confidence 46899999999999765 4555555543222 34455663 44444555777666654332110000000
Q ss_pred cCCcEEEeccHHHH----HHHHcCCCCCCCccEEEEechhHhh--ccCcHHHHHHHHh
Q 017573 113 AGVHVVVGTPGRVF----DMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQ 164 (369)
Q Consensus 113 ~~~~iiv~t~~~l~----~~~~~~~~~~~~~~~viiDE~H~~~--~~~~~~~~~~~~~ 164 (369)
....=+....+.+. ..+++.. ..-|++|+||+--+. ...|.+.+..+++
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~---~~aDvIIIDEIGpMElks~~f~~~ve~vl~ 128 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRAL---EEADVIIIDEIGPMELKSKKFREAVEEVLK 128 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHh---hcCCEEEEecccchhhccHHHHHHHHHHhc
Confidence 01112222223332 2222211 114899999998764 3335555555443
No 432
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.14 Score=48.61 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=24.1
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEee
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 178 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 178 (369)
..+++|+||+|.+.... ...+.+.+...+....+|+ .+|
T Consensus 121 ~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL-~tt 159 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFIL-ATT 159 (614)
T ss_pred CcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEE-EeC
Confidence 46899999999985432 3445555555555454444 444
No 433
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.96 E-value=0.34 Score=44.24 Aligned_cols=114 Identities=17% Similarity=0.027 Sum_probs=57.1
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHH-
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ- 108 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~- 108 (369)
..|.-++|.|+||+|||..++-.+.+..... +.++++++.- .-..+..+++-..... +....+ .+.....++.
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE-m~~~~i~~R~~~~~~~--v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE-MSAEQLAMRMLSSESR--VDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHhccCCCCHHHHHH
Confidence 3456689999999999988776666544321 1267777643 3334444444332221 111111 1222222221
Q ss_pred -----HHHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 109 -----RILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 109 -----~~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
..+. +..+.|. |.+.+...+++.... .++++||+|=.+.+.
T Consensus 268 ~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 268 LTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 1122 2334542 344554433322111 237999999998875
No 434
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.93 E-value=0.41 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGI 54 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~ 54 (369)
..+.++.||+|+|||..+-..+
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 3589999999999998764443
No 435
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.91 E-value=0.31 Score=42.74 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=25.7
Q ss_pred hhhhhhhccc---cCCcEEEEcCCCChhhHHHHHHHHHhhhc
Q 017573 22 IQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDY 60 (369)
Q Consensus 22 ~Q~~~~~~~~---~~~~~li~~~tG~GKT~~~~~~~~~~~~~ 60 (369)
.-.++++.+. +|++.+|.||.|+|||..+. .+++.+..
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~-~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQ-QIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 3344555554 57999999999999997653 34444443
No 436
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.12 Score=46.75 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccEEEEechhHhhccC-------cHHHHHHHHh---hCCccCcEEEEEeeCChhHH
Q 017573 139 IKMFVLDEADEMLSRG-------FKDQIYDIFQ---LLPAKVQVGVFSATMPPEAL 184 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~-------~~~~~~~~~~---~~~~~~~~i~~saT~~~~~~ 184 (369)
..+|.|||.+.+...- ..+.++.++. .+.++.-+|.+.||--++..
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 4789999999875321 1233444443 34556678999999765543
No 437
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.88 E-value=0.073 Score=43.68 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=37.4
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.+.-+++.+++|+|||..++..+.+.+..+. +++|++... -..+..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~---~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGE---KAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECCC-CHHHHHHHHHHc
Confidence 3567899999999999887766666665543 788887654 456666666655
No 438
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.85 E-value=0.13 Score=45.72 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=30.3
Q ss_pred CHHHHHHHHhCCCCC--CcHhhh-h----hhhccccCCcEEEEcCCCChhhHHHHH
Q 017573 4 QENLLRGIYAYGFEK--PSAIQQ-R----GIVPFCKGLDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 4 ~~~i~~~l~~~~~~~--~~~~Q~-~----~~~~~~~~~~~li~~~tG~GKT~~~~~ 52 (369)
.+|+-=-+...|+.. +.+-|+ . .++.+.++.|++..+|+|+|||-.+..
