Query 017573
Match_columns 369
No_of_seqs 159 out of 1534
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 16:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0s_A ATP-dependent RNA helic 100.0 1.3E-61 4.4E-66 435.5 38.5 369 1-369 42-410 (410)
2 2db3_A ATP-dependent RNA helic 100.0 9.5E-61 3.3E-65 430.4 42.8 366 1-368 61-434 (434)
3 3eiq_A Eukaryotic initiation f 100.0 2.4E-60 8.1E-65 428.0 36.6 369 1-369 45-414 (414)
4 1s2m_A Putative ATP-dependent 100.0 1.6E-58 5.4E-63 414.1 41.6 365 1-367 26-390 (400)
5 2i4i_A ATP-dependent RNA helic 100.0 9.9E-59 3.4E-63 417.8 39.0 367 1-368 20-409 (417)
6 1xti_A Probable ATP-dependent 100.0 7E-58 2.4E-62 408.9 41.0 364 1-365 13-381 (391)
7 1fuu_A Yeast initiation factor 100.0 4.8E-60 1.7E-64 423.3 21.7 368 1-369 26-393 (394)
8 3pey_A ATP-dependent RNA helic 100.0 9E-57 3.1E-61 402.3 39.6 358 1-362 10-378 (395)
9 3fht_A ATP-dependent RNA helic 100.0 3E-56 1E-60 401.1 38.3 361 1-364 30-402 (412)
10 1hv8_A Putative ATP-dependent 100.0 1.1E-55 3.9E-60 391.3 40.4 354 1-362 11-365 (367)
11 2z0m_A 337AA long hypothetical 100.0 6.9E-54 2.4E-58 375.4 36.2 335 3-355 1-335 (337)
12 3fmp_B ATP-dependent RNA helic 100.0 1.2E-55 4.1E-60 403.6 20.2 361 1-364 97-469 (479)
13 3fho_A ATP-dependent RNA helic 100.0 5.5E-55 1.9E-59 400.1 24.5 359 2-364 125-493 (508)
14 3sqw_A ATP-dependent RNA helic 100.0 3.6E-53 1.2E-57 394.9 36.4 358 2-359 27-415 (579)
15 3i5x_A ATP-dependent RNA helic 100.0 1.8E-52 6.2E-57 390.2 36.8 358 2-359 78-466 (563)
16 2v1x_A ATP-dependent DNA helic 100.0 3.6E-51 1.2E-55 377.9 31.7 337 1-350 26-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.9E-50 6.7E-55 369.7 30.7 335 1-352 7-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 9.2E-49 3.1E-53 351.8 26.7 326 6-355 9-376 (414)
19 2zj8_A DNA helicase, putative 100.0 6.8E-47 2.3E-51 361.0 28.8 348 1-364 6-407 (720)
20 2ykg_A Probable ATP-dependent 100.0 1.1E-47 3.7E-52 366.9 22.5 354 7-362 2-540 (696)
21 2va8_A SSO2462, SKI2-type heli 100.0 4.7E-46 1.6E-50 355.5 33.3 347 1-363 13-428 (715)
22 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-47 7.6E-52 356.3 22.4 333 14-348 3-514 (556)
23 1wp9_A ATP-dependent RNA helic 100.0 1.1E-45 3.6E-50 339.9 31.6 325 18-347 9-480 (494)
24 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-46 3.9E-51 358.5 25.1 327 3-344 10-390 (702)
25 3tbk_A RIG-I helicase domain; 100.0 4.4E-46 1.5E-50 347.5 27.8 332 17-350 3-515 (555)
26 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-45 3.8E-50 355.8 27.2 333 13-347 243-754 (797)
27 3l9o_A ATP-dependent RNA helic 100.0 2E-45 7E-50 359.9 28.3 325 3-343 169-598 (1108)
28 2xgj_A ATP-dependent RNA helic 100.0 7.3E-44 2.5E-48 346.1 36.1 323 11-350 80-508 (1010)
29 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-44 6.1E-49 350.8 27.6 333 13-347 243-754 (936)
30 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-43 5.6E-48 346.3 27.1 322 12-355 73-503 (1104)
31 4gl2_A Interferon-induced heli 100.0 9E-44 3.1E-48 340.0 20.3 323 17-342 6-519 (699)
32 4a4z_A Antiviral helicase SKI2 100.0 1.9E-42 6.5E-47 336.2 28.3 321 13-350 35-502 (997)
33 2eyq_A TRCF, transcription-rep 100.0 6.8E-42 2.3E-46 337.0 32.4 321 2-342 587-922 (1151)
34 1gm5_A RECG; helicase, replica 100.0 2.8E-43 9.7E-48 331.8 21.5 325 5-350 356-705 (780)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 5.2E-43 1.8E-47 343.1 21.4 321 12-356 52-468 (1054)
36 2oca_A DAR protein, ATP-depend 100.0 1.2E-42 4E-47 320.3 21.5 311 17-340 112-453 (510)
37 4f92_B U5 small nuclear ribonu 100.0 2.9E-41 1E-45 341.3 31.2 340 5-350 913-1316(1724)
38 4f92_B U5 small nuclear ribonu 100.0 1E-41 3.5E-46 344.7 21.5 341 3-350 66-481 (1724)
39 2fwr_A DNA repair protein RAD2 100.0 3E-41 1E-45 308.0 22.3 296 18-345 93-457 (472)
40 1tf5_A Preprotein translocase 100.0 4.1E-40 1.4E-44 304.7 29.1 322 13-344 79-547 (844)
41 2whx_A Serine protease/ntpase/ 100.0 2.6E-40 9.1E-45 306.4 14.5 319 3-362 157-501 (618)
42 3h1t_A Type I site-specific re 100.0 1.3E-39 4.5E-44 304.6 18.7 300 17-331 177-545 (590)
43 2fsf_A Preprotein translocase 100.0 1.1E-37 3.9E-42 287.7 27.8 322 14-345 71-586 (853)
44 1nkt_A Preprotein translocase 100.0 5.5E-37 1.9E-41 283.5 31.5 324 13-346 107-621 (922)
45 3dmq_A RNA polymerase-associat 100.0 6.3E-39 2.2E-43 312.2 19.0 333 17-354 152-625 (968)
46 1z63_A Helicase of the SNF2/RA 100.0 1.1E-37 3.9E-42 286.4 26.3 311 17-343 36-454 (500)
47 2jlq_A Serine protease subunit 100.0 1.7E-38 5.8E-43 286.3 19.1 287 15-341 1-310 (451)
48 2wv9_A Flavivirin protease NS2 100.0 1.1E-38 3.8E-43 297.3 16.6 300 18-356 215-550 (673)
49 1yks_A Genome polyprotein [con 100.0 1.3E-39 4.4E-44 292.2 7.5 295 29-362 4-322 (440)
50 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-37 3.8E-42 295.9 20.9 328 1-344 77-445 (773)
51 3o8b_A HCV NS3 protease/helica 100.0 8.4E-38 2.9E-42 286.9 14.6 292 18-359 217-535 (666)
52 2v6i_A RNA helicase; membrane, 100.0 1.8E-36 6.3E-41 271.2 20.4 270 32-340 1-289 (431)
53 1vec_A ATP-dependent RNA helic 100.0 2.2E-35 7.6E-40 239.2 24.3 197 1-197 8-205 (206)
54 1z3i_X Similar to RAD54-like; 100.0 5E-35 1.7E-39 274.4 30.2 319 18-343 55-529 (644)
55 3mwy_W Chromo domain-containin 100.0 7.5E-36 2.6E-40 286.7 24.6 330 17-354 235-698 (800)
56 2z83_A Helicase/nucleoside tri 100.0 4.5E-37 1.5E-41 277.4 15.2 273 27-342 15-313 (459)
57 3fe2_A Probable ATP-dependent 100.0 1.9E-35 6.5E-40 245.3 23.4 202 1-202 34-240 (242)
58 3ber_A Probable ATP-dependent 100.0 6.9E-35 2.4E-39 242.3 24.4 199 1-199 48-247 (249)
59 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-35 6.6E-40 241.6 20.4 201 1-201 9-213 (219)
60 1qde_A EIF4A, translation init 100.0 5.5E-35 1.9E-39 240.0 21.6 201 1-202 19-219 (224)
61 3bor_A Human initiation factor 100.0 5.7E-35 1.9E-39 241.5 20.8 199 1-199 35-234 (237)
62 3rc3_A ATP-dependent RNA helic 100.0 1.6E-34 5.4E-39 268.5 25.6 290 29-358 151-460 (677)
63 3iuy_A Probable ATP-dependent 100.0 1.3E-34 4.6E-39 238.2 21.8 197 1-198 25-227 (228)
64 2oxc_A Probable ATP-dependent 100.0 1.7E-34 5.9E-39 237.6 22.2 197 1-198 29-227 (230)
65 2gxq_A Heat resistant RNA depe 100.0 3.9E-34 1.3E-38 232.1 23.7 197 1-199 6-205 (207)
66 1wrb_A DJVLGB; RNA helicase, D 100.0 9.5E-35 3.2E-39 242.9 20.4 210 1-210 28-250 (253)
67 1t6n_A Probable ATP-dependent 100.0 3.7E-34 1.3E-38 234.3 22.7 198 1-198 19-219 (220)
68 2pl3_A Probable ATP-dependent 100.0 1.5E-33 5.1E-38 233.3 23.6 199 1-200 30-233 (236)
69 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.1E-33 3.7E-38 273.4 24.3 311 18-340 271-707 (1038)
70 3ly5_A ATP-dependent RNA helic 100.0 2.3E-33 7.7E-38 235.0 21.7 192 3-194 61-257 (262)
71 3fmo_B ATP-dependent RNA helic 100.0 3.5E-33 1.2E-37 237.9 21.0 197 1-200 97-298 (300)
72 3jux_A Protein translocase sub 100.0 1.9E-31 6.5E-36 241.7 32.0 319 14-345 72-590 (822)
73 3dkp_A Probable ATP-dependent 100.0 1.5E-32 5E-37 228.6 19.1 202 1-202 34-243 (245)
74 1fuk_A Eukaryotic initiation f 100.0 2.1E-28 7.1E-33 190.2 20.1 162 208-369 3-164 (165)
75 2ipc_A Preprotein translocase 100.0 6.5E-27 2.2E-31 216.1 29.9 131 13-151 75-215 (997)
76 2hjv_A ATP-dependent RNA helic 100.0 3E-27 1E-31 183.1 19.7 158 204-362 5-162 (163)
77 2rb4_A ATP-dependent RNA helic 100.0 2.1E-27 7.1E-32 186.4 18.1 160 205-364 4-169 (175)
78 1c4o_A DNA nucleotide excision 100.0 5.8E-27 2E-31 219.5 24.1 117 234-351 438-559 (664)
79 1t5i_A C_terminal domain of A 100.0 3E-27 1E-31 184.5 17.2 160 206-366 3-163 (172)
80 2p6n_A ATP-dependent RNA helic 100.0 1.8E-27 6.1E-32 188.6 15.9 178 189-368 10-188 (191)
81 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.3E-27 8E-32 187.2 16.1 165 203-368 14-179 (185)
82 2d7d_A Uvrabc system protein B 99.9 5.5E-25 1.9E-29 206.0 30.7 116 234-350 444-564 (661)
83 3eaq_A Heat resistant RNA depe 99.9 1.1E-25 3.8E-30 181.8 17.6 144 219-362 15-158 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.2E-24 4.2E-29 183.5 18.6 153 209-362 3-155 (300)
85 3b6e_A Interferon-induced heli 99.9 9.5E-26 3.2E-30 184.0 10.2 164 14-178 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.9 5E-27 1.7E-31 183.2 0.0 154 209-362 4-157 (170)
87 2vl7_A XPD; helicase, unknown 99.9 2.3E-24 7.9E-29 198.1 17.0 103 234-342 383-521 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 2.1E-21 7E-26 179.3 29.2 310 18-343 3-532 (551)
89 1rif_A DAR protein, DNA helica 99.9 6.2E-24 2.1E-28 180.0 9.3 154 18-183 113-266 (282)
90 4a15_A XPD helicase, ATP-depen 99.9 1.6E-20 5.5E-25 174.4 23.5 316 17-342 2-584 (620)
91 2fz4_A DNA repair protein RAD2 99.9 2.7E-21 9.3E-26 158.7 15.0 139 17-182 92-231 (237)
92 3llm_A ATP-dependent RNA helic 99.9 6.9E-21 2.4E-25 156.6 14.5 160 15-183 58-222 (235)
93 1z5z_A Helicase of the SNF2/RA 99.8 5.9E-19 2E-23 147.2 13.0 125 219-343 94-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4E-09 1.4E-13 98.2 9.9 160 6-178 136-298 (608)
95 4b3f_X DNA-binding protein smu 98.7 1.2E-08 4.1E-13 96.0 7.3 68 17-87 188-256 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.7 9.7E-08 3.3E-12 88.0 12.2 128 17-178 188-315 (574)
97 2gk6_A Regulator of nonsense t 98.7 1.9E-07 6.3E-12 87.4 13.0 70 16-87 178-247 (624)
98 2xzl_A ATP-dependent helicase 98.6 2.8E-07 9.4E-12 88.2 13.5 69 17-87 359-427 (802)
99 3upu_A ATP-dependent DNA helic 98.6 1.6E-07 5.3E-12 84.8 10.8 71 12-84 19-94 (459)
100 2wjy_A Regulator of nonsense t 98.6 4.6E-07 1.6E-11 86.6 12.6 69 17-87 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.5 3.7E-05 1.2E-09 72.7 23.8 70 17-88 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 98.2 1.9E-05 6.5E-10 66.1 13.1 124 219-347 107-242 (328)
103 2o0j_A Terminase, DNA packagin 97.9 4.7E-05 1.6E-09 66.1 8.4 71 18-89 163-233 (385)
104 3cpe_A Terminase, DNA packagin 97.8 0.00022 7.7E-09 66.2 12.0 73 18-91 163-235 (592)
105 3ec2_A DNA replication protein 97.7 0.00017 5.7E-09 55.9 8.3 32 20-51 16-56 (180)
106 3vkw_A Replicase large subunit 97.7 0.00021 7.1E-09 62.8 9.5 108 34-178 162-269 (446)
107 1uaa_A REP helicase, protein ( 97.6 8.7E-05 3E-09 70.3 7.5 70 18-89 2-72 (673)
108 2orw_A Thymidine kinase; TMTK, 97.6 0.00012 4E-09 57.0 6.9 39 33-74 3-41 (184)
109 1xx6_A Thymidine kinase; NESG, 97.6 0.00012 4.1E-09 57.0 6.7 39 33-74 8-46 (191)
110 1a5t_A Delta prime, HOLB; zinc 97.6 0.00018 6.1E-09 61.8 8.2 38 19-56 3-47 (334)
111 1l8q_A Chromosomal replication 97.6 0.00056 1.9E-08 58.5 11.1 36 34-72 38-73 (324)
112 2b8t_A Thymidine kinase; deoxy 97.5 0.00028 9.4E-09 56.4 7.7 91 33-151 12-102 (223)
113 2kjq_A DNAA-related protein; s 97.5 8.7E-05 3E-09 55.5 4.4 29 22-51 26-54 (149)
114 1pjr_A PCRA; DNA repair, DNA r 97.5 0.00027 9.3E-09 67.4 8.6 70 17-88 10-80 (724)
115 2j9r_A Thymidine kinase; TK1, 97.4 0.00017 5.7E-09 56.8 5.5 40 33-75 28-67 (214)
116 2orv_A Thymidine kinase; TP4A 97.4 0.00021 7.1E-09 56.8 5.5 39 33-74 19-57 (234)
117 3u4q_A ATP-dependent helicase/ 97.3 0.00044 1.5E-08 69.9 8.5 105 17-129 9-116 (1232)
118 2chg_A Replication factor C sm 97.3 0.0025 8.6E-08 50.8 10.7 38 138-176 102-139 (226)
119 1w4r_A Thymidine kinase; type 97.2 0.00079 2.7E-08 52.0 6.9 38 33-73 20-57 (195)
120 3n70_A Transport activator; si 97.2 0.0017 5.8E-08 48.1 8.0 20 31-50 22-41 (145)
121 3co5_A Putative two-component 97.2 0.0021 7.2E-08 47.5 8.5 20 31-50 25-44 (143)
122 2v1u_A Cell division control p 97.1 0.0021 7.3E-08 56.2 9.9 19 33-51 44-62 (387)
123 3te6_A Regulatory protein SIR3 97.1 0.0032 1.1E-07 53.1 10.3 25 33-58 45-69 (318)
124 1d2n_A N-ethylmaleimide-sensit 97.1 0.004 1.4E-07 51.6 10.9 18 34-51 65-82 (272)
125 3e2i_A Thymidine kinase; Zn-bi 97.1 0.0011 3.7E-08 52.1 6.8 40 33-75 28-67 (219)
126 1g5t_A COB(I)alamin adenosyltr 97.1 0.0038 1.3E-07 48.4 9.6 136 33-185 28-169 (196)
127 2z4s_A Chromosomal replication 97.1 0.0031 1E-07 56.3 10.3 38 34-72 131-168 (440)
128 2zpa_A Uncharacterized protein 97.0 0.0015 5.1E-08 60.5 7.3 113 18-180 175-289 (671)
129 3syl_A Protein CBBX; photosynt 96.9 0.0014 4.7E-08 55.6 6.1 19 33-51 67-85 (309)
130 3bos_A Putative DNA replicatio 96.9 0.0019 6.6E-08 52.3 6.7 19 33-51 52-70 (242)
131 2qby_B CDC6 homolog 3, cell di 96.9 0.0044 1.5E-07 54.2 9.2 19 33-51 45-63 (384)
132 2w58_A DNAI, primosome compone 96.8 0.0048 1.6E-07 48.5 8.3 19 34-52 55-73 (202)
133 1sxj_D Activator 1 41 kDa subu 96.7 0.0044 1.5E-07 53.5 7.7 39 138-177 133-171 (353)
134 3u61_B DNA polymerase accessor 96.7 0.0043 1.5E-07 52.9 7.6 37 138-174 105-141 (324)
135 3kl4_A SRP54, signal recogniti 96.7 0.018 6.2E-07 50.8 11.3 131 34-190 98-234 (433)
136 1fnn_A CDC6P, cell division co 96.5 0.0027 9.2E-08 55.7 5.5 35 35-71 46-80 (389)
137 2p65_A Hypothetical protein PF 96.5 0.0074 2.5E-07 46.5 7.2 21 33-53 43-63 (187)
138 1iqp_A RFCS; clamp loader, ext 96.5 0.0075 2.6E-07 51.4 7.8 38 138-176 110-147 (327)
139 3h4m_A Proteasome-activating n 96.5 0.0068 2.3E-07 50.6 7.4 20 32-51 50-69 (285)
140 3eie_A Vacuolar protein sortin 96.4 0.014 4.9E-07 49.6 9.1 19 33-51 51-69 (322)
141 3dm5_A SRP54, signal recogniti 96.4 0.039 1.3E-06 48.7 11.7 57 34-96 101-159 (443)
142 2qby_A CDC6 homolog 1, cell di 96.3 0.024 8.2E-07 49.4 10.4 19 33-51 45-63 (386)
143 1sxj_E Activator 1 40 kDa subu 96.3 0.017 5.7E-07 49.9 9.0 42 138-180 134-175 (354)
144 2dr3_A UPF0273 protein PH0284; 96.3 0.079 2.7E-06 42.8 12.5 51 31-85 21-71 (247)
145 4b4t_J 26S protease regulatory 96.1 0.01 3.5E-07 51.6 6.6 18 33-50 182-199 (405)
146 3vfd_A Spastin; ATPase, microt 96.1 0.025 8.5E-07 49.6 9.1 19 33-51 148-166 (389)
147 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.018 6.1E-07 49.0 7.9 19 33-51 45-63 (322)
148 3cf0_A Transitional endoplasmi 96.1 0.032 1.1E-06 46.9 9.4 20 32-51 48-67 (301)
149 4b4t_M 26S protease regulatory 96.1 0.011 3.7E-07 52.2 6.5 18 33-50 215-232 (434)
150 1njg_A DNA polymerase III subu 96.0 0.038 1.3E-06 44.5 9.3 17 35-51 47-63 (250)
151 1sxj_B Activator 1 37 kDa subu 96.0 0.017 5.8E-07 49.0 7.3 37 139-176 108-144 (323)
152 3b9p_A CG5977-PA, isoform A; A 95.9 0.023 7.8E-07 47.7 7.9 19 33-51 54-72 (297)
153 2qp9_X Vacuolar protein sortin 95.9 0.04 1.4E-06 47.5 9.5 19 33-51 84-102 (355)
154 4b4t_K 26S protease regulatory 95.9 0.025 8.4E-07 49.8 8.1 18 33-50 206-223 (428)
155 1jr3_A DNA polymerase III subu 95.9 0.018 6E-07 50.1 7.2 36 139-175 120-155 (373)
156 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.1 3.5E-06 42.6 11.5 19 33-51 39-57 (262)
157 2gno_A DNA polymerase III, gam 95.8 0.035 1.2E-06 46.7 8.1 38 138-176 82-119 (305)
158 4b4t_I 26S protease regulatory 95.7 0.024 8.2E-07 49.6 6.9 18 33-50 216-233 (437)
159 4b4t_L 26S protease subunit RP 95.6 0.019 6.3E-07 50.7 6.2 18 33-50 215-232 (437)
160 3hu3_A Transitional endoplasmi 95.6 0.063 2.2E-06 48.4 9.6 42 140-181 299-350 (489)
161 2zan_A Vacuolar protein sortin 95.5 0.077 2.6E-06 47.3 10.0 19 33-51 167-185 (444)
162 2chq_A Replication factor C sm 95.5 0.016 5.6E-07 49.0 5.2 17 35-51 40-56 (319)
163 3pvs_A Replication-associated 95.5 0.01 3.4E-07 52.9 3.9 18 34-51 51-68 (447)
164 1sxj_C Activator 1 40 kDa subu 95.4 0.048 1.6E-06 46.7 8.1 38 138-176 110-147 (340)
165 4b4t_H 26S protease regulatory 95.4 0.035 1.2E-06 49.1 7.0 19 32-50 242-260 (467)
166 2q6t_A DNAB replication FORK h 95.3 0.087 3E-06 47.0 9.5 41 31-73 198-238 (444)
167 3hjh_A Transcription-repair-co 95.3 0.12 4.2E-06 46.3 10.4 76 223-311 371-446 (483)
168 2r6a_A DNAB helicase, replicat 95.3 0.094 3.2E-06 46.9 9.7 42 30-73 200-241 (454)
169 1w5s_A Origin recognition comp 95.3 0.035 1.2E-06 48.9 6.9 18 34-51 51-70 (412)
170 3pfi_A Holliday junction ATP-d 95.2 0.069 2.4E-06 45.6 8.4 18 34-51 56-73 (338)
171 3io5_A Recombination and repai 95.0 0.026 9E-07 47.2 4.7 42 35-77 30-71 (333)
172 1n0w_A DNA repair protein RAD5 94.9 0.22 7.4E-06 40.1 10.1 44 30-73 21-67 (243)
173 2ce7_A Cell division protein F 94.8 0.051 1.8E-06 48.7 6.4 18 33-50 49-66 (476)
174 1gm5_A RECG; helicase, replica 94.5 0.19 6.6E-06 48.0 10.0 80 234-313 416-500 (780)
175 2qgz_A Helicase loader, putati 93.9 0.061 2.1E-06 45.3 4.8 36 33-71 152-188 (308)
176 3cf2_A TER ATPase, transitiona 93.9 0.1 3.6E-06 49.8 6.8 18 33-50 238-255 (806)
177 1ls1_A Signal recognition part 93.9 1.5 5E-05 36.6 13.1 37 32-71 97-133 (295)
178 3cf2_A TER ATPase, transitiona 93.8 0.18 6E-06 48.2 8.0 18 33-50 511-528 (806)
179 3oiy_A Reverse gyrase helicase 93.4 0.43 1.5E-05 42.0 9.7 80 233-312 62-148 (414)
180 3pxi_A Negative regulator of g 93.3 0.18 6.3E-06 48.3 7.5 17 35-51 523-539 (758)
181 2fna_A Conserved hypothetical 93.3 2.8 9.7E-05 35.5 14.6 29 22-51 20-48 (357)
182 2zts_A Putative uncharacterize 93.1 0.085 2.9E-06 42.7 4.2 51 33-86 30-80 (251)
183 3bh0_A DNAB-like replicative h 92.0 0.17 6E-06 42.7 4.8 52 30-85 65-116 (315)
184 2w0m_A SSO2452; RECA, SSPF, un 92.0 0.17 5.9E-06 40.3 4.7 40 30-72 20-59 (235)
185 1qvr_A CLPB protein; coiled co 91.6 0.24 8.2E-06 48.2 5.9 20 33-52 191-210 (854)
186 1w36_B RECB, exodeoxyribonucle 91.5 0.39 1.3E-05 48.6 7.5 55 34-88 17-80 (1180)
187 2r8r_A Sensor protein; KDPD, P 91.5 0.21 7.3E-06 39.5 4.5 28 35-62 8-35 (228)
188 3u4q_B ATP-dependent helicase/ 91.5 0.15 5.1E-06 51.5 4.5 50 36-86 4-53 (1166)
189 2ffh_A Protein (FFH); SRP54, s 91.3 3.5 0.00012 36.3 12.5 36 33-71 98-133 (425)
190 2hjv_A ATP-dependent RNA helic 91.3 2 6.9E-05 31.9 9.7 72 66-147 37-112 (163)
191 1u94_A RECA protein, recombina 91.3 0.22 7.7E-06 42.7 4.8 40 32-74 62-101 (356)
192 2zr9_A Protein RECA, recombina 91.2 0.22 7.4E-06 42.7 4.6 39 33-74 61-99 (349)
193 2oap_1 GSPE-2, type II secreti 91.0 0.18 6.3E-06 45.6 4.2 37 21-58 247-284 (511)
194 2z43_A DNA repair and recombin 91.0 0.31 1.1E-05 41.3 5.4 54 33-86 107-164 (324)
195 3hws_A ATP-dependent CLP prote 90.9 0.26 8.7E-06 42.6 4.9 20 32-51 50-69 (363)
196 1e9r_A Conjugal transfer prote 90.8 0.27 9.1E-06 43.7 5.0 44 32-78 52-95 (437)
197 3hr8_A Protein RECA; alpha and 90.8 0.2 6.7E-06 43.0 3.9 41 33-76 61-101 (356)
198 1sky_E F1-ATPase, F1-ATP synth 90.7 2.9 9.8E-05 37.2 11.3 27 30-56 148-174 (473)
199 1ofh_A ATP-dependent HSL prote 90.7 0.27 9.3E-06 41.2 4.8 19 33-51 50-68 (310)
200 1fuk_A Eukaryotic initiation f 90.6 2.1 7.2E-05 31.8 9.3 73 65-147 31-107 (165)
201 2r2a_A Uncharacterized protein 90.6 0.24 8.1E-06 38.6 4.0 22 36-57 8-29 (199)
202 2bjv_A PSP operon transcriptio 90.6 0.33 1.1E-05 39.7 5.1 19 32-50 28-46 (265)
203 3bgw_A DNAB-like replicative h 90.4 0.28 9.4E-06 43.7 4.7 40 31-73 195-234 (444)
204 2rb4_A ATP-dependent RNA helic 90.4 1.5 5E-05 33.1 8.3 70 65-144 35-108 (175)
205 3b85_A Phosphate starvation-in 90.4 0.22 7.5E-06 39.1 3.7 32 19-50 8-39 (208)
206 2v1x_A ATP-dependent DNA helic 90.4 1.2 4E-05 41.3 9.0 122 235-356 84-224 (591)
207 2qmh_A HPR kinase/phosphorylas 90.3 0.15 5.1E-06 39.5 2.6 20 32-51 33-52 (205)
208 1tue_A Replication protein E1; 90.3 0.15 5.1E-06 39.7 2.5 17 34-50 59-75 (212)
209 1jbk_A CLPB protein; beta barr 90.3 0.2 6.7E-06 38.4 3.3 19 33-51 43-61 (195)
210 2p6n_A ATP-dependent RNA helic 90.1 4.1 0.00014 31.2 10.8 71 66-146 56-130 (191)
211 1xp8_A RECA protein, recombina 90.1 0.31 1.1E-05 42.0 4.6 40 33-75 74-113 (366)
212 2eyq_A TRCF, transcription-rep 90.1 1.5 5.2E-05 44.1 10.1 78 234-311 651-733 (1151)
213 3ber_A Probable ATP-dependent 90.0 2.2 7.7E-05 34.3 9.6 75 234-312 110-195 (249)
214 4ag6_A VIRB4 ATPase, type IV s 90.0 0.39 1.3E-05 41.9 5.3 41 32-75 34-74 (392)
215 2cvh_A DNA repair and recombin 90.0 0.32 1.1E-05 38.4 4.4 38 30-73 17-54 (220)
216 1t6n_A Probable ATP-dependent 90.0 0.91 3.1E-05 35.7 7.1 74 236-312 83-167 (220)
217 2i1q_A DNA repair and recombin 89.8 0.41 1.4E-05 40.5 5.2 54 33-86 98-165 (322)
218 4a1f_A DNAB helicase, replicat 89.8 0.35 1.2E-05 41.1 4.7 52 29-84 42-93 (338)
219 3vaa_A Shikimate kinase, SK; s 89.8 0.21 7.1E-06 38.9 3.1 21 31-51 23-43 (199)
220 2l82_A Designed protein OR32; 89.8 2.3 7.8E-05 28.5 7.5 112 239-355 6-126 (162)
221 4ddu_A Reverse gyrase; topoiso 89.7 0.98 3.3E-05 45.2 8.4 79 234-312 120-205 (1104)
222 2qor_A Guanylate kinase; phosp 89.5 0.25 8.5E-06 38.6 3.4 22 29-50 8-29 (204)
223 3iij_A Coilin-interacting nucl 89.4 0.27 9.2E-06 37.5 3.4 21 31-51 9-29 (180)
224 3eaq_A Heat resistant RNA depe 89.3 2.6 9.1E-05 32.9 9.3 69 66-144 33-105 (212)
225 2r44_A Uncharacterized protein 89.1 0.19 6.3E-06 42.8 2.5 24 28-51 41-64 (331)
226 3t15_A Ribulose bisphosphate c 89.0 0.24 8.2E-06 41.3 3.1 19 33-51 36-54 (293)
227 3trf_A Shikimate kinase, SK; a 89.0 0.26 8.9E-06 37.7 3.1 19 33-51 5-23 (185)
228 1p9r_A General secretion pathw 89.0 0.44 1.5E-05 41.9 4.8 47 21-70 153-201 (418)
229 3a8t_A Adenylate isopentenyltr 88.7 0.22 7.7E-06 42.1 2.6 19 34-52 41-59 (339)
230 1qhx_A CPT, protein (chloramph 88.7 0.21 7.2E-06 37.9 2.4 18 33-50 3-20 (178)
231 3nbx_X ATPase RAVA; AAA+ ATPas 88.6 0.4 1.4E-05 43.3 4.4 27 24-50 32-58 (500)
232 2ehv_A Hypothetical protein PH 88.5 0.49 1.7E-05 38.1 4.6 26 29-54 26-51 (251)
233 2eyu_A Twitching motility prot 88.5 0.24 8.3E-06 40.5 2.7 21 30-50 22-42 (261)
234 2ewv_A Twitching motility prot 88.4 0.36 1.2E-05 41.8 3.8 29 30-59 133-161 (372)
235 3lw7_A Adenylate kinase relate 88.4 0.21 7.2E-06 37.7 2.2 17 35-51 3-19 (179)
236 2px0_A Flagellar biosynthesis 88.3 0.52 1.8E-05 39.3 4.7 37 32-71 104-141 (296)
237 1v5w_A DMC1, meiotic recombina 88.3 0.47 1.6E-05 40.6 4.5 42 33-74 122-166 (343)
238 1kgd_A CASK, peripheral plasma 88.2 0.33 1.1E-05 37.0 3.1 19 32-50 4-22 (180)
239 3jvv_A Twitching mobility prot 88.1 0.38 1.3E-05 41.3 3.7 28 32-60 122-149 (356)
240 3i5x_A ATP-dependent RNA helic 87.9 6.2 0.00021 36.1 12.1 100 41-147 316-419 (563)
241 1zp6_A Hypothetical protein AT 87.9 0.26 9E-06 37.9 2.5 21 30-50 6-26 (191)
242 1oyw_A RECQ helicase, ATP-depe 87.8 1.4 4.8E-05 40.1 7.6 121 235-355 65-197 (523)
243 3tau_A Guanylate kinase, GMP k 87.7 0.35 1.2E-05 37.9 3.1 19 32-50 7-25 (208)
244 2ius_A DNA translocase FTSK; n 87.6 0.77 2.6E-05 41.4 5.5 28 31-58 165-192 (512)
245 2jgn_A DBX, DDX3, ATP-dependen 87.6 1.9 6.5E-05 32.9 7.2 88 43-144 29-120 (185)
246 1cr0_A DNA primase/helicase; R 87.5 0.65 2.2E-05 38.7 4.9 42 29-72 31-72 (296)
247 1nlf_A Regulatory protein REPA 87.5 1 3.6E-05 37.0 6.1 46 28-74 25-78 (279)
248 1u0j_A DNA replication protein 87.5 0.35 1.2E-05 39.4 3.0 17 35-51 106-122 (267)
249 1lv7_A FTSH; alpha/beta domain 87.4 0.33 1.1E-05 39.5 2.9 18 33-50 45-62 (257)
250 1lvg_A Guanylate kinase, GMP k 87.3 0.39 1.3E-05 37.3 3.1 19 32-50 3-21 (198)
251 1q57_A DNA primase/helicase; d 87.3 0.49 1.7E-05 42.9 4.2 52 30-84 239-290 (503)
252 3exa_A TRNA delta(2)-isopenten 87.3 0.34 1.2E-05 40.5 2.9 19 34-52 4-22 (322)
253 1y63_A LMAJ004144AAA protein; 87.3 0.39 1.3E-05 36.8 3.1 19 32-50 9-27 (184)
254 3uk6_A RUVB-like 2; hexameric 87.2 0.38 1.3E-05 41.5 3.3 18 34-51 71-88 (368)
255 1kag_A SKI, shikimate kinase I 87.2 0.44 1.5E-05 35.9 3.3 18 33-50 4-21 (173)
256 3foz_A TRNA delta(2)-isopenten 87.0 0.36 1.2E-05 40.3 2.9 18 35-52 12-29 (316)
257 2ze6_A Isopentenyl transferase 87.0 0.36 1.2E-05 39.3 2.9 17 35-51 3-19 (253)
258 4fcw_A Chaperone protein CLPB; 87.0 0.56 1.9E-05 39.3 4.2 18 34-51 48-65 (311)
259 2j41_A Guanylate kinase; GMP, 87.0 0.41 1.4E-05 37.3 3.1 20 31-50 4-23 (207)
260 1ojl_A Transcriptional regulat 86.9 0.56 1.9E-05 39.3 4.1 19 32-50 24-42 (304)
261 1vec_A ATP-dependent RNA helic 86.8 3.5 0.00012 31.8 8.5 117 235-355 71-200 (206)
262 3tr0_A Guanylate kinase, GMP k 86.7 0.43 1.5E-05 37.1 3.1 20 31-50 5-24 (205)
263 2vhj_A Ntpase P4, P4; non- hyd 86.6 0.25 8.7E-06 41.5 1.7 25 32-56 122-146 (331)
264 2gza_A Type IV secretion syste 86.6 0.38 1.3E-05 41.5 2.9 21 30-50 172-192 (361)
265 2l8b_A Protein TRAI, DNA helic 86.5 0.64 2.2E-05 35.3 3.7 58 20-79 36-95 (189)
266 2c9o_A RUVB-like 1; hexameric 86.5 0.43 1.5E-05 42.7 3.3 19 33-51 63-81 (456)
267 3cmu_A Protein RECA, recombina 86.5 0.66 2.2E-05 48.9 5.0 42 32-76 1426-1467(2050)
268 1t5i_A C_terminal domain of A 86.3 3.3 0.00011 31.1 7.8 72 66-147 33-108 (172)
269 3sqw_A ATP-dependent RNA helic 86.3 8.9 0.0003 35.3 12.2 97 45-148 269-369 (579)
270 3cm0_A Adenylate kinase; ATP-b 86.2 0.32 1.1E-05 37.2 2.1 19 33-51 4-22 (186)
271 1c9k_A COBU, adenosylcobinamid 86.2 0.5 1.7E-05 36.0 3.0 44 36-86 2-45 (180)
272 3kb2_A SPBC2 prophage-derived 86.1 0.44 1.5E-05 35.8 2.8 17 35-51 3-19 (173)
273 2j37_W Signal recognition part 86.1 4.1 0.00014 36.7 9.4 35 35-72 103-137 (504)
274 3vkg_A Dynein heavy chain, cyt 86.0 1 3.5E-05 49.7 6.3 69 5-75 875-948 (3245)
275 2r62_A Cell division protease 86.0 0.3 1E-05 40.0 1.9 19 33-51 44-62 (268)
276 1um8_A ATP-dependent CLP prote 85.9 0.48 1.6E-05 41.1 3.3 19 33-51 72-90 (376)
277 1vma_A Cell division protein F 85.9 0.76 2.6E-05 38.5 4.3 36 33-71 104-139 (306)
278 1ly1_A Polynucleotide kinase; 85.9 0.47 1.6E-05 36.0 2.9 16 35-50 4-19 (181)
279 1zuh_A Shikimate kinase; alpha 85.8 0.48 1.7E-05 35.5 2.9 18 34-51 8-25 (168)
280 4gp7_A Metallophosphoesterase; 85.8 0.32 1.1E-05 36.8 1.9 21 30-50 6-26 (171)
281 2oxc_A Probable ATP-dependent 85.5 1.4 4.8E-05 35.0 5.7 73 234-311 91-174 (230)
282 3ney_A 55 kDa erythrocyte memb 85.4 0.58 2E-05 36.3 3.1 19 32-50 18-36 (197)
283 3crm_A TRNA delta(2)-isopenten 85.3 0.48 1.7E-05 39.9 2.9 19 34-52 6-24 (323)
284 1kht_A Adenylate kinase; phosp 85.3 0.55 1.9E-05 36.0 3.0 19 33-51 3-21 (192)
285 4akg_A Glutathione S-transfera 85.3 1 3.5E-05 49.1 5.8 45 6-51 893-941 (2695)
286 1zu4_A FTSY; GTPase, signal re 85.2 0.86 2.9E-05 38.5 4.4 36 33-71 105-140 (320)
287 2iut_A DNA translocase FTSK; n 85.2 1.2 4E-05 40.7 5.4 42 32-73 213-255 (574)
288 3d8b_A Fidgetin-like protein 1 85.2 0.57 1.9E-05 40.3 3.3 19 33-51 117-135 (357)
289 3bs4_A Uncharacterized protein 85.1 1.1 3.7E-05 36.5 4.7 51 33-87 21-71 (260)
290 2v54_A DTMP kinase, thymidylat 85.1 0.59 2E-05 36.3 3.2 20 32-51 3-22 (204)
291 3umf_A Adenylate kinase; rossm 85.0 0.58 2E-05 36.9 3.0 21 31-51 27-47 (217)
292 2pt7_A CAG-ALFA; ATPase, prote 85.0 0.38 1.3E-05 40.9 2.1 19 31-49 169-187 (330)
293 2i4i_A ATP-dependent RNA helic 84.9 5.9 0.0002 34.4 10.0 71 64-144 276-350 (417)
294 2yvu_A Probable adenylyl-sulfa 84.8 1 3.4E-05 34.4 4.3 20 32-51 12-31 (186)
295 2gxq_A Heat resistant RNA depe 84.8 4.4 0.00015 31.2 8.2 74 235-312 72-153 (207)