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 345555566666622 222111 1 114455789999999999999976654
No 439
>PRK05748 replicative DNA helicase; Provisional
Probab=94.84 E-value=0.37 Score=44.19 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=57.4
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQR 109 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~ 109 (369)
..|.-++|.|+||.|||..++-.+.+..... +.++++++.- .-..|+..++-..... +....+ .+.....++..
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSlE-ms~~~l~~R~l~~~~~--v~~~~i~~~~l~~~e~~~ 275 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSLE-MGAESLVMRMLCAEGN--IDAQRLRTGQLTDDDWPK 275 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeCC-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHHHH
Confidence 3456689999999999988776666544321 1156666533 3344554444322111 111111 12222222211
Q ss_pred ------HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 110 ------ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 110 ------~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
.+. +..+.|. |.+.+...+++......++++||+|=.|.+.
T Consensus 276 ~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 276 LTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 122 2345553 3444544333211111147899999999875
No 440
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.82 E-value=0.15 Score=47.34 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 312 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 312 (369)
++++|+.+|.+..+..+++.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|...- -..++++..||+.+.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEECC
Confidence 568999999999999998888764 66889999999999999999999999999999997432 245667888876653
No 441
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.81 E-value=0.015 Score=45.62 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=27.5
Q ss_pred HccCCcEEEeccHHHHHHHHcCC---CCCCCccEEEEechhHhhc
Q 017573 111 LQAGVHVVVGTPGRVFDMLRRQS---LRPDYIKMFVLDEADEMLS 152 (369)
Q Consensus 111 ~~~~~~iiv~t~~~l~~~~~~~~---~~~~~~~~viiDE~H~~~~ 152 (369)
....++|+|+++..++....... +... -.+||+||||.+.+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHH
Confidence 34568999999999876543322 2233 37899999999864
No 442
>PF12846 AAA_10: AAA-like domain
Probab=94.79 E-value=0.044 Score=47.23 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
+.+++|.|+||+|||..+...+...+..+. .++++=|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~---~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP---RVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC---CEEEEcCCch
Confidence 468999999999999887755555555553 6777755533
No 443
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.073 Score=48.69 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
...++.+|-|+|||.++
T Consensus 39 hAYlfsG~RGvGKTt~A 55 (515)
T COG2812 39 HAYLFSGPRGVGKTTIA 55 (515)
T ss_pred hhhhhcCCCCcCchhHH
Confidence 45699999999999876
No 444
>PHA00012 I assembly protein
Probab=94.71 E-value=1.2 Score=38.28 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccC
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGL 62 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~ 62 (369)
-++.|-+|+|||+.+...+...+.++.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr 30 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGC 30 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCC
Confidence 478999999999998888888777663
No 445
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.65 E-value=0.089 Score=54.19 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=64.4
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC-cEE-------EEEECC-c
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKV-------HACVGG-T 102 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~-~~v-------~~~~~~-~ 102 (369)
..++++|.|+.|||||.+...-++..+..+....++++|+-|+.-+.++.+++.+...... ..- ....+. .
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~~~~~ 88 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALEGKRP 88 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCC
Confidence 3688999999999999988777777776554445899999999999888887766543210 000 000000 0
Q ss_pred ch---H----HHHHHHccCCcEEEeccHHHHHHHHc
Q 017573 103 SV---R----EDQRILQAGVHVVVGTPGRVFDMLRR 131 (369)
Q Consensus 103 ~~---~----~~~~~~~~~~~iiv~t~~~l~~~~~~ 131 (369)
.. . ...+.+.+...+-|.|.+.|...+.+
T Consensus 89 ~~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r 124 (1141)
T TIGR02784 89 DAAKLAEARRLFARALETPGGLKIQTIHAFCESLLH 124 (1141)
T ss_pred ChHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHH
Confidence 00 0 11133445567889999999765544
No 446
>PRK08760 replicative DNA helicase; Provisional
Probab=94.64 E-value=0.29 Score=45.06 Aligned_cols=114 Identities=15% Similarity=0.072 Sum_probs=57.9
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHH--
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR-- 109 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 109 (369)
.|.-++|.|.||.|||..++-.+.+...... .+++|++.- .-..|+..++........... ...+.....++..
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~~~ 303 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSME-MSASQLAMRLISSNGRINAQR-LRTGALEDEDWARVT 303 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEecc-CCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHHHH
Confidence 3456799999999999887766655543311 156666543 334455555544322211111 1112222222211
Q ss_pred ----HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 110 ----ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 110 ----~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
.+. +..+.|. |++.+....++... ...+++||||=.+.+.
T Consensus 304 ~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 304 GAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 122 2345544 34555443333211 1337999999999774
No 447
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.62 E-value=0.067 Score=49.40 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=39.1
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
.+...+|.+++|+|||..++..+.+.+.+ +. +++|++-- +-..++.+++..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEe-cCHHHHHHHHHHcC
Confidence 35778999999999998887777765554 44 78888854 55566666666653
No 448
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.62 E-value=0.23 Score=46.14 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.+|+|+|||..+
T Consensus 88 ~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999775
No 449
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.56 E-value=0.58 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++.++|+.|.|||..+
T Consensus 62 ~~GlYl~G~vG~GKT~Lm 79 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM 79 (362)
T ss_pred CceEEEECCCCCchhHHH
Confidence 578999999999999754
No 450
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.50 E-value=0.27 Score=47.16 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=70.3
Q ss_pred chhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC
Q 017573 218 KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 294 (369)
Q Consensus 218 ~~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 294 (369)
+.+.|.+...+++... .++.+|+.+|.+.....+.+.|+.. +.++..+|+++++.+|...+.+..+|+.+|+|+|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 3344555555544432 3468999999999888887777655 789999999999999999999999999999999975
Q ss_pred CcCCCCCCCCcEEEEe
Q 017573 295 LARGIDVQQVSLVINY 310 (369)
Q Consensus 295 ~~~G~d~~~~~~vi~~ 310 (369)
+ .=..++++..||+.
T Consensus 306 A-lF~Pf~~LGLIIvD 320 (730)
T COG1198 306 A-LFLPFKNLGLIIVD 320 (730)
T ss_pred h-hcCchhhccEEEEe
Confidence 3 23456677777754
No 451
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.48 E-value=0.38 Score=48.04 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=64.8
Q ss_pred ccCCCeEEEeCCHhhH----HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCCCCCCcEE
Q 017573 233 LAITQSVIFVNTRRKV----DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLV 307 (369)
Q Consensus 233 ~~~~k~lv~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~v 307 (369)
..++.+.|.+|+.=-| +.+.+.++...+++..++.-.+.++...+++...+|.++|+|+|- .++.++-+.++-.+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 3556889999996544 556666666688999999999999999999999999999999997 78888888888888
Q ss_pred EEe
Q 017573 308 INY 310 (369)
Q Consensus 308 i~~ 310 (369)
|+-
T Consensus 721 IID 723 (1139)
T COG1197 721 IID 723 (1139)
T ss_pred EEe
Confidence 753
No 452
>PRK09087 hypothetical protein; Validated
Probab=94.47 E-value=0.16 Score=41.58 Aligned_cols=38 Identities=3% Similarity=0.037 Sum_probs=23.4
Q ss_pred cEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 140 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 140 ~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
+++++|++|.+. .....+..+++.+......+.+|++.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCC
Confidence 489999999763 22456777776665533334445553
No 453
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.45 E-value=0.051 Score=51.01 Aligned_cols=67 Identities=19% Similarity=-0.018 Sum_probs=51.9
Q ss_pred CcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCCHHHHHHHHHHHH
Q 017573 19 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
+-.-|+.|+......+-.++++|+|+|||++.+.++-..+... ....+++++|-+..-+.|.-..+.
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 4456999999888899999999999999998877766665443 112279999999888888766554
No 454
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.91 Score=39.35 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
..+++++.+|+|+|||..+
T Consensus 126 p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred CCccceecCCCCchHHHHH
Confidence 4588999999999999876
No 455
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=0.48 Score=40.16 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 137 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 137 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
...+++|+|++|.+.... ...+.+++..-|+...++++|..+.