296 2qt1_A Nicotinamide riboside k 84.8 0.47 1.6E-05 37.0 2.5 25 26-50 14-38 (207)
297 1s96_A Guanylate kinase, GMP k 84.8 0.47 1.6E-05 37.6 2.4 22 29-50 12-33 (219)
298 1knq_A Gluconate kinase; ALFA/ 84.7 0.38 1.3E-05 36.3 1.9 18 33-50 8-25 (175)
299 2c95_A Adenylate kinase 1; tra 84.4 0.6 2E-05 35.9 2.9 21 31-51 7-27 (196)
300 2rhm_A Putative kinase; P-loop 84.4 0.52 1.8E-05 36.2 2.5 19 33-51 5-23 (193)
301 2v3c_C SRP54, signal recogniti 84.4 0.91 3.1E-05 40.1 4.3 36 34-72 100-135 (432)
302 3ice_A Transcription terminati 84.3 1.1 3.7E-05 38.8 4.5 23 29-51 170-192 (422)
303 1ixz_A ATP-dependent metallopr 84.2 0.62 2.1E-05 37.8 3.0 17 34-50 50-66 (254)
304 3d3q_A TRNA delta(2)-isopenten 84.1 0.6 2.1E-05 39.6 2.9 18 35-52 9-26 (340)
305 4eun_A Thermoresistant glucoki 84.0 0.7 2.4E-05 35.9 3.1 19 32-50 28-46 (200)
306 1ex7_A Guanylate kinase; subst 84.0 0.59 2E-05 35.9 2.6 17 34-50 2-18 (186)
307 1z6g_A Guanylate kinase; struc 83.9 0.78 2.7E-05 36.2 3.4 21 30-50 20-40 (218)
308 1via_A Shikimate kinase; struc 83.8 0.73 2.5E-05 34.8 3.1 17 35-51 6-22 (175)
309 3sr0_A Adenylate kinase; phosp 83.6 0.8 2.8E-05 35.8 3.3 16 36-51 3-18 (206)
310 3l0o_A Transcription terminati 83.5 1.2 4E-05 38.5 4.4 29 30-59 172-200 (427)
311 3a00_A Guanylate kinase, GMP k 83.2 0.84 2.9E-05 34.9 3.2 17 34-50 2-18 (186)
312 2cdn_A Adenylate kinase; phosp 83.0 0.83 2.9E-05 35.4 3.2 19 33-51 20-38 (201)
313 3cmu_A Protein RECA, recombina 83.0 1.1 3.9E-05 47.2 4.9 41 30-73 1078-1118(2050)
314 1hqc_A RUVB; extended AAA-ATPa 82.9 0.68 2.3E-05 39.0 2.8 18 34-51 39-56 (324)
315 1gvn_B Zeta; postsegregational 82.8 0.53 1.8E-05 39.1 2.1 18 34-51 34-51 (287)
316 3t61_A Gluconokinase; PSI-biol 82.8 0.76 2.6E-05 35.7 2.9 17 34-50 19-35 (202)
317 1in4_A RUVB, holliday junction 82.8 0.78 2.7E-05 39.0 3.1 17 34-50 52-68 (334)
318 3fb4_A Adenylate kinase; psych 82.8 0.88 3E-05 35.7 3.3 17 35-51 2-18 (216)
319 2x8a_A Nuclear valosin-contain 82.7 0.77 2.6E-05 37.8 3.0 17 34-50 45-61 (274)
320 3fe2_A Probable ATP-dependent 82.6 6.3 0.00021 31.4 8.4 73 235-311 102-184 (242)
321 2wwf_A Thymidilate kinase, put 82.6 0.86 2.9E-05 35.6 3.1 21 31-51 8-28 (212)
322 1aky_A Adenylate kinase; ATP:A 82.6 0.85 2.9E-05 36.0 3.1 19 33-51 4-22 (220)
323 2iyv_A Shikimate kinase, SK; t 82.5 0.95 3.3E-05 34.4 3.3 18 34-51 3-20 (184)
324 1zak_A Adenylate kinase; ATP:A 82.5 0.89 3E-05 35.9 3.2 19 33-51 5-23 (222)
325 2xxa_A Signal recognition part 82.5 1.4 4.7E-05 39.0 4.6 35 34-71 101-136 (433)
326 3dl0_A Adenylate kinase; phosp 82.4 0.76 2.6E-05 36.1 2.8 17 35-51 2-18 (216)
327 3cmw_A Protein RECA, recombina 82.3 1.3 4.3E-05 46.1 4.9 43 30-75 31-73 (1706)
328 3b9q_A Chloroplast SRP recepto 82.3 1.3 4.6E-05 36.9 4.3 37 32-71 99-135 (302)
329 1e6c_A Shikimate kinase; phosp 82.3 0.92 3.1E-05 34.0 3.1 18 34-51 3-20 (173)
330 2plr_A DTMP kinase, probable t 82.3 0.73 2.5E-05 35.9 2.6 19 33-51 4-22 (213)
331 3uie_A Adenylyl-sulfate kinase 82.2 0.75 2.6E-05 35.7 2.6 20 31-50 23-42 (200)
332 1nks_A Adenylate kinase; therm 82.2 0.78 2.7E-05 35.1 2.7 17 35-51 3-19 (194)
333 3eph_A TRNA isopentenyltransfe 82.2 0.73 2.5E-05 40.1 2.7 19 35-53 4-22 (409)
334 3lnc_A Guanylate kinase, GMP k 82.1 0.66 2.3E-05 37.0 2.3 21 30-50 24-44 (231)
335 3tqf_A HPR(Ser) kinase; transf 81.9 0.78 2.7E-05 34.6 2.4 23 32-54 15-37 (181)
336 1rj9_A FTSY, signal recognitio 81.9 1.7 5.8E-05 36.3 4.8 37 32-71 101-137 (304)
337 1tev_A UMP-CMP kinase; ploop, 81.7 0.87 3E-05 34.9 2.9 19 33-51 3-21 (196)
338 1znw_A Guanylate kinase, GMP k 81.7 0.98 3.3E-05 35.3 3.1 22 29-50 16-37 (207)
339 1g8p_A Magnesium-chelatase 38 81.6 0.59 2E-05 39.9 2.0 19 33-51 45-63 (350)
340 1zd8_A GTP:AMP phosphotransfer 81.6 0.88 3E-05 36.1 2.9 18 33-50 7-24 (227)
341 1iy2_A ATP-dependent metallopr 81.5 0.86 2.9E-05 37.5 2.9 17 34-50 74-90 (278)
342 1xjc_A MOBB protein homolog; s 81.5 2 6.8E-05 32.3 4.6 24 35-59 6-29 (169)
343 3i32_A Heat resistant RNA depe 81.4 5.3 0.00018 33.2 7.6 72 66-147 30-105 (300)
344 1qf9_A UMP/CMP kinase, protein 81.4 0.88 3E-05 34.8 2.8 18 34-51 7-24 (194)
345 1pzn_A RAD51, DNA repair and r 81.3 1.2 4.2E-05 38.0 3.9 41 33-73 131-174 (349)
346 3tlx_A Adenylate kinase 2; str 81.3 0.77 2.6E-05 37.0 2.5 20 32-51 28-47 (243)
347 3nwn_A Kinesin-like protein KI 81.2 0.77 2.6E-05 39.3 2.5 23 28-50 98-122 (359)
348 4a74_A DNA repair and recombin 81.2 0.78 2.7E-05 36.3 2.4 24 30-53 22-45 (231)
349 2vli_A Antibiotic resistance p 81.1 0.61 2.1E-05 35.5 1.7 19 33-51 5-23 (183)
350 1ak2_A Adenylate kinase isoenz 80.9 1 3.6E-05 35.9 3.1 19 33-51 16-34 (233)
351 3lda_A DNA repair protein RAD5 80.9 1.8 6E-05 37.8 4.7 41 33-73 178-221 (400)
352 1nn5_A Similar to deoxythymidy 80.7 1 3.6E-05 35.1 3.0 20 32-51 8-27 (215)
353 2bdt_A BH3686; alpha-beta prot 80.6 1 3.5E-05 34.4 2.9 16 35-50 4-19 (189)
354 2bwj_A Adenylate kinase 5; pho 80.6 0.95 3.3E-05 34.9 2.7 19 32-50 11-29 (199)
355 1g41_A Heat shock protein HSLU 80.6 1 3.5E-05 39.8 3.1 18 33-50 50-67 (444)
356 1f9v_A Kinesin-like protein KA 80.5 1.2 4E-05 38.0 3.4 26 26-51 76-103 (347)
357 3f9v_A Minichromosome maintena 80.5 0.92 3.2E-05 42.0 3.0 16 35-50 329-344 (595)
358 3nwj_A ATSK2; P loop, shikimat 80.5 1.1 3.7E-05 36.3 3.0 18 33-50 48-65 (250)
359 1e4v_A Adenylate kinase; trans 80.4 0.94 3.2E-05 35.5 2.6 17 35-51 2-18 (214)
360 2jaq_A Deoxyguanosine kinase; 80.2 1.1 3.6E-05 34.8 2.9 17 35-51 2-18 (205)
361 1j8m_F SRP54, signal recogniti 80.1 1.8 6.1E-05 36.0 4.4 36 33-71 98-133 (297)
362 3bor_A Human initiation factor 80.1 3.7 0.00013 32.7 6.1 75 234-311 97-181 (237)
363 1sxj_A Activator 1 95 kDa subu 80.0 1.1 3.6E-05 40.8 3.2 39 139-179 149-189 (516)
364 3t0q_A AGR253WP; kinesin, alph 80.0 1.2 3.9E-05 38.1 3.2 26 26-51 77-104 (349)
365 2pt5_A Shikimate kinase, SK; a 79.8 1.1 3.9E-05 33.3 2.8 16 35-50 2-17 (168)
366 1m7g_A Adenylylsulfate kinase; 79.7 0.83 2.8E-05 35.8 2.1 29 21-50 14-42 (211)
367 2pl3_A Probable ATP-dependent 79.6 6.2 0.00021 31.2 7.4 73 234-311 96-179 (236)
368 3a4m_A L-seryl-tRNA(SEC) kinas 79.6 0.84 2.9E-05 37.2 2.2 18 34-51 5-22 (260)
369 1ukz_A Uridylate kinase; trans 79.6 1.2 3.9E-05 34.6 2.9 17 34-50 16-32 (203)
370 3be4_A Adenylate kinase; malar 79.5 1.2 4.1E-05 35.1 3.0 18 34-51 6-23 (217)
371 2v9p_A Replication protein E1; 79.4 1.2 4.2E-05 37.2 3.1 20 31-50 124-143 (305)
372 1bg2_A Kinesin; motor protein, 79.4 1 3.5E-05 38.0 2.6 31 20-50 55-95 (325)
373 2pez_A Bifunctional 3'-phospho 79.4 1.1 3.7E-05 34.0 2.6 19 32-50 4-22 (179)
374 1f2t_A RAD50 ABC-ATPase; DNA d 79.3 1.3 4.6E-05 32.4 3.0 17 34-50 24-40 (149)
375 2qe7_A ATP synthase subunit al 79.3 8.9 0.0003 34.3 8.6 53 31-86 160-214 (502)
376 3zq6_A Putative arsenical pump 79.2 2 7E-05 36.2 4.5 35 35-72 16-50 (324)
377 2pbr_A DTMP kinase, thymidylat 79.1 1.2 4.1E-05 34.1 2.9 16 36-51 3-18 (195)
378 2r9v_A ATP synthase subunit al 79.1 7.8 0.00027 34.7 8.2 52 32-86 174-227 (515)
379 3pxg_A Negative regulator of g 79.1 1.3 4.3E-05 39.8 3.3 20 33-52 201-220 (468)
380 2og2_A Putative signal recogni 78.9 2 6.8E-05 36.9 4.3 37 32-71 156-192 (359)
381 2z0h_A DTMP kinase, thymidylat 78.8 1.3 4.3E-05 34.1 2.9 16 36-51 3-18 (197)
382 1xti_A Probable ATP-dependent 78.8 8.5 0.00029 33.0 8.6 74 235-311 76-160 (391)
383 3dc4_A Kinesin-like protein NO 78.7 0.98 3.4E-05 38.4 2.3 32 19-50 71-112 (344)
384 2xb4_A Adenylate kinase; ATP-b 78.6 1.3 4.3E-05 35.1 2.9 17 35-51 2-18 (223)
385 3bfn_A Kinesin-like protein KI 78.5 1.2 4.2E-05 38.4 2.9 32 19-50 75-116 (388)
386 1tf7_A KAIC; homohexamer, hexa 78.5 2.2 7.6E-05 38.8 4.8 42 30-74 278-319 (525)
387 1goj_A Kinesin, kinesin heavy 78.5 1.2 4E-05 38.2 2.7 31 20-50 58-98 (355)
388 2d7d_A Uvrabc system protein B 78.5 16 0.00056 34.2 10.7 75 66-150 447-525 (661)
389 1jjv_A Dephospho-COA kinase; P 78.4 1.3 4.4E-05 34.4 2.9 16 35-50 4-19 (206)
390 3e70_C DPA, signal recognition 78.4 2.1 7.2E-05 36.2 4.3 19 32-50 128-146 (328)
391 3lre_A Kinesin-like protein KI 78.3 1.2 4E-05 38.2 2.7 32 19-50 82-123 (355)
392 3tif_A Uncharacterized ABC tra 78.2 1.1 3.9E-05 35.8 2.5 19 31-49 29-47 (235)
393 3b6u_A Kinesin-like protein KI 78.1 1.1 3.8E-05 38.5 2.5 32 19-50 78-119 (372)
394 1cke_A CK, MSSA, protein (cyti 78.1 1.3 4.5E-05 34.9 2.9 17 34-50 6-22 (227)
395 2vvg_A Kinesin-2; motor protei 78.1 1.2 4E-05 38.0 2.6 32 19-50 66-107 (350)
396 3ug7_A Arsenical pump-driving 78.1 2.4 8.3E-05 36.2 4.6 33 36-71 29-61 (349)
397 1v8k_A Kinesin-like protein KI 78.0 1.1 3.7E-05 39.1 2.4 32 20-51 132-173 (410)
398 1ye8_A Protein THEP1, hypothet 77.9 1.5 5E-05 33.4 2.9 16 35-50 2-17 (178)
399 2y65_A Kinesin, kinesin heavy 77.7 1.2 4.1E-05 38.2 2.6 32 19-50 61-102 (365)
400 2h58_A Kinesin-like protein KI 77.7 1.2 4.2E-05 37.6 2.6 23 28-50 74-98 (330)
401 1t5c_A CENP-E protein, centrom 77.7 1.2 4E-05 38.1 2.5 32 19-50 54-95 (349)
402 3c8u_A Fructokinase; YP_612366 77.6 1.2 4.2E-05 34.7 2.5 19 32-50 21-39 (208)
403 4a14_A Kinesin, kinesin-like p 77.6 1.2 4.2E-05 37.9 2.6 32 19-50 60-101 (344)
404 4etp_A Kinesin-like protein KA 77.5 1.2 4.2E-05 38.8 2.7 25 27-51 133-159 (403)
405 2v6i_A RNA helicase; membrane, 77.5 4.3 0.00015 35.8 6.2 52 66-121 173-224 (431)
406 2woo_A ATPase GET3; tail-ancho 77.5 2.6 8.8E-05 35.7 4.6 34 35-71 21-54 (329)
407 3asz_A Uridine kinase; cytidin 77.4 0.95 3.2E-05 35.4 1.8 19 32-50 5-23 (211)
408 1htw_A HI0065; nucleotide-bind 77.4 1.1 3.7E-05 33.3 2.0 19 31-49 31-49 (158)
409 3gbj_A KIF13B protein; kinesin 77.3 1.2 4.1E-05 38.1 2.5 23 28-50 86-110 (354)
410 2nr8_A Kinesin-like protein KI 77.2 1.2 4.2E-05 38.1 2.5 22 29-50 98-121 (358)
411 2zfi_A Kinesin-like protein KI 77.1 1.3 4.4E-05 38.1 2.6 30 21-50 68-107 (366)
412 1qde_A EIF4A, translation init 77.1 3.1 0.00011 32.6 4.8 74 234-312 81-164 (224)
413 3oaa_A ATP synthase subunit al 77.0 13 0.00045 33.2 9.0 52 32-86 161-214 (513)
414 1wrb_A DJVLGB; RNA helicase, D 76.9 18 0.00061 28.8 9.5 74 235-312 100-183 (253)
415 2i3b_A HCR-ntpase, human cance 76.8 1.9 6.4E-05 33.2 3.2 18 33-50 1-18 (189)
416 2cbz_A Multidrug resistance-as 76.7 1.3 4.5E-05 35.5 2.4 20 30-49 28-47 (237)
417 2if2_A Dephospho-COA kinase; a 76.7 1.5 5E-05 34.0 2.7 16 35-50 3-18 (204)
418 1sgw_A Putative ABC transporte 76.7 1.4 4.9E-05 34.6 2.6 20 30-49 32-51 (214)
419 1x88_A Kinesin-like protein KI 76.6 1.2 4E-05 38.2 2.2 22 29-50 83-106 (359)
420 1ihu_A Arsenical pump-driving 76.5 2.5 8.6E-05 39.1 4.6 36 34-72 9-44 (589)
421 2ck3_A ATP synthase subunit al 76.5 13 0.00045 33.3 8.9 56 31-86 160-222 (510)
422 2p5t_B PEZT; postsegregational 76.5 1 3.4E-05 36.5 1.7 18 33-50 32-49 (253)
423 1yks_A Genome polyprotein [con 76.2 3.8 0.00013 36.3 5.5 67 66-143 179-245 (440)
424 3kta_A Chromosome segregation 76.0 1.7 5.9E-05 32.9 2.9 17 34-50 27-43 (182)
425 1uf9_A TT1252 protein; P-loop, 76.0 1.6 5.4E-05 33.7 2.7 17 34-50 9-25 (203)
426 2rep_A Kinesin-like protein KI 75.9 1.7 5.8E-05 37.4 3.1 23 28-50 109-133 (376)
427 2wbe_C Bipolar kinesin KRP-130 75.9 1.3 4.5E-05 38.1 2.3 31 20-50 78-118 (373)
428 2grj_A Dephospho-COA kinase; T 75.8 1.8 6.1E-05 33.4 2.9 18 34-51 13-30 (192)
429 2heh_A KIF2C protein; kinesin, 75.8 1.3 4.6E-05 38.2 2.4 33 19-51 111-153 (387)
430 3m6a_A ATP-dependent protease 75.7 1.6 5.5E-05 39.9 3.0 19 32-50 107-125 (543)
431 4eaq_A DTMP kinase, thymidylat 75.6 1.6 5.3E-05 34.8 2.6 20 31-50 24-43 (229)
432 3k1j_A LON protease, ATP-depen 75.6 1.7 6E-05 40.3 3.3 21 30-50 57-77 (604)
433 2oca_A DAR protein, ATP-depend 75.6 37 0.0013 30.4 12.1 101 66-176 349-453 (510)
434 3cob_A Kinesin heavy chain-lik 75.4 1.3 4.3E-05 38.1 2.1 23 28-50 73-97 (369)
435 1s2m_A Putative ATP-dependent 75.4 14 0.00047 31.9 8.9 71 65-145 259-333 (400)
436 2bbw_A Adenylate kinase 4, AK4 75.3 1.9 6.3E-05 34.7 3.0 18 33-50 27-44 (246)
437 3u06_A Protein claret segregat 74.9 1.5 5.1E-05 38.3 2.5 23 28-50 132-156 (412)
438 2pze_A Cystic fibrosis transme 74.9 1.5 5.3E-05 34.8 2.4 19 31-49 32-50 (229)
439 3iqw_A Tail-anchored protein t 74.9 3.5 0.00012 35.0 4.7 36 34-72 17-52 (334)
440 2owm_A Nckin3-434, related to 74.8 1.6 5.4E-05 38.6 2.6 30 21-50 115-154 (443)
441 3fht_A ATP-dependent RNA helic 74.8 12 0.0004 32.4 8.3 69 66-144 268-340 (412)
442 3gfo_A Cobalt import ATP-bindi 74.7 1.5 5.2E-05 36.0 2.4 19 31-49 32-50 (275)
443 2ff7_A Alpha-hemolysin translo 74.7 1.6 5.4E-05 35.3 2.4 19 31-49 33-51 (247)
444 3tqc_A Pantothenate kinase; bi 74.7 3.7 0.00013 34.5 4.8 16 35-50 94-109 (321)
445 3iuy_A Probable ATP-dependent 74.6 11 0.00037 29.6 7.4 74 234-311 93-175 (228)
446 4e22_A Cytidylate kinase; P-lo 74.6 2 6.8E-05 34.7 3.1 19 32-50 26-44 (252)
447 1vht_A Dephospho-COA kinase; s 74.6 1.4 4.9E-05 34.5 2.2 17 34-50 5-21 (218)
448 2pcj_A ABC transporter, lipopr 74.5 1.5 5.2E-05 34.7 2.3 19 31-49 28-46 (224)
449 2yhs_A FTSY, cell division pro 74.4 3.1 0.0001 37.3 4.3 35 33-70 293-327 (503)
450 1fx0_A ATP synthase alpha chai 74.4 2.6 9E-05 37.7 3.9 27 32-58 162-188 (507)
451 2ghi_A Transport protein; mult 74.3 1.6 5.6E-05 35.5 2.5 19 31-49 44-62 (260)
452 3ly5_A ATP-dependent RNA helic 74.3 15 0.00053 29.5 8.4 74 234-311 125-209 (262)
453 3fmo_B ATP-dependent RNA helic 74.3 3.4 0.00012 34.4 4.5 70 236-312 163-244 (300)
454 1byi_A Dethiobiotin synthase; 74.1 4.1 0.00014 31.9 4.8 33 37-72 6-38 (224)
455 3cmw_A Protein RECA, recombina 74.0 2.5 8.5E-05 44.1 4.1 45 33-80 1431-1475(1706)
456 1rz3_A Hypothetical protein rb 74.0 3.8 0.00013 31.6 4.5 18 33-50 22-39 (201)
457 3nh6_A ATP-binding cassette SU 73.9 1.3 4.6E-05 36.9 1.9 19 32-50 79-97 (306)
458 3auy_A DNA double-strand break 73.9 1.4 4.8E-05 38.1 2.0 17 34-50 26-42 (371)
459 1yrb_A ATP(GTP)binding protein 73.9 3.8 0.00013 33.1 4.6 34 34-71 15-48 (262)
460 4g1u_C Hemin import ATP-bindin 73.7 1.7 5.8E-05 35.5 2.4 19 31-49 35-53 (266)
461 1svm_A Large T antigen; AAA+ f 73.5 2.2 7.6E-05 36.8 3.2 20 31-50 167-186 (377)
462 1g6h_A High-affinity branched- 73.4 1.8 6E-05 35.2 2.4 19 31-49 31-49 (257)
463 2db3_A ATP-dependent RNA helic 73.3 23 0.00077 31.1 9.8 69 66-144 302-374 (434)
464 2j0s_A ATP-dependent RNA helic 73.3 14 0.00048 32.0 8.5 71 66-146 278-352 (410)
465 3qf7_A RAD50; ABC-ATPase, ATPa 73.3 2.2 7.6E-05 36.7 3.2 16 35-50 25-40 (365)
466 1ji0_A ABC transporter; ATP bi 73.2 1.8 6.2E-05 34.7 2.4 19 31-49 30-48 (240)
467 2dhr_A FTSH; AAA+ protein, hex 73.2 1.9 6.6E-05 38.8 2.8 17 34-50 65-81 (499)
468 3pxi_A Negative regulator of g 73.1 2.1 7.3E-05 41.0 3.3 20 33-52 201-220 (758)
469 1ltq_A Polynucleotide kinase; 73.0 1.6 5.5E-05 36.3 2.2 17 35-51 4-20 (301)
470 2q5c_A NTRC family transcripti 72.9 26 0.00089 26.8 8.9 113 236-359 5-121 (196)
471 1tf7_A KAIC; homohexamer, hexa 72.9 3.4 0.00012 37.6 4.5 24 30-53 36-59 (525)
472 1mv5_A LMRA, multidrug resista 72.8 1.5 5.2E-05 35.2 1.9 19 31-49 26-44 (243)
473 1wp9_A ATP-dependent RNA helic 72.6 19 0.00064 31.8 9.3 96 42-148 340-447 (494)
474 2qi9_C Vitamin B12 import ATP- 72.5 1.9 6.5E-05 34.8 2.4 19 31-49 24-42 (249)
475 1b0u_A Histidine permease; ABC 72.5 1.9 6.5E-05 35.1 2.4 19 31-49 30-48 (262)
476 2f1r_A Molybdopterin-guanine d 72.5 1.4 4.9E-05 33.2 1.6 16 35-50 4-19 (171)
477 1c4o_A DNA nucleotide excision 72.3 29 0.00098 32.6 10.7 74 66-149 441-518 (664)
478 1vpl_A ABC transporter, ATP-bi 72.3 1.9 6.6E-05 34.9 2.4 19 31-49 39-57 (256)
479 3p32_A Probable GTPase RV1496/ 72.0 4.2 0.00014 34.8 4.6 22 34-55 80-101 (355)
480 3kjh_A CO dehydrogenase/acetyl 72.0 3.6 0.00012 32.9 4.1 32 36-70 3-34 (254)
481 2f6r_A COA synthase, bifunctio 72.0 1.7 5.7E-05 35.9 2.0 17 35-51 77-93 (281)
482 1g3q_A MIND ATPase, cell divis 71.9 3.9 0.00013 32.4 4.2 33 37-72 7-39 (237)
483 3qks_A DNA double-strand break 71.9 2.6 8.9E-05 32.7 3.0 17 34-50 24-40 (203)
484 3of5_A Dethiobiotin synthetase 71.9 4 0.00014 32.4 4.1 26 35-60 6-32 (228)
485 2olj_A Amino acid ABC transpor 71.8 2 6.9E-05 35.0 2.4 18 32-49 49-66 (263)
486 1ypw_A Transitional endoplasmi 71.8 2 6.8E-05 41.4 2.7 19 32-50 237-255 (806)
487 2ixe_A Antigen peptide transpo 71.8 2 7E-05 35.2 2.5 19 31-49 43-61 (271)
488 2nq2_C Hypothetical ABC transp 71.7 2 6.8E-05 34.8 2.4 19 31-49 29-47 (253)
489 1hyq_A MIND, cell division inh 71.6 4.6 0.00016 32.6 4.6 32 37-71 7-38 (263)
490 1ry6_A Internal kinesin; kines 71.6 1.9 6.5E-05 36.9 2.3 19 33-51 83-103 (360)
491 1qvr_A CLPB protein; coiled co 71.5 2.9 9.9E-05 40.7 3.8 17 35-51 590-606 (854)
492 2yz2_A Putative ABC transporte 71.5 2.1 7.1E-05 35.0 2.5 19 31-49 31-49 (266)
493 2ph1_A Nucleotide-binding prot 71.4 4.1 0.00014 33.0 4.2 32 37-71 23-54 (262)
494 1uj2_A Uridine-cytidine kinase 71.2 2.5 8.6E-05 34.1 2.9 17 35-51 24-40 (252)
495 1np6_A Molybdopterin-guanine d 71.2 5.5 0.00019 30.0 4.6 24 34-58 7-30 (174)
496 2ihy_A ABC transporter, ATP-bi 71.0 2.1 7.3E-05 35.2 2.4 19 31-49 45-63 (279)
497 2woj_A ATPase GET3; tail-ancho 70.6 4.5 0.00015 34.6 4.4 34 36-72 21-56 (354)
498 4akg_A Glutathione S-transfera 70.4 1.6 5.5E-05 47.7 1.9 19 32-50 1266-1284(2695)
499 4tmk_A Protein (thymidylate ki 70.4 8.9 0.0003 30.0 5.8 27 32-59 2-28 (213)
500 1nij_A Hypothetical protein YJ 70.1 3.7 0.00013 34.5 3.8 16 35-50 6-21 (318)
No 1
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-61 Score=435.45 Aligned_cols=369 Identities=68% Similarity=1.077 Sum_probs=342.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.++|.++||..|+|+|+++++.+.+++++++.+|||+|||++++++++..+.....+.++||++|+++|+.|+
T Consensus 42 ~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 121 (410)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999998876555556999999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
.+.+.++....++.+....++.....+......+++|+|+||+.+...+.........++++|+||+|++.+.++...+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~ 201 (410)
T 2j0s_A 122 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 201 (410)
T ss_dssp HHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHH
Confidence 99999998888899999999888777766666778999999999999999888888889999999999999999999999
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEE
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv 240 (369)
.+...+++..|++++|||++....+....++..+..+...........+.+.+........+...+..++.....+++||
T Consensus 202 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lV 281 (410)
T 2j0s_A 202 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 281 (410)
T ss_dssp HHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEE
Confidence 99999999999999999999888788888888888887777777777888888888877778888999988888889999
Q ss_pred EeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchh
Q 017573 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 320 (369)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~ 320 (369)
||++.+.++.+++.|...+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++...|.
T Consensus 282 f~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 361 (410)
T 2j0s_A 282 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 361 (410)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred EEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhcC
Q 017573 321 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369 (369)
Q Consensus 321 Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
||+||+||.|++|.+++++++.+...++.++++++..++++|.++.++|
T Consensus 362 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 362 HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp HHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred HhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 9999999999999999999999999999999999999999999888765
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-61 Score=430.44 Aligned_cols=366 Identities=32% Similarity=0.511 Sum_probs=329.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC-----CCccEEEEcCCHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VQCQALVLAPTRE 75 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~-----~~~~~liv~P~~~ 75 (369)
++|++.+.++|.++||..|+|+|+++++.+.+++++++++|||+|||++++++++..+.... .++++||++|+++
T Consensus 61 ~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 61 ADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 58999999999999999999999999999999999999999999999999999998875432 2458999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||+++..++.+......+++++|+||||++.+.++
T Consensus 141 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf 220 (434)
T 2db3_A 141 LAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGF 220 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCc
Confidence 99999999999988888889899999887777777778899999999999999998888888999999999999999999
Q ss_pred HHHHHHHHhhC--CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 156 KDQIYDIFQLL--PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 156 ~~~~~~~~~~~--~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
...+..++..+ ++..|++++|||++.....+...++..+..+...........+.+.+..... ..+...+.+++...
T Consensus 221 ~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~ 299 (434)
T 2db3_A 221 SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRSKLIEILSEQ 299 (434)
T ss_dssp HHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc-HHHHHHHHHHHHhC
Confidence 99999998875 5688999999999999999999999988888777666666677777766654 34667777777766
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 313 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 313 (369)
.. ++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 300 ~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p 378 (434)
T 2db3_A 300 AD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMP 378 (434)
T ss_dssp CT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCC
T ss_pred CC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCC
Confidence 54 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEec-cccHHHHHHHHHHhccccccCCcchhhc
Q 017573 314 TQPENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 314 ~~~~~~~Q~~GR~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
.+..+|.||+||+||.|+.|.+++|++ ..+......+.+.++...+++|++|.++
T Consensus 379 ~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 379 SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999 4578888999999999999999998764
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-60 Score=428.01 Aligned_cols=369 Identities=75% Similarity=1.158 Sum_probs=323.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+++++.+.+.|.++|+..|+++|+++++.+.+++++++.+|||+|||+++++++++.+.....+.+++|++|+++|+.|+
T Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 124 (414)
T ss_dssp GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998887665566899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+.+.++....+..+....++........... ..++|+|+||+.+...+.........++++|+||+|++.+.++...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 204 (414)
T 3eiq_A 125 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 204 (414)
T ss_dssp HHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHH
Confidence 99999998888888888888877655544443 67899999999999999988888888999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
..++..+++..+++++|||++.+.......++..+..+...........+.+.+........+...+..++.....+++|
T Consensus 205 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 284 (414)
T 3eiq_A 205 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV 284 (414)
T ss_dssp HHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCE
T ss_pred HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEE
Confidence 99999999999999999999999888889999999888887777788888888888888888999999999988889999
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
|||++++.++.+++.|...+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++...|
T Consensus 285 vf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~ 364 (414)
T 3eiq_A 285 IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 364 (414)
T ss_dssp EECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHH
T ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhcC
Q 017573 320 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
.||+||+||.|++|.+++++++.+...++.+.++++..+++++.++.++|
T Consensus 365 ~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 365 IHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp HHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred hhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 99999999999999999999999999999999999999999999998876
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.6e-58 Score=414.09 Aligned_cols=365 Identities=42% Similarity=0.683 Sum_probs=327.6
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.++|.++||.+|+|+|+++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++|+.|+
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 105 (400)
T 1s2m_A 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998877655556899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
.+.+.++....+..+....++.....+.......++|+|+||+.+...+........+++++|+||+|++.+..+...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~ 185 (400)
T 1s2m_A 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIE 185 (400)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHH
Confidence 99999998888889999888887666655566788999999999999888877778889999999999998888888888
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEE
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv 240 (369)
.+...+++..+++++|||++..........+..+..+..... .....+..++..... ..+...+..++.....+++||
T Consensus 186 ~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~~~~~~lV 263 (400)
T 1s2m_A 186 QILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEE-RQKLHCLNTLFSKLQINQAII 263 (400)
T ss_dssp HHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCG-GGHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEech-hhHHHHHHHHHhhcCCCcEEE
Confidence 999999889999999999998888888888888766554332 334455555554443 457778888888888889999
Q ss_pred EeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchh
Q 017573 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 320 (369)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~ 320 (369)
||++.+.++.+++.|...+..+..+||+++.++|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++...|.