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~~ 136 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKPQ 136 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCChh
Confidence 346899999999986433 5566666666666666666665543
No 456
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.44 E-value=0.19 Score=36.43 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=32.9
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE-----cCCHHHHHHHHHHHHHh
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL-----APTRELAQQIEKVMRAL 87 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv-----~P~~~l~~q~~~~~~~~ 87 (369)
-+.|+||+|||.++-+.+-+....+....-+... .|....+.+-.++++++
T Consensus 57 SfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 4899999999999877766666665544333222 35556665555555554
No 457
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.41 E-value=0.048 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
++.++|.||.|+|||.. +..+...+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 47789999999999975 33444444
No 458
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.39 E-value=0.22 Score=50.34 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=32.4
Q ss_pred cEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 140 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 140 ~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
-++|+|++|.+.+......+..+....+++..+++.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 58999999998656556678888888888888888777643
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.39 E-value=0.023 Score=44.10 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=19.4
Q ss_pred CccEEEEechhHhh--ccCcHHHHHHHHhhCCccCcEEE
Q 017573 138 YIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGV 174 (369)
Q Consensus 138 ~~~~viiDE~H~~~--~~~~~~~~~~~~~~~~~~~~~i~ 174 (369)
.-+++|+||+=.+. ...|.+.+..+++ +...+++
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~ 130 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIG 130 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEE
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEE
Confidence 35899999998774 4456666666666 3444554
No 460
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.25 Score=43.98 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.1
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~ 53 (369)
...+++||+|+|||..+...
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36889999999999776443
No 461
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.35 E-value=0.35 Score=48.21 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=64.2
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCCCCCCcEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 308 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 308 (369)
.+.++++.+|+...|...++.+++. +.++..+++..+..++.++++.+.+|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3468999999999998887776653 56788999999999999999999999999999998 444557778888887
Q ss_pred Eec
Q 017573 309 NYD 311 (369)
Q Consensus 309 ~~~ 311 (369)
+-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 654
No 462
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.32 E-value=1 Score=40.02 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=71.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC--HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT--RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~--~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
++.++=-|||||+++.-.+...... +.++++|+.- |.-+. ++++.+....+..+.....+.. +.+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~---~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~-Pv~------ 169 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKK---GKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKD-PVE------ 169 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHc---CCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCC-HHH------
Confidence 7888999999998875555443332 2377777642 23332 3344443334555544311111 111
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHh
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 190 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~ 190 (369)
..-+. ...... ..+|++|+|=+-++. +...-.++..+...+.+.--++.+-|+...+.......|
T Consensus 170 ------Iak~a-l~~ak~-----~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF 235 (451)
T COG0541 170 ------IAKAA-LEKAKE-----EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAF 235 (451)
T ss_pred ------HHHHH-HHHHHH-----cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHH
Confidence 00111 122222 236889999887654 444557777777788777767777887776655554443
No 463
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.25 E-value=0.24 Score=48.56 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.||+|+|||..+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999775
No 464
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.24 E-value=0.052 Score=46.00 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=28.2
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
..++++++.|+||||||..+ .+++..+... ..+++.+-...+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E 166 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPE 166 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccc
Confidence 34689999999999999765 5556565554 125666555444
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.24 E-value=0.091 Score=41.67 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCcHhhhhhhhccc-cCCcEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 18 KPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~-~~~~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
.+.+.|.+.+.... .++.+++.+|||+|||..+ -+++..+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~ 50 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIP 50 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcC
Confidence 45666777776655 4688999999999999754 34444443
No 466
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.22 E-value=0.22 Score=46.10 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH----HHhccccCcEEEEEECCcchHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM----RALGDYLGVKVHACVGGTSVREDQ 108 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~ 108 (369)
.+..+...|-.-|||.... +++..+...-.+-++.|++..+-..+-..+++ ++|.+... +....+
T Consensus 202 QkaTVFLVPRRHGKTWf~V-piIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~--vi~~k~-------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTWFII-PIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH--TIENKD-------- 270 (668)
T ss_pred ccceEEEecccCCceehHH-HHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc--eeeecC--------
Confidence 4667888999999997643 44444444444558999999887666655544 44433211 111111
Q ss_pred HHHccCCcEEEecc-----HHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEEEEeeCC
Q 017573 109 RILQAGVHVVVGTP-----GRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMP 180 (369)
Q Consensus 109 ~~~~~~~~iiv~t~-----~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~ 180 (369)
..|.+.-| -.+......+....+.++++++||+|-+. ...+..++-.+. +++++|++|.|-.
T Consensus 271 ------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 271 ------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred ------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCC
Confidence 11222211 11123344456677789999999999763 234444544443 4677899888853
No 467
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.22 E-value=0.081 Score=44.50 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHhCCCCCCcHhhhhhhhcccc--CCcEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 10 GIYAYGFEKPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 10 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
.|.+.|+ .+.|.+.+..+.. +..+++.+|||||||..+ .+++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 3555553 5567777766554 346899999999999764 34444443
No 468
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.041 Score=46.28 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
..|+++.+|||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3679999999999998763
No 469
>PHA00350 putative assembly protein
Probab=94.13 E-value=0.61 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEcCCCChhhHHHHH-HHHHhhhcc
Q 017573 36 VIQQAQSGTGKTATFCS-GILQQLDYG 61 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~-~~~~~~~~~ 61 (369)
.++.|.+|||||..++- .++.++.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999988775 466666555
No 470
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.18 Score=41.46 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
.+.+++.+|+|+|||+++ +...+... -++|-+-.++|++..
T Consensus 211 pkgvllygppgtgktl~a------ravanrtd-acfirvigselvqky 251 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCA------RAVANRTD-ACFIRVIGSELVQKY 251 (435)
T ss_pred CCceEEeCCCCCchhHHH------HHHhcccC-ceEEeehhHHHHHHH
Confidence 589999999999999986 22222222 466666666776543
No 471
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.05 E-value=0.049 Score=51.40 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=50.2
Q ss_pred HHHHHhcCCCcEEEEecCCcCCCCCCCCcEE--------EEecCCCCccchhhhhcccccCCCc-eeEEEEe
Q 017573 277 IMREFRSGSSRVLITTDLLARGIDVQQVSLV--------INYDLPTQPENYLHRIGRSGRFGRK-GVAINFV 339 (369)
Q Consensus 277 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v--------i~~~~~~~~~~~~Q~~GR~~R~~~~-~~~~~~~ 339 (369)
--+.|.+|+..|-|-+.+.+.|+.+...+.| |.+.+|||....+|.+||..|.++- +.-|+|.
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 4467889999999999999999998765444 5688999999999999999998764 3344443
No 472
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.27 Score=42.74 Aligned_cols=130 Identities=13% Similarity=0.162 Sum_probs=71.1
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH--HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR--ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~--~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
+.+.+=.|+|||.+..-.++.+-.++. ++.++|.-. +=+ .++++......++.+...+ +..+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~---K~~LvcaDTFRagA---fDQLkqnA~k~~iP~ygsy--te~dp------- 168 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGY---KVALVCADTFRAGA---FDQLKQNATKARVPFYGSY--TEADP------- 168 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCC---ceeEEeecccccch---HHHHHHHhHhhCCeeEecc--cccch-------
Confidence 688999999999887666655544444 777777542 222 2233332222234433311 11110
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh-ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHh
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 190 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~-~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~ 190 (369)
+.|+ ..-+.+ +..++|++||+|-.-+.. +.+..+++..+.+.+.+..-++.+-|+...........+
T Consensus 169 ---v~ia-----~egv~~--fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 169 ---VKIA-----SEGVDR--FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred ---HHHH-----HHHHHH--HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 0011 011111 233457999999776653 233456667777777777767778888776655544433
No 473
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.99 E-value=0.14 Score=44.15 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=31.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
.-+.|.+|+|+|||..++..+.+....+. +++|+..-.++..+
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~---~v~yId~E~~~~~~ 98 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGG---TAAFIDAEHALDPV 98 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEcccchhHHH
Confidence 55789999999999888777666655433 78888665554443
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.97 E-value=0.016 Score=36.13 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+...++.+++|+|||...