T Consensus 264 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 264 FCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred EEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 321 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 321 Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
|++||+||.|+.|.+++++++.+...++.+++.++..+++++.++.+
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred HhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999999999987754
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.9e-59 Score=417.78 Aligned_cols=367 Identities=35% Similarity=0.519 Sum_probs=323.4
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC------------------
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL------------------ 62 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~------------------ 62 (369)
++|++.+.++|..+||..|+|+|+++++.+.+++++++.+|||+|||++++++++..+....
T Consensus 20 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 20 VEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999988765332
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEE
Q 017573 63 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF 142 (369)
Q Consensus 63 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~v 142 (369)
..++++|++|+++|+.|+.+.+.++....++++..+.|+.........+..+++|+|+||+.|...+.........++++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~i 179 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 179 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEE
Confidence 12479999999999999999999998878889999999888777666667788999999999999998888888889999
Q ss_pred EEechhHhhccCcHHHHHHHHhh--CCc--cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccc
Q 017573 143 VLDEADEMLSRGFKDQIYDIFQL--LPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK 218 (369)
Q Consensus 143 iiDE~H~~~~~~~~~~~~~~~~~--~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (369)
|+||+|++.+.++...+..+... ++. ..+++++|||++.........++..+..+...........+...+.....
T Consensus 180 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (417)
T 2i4i_A 180 VLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 259 (417)
T ss_dssp EESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCG
T ss_pred EEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEecc
Confidence 99999999999889999888874 332 57899999999988888888889888877776666666667766665544
Q ss_pred hhhhHHHHHHHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcC
Q 017573 219 EEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 297 (369)
Q Consensus 219 ~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 297 (369)
..+...+.+++... ..+++||||++++.++.+++.|.+.+..+..+||+++.++|.++++.|++|+.+|||+|+++++
T Consensus 260 -~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 338 (417)
T 2i4i_A 260 -SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338 (417)
T ss_dssp -GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHT
T ss_pred -HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 45677777888766 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhc
Q 017573 298 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 298 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
|+|+|++++||++++|++...|.||+||+||.|+.|.+++++++.+...++.+.+.++....++++++.++
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7e-58 Score=408.87 Aligned_cols=364 Identities=40% Similarity=0.666 Sum_probs=320.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.+.|.++|+.+|+|+|+++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++|+.|+
T Consensus 13 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp GCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999998877655556899999999999999
Q ss_pred HHHHHHhcccc-CcEEEEEECCcchHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHH
Q 017573 81 EKVMRALGDYL-GVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKD 157 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~ 157 (369)
.+.+.++.... ++++..+.|+.........+. ..++|+|+||+.+...+.........++++|+||+|++.+ .++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~ 172 (391)
T 1xti_A 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR 172 (391)
T ss_dssp HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHH
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHH
Confidence 99999987765 788888888887655544443 4579999999999999988888888899999999999976 36677
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcc-ccccceeEEEEEccchhhhHHHHHHHHHhccCC
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (369)
.+..++...++..+++++|||++.........++..+..+...... .....+...+.... ...+...+..++.....+
T Consensus 173 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~ 251 (391)
T 1xti_A 173 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK-DNEKNRKLFDLLDVLEFN 251 (391)
T ss_dssp HHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC-GGGHHHHHHHHHHHSCCS
T ss_pred HHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC-chhHHHHHHHHHHhcCCC
Confidence 8888888888899999999999998888888888888777655433 33445555555544 345778888888888888
Q ss_pred CeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCc
Q 017573 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 316 (369)
Q Consensus 237 k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~ 316 (369)
++||||++.+.++.+++.|...+..+..+||+++.++|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++.
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 331 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 331 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSH
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHhccccccCCcch
Q 017573 317 ENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNV 365 (369)
Q Consensus 317 ~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
..|.|++||+||.|+.|.+++++++. +.+.++.+.+.++..+++++.++
T Consensus 332 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 332 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp HHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred HHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 99999999999999999999999876 55778999999999999988765
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.8e-60 Score=423.31 Aligned_cols=368 Identities=65% Similarity=0.999 Sum_probs=180.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.+.|.++|+.+|+|+|+++++.+.+++++++.+|||+|||++++++++..+.....+++++|++|+++|+.|+
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 105 (394)
T 1fuu_A 26 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 105 (394)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998877665666999999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
.+.+.++....+..+....|+........... +++|+|+||+.+...+........+++++|+||+|.+.+.++...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~ 184 (394)
T 1fuu_A 106 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIY 184 (394)
T ss_dssp HHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHH
Confidence 99999998888889999888887655544433 57999999999999998887778889999999999999888999999
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEE
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv 240 (369)
.+...+++..+++++|||++.........++..+..+...........+...+........+...+..++.....+++||
T Consensus 185 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lV 264 (394)
T 1fuu_A 185 QIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVI 264 (394)
T ss_dssp HHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------
T ss_pred HHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEE
Confidence 99999999999999999999888888888999888887777666666666666666665556777777777777789999
Q ss_pred EeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchh
Q 017573 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 320 (369)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~ 320 (369)
||+++++++.+++.|++.+..+..+||+++.++|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++...|.
T Consensus 265 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~ 344 (394)
T 1fuu_A 265 FCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhhcC
Q 017573 321 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 369 (369)
Q Consensus 321 Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
|++||+||.|++|.+++++++.+...++.++++++..+++++.++.++|
T Consensus 345 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 345 HRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp -------------------------------------------------
T ss_pred HHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 9999999999999999999999999999999999999999998887664
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9e-57 Score=402.31 Aligned_cols=358 Identities=41% Similarity=0.714 Sum_probs=321.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
+||++.+.++|.++|+.+|+|+|.++++.+.++ +++++.+|||+|||++++++++..+.....+++++|++|+++|+.
T Consensus 10 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 89 (395)
T 3pey_A 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELAR 89 (395)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHH
Confidence 689999999999999999999999999999988 999999999999999999999988876656669999999999999
Q ss_pred HHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHH
Q 017573 79 QIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKD 157 (369)
Q Consensus 79 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~ 157 (369)
|+.+.+.++....+..+....++...... ..+++|+|+||+.+...+.+......+++++|+||+|++.+ ..+..
T Consensus 90 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 165 (395)
T 3pey_A 90 QTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 165 (395)
T ss_dssp HHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHH
T ss_pred HHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHH
Confidence 99999999988778888777766542221 34689999999999999988888888899999999999887 66778
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCC
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ 237 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k 237 (369)
.+..+...+++..+++++|||++.........++..+..+...........+...+........+...+..++.....++
T Consensus 166 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (395)
T 3pey_A 166 QCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGS 245 (395)
T ss_dssp HHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSE
T ss_pred HHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCC
Confidence 88888899988999999999999888888889988888887777777777888888888777788888888888888889
Q ss_pred eEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC---
Q 017573 238 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--- 314 (369)
Q Consensus 238 ~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~--- 314 (369)
+||||++++.++.+++.|+..+..+..+||+++.++|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~ 325 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTT
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHhc-cccccCC
Q 017573 315 ---QPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYN-VVIEELP 362 (369)
Q Consensus 315 ---~~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 362 (369)
+...|.|++||+||.|++|.+++++++. +...++.+.+++. ..+.+++
T Consensus 326 ~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred CCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 8999999999999999999999999864 5667788888887 6666665
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3e-56 Score=401.08 Aligned_cols=361 Identities=40% Similarity=0.689 Sum_probs=320.1
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
++|++.+.++|.++|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+.....+++++|++|+++|+.
T Consensus 30 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 109 (412)
T 3fht_A 30 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 109 (412)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHH
Confidence 589999999999999999999999999999987 999999999999999999999988877666668999999999999
Q ss_pred HHHHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhc-cCc
Q 017573 79 QIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGF 155 (369)
Q Consensus 79 q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~-~~~ 155 (369)
|+.+.+.++.... +..+....++...... ....++|+|+||+.+...+.. ......+++++|+||+|++.+ ..+
T Consensus 110 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 186 (412)
T 3fht_A 110 QTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 186 (412)
T ss_dssp HHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTT
T ss_pred HHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCc
Confidence 9999999987654 5667766666553322 134579999999999988865 445567799999999999886 677
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccC
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 235 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (369)
......+...+++..+++++|||++.........++..+..+...........+.+.+........+...+..++.....
T Consensus 187 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (412)
T 3fht_A 187 QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITI 266 (412)
T ss_dssp HHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCC
Confidence 88888888999999999999999999988999999999988888777777888888888888878888999999988888
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC-
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT- 314 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~- 314 (369)
+++||||++.+.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~ 346 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 346 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----CccchhhhhcccccCCCceeEEEEecccc-HHHHHHHHHHhccccccCCcc
Q 017573 315 -----QPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSN 364 (369)
Q Consensus 315 -----~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 364 (369)
+...|.||+||+||.|+.|.+++++++.+ ...++.+++.++..+++++.+
T Consensus 347 ~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 347 KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp SSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred CCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 55799999999999999999999998764 888899999999998887643
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-55 Score=391.33 Aligned_cols=354 Identities=36% Similarity=0.626 Sum_probs=311.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC-CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
++|++.+.+.|+++|+.+|+|+|+++++.+.++ +++++.+|||+|||++++.+++..+... .+.+++|++|+++|+.|
T Consensus 11 ~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQ 89 (367)
T ss_dssp SSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHH
Confidence 589999999999999999999999999999988 7999999999999999999888776553 33489999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
+.+.+.++....+..+....++........... .++|+|+||+.+...+.........++++|+||+|.+.+.++...+
T Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 168 (367)
T 1hv8_A 90 VADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDV 168 (367)
T ss_dssp HHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHH
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHH
Confidence 999999998877888888888887655544443 5799999999999999888777888999999999999998888999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 239 (369)
..+...+++..+++++|||++.........++..+........ ..+...+..... ..+...+..++. ....++|
T Consensus 169 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~~~l~-~~~~~~l 242 (367)
T 1hv8_A 169 EKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE-NERFEALCRLLK-NKEFYGL 242 (367)
T ss_dssp HHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG-GGHHHHHHHHHC-STTCCEE
T ss_pred HHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh-HHHHHHHHHHHh-cCCCcEE
Confidence 9999999889999999999998888888888776655443222 244455554443 446666766665 4557999
Q ss_pred EEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccch
Q 017573 240 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 319 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~ 319 (369)
|||++.+.++.+++.|++.+..+..+||+++.++|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++..+|
T Consensus 243 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 322 (367)
T 1hv8_A 243 VFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 322 (367)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHH
T ss_pred EEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 320 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 320 ~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
.|++||++|.|++|.+++++++.+...++.+.+.++..+++++
T Consensus 323 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 323 MHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred hhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999888764
No 11
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.9e-54 Score=375.44 Aligned_cols=335 Identities=31% Similarity=0.542 Sum_probs=287.9
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
|++.|.+.|+++|+..|+|+|+++++.+.+++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998887763 2389999999999999999
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHH
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 162 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~ 162 (369)
.+.++....+..+....++........... .++|+|+||+.+...+.........++++|+||+|.+.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998877888988888887665544443 4899999999999988887777788999999999999999999999999
Q ss_pred HhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEe
Q 017573 163 FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 242 (369)
Q Consensus 163 ~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~ 242 (369)
+...+...+++++|||++.........++..+..+... .....+...+....... ......+.....+++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99999899999999999998888888888777655332 33344555555444322 2222455556778999999
Q ss_pred CCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhh
Q 017573 243 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 322 (369)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~ 322 (369)
++.++++.+++.|. ++..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++...|.|+
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999999886 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCceeEEEEeccccHHHHHHHHHHhc
Q 017573 323 IGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 323 ~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
+||+||.|++|.+++++. .+...++.+.+.++
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999 88888888877664
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.2e-55 Score=403.58 Aligned_cols=361 Identities=40% Similarity=0.689 Sum_probs=168.5
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
++|++.+.++|.++||..|+++|.++++.+..+ +++++++|||+|||++++++++..+..+...+++||++|+++|+.
T Consensus 97 ~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 176 (479)
T 3fmp_B 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (479)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHH
Confidence 479999999999999999999999999999987 999999999999999999999998887766668999999999999
Q ss_pred HHHHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhc-cCc
Q 017573 79 QIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGF 155 (369)
Q Consensus 79 q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~-~~~ 155 (369)
|+.+.+.++.... ++.+....++...... ....++|+|+||+.+..++.+ ..+...+++++|+||+|++.+ ..+
T Consensus 177 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~ 253 (479)
T 3fmp_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (479)
T ss_dssp HHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTH
T ss_pred HHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCc
Confidence 9999998876643 4566666665543222 133578999999999988865 345567899999999999986 577
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccC
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 235 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (369)
......+...++...|++++|||++.........++..+..+...........+.+.+........+...+..++.....
T Consensus 254 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (479)
T 3fmp_B 254 QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITI 333 (479)
T ss_dssp HHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------
T ss_pred HHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccC
Confidence 78888888889999999999999999888899999999888887777667777777777777666677788888877777
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC-
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT- 314 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~- 314 (369)
+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~ 413 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 413 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----CccchhhhhcccccCCCceeEEEEecccc-HHHHHHHHHHhccccccCCcc
Q 017573 315 -----QPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSN 364 (369)
Q Consensus 315 -----~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 364 (369)
+...|.||+||+||.|+.|.+++++++.+ ...++.+.+.++..+.++..+
T Consensus 414 ~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 414 KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp --------------------------------------------------------
T ss_pred CccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 56799999999999999999999998765 788888999998888776643
No 13
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-55 Score=400.09 Aligned_cols=359 Identities=39% Similarity=0.659 Sum_probs=272.3
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
++++.+.+.+.+.|+..|+++|+++++.+.++ +++++.+|||+|||++++++++..+..+..++++||++|+++|+.|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH
Confidence 57788899999999999999999999999998 9999999999999999999999988777666699999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQ 158 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~~ 158 (369)
+.+.++++....+..+....++..... ...+++|+|+|++.+...+.........+++||+||||++.+ ..+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~ 280 (508)
T 3fho_A 205 IMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQ 280 (508)
T ss_dssp HHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHH
T ss_pred HHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHH
Confidence 999999998766666555444433211 234689999999999999988888888899999999999986 567888
Q ss_pred HHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCe
Q 017573 159 IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~ 238 (369)
+..+...+++..+++++|||++.........+...+..+...........+...+........+...+..++.....+++
T Consensus 281 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 281 SMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp HHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCE
T ss_pred HHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcE
Confidence 88999999999999999999998888888899888888777777777777777777777777788888888888888999
Q ss_pred EEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCC-----
Q 017573 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP----- 313 (369)
Q Consensus 239 lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~----- 313 (369)
||||+++++++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|
T Consensus 361 LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~ 440 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAG 440 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC---
T ss_pred EEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccchhhhhcccccCCCceeEEEEecc-ccHHHHHHHHHHhccccccCCcc
Q 017573 314 -TQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSN 364 (369)
Q Consensus 314 -~~~~~~~Q~~GR~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 364 (369)
.+...|.|++||+||.|+.|.+++++++ .+...++.++++++..+++++.+
T Consensus 441 ~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 441 RPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp --CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 7899999999999999999999999984 56777899999999998887743
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.6e-53 Score=394.93 Aligned_cols=358 Identities=30% Similarity=0.469 Sum_probs=294.6
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccc--cCCcEEEEcCCCChhhHHHHHHHHHhhhccC----CCccEEEEcCCHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTRE 75 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~ 75 (369)
.|++++.++|..+||.+|+|+|.++++.++ +++++++.+|||+|||++++++++..+.... .++++||++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 389999999999999999999999999999 7789999999999999999999998876542 2348999999999
Q ss_pred HHHHHHHHHHHhcc----ccCcEEEEEECCcchHHHHHHH-ccCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEechhH
Q 017573 76 LAQQIEKVMRALGD----YLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADE 149 (369)
Q Consensus 76 l~~q~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~-~~~~~iiv~t~~~l~~~~~~~-~~~~~~~~~viiDE~H~ 149 (369)
|+.|+.+.+.++.. .....+....++.........+ ..+++|+|+||+.+..++... ......++++|+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998753 2245677777777655444333 457899999999998877654 33456689999999999
Q ss_pred hhccCcHHHHHHHHhhCCc-------cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecC----ccccccceeEEEEEccc
Q 017573 150 MLSRGFKDQIYDIFQLLPA-------KVQVGVFSATMPPEALEITRKFMNKPVRILVKR----DELTLEGIKQFYVNVEK 218 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-------~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 218 (369)
+.++++...+..+...++. ..+++++|||+++........++..+..+.... .......+...+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 9999888888877766532 668999999999888888888888776655432 22223344444444443
Q ss_pred hh-hh---HHHHHHHHHh-ccCCCeEEEeCCHhhHHHHHHHHhhC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 017573 219 EE-WK---LETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 290 (369)
Q Consensus 219 ~~-~~---~~~l~~~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 290 (369)
.. .. ...+...+.. ....++||||++++.++.+++.|... +..+..+||+++..+|.++++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 22 22 2233333333 45679999999999999999999876 88999999999999999999999999999999
Q ss_pred EecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 291 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 291 ~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
||+++++|+|+|++++||++++|.+...|.|++||+||.|+.|.+++++.+.+...++.+.+.....+.
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999988776654
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.8e-52 Score=390.24 Aligned_cols=358 Identities=30% Similarity=0.459 Sum_probs=292.8
Q ss_pred CCCHHHHHHHHhCCCCCCcHhhhhhhhccc--cCCcEEEEcCCCChhhHHHHHHHHHhhhccC----CCccEEEEcCCHH
Q 017573 2 GLQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTRE 75 (369)
Q Consensus 2 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~ 75 (369)
.|++.+.+.|..+||.+|+|+|.++++.++ +++++++++|||+|||++++++++..+.... .++++||++|+++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 389999999999999999999999999999 6789999999999999999999998876543 2348999999999
Q ss_pred HHHHHHHHHHHhccc----cCcEEEEEECCcchHHHHHH-HccCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEechhH
Q 017573 76 LAQQIEKVMRALGDY----LGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADE 149 (369)
Q Consensus 76 l~~q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~iiv~t~~~l~~~~~~~-~~~~~~~~~viiDE~H~ 149 (369)
|+.|+.+.+.++... ....+....++......... ...+++|+|+||+.+..++.+. ......++++|+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999986432 24557777777765444333 3457899999999998877654 23456689999999999
Q ss_pred hhccCcHHHHHHHHhhCC-------ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc----cccccceeEEEEEccc
Q 017573 150 MLSRGFKDQIYDIFQLLP-------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD----ELTLEGIKQFYVNVEK 218 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 218 (369)
+.++++...+..+...++ +..|++++|||++.....+...++..+........ ......+...+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999988888887766653 36789999999998888888888887765554321 2223344444444433
Q ss_pred hhhh----HHHHHHHHHh-ccCCCeEEEeCCHhhHHHHHHHHhhC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 017573 219 EEWK----LETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 290 (369)
Q Consensus 219 ~~~~----~~~l~~~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 290 (369)
.... ...+...+.. ....++||||++++.++.+++.|.+. +..+..+||+++..+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2222 2223333332 45679999999999999999999876 88999999999999999999999999999999
Q ss_pred EecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 291 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 291 ~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
||+++++|+|+|++++||++++|.+...|.|++||+||.|+.|.+++++.+.+...++.+.+..+..+.
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999988776554
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.6e-51 Score=377.93 Aligned_cols=337 Identities=16% Similarity=0.212 Sum_probs=269.1
Q ss_pred CCCCHHHHHHHHh-CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+++++.+...|++ ||+..|||+|.++++.+++++++++.+|||+|||++++++++.. .+.+|||+|+++|+.|
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~~q 99 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLMED 99 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHHHH
Confidence 5788999999987 89999999999999999999999999999999999999888752 2389999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHH------HccCCcEEEeccHHHH------HHHHcCCCCCCCccEEEEech
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRI------LQAGVHVVVGTPGRVF------DMLRRQSLRPDYIKMFVLDEA 147 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~iiv~t~~~l~------~~~~~~~~~~~~~~~viiDE~ 147 (369)
+.+.+.++ ++.+..++++......... ....++|+++||+++. ..+.. ......++++|+|||
T Consensus 100 ~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEA 174 (591)
T 2v1x_A 100 QLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEV 174 (591)
T ss_dssp HHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETG
T ss_pred HHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECc
Confidence 99999987 6778888888765544332 2457899999999874 22222 233456899999999
Q ss_pred hHhhccC--cHHHHH---HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEcc-chhh
Q 017573 148 DEMLSRG--FKDQIY---DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVE-KEEW 221 (369)
Q Consensus 148 H~~~~~~--~~~~~~---~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 221 (369)
|.+..++ |...+. .+...+ +..+++++|||+++.....+..++..+....... ....+.+........ ....
T Consensus 175 H~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~ 252 (591)
T 2v1x_A 175 HCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTED 252 (591)
T ss_dssp GGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHHH
T ss_pred ccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHHH
Confidence 9998765 443333 233333 4688999999999887777766665442222211 222333333333222 2234
Q ss_pred hHHHHHHHHHh-ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCC
Q 017573 222 KLETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300 (369)
Q Consensus 222 ~~~~l~~~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 300 (369)
....+.+++.. ...+++||||++++.++.+++.|...+..+..+||+++.++|.++++.|.+|+.+|||+|+++++|+|
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 55666666653 36679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 301 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 301 ~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
+|++++||++++|.|...|.|++||+||.|++|.+++++.+.|...+..+
T Consensus 333 ~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 333 KPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred cccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876655444
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.9e-50 Score=369.71 Aligned_cols=335 Identities=19% Similarity=0.271 Sum_probs=269.0
Q ss_pred CCCCHHHHHHHHh-CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
++|++.+.+.|++ ||+..|+|+|.++++.+.+++++++.+|||+|||++++++++.. . +.++||+|+++|+.|
T Consensus 7 l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~---g~~lvi~P~~aL~~q 80 (523)
T 1oyw_A 7 LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N---GLTVVVSPLISLMKD 80 (523)
T ss_dssp SSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S---SEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C---CCEEEECChHHHHHH
Confidence 5789999999988 99999999999999999999999999999999999998887743 1 279999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHH----HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQ----RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG- 154 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~- 154 (369)
+.+.+.++ ++.+..++++....... ....+..+|+++||+++........+...+++++|+||+|.+.+++
T Consensus 81 ~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~ 156 (523)
T 1oyw_A 81 QVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGH 156 (523)
T ss_dssp HHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSS
T ss_pred HHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCC
Confidence 99999886 67777888776654432 2334678999999999853222112233568999999999998765
Q ss_pred -cHHHH---HHHHhhCCccCcEEEEEeeCChhHHHHHHHhc--CCCEEEEecCccccccceeEEEEEccchhhhHHHHHH
Q 017573 155 -FKDQI---YDIFQLLPAKVQVGVFSATMPPEALEITRKFM--NKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCD 228 (369)
Q Consensus 155 -~~~~~---~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (369)
+...+ ..+...++ ..+++++|||+++.....+...+ ..+..... ....+++..... ....+.+.+.+
T Consensus 157 ~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~~l~~~v~---~~~~~~~~l~~ 229 (523)
T 1oyw_A 157 DFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS---SFDRPNIRYMLM---EKFKPLDQLMR 229 (523)
T ss_dssp CCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC---CCCCTTEEEEEE---ECSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC---CCCCCceEEEEE---eCCCHHHHHHH
Confidence 43333 33444554 57899999999987655444433 33433322 122233332222 22345677778
Q ss_pred HHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEE
Q 017573 229 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308 (369)
Q Consensus 229 ~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 308 (369)
++....++++||||++++.++.+++.|...+..+..+||+++.++|.++++.|.+|+.+|||||+++++|+|+|++++||
T Consensus 230 ~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE
T ss_pred HHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE
Confidence 88777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHH
Q 017573 309 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 352 (369)
Q Consensus 309 ~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 352 (369)
+++.|+|...|.|++||+||.|++|.+++++++.|...++.+.+
T Consensus 310 ~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp ESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888776655443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.2e-49 Score=351.84 Aligned_cols=326 Identities=21% Similarity=0.263 Sum_probs=257.6
Q ss_pred HHHHHHHh-CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH
Q 017573 6 NLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 6 ~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
++.+.+++ +++ +|+|+|.++++.+.+++++++.+|||+|||++++++++..... +++++|++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHH
Confidence 45555654 566 8999999999999999999999999999999888887776633 338999999999999999999
Q ss_pred HHhccccCcEEEEEECCcchHH---HHHHH-ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc--------
Q 017573 85 RALGDYLGVKVHACVGGTSVRE---DQRIL-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-------- 152 (369)
Q Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~---~~~~~-~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-------- 152 (369)
.++.. .++++..++|+..... ....+ .++++|+|+||+.+...+.. .....++++|+||+|.+..
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99877 7889999999887632 22333 34589999999999877765 4556789999999998764
Q ss_pred ---cCcHHH-HHHHHhhCC-----------ccCcEEEEEeeC-ChhHH-HHHHHhcCCCEEEEecCccccccceeEEEEE
Q 017573 153 ---RGFKDQ-IYDIFQLLP-----------AKVQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFYVN 215 (369)
Q Consensus 153 ---~~~~~~-~~~~~~~~~-----------~~~~~i~~saT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (369)
.++... +..++..++ +..|++++|||+ +.... .....+.. +...........+.+.+..
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 237 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEES
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeec
Confidence 445555 666776665 778999999994 43322 22333332 1122233334455555554
Q ss_pred ccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE---
Q 017573 216 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT--- 291 (369)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~--- 291 (369)
.. +.+.+..++.. .++++||||++++.++.+++.|...+..+. .+||+ +|. ++.|++|+.+|||+
T Consensus 238 ~~----~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s 306 (414)
T 3oiy_A 238 SR----SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQA 306 (414)
T ss_dssp SC----CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECC
T ss_pred cC----HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecC
Confidence 42 44556666665 348999999999999999999999999998 88884 333 99999999999999
Q ss_pred -ecCCcCCCCCCC-CcEEEEecCC--CCccchhhhhcccccCC----CceeEEEEeccccHHHHHHHHHHhc
Q 017573 292 -TDLLARGIDVQQ-VSLVINYDLP--TQPENYLHRIGRSGRFG----RKGVAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 292 -t~~~~~G~d~~~-~~~vi~~~~~--~~~~~~~Q~~GR~~R~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
|+++++|+|+|+ +++||+++.| .+...|.|++||+||.| +.|.+++++ .+...++.+.+.++
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 479999998 77788888888887
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.8e-47 Score=361.01 Aligned_cols=348 Identities=20% Similarity=0.259 Sum_probs=269.0
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhc-cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+|||+++.+.++++|+.+|+++|.++++. +.+++++++++|||+|||+++.+++++.+... +.+++|++|+++|+.|
T Consensus 6 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q 83 (720)
T 2zj8_A 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEE 83 (720)
T ss_dssp CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHH
Confidence 68999999999999999999999999998 88899999999999999999999998777532 2389999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
+.+.++++. ..+.++...+|+...... ...+++|+|+||+++...+........++++||+||+|.+.+......+
T Consensus 84 ~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~ 159 (720)
T 2zj8_A 84 KFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATL 159 (720)
T ss_dssp HHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred HHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHH
Confidence 999996554 348889888887654332 1246899999999999888886665778999999999999877777888
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEE------Ecc----chhhhHHHHHHH
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV------NVE----KEEWKLETLCDL 229 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~ 229 (369)
..++..+++..+++++|||++. ..++. .++.... +... ..+..+...+. ... ........+.+.
T Consensus 160 ~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (720)
T 2zj8_A 160 EVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDA 233 (720)
T ss_dssp HHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHH
T ss_pred HHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHH
Confidence 8888777668899999999963 33343 3443221 1111 11111111111 111 022334445544
Q ss_pred HHhccCCCeEEEeCCHhhHHHHHHHHhhCC---------------------------------CeeEEecCCCCHHHHHH
Q 017573 230 YETLAITQSVIFVNTRRKVDWLTDKMRSRD---------------------------------HTVSATHGDMDQNTRDI 276 (369)
Q Consensus 230 ~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~~ 276 (369)
+. +++++||||+++++++.+++.|.+.. ..+..+||+++.++|..
T Consensus 234 ~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 311 (720)
T 2zj8_A 234 IR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311 (720)
T ss_dssp HH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred Hh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHH
Confidence 43 35799999999999999999887531 24899999999999999
Q ss_pred HHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec----CCCCccchhhhhcccccCC--CceeEEEEeccccHHH
Q 017573 277 IMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDERM 346 (369)
Q Consensus 277 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~----~~~~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~~~~ 346 (369)
+++.|.+|..+|||||+++++|+|+|++++||. ++ .|.+..+|.||+||+||.| ..|.|++++++.+..
T Consensus 312 v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~- 390 (720)
T 2zj8_A 312 VEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR- 390 (720)
T ss_dssp HHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH-
T ss_pred HHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH-
Confidence 999999999999999999999999999999987 44 4788999999999999988 468999999988733
Q ss_pred HHHHHHHhccccccCCcc
Q 017573 347 LFDIQKFYNVVIEELPSN 364 (369)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~ 364 (369)
..+.+++....++++..
T Consensus 391 -~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 391 -EVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp -HHHHHHTTSCCCCCCCC
T ss_pred -HHHHHHhcCCCCCcEee
Confidence 23445555555555433
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-47 Score=366.92 Aligned_cols=354 Identities=22% Similarity=0.259 Sum_probs=228.6
Q ss_pred HHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC--CccEEEEcCCHHHHHHHHHHH
Q 017573 7 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 7 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~ 84 (369)
+..+|..+|+.+||++|.++++.+.+++++++++|||+|||+++++++++.+..... +++++|++|+++|+.||.+.+
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999987765432 248999999999999999999
Q ss_pred HHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEechhHhhccCcHHHH-HHH
Q 017573 85 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQI-YDI 162 (369)
Q Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~-~~~ 162 (369)
.++....++++..++|+............+++|+|+||+.+...+..... ....++++|+||||++.+......+ ...
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99988778899999988765444444445689999999999999988766 6778999999999998755422222 222
Q ss_pred Hhh-----CCccCcEEEEEeeCC-------hhHHHHHHHh----------------------cCCCEEEEecCccccc--
Q 017573 163 FQL-----LPAKVQVGVFSATMP-------PEALEITRKF----------------------MNKPVRILVKRDELTL-- 206 (369)
Q Consensus 163 ~~~-----~~~~~~~i~~saT~~-------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~-- 206 (369)
+.. .++..++++|||||. .+....+... ...|............
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 221 245789999999997 2222211111 1112111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 017573 207 -------------------------------------------------------------------------------- 206 (369)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (369)
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence
Q ss_pred -----------------------------cceeEEEE---------------EccchhhhHHHHHHHHHhc----cCCCe
Q 017573 207 -----------------------------EGIKQFYV---------------NVEKEEWKLETLCDLYETL----AITQS 238 (369)
Q Consensus 207 -----------------------------~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~----~~~k~ 238 (369)
..+.+.+. .......+...+..++... +++++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000 0001233556666666654 56799
Q ss_pred EEEeCCHhhHHHHHHHHhhCC----CeeEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEecCCcCCCCCCCCc
Q 017573 239 VIFVNTRRKVDWLTDKMRSRD----HTVSAT--------HGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVS 305 (369)
Q Consensus 239 lv~~~~~~~~~~~~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~ 305 (369)
||||++++.++.+++.|...+ .++..+ |++++.++|.++++.|++ |+.+|||+|+++++|+|+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999987 788888 459999999999999998 9999999999999999999999
Q ss_pred EEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH----HHHhccccccCC
Q 017573 306 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI----QKFYNVVIEELP 362 (369)
Q Consensus 306 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 362 (369)
+||++++|++...|.||+|| ||. +.|.++++++..+....+.+ +++++..+.+++
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 998 78999999998877655555 445555444443
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-46 Score=355.46 Aligned_cols=347 Identities=19% Similarity=0.251 Sum_probs=261.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhc-cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+|||+++.+.++.+||.+|+++|.++++. +.+++++++++|||+|||+++.+++++.+... +.+++|++|+++|+.|
T Consensus 13 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q 90 (715)
T 2va8_A 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNE 90 (715)
T ss_dssp SSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHH
Confidence 58999999999999999999999999999 77899999999999999999999998876532 2389999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
+.+.++.+ ...+.++....|+...... . ..+++|+|+||+.+...+.......+++++||+||+|.+.+..+...+
T Consensus 91 ~~~~~~~~-~~~g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l 166 (715)
T 2va8_A 91 KYLTFKDW-ELIGFKVAMTSGDYDTDDA--W-LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVV 166 (715)
T ss_dssp HHHHHGGG-GGGTCCEEECCSCSSSCCG--G-GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHH
T ss_pred HHHHHHHh-hcCCCEEEEEeCCCCCchh--h-cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHH
Confidence 99999644 3447888888887654332 1 236899999999999988886655778999999999998876777777
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEE-----------EEccc--------hh
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY-----------VNVEK--------EE 220 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--------~~ 220 (369)
..+...++ ..+++++|||++. ..++.. ++..+.. ..... +..+...+ ..... ..
T Consensus 167 ~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~~-~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (715)
T 2va8_A 167 ESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEPV-ATNWR---PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDD 239 (715)
T ss_dssp HHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEEE-ECCCC---SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred HHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCcc-CCCCC---CCCceEEEEecCCcccceeeecCcchhhhcccch
Confidence 77776665 7889999999963 334443 4443221 11111 11111110 00110 12
Q ss_pred hhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCC------------------------------------CeeEE
Q 017573 221 WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD------------------------------------HTVSA 264 (369)
Q Consensus 221 ~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~ 264 (369)
.....+.+.+. .++++||||+++++++.+++.|.+.. ..+..
T Consensus 240 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 240 AIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 33444444443 45799999999999999999998642 24899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec-------CCCCccchhhhhcccccCC--C
Q 017573 265 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPTQPENYLHRIGRSGRFG--R 331 (369)
Q Consensus 265 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-------~~~~~~~~~Q~~GR~~R~~--~ 331 (369)
+||+++.++|..+++.|.+|..+|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||.| .
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~ 397 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQ 397 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCS
T ss_pred ECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 999999999999999999999999999999999999999999998 77 7889999999999999987 4
Q ss_pred ceeEEEEeccccHHHHHHHHHHhccccccCCc
Q 017573 332 KGVAINFVTRDDERMLFDIQKFYNVVIEELPS 363 (369)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (369)
.|.|++++++.+. ....+.+++....+.++.
T Consensus 398 ~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s 428 (715)
T 2va8_A 398 IGESIVVVRDKED-VDRVFKKYVLSDVEPIES 428 (715)
T ss_dssp CEEEEEECSCGGG-HHHHHHHTTSSCCCCCCC
T ss_pred CceEEEEeCCchH-HHHHHHHHHcCCCCCcee
Confidence 6999999887764 112233454444444443
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-47 Score=356.28 Aligned_cols=333 Identities=17% Similarity=0.196 Sum_probs=200.8
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC--CccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
++..+|||+|.++++.+..++++++.+|||+|||+++++++++.+..... ++++||++|+++|+.||.+.+.++....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34568999999999999999999999999999999999999988766432 4489999999999999999999998888
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEechhHhhccCcHHHHH-HHHhh----
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQIY-DIFQL---- 165 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~-~~~~~---- 165 (369)
++++..++|+............+++|+|+||+.+...+..... ....++++|+||||++.+.+....+. ..+..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 8999999988865554444455689999999999999988777 67889999999999998766433332 22211
Q ss_pred CCccCcEEEEEeeCChh-----------HHHHHHHh------------------cCCCEEEEecCccccccc--------
Q 017573 166 LPAKVQVGVFSATMPPE-----------ALEITRKF------------------MNKPVRILVKRDELTLEG-------- 208 (369)
Q Consensus 166 ~~~~~~~i~~saT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-------- 208 (369)
..+..+++++||||... ...+...+ ...+..............