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999754
No 475
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.96 E-value=0.52 Score=44.79 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.0
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..|+.+-+.||+|+|||..+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~ 372 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI 372 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 446788889999999998654
No 476
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.89 Score=40.61 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=42.4
Q ss_pred ccEEEEechhHhhccC-------c-HHHHHHHHhh----CCccCcEEEEEeeCChh-HHHHHHHhcCCCEEEEecCcccc
Q 017573 139 IKMFVLDEADEMLSRG-------F-KDQIYDIFQL----LPAKVQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDELT 205 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~-------~-~~~~~~~~~~----~~~~~~~i~~saT~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 205 (369)
..++.+||+|.+...- . ......+... ..+..+++.++||-.+. ..+-+.+-+.
T Consensus 246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~------------- 312 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV------------- 312 (428)
T ss_pred CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh-------------
Confidence 5788899999876321 1 1111111111 12345788889997553 3333333222
Q ss_pred ccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 206 LEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
...++..+........+..++...
T Consensus 313 ----kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 313 ----KRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred ----ceeeecCCCHHHHHHHHHHHHHhC
Confidence 233455566666777777777765
No 477
>PRK09165 replicative DNA helicase; Provisional
Probab=93.94 E-value=0.56 Score=43.49 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=57.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccC------------CCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEEC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGL------------VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 100 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~------------~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 100 (369)
|.-++|.|.||.|||..++-.+.+...... .+.+++|++. ..-..|+..++-.......... ...+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~-i~~~ 294 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSK-IRRG 294 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHH-HhcC
Confidence 455799999999999877665555443210 1235666653 3444555555533322211111 1112
Q ss_pred CcchHHHHHHHc-----cCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 101 GTSVREDQRILQ-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 101 ~~~~~~~~~~~~-----~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
.....++..... ....+.|- |.+.+....++... ...+++||||=.|.+.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 222222221111 12345543 34455444433211 2347999999999775
No 478
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.43 Score=47.31 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=40.3
Q ss_pred EeccHHHHHHHHcCCCCCCCccEEEEechhHhhc----------cCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHH
Q 017573 119 VGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS----------RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEIT 187 (369)
Q Consensus 119 v~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~----------~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~ 187 (369)
|+..+.=+.++.... ......++.+||++-+.- .+....+..++..++...|++.++||..++..+-.
T Consensus 345 vgEaERqlrllFeeA-~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpa 422 (1080)
T KOG0732|consen 345 VGEAERQLRLLFEEA-QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPA 422 (1080)
T ss_pred cCcHHHHHHHHHHHH-hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchh
Confidence 344444344443322 222357899999994321 11224455566677889999999999887665433
No 479
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.89 E-value=0.092 Score=42.86 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
+.-+.+.+++|+|||..++..+.+....+. +++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~---~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGK---KVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEE
Confidence 455899999999999888777666554433 788874
No 480
>PRK05595 replicative DNA helicase; Provisional
Probab=93.83 E-value=0.73 Score=42.19 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=56.5
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVRED 107 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~ 107 (369)
+..|.-++|.|.||.|||..++-.+.+.. ..+. +++++..- .-..|+..++-.... ++....+ .+.....++
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~---~vl~fSlE-ms~~~l~~R~~a~~~--~v~~~~~~~~~l~~~e~ 271 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALREGK---SVAIFSLE-MSKEQLAYKLLCSEA--NVDMLRLRTGNLEDKDW 271 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCC---cEEEEecC-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHH
Confidence 33456678999999999987766655433 3332 67777653 233444444332211 1211111 122222222
Q ss_pred HHHHc-----cCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 108 QRILQ-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 108 ~~~~~-----~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
..... ....+.|- |.+.+....++... ..++++||+|=.|.+.