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 13567899999999531 11111111 111111110000000000
Q ss_pred -------------eeEEEE-------------------------------------------------------------
Q 017573 209 -------------IKQFYV------------------------------------------------------------- 214 (369)
Q Consensus 209 -------------~~~~~~------------------------------------------------------------- 214 (369)
......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000000
Q ss_pred -------------------------------------------EccchhhhHHHHHHHHHh----ccCCCeEEEeCCHhh
Q 017573 215 -------------------------------------------NVEKEEWKLETLCDLYET----LAITQSVIFVNTRRK 247 (369)
Q Consensus 215 -------------------------------------------~~~~~~~~~~~l~~~~~~----~~~~k~lv~~~~~~~ 247 (369)
.......+...+.+++.. ..+.++||||++++.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 000012244444555543 456799999999999
Q ss_pred HHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecCCcCCCCCCCCcEEEEecCCC
Q 017573 248 VDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPT 314 (369)
Q Consensus 248 ~~~~~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 314 (369)
++.+++.|... |.....+||+++.++|.++++.|++ |+.+|||+|+++++|+|+|++++||++++|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999876 4455566778999999999999999 9999999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEeccccHHHHH
Q 017573 315 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF 348 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~ 348 (369)
|+..|.||+|| ||. +.|.++++++..+.+...
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENE 514 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcchHHHH
Confidence 99999999999 998 889999999987665443
No 23
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-45 Score=339.94 Aligned_cols=325 Identities=20% Similarity=0.228 Sum_probs=249.9
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
+|+|+|.++++.+.++ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++....+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 7999999999999999 9999999999999999988887765 223389999999999999999999987544557888
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEe
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
++|+......... ...++|+|+||+.+...+.........+++||+||||++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 8888775544333 235799999999999988887777888999999999998765445555555555566788999999
Q ss_pred eCChhH---HHHHHHhcCCCEEEEecCccc-----cccceeEEEEEc---------------------------------
Q 017573 178 TMPPEA---LEITRKFMNKPVRILVKRDEL-----TLEGIKQFYVNV--------------------------------- 216 (369)
Q Consensus 178 T~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------------------- 216 (369)
||..+. ..+...+.............. ............
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 997432 223332222211111110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 017573 217 -------------------------------------------------------------------------------- 216 (369)
Q Consensus 217 -------------------------------------------------------------------------------- 216 (369)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred --------------cchhhhHHHHHHHHHh----ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecC--------CCC
Q 017573 217 --------------EKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG--------DMD 270 (369)
Q Consensus 217 --------------~~~~~~~~~l~~~~~~----~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~ 270 (369)
.....+...+.+++.. ..+.++||||++.+.++.+++.|...+..+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 0122244555556655 46789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHH
Q 017573 271 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347 (369)
Q Consensus 271 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~ 347 (369)
.++|.++++.|++|+.+|||+|+++++|+|+|.+++||++++|+++..|.|++||+||.|+ |.++.++++.+.+..
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~ 480 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEA 480 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999998876543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-46 Score=358.48 Aligned_cols=327 Identities=18% Similarity=0.252 Sum_probs=253.2
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
||+.+.+.++++||.+|+++|.++++.+.+++++++++|||+|||+++.+++++.+..+ ++++|++|+++|+.|+.+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~l~i~P~r~La~q~~~ 86 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLRALAGEKYE 86 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CcEEEEeCcHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999877643 389999999999999999
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHH
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 162 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~ 162 (369)
.++++. ..+.++....|+...... ...+++|+|+||+++...+.+.....+.+++||+||+|.+.+......+..+
T Consensus 87 ~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (702)
T 2p6r_A 87 SFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (702)
T ss_dssp HHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHH
Confidence 996543 447888888887654332 1236899999999999988886665778999999999998876666666555
Q ss_pred HhhC---CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEE--------EEcc----chhhhHHHHH
Q 017573 163 FQLL---PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY--------VNVE----KEEWKLETLC 227 (369)
Q Consensus 163 ~~~~---~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~l~ 227 (369)
+..+ .+..+++++|||++. ..++. .++..+.. ..... +..+...+ .... ........+.
T Consensus 163 l~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~~~-~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (702)
T 2p6r_A 163 VTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADYY-VSDWR---PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVE 236 (702)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEEE-ECCCC---SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHH
T ss_pred HHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCCcc-cCCCC---CccceEEEeeCCeeeccCcchhhhhhhhHHHHHH
Confidence 5444 568899999999973 33444 44443321 11111 11111111 1100 0011444455
Q ss_pred HHHHhccCCCeEEEeCCHhhHHHHHHHHhhC------------------------------CCeeEEecCCCCHHHHHHH
Q 017573 228 DLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------------------------DHTVSATHGDMDQNTRDII 277 (369)
Q Consensus 228 ~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~------------------------------~~~~~~~~~~~~~~~r~~~ 277 (369)
+.+. .++++||||+++++++.+++.|... +..+..+||+++.++|..+
T Consensus 237 ~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 237 ECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp HHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred HHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 4443 4679999999999999999888653 1357889999999999999
Q ss_pred HHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec---CCCCccchhhhhcccccCC--CceeEEEEeccccH
Q 017573 278 MREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD---LPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDE 344 (369)
Q Consensus 278 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~---~~~~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~~ 344 (369)
++.|.+|..+|||||+++++|+|+|++++||. ++ .|.+..+|.||+||+||.| ..|.|++++++.+.
T Consensus 315 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 315 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999999999987 44 6788999999999999988 47999999998773
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.4e-46 Score=347.52 Aligned_cols=332 Identities=20% Similarity=0.215 Sum_probs=228.8
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC--CccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
.+|+|+|.++++.+.+++++++.+|||+|||++++++++..+..... ++++||++|+++|+.||.+.+.++....+++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 37999999999999999999999999999999999999988776432 4489999999999999999999998888899
Q ss_pred EEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEechhHhhccCcHHH-HHHHHhhC-----C
Q 017573 95 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQ-IYDIFQLL-----P 167 (369)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~-~~~~~~~~-----~ 167 (369)
+..++|+............+++|+|+||+.+...+..... ....++++|+||||++.+...... +...+... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 9999998876555444455689999999999999988776 677799999999999976643222 22332221 2
Q ss_pred ccCcEEEEEeeCChhH-------HH---HHHHhcCCCEEEEecCc------cccccceeEEEEE----------------
Q 017573 168 AKVQVGVFSATMPPEA-------LE---ITRKFMNKPVRILVKRD------ELTLEGIKQFYVN---------------- 215 (369)
Q Consensus 168 ~~~~~i~~saT~~~~~-------~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------------- 215 (369)
+..+++++||||.... .. .....+........... .............
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMK 242 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHH
Confidence 4578999999995421 11 11112221111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 017573 216 -------------------------------------------------------------------------------- 215 (369)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 322 (555)
T 3tbk_A 243 ETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQM 322 (555)
T ss_dssp HHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence
Q ss_pred -------------------------------------------ccchhhhHHHHHHHHHh----ccCCCeEEEeCCHhhH
Q 017573 216 -------------------------------------------VEKEEWKLETLCDLYET----LAITQSVIFVNTRRKV 248 (369)
Q Consensus 216 -------------------------------------------~~~~~~~~~~l~~~~~~----~~~~k~lv~~~~~~~~ 248 (369)
......+...+.+++.. .+..++||||++++.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 323 TDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALV 402 (555)
T ss_dssp HHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHH
Confidence 00012244444444443 3568999999999999
Q ss_pred HHHHHHHhhCC------------CeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecCCcCCCCCCCCcEEEEecCCCC
Q 017573 249 DWLTDKMRSRD------------HTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 315 (369)
Q Consensus 249 ~~~~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~ 315 (369)
+.+++.|...+ .....+||+++.++|.++++.|++ |+++|||||+++++|+|+|++++||++++|+|
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s 482 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSS
T ss_pred HHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCC
Confidence 99999998863 344455569999999999999999 99999999999999999999999999999999
Q ss_pred ccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 316 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 316 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
+..|.||+|| ||. +.|.+++++++.+......+
T Consensus 483 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 483 VIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999 898 88999999998877766655
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-45 Score=355.83 Aligned_cols=333 Identities=18% Similarity=0.217 Sum_probs=207.9
Q ss_pred hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC--CccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 13 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
.+|+..|+|+|.++++.+..++++++.+|||+|||++++++++..+..... ++++||++|+++|+.||.+.+.++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999999999999999999999988776432 448999999999999999999999888
Q ss_pred cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEechhHhhccCcHHHHH-HHHhh---
Q 017573 91 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQIY-DIFQL--- 165 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~-~~~~~--- 165 (369)
.++++..++|+............+++|+|+||+.+...+..... ....+++||+||||++.+......+. .+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 88999999998876655555556789999999999999887766 67779999999999987654333322 22222
Q ss_pred -CCccCcEEEEEeeCChh-----------HHHHHH------------------HhcCCCEEEEecCccccccc-------
Q 017573 166 -LPAKVQVGVFSATMPPE-----------ALEITR------------------KFMNKPVRILVKRDELTLEG------- 208 (369)
Q Consensus 166 -~~~~~~~i~~saT~~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------- 208 (369)
..+..+++++||||... ...+.. .++..+..............
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHH
Confidence 14568899999999521 111111 11111111110000000000
Q ss_pred -----------------eeEEE-EEc------------------------------------------------------
Q 017573 209 -----------------IKQFY-VNV------------------------------------------------------ 216 (369)
Q Consensus 209 -----------------~~~~~-~~~------------------------------------------------------ 216 (369)
+.... ...
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 00000 000
Q ss_pred ----------------------------------------------cchhhhHHHHHHHHHh----ccCCCeEEEeCCHh
Q 017573 217 ----------------------------------------------EKEEWKLETLCDLYET----LAITQSVIFVNTRR 246 (369)
Q Consensus 217 ----------------------------------------------~~~~~~~~~l~~~~~~----~~~~k~lv~~~~~~ 246 (369)
.....+...+..++.. .++.++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~ 642 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHH
Confidence 0012244444455543 45689999999999
Q ss_pred hHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecCCcCCCCCCCCcEEEEecCC
Q 017573 247 KVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLP 313 (369)
Q Consensus 247 ~~~~~~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 313 (369)
.++.+++.|+.. |.....+||+++..+|.++++.|++ |+++|||+|+++++|+|+|++++||++++|
T Consensus 643 ~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp HHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCC
T ss_pred HHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999874 4456677888999999999999999 999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccccHHHH
Q 017573 314 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347 (369)
Q Consensus 314 ~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~ 347 (369)
+|+..|.||+|| ||. +.|.++++++..+....
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp SCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 999999999999 998 88999999988766443
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-45 Score=359.85 Aligned_cols=325 Identities=19% Similarity=0.221 Sum_probs=251.5
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
+++.+...+.......|+++|.++++.+..+++++++||||+|||+++.++++..+..+. +++|++|+++|+.|+++
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHHHHHHHHH
Confidence 444444455555556899999999999999999999999999999999999998876544 89999999999999999
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHH
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 162 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~ 162 (369)
.+.++.. .+..++|+.. ...+++|+|+||+.|.+++.+......++++||+||+|++.+.++...+..+
T Consensus 246 ~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~i 314 (1108)
T 3l9o_A 246 ELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 314 (1108)
T ss_dssp HHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHH
T ss_pred HHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHH
Confidence 9999765 5666777665 2346899999999999999887776777999999999999988888889999
Q ss_pred HhhCCccCcEEEEEeeCChh--HHHHHHHhcCCCEEEEecCccccccceeEEEEEccc----------------------
Q 017573 163 FQLLPAKVQVGVFSATMPPE--ALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------------------- 218 (369)
Q Consensus 163 ~~~~~~~~~~i~~saT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 218 (369)
+..+++..+++++|||++.. ...........+..+...... +..+..++.....
T Consensus 315 i~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~ 392 (1108)
T 3l9o_A 315 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 392 (1108)
T ss_dssp HHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHH
T ss_pred HHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhhhhHHHHH
Confidence 99999999999999998643 334444444444443332211 1111222211000
Q ss_pred --------------------------------hhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCe-----
Q 017573 219 --------------------------------EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT----- 261 (369)
Q Consensus 219 --------------------------------~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~----- 261 (369)
.......+...+.....+++||||+++..++.++..|...+..
T Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~ 472 (1108)
T 3l9o_A 393 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 472 (1108)
T ss_dssp TTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC---
T ss_pred HHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHH
Confidence 0122233344444455679999999999999999998653221
Q ss_pred ----------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEE
Q 017573 262 ----------------------------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 307 (369)
Q Consensus 262 ----------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 307 (369)
+..+||++++.+|..+++.|.+|.++|||||+++++|+|+|.+++|
T Consensus 473 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~V 552 (1108)
T 3l9o_A 473 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 552 (1108)
T ss_dssp -CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEE
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEE
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred EEecCCC--------CccchhhhhcccccCC--CceeEEEEecccc
Q 017573 308 INYDLPT--------QPENYLHRIGRSGRFG--RKGVAINFVTRDD 343 (369)
Q Consensus 308 i~~~~~~--------~~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~ 343 (369)
|.++.++ |..+|.||+||+||.| ..|.+++++++..
T Consensus 553 I~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 553 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp ESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred EecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 9766544 5556999999999999 6789998888763
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-44 Score=346.08 Aligned_cols=323 Identities=20% Similarity=0.269 Sum_probs=253.1
Q ss_pred HHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 11 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 11 l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
...++| +|+++|.++++.+..++++++++|||+|||+++.++++..+..+. +++|++|+++|+.|+.+.+.+++.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~---rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCC---eEEEECChHHHHHHHHHHHHHHhC-
Confidence 345677 599999999999999999999999999999999988888776543 899999999999999999998764
Q ss_pred cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccC
Q 017573 91 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 170 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
++..++|+.... .+++|+|+||+.|..++.++......+++||+||+|.+.+..+...+..++..+++..
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 566777776532 3579999999999998888777778899999999999998888888888999999999
Q ss_pred cEEEEEeeCChhHH--HHHHHhcCCCEEEEecCccccccceeEEEEEcc---------ch--------------------
Q 017573 171 QVGVFSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQFYVNVE---------KE-------------------- 219 (369)
Q Consensus 171 ~~i~~saT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------------------- 219 (369)
+++++|||++.... ..+......+..+..... .+..+..++.... ..
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 99999999864321 222223344443332211 1112222222110 00
Q ss_pred -------------------------hhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCC--------------
Q 017573 220 -------------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH-------------- 260 (369)
Q Consensus 220 -------------------------~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~-------------- 260 (369)
......+...+......++|||++++..++.+++.|...+.
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 11222344444444556999999999999999999876433
Q ss_pred -------------------------eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec
Q 017573 261 -------------------------TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD 311 (369)
Q Consensus 261 -------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~ 311 (369)
.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 2789999999999999999999999999999999999999999999998 88
Q ss_pred C----CCCccchhhhhcccccCCC--ceeEEEEeccc-cHHHHHHH
Q 017573 312 L----PTQPENYLHRIGRSGRFGR--KGVAINFVTRD-DERMLFDI 350 (369)
Q Consensus 312 ~----~~~~~~~~Q~~GR~~R~~~--~~~~~~~~~~~-~~~~~~~~ 350 (369)
. |.++.+|.|++||+||.|. .|.+++++++. +...+..+
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 7 7899999999999999986 49999999876 44444433
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-44 Score=350.77 Aligned_cols=333 Identities=18% Similarity=0.215 Sum_probs=207.0
Q ss_pred hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC--CccEEEEcCCHHHHHHHHHHHHHhccc
Q 017573 13 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDY 90 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~ 90 (369)
-.++.+|+++|.++++.+.+++++++.+|||+|||++++++++..+..... ++++||++|+++|+.||.+.+.++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 346789999999999999999999999999999999999999888766431 448999999999999999999999887
Q ss_pred cCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEechhHhhccCcHHHH-HHHHhh---
Q 017573 91 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQI-YDIFQL--- 165 (369)
Q Consensus 91 ~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~-~~~~~~--- 165 (369)
.++++..++|+............+++|+|+||+.+...+..... ....++++|+||||++.+......+ ..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999998865544334445689999999999999887766 5677999999999998765433222 222222
Q ss_pred -CCccCcEEEEEeeCChh-----------HHHHH------------------HHhcCCCEEEEecCccccccc-------
Q 017573 166 -LPAKVQVGVFSATMPPE-----------ALEIT------------------RKFMNKPVRILVKRDELTLEG------- 208 (369)
Q Consensus 166 -~~~~~~~i~~saT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~------- 208 (369)
..+..+++++||||... ...+. ..++..+..............
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 14467899999999521 11111 111122211111000000000
Q ss_pred -----------------eeEEEE-E-------------------------------------------------------
Q 017573 209 -----------------IKQFYV-N------------------------------------------------------- 215 (369)
Q Consensus 209 -----------------~~~~~~-~------------------------------------------------------- 215 (369)
+..... .
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 000000 0
Q ss_pred ---------------------------------------------ccchhhhHHHHHHHHHh----ccCCCeEEEeCCHh
Q 017573 216 ---------------------------------------------VEKEEWKLETLCDLYET----LAITQSVIFVNTRR 246 (369)
Q Consensus 216 ---------------------------------------------~~~~~~~~~~l~~~~~~----~~~~k~lv~~~~~~ 246 (369)
......+...+.+++.. ..+.++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 00012234444455544 34579999999999
Q ss_pred hHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEecCCcCCCCCCCCcEEEEecCC
Q 017573 247 KVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLP 313 (369)
Q Consensus 247 ~~~~~~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 313 (369)
.++.+++.|... |.....+||+++..+|.++++.|++ |+++|||+|+++++|+|+|++++||++++|
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCC
Confidence 999999999986 4556666888999999999999999 999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccccHHHH
Q 017573 314 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 347 (369)
Q Consensus 314 ~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~ 347 (369)
+|+..|.||+|| ||. +.|.++.+++..+.+..
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee~ 754 (936)
T 4a2w_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (936)
T ss_dssp SCSHHHHCC---------CCCEEEEESCHHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHHH
Confidence 999999999999 998 78999999988765543
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.6e-43 Score=346.34 Aligned_cols=322 Identities=20% Similarity=0.248 Sum_probs=252.8
Q ss_pred HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
..+|| +|+++|.++++.+.++++++++||||+|||++++.+++..+..+ ++++|++|+++|+.|+.+.+.++. ..
T Consensus 73 ~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~---~~~Lil~PtreLa~Q~~~~l~~l~-~~ 147 (1104)
T 4ddu_A 73 KKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKLA-DE 147 (1104)
T ss_dssp HHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHTTS-CT
T ss_pred HhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---CeEEEEechHHHHHHHHHHHHHhh-CC
Confidence 34787 79999999999999999999999999999998888877776433 389999999999999999999977 66
Q ss_pred CcEEEEEECCcch---HHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-----------cCcH
Q 017573 92 GVKVHACVGGTSV---REDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-----------RGFK 156 (369)
Q Consensus 92 ~~~v~~~~~~~~~---~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-----------~~~~ 156 (369)
++++..++|+... ......+. +.++|+|+||+.+.+++.. +...+++++|+||+|.+.. .++.
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~ 225 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 225 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCC
Confidence 8899999998876 33333333 4589999999999877664 4556789999999997654 5555
Q ss_pred HH-HHHHHhhCC-----------ccCcEEEEEeeCCh-hHH-HHHHHhcCCCEEEEecCccccccceeEEEEEccchhhh
Q 017573 157 DQ-IYDIFQLLP-----------AKVQVGVFSATMPP-EAL-EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK 222 (369)
Q Consensus 157 ~~-~~~~~~~~~-----------~~~~~i~~saT~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (369)
.. +..++..++ +..|++++|||+.+ ... ......+. +...........+.+.+.... +
T Consensus 226 ~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~----k 297 (1104)
T 4ddu_A 226 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR----S 297 (1104)
T ss_dssp HHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC----C
T ss_pred HHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC----H
Confidence 56 777777766 78899999999533 322 22333332 222333344555666665542 4
Q ss_pred HHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----ecCCcC
Q 017573 223 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLAR 297 (369)
Q Consensus 223 ~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~ 297 (369)
...+..++... ++++||||++++.++.+++.|...+..+. .+||+ |.+ ++.|++|+.+|||+ |+++++
T Consensus 298 ~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdvlar 370 (1104)
T 4ddu_A 298 KEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTR 370 (1104)
T ss_dssp HHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCC
T ss_pred HHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEe
Confidence 45556666653 48999999999999999999999999998 99982 555 99999999999999 999999
Q ss_pred CCCCCC-CcEEEEecCCC--------------------------------------------------------------
Q 017573 298 GIDVQQ-VSLVINYDLPT-------------------------------------------------------------- 314 (369)
Q Consensus 298 G~d~~~-~~~vi~~~~~~-------------------------------------------------------------- 314 (369)
|+|+|+ +++||++++|.
T Consensus 371 GIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~ 450 (1104)
T 4ddu_A 371 GVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVV 450 (1104)
T ss_dssp SCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEE
T ss_pred cCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEe
Confidence 999999 99999999998
Q ss_pred ----------CccchhhhhcccccCCCce--eEEEEeccccHHHHHHHHHHhc
Q 017573 315 ----------QPENYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 315 ----------~~~~~~Q~~GR~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
+..+|+||+||+||.|..| ..+.+...+|.+.++.+.+.++
T Consensus 451 ~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 451 KDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred cCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 6668999999999975432 3343444488888888888876
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=9e-44 Score=339.97 Aligned_cols=323 Identities=17% Similarity=0.235 Sum_probs=220.7
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC---CccEEEEcCCHHHHHHH-HHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLAPTRELAQQI-EKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~liv~P~~~l~~q~-~~~~~~~~~~~~ 92 (369)
..|+++|.++++.+.+++++++.+|||+|||++++++++..+..+.. ++++||++|+++|+.|| .+.+.++... +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 48999999999999999999999999999999999999887765422 23899999999999999 9999998765 4
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHH------HcCCCCCCCccEEEEechhHhhccC-cHHHHHHHHhh
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML------RRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQL 165 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~------~~~~~~~~~~~~viiDE~H~~~~~~-~~~~~~~~~~~ 165 (369)
+++..++|+.............++|+|+||+.|...+ ....+....+++||+||||++.... +......+...
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 7888888887655444444567899999999999887 4445666779999999999875433 22222222211
Q ss_pred -------------CCccCcEEEEEeeCChh-----------HHHHHHHhc------------------CCCEEEEecCcc
Q 017573 166 -------------LPAKVQVGVFSATMPPE-----------ALEITRKFM------------------NKPVRILVKRDE 203 (369)
Q Consensus 166 -------------~~~~~~~i~~saT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~ 203 (369)
..+..+++++||||... ...+...+. ..|.........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 11457899999999852 111111111 111111100000
Q ss_pred ccccc-----------------e---eE----------------------------------------------------
Q 017573 204 LTLEG-----------------I---KQ---------------------------------------------------- 211 (369)
Q Consensus 204 ~~~~~-----------------~---~~---------------------------------------------------- 211 (369)
..... + ..
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00
Q ss_pred ----------------------EEEEccc-------------------------hhhhH----HHHHHHHHhcc-CCCeE
Q 017573 212 ----------------------FYVNVEK-------------------------EEWKL----ETLCDLYETLA-ITQSV 239 (369)
Q Consensus 212 ----------------------~~~~~~~-------------------------~~~~~----~~l~~~~~~~~-~~k~l 239 (369)
....... ...+. +.+...+...+ ++++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 0000000 00011 11222222223 68999
Q ss_pred EEeCCHhhHHHHHHHHhhC------CCeeEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCc
Q 017573 240 IFVNTRRKVDWLTDKMRSR------DHTVSATHGD--------MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 305 (369)
Q Consensus 240 v~~~~~~~~~~~~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 305 (369)
|||++++.++.+++.|... +.++..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccchhhhhcccccCCCceeEEEEeccc
Q 017573 306 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 306 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
+||++++|+|+..|.|++||+||.| +.++++....
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 9999999999999999999987654 4444444433
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-42 Score=336.20 Aligned_cols=321 Identities=17% Similarity=0.243 Sum_probs=247.5
Q ss_pred hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 13 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
.++| +|+++|.++++.+.+++++++.+|||+|||+++++++...+..+. +++|++|+++|+.|+++.+.++.. +
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~---~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT---KTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 3566 699999999999999999999999999999998888887665443 899999999999999999998654 5
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcE
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 172 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
.++..++|+... ..+++|+|+||+.|...+.........+++||+||+|.+.++++...+..++..+++..++
T Consensus 109 ~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 677888887652 2457999999999999888877777889999999999998888888888899999999999
Q ss_pred EEEEeeCChhHHHHHHHhc---CCCEEEEecCccccccceeEEE------------------------------------
Q 017573 173 GVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFY------------------------------------ 213 (369)
Q Consensus 173 i~~saT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 213 (369)
+++|||++.. .++..++. ..+..+...... +..+...+
T Consensus 182 IlLSAT~~n~-~ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNT-YEFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTH-HHHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCCh-HHHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 9999998643 23333322 122221111100 00011000
Q ss_pred --------------------------------------------------------EEccchhhhHHHHHHHHHhccCCC
Q 017573 214 --------------------------------------------------------VNVEKEEWKLETLCDLYETLAITQ 237 (369)
Q Consensus 214 --------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~k 237 (369)
............+...+......+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~ 338 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLP 338 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCC
Confidence 000112233556666677667789
Q ss_pred eEEEeCCHhhHHHHHHHHhhCCC---------------------------------------eeEEecCCCCHHHHHHHH
Q 017573 238 SVIFVNTRRKVDWLTDKMRSRDH---------------------------------------TVSATHGDMDQNTRDIIM 278 (369)
Q Consensus 238 ~lv~~~~~~~~~~~~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~ 278 (369)
+||||++++.++.++..|...+. .+..+||++++.+|..++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999977554 578999999999999999
Q ss_pred HHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCC---------CccchhhhhcccccCC--CceeEEEEec--cccHH
Q 017573 279 REFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------QPENYLHRIGRSGRFG--RKGVAINFVT--RDDER 345 (369)
Q Consensus 279 ~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------~~~~~~Q~~GR~~R~~--~~~~~~~~~~--~~~~~ 345 (369)
+.|.+|..+|||||+++++|+|+|+ ..||+.+.++ |..+|.|++||+||.| ..|.+++++. ..+..
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~ 497 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIA 497 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHH
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHH
Confidence 9999999999999999999999999 6666655554 8999999999999998 5578888873 34555
Q ss_pred HHHHH
Q 017573 346 MLFDI 350 (369)
Q Consensus 346 ~~~~~ 350 (369)
.++.+
T Consensus 498 ~~~~~ 502 (997)
T 4a4z_A 498 TFKEV 502 (997)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.8e-42 Score=336.99 Aligned_cols=321 Identities=18% Similarity=0.206 Sum_probs=248.2
Q ss_pred CCCHHHHHHH-HhCCCCCCcHhhhhhhhcccc----CC--cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 2 GLQENLLRGI-YAYGFEKPSAIQQRGIVPFCK----GL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 2 ~l~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~----~~--~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
+.++...+.+ ..++| +++|+|.++++.+.+ ++ ++++++|||+|||.+++.+++..+..+. +++|++|++
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~---~vlvlvPt~ 662 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK---QVAVLVPTT 662 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC---EEEEECSSH
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC---eEEEEechH
Confidence 4556666666 56888 579999999999886 55 8999999999999999888877665443 899999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHh
Q 017573 75 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 150 (369)
Q Consensus 75 ~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~ 150 (369)
+|+.|+.+.+.+.....+.++..+.+......... ...+.++|+|+|++.+. ......+++++|+||+|++
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc
Confidence 99999999999888777888888887665444332 22346899999997663 3456678999999999995
Q ss_pred hccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHH
Q 017573 151 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (369)
. ......+..++...++++|||||.+.........+.....+ .........+..++...... .....++
T Consensus 738 g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~~----~i~~~il 806 (1151)
T 2eyq_A 738 G-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDSM----VVREAIL 806 (1151)
T ss_dssp C-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCHH----HHHHHHH
T ss_pred C-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCHH----HHHHHHH
Confidence 3 22334445555678899999999877666555544333222 11222222334433333221 1222222
Q ss_pred Hh-ccCCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEE
Q 017573 231 ET-LAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 307 (369)
Q Consensus 231 ~~-~~~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 307 (369)
.. ..+++++|||++++.++.+++.|++. +..+..+||+++..+|.++++.|.+|+.+|||||+++++|+|+|++++|
T Consensus 807 ~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 807 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp HHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEE
T ss_pred HHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEE
Confidence 22 24579999999999999999999887 7789999999999999999999999999999999999999999999999
Q ss_pred EEecC-CCCccchhhhhcccccCCCceeEEEEeccc
Q 017573 308 INYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 308 i~~~~-~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
|+.+. +++...+.|++||+||.|+.|.|++++++.
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99887 578899999999999999999999998764
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-43 Score=331.82 Aligned_cols=325 Identities=18% Similarity=0.251 Sum_probs=240.3
Q ss_pred HHHHHHHHhCCCCCCcHhhhhhhhccccC------CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 5 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 5 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
+.+.+.++.++| +|+++|+++++.+.++ .++++++|||+|||.+++++++..+..+. +++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~---qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHH
Confidence 345556688999 9999999999998865 58999999999999999999998877654 8999999999999
Q ss_pred HHHHHHHHhccccCcEEEEEECCcchHHHHH----HHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC
Q 017573 79 QIEKVMRALGDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 154 (369)
Q Consensus 79 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~ 154 (369)
|+.+.+.++....++++..++|+........ ...+.++|+|+||+.+.. .....+++++|+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 9999999998888899999999887655432 233568999999987743 3456778999999999863221
Q ss_pred cHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCC-CEEEEecCccccccceeEEEEEccchhhhHHHHHHHHH-h
Q 017573 155 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE-T 232 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 232 (369)
...+.......++++|||||.+....... +.. ...... ........+...+. ... ....+...+. .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~-~~p~~r~~i~~~~~---~~~-~~~~l~~~i~~~ 574 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVID-EMPPGRKEVQTMLV---PMD-RVNEVYEFVRQE 574 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEEC-CCCSSCCCCEECCC---CSS-THHHHHHHHHHH
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeee-ccCCCCcceEEEEe---ccc-hHHHHHHHHHHH
Confidence 11122223468899999999776544332 222 112111 11111112222111 111 2222333332 2
Q ss_pred c-cCCCeEEEeCCHh--------hHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCC
Q 017573 233 L-AITQSVIFVNTRR--------KVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 300 (369)
Q Consensus 233 ~-~~~k~lv~~~~~~--------~~~~~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 300 (369)
. .+++++|||+..+ .++.+++.|.+ .+..+..+||+++.++|.++++.|++|+.+|||||+++++|+|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 2 4568999999654 47788888887 4678999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCC-CccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 301 VQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 301 ~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
+|++++||+++++. +...+.|++||+||.|+.|.|++++++.+....+.+
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 99999999999985 678899999999999999999999985444443333
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.2e-43 Score=343.09 Aligned_cols=321 Identities=19% Similarity=0.271 Sum_probs=250.1
Q ss_pred HhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
+.+||. | ++|.++++.+.+++++++++|||+|||+ +.++++..+.. .+++++|++|+++|+.|+.+.++++....
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 458998 9 9999999999999999999999999998 55666655543 23489999999999999999999998877
Q ss_pred Cc----EEEEEECCcchHHH---HHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHh
Q 017573 92 GV----KVHACVGGTSVRED---QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 164 (369)
Q Consensus 92 ~~----~v~~~~~~~~~~~~---~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~ 164 (369)
++ .+..++|+...... ...+.+ ++|+|+||+.|..++.+ +..++++|+||+|++.+ +...+..++.
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~ 199 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLH 199 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHH
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHH
Confidence 77 88888988876553 233344 89999999999987665 44789999999999987 4566777766
Q ss_pred hC-----------CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhc
Q 017573 165 LL-----------PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 233 (369)
Q Consensus 165 ~~-----------~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (369)
.+ +...|++++|||++.. ......++..+..+...........+.+.+.. ..+...+..++...
T Consensus 200 ~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~~ 274 (1054)
T 1gku_B 200 LLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSILEKL 274 (1054)
T ss_dssp HTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHHTTS
T ss_pred HhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHHhhc
Confidence 66 3467889999999876 42222232222222223333334455555552 23445556666654
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEE----ecCCcCCCCCCCC-cEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLARGIDVQQV-SLVI 308 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G~d~~~~-~~vi 308 (369)
++++||||++++.++.+++.|+.. ..+..+||++ .++++.|++|+.+|||| |+++++|+|+|++ ++||
T Consensus 275 -~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 -GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 478999999999999999999988 8999999997 47889999999999999 8999999999995 9999
Q ss_pred EecCC-----------------------------------------------------------------------CCcc
Q 017573 309 NYDLP-----------------------------------------------------------------------TQPE 317 (369)
Q Consensus 309 ~~~~~-----------------------------------------------------------------------~~~~ 317 (369)
+++.| .+..
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 6889
Q ss_pred chhhhhcccccCCCce--eEEEEeccccHHHHHHHHHHhcc
Q 017573 318 NYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYNV 356 (369)
Q Consensus 318 ~~~Q~~GR~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 356 (369)
+|.|++||+||.|+.| .+++++...+.+.++.+.+.++.
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999999987775 48888888899999989888874
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.2e-42 Score=320.33 Aligned_cols=311 Identities=16% Similarity=0.138 Sum_probs=230.2
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEE
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 96 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~ 96 (369)
.+|+++|.++++.+.+++++++++|||+|||.+++.++...+..+. +++||++|+++|+.||.+.+.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 3899999999999999999999999999999999888887765432 28999999999999999999998665556777
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.+.++...... .....+|+|+|++.+... .......+++||+||+|++.. ..+..++..+++..+++++|
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 77777654433 346689999999976542 223445689999999999754 45667777887788999999
Q ss_pred eeCChhHHHHH--HHhcCCCEEEEecCc------cccccceeEEEEEccch--------------------hhhHHHHHH
Q 017573 177 ATMPPEALEIT--RKFMNKPVRILVKRD------ELTLEGIKQFYVNVEKE--------------------EWKLETLCD 228 (369)
Q Consensus 177 aT~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~ 228 (369)
|||+....... ..++. +..+..... ...+..........+.. ..+...+.+
T Consensus 260 ATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAK 338 (510)
T ss_dssp SCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHH
Confidence 99965432211 12222 222111111 11111122222222111 112233444
Q ss_pred HHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cCCcCCCCCCCCc
Q 017573 229 LYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 305 (369)
Q Consensus 229 ~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 305 (369)
++... .+++.+|++.+.++++.+++.|.+.+.++..+||+++..+|.++++.|.+|+.+|||+| +++++|+|+|.++
T Consensus 339 ~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~ 418 (510)
T 2oca_A 339 LAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLH 418 (510)
T ss_dssp HHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEE
T ss_pred HHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCc
Confidence 44433 23444444455999999999999988899999999999999999999999999999999 9999999999999
Q ss_pred EEEEecCCCCccchhhhhcccccCCCceeEEEEec
Q 017573 306 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 340 (369)
Q Consensus 306 ~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~ 340 (369)
+||+++++++...+.|++||+||.|+.+..+++++
T Consensus 419 ~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 419 HVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999998774444443
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.9e-41 Score=341.33 Aligned_cols=340 Identities=16% Similarity=0.186 Sum_probs=254.3
Q ss_pred HHHHHHHHhCCCCCCcHhhhhhhhcccc-CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHH
Q 017573 5 ENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKV 83 (369)
Q Consensus 5 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~ 83 (369)
.....++...+|..++|+|.++++.+++ +++++++||||||||+++.+++++.+.....+ +++|++|+++|+.|..++
T Consensus 913 ~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~-kavyi~P~raLa~q~~~~ 991 (1724)
T 4f92_B 913 NSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQVYMD 991 (1724)
T ss_dssp CHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTC-CEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCC-EEEEEcChHHHHHHHHHH
Confidence 4455666667899999999999999976 57899999999999999999999988765433 899999999999999999
Q ss_pred HHH-hccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEechhHhhccCcHHHHH
Q 017573 84 MRA-LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR--PDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 84 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~--~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
|.+ +....+.++..++|+...+... ..+++|+|+||++|..+++++... .++++++|+||+|.+.+. ....+.
T Consensus 992 ~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le 1067 (1724)
T 4f92_B 992 WYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLE 1067 (1724)
T ss_dssp HHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHH
T ss_pred HHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHH
Confidence 976 5556789999998877643321 234799999999998777765432 456899999999988653 333333
Q ss_pred HH-------HhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhh------HHHHH
Q 017573 161 DI-------FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK------LETLC 227 (369)
Q Consensus 161 ~~-------~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~ 227 (369)
.+ ....++..|++++|||.+ +..++..++...+...........+..+............. ...+.
T Consensus 1068 ~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~ 1146 (1724)
T 4f92_B 1068 VICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVY 1146 (1724)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHH
Confidence 32 334567889999999986 55666666554443333333344444444444433322111 12222
Q ss_pred HHH-HhccCCCeEEEeCCHhhHHHHHHHHhhC----------------------------------CCeeEEecCCCCHH
Q 017573 228 DLY-ETLAITQSVIFVNTRRKVDWLTDKMRSR----------------------------------DHTVSATHGDMDQN 272 (369)
Q Consensus 228 ~~~-~~~~~~k~lv~~~~~~~~~~~~~~l~~~----------------------------------~~~~~~~~~~~~~~ 272 (369)
..+ ...+.+++||||++++.++..+..|... ...++.+|+++++.
T Consensus 1147 ~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~ 1226 (1724)
T 4f92_B 1147 HAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPM 1226 (1724)
T ss_dssp HHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHH
T ss_pred HHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHH
Confidence 233 3345679999999999998887666321 23588999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEe----------cCCCCccchhhhhcccccCCC--ceeEEEEec
Q 017573 273 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----------DLPTQPENYLHRIGRSGRFGR--KGVAINFVT 340 (369)
Q Consensus 273 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----------~~~~~~~~~~Q~~GR~~R~~~--~~~~~~~~~ 340 (369)
+|..+.+.|++|.++||+||+.++.|+|+|...+||.. ..+.+..+|.||+||+||.|. .|.+++++.
T Consensus 1227 ~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1227 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 99999999999999999999999999999988877732 125678899999999999986 599999999
Q ss_pred cccHHHHHHH
Q 017573 341 RDDERMLFDI 350 (369)
Q Consensus 341 ~~~~~~~~~~ 350 (369)
+.+...++.+
T Consensus 1307 ~~~~~~~~~l 1316 (1724)
T 4f92_B 1307 GSKKDFFKKF 1316 (1724)
T ss_dssp GGGHHHHHHH
T ss_pred chHHHHHHHH
Confidence 8887766544
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-41 Score=344.65 Aligned_cols=341 Identities=18% Similarity=0.284 Sum_probs=249.9
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhcccc-CCcEEEEcCCCChhhHHHHHHHHHhhhcc--------CCCccEEEEcCC
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYG--------LVQCQALVLAPT 73 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~--------~~~~~~liv~P~ 73 (369)
||++.+..+. ||.+|+++|.++++.+++ ++|++++||||||||+++.+++++.+.+. ..+.+++|++|+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 4555444332 689999999999998775 68999999999999999999999887542 234589999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCC--CCCCccEEEEechhHhh
Q 017573 74 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMFVLDEADEML 151 (369)
Q Consensus 74 ~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~--~~~~~~~viiDE~H~~~ 151 (369)
++|+.|..+.|++.....|++|...+|+....... ..+++|+|+|||++..+++++.. ..+.+++||+||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999998888899999999987643321 24589999999999766655432 24568999999999775
Q ss_pred ccCcHHHHHHHH-------hhCCccCcEEEEEeeCChhHHHHHHHhcCCC-EEEEecCccccccceeEEEEEccch--hh
Q 017573 152 SRGFKDQIYDIF-------QLLPAKVQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFYVNVEKE--EW 221 (369)
Q Consensus 152 ~~~~~~~~~~~~-------~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 221 (369)
+ .....+..++ ...++..|++++|||.+ +..+...++...+ ...........+..+.+.+...... ..
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh
Confidence 4 3333333332 34567889999999985 5555555443322 1112222333344455444433321 11
Q ss_pred hHHH----HHHHHHh-ccCCCeEEEeCCHhhHHHHHHHHhhC-------------------------------------C
Q 017573 222 KLET----LCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------D 259 (369)
Q Consensus 222 ~~~~----l~~~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~-------------------------------------~ 259 (369)
..+. +...+.. ...+++||||++++.++..++.|.+. .
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 1222 2222222 34568999999999988888777531 2
Q ss_pred CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----ec------CCCCccchhhhhcccccC
Q 017573 260 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPTQPENYLHRIGRSGRF 329 (369)
Q Consensus 260 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~------~~~~~~~~~Q~~GR~~R~ 329 (369)
..++.+||+++.++|..+.+.|++|.++||+||++++.|+|+|..++||. ++ .+.+..+|.||+|||||.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 34889999999999999999999999999999999999999998888874 33 245788999999999998
Q ss_pred CC--ceeEEEEeccccHHHHHHH
Q 017573 330 GR--KGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 330 ~~--~~~~~~~~~~~~~~~~~~~ 350 (369)
|. .|.++++..+.+...+..+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCccEEEEEecchhHHHHHHH
Confidence 74 5999999998877666554
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3e-41 Score=308.01 Aligned_cols=296 Identities=18% Similarity=0.243 Sum_probs=220.9
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE-EE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK-VH 96 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~-v~ 96 (369)
.|+|+|.++++.+.+++++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++ +.+ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6999999999999999999999999999999998877754 238999999999999999999884 667 77
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.++|+.. ...+|+|+|++.+....... ..++++||+||+|++.+..+.. +...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLT 225 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEe
Confidence 7777654 24689999999997766431 2348999999999998777653 444443 56789999
Q ss_pred eeCChh-------------------HHHHHHHhcCCCEEE--EecCccc------------------------cccceeE
Q 017573 177 ATMPPE-------------------ALEITRKFMNKPVRI--LVKRDEL------------------------TLEGIKQ 211 (369)
Q Consensus 177 aT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~------------------------~~~~~~~ 211 (369)
|||... ..++...++..+... ....... .......
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 999732 111111111111110 0000000 0000000
Q ss_pred EEE--------------------EccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCH
Q 017573 212 FYV--------------------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 271 (369)
Q Consensus 212 ~~~--------------------~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 271 (369)
.+. .......+...+.+++....++++||||++.+.++.+++.|. +..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCH
Confidence 000 000122356777888887778899999999999999999984 5678999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCc-e--eEEEEeccccHH
Q 017573 272 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-G--VAINFVTRDDER 345 (369)
Q Consensus 272 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~-~--~~~~~~~~~~~~ 345 (369)
.+|.++++.|++|+.+|||+|+++++|+|+|.+++||++++++|+..|.|++||++|.|+. + .++.+++.+..+
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999854 3 444555554433
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.1e-40 Score=304.70 Aligned_cols=322 Identities=19% Similarity=0.229 Sum_probs=242.3
Q ss_pred hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 13 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..|+ +|+|.|..+++.+.+|+ +..++||+|||+++.++++.....+ +.++||+|++.|+.|.++++..++..++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g---~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG---KGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5799 99999999999999998 9999999999999999988433333 3799999999999999999999999999
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcC------CCCCCCccEEEEechhHhh-ccC----------
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SRG---------- 154 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~-~~~---------- 154 (369)
+++..+.|+....... ....++|+|+||..| +.++... ......+.++|+||+|++. +..
T Consensus 153 l~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 9999999987754433 234589999999999 6666543 2445778999999999987 442
Q ss_pred -----cHHHHHHHHhhCCc---------cCcEE-----------------EEEeeCChhHHHH-----HHHhcCCC--EE
Q 017573 155 -----FKDQIYDIFQLLPA---------KVQVG-----------------VFSATMPPEALEI-----TRKFMNKP--VR 196 (369)
Q Consensus 155 -----~~~~~~~~~~~~~~---------~~~~i-----------------~~saT~~~~~~~~-----~~~~~~~~--~~ 196 (369)
+...+..+...+++ ..|+. ++|||.+.-.... ...++... ..
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 56777888888763 45665 6788854211111 11122110 00
Q ss_pred E------Eec-----------------------------C----------------------------------------
Q 017573 197 I------LVK-----------------------------R---------------------------------------- 201 (369)
Q Consensus 197 ~------~~~-----------------------------~---------------------------------------- 201 (369)
+ .++ .
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0 000 0
Q ss_pred ------ccccccceeEEEEEccchhhhHHHHHHHHHh--ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHH
Q 017573 202 ------DELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 273 (369)
Q Consensus 202 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (369)
...+................+...+...+.. ..+.++||||++++.++.+++.|...|+++..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 0000000000001122345577777776654 24578999999999999999999999999999999988888
Q ss_pred HHHHHHHHhcCCCcEEEEecCCcCCCCCC--------CCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccH
Q 017573 274 RDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 344 (369)
Q Consensus 274 r~~~~~~f~~~~~~vli~t~~~~~G~d~~--------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 344 (369)
+..+.+.++.| .|+|||+++++|+|++ +..+||.++.|.+...|.|++||+||.|.+|.+++|++..|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 77666555554 6999999999999999 788999999999999999999999999999999999997764
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.6e-40 Score=306.39 Aligned_cols=319 Identities=18% Similarity=0.127 Sum_probs=228.7
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
+++.+.+.+... ...+.|.|+.+++.+.+++++++.+|||||||++++++++..+... +.++||++|+++|+.|+.+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi~~ 233 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEMEE 233 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHHHH
Confidence 333433334332 3778899998999999999999999999999999988888776542 3489999999999999998
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHH
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 162 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~ 162 (369)
.+.. ..+........ .....+..+.++|.+.+...+... ....+++++|+||||++ +..+...+..+
T Consensus 234 ~l~~------~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i 300 (618)
T 2whx_A 234 ALRG------LPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYI 300 (618)
T ss_dssp HTTT------SCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHH
T ss_pred HhcC------CceeEecccce-----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHH
Confidence 8763 22322111100 011223467788888887665554 45677999999999997 44455566666
Q ss_pred HhhCC-ccCcEEEEEeeCChhHHHHHHHhcC-CCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEE
Q 017573 163 FQLLP-AKVQVGVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 240 (369)
Q Consensus 163 ~~~~~-~~~~~i~~saT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv 240 (369)
...++ +..|++++|||++..... +.. .+..+..... .+.. ....+...+.. ..+++||
T Consensus 301 ~~~l~~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~-------------~~~~--~~~~ll~~l~~-~~~~~LV 360 (618)
T 2whx_A 301 STRVEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE-------------IPER--SWNTGFDWITD-YQGKTVW 360 (618)
T ss_dssp HHHHHHTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC-------------CCSS--CCSSSCHHHHH-CCSCEEE
T ss_pred HHHhcccCccEEEEECCCchhhhh----hhccCCceeeeccc-------------CCHH--HHHHHHHHHHh-CCCCEEE
Confidence 66654 578999999999765332 111 1211111111 0000 00111122222 2579999
Q ss_pred EeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEE-------------
Q 017573 241 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV------------- 307 (369)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v------------- 307 (369)
||++++.++.+++.|++.+.++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 361 F~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~ 435 (618)
T 2whx_A 361 FVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILT 435 (618)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEEC
T ss_pred EECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecc
Confidence 9999999999999999999999999984 678899999999999999999999999997 8888
Q ss_pred -------EEecCCCCccchhhhhcccccCCC-ceeEEEEec---cccHHHHHHHHHHhccccccCC
Q 017573 308 -------INYDLPTQPENYLHRIGRSGRFGR-KGVAINFVT---RDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 308 -------i~~~~~~~~~~~~Q~~GR~~R~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
+.++.|.+..+|.||+||+||.|. .|.+++++. +.+...+..+++.+.....+++
T Consensus 436 ~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 436 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCT
T ss_pred cCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCC
Confidence 556668899999999999999964 899999997 7787788888877655444443
No 42
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.3e-39 Score=304.62 Aligned_cols=300 Identities=16% Similarity=0.219 Sum_probs=189.6
Q ss_pred CCCcHhhhhhhhcccc----C-CcEEEEcCCCChhhHHHHHHHHHhhhcc------CCCccEEEEcCCHHHHHHHH-HHH
Q 017573 17 EKPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYG------LVQCQALVLAPTRELAQQIE-KVM 84 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~----~-~~~li~~~tG~GKT~~~~~~~~~~~~~~------~~~~~~liv~P~~~l~~q~~-~~~ 84 (369)
..||++|.++++.+.+ + +++++++|||+|||++++..+...+..+ ...+++||++|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999998876 4 6689999999999999776666555433 13458999999999999999 777
Q ss_pred HHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHH----cCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 85 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR----RQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~----~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
..+.. .+..+.++. ...+.+|+|+|++.+..... ...+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 76532 233322221 23467999999999987654 223445668999999999986542 24455
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccc-----cccceeEEEE---------------------
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL-----TLEGIKQFYV--------------------- 214 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------------- 214 (369)
.++..++ ..+++++||||..........++..+.......... .+........
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6666665 467899999998544433444444332221110000 0000000000
Q ss_pred -----Eccc----------hhhhHHHHHHHHHh-ccCCCeEEEeCCHhhHHHHHHHHhhCCCe--------eEEecCCCC
Q 017573 215 -----NVEK----------EEWKLETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHT--------VSATHGDMD 270 (369)
Q Consensus 215 -----~~~~----------~~~~~~~l~~~~~~-~~~~k~lv~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~ 270 (369)
.... .....+.+.+.+.. ...+++||||+++++++.+++.|.+.+.. +..+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 0000 00011223333333 34479999999999999999999875432 778888865
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCC
Q 017573 271 QNTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 331 (369)
Q Consensus 271 ~~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 331 (369)
++|.++++.|++|+.+ |+++|+++++|+|+|.+++||++++++|...|.|++||++|.++
T Consensus 483 -~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 -KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp -HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred -HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4799999999998755 77888999999999999999999999999999999999999875
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-37 Score=287.67 Aligned_cols=322 Identities=18% Similarity=0.212 Sum_probs=224.4
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
.|. +|++.|..+++.+.+|+ +..++||+|||++++++++.....+ +.++|++||+.|+.|..+++..++..+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g---~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS---SCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC---CcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 464 99999999999999988 9999999999999999988544333 38999999999999999999999999999
Q ss_pred EEEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEechhHhh-ccC-----------
Q 017573 94 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG----------- 154 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~-~~~----------- 154 (369)
++..+.|+....... ....++|+|+||..| +.++.... .....++++|+||+|++. +..
T Consensus 145 ~v~~i~GG~~~~~r~--~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAKR--EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHHH--HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 999999988754332 334589999999999 67776542 455778999999999987 332
Q ss_pred ----cHHHHHHHHhhCCc--------------------cCcEE------------------------EEEeeCChhHHHH
Q 017573 155 ----FKDQIYDIFQLLPA--------------------KVQVG------------------------VFSATMPPEALEI 186 (369)
Q Consensus 155 ----~~~~~~~~~~~~~~--------------------~~~~i------------------------~~saT~~~~~~~~ 186 (369)
+...+..+...+++ ..|+. ++|||.+.-....
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 34556666666653 33332 5677753211000
Q ss_pred -----HHHhcCCC-------------------------------------EEEEecCcccccccee--------------
Q 017573 187 -----TRKFMNKP-------------------------------------VRILVKRDELTLEGIK-------------- 210 (369)
Q Consensus 187 -----~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~-------------- 210 (369)
...++... ..+.+..+......+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 00011000 0111111111111111
Q ss_pred --------------------------------EEEEEccchhhhHHHHHHHHHh-c-cCCCeEEEeCCHhhHHHHHHHHh
Q 017573 211 --------------------------------QFYVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMR 256 (369)
Q Consensus 211 --------------------------------~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lv~~~~~~~~~~~~~~l~ 256 (369)
...........+...+...+.. + .+.++||||++++.++.+++.|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 1011123445577777776654 2 45689999999999999999999
Q ss_pred hCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCC--------------------------------
Q 017573 257 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV-------------------------------- 304 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~-------------------------------- 304 (369)
+.|+++..+||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999888888888888877 599999999999999863
Q ss_pred -----cEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 305 -----SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 305 -----~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
.+||.++.|.|...|.|++||+||.|.+|.+++|++..|.-
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999987643
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.5e-37 Score=283.53 Aligned_cols=324 Identities=20% Similarity=0.259 Sum_probs=245.6
Q ss_pred hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 13 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..|+ +|++.|..+++.+.+|+ +..++||+|||+++.++++.....+ ..++||+|++.|+.|..+++..+...++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g---~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG---NGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4687 99999999999999888 9999999999999999986433333 3799999999999999999999999999
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcC------CCCCCCccEEEEechhHhh-cc-----------
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SR----------- 153 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~-~~----------- 153 (369)
+++..+.|+........ ...++|+++||..| +.++... ......+.++|+||+|++. +.
T Consensus 181 Lsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 99999999887543332 33589999999999 6777654 3455678999999999987 32
Q ss_pred ----CcHHHHHHHHhhCC---------ccCcEE-----------------EEEeeCChhHHHH-----HHHhcCCCE---
Q 017573 154 ----GFKDQIYDIFQLLP---------AKVQVG-----------------VFSATMPPEALEI-----TRKFMNKPV--- 195 (369)
Q Consensus 154 ----~~~~~~~~~~~~~~---------~~~~~i-----------------~~saT~~~~~~~~-----~~~~~~~~~--- 195 (369)
++...+..+...++ +..++. ++|||.+.-.... ...++....
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 36678888888887 566776 6788865311111 111221110
Q ss_pred -----EEEecC-----------------------------ccccc-----------------------------------
Q 017573 196 -----RILVKR-----------------------------DELTL----------------------------------- 206 (369)
Q Consensus 196 -----~~~~~~-----------------------------~~~~~----------------------------------- 206 (369)
.+.+.. +....
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 000000 00000
Q ss_pred -----------cceeEEEEEccchhhhHHHHHHHHHh-c-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHH
Q 017573 207 -----------EGIKQFYVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 273 (369)
Q Consensus 207 -----------~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (369)
...............+...+...+.. + .+.++||||++++.++.+++.|.+.|+++..+||+....+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 00000001122344567777666643 2 4568999999999999999999999999999999988777
Q ss_pred HHHHHHHHhcCCCcEEEEecCCcCCCCCCCC-------------------------------------------------
Q 017573 274 RDIIMREFRSGSSRVLITTDLLARGIDVQQV------------------------------------------------- 304 (369)
Q Consensus 274 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~------------------------------------------------- 304 (369)
+..+.+.|+.| .|+|||+++++|+|++..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 77777777776 599999999999999964
Q ss_pred ---cEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 017573 305 ---SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 346 (369)
Q Consensus 305 ---~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 346 (369)
.+||.++.|.|...|.|++||+||.|.+|.+++|++..|.-+
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 489999999999999999999999999999999999877643
No 45
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.3e-39 Score=312.20 Aligned_cols=333 Identities=17% Similarity=0.133 Sum_probs=231.2
Q ss_pred CCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE
Q 017573 17 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 94 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 94 (369)
.+|+|||.+++..+... .++++.++||+|||.+++..+...+..+..+ ++|||||+ +|+.||.+++.+.+ +++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~-rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAE-RVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCC-CEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 47999999999988764 5899999999999999988877766655443 89999999 99999999997765 455
Q ss_pred EEEEECCcchHHHHH--HHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhccCcH--HHHHHHHhhCCcc
Q 017573 95 VHACVGGTSVREDQR--ILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAK 169 (369)
Q Consensus 95 v~~~~~~~~~~~~~~--~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~--~~~~~~~~~~~~~ 169 (369)
+..++++........ ......+|+|+|++.+...... ..+....+++||+||||++.+.... .....+.......
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 555544332211111 1123568999999988542111 1122345899999999999754422 1122222222345
Q ss_pred CcEEEEEeeCChh----HHHHHH----------------------------HhcCC------------------------
Q 017573 170 VQVGVFSATMPPE----ALEITR----------------------------KFMNK------------------------ 193 (369)
Q Consensus 170 ~~~i~~saT~~~~----~~~~~~----------------------------~~~~~------------------------ 193 (369)
.+++++||||..+ ...+.. .+...
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 5689999999531 111100 00000
Q ss_pred ----------------------------CEEEEecCc---cccccceeEEEEE---------------------------
Q 017573 194 ----------------------------PVRILVKRD---ELTLEGIKQFYVN--------------------------- 215 (369)
Q Consensus 194 ----------------------------~~~~~~~~~---~~~~~~~~~~~~~--------------------------- 215 (369)
...+..... .............
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 000000000 0000001111111
Q ss_pred -----------------ccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhh-CCCeeEEecCCCCHHHHHHH
Q 017573 216 -----------------VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDII 277 (369)
Q Consensus 216 -----------------~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~r~~~ 277 (369)
......+...+.+++....++++||||++.+.++.+++.|.. .+.++..+||+++..+|.++
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 112234677788888887788999999999999999999994 59999999999999999999
Q ss_pred HHHHhcCC--CcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHh
Q 017573 278 MREFRSGS--SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 354 (369)
Q Consensus 278 ~~~f~~~~--~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (369)
++.|++|+ ++|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.|+.+.++++.........+.+.+.+
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999998777665544333334444444
No 46
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.1e-37 Score=286.36 Aligned_cols=311 Identities=16% Similarity=0.198 Sum_probs=214.9
Q ss_pred CCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..|+|||.++++.+. .++++++.++||+|||++++..+......+ ...++|||||. +|+.||.+++.++...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~-~l~~qw~~e~~~~~~~-- 111 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPL-SVLKNWEEELSKFAPH-- 111 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECS-TTHHHHHHHHHHHCTT--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccH-HHHHHHHHHHHHHCCC--
Confidence 369999999998763 578999999999999999876665544333 33489999995 6899999999998753
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcE
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 172 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
.++...+++... ....+++|+|+||+.+..... +....+++||+||||++.+.. ......+..++ ..+.
T Consensus 112 ~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~ 180 (500)
T 1z63_A 112 LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYR 180 (500)
T ss_dssp SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEE
T ss_pred ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcE
Confidence 455555554421 122457999999999865432 223458999999999997554 23444555554 4567
Q ss_pred EEEEeeCChhHHHH-------------------------------------HHHhcCCCEEEEe-cCc----ccccccee
Q 017573 173 GVFSATMPPEALEI-------------------------------------TRKFMNKPVRILV-KRD----ELTLEGIK 210 (369)
Q Consensus 173 i~~saT~~~~~~~~-------------------------------------~~~~~~~~~~~~~-~~~----~~~~~~~~ 210 (369)
+++||||..+.... ....+. +..+.. ..+ ...+....
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp~~~~ 259 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLPDKIE 259 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSCSEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCCCCeE
Confidence 99999996432111 111111 111111 100 00111111
Q ss_pred -EEEEEccc------------------------------------------------------hhhhHHHHHHHHHhc--
Q 017573 211 -QFYVNVEK------------------------------------------------------EEWKLETLCDLYETL-- 233 (369)
Q Consensus 211 -~~~~~~~~------------------------------------------------------~~~~~~~l~~~~~~~-- 233 (369)
..+..... ...+...+.+++...
T Consensus 260 ~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~ 339 (500)
T 1z63_A 260 TNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALD 339 (500)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHc
Confidence 11111111 112334444555443
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEecCCcCCCCCCCCcEEEEe
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTDLLARGIDVQQVSLVINY 310 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~~~~~G~d~~~~~~vi~~ 310 (369)
.+.|+|||+++...++.+.+.|... +..+..++|+++..+|.++++.|+++ +.+ +|++|.++++|+|+|.+++||++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 5679999999999999999999885 88999999999999999999999988 455 78899999999999999999999
Q ss_pred cCCCCccchhhhhcccccCCCceeE--EEEecccc
Q 017573 311 DLPTQPENYLHRIGRSGRFGRKGVA--INFVTRDD 343 (369)
Q Consensus 311 ~~~~~~~~~~Q~~GR~~R~~~~~~~--~~~~~~~~ 343 (369)
++|||+..+.|++||++|.|+.+.+ +.++..+.
T Consensus 420 d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 420 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp SCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999999999999987655 44555554
No 47
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.7e-38 Score=286.25 Aligned_cols=287 Identities=18% Similarity=0.155 Sum_probs=206.8
Q ss_pred CCCCCcHhhhhhhhccccCCcE-EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDV-IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~-li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
|+.+++|.|+ +++.++++++. ++.+|||||||++++++++..+... +++++|++|+++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6788999985 78999988776 9999999999998888887665432 2489999999999999999875 23
Q ss_pred EEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHH-hhCCccCcE
Q 017573 94 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF-QLLPAKVQV 172 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (369)
.+......... .......+.++|++.+.+.+... ....+++++|+||+|++ +..+......+. ...++..++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33322221110 11234578899999988777654 45677899999999976 222122222222 223457899
Q ss_pred EEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHH
Q 017573 173 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLT 252 (369)
Q Consensus 173 i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~ 252 (369)
++||||++...... +...+..+..... ..... + . .+...+.. ..+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~~----~------~----~~~~~l~~-~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIERE-IPERS----W------N----TGFDWITD-YQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEECC-CCSSC----C------S----SSCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCcc-CCchh----h------H----HHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 99999997643221 1122222221110 00000 0 0 01122222 2569999999999999999
Q ss_pred HHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEec--------------------C
Q 017573 253 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------L 312 (369)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--------------------~ 312 (369)
+.|++.+..+..+|+++ +.++++.|++|+.+|||||+++++|+|+|+ ++||.++ .
T Consensus 206 ~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 99999999999999975 357899999999999999999999999999 9999887 8
Q ss_pred CCCccchhhhhcccccCCC-ceeEEEEecc
Q 017573 313 PTQPENYLHRIGRSGRFGR-KGVAINFVTR 341 (369)
Q Consensus 313 ~~~~~~~~Q~~GR~~R~~~-~~~~~~~~~~ 341 (369)
|.+..+|.||+||+||.|+ .|.++++...
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 8999999999999999998 7888888754
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-38 Score=297.28 Aligned_cols=300 Identities=20% Similarity=0.180 Sum_probs=209.2
Q ss_pred CCcHhhh-----hhhhccc------cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 18 KPSAIQQ-----RGIVPFC------KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 18 ~~~~~Q~-----~~~~~~~------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
.|+++|+ ++++.++ +++++++++|||+|||++++++++..+... +.+++|++|+++|+.|+.+.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhc
Confidence 8999999 9999888 899999999999999999988888775543 23899999999999999998875
Q ss_pred hccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC
Q 017573 87 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 166 (369)
Q Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 166 (369)
+ ++. ...+... .....+.-+-+.+...+.+.+... ....+++++|+||+|++. ..+......+....
T Consensus 293 ~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 293 L----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTD-PASIAARGYIATRV 359 (673)
T ss_dssp S----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHH
T ss_pred C----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccC-ccHHHHHHHHHHhc
Confidence 4 221 1111000 011122334555666665555543 556779999999999971 11122222333333
Q ss_pred -CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCH
Q 017573 167 -PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 245 (369)
Q Consensus 167 -~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~ 245 (369)
+...++++||||+++....+... ..++. ........ ......+. .+.. ..+++||||+++
T Consensus 360 ~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~--------------~v~~~~~~-~~~~~~l~-~l~~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 360 EAGEAAAIFMTATPPGTSDPFPDT--NSPVH--------------DVSSEIPD-RAWSSGFE-WITD-YAGKTVWFVASV 420 (673)
T ss_dssp HTTSCEEEEECSSCTTCCCSSCCC--SSCEE--------------EEECCCCS-SCCSSCCH-HHHS-CCSCEEEECSSH
T ss_pred cccCCcEEEEcCCCChhhhhhccc--CCceE--------------EEeeecCH-HHHHHHHH-HHHh-CCCCEEEEECCH
Confidence 25789999999997653211100 01111 11100111 00111111 2222 467999999999
Q ss_pred hhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----------------
Q 017573 246 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN---------------- 309 (369)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~---------------- 309 (369)
+.++.+++.|++.+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 421 ~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 421 KMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999999999999999994 688999999999999999999999999999 999997
Q ss_pred ----ecCCCCccchhhhhcccccC-CCceeEEEEe---ccccHHHHHHHHHHhcc
Q 017573 310 ----YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDERMLFDIQKFYNV 356 (369)
Q Consensus 310 ----~~~~~~~~~~~Q~~GR~~R~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (369)
++.|.+..+|.|++||+||. ++.|.+++++ ++.+...+..++..+..
T Consensus 496 ~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 496 VILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp EEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred ceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 45788889999999999999 7899999996 56676666666665533
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.3e-39 Score=292.19 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=194.2
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 108 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 108 (369)
.+.+++++++++|||||||++++++++..+... +++++|++|+++|+.|+.+.+..+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~~---- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFSA---- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccccee----
Confidence 467899999999999999999988888866543 238999999999999999988743 22222211100
Q ss_pred HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC-CccCcEEEEEeeCChhHHHHH
Q 017573 109 RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEIT 187 (369)
Q Consensus 109 ~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~ 187 (369)
....+.-+-..+...+...+. ......+++++|+||+|++ +..+......+.... +...++++||||+++....+.
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFP 148 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred -ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh
Confidence 000111122333333333222 2345677899999999997 222222222222222 357899999999976543211
Q ss_pred HHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecC
Q 017573 188 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (369)
.. ..+. .......... .....+. .+.. ..++++|||++++.++.+++.|+..+.++..+||
T Consensus 149 ~~--~~~~--------------~~~~~~~~~~-~~~~~~~-~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg 209 (440)
T 1yks_A 149 HS--NGEI--------------EDVQTDIPSE-PWNTGHD-WILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 209 (440)
T ss_dssp CC--SSCE--------------EEEECCCCSS-CCSSSCH-HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS
T ss_pred hc--CCCe--------------eEeeeccChH-HHHHHHH-HHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 10 0111 1111111110 0111111 1222 2579999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE-------------------ecCCCCccchhhhhccccc
Q 017573 268 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------------------YDLPTQPENYLHRIGRSGR 328 (369)
Q Consensus 268 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------------------~~~~~~~~~~~Q~~GR~~R 328 (369)
++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.|++||+||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 3578899999999999999999999999999 999986 7788999999999999999
Q ss_pred C-CCceeEEEEe---ccccHHHHHHHHHHhccccccCC
Q 017573 329 F-GRKGVAINFV---TRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 329 ~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
. ++.|.|++++ ++.+...+..++..+.....+++
T Consensus 285 ~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 285 NPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp CTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred CCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 7 6899999996 67777777878777654444443
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-37 Score=295.89 Aligned_cols=328 Identities=16% Similarity=0.216 Sum_probs=236.4
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhcccc-CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
+++++.+.+.++..+ ..|.+.|++++..++. ++++++.||||+|||+..-..+.........+.++++++|+++++.|
T Consensus 77 ~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q 155 (773)
T 2xau_A 77 REFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMS 155 (773)
T ss_dssp SBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHH
T ss_pred cCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHH
Confidence 578999999998887 7899999999988775 56799999999999984322222221111123369999999999999
Q ss_pred HHHHHHHhcc-ccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhH-hhccC-cH
Q 017573 80 IEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRG-FK 156 (369)
Q Consensus 80 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~-~~ 156 (369)
+.+.+.+... ..+..+........ ....+.+|+++|++.+.+.+... ....+++++|+||+|. ..+.. ..
T Consensus 156 ~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~ 228 (773)
T 2xau_A 156 VAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILM 228 (773)
T ss_dssp HHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHH
T ss_pred HHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHH
Confidence 9887765432 22333332211111 01235789999999998877664 4567789999999996 33322 22
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhh---hHHHHHHHHHhc
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW---KLETLCDLYETL 233 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 233 (369)
..+..+.... +..+++++|||++.+ .+ ..++.....+...... ..+..++........ ....+..++...
T Consensus 229 ~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 229 GLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 3344444433 477899999999642 33 3445443333332222 223444433333222 233444444445
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhh-----------CCCeeEEecCCCCHHHHHHHHHHHh-----cCCCcEEEEecCCcC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRS-----------RDHTVSATHGDMDQNTRDIIMREFR-----SGSSRVLITTDLLAR 297 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vli~t~~~~~ 297 (369)
..+++|||++++++++.+++.|.+ .+..+..+||+++.++|.++++.|. +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 678999999999999999999975 5778999999999999999999999 999999999999999
Q ss_pred CCCCCCCcEEEEecC------------------CCCccchhhhhcccccCCCceeEEEEeccccH
Q 017573 298 GIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 344 (369)
Q Consensus 298 G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 344 (369)
|+|+|++++||.++. |.|..+|.||+||+||. +.|.|+.++++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999877 78999999999999999 88999999976554
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.4e-38 Score=286.93 Aligned_cols=292 Identities=20% Similarity=0.209 Sum_probs=214.8
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
.++++|+++++.+.++++++++||||+|||.++.+++++. +.+++|++|+++|+.|+.+.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 4677888888888889999999999999999888777652 2389999999999999999887654 344555
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCc--EEEE
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVF 175 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 175 (369)
..++.. ...+.+|+|+||+.| +.+..+...+++++|+||+|.+ +.++...+..+.+.++...+ ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEE
Confidence 555543 345689999999997 4566677778999999999865 44556677788888876665 6778
Q ss_pred EeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHH
Q 017573 176 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 255 (369)
Q Consensus 176 saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l 255 (369)
|||++.... ...+.......... ..+ ....... . +.....+++||||++++.++.+++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~~--~~i----~~~~~~~-~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSNT--GEI----PFYGKAI-P-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBSC--SSE----EETTEEE-C-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeeccc--chh----HHHHhhh-h-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999976311 11111111000000 000 0000000 0 12335679999999999999999999
Q ss_pred hhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE----------ec-----------CCC
Q 017573 256 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----------YD-----------LPT 314 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----------~~-----------~~~ 314 (369)
++.+..+..+||++++++ |.++..+|||+|+++++|+|+| ++.||+ ++ .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998875 4556669999999999999997 999984 44 788
Q ss_pred CccchhhhhcccccCCCceeEEEEeccccHHH--H--HHHHHHhccccc
Q 017573 315 QPENYLHRIGRSGRFGRKGVAINFVTRDDERM--L--FDIQKFYNVVIE 359 (369)
Q Consensus 315 ~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 359 (369)
+..+|.||+||+|| |+.|. +.++++.+... + ..+.+..+..+.
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~ 535 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCA 535 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcc
Confidence 89999999999999 89999 88988776554 3 445555554443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.8e-36 Score=271.21 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=186.8
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
+++++++++|||+|||.++++++++.+... +.+++|++|+++|+.|+.+.+. +..+....++... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 368999999999999999988888554432 2389999999999999988775 3445444443221 11
Q ss_pred ccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhC-CccCcEEEEEeeCChhHHHHHHHh
Q 017573 112 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKF 190 (369)
Q Consensus 112 ~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~ 190 (369)
..+..+.++|...+.+.+.. .....+++++|+||+|++ +..+......+.... ++..++++|||||++.... +
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~----~ 141 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA----F 141 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS----S
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh----h
Confidence 22345777788888766665 455777999999999997 322223333333332 4578999999999864221 1
Q ss_pred cCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCC
Q 017573 191 MNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 270 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (369)
... ...+.......+. .....+...+.. ..++++|||+++++++.+++.|++.+..+..+||+
T Consensus 142 ~~~------------~~~i~~~~~~~~~--~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 PPS------------NSPIIDEETRIPD--KAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp CCC------------SSCCEEEECCCCS--SCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred cCC------------CCceeeccccCCH--HHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 100 0001110000111 011111222333 25689999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcE-----------------EEEecCCCCccchhhhhcccccCCC-c
Q 017573 271 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL-----------------VINYDLPTQPENYLHRIGRSGRFGR-K 332 (369)
Q Consensus 271 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~-----------------vi~~~~~~~~~~~~Q~~GR~~R~~~-~ 332 (369)
+|.++++.|++|+.+|||||+++++|+|+| +.+ ++.++.|.+..+|.|++||+||.|+ .