T Consensus 272 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~ 324 (444)
T PRK05595 272 ENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhcc
Confidence 11110 12234443 33444333333211 1337999999999875
No 481
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.82 E-value=0.15 Score=43.99 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=32.3
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
.-+.+.+|+|+|||..++..+.+....+. +++|+.+-.++-.+
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~---~~vyId~E~~~~~~ 98 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGG---TVAFIDAEHALDPV 98 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC---CEEEECccccHHHH
Confidence 45789999999999888777766655433 88998876665544
No 482
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.80 E-value=0.2 Score=39.94 Aligned_cols=62 Identities=19% Similarity=0.097 Sum_probs=37.9
Q ss_pred hhhccc-cCCcEEEEcCCCChhhHHHHHHHHHhhhcc-------CCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 26 GIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 26 ~~~~~~-~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-------~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
++.-+. .|.-.++.||+|+|||..++-.+.+..... ..+.+++++..-.. ..++.+.+....
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 334444 567799999999999988766666555311 12347888876544 556667776654
No 483
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.80 E-value=0.099 Score=41.92 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=22.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
-+++.+|||||||... ..++..+..... .+++.+-.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~-~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKT-HHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCC-cEEEEEcC
Confidence 4789999999999774 344444443222 24454443
No 484
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.80 E-value=0.26 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~ 55 (369)
..+.++.||+|+|||.++-..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHH
Confidence 36899999999999987644433
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.79 E-value=0.057 Score=45.44 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=22.3
Q ss_pred hhhhhccccCCcEEEEcCCCChhhHHHHH
Q 017573 24 QRGIVPFCKGLDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 24 ~~~~~~~~~~~~~li~~~tG~GKT~~~~~ 52 (369)
++++..+..++++++.||+|+|||..+..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 34444555689999999999999987643
No 486
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.13 Score=52.68 Aligned_cols=56 Identities=30% Similarity=0.391 Sum_probs=45.9
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhcc--CCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
.+++++|.|..|||||.+...-+++.+..+ -.-..+|+|+.|++-+..+..++.+-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 468999999999999999888888887764 23347999999999888888877653
No 487
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.63 Score=43.35 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
..+.+++.||+|+|||+.+-
T Consensus 275 ~~~giLl~GpPGtGKT~lAk 294 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAK 294 (494)
T ss_pred CCCeeEEECCCCCCHHHHHH
Confidence 34689999999999998763
No 488
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.52 Score=40.94 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=23.8
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++|+||+|.+.... ...+.+.+...|+...+++.|
T Consensus 93 ~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 46899999999885433 345555555555455455444
No 489
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.69 E-value=0.11 Score=42.73 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
|.-+.+.+++|+|||..++..+.+.+..+. +++|+.--
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~---~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGK---KVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEECC
Confidence 456799999999999887777666655433 78887654
No 490
>PRK10436 hypothetical protein; Provisional
Probab=93.68 E-value=0.095 Score=47.74 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=27.6
Q ss_pred CcHhhhhhhhcccc--CCcEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 19 PSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~--~~~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
+.+.|.+.+..+.. +.-+++.+|||||||... .+++..+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 35566667766553 466899999999999875 34454543
No 491
>PRK05636 replicative DNA helicase; Provisional
Probab=93.67 E-value=0.75 Score=42.65 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=53.7
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQRI 110 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~ 110 (369)
.|.-+++.|.||.|||..++-.+.+..... +.++++++. .--..|+..++-.... ++....+ .+.....++.++
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSl-EMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~ 338 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSL-EMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKL 338 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEe-eCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHH
Confidence 345578999999999987765554433222 125666643 2223333333322111 1111111 122222222211
Q ss_pred H-----ccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 111 L-----QAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 111 ~-----~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
. ..+..+.|- |.+.+....++... ...+++||||=.|.+.