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 477899999999999999999999999999 555 4667788899999999999999985 4
Q ss_pred eeEEEEec
Q 017573 333 GVAINFVT 340 (369)
Q Consensus 333 ~~~~~~~~ 340 (369)
+.++++..
T Consensus 282 ~~~~~~~~ 289 (431)
T 2v6i_A 282 GDIYAYSG 289 (431)
T ss_dssp CCEEEECS
T ss_pred CeEEEEcC
Confidence 56666653
No 53
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.2e-35 Score=239.24 Aligned_cols=197 Identities=38% Similarity=0.629 Sum_probs=178.6
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++++.+.|.++|+..|+++|+++++.+.+++++++.+|||+|||++++++++..+.....+++++|++|+++|+.|+
T Consensus 8 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 8 YCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp SCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998876655566899999999999999
Q ss_pred HHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+.+.++.... +..+....|+............+++|+|+||+.+...+.+......+++++|+||+|++.+.++...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l 167 (206)
T 1vec_A 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIM 167 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHH
Confidence 99999988766 77888888888776666666678899999999999999888778888999999999999988899999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEE
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRI 197 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~ 197 (369)
..+...+++..|++++|||++.+..+....++.+|..+
T Consensus 168 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 168 EDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999899999999999999999999999888654
No 54
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-35 Score=274.36 Aligned_cols=319 Identities=17% Similarity=0.169 Sum_probs=219.8
Q ss_pred CCcHhhhhhhhccc---------cCCcEEEEcCCCChhhHHHHHHHHHhhhccC----CCccEEEEcCCHHHHHHHHHHH
Q 017573 18 KPSAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~---------~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~l~~q~~~~~ 84 (369)
.|+|||.+++..+. .+.++++.++||+|||+.++..+...+..++ ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999998874 4567999999999999998887776665442 12369999996 8999999999
Q ss_pred HHhccccCcEEEEEECCcchHHHHH---HHc-----cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH
Q 017573 85 RALGDYLGVKVHACVGGTSVREDQR---ILQ-----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~---~~~-----~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
.++... .+.+...+++........ ... ...+|+|+|++.+..... .+....|++||+||+|++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC--
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh--
Confidence 998765 455555555544322211 111 147899999999976432 2444568999999999986544
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHH-------------------HHHHhcC-------------------------
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALE-------------------ITRKFMN------------------------- 192 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~-------------------~~~~~~~------------------------- 192 (369)
......+..++ ....+++||||..+... +...+..
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 23333334444 44679999999643210 0000000
Q ss_pred ----CCEEEEecCcc---ccccceeEE-EEEcc-----------------------------------------------
Q 017573 193 ----KPVRILVKRDE---LTLEGIKQF-YVNVE----------------------------------------------- 217 (369)
Q Consensus 193 ----~~~~~~~~~~~---~~~~~~~~~-~~~~~----------------------------------------------- 217 (369)
.+......... ..+...... +....
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 00000000000 000011100 00000
Q ss_pred ----------------------------chhhhHHHHHHHHHh---ccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEec
Q 017573 218 ----------------------------KEEWKLETLCDLYET---LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 266 (369)
Q Consensus 218 ----------------------------~~~~~~~~l~~~~~~---~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~ 266 (369)
....+...+..++.. ..+.|+|||++....++.+.+.|...++.+..++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 011233344444433 3467999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCc---EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCcee--EEEEecc
Q 017573 267 GDMDQNTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTR 341 (369)
Q Consensus 267 ~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~--~~~~~~~ 341 (369)
|+++.++|.++++.|++++.. +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+... ++.++..
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 999999999999999998754 78899999999999999999999999999999999999999997754 4445555
Q ss_pred cc
Q 017573 342 DD 343 (369)
Q Consensus 342 ~~ 343 (369)
..
T Consensus 528 ~t 529 (644)
T 1z3i_X 528 GT 529 (644)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-36 Score=286.74 Aligned_cols=330 Identities=18% Similarity=0.215 Sum_probs=230.6
Q ss_pred CCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
.+|+|||.+++..+. .++++++.++||+|||++++..+...+.......++||||| .+++.||.+++.++.. +
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~ 311 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--D 311 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--T
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--C
Confidence 479999999998765 78999999999999999987777666544444448999999 6889999999999875 4
Q ss_pred cEEEEEECCcchHHHHHH------------HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 93 VKVHACVGGTSVREDQRI------------LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~------------~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
+++...+|+......... ....++|+|+|++.+...... +....|++||+||||++.+.. ....
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~ 387 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLY 387 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHH
Confidence 566666666553332211 123578999999999764332 223358999999999996543 3445
Q ss_pred HHHhhCCccCcEEEEEeeCChhH----HHHHHHhcCC-----------------------------CEEEEecCccc--c
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEA----LEITRKFMNK-----------------------------PVRILVKRDEL--T 205 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~----~~~~~~~~~~-----------------------------~~~~~~~~~~~--~ 205 (369)
..+..++ ....+++||||..+. ..++..+... +.......... .
T Consensus 388 ~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 5555564 445788999994321 1111111110 00000000000 0
Q ss_pred ccceeEE--EEEccc-----------------------------------------------------------------
Q 017573 206 LEGIKQF--YVNVEK----------------------------------------------------------------- 218 (369)
Q Consensus 206 ~~~~~~~--~~~~~~----------------------------------------------------------------- 218 (369)
.+..... ++....
T Consensus 467 LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~ 546 (800)
T 3mwy_W 467 LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTREN 546 (800)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHH
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHH
Confidence 0011111 111000
Q ss_pred -------hhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCC---
Q 017573 219 -------EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS--- 286 (369)
Q Consensus 219 -------~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--- 286 (369)
...++..+..++... .+.|+|||+.....+..+.+.|...++.+..++|.++..+|.++++.|++++.
T Consensus 547 ~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~ 626 (800)
T 3mwy_W 547 VLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF 626 (800)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCC
T ss_pred HHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCce
Confidence 122455566666554 45699999999999999999999999999999999999999999999998654
Q ss_pred cEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCcee--EEEEeccc--cHHHHHHHHHHh
Q 017573 287 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRD--DERMLFDIQKFY 354 (369)
Q Consensus 287 ~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~--~~~~~~~~--~~~~~~~~~~~~ 354 (369)
.+|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+... ++.+++.. +..+++...+..
T Consensus 627 v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 627 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp CEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred EEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999997754 45556655 444555444443
No 56
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.5e-37 Score=277.40 Aligned_cols=273 Identities=20% Similarity=0.211 Sum_probs=191.0
Q ss_pred hhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHH
Q 017573 27 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE 106 (369)
Q Consensus 27 ~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 106 (369)
...+.+++++++.+|||+|||++++++++..+... +++++|++|+++|+.|+.+.+.. ..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTTT------SCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc--
Confidence 44456789999999999999999988888776532 23899999999999999998862 233222111110
Q ss_pred HHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHh-----hccCcHHHHHHHHhhCCccCcEEEEEeeCCh
Q 017573 107 DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-----LSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 181 (369)
Q Consensus 107 ~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~-----~~~~~~~~~~~~~~~~~~~~~~i~~saT~~~ 181 (369)
....+..+.++|...+...+... ....+++++|+||+|+. ...++.... ..++..|+++||||++.
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~-----~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK-----VELGEAAAIFMTATPPG 155 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH-----HHTTSCEEEEECSSCTT
T ss_pred ---CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH-----hccCCccEEEEEcCCCc
Confidence 01233457788888877666554 45677899999999983 222222211 11357899999999986
Q ss_pred hHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCe
Q 017573 182 EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 261 (369)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~ 261 (369)
....+... ..++..... ..+.. ....+..++... .+++||||++++.++.+++.|+..+..
T Consensus 156 ~~~~~~~~--~~pi~~~~~--------------~~~~~--~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~ 216 (459)
T 2z83_A 156 TTDPFPDS--NAPIHDLQD--------------EIPDR--AWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKK 216 (459)
T ss_dssp CCCSSCCC--SSCEEEEEC--------------CCCSS--CCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred chhhhccC--CCCeEEecc--------------cCCcc--hhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCc
Confidence 53211110 122221110 00000 000011222222 579999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEE--------------------ecCCCCccchhh
Q 017573 262 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------------------YDLPTQPENYLH 321 (369)
Q Consensus 262 ~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--------------------~~~~~~~~~~~Q 321 (369)
+..+|++ +|.++++.|++|+.+|||||+++++|+|+|+ +.||. ++.|.+..+|.|
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~Q 291 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQ 291 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHH
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHH
Confidence 9999995 5778899999999999999999999999999 99998 568999999999
Q ss_pred hhcccccCCC-ceeEEEEeccc
Q 017573 322 RIGRSGRFGR-KGVAINFVTRD 342 (369)
Q Consensus 322 ~~GR~~R~~~-~~~~~~~~~~~ 342 (369)
|+||+||.|+ .|.+++++...
T Consensus 292 R~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 292 RRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHTTSSCCTTCCCEEEEECSCC
T ss_pred hccccCCCCCCCCeEEEEEccc
Confidence 9999999987 89999999875
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.9e-35 Score=245.28 Aligned_cols=202 Identities=32% Similarity=0.435 Sum_probs=183.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-----CCCccEEEEcCCHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAPTRE 75 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~liv~P~~~ 75 (369)
++|++.+.+.+.++||.+|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+++
T Consensus 34 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 34 ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE 113 (242)
T ss_dssp TTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHH
Confidence 5799999999999999999999999999999999999999999999999999999887632 23458999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCc
Q 017573 76 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 76 l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
|+.|+.+.++++....++.+....|+.........+..+++|+|+||+.+...+........+++++|+||||++.+.++
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~ 193 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGF 193 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCc
Confidence 99999999999988888999999999887777666777899999999999999998888888899999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 202 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~ 202 (369)
...+..++..+++..|++++|||+++....+...++.++..+.....
T Consensus 194 ~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 194 EPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999988876543
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=242.29 Aligned_cols=199 Identities=34% Similarity=0.524 Sum_probs=180.2
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
+||++.+.+.|+.+|+..|+++|+++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++|+.|+
T Consensus 48 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998877666556899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+.++++....++.+..+.|+............+++|+|+||+++...+.+ .......++++|+||||++.+.++...+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l 207 (249)
T 3ber_A 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV 207 (249)
T ss_dssp HHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHH
Confidence 999999988888899999998876666666667899999999999988876 4456778999999999999999999999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEe
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 199 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~ 199 (369)
..++..+++..+++++|||++....++...++.+|..+.+
T Consensus 208 ~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 208 DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999989999999999999999999999999987654
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-35 Score=241.62 Aligned_cols=201 Identities=33% Similarity=0.502 Sum_probs=178.2
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.++|.++|+..|+++|+++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++|+.|+
T Consensus 9 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 9 FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998887655566899999999999999
Q ss_pred HHHHHHhcccc----CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcH
Q 017573 81 EKVMRALGDYL----GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 156 (369)
Q Consensus 81 ~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~ 156 (369)
.+.+.++.... +..+....|+.........+..+++|+|+||+.+...+.........++++|+||+|.+.++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~ 168 (219)
T 1q0u_A 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFI 168 (219)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCH
T ss_pred HHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChH
Confidence 99999987665 67788888877655444444457899999999999999887777788999999999999999999
Q ss_pred HHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecC
Q 017573 157 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR 201 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~ 201 (369)
..+..+...+++..|++++|||++.+..+....++.+|..+....
T Consensus 169 ~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 169 TDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999998999999999999999999999999998776543
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.5e-35 Score=240.05 Aligned_cols=201 Identities=62% Similarity=0.954 Sum_probs=172.2
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.+.|.++|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+++++|++|+++|+.|+
T Consensus 19 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 19 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp GTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999998887666666999999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
.+.+.++....+..+....|+.........+. .++|+|+||+.+...+.+......+++++|+||||++.+.++...+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~ 177 (224)
T 1qde_A 99 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIY 177 (224)
T ss_dssp HHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHH
Confidence 99999998877888888888776555444333 38999999999999998888888889999999999999989999999
Q ss_pred HHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 202 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~ 202 (369)
.+...+++..|++++|||++.+..++...++..|..+....+
T Consensus 178 ~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 178 QIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999887765443
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.7e-35 Score=241.52 Aligned_cols=199 Identities=70% Similarity=1.077 Sum_probs=170.7
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.++|.++||..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++|+.|+
T Consensus 35 l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 35 MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 114 (237)
T ss_dssp SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998876655556899999999999999
Q ss_pred HHHHHHhccccCcEEEEEECCcchHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHH
Q 017573 81 EKVMRALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 159 (369)
Q Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~ 159 (369)
.+.++++....+..+....++.........+. ..++|+|+||+.+...+.+.......++++|+||||++.+.++...+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l 194 (237)
T 3bor_A 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 194 (237)
T ss_dssp HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHH
Confidence 99999998877888888887766544433333 34899999999999999888777888999999999999988899999
Q ss_pred HHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEe
Q 017573 160 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 199 (369)
Q Consensus 160 ~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~ 199 (369)
..++..+++..|++++|||++++..++...++.+|..+.+
T Consensus 195 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 195 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999989999999999999999999999998877654
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.6e-34 Score=268.51 Aligned_cols=290 Identities=17% Similarity=0.187 Sum_probs=209.1
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 108 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 108 (369)
..+++++++++||||||||..++..+.. .. ..+|++|+++|+.|+++.+.+. +.++....|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~~----~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYFS----AK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHH----SS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHh----cC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 3457789999999999999854443332 22 5699999999999999999886 6778888887653100
Q ss_pred HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCC-ccCcEEEEEeeCChhHHHHH
Q 017573 109 RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEIT 187 (369)
Q Consensus 109 ~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~i~~saT~~~~~~~~~ 187 (369)
.-.+..+++++|++.+. ....++++|+||+|++.+.++...+..++..++ ...+++++|||. +....+.
T Consensus 219 -TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~ 288 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELM 288 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHH
T ss_pred -CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHH
Confidence 00123679999986553 235579999999999988888888888888887 677889999994 2333333
Q ss_pred HHhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecC
Q 017573 188 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (369)
.. ......+........ ....... . ..+... .+..+|||+++++++.+++.|.+.+..+..+||
T Consensus 289 ~~-~~~~~~v~~~~r~~~------l~~~~~~----l----~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 289 YT-TGEEVEVRDYKRLTP------ISVLDHA----L----ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp HH-HTCCEEEEECCCSSC------EEECSSC----C----CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred Hh-cCCceEEEEeeecch------HHHHHHH----H----HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 32 333333322111100 0000000 0 011112 245588999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhc--CCCcEEEEecCCcCCCCCCCCcEEEEecC--------------CCCccchhhhhcccccCCC
Q 017573 268 DMDQNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL--------------PTQPENYLHRIGRSGRFGR 331 (369)
Q Consensus 268 ~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------------~~~~~~~~Q~~GR~~R~~~ 331 (369)
++++++|.++++.|++ |..+|||||+++++|+|+ +++.||+++. |.+..+|.||+||+||.|+
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 9999999999999999 889999999999999999 8999999998 6789999999999999986
Q ss_pred c---eeEEEEeccccHHHHHHHHHHhcccc
Q 017573 332 K---GVAINFVTRDDERMLFDIQKFYNVVI 358 (369)
Q Consensus 332 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (369)
. |.|+.+ .+.+...++.+.......+
T Consensus 432 ~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i 460 (677)
T 3rc3_A 432 RFKEGEVTTM-NHEDLSLLKEILKRPVDPI 460 (677)
T ss_dssp SCSSEEEEES-STTHHHHHHHHHHSCCCCC
T ss_pred CCCCEEEEEE-ecchHHHHHHHHhcCcchh
Confidence 5 555544 3444445555544444333
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=238.25 Aligned_cols=197 Identities=31% Similarity=0.437 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc------CCCccEEEEcCCH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------LVQCQALVLAPTR 74 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~------~~~~~~liv~P~~ 74 (369)
+++++.+.++|.++||.+|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|++
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 4789999999999999999999999999999999999999999999999999988776432 2445899999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC
Q 017573 75 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 154 (369)
Q Consensus 75 ~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~ 154 (369)
+|+.|+.+.+.++. ..+..+....++.........+..+++|+|+||+.+...+........+++++|+||||++.+.+
T Consensus 105 ~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 183 (228)
T 3iuy_A 105 ELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME 183 (228)
T ss_dssp HHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT
T ss_pred HHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc
Confidence 99999999999986 34778888888877666666667788999999999999998888888889999999999999999
Q ss_pred cHHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEE
Q 017573 155 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 198 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 198 (369)
+...+..++..+++..|++++|||+++...+....++.+|..+.
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 184 FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999887654
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.7e-34 Score=237.59 Aligned_cols=197 Identities=40% Similarity=0.621 Sum_probs=174.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.+.|.++||..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+++++|++|+++|+.|+
T Consensus 29 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 29 LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999988876555556999999999999999
Q ss_pred HHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC-cHHH
Q 017573 81 EKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQ 158 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~-~~~~ 158 (369)
.+.++++.... ++++....|+.....+.... .+++|+|+||+.+...+........+++++|+||+|++.+.+ +...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 187 (230)
T 2oxc_A 109 HSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 187 (230)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHH
T ss_pred HHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHH
Confidence 99999987654 78888888888766555444 468999999999999988877777889999999999998886 8899
Q ss_pred HHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEE
Q 017573 159 IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 198 (369)
Q Consensus 159 ~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 198 (369)
+..+...+++..|++++|||++....+....++.+|..+.
T Consensus 188 ~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 188 INWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred HHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999998999999999999888888888888887654
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.9e-34 Score=232.14 Aligned_cols=197 Identities=38% Similarity=0.547 Sum_probs=174.9
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCCHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELA 77 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~~~l~ 77 (369)
+||++.+.+.|.++|+..|+++|+++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+++|+
T Consensus 6 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~ 85 (207)
T 2gxq_A 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELA 85 (207)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHH
Confidence 5899999999999999999999999999999999999999999999999999998887532 2345899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHH
Q 017573 78 QQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKD 157 (369)
Q Consensus 78 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~ 157 (369)
.|+.+.+.++... .++....++............+++|+|+||+.+...+.........++++|+||+|++.+.++..
T Consensus 86 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 163 (207)
T 2gxq_A 86 LQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEE 163 (207)
T ss_dssp HHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHH
Confidence 9999999998754 56777788777666655566678999999999999998887888889999999999999888999
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEe
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 199 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~ 199 (369)
.+..++..+++..|++++|||++.+..++...++.+|..+..
T Consensus 164 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 164 EVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999989999999999999999999999998876653
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=9.5e-35 Score=242.94 Aligned_cols=210 Identities=32% Similarity=0.493 Sum_probs=178.0
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC---------CCccEEEEc
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---------VQCQALVLA 71 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~---------~~~~~liv~ 71 (369)
++|++.+.++|..+|+..|+++|.++++.+.+++++++++|||+|||++++++++..+.... .++++||++
T Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~ 107 (253)
T 1wrb_A 28 LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 107 (253)
T ss_dssp GSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEE
Confidence 47899999999999999999999999999999999999999999999999999998875432 234899999
Q ss_pred CCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 72 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 72 P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
|+++|+.|+.+.++++....++.+....|+.........+..+++|+|+||+.+...+.........++++|+||||++.
T Consensus 108 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 187 (253)
T 1wrb_A 108 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHH
Confidence 99999999999999998877888888888887766666667788999999999999998888888889999999999999
Q ss_pred ccCcHHHHHHHHhh--CCc--cCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCcccccccee
Q 017573 152 SRGFKDQIYDIFQL--LPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 210 (369)
Q Consensus 152 ~~~~~~~~~~~~~~--~~~--~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (369)
+.++...+..++.. .+. ..|++++|||++.+...+...++.++..+...........+.
T Consensus 188 ~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 188 DMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp HTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred hCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 99999999999885 343 678999999999999999999999998887766554444443
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-34 Score=234.34 Aligned_cols=198 Identities=42% Similarity=0.647 Sum_probs=174.4
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
++|++.+.++|.++|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++|+.|+
T Consensus 19 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp SCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998876655555899999999999999
Q ss_pred HHHHHHhcccc-CcEEEEEECCcchHHHHHHHc-cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhc-cCcHH
Q 017573 81 EKVMRALGDYL-GVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKD 157 (369)
Q Consensus 81 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~-~~~~~ 157 (369)
.+.++++.... +.++..+.|+.....+...+. ..++|+|+||+.+...+.........++++|+||||++.+ .++..
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~ 178 (220)
T 1t6n_A 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR 178 (220)
T ss_dssp HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHH
T ss_pred HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHH
Confidence 99999987765 788888888877655544443 4579999999999999988878888899999999999986 46778
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEE
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 198 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~ 198 (369)
.+..+...+++..|++++|||++.+..++...++.+|..+.
T Consensus 179 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 179 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 88888888888999999999999999999999998887653
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=233.27 Aligned_cols=199 Identities=29% Similarity=0.468 Sum_probs=173.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc----CCCccEEEEcCCHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVQCQALVLAPTREL 76 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~----~~~~~~liv~P~~~l 76 (369)
++|++.+.+.|.++|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+++|
T Consensus 30 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L 109 (236)
T 2pl3_A 30 FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTREL 109 (236)
T ss_dssp SCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHH
Confidence 5899999999999999999999999999999999999999999999999999988776431 234489999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEechhHhhccCc
Q 017573 77 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGF 155 (369)
Q Consensus 77 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~ 155 (369)
+.|+.+.+.++....++.+....|+.......... .+++|+|+||+.+...+... ......++++|+||+|++.+.++
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~ 188 (236)
T 2pl3_A 110 AYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGF 188 (236)
T ss_dssp HHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCc
Confidence 99999999999887788888888887765554444 46899999999999887764 45667899999999999999999
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEec
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVK 200 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 200 (369)
...+..++..+++..|++++|||++++..++...++.+|..+...
T Consensus 189 ~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 189 ADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999988877653
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.1e-33 Score=273.40 Aligned_cols=311 Identities=13% Similarity=0.117 Sum_probs=204.4
Q ss_pred CCcHhhhhhhhcccc--------------CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHH
Q 017573 18 KPSAIQQRGIVPFCK--------------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKV 83 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~--------------~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~ 83 (369)
.|||+|.++++.+.+ +++++++++||||||+++ ++++..+.......++|||||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998875 368999999999999997 44455554333334899999999999999999
Q ss_pred HHHhccccCcEEEEEECCcchHHHHHHH-ccCCcEEEeccHHHHHHHHcCC--CCCCCccEEEEechhHhhccCcHHHHH
Q 017573 84 MRALGDYLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFKDQIY 160 (369)
Q Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~iiv~t~~~l~~~~~~~~--~~~~~~~~viiDE~H~~~~~~~~~~~~ 160 (369)
+.++.... ..++.........+ ....+|+|+|+++|...+.... .....+.+||+||||++... ....
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 99876431 12333333333333 3568999999999988776532 12345789999999997532 3345
Q ss_pred HHHhhCCccCcEEEEEeeCChhHH----HHHHHhcCCCEEEEecCccccccceeEE---EEEc-----------c-----
Q 017573 161 DIFQLLPAKVQVGVFSATMPPEAL----EITRKFMNKPVRILVKRDELTLEGIKQF---YVNV-----------E----- 217 (369)
Q Consensus 161 ~~~~~~~~~~~~i~~saT~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------~----- 217 (369)
.+...++ +.+++++||||..... .....+++.++.............+..+ +... .
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 5666665 4689999999974321 1222233332222111000000000000 0000 0
Q ss_pred --------chhhhHHHHH-HHHHhc-----------cCCCeEEEeCCHhhHHHHHHHHhhCC------------Cee-EE
Q 017573 218 --------KEEWKLETLC-DLYETL-----------AITQSVIFVNTRRKVDWLTDKMRSRD------------HTV-SA 264 (369)
Q Consensus 218 --------~~~~~~~~l~-~~~~~~-----------~~~k~lv~~~~~~~~~~~~~~l~~~~------------~~~-~~ 264 (369)
........+. .++... .+.+++|||++++.|..+++.|.+.+ .++ .+
T Consensus 500 ~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 500 AAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp HTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 0011122222 232211 23479999999999999999997653 344 34
Q ss_pred ecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEecCC
Q 017573 265 THGD----------M----------DQ-----------------------------NTRDIIMREFRSGSSRVLITTDLL 295 (369)
Q Consensus 265 ~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vli~t~~~ 295 (369)
+++. + +. ..|..+++.|++|++++||+|+++
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~l 659 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMF 659 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTT
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchH
Confidence 4542 1 11 137788999999999999999999
Q ss_pred cCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCc----eeEEEEec
Q 017573 296 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK----GVAINFVT 340 (369)
Q Consensus 296 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~----~~~~~~~~ 340 (369)
.+|+|+|.+ +++.++.|.+...++|++||++|.++. |.++.|..
T Consensus 660 ltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 660 LTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999 556788889999999999999998653 55665554
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=234.97 Aligned_cols=192 Identities=30% Similarity=0.489 Sum_probs=171.6
Q ss_pred CCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc----CCCccEEEEcCCHHHHH
Q 017573 3 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVQCQALVLAPTRELAQ 78 (369)
Q Consensus 3 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~----~~~~~~liv~P~~~l~~ 78 (369)
+++.+.+.|..+||.+|+++|.++++.+..++++++++|||+|||++++++++..+... ..+.+++|++|+++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999877542 13448999999999999
Q ss_pred HHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEechhHhhccCcHH
Q 017573 79 QIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDEADEMLSRGFKD 157 (369)
Q Consensus 79 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~-~~~~~~~~viiDE~H~~~~~~~~~ 157 (369)
|+.+.++++....+..+..+.|+.........+..+++|+|+||+++...+.... ....+++++|+||+|++.+.++..
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~ 220 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 220 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHH
Confidence 9999999998888888989999888766666666678999999999998877654 567789999999999999999999
Q ss_pred HHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCC
Q 017573 158 QIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP 194 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~ 194 (369)
.+..+...+++..|++++|||++....++.+..+.++
T Consensus 221 ~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 221 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999998888877654
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=237.90 Aligned_cols=197 Identities=38% Similarity=0.595 Sum_probs=173.3
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
++|++.+.++|.++||..|+++|.++++.+..+ +++++++|||+|||++++++++..+.....++++||++|+++|+.
T Consensus 97 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~ 176 (300)
T 3fmo_B 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (300)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHH
Confidence 579999999999999999999999999999987 999999999999999999999999877666678999999999999
Q ss_pred HHHHHHHHhcccc-CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEechhHhhc-cCc
Q 017573 79 QIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGF 155 (369)
Q Consensus 79 q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~-~~~ 155 (369)
|+.+.+.++.... ++.+....++....... ...++|+|+||+++..++.+ ..+...+++++|+||+|++.+ .++
T Consensus 177 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~ 253 (300)
T 3fmo_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (300)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTH
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCc
Confidence 9999999987654 57777777766533221 35679999999999998865 456678899999999999987 678
Q ss_pred HHHHHHHHhhCCccCcEEEEEeeCChhHHHHHHHhcCCCEEEEec
Q 017573 156 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVK 200 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~ 200 (369)
...+..+...+++..|++++|||++.....+...++.+|..+...
T Consensus 254 ~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 254 QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 888999999999999999999999999999999999999887664
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.9e-31 Score=241.65 Aligned_cols=319 Identities=18% Similarity=0.204 Sum_probs=228.7
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
.|+ .|++.|.-..-.+.+|+ +..+.||+|||+++.++++-....+. .+.+|+|+..|+.|-++++..+...+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 354 68888887777666655 99999999999999988874433333 7999999999999999999999999999
Q ss_pred EEEEEECC--------------------------------------------------cchHHHHHHHccCCcEEEeccH
Q 017573 94 KVHACVGG--------------------------------------------------TSVREDQRILQAGVHVVVGTPG 123 (369)
Q Consensus 94 ~v~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~iiv~t~~ 123 (369)
++.++... ......+... .+||+++|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEccCc
Confidence 99988872 1111111111 3799999998
Q ss_pred HH-HHHHHcCC------CCCCCccEEEEechhHhh-ccC---------------cHHHHHHHHhhCC-------------
Q 017573 124 RV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG---------------FKDQIYDIFQLLP------------- 167 (369)
Q Consensus 124 ~l-~~~~~~~~------~~~~~~~~viiDE~H~~~-~~~---------------~~~~~~~~~~~~~------------- 167 (369)
.| +..++.+- .....+.+.|+||++.+. +.. .......+...+.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 88 45554431 123457899999999865 100 0011111111000
Q ss_pred --------------------------------------------------------------------------------
Q 017573 168 -------------------------------------------------------------------------------- 167 (369)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (369)
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence
Q ss_pred ------------------------ccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCccccccceeEEEEEccchhhhH
Q 017573 168 ------------------------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL 223 (369)
Q Consensus 168 ------------------------~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (369)
--.++.+||||......++ ...++..+..... ..+...+............+.
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef-~~iY~l~vv~IPt--nkp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEF-VQVYGMEVVVIPT--HKPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHH-HHHSCCCEEECCC--SSCCCCEECCCEEESSHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHH-HHHhCCeEEEECC--CCCcceeecCcEEEecHHHHH
Confidence 0056899999998766554 4444444333322 222222222112223445577
Q ss_pred HHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCC
Q 017573 224 ETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 301 (369)
Q Consensus 224 ~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 301 (369)
..+...+... .+.++||||++++.++.+++.|.+.|+++..+||+....++..+.+.++.| .|+|||+++++|+|+
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 7777766543 467999999999999999999999999999999996666666566666655 599999999999999
Q ss_pred C--------CCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 017573 302 Q--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 345 (369)
Q Consensus 302 ~--------~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 345 (369)
+ +..+||.++.|.+...|.|++||+||.|++|.+++|++..|.-
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 8 6679999999999999999999999999999999999988743
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=228.59 Aligned_cols=202 Identities=26% Similarity=0.446 Sum_probs=167.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHH
Q 017573 1 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 1 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q 79 (369)
++|++.+.+++.++||..|+++|.++++.+.+++++++.+|||+|||++++++++..+.. ...+.+++|++|+++|+.|
T Consensus 34 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 34 YKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp HCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999988764 2344589999999999999
Q ss_pred HHHHHHHhccccCcEEEEEECCcchHHH-HHHHccCCcEEEeccHHHHHHHHcC--CCCCCCccEEEEechhHhhc---c
Q 017573 80 IEKVMRALGDYLGVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLS---R 153 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~iiv~t~~~l~~~~~~~--~~~~~~~~~viiDE~H~~~~---~ 153 (369)
+.+.+.++....+..+....++...... ......+++|+|+||+.+...+... .....+++++|+||+|++.+ .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~ 193 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT 193 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--
T ss_pred HHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc
Confidence 9999999988778777766654432221 1122356799999999999988876 45677899999999999987 4
Q ss_pred CcHHHHHHHHhhC-CccCcEEEEEeeCChhHHHHHHHhcCCCEEEEecCc
Q 017573 154 GFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 202 (369)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~i~~saT~~~~~~~~~~~~~~~~~~~~~~~~ 202 (369)
++...+..++..+ ++..|++++|||++.+...+...++.++..+.....
T Consensus 194 ~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 194 GFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred cHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 6777788877665 457899999999999999999999999988876543
No 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=2.1e-28 Score=190.21 Aligned_cols=162 Identities=68% Similarity=1.049 Sum_probs=147.3
Q ss_pred ceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 017573 208 GIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 287 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 287 (369)
.+.+.+........+.+.+.+++.....+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 46677777776666999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCCcchhh
Q 017573 288 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 367 (369)
Q Consensus 288 vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
|||+|+++++|+|+|++++||++++|++..+|.|++||+||.|+.|.+++++++.+...+..++++++..+++++.++.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cC
Q 017573 368 LL 369 (369)
Q Consensus 368 ~~ 369 (369)
++
T Consensus 163 ~~ 164 (165)
T 1fuk_A 163 LL 164 (165)
T ss_dssp TT
T ss_pred hc
Confidence 54
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=6.5e-27 Score=216.05 Aligned_cols=131 Identities=22% Similarity=0.231 Sum_probs=110.3
Q ss_pred hCCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 13 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 13 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
..|+ .|++.|..+++.+.+|+ +.++.||+|||+++.++++.....+ ..++|++|++.|+.|.++++..++..++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G---~qv~VvTPTreLA~Qdae~m~~l~~~lG 148 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG---KGVHVVTVNDYLARRDAEWMGPVYRGLG 148 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC---SCCEEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC---CCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 3688 99999999999999998 9999999999999999885443333 3799999999999999999999999999
Q ss_pred cEEEEEECCcchHHHHHHHccCCcEEEeccHHH-HHHHHcCC------CCCC---CccEEEEechhHhh
Q 017573 93 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPD---YIKMFVLDEADEML 151 (369)
Q Consensus 93 ~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l-~~~~~~~~------~~~~---~~~~viiDE~H~~~ 151 (369)
+++..+.|+........ ...++|+|+||..| +.++...- .... .++++|+||+|.+.
T Consensus 149 Lsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999887544333 34589999999999 77777652 3455 78999999999976
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=3e-27 Score=183.14 Aligned_cols=158 Identities=41% Similarity=0.635 Sum_probs=146.1
Q ss_pred ccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhc
Q 017573 204 LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 283 (369)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 283 (369)
.....+.+.+..... ..+...+.+++.....+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 345567788777764 5688899999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 284 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 284 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
|+.+|||+|+++++|+|+|++++||++++|++..+|.|++||+||.|+.|.+++++.+.+...++.+++.++..+++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877654
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=186.45 Aligned_cols=160 Identities=45% Similarity=0.814 Sum_probs=146.5
Q ss_pred cccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcC
Q 017573 205 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 284 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 284 (369)
.+..+.+.+..++....+...+..++.....+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45678899998888777999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCcCCCCCCCCcEEEEecCC------CCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhcccc
Q 017573 285 SSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 358 (369)
Q Consensus 285 ~~~vli~t~~~~~G~d~~~~~~vi~~~~~------~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (369)
+.+|||+|+++++|+|+|.+++||++++| .+..+|.||+||+||.|+.|.+++++++.+...+..+.+.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 889999999999999999999999999999999999999999988
Q ss_pred ccCCcc
Q 017573 359 EELPSN 364 (369)
Q Consensus 359 ~~~~~~ 364 (369)
++++.+
T Consensus 164 ~~~~~~ 169 (175)
T 2rb4_A 164 KQLNAE 169 (175)
T ss_dssp EEECSS
T ss_pred cccCCc
Confidence 877644
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=5.8e-27 Score=219.46 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=108.3
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC-
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 312 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~- 312 (369)
.+.++||||++...++.+++.|...+..+..+||+++..+|.++++.|++|+.+|||+|+.+++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 017573 313 ----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 351 (369)
Q Consensus 313 ----~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 351 (369)
|.+..+|.|++||+||.+ .|.+++++++.+....+.+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 889999999999999984 79999999988776554443
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3e-27 Score=184.51 Aligned_cols=160 Identities=36% Similarity=0.682 Sum_probs=144.3
Q ss_pred ccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 017573 206 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 285 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 285 (369)
+..+.+++..... ..+...+.+++.....+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 3456777777665 568899999999888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHhccccccCCcc
Q 017573 286 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSN 364 (369)
Q Consensus 286 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 364 (369)
.+|||+|+++++|+|+|++++||++++|++...|.|++||+||.|+.|.+++++++. +...++.+.+.+...+++++.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999876 5678899999999999999877
Q ss_pred hh
Q 017573 365 VA 366 (369)
Q Consensus 365 ~~ 366 (369)
+.
T Consensus 162 ~~ 163 (172)
T 1t5i_A 162 ID 163 (172)
T ss_dssp --
T ss_pred hc
Confidence 64
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=188.56 Aligned_cols=178 Identities=28% Similarity=0.446 Sum_probs=144.3
Q ss_pred HhcCCCEEEEecCccccccceeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCC
Q 017573 189 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 268 (369)
.++.+|..+.+.........+.+.+..... ..+...+.+++... .+++||||++.+.++.+++.|...+..+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ------------------CCSEEEEEECCG-GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 445566666666666667788888877665 46888888888765 4689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHH
Q 017573 269 MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERML 347 (369)
Q Consensus 269 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~ 347 (369)
++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++..+|.|++||+||.|+.|.+++++++. +...+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 78888
Q ss_pred HHHHHHhccccccCCcchhhc
Q 017573 348 FDIQKFYNVVIEELPSNVADL 368 (369)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (369)
..+.+.++....++|++|.++
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHccCcCCHHHHhh
Confidence 999999999999999888764
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=187.17 Aligned_cols=165 Identities=35% Similarity=0.537 Sum_probs=137.5
Q ss_pred cccccceeEEEEEccchhhhHHHHHHHHHhc-cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHH
Q 017573 203 ELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 281 (369)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 281 (369)
......+.+.+..+.. ..+...+.+++... ..+++||||++.+.++.+++.|+..+..+..+||+++..+|.++++.|
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3446678888887765 45888888888876 567999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccC
Q 017573 282 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 361 (369)
Q Consensus 282 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (369)
++|+.+|||+|+++++|+|+|++++||++++|++..+|.|++||++|.|+.|.+++++++.+...++.+.+.++....++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhhc
Q 017573 362 PSNVADL 368 (369)
Q Consensus 362 ~~~~~~~ 368 (369)
++++.++
T Consensus 173 ~~~l~~~ 179 (185)
T 2jgn_A 173 PSWLENM 179 (185)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9888654
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=5.5e-25 Score=206.03 Aligned_cols=116 Identities=26% Similarity=0.377 Sum_probs=108.0
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCCCCcEEEEecC-
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 312 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~- 312 (369)
.+.++||||++...++.+++.|...+.++..+||+++..+|.++++.|++|+.+|||+|+.+++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 017573 313 ----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 350 (369)
Q Consensus 313 ----~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 350 (369)
|.+...|.|++||+||. ..|.+++++++.+......+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 88999999999999998 78999999998876655443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.1e-25 Score=181.75 Aligned_cols=144 Identities=31% Similarity=0.552 Sum_probs=135.6
Q ss_pred hhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCC
Q 017573 219 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 298 (369)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 298 (369)
...+.+.+.+++.....+++||||++.+.++.+++.|...+..+..+||+++..+|.++++.|++|..+|||+|+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35688999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 299 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 299 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
+|+|++++||++++|++...|.||+||+||.|+.|.+++++++.+...++.+.+.++..+.+++
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecC
Confidence 9999999999999999999999999999999999999999999999999999999998887665
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.2e-24 Score=183.51 Aligned_cols=153 Identities=31% Similarity=0.520 Sum_probs=137.5
Q ss_pred eeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 017573 209 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 288 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 288 (369)
+.++++.... ..+.+.+.+++.....+++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|..+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 3455555554 558899999998888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 289 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 289 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
||+|+++++|+|+|++++||+++.|++...|.|++||+||.|+.|.+++++++.+...++.+.+.++..+.+++
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 155 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887665
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=9.5e-26 Score=184.00 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=116.4
Q ss_pred CCCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC---CCccEEEEcCCHHHHHH-HHHHHHHhcc
Q 017573 14 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VQCQALVLAPTRELAQQ-IEKVMRALGD 89 (369)
Q Consensus 14 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~---~~~~~liv~P~~~l~~q-~~~~~~~~~~ 89 (369)
.+...|+++|.++++.+.+++++++.+|||+|||++++.++...+.... .+.+++|++|+++|+.| +.+.+.++..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4556899999999999999999999999999999999988887664321 23489999999999999 7788888765
Q ss_pred ccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCC------CCCCCccEEEEechhHhhccCcHHHHH-HH
Q 017573 90 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS------LRPDYIKMFVLDEADEMLSRGFKDQIY-DI 162 (369)
Q Consensus 90 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~------~~~~~~~~viiDE~H~~~~~~~~~~~~-~~ 162 (369)
. ++.+....++.............++|+|+||+.+...+.... .....++++|+||+|++....+...+. .+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 667777777655433332333458999999999998887653 445678999999999997665444432 22
Q ss_pred HhhC-------------CccCcEEEEEee
Q 017573 163 FQLL-------------PAKVQVGVFSAT 178 (369)
Q Consensus 163 ~~~~-------------~~~~~~i~~saT 178 (369)
.... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 146789999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=5e-27 Score=183.21 Aligned_cols=154 Identities=34% Similarity=0.564 Sum_probs=140.1
Q ss_pred eeEEEEEccchhhhHHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 017573 209 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 288 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 288 (369)
+.+.+...+....+...+.+++.....+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 44555555554567888888888777789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccccCC
Q 017573 289 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 362 (369)
Q Consensus 289 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
||+|+++++|+|+|++++||++++|++...|.|++||+||.|+.|.+++++++.+...+..+.++++..+++.+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776543
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=2.3e-24 Score=198.09 Aligned_cols=103 Identities=11% Similarity=0.176 Sum_probs=67.1
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE--EecCCcCCCCCCC----CcEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI--TTDLLARGIDVQQ----VSLV 307 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli--~t~~~~~G~d~~~----~~~v 307 (369)
..++++||++|...++.+++.+.. .. ....+.. .++.++++.|+++. .|++ +|..+.+|+|+|+ ++.|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 456899999999999999988865 22 3445543 46788999998864 5777 6799999999997 7899
Q ss_pred EEecCCCCcc------------------------------chhhhhcccccCCCceeEEEEeccc
Q 017573 308 INYDLPTQPE------------------------------NYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 308 i~~~~~~~~~------------------------------~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
|+.+.|.... .+.|.+||+.|..++--++++.++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 9999875322 3579999999986664455566544
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=2.1e-21 Score=179.25 Aligned_cols=310 Identities=17% Similarity=0.148 Sum_probs=193.9
Q ss_pred CCcHhhhhhhhcc----ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 18 KPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 18 ~~~~~Q~~~~~~~----~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
++||+|.++...+ ..++++++++|||+|||++++++++. . +.+++|++|+++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 7999999988754 46899999999999999999999887 1 238999999999999999999888666677
Q ss_pred EEEEEECCcch---------------------------------HHHH------------------HHHccCCcEEEecc
Q 017573 94 KVHACVGGTSV---------------------------------REDQ------------------RILQAGVHVVVGTP 122 (369)
Q Consensus 94 ~v~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~iiv~t~ 122 (369)
++..+.|.... .... +.....++|+|+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77776653211 0000 11234689999999
Q ss_pred HHHHHHHHcCCCCC-CCccEEEEechhHhhccCc----------------------------------------------
Q 017573 123 GRVFDMLRRQSLRP-DYIKMFVLDEADEMLSRGF---------------------------------------------- 155 (369)
Q Consensus 123 ~~l~~~~~~~~~~~-~~~~~viiDE~H~~~~~~~---------------------------------------------- 155 (369)
..++....+..+.. ....++|+||||++.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99987654443322 3457899999998765 10
Q ss_pred ---------HHHHH----------------------------HHH----------------------------hhCCcc-
Q 017573 156 ---------KDQIY----------------------------DIF----------------------------QLLPAK- 169 (369)
Q Consensus 156 ---------~~~~~----------------------------~~~----------------------------~~~~~~- 169 (369)
...+. .++ +.+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 000 001112
Q ss_pred CcEEEEEeeCChhHHHHHHHhcCC-CEEE---E-ecCccccccceeEEEEEc--cc--h---hhhHHHHHHHHHh---cc
Q 017573 170 VQVGVFSATMPPEALEITRKFMNK-PVRI---L-VKRDELTLEGIKQFYVNV--EK--E---EWKLETLCDLYET---LA 234 (369)
Q Consensus 170 ~~~i~~saT~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~~~~~~--~~--~---~~~~~~l~~~~~~---~~ 234 (369)
..+|++|||+.+ ...+...+... +... . ...... ..-...+... +. . ....+.+.+.+.. ..
T Consensus 316 ~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 578889999976 32333333222 2221 0 011111 1222223221 11 0 1112333333322 24
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe--cCCcCCCCCC---C--CcEE
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT--DLLARGIDVQ---Q--VSLV 307 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t--~~~~~G~d~~---~--~~~v 307 (369)
++.++||++|...++.+++. .+..+..-..+++ +.+.++.|+.+.-.||+++ ..+.+|+|+| + ++.|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 56899999999999999873 3333333222334 4557777854344799998 5999999999 3 7889
Q ss_pred EEecCCCCc--------------------c----------chhhhhcccccCCCceeEEEEecccc
Q 017573 308 INYDLPTQP--------------------E----------NYLHRIGRSGRFGRKGVAINFVTRDD 343 (369)
Q Consensus 308 i~~~~~~~~--------------------~----------~~~Q~~GR~~R~~~~~~~~~~~~~~~ 343 (369)
|+.+.|... - .+.|.+||+.|..++.-++++.++.-
T Consensus 467 iI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 532 (551)
T 3crv_A 467 VIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRF 532 (551)
T ss_dssp EEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhc
Confidence 988866411 0 13699999999877755666666543
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=6.2e-24 Score=180.02 Aligned_cols=154 Identities=17% Similarity=0.095 Sum_probs=120.9
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEE
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 97 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~ 97 (369)
+|+++|.++++.+.++++.++++|||+|||.+++.++...+..+. .++||++|+++|+.||.+++.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 899999999999998889999999999999999887776655332 289999999999999999999987655566666
Q ss_pred EECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEe
Q 017573 98 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
+.++..... ......+|+|+|++.+.... ......++++|+||||++.+ ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 666654322 11245799999998875432 22345689999999999863 366677788877899999999
Q ss_pred eCChhH
Q 017573 178 TMPPEA 183 (369)
Q Consensus 178 T~~~~~ 183 (369)
||+...
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997543
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.87 E-value=1.6e-20 Score=174.45 Aligned_cols=316 Identities=15% Similarity=0.143 Sum_probs=186.7
Q ss_pred CCCcHhhhhhhhcc----ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccC
Q 017573 17 EKPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 92 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~----~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 92 (369)
.+||+.|.++...+ .++++++++||||+|||++++++++..+... +.+++|++|++++..|..+++..+....+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 37899999998754 4689999999999999999999999887543 23899999999999999999988755444
Q ss_pred cEEEEEECCcchHH------------------HH----------------------------------------------
Q 017573 93 VKVHACVGGTSVRE------------------DQ---------------------------------------------- 108 (369)
Q Consensus 93 ~~v~~~~~~~~~~~------------------~~---------------------------------------------- 108 (369)
+++..+.|..+..- .+
T Consensus 80 ~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~ 159 (620)
T 4a15_A 80 IRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGE 159 (620)
T ss_dssp CCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHH
T ss_pred eEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhh
Confidence 55544433211000 00
Q ss_pred ----------HHHccCCcEEEeccHHHHHHHHcC------CCCCCCccEEEEechhHhhcc-------------------
Q 017573 109 ----------RILQAGVHVVVGTPGRVFDMLRRQ------SLRPDYIKMFVLDEADEMLSR------------------- 153 (369)
Q Consensus 109 ----------~~~~~~~~iiv~t~~~l~~~~~~~------~~~~~~~~~viiDE~H~~~~~------------------- 153 (369)
+.....+||+|++|+.++....+. ..... -.++|+||||++.+.
T Consensus 160 ~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~-~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~ 238 (620)
T 4a15_A 160 RNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRN-QIVIILDEAHNLPDIGRSIGSFRISVESLNRADR 238 (620)
T ss_dssp HTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGG-GEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHH
T ss_pred hcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcC-CeEEEEECCCchHHHHHHhhcceeCHHHHHHHHH
Confidence 001235899999998875433221 12222 369999999986530
Q ss_pred -------Cc------H-HH-------HH------------------------------------------HHHh------
Q 017573 154 -------GF------K-DQ-------IY------------------------------------------DIFQ------ 164 (369)
Q Consensus 154 -------~~------~-~~-------~~------------------------------------------~~~~------ 164 (369)
.. . +. +. .+..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 318 (620)
T 4a15_A 239 EAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEK 318 (620)
T ss_dssp HHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0 00 00 0000
Q ss_pred --h--------------------CC------------------------------ccCcEEEEEeeCChhHHHHHHHhcC
Q 017573 165 --L--------------------LP------------------------------AKVQVGVFSATMPPEALEITRKFMN 192 (369)
Q Consensus 165 --~--------------------~~------------------------------~~~~~i~~saT~~~~~~~~~~~~~~ 192 (369)
. .. ....+|++|||+.+ ...+...+..
T Consensus 319 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lGl 397 (620)
T 4a15_A 319 EKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITGF 397 (620)
T ss_dssp HHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHCC
T ss_pred cccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhCC
Confidence 0 00 01245889999975 3333333322
Q ss_pred CCEEEEecCccccccceeEEEEE-cc-----chhhh----HHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCee
Q 017573 193 KPVRILVKRDELTLEGIKQFYVN-VE-----KEEWK----LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV 262 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~----~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~ 262 (369)
...... ........+...++.. .+ ..... .+.+..++.. .+++++||++|....+.+++.++..+ .
T Consensus 398 ~~~~~~-~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~~~~--~ 473 (620)
T 4a15_A 398 EIPFKK-IGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVSFEH--M 473 (620)
T ss_dssp CCCEEE-CCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCCSCC--E
T ss_pred Cceeee-cCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHhcc--h
Confidence 222222 2222223332222211 11 11111 2223333333 35789999999999999999887322 2
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEec--CCcCCCCCCC--CcEEEEecCCCCc----------------------
Q 017573 263 SATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ--VSLVINYDLPTQP---------------------- 316 (369)
Q Consensus 263 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~--~~~~G~d~~~--~~~vi~~~~~~~~---------------------- 316 (369)
. ...+++..++..+++.|. ++-.||+++. .+.+|+|+|+ ++.||+.+.|...
T Consensus 474 ~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~ 551 (620)
T 4a15_A 474 K-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEY 551 (620)
T ss_dssp E-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHH
T ss_pred h-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchH
Confidence 2 344455678999999999 7778999984 8999999996 7889999877531
Q ss_pred -------cchhhhhcccccCCCceeEEEEeccc
Q 017573 317 -------ENYLHRIGRSGRFGRKGVAINFVTRD 342 (369)
Q Consensus 317 -------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 342 (369)
..+.|.+||+.|..++--+++++++.
T Consensus 552 ~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 552 SVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp HTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred HhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 12379999999987665555565554
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.87 E-value=2.7e-21 Score=158.72 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=109.3
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcE-E
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK-V 95 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~-v 95 (369)
..|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +.+ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v 161 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYV 161 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeE
Confidence 37999999999999999999999999999999987776643 238999999999999999999884 566 7
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
..+.++.. ...+|+|+|++.+....... ...++++|+||+|++.+..+. .+...++ ..+++++
T Consensus 162 ~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~L 224 (237)
T 2fz4_A 162 GEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGL 224 (237)
T ss_dssp EEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEE
T ss_pred EEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEE
Confidence 77766554 24689999999987655431 234799999999998766543 3445554 5678999
Q ss_pred EeeCChh
Q 017573 176 SATMPPE 182 (369)
Q Consensus 176 saT~~~~ 182 (369)
||||...
T Consensus 225 SATp~r~ 231 (237)
T 2fz4_A 225 TATFERE 231 (237)
T ss_dssp EESCC--
T ss_pred ecCCCCC
Confidence 9999754
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.9e-21 Score=156.65 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=117.1
Q ss_pred CCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCC--CccEEEEcCCHHHHHHHHHHHHHhcc-cc
Q 017573 15 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGD-YL 91 (369)
Q Consensus 15 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~-~~ 91 (369)
....++++|.++++.+.+++++++.||||+|||..+..+++........ ..++++++|+++++.|..+.+.+... ..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 3446899999999999999999999999999998877777765543322 33799999999999999998876543 22
Q ss_pred CcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHh-hccCcH-HHHHHHHhhCCcc
Q 017573 92 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRGFK-DQIYDIFQLLPAK 169 (369)
Q Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~-~~~~~~-~~~~~~~~~~~~~ 169 (369)
+..+........ ......++|+|+|++.+.+.+.. ...+++++|+||+|+. .+.++. ..+..+.... +.
T Consensus 138 ~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 138 GKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp TSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred CceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 333433222111 00113578999999999988876 3677899999999984 444444 4555555555 47
Q ss_pred CcEEEEEeeCChhH
Q 017573 170 VQVGVFSATMPPEA 183 (369)
Q Consensus 170 ~~~i~~saT~~~~~ 183 (369)
.|++++|||++.+.
T Consensus 209 ~~~il~SAT~~~~~ 222 (235)
T 3llm_A 209 VRIVLMSATIDTSM 222 (235)
T ss_dssp SEEEEEECSSCCHH
T ss_pred CeEEEEecCCCHHH
Confidence 88999999998654
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=5.9e-19 Score=147.16 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=97.5
Q ss_pred hhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEec
Q 017573 219 EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTD 293 (369)
Q Consensus 219 ~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~ 293 (369)
...|...+.+++... .+.|+|||++....+..+.+.|... +..+..++|+++..+|.++++.|+++ +.+ +|++|.
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 455788888888765 6789999999999999999999885 89999999999999999999999998 677 678999
Q ss_pred CCcCCCCCCCCcEEEEecCCCCccchhhhhcccccCCCceeE--EEEecccc
Q 017573 294 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRDD 343 (369)
Q Consensus 294 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~--~~~~~~~~ 343 (369)
++++|+|++.+++||++++|||+..+.|++||++|.|+.+.+ +.++..+.
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 999999999999999999999999999999999999987654 55555553
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.91 E-value=4e-09 Score=98.16 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=91.9
Q ss_pred HHHHHHHhC-CCCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHH--HHHHHHhhhccCCCccEEEEcCCHHHHHHHHH
Q 017573 6 NLLRGIYAY-GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF--CSGILQQLDYGLVQCQALVLAPTRELAQQIEK 82 (369)
Q Consensus 6 ~i~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~--~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 82 (369)
.+...|... +-....+.|++++..+..++.+++.|++|+|||.++ ++..+..+... .+.++++++||...+.++.+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHH
Confidence 344555543 222237899999999999999999999999999553 33333333212 23489999999999999988
Q ss_pred HHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHH
Q 017573 83 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 162 (369)
Q Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~ 162 (369)
.+......+++......+ .. ... ..-..++-.++... .+.........++++|+||++++. ...+..+
T Consensus 215 ~~~~~~~~l~l~~~~~~~-~~--~~~---~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml~----~~~~~~L 282 (608)
T 1w36_D 215 SLGKALRQLPLTDEQKKR-IP--EDA---STLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMID----LPMMSRL 282 (608)
T ss_dssp HHTHHHHHSSCCSCCCCS-CS--CCC---BTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHH
T ss_pred HHHHHHhcCCCCHHHHhc-cc--hhh---hhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhCC----HHHHHHH
Confidence 877654433321100000 00 000 00001111112111 011111222357999999999653 4566778
Q ss_pred HhhCCccCcEEEEEee
Q 017573 163 FQLLPAKVQVGVFSAT 178 (369)
Q Consensus 163 ~~~~~~~~~~i~~saT 178 (369)
+..++...+++++.-.
T Consensus 283 l~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 283 IDALPDHARVIFLGDR 298 (608)
T ss_dssp HHTCCTTCEEEEEECT
T ss_pred HHhCCCCCEEEEEcch
Confidence 8888888888876655
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.74 E-value=1.2e-08 Score=96.01 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCcHhhhhhhhccccCC-cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 17 EKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~-~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..+++.|.+|+..++..+ -.+|+||+|||||.+....+.+.+..+. ++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~---~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL---KVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEcCchHHHHHHHHHHHhc
Confidence 458899999999987655 5799999999999887766666665543 8999999999999988888654
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.72 E-value=9.7e-08 Score=87.98 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=80.1
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEE
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 96 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~ 96 (369)
..+++.|++++..+..++.+++.||+|+|||.++. .++..+... +.++++++|+...+..+.+... ....
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~ 257 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL--GLEVGLCAPTGKAARRLGEVTG-------RTAS 257 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-------SCEE
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CCeEEEecCcHHHHHHhHhhhc-------ccHH
Confidence 36889999999999999999999999999997643 334343332 2389999999888776655431 1111
Q ss_pred EEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 97 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
.++ +.+..... .+.........++++|+||++++. ...+..++..++...+++++.
T Consensus 258 Tih---------~ll~~~~~-----------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 258 TVH---------RLLGYGPQ-----------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp EHH---------HHTTEETT-----------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred HHH---------HHHcCCcc-----------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 100 00000000 011111223347999999999863 345667777777777766654
Q ss_pred ee
Q 017573 177 AT 178 (369)
Q Consensus 177 aT 178 (369)
-+
T Consensus 314 D~ 315 (574)
T 3e1s_A 314 DT 315 (574)
T ss_dssp CT
T ss_pred cc
Confidence 33
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.68 E-value=1.9e-07 Score=87.45 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 16 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 16 ~~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
...+++.|.+++..+..+...+|+||+|+|||.+....+...... .+.++++++|+..-+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346889999999998888889999999999998765444433321 2338999999999999988887654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.8e-07 Score=88.21 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=55.4
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..+++.|.+|+..+..+.-.+|+||+|+|||.++...+...+.. .+.++++++|+..-+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46789999999999888889999999999998765544433332 1238999999999999999888765
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.64 E-value=1.6e-07 Score=84.75 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=50.9
Q ss_pred HhCCCCCCcHhhhhhhhccccC-----CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH
Q 017573 12 YAYGFEKPSAIQQRGIVPFCKG-----LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 12 ~~~~~~~~~~~Q~~~~~~~~~~-----~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
.-+.|..|++-|++++..+... +.++|.|++|+|||.++. .++..+..... ..+++++|+...+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE-TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh
Confidence 3457889999999999977542 489999999999997654 44444433222 26999999988776665544
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.57 E-value=4.6e-07 Score=86.59 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=54.2
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
..+++.|.+|+..+..+.-.+|+||+|+|||.+....+. .+... .+.++++++|+..-+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~-~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHH-HHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHH-HHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999988888899999999999987654443 33321 2238999999999999888887654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.51 E-value=3.7e-05 Score=72.67 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-CCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
..+++-|++++.. .++.++|.|++|||||.+.+.-+...+..+ ....+++++++++..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 5789999999984 367899999999999998877777666543 233489999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.25 E-value=1.9e-05 Score=66.07 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=90.1
Q ss_pred hhhhHHHHHHHHHhc--cCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCc
Q 017573 219 EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296 (369)
Q Consensus 219 ~~~~~~~l~~~~~~~--~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 296 (369)
.+.|+..+..++... .+.+++||++..+...-+.+++...++++..+.|.....+ .+. .++...+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCC
Confidence 355788888877655 3459999999999999999999999999999999854432 211 234555666677666
Q ss_pred CCCC-----CCCCcEEEEecCCCCccch-hhhhcccccCC----CceeEEEEeccccHHHH
Q 017573 297 RGID-----VQQVSLVINYDLPTQPENY-LHRIGRSGRFG----RKGVAINFVTRDDERML 347 (369)
Q Consensus 297 ~G~d-----~~~~~~vi~~~~~~~~~~~-~Q~~GR~~R~~----~~~~~~~~~~~~~~~~~ 347 (369)
.|+| ...++.||.+|+.|++..= +|++-|+.|.+ +.-.++.+++.+..+..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 6776 6789999999999999885 99999988873 45678888887766543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.85 E-value=4.7e-05 Score=66.10 Aligned_cols=71 Identities=8% Similarity=0.020 Sum_probs=54.8
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
.|.|+|+..+..+...+.+++..+-+.|||.++...++..+... .+..++++.|+..-+..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 78999999998775567789999999999987766555433332 334799999999988877777766543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.76 E-value=0.00022 Score=66.23 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=56.7
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhcccc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 91 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 91 (369)
.|+|+|+..+..+-..+..++..+-|.|||.+....++..+...+ +..++++.|+...+....+.+..+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 689999999987755677999999999999876655554444332 3489999999999988888777765443
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.67 E-value=0.00017 Score=55.95 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=24.8
Q ss_pred cHhhhhhhhccc---------cCCcEEEEcCCCChhhHHHH
Q 017573 20 SAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 20 ~~~Q~~~~~~~~---------~~~~~li~~~tG~GKT~~~~ 51 (369)
.+.|++++..+. .++.+++.||+|+|||..+-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456777776654 36889999999999997653
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.66 E-value=0.00021 Score=62.84 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHcc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 113 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 113 (369)
+-.++.|+.|+|||....-. +.. .+.++++|+++++.++.+.+.+. +. . .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~~~----~~~lVlTpT~~aa~~l~~kl~~~----~~--------~----------~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----VNF----EEDLILVPGRQAAEMIRRRANAS----GI--------I----------V 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----CCT----TTCEEEESCHHHHHHHHHHHTTT----SC--------C----------C
T ss_pred cEEEEEcCCCCCHHHHHHHH----hcc----CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----------c
Confidence 44689999999999764222 211 27899999999998888877432 00 0 1
Q ss_pred CCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEee
Q 017573 114 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 178 (369)
Q Consensus 114 ~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 178 (369)
....-+.|.++++.. ........++++|+||+-.+. ...+..++...+. .+++++.-+
T Consensus 212 ~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~~----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLMLH----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGSC----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccCC----HHHHHHHHHhCCC-CEEEEecCc
Confidence 123347777776531 111112236999999998652 2333344445443 555554443
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.64 E-value=8.7e-05 Score=70.32 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhcc
Q 017573 18 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 89 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 89 (369)
.+++-|++++... ++.++|.|+.|||||.+...-+...+.. +....++++|+.|+..+.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999863 6789999999999999887777766654 32334899999999999999999987654
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.64 E-value=0.00012 Score=56.97 Aligned_cols=39 Identities=18% Similarity=0.024 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
++-.++.+|+|+|||..++-.+......+. +++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~---~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK---KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC---EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeecc
Confidence 455789999999999887655555444443 788888874
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.62 E-value=0.00012 Score=57.04 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
++-.++.+|+|+|||..++-.+.+....+. +++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 456789999999999887666555544444 899999874
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.60 E-value=0.00018 Score=61.85 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=28.1
Q ss_pred CcHhhhhhhhcccc----C---CcEEEEcCCCChhhHHHHHHHHH
Q 017573 19 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQ 56 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~----~---~~~li~~~tG~GKT~~~~~~~~~ 56 (369)
++|+|.+++..+.. + ...++.||+|+|||..+...+-.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 57899998876653 3 24899999999999876544443
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.59 E-value=0.00056 Score=58.52 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=23.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
..+++.||+|+|||..+- .+...+... +..++++..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEEH
Confidence 579999999999997754 333333322 225666543
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.52 E-value=0.00028 Score=56.39 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 112 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 112 (369)
+.-.++.+++|+|||..++..+.+....+. +++++.|...- . . ........++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~--r-~--~~~i~srlG~~------------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDT--R-S--IRNIQSRTGTS------------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCG--G-G--CSSCCCCCCCS------------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCc--h-H--HHHHHHhcCCC------------------
Confidence 455788999999999887666665555444 78998876421 0 0 00111111110
Q ss_pred cCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhh
Q 017573 113 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 151 (369)
Q Consensus 113 ~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 151 (369)
...+-+.+.+.+...+.... ....+++|++||++.+.
T Consensus 66 -~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 -LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 01233556666666665532 23347999999999753
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.51 E-value=8.7e-05 Score=55.48 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=21.7
Q ss_pred hhhhhhhccccCCcEEEEcCCCChhhHHHH
Q 017573 22 IQQRGIVPFCKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 22 ~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~ 51 (369)
.+..++..+ .++.+++.+|+|+|||..+-
T Consensus 26 ~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 26 ELVYVLRHK-HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp HHHHHCCCC-CCSEEEEESSSTTTTCHHHH
T ss_pred HHHHHHHhc-CCCEEEEECCCCCCHHHHHH
Confidence 344455555 67889999999999997643
No 114
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.49 E-value=0.00027 Score=67.39 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
..+++-|++++... ++.++|.|+.|||||.+...-+...+.. +....++|+++.|+..+.++.+.+.+..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 57999999999863 5789999999999999887777766654 3233489999999999999998887753
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.45 E-value=0.00017 Score=56.77 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
|+-.++.+++|+|||..++-.+.+....+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 344578999999999887777766655554 8999999753
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.40 E-value=0.00021 Score=56.78 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
++-.++.+++|+|||..++-.+.++...+. +++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecC
Confidence 455688999999999887777666655544 899999875
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.34 E-value=0.00044 Score=69.86 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCCcHhhhhhhhccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC---CCccEEEEcCCHHHHHHHHHHHHHhccccCc
Q 017573 17 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VQCQALVLAPTRELAQQIEKVMRALGDYLGV 93 (369)
Q Consensus 17 ~~~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~---~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 93 (369)
..+++-|.+++..- +++++|.|+.|||||.+.+--++..+..+. ...+++++++|++.+..+.+.+.+.......
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999764 889999999999999998777777776643 3348999999999999999888774321100
Q ss_pred EEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHH
Q 017573 94 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 129 (369)
Q Consensus 94 ~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~ 129 (369)
. .++. ....+....-..+-|+|.++|...+
T Consensus 87 ~----~~~~--~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 87 Q----RPGS--LHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp H----STTC--HHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred c----Ccch--HHHHHHHhccCCCeEEeHHHHHHHH
Confidence 0 0000 1111111222457889999986444
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.26 E-value=0.0025 Score=50.84 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=23.8
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
...++++||+|.+.... ...+..++...+....+++.|
T Consensus 102 ~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 102 PFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp SCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 35799999999875432 344555555555555555544
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.24 E-value=0.00079 Score=52.05 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
++-.++.+|+|+|||.-.+-.+-+....+. +++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~---kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEccc
Confidence 456799999999999776666665555443 89999887
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.16 E-value=0.0017 Score=48.15 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.4
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..+.++++.+|+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35688999999999999876
No 121
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.16 E-value=0.0021 Score=47.49 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.0
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..+.++++.+|+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34688999999999999765
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.0021 Score=56.23 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4789999999999997754
No 123
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0032 Score=53.11 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
+.++++.||+|+|||.++- .++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 5789999999999997753 444444
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.14 E-value=0.004 Score=51.62 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999998764
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.13 E-value=0.0011 Score=52.07 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
|.=.++.+|+|+|||..++..+.+....+. +++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~---kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQ---KVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCC---ceEEEEeccC
Confidence 344689999999999876666554444433 8999999753
No 126
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.12 E-value=0.0038 Score=48.36 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH-HHHHHHHHHHhccccCcEEEEEECCcch--HH-HH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL-AQQIEKVMRALGDYLGVKVHACVGGTSV--RE-DQ 108 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l-~~q~~~~~~~~~~~~~~~v~~~~~~~~~--~~-~~ 108 (369)
...+++..++|.|||.+++..++.++..+. +++++--.+.- ...-.+.+..+ ++.......+... .. ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 468999999999999999999998888776 88888433210 00000111221 2222221111100 00 00
Q ss_pred HHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccC--cHHHHHHHHhhCCccCcEEEEEeeCChhHHH
Q 017573 109 RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATMPPEALE 185 (369)
Q Consensus 109 ~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~--~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~ 185 (369)
.... --..|...... +....+|+||+||+-.....+ ....+..++...+....+|+.+--+++.+.+
T Consensus 101 ~~~~--------a~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 101 DTAA--------CMAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHH--------HHHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHH--------HHHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 0000 01122222222 223458999999997654333 3466777777777676666644445544433
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.09 E-value=0.0031 Score=56.28 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=24.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
..+++.||+|+|||..+- ++...+.....+.+++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH
Confidence 579999999999997653 33334433222335666544
No 128
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.97 E-value=0.0015 Score=60.50 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=72.2
Q ss_pred CCcHhhhhhhhcccc--CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEE
Q 017573 18 KPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 95 (369)
Q Consensus 18 ~~~~~Q~~~~~~~~~--~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v 95 (369)
.++.-|++++..+.+ ....++.|+-|.|||..+ ..++..+.. .+++.+|+..-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l-G~~~a~~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA-GQLISRIAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH-HHHHHHSSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH-HHHHHHHHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 578899999988876 456799999999999554 333334321 578889998755543332211
Q ss_pred EEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 96 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
.+-+..|+.+.. . ....+++|||||=.+ ....+..++...+ .++|
T Consensus 240 --------------------~i~~~~Pd~~~~---~----~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA---S----DEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH---S----CCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhh---C----cccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEE
Confidence 133445555431 1 123699999999976 3455556665443 5777
Q ss_pred EeeCC
Q 017573 176 SATMP 180 (369)
Q Consensus 176 saT~~ 180 (369)
|.|..
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 77864
No 129
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.90 E-value=0.0014 Score=55.57 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.89 E-value=0.0019 Score=52.30 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.||+|+|||..+-
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999997754
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.0044 Score=54.22 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
...+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3579999999999997753
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.82 E-value=0.0048 Score=48.54 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.3
Q ss_pred CcEEEEcCCCChhhHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~ 52 (369)
+.+++.||+|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 7899999999999987543
No 133
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0044 Score=53.54 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=24.7
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEe
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 177 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 177 (369)
..+++++||+|.+.... ...+...+...+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 35799999999875432 3455556666555555555443
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.68 E-value=0.0043 Score=52.90 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=23.9
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 174 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (369)
..+++++||+|.+........+..++...+...++++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 4689999999998622234555555555555565555
No 135
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.65 E-value=0.018 Score=50.77 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=67.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc--CCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA--PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 111 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~--P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 111 (369)
.-+++.+++|+|||+.+...+......+ .+++++. +.+.-+. +++..+....++.+.......
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~--------- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQ--------- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCS---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccC---------
Confidence 4578899999999987654444333322 2676666 2332222 223333333344332211111
Q ss_pred ccCCcEEEeccHHH-HHHHHcCCCCCCCccEEEEechhHhh---ccCcHHHHHHHHhhCCccCcEEEEEeeCChhHHHHH
Q 017573 112 QAGVHVVVGTPGRV-FDMLRRQSLRPDYIKMFVLDEADEML---SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEIT 187 (369)
Q Consensus 112 ~~~~~iiv~t~~~l-~~~~~~~~~~~~~~~~viiDE~H~~~---~~~~~~~~~~~~~~~~~~~~~i~~saT~~~~~~~~~ 187 (369)
.|..+ ...+.. .....++++|+|++-+.. +......+..+.....+...++.++|+...+.....
T Consensus 163 ---------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 163 ---------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp ---------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred ---------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 11111 112222 122347999999997643 223445555666666556666778888765554444
Q ss_pred HHh
Q 017573 188 RKF 190 (369)
Q Consensus 188 ~~~ 190 (369)
..+
T Consensus 232 ~~f 234 (433)
T 3kl4_A 232 SRF 234 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.55 E-value=0.0027 Score=55.66 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=21.8
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
.+++.||+|+|||..+- .+...+.... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhc-CeeEEEEe
Confidence 79999999999997753 3333333221 22455554
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.49 E-value=0.0074 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.204 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~ 53 (369)
..++++.||+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999775433
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0075 Score=51.36 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=23.9
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
...++++||+|.+.... ...+..++...+....+++.+
T Consensus 110 ~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp SCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 35799999999875332 344555566555555555533
No 139
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0068 Score=50.56 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
...++++.||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 45789999999999997753
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.42 E-value=0.014 Score=49.59 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+++++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999997763
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.39 E-value=0.039 Score=48.71 Aligned_cols=57 Identities=23% Similarity=0.152 Sum_probs=32.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc--CCHHHHHHHHHHHHHhccccCcEEE
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA--PTRELAQQIEKVMRALGDYLGVKVH 96 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~--P~~~l~~q~~~~~~~~~~~~~~~v~ 96 (369)
.-+++.+++|+|||+++...+......+ .+++++. |.+.-+ .+++..+....++.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 4579999999999988655444333322 2676666 333322 2334444444455553
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.33 E-value=0.024 Score=49.39 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.017 Score=49.91 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=27.9
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEEeeCC
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 180 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~saT~~ 180 (369)
..+++|+||+|.+ +......+..++...++...+++.|..+.