T Consensus 339 ~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 339 VQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 1 112345553 33344333332111 1237999999999875
No 492
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.65 E-value=0.43 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~ 55 (369)
.+.++.||+|+|||..+-..+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5899999999999987643333
No 493
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.58 E-value=0.47 Score=47.27 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.3
Q ss_pred CcEEEEcCCCChhhHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~ 52 (369)
.+.++.||+|+|||.++-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 6889999999999977643
No 494
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.57 E-value=1.9 Score=41.74 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=33.3
Q ss_pred hCCCCCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHH
Q 017573 13 AYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~ 55 (369)
.|+| +||+.|......++ ...+.++..|||+|||++.+-..+
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 4676 78999988777665 458899999999999987654444
No 495
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.56 E-value=0.18 Score=42.15 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=26.5
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhh-hc--cCCCccEEEEcCCHH
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQL-DY--GLVQCQALVLAPTRE 75 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~-~~--~~~~~~~liv~P~~~ 75 (369)
=.=+++|.|+|||-.++..++... .. +..+.+++|+.-...
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~ 83 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGT 83 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSS
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCC
Confidence 356899999999966655444433 22 233447999875543
No 496
>PRK06321 replicative DNA helicase; Provisional
Probab=93.53 E-value=1.5 Score=40.39 Aligned_cols=113 Identities=17% Similarity=0.073 Sum_probs=56.6
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEE-ECCcchHHHHH-
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQR- 109 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~- 109 (369)
.|.-++|.|.||.|||..++-.+.+..... +.++++++. .--..|+..++-.... ++....+ .+.....++.+
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~--g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~~~ 299 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQN--RLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVGDLSGRDFQRI 299 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcCCCCHHHHHHH
Confidence 346678999999999987766544433221 125666653 2334444444432211 2221111 12222223321
Q ss_pred -----HHccCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 110 -----ILQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 110 -----~~~~~~~iiv~-----t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
.+. +..+.|- |.+.+....++-.. ...+++||||=.+.+.
T Consensus 300 ~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 300 VSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 122 2345554 44455443333211 2347899999999875
No 497
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.51 E-value=0.82 Score=37.90 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=25.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhh---------ccCCCccEEEEc
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLD---------YGLVQCQALVLA 71 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~---------~~~~~~~~liv~ 71 (369)
-.++.||.|+|||..++..++.... ....+.+++|+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 4689999999999887766554321 111233788888
No 498
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.84 Score=38.89 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCCH-----------HHHHHHHHHHHHhccccCcEEEEE
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTR-----------ELAQQIEKVMRALGDYLGVKVHAC 98 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~~-----------~l~~q~~~~~~~~~~~~~~~v~~~ 98 (369)
++-++++||+|+|||.. +-++++.+.-. ......+|=..+- -|+.++.+.+.++...-+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46689999999999954 44555554211 1111234434333 345555555555555555556555
Q ss_pred EC
Q 017573 99 VG 100 (369)
Q Consensus 99 ~~ 100 (369)
..
T Consensus 256 ID 257 (423)
T KOG0744|consen 256 ID 257 (423)
T ss_pred eH
Confidence 53
No 499
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.32 E-value=0.045 Score=56.24 Aligned_cols=93 Identities=26% Similarity=0.404 Sum_probs=75.8
Q ss_pred CeEEEeCCHhhHHHHHHHHhhCCC-eeEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCC
Q 017573 237 QSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD-----------QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 304 (369)
Q Consensus 237 k~lv~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 304 (369)
..++|++....+....+.+...+. .+..+.|.+. ...+.+++..|.....++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 458999999999998888876632 3333444321 2235778888888999999999999999999999
Q ss_pred cEEEEecCCCCccchhhhhcccccC
Q 017573 305 SLVINYDLPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 305 ~~vi~~~~~~~~~~~~Q~~GR~~R~ 329 (369)
+.++.++.+.....|+|..||+.+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999765
No 500
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.28 E-value=1.7 Score=37.33 Aligned_cols=65 Identities=17% Similarity=0.379 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCc-cCcEEEEEeeCChhHHHHHH
Q 017573 124 RVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA-KVQVGVFSATMPPEALEITR 188 (369)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~i~~saT~~~~~~~~~~ 188 (369)
.++..+..+....+.--++|+||++-+.......-+.++++...+ ..++..+.-|-.-+..+..+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LE 188 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLE 188 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHH
Confidence 344444544333333346889999988766555555565555432 23344444444334444433
Done!