T Consensus 134 ~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4689999999984 34445666677776666665665554443
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.079 Score=42.81 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=33.5
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
..|.-+++.||+|+|||..++..+......+. +++++..... ..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSSC-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccCC-HHHHHHHHH
Confidence 45678899999999999886655555544332 7888775432 344444444
No 145
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.01 Score=51.56 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 589999999999999875
No 146
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.10 E-value=0.025 Score=49.57 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
..++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999997763
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.018 Score=49.01 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4789999999999997753
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.09 E-value=0.032 Score=46.95 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
.++.+++.||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46789999999999997753
No 149
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.011 Score=52.18 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 589999999999999775
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.01 E-value=0.038 Score=44.50 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.7
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.||+|+|||..+-
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.017 Score=49.04 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=22.8
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..++|+||+|.+.... ...+..++...+....+++.|
T Consensus 108 ~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 5799999999875332 334445555555555555544
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.94 E-value=0.023 Score=47.67 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999997753
No 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.94 E-value=0.04 Score=47.55 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+++++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3679999999999998764
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.025 Score=49.84 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999875
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.88 E-value=0.018 Score=50.12 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=21.7
Q ss_pred ccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEE
Q 017573 139 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 175 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (369)
..++|+||+|.+.... ...+...+...+....+++.
T Consensus 120 ~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEE
T ss_pred eEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEE
Confidence 5799999999875332 34445555554444444443
No 156
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.88 E-value=0.1 Score=42.60 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997753
No 157
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.035 Score=46.72 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=24.2
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++|+||+|.+.... ...+.+.+..-++...+++.|
T Consensus 82 ~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 46899999999985433 344555556555555555444
No 158
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.024 Score=49.59 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 588999999999999875
No 159
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.019 Score=50.73 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 589999999999999875
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.58 E-value=0.063 Score=48.40 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=27.7
Q ss_pred cEEEEechhHhhccC----------cHHHHHHHHhhCCccCcEEEEEeeCCh
Q 017573 140 KMFVLDEADEMLSRG----------FKDQIYDIFQLLPAKVQVGVFSATMPP 181 (369)
Q Consensus 140 ~~viiDE~H~~~~~~----------~~~~~~~~~~~~~~~~~~i~~saT~~~ 181 (369)
+++++||+|.+.... ....+...+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 689999999886421 123444555555556667777888654
No 161
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.55 E-value=0.077 Score=47.29 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999997763
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.47 E-value=0.016 Score=49.03 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=14.9
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
++++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997753
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.45 E-value=0.01 Score=52.95 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.+++++||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997753
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.048 Score=46.74 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=25.2
Q ss_pred CccEEEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 138 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 138 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
..+++|+||+|.+... ....+..++...+....+++.+
T Consensus 110 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 3689999999987543 2455666666666566555443
No 165
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.035 Score=49.10 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
..+.+|+.||+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 3589999999999999775
No 166
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.30 E-value=0.087 Score=46.99 Aligned_cols=41 Identities=17% Similarity=-0.054 Sum_probs=28.4
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
..|.-+++.|++|+|||..++..+.+..... +.+++|+..-
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 3456789999999999987766666554321 2268887653
No 167
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.29 E-value=0.12 Score=46.32 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCcCCCCCC
Q 017573 223 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 302 (369)
Q Consensus 223 ~~~l~~~~~~~~~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 302 (369)
...+..+++. .+.++++.+.+...++.+.+.|...+......... . .+. .-.+.++...+..|+-+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccC
Confidence 3455555543 24689999999999999999999887765443221 1 112 234778888899999999
Q ss_pred CCcEEEEec
Q 017573 303 QVSLVINYD 311 (369)
Q Consensus 303 ~~~~vi~~~ 311 (369)
....+++.+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 888887754
No 168
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.29 E-value=0.094 Score=46.91 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=29.0
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
+..|.-+++.|++|+|||..++..+.+..... +.+++|+..-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 34567789999999999987766655554322 2268887743
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.27 E-value=0.035 Score=48.88 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.8
Q ss_pred CcEEE--EcCCCChhhHHHH
Q 017573 34 LDVIQ--QAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li--~~~tG~GKT~~~~ 51 (369)
..+++ .||+|+|||..+-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46788 8999999997654
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.21 E-value=0.069 Score=45.65 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999998753
No 171
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.95 E-value=0.026 Score=47.19 Aligned_cols=42 Identities=10% Similarity=-0.080 Sum_probs=30.5
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELA 77 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~ 77 (369)
.+++.+|+|+|||..++..+.+....+ .+.+++|+..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhh
Confidence 579999999999988777766655432 123899988765553
No 172
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.88 E-value=0.22 Score=40.08 Aligned_cols=44 Identities=14% Similarity=-0.108 Sum_probs=27.5
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPT 73 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~ 73 (369)
+..|.-+.+.+|+|+|||..+...+...+... ..+..++++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 34567889999999999987655554322211 012267776543
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.77 E-value=0.051 Score=48.66 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.+|+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999775
No 174
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.50 E-value=0.19 Score=48.01 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=65.3
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHh----hCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCCCCCCcEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMR----SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 308 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 308 (369)
.+.++++.+|++.-+...++.+. ..+.++..++|+++..++...++...+|+.+|+|+|. .+...+++.++..||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 35689999999988776666554 3478999999999999999999999999999999998 344457778888888
Q ss_pred EecCC
Q 017573 309 NYDLP 313 (369)
Q Consensus 309 ~~~~~ 313 (369)
+-+..
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 76654
No 175
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.93 E-value=0.061 Score=45.33 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhh-hccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~liv~ 71 (369)
++++++.||+|+|||..+...+.... ..+. +++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~---~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV---STTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC---CEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC---cEEEEE
Confidence 57899999999999987654444333 3322 555554
No 176
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.92 E-value=0.1 Score=49.77 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.+|+|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 478999999999999775
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.87 E-value=1.5 Score=36.56 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
.++-+.+.++.|+|||..+...+......+ .+++++-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEec
Confidence 455677889999999976544333222222 2666655
No 178
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.75 E-value=0.18 Score=48.24 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.+|+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 478999999999999765
No 179
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.45 E-value=0.43 Score=41.96 Aligned_cols=80 Identities=10% Similarity=0.184 Sum_probs=64.3
Q ss_pred ccCCCeEEEeCCHhhHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCCc----CCCCCCCCc
Q 017573 233 LAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA----RGIDVQQVS 305 (369)
Q Consensus 233 ~~~~k~lv~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~----~G~d~~~~~ 305 (369)
..+.++++.+|++.-+..+++.+++ .+.++..++|+.+..++....+.+..|+.+|+|+|+..- .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3557899999999999999998888 577999999999998888888999999899999997221 114445777
Q ss_pred EEEEecC
Q 017573 306 LVINYDL 312 (369)
Q Consensus 306 ~vi~~~~ 312 (369)
.+|+-+.
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8876554
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.31 E-value=0.18 Score=48.31 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.0
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
++++.||+|+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998764
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.31 E-value=2.8 Score=35.54 Aligned_cols=29 Identities=10% Similarity=0.026 Sum_probs=19.9
Q ss_pred hhhhhhhccccCCcEEEEcCCCChhhHHHH
Q 017573 22 IQQRGIVPFCKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 22 ~Q~~~~~~~~~~~~~li~~~tG~GKT~~~~ 51 (369)
-+.+.+.. .....++|.||.|+|||..+.
T Consensus 20 ~el~~L~~-l~~~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 20 KEIEKLKG-LRAPITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp HHHHHHHH-TCSSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHH-hcCCcEEEECCCCCCHHHHHH
Confidence 33344444 333689999999999997653
No 182
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.06 E-value=0.085 Score=42.73 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
|.-+++.|++|+|||..++-.+.+.+..... +++|++-.. -..+..+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESSS-CHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--CceeecccC-CHHHHHHHHHH
Confidence 4668999999999998776666554433221 677776432 23444444443
No 183
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.97 E-value=0.17 Score=42.68 Aligned_cols=52 Identities=15% Similarity=-0.035 Sum_probs=33.8
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 85 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 85 (369)
+..|.-+++.|++|+|||..++..+.+....+ .+++|++.- .-..|+..++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHH
Confidence 44567799999999999987766666555443 278887743 23344444443
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.97 E-value=0.17 Score=40.34 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=26.5
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
+..|.-+++.+|+|+|||..+...+......+. +++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~---~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD---PCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC---CEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC---eEEEEEc
Confidence 455678899999999999765444433333222 6777654
No 185
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.57 E-value=0.24 Score=48.20 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~ 52 (369)
..++++.||+|+|||..+-.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35799999999999977543
No 186
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=91.54 E-value=0.39 Score=48.56 Aligned_cols=55 Identities=25% Similarity=0.171 Sum_probs=43.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhcc---------CCCccEEEEcCCHHHHHHHHHHHHHhc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYG---------LVQCQALVLAPTRELAQQIEKVMRALG 88 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~---------~~~~~~liv~P~~~l~~q~~~~~~~~~ 88 (369)
+..+|.|+.|||||.+...-++..+... -.-.++|+|+=|++-+.++.+++++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 4569999999999999887777777531 122379999999999999988887643
No 187
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.50 E-value=0.21 Score=39.54 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=21.8
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGL 62 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~ 62 (369)
++++.++.|+|||..++..+......+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 5899999999999987766666555543
No 188
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=91.46 E-value=0.15 Score=51.51 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=36.4
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
-+|.|+.|||||.+++--+...+..+..+.+++++||... .-++.+.+.+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~ 53 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAK 53 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHH
Confidence 3789999999999988888777766555458999999753 3334444443
No 189
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.33 E-value=3.5 Score=36.25 Aligned_cols=36 Identities=22% Similarity=0.077 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
++-+.+.++.|+|||+.+...+...... +.+++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEee
Confidence 4457788999999998765444333222 22666665
No 190
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.26 E-value=2 Score=31.90 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=52.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++..+..+.+.+.+. +..+..++++.........+ .+...|+|+|. . ...+++...+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcCCE
Confidence 8999999999999888888775 67888899887655544332 35678999992 2 233566666777
Q ss_pred EEEech
Q 017573 142 FVLDEA 147 (369)
Q Consensus 142 viiDE~ 147 (369)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 776443
No 191
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.26 E-value=0.22 Score=42.73 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=29.4
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
.+.-+++.+++|+|||..++..+.+....+. +++|+..-.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 3466899999999999888766665554433 788887643
No 192
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.19 E-value=0.22 Score=42.73 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
|.-+++.+|+|+|||..++..+......+. +++|+....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECCC
Confidence 466899999999999887666655554432 788887543
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.02 E-value=0.18 Score=45.61 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=24.1
Q ss_pred Hhhhhhhhc-cccCCcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 21 AIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 21 ~~Q~~~~~~-~~~~~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
+.+.+.+.. +..+..+++.||||||||+.. .+++..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 333334433 346788999999999999653 3444444
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.98 E-value=0.31 Score=41.33 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhc---cCCCccEEEEcCCHHH-HHHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTREL-AQQIEKVMRA 86 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~---~~~~~~~liv~P~~~l-~~q~~~~~~~ 86 (369)
|.-+++.||+|+|||..++..+.+.... +..+.+++|+.--..+ ..+..+.+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999998776665554322 1113378888765432 3334433433
No 195
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.94 E-value=0.26 Score=42.60 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
...++++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45789999999999998763
No 196
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.77 E-value=0.27 Score=43.72 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 78 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 78 (369)
...+++|.|+||+|||..+-..+.+.+..+. .++|+=|..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~---~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGD---RMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTC---EEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCC---cEEEEeCCCchhH
Confidence 3589999999999999875333333333332 6777778766643
No 197
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.77 E-value=0.2 Score=42.99 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
|.-++|.+|+|+|||..++..+......+. +++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg---~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG---VAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEeccccc
Confidence 355799999999999876655554433332 78888765443
No 198
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.72 E-value=2.9 Score=37.18 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=20.7
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQ 56 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~ 56 (369)
+.+|+..++.++.|+|||..+...+.+
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhh
Confidence 346889999999999999776544443
No 199
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.66 E-value=0.27 Score=41.15 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997753
No 200
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.61 E-value=2.1 Score=31.84 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=51.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCcc
Q 017573 65 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIK 140 (369)
Q Consensus 65 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~ 140 (369)
.++||.|+++..+....+.+.+. +..+..++++.........+ .+...|+|+|. . ...+++...++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccCC
Confidence 38999999999999888888764 67788889887755544332 35678999992 2 23456666677
Q ss_pred EEEEech
Q 017573 141 MFVLDEA 147 (369)
Q Consensus 141 ~viiDE~ 147 (369)
+||.-+.
T Consensus 101 ~Vi~~~~ 107 (165)
T 1fuk_A 101 LVINYDL 107 (165)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 7766443
No 201
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.57 E-value=0.24 Score=38.62 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=17.3
Q ss_pred EEEEcCCCChhhHHHHHHHHHh
Q 017573 36 VIQQAQSGTGKTATFCSGILQQ 57 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~ 57 (369)
.++.|++|||||..+...+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5899999999998876555443
No 202
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.57 E-value=0.33 Score=39.70 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999765
No 203
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.41 E-value=0.28 Score=43.66 Aligned_cols=40 Identities=18% Similarity=-0.027 Sum_probs=29.7
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
..|.-+++.|++|+|||..++-.+.+....+ .+++|++.-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECC
Confidence 3456789999999999988777766665543 278887643
No 204
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.38 E-value=1.5 Score=33.13 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=51.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCcc
Q 017573 65 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIK 140 (369)
Q Consensus 65 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~ 140 (369)
.++||.|+++..+..+.+.+.+. +..+..++++.........+ .+..+|+|+|. ....+++...++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCC
Confidence 38999999999998888887764 67888899887765544332 35788999993 223456666677
Q ss_pred EEEE
Q 017573 141 MFVL 144 (369)
Q Consensus 141 ~vii 144 (369)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 205
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.37 E-value=0.22 Score=39.12 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=26.6
Q ss_pred CcHhhhhhhhccccCCcEEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~ 50 (369)
-+..|..+++.+..|+-+.+.+|.|+|||+.+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34457788888888999999999999999653
No 206
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.37 E-value=1.2 Score=41.30 Aligned_cols=122 Identities=8% Similarity=0.072 Sum_probs=80.7
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHH--hcCCCcEEEEecC-Cc----------CCCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF--RSGSSRVLITTDL-LA----------RGIDV 301 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vli~t~~-~~----------~G~d~ 301 (369)
.+.+||.+|.+..++...+.|.+.+..+..++|+.+..++..+...+ ..+..+|+++|+. +. ...+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 46899999999999999999999899999999999999988888888 4678899999982 21 11223
Q ss_pred CCCcEEEEecCC----CC--ccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhcc
Q 017573 302 QQVSLVINYDLP----TQ--PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 356 (369)
Q Consensus 302 ~~~~~vi~~~~~----~~--~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (369)
..++.+|+-+.. |. ...-...++...+.......+.+...........+.+.+..
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~ 224 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI 224 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC
T ss_pred cCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC
Confidence 456666654321 11 12222333433332223445555555566666666666654
No 207
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.33 E-value=0.15 Score=39.47 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
.++.+++.+|||+|||..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46778999999999997654
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.32 E-value=0.15 Score=39.74 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
..+++.+|+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999775
No 209
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.31 E-value=0.2 Score=38.41 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
...+++.||+|+|||..+-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999997754
No 210
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.14 E-value=4.1 Score=31.21 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=51.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++.-+..+.+.+.+. ++.+..++|+.........+ .+...|+|+| ..+. .+++...++.
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCCE
Confidence 8999999999999888888765 67888899887655544332 3578899999 3333 3466666777
Q ss_pred EEEec
Q 017573 142 FVLDE 146 (369)
Q Consensus 142 viiDE 146 (369)
||.-+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 77633
No 211
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.09 E-value=0.31 Score=42.01 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
+.-++|.+++|+|||..++..+.+....+. +++|+..-..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECCCC
Confidence 466899999999999887766665544332 7888876543
No 212
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.07 E-value=1.5 Score=44.08 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=63.1
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-CCcCCCCCCCCcEEE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 308 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 308 (369)
.+.+++|.+|+...+...++.+.+ .+.++..+++..+..++...++...+|+.+|+|+|. .+...+.+.++..||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999888777766653 357889999999999999999999999999999996 555557777787777
Q ss_pred Eec
Q 017573 309 NYD 311 (369)
Q Consensus 309 ~~~ 311 (369)
+-.
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 544
No 213
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.02 E-value=2.2 Score=34.31 Aligned_cols=75 Identities=11% Similarity=0.254 Sum_probs=52.7
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-C------cCCCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L------ARGIDVQ 302 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~------~~G~d~~ 302 (369)
...++++.++++..+..+++.+++. +..+..++|+.+.......+ .+..+|+|+|+. + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999888877766554 67888899987765543332 246789999962 1 1346777
Q ss_pred CCcEEEEecC
Q 017573 303 QVSLVINYDL 312 (369)
Q Consensus 303 ~~~~vi~~~~ 312 (369)
.++.+|+-+.
T Consensus 186 ~~~~lViDEa 195 (249)
T 3ber_A 186 ALKYLVMDEA 195 (249)
T ss_dssp TCCEEEECSH
T ss_pred ccCEEEEcCh
Confidence 7888876543
No 214
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.99 E-value=0.39 Score=41.95 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=28.8
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
.+.+++|.+++|+|||..+-..+...... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCCcC
Confidence 57899999999999997754444433332 237888777654
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.98 E-value=0.32 Score=38.37 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=25.9
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
+..|.-+++.+|+|+|||..+...+. ..+ .+++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~---~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LSG---KKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HHC---SEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---HcC---CcEEEEECC
Confidence 44567789999999999977654444 222 267777643
No 216
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.98 E-value=0.91 Score=35.72 Aligned_cols=74 Identities=8% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-C-----cCCCCCCCC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQV 304 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~~ 304 (369)
.++++.+++++.+..+++.+++. +..+..++|+.+.....+. +..+..+|+|+|+. + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999988887777654 6788899998876654433 34566789999962 1 233567778
Q ss_pred cEEEEecC
Q 017573 305 SLVINYDL 312 (369)
Q Consensus 305 ~~vi~~~~ 312 (369)
+.+|+-+.
T Consensus 160 ~~lViDEa 167 (220)
T 1t6n_A 160 KHFILDEC 167 (220)
T ss_dssp CEEEEESH
T ss_pred CEEEEcCH
Confidence 88886554
No 217
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.85 E-value=0.41 Score=40.49 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhcc---------CCC----ccEEEEcCCHHH-HHHHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYG---------LVQ----CQALVLAPTREL-AQQIEKVMRA 86 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~---------~~~----~~~liv~P~~~l-~~q~~~~~~~ 86 (369)
+.-+++.+++|+|||..++..+.+..... ..+ .+++|+.--..+ ..+..+.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999988766655432111 111 478888765432 3444444443
No 218
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.85 E-value=0.35 Score=41.11 Aligned_cols=52 Identities=27% Similarity=0.242 Sum_probs=33.8
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
-+..|.-+++.|++|+|||..++..+.+....+ .+++|++.-. -..|+..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CEEEEEESSS-CHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCC-CHHHHHHHH
Confidence 344567799999999999988776666555433 2788876532 233444433
No 219
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.83 E-value=0.21 Score=38.91 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=17.2
Q ss_pred ccCCcEEEEcCCCChhhHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~ 51 (369)
..++.+++.|++|+|||..+-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999998763
No 220
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.78 E-value=2.3 Score=28.48 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=66.8
Q ss_pred EEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC--CcCCC-----CCCCCcEEEEec
Q 017573 239 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--LARGI-----DVQQVSLVINYD 311 (369)
Q Consensus 239 lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~--~~~G~-----d~~~~~~vi~~~ 311 (369)
++|.+..+-...+.+.+++.|..+..++++.+...|.+-++.|.....++--.-+. ..+.+ -.|.++.|++..
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivt 85 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVT 85 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 57788888889999999999999999999999999999999997644433222110 00000 136677776654
Q ss_pred CCC--CccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhc
Q 017573 312 LPT--QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 312 ~~~--~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
... -..+|+... .- ..-.+++.+.+.|....+..++-+.
T Consensus 86 tddkewikdfieea---ke--rgvevfvvynnkdddrrkeaqqefr 126 (162)
T 2l82_A 86 TDDKEWIKDFIEEA---KE--RGVEVFVVYNNKDDDRRKEAQQEFR 126 (162)
T ss_dssp CCCHHHHHHHHHHH---HH--TTCEEEEEEECSCHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHH---Hh--cCcEEEEEecCCCchhHHHHHHHhh
Confidence 321 011222211 11 1135666666666555555544443
No 221
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.71 E-value=0.98 Score=45.19 Aligned_cols=79 Identities=10% Similarity=0.208 Sum_probs=64.2
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-CcC---CCCCCCCcE
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LAR---GIDVQQVSL 306 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~---G~d~~~~~~ 306 (369)
.+.++||.+|++.-+..+++.+++ .+..+..++|+.+..++...++.+.+|+.+|+|+|+. +.. -++...++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999988 4678999999999988888999999999999999972 211 134567888
Q ss_pred EEEecC
Q 017573 307 VINYDL 312 (369)
Q Consensus 307 vi~~~~ 312 (369)
+|+-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 886554
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.53 E-value=0.25 Score=38.63 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.4
Q ss_pred ccccCCcEEEEcCCCChhhHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~ 50 (369)
++..++-+++.||+|+|||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999765
No 223
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.41 E-value=0.27 Score=37.46 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=17.6
Q ss_pred ccCCcEEEEcCCCChhhHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~ 51 (369)
..++.+++.|++|+|||..+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998753
No 224
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.33 E-value=2.6 Score=32.93 Aligned_cols=69 Identities=29% Similarity=0.398 Sum_probs=51.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++.-++...+.+.+. +..+..++|+.........+ .+..+|+|+| .. ...+++...+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~-~~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DV-AARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TT-TTCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Ch-hhcCCCCccCcE
Confidence 8999999999999888888765 77888999987765554333 3567899999 22 334566777787
Q ss_pred EEE
Q 017573 142 FVL 144 (369)
Q Consensus 142 vii 144 (369)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 225
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.12 E-value=0.19 Score=42.81 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=19.3
Q ss_pred hccccCCcEEEEcCCCChhhHHHH
Q 017573 28 VPFCKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 28 ~~~~~~~~~li~~~tG~GKT~~~~ 51 (369)
..+..++++++.||+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 334567899999999999997653
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.00 E-value=0.24 Score=41.31 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
...+++.||+|+|||..+-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999997753
No 227
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.96 E-value=0.26 Score=37.71 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.|++|+|||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998764
No 228
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.95 E-value=0.44 Score=41.88 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=27.9
Q ss_pred Hhhhhhhhccc--cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 21 AIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 21 ~~Q~~~~~~~~--~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
+-+..++..+. .+..++|.+|||||||+.. .+++..+... ..+++++
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~--~g~I~~~ 201 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSS--ERNILTV 201 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCT--TSCEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCC--CCEEEEe
Confidence 34555555544 3456899999999999653 3444444332 2255554
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.68 E-value=0.22 Score=42.11 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChhhHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~ 52 (369)
+-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999977643
No 230
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.68 E-value=0.21 Score=37.92 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+.-+++.|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 231
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.60 E-value=0.4 Score=43.26 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=21.1
Q ss_pred hhhhhccccCCcEEEEcCCCChhhHHH
Q 017573 24 QRGIVPFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 24 ~~~~~~~~~~~~~li~~~tG~GKT~~~ 50 (369)
..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 334445566899999999999999765
No 232
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.51 E-value=0.49 Score=38.10 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=20.0
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGI 54 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~ 54 (369)
-+..|.-+.+.+|+|+|||..+...+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44567889999999999997654333
No 233
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.48 E-value=0.24 Score=40.47 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.7
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..|+-+.+.+|+|||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 556788999999999999653
No 234
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.35 E-value=0.36 Score=41.80 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=20.2
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
+..++.+++.+|||||||... ..++..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll-~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI-ASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH-HHHHhhcC
Confidence 345678999999999999664 33443433
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.35 E-value=0.21 Score=37.68 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.35 E-value=0.52 Score=39.33 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhh-ccCCCccEEEEc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLD-YGLVQCQALVLA 71 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~-~~~~~~~~liv~ 71 (369)
.++-+.+.+++|+|||..+...+..... .+ .+++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---KKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CEEEEEe
Confidence 3567899999999999876544433322 22 2566654
No 237
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.33 E-value=0.47 Score=40.56 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhcc---CCCccEEEEcCCH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTR 74 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~liv~P~~ 74 (369)
|.-+++.||+|+|||..++..+.+..... ..+.+++|+....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35579999999999987766555433211 1233788887654
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.16 E-value=0.33 Score=37.04 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.|+-+.+.||+|+|||..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999764
No 239
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.06 E-value=0.38 Score=41.31 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDY 60 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~ 60 (369)
.+..+++.||||||||... -.++..+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhcccC
Confidence 4567899999999999653 344444443
No 240
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.94 E-value=6.2 Score=36.12 Aligned_cols=100 Identities=9% Similarity=0.081 Sum_probs=65.8
Q ss_pred CCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCc
Q 017573 41 QSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVH 116 (369)
Q Consensus 41 ~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~ 116 (369)
+....+....+..+...+.....+.++||.|+++.-+..+++.+.+.... +..+..++++......... ..+..+
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 33344444444444444444344458999999999999999988876432 6778888888776554433 235788
Q ss_pred EEEeccHHHHHHHHcCCCCCCCccEEEEech
Q 017573 117 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 147 (369)
Q Consensus 117 iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~ 147 (369)
|+|+|. ....+++...+++||.-..
T Consensus 395 vLvaT~------~~~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 395 ILVCTD------VGARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp EEEECG------GGTSSCCCTTCCEEEEESC
T ss_pred EEEEcc------hhhcCCCcccCCEEEEECC
Confidence 999993 3344677777888775543
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.88 E-value=0.26 Score=37.88 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.3
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..|.-+.+.||+|+|||+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 445677899999999999764
No 242
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.85 E-value=1.4 Score=40.09 Aligned_cols=121 Identities=11% Similarity=0.048 Sum_probs=79.7
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-Cc-C----CCCCCCCcEEE
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LA-R----GIDVQQVSLVI 308 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~-~----G~d~~~~~~vi 308 (369)
.+++||.+|.+.-+....+.|+..+..+..+++..+..++.........|..+++++|+- +. . .++...++.+|
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 468999999999999999999999999999999999999888899999999999999972 21 1 12334555666
Q ss_pred EecCC----CC--ccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhc
Q 017573 309 NYDLP----TQ--PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 309 ~~~~~----~~--~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
+-+.. |. .......+++..+.-.....+.+...........+.+.+.
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLG 197 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHT
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhC
Confidence 54321 11 1111233444332222234454555555555555665554
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.71 E-value=0.35 Score=37.93 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.|+-+++.||+|+|||..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999765
No 244
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.58 E-value=0.77 Score=41.40 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
.++.+++|.++||||||.+.-..+...+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999977544444333
No 245
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.56 E-value=1.9 Score=32.94 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=49.2
Q ss_pred CChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHH----HHHccCCcEE
Q 017573 43 GTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILQAGVHVV 118 (369)
Q Consensus 43 G~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~ii 118 (369)
...|-.. +.-++.... .+.++||.|+++.-+..+.+.+... +..+..++|+.+..... ....+...|+
T Consensus 29 ~~~K~~~-L~~ll~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATG---KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHhcC---CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3466543 334443322 2348999999999999888888764 67788888766543332 2234577899
Q ss_pred EeccHHHHHHHHcCCCCCCCccEEEE
Q 017573 119 VGTPGRVFDMLRRQSLRPDYIKMFVL 144 (369)
Q Consensus 119 v~t~~~l~~~~~~~~~~~~~~~~vii 144 (369)
|+|. . + ..+++...+++||.
T Consensus 101 vaT~-~----~-~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA-V----A-ARGLDISNVKHVIN 120 (185)
T ss_dssp EEEC------------CCCSBSEEEE
T ss_pred EEcC-h----h-hcCCCcccCCEEEE
Confidence 9992 2 2 22345556677765
No 246
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.52 E-value=0.65 Score=38.65 Aligned_cols=42 Identities=17% Similarity=-0.021 Sum_probs=26.8
Q ss_pred ccccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
.+..|.-+++.||+|+|||..+...+....... +.+++++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 345678899999999999976544443332221 225766654
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.50 E-value=1 Score=37.02 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=29.5
Q ss_pred hccccCCcEEEEcCCCChhhHHHHHHHHHhhhccC--------CCccEEEEcCCH
Q 017573 28 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL--------VQCQALVLAPTR 74 (369)
Q Consensus 28 ~~~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~--------~~~~~liv~P~~ 74 (369)
.-+..|.-+++.+|+|+|||..+...+. .+..+. ...+++++....
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEECCC
Confidence 3455678899999999999977655444 333320 022677776543
No 248
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.48 E-value=0.35 Score=39.43 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=15.0
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.||+|+|||..+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998764
No 249
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.37 E-value=0.33 Score=39.48 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999765
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.32 E-value=0.39 Score=37.34 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.31 E-value=0.49 Score=42.91 Aligned_cols=52 Identities=10% Similarity=-0.085 Sum_probs=33.8
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 84 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 84 (369)
+..|.-++|.|++|+|||..++..+.+..... +.+++|+.--. -..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC-CHHHHHHHH
Confidence 34567789999999999988776666655431 22788876532 234444443
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.29 E-value=0.34 Score=40.53 Aligned_cols=19 Identities=26% Similarity=0.101 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChhhHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~ 52 (369)
+-++|.||||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3478999999999977643
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.27 E-value=0.39 Score=36.76 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999876
No 254
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.22 E-value=0.38 Score=41.53 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
+.+++.||+|+|||..+-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 579999999999998754
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.19 E-value=0.44 Score=35.88 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+..+.+.|++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999765
No 256
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.05 E-value=0.36 Score=40.31 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.9
Q ss_pred cEEEEcCCCChhhHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~ 52 (369)
-++|.||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478999999999977643
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.02 E-value=0.36 Score=39.25 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=14.3
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
-+++.||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999998764
No 258
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.00 E-value=0.56 Score=39.30 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468999999999997763
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.95 E-value=0.41 Score=37.26 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.9
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..|.-+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677899999999999765
No 260
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.87 E-value=0.56 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
....+++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999775
No 261
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.83 E-value=3.5 Score=31.80 Aligned_cols=117 Identities=11% Similarity=0.085 Sum_probs=65.7
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-----CcC-CCCCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LAR-GIDVQQ 303 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~-G~d~~~ 303 (369)
..++++.+|++..+..+.+.+.+. +..+..++|+.+..+.... + .+..+|+|+|+. +.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999888877776543 5678888888766543222 2 346789999961 222 245667
Q ss_pred CcEEEEecCCC-CccchhhhhcccccC-CCceeEEEEeccccHHHHHHHHHHhc
Q 017573 304 VSLVINYDLPT-QPENYLHRIGRSGRF-GRKGVAINFVTRDDERMLFDIQKFYN 355 (369)
Q Consensus 304 ~~~vi~~~~~~-~~~~~~Q~~GR~~R~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (369)
++.+|+-+... ....+...+.+..+. .+....+.+...-..+..+-+.+++.
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 88887654321 111233333333222 12234444444444444444555554
No 262
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.70 E-value=0.43 Score=37.10 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=16.7
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..|.-+.+.||+|+|||+.+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35677899999999999764
No 263
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.58 E-value=0.25 Score=41.46 Aligned_cols=25 Identities=20% Similarity=0.031 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQ 56 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~ 56 (369)
.+..+++.+|+|+|||..++..+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3455799999999999877655443
No 264
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.57 E-value=0.38 Score=41.50 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.6
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..|+.+.+.+|+|+|||..+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 346889999999999999653
No 265
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.53 E-value=0.64 Score=35.26 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=40.9
Q ss_pred cHhhhhhhhccccC--CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHH
Q 017573 20 SAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 79 (369)
Q Consensus 20 ~~~Q~~~~~~~~~~--~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 79 (369)
.+-|..++..+... +-.++.++-|++|+...+..++...... +..+.+++|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--CeEEEEEcCchHHHHH
Confidence 35688888888754 4578999999999987554544443332 3389999999765443
No 266
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.49 E-value=0.43 Score=42.65 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3689999999999998764
No 267
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.48 E-value=0.66 Score=48.91 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 76 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 76 (369)
.++.+++.+|+|+|||..+...+.+....+. +++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEccccc
Confidence 3688999999999999888777766655444 78888876443
No 268
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.31 E-value=3.3 Score=31.09 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=51.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++..+..+.+.+.+. +..+..++++.........+ .+...|+|+|. . ...+++...+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhCCE
Confidence 8999999999999888888775 67888889887655543332 35788999993 1 233455555677
Q ss_pred EEEech
Q 017573 142 FVLDEA 147 (369)
Q Consensus 142 viiDE~ 147 (369)
||.-+.
T Consensus 103 Vi~~d~ 108 (172)
T 1t5i_A 103 AFNYDM 108 (172)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 765443
No 269
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.25 E-value=8.9 Score=35.29 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEe
Q 017573 45 GKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVG 120 (369)
Q Consensus 45 GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~ 120 (369)
.+....+..+...+.....+.++||.|+++.-++.+++.+.+.... +..+..++++......... ..+..+|+|+
T Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 269 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 3333333344444443334448999999999999999988876432 6778888888776554333 2457889999
Q ss_pred ccHHHHHHHHcCCCCCCCccEEEEechh
Q 017573 121 TPGRVFDMLRRQSLRPDYIKMFVLDEAD 148 (369)
Q Consensus 121 t~~~l~~~~~~~~~~~~~~~~viiDE~H 148 (369)
|. . ...+++...+++||.-..-
T Consensus 348 T~-----~-~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 348 TD-----V-GARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp CG-----G-GTSSCCCTTCCEEEEESCC
T ss_pred cc-----h-hhcCCCcccCCEEEEcCCC
Confidence 93 3 3345777778887765543
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.19 E-value=0.32 Score=37.19 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||+.+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 271
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.15 E-value=0.5 Score=36.00 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=24.9
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHH
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 86 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 86 (369)
++|.+++|||||..+...+. . +.+++|+......-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~-----~--~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG-----D--APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC-----S--CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh-----c--CCCeEEEecCCCCCHHHHHHHHH
Confidence 68999999999976643321 1 22678888765444444444443
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.14 E-value=0.44 Score=35.77 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|+|||+++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 273
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.07 E-value=4.1 Score=36.73 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=23.5
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
.+.+.+++|+|||..+...+......+ .+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 578899999999987654444333222 26777765
No 274
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.00 E-value=1 Score=49.70 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCCCcHhhhhhhhccc----cCCcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEcCCHH
Q 017573 5 ENLLRGIYAYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRE 75 (369)
Q Consensus 5 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~----~~~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~ 75 (369)
+.|.....+.|+ ++.+.+..=+-++. ....+++.||||+|||.++-.. ..++.. ........++-|..-
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L-~~al~~l~~~~~~~~~iNPKai 948 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY-LEAIEQVDNIKSEAHVMDPKAI 948 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH-HHHHTTTTTCEEEEEEECTTTS
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH-HHHHHHhhCCCceEEEECCCCC
Confidence 445666677776 66666654443443 4678999999999999875322 222221 111224556667543
No 275
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.97 E-value=0.3 Score=39.98 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999997764
No 276
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.95 E-value=0.48 Score=41.08 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999997763
No 277
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.91 E-value=0.76 Score=38.47 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
++-+.+.+++|+|||+.+...+...... +.+++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 3457899999999997764443322222 22666654
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.87 E-value=0.47 Score=35.95 Aligned_cols=16 Identities=19% Similarity=0.271 Sum_probs=14.0
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999875
No 279
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.85 E-value=0.48 Score=35.51 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
+++++.+++|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 678999999999998763
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.84 E-value=0.32 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.1
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+.+|.-+.+.||.|||||..+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 345677899999999999764
No 281
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.54 E-value=1.4 Score=34.96 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=51.6
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-C-----cCCCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQ 302 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~ 302 (369)
...++++.+++++.+..+++.+++. +..+..++|+.+...+...+ ...+|+|+|+. + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999998888877654 56788899988766554432 25789999972 1 1235666
Q ss_pred CCcEEEEec
Q 017573 303 QVSLVINYD 311 (369)
Q Consensus 303 ~~~~vi~~~ 311 (369)
.++.+|+-+
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 777777654
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.35 E-value=0.58 Score=36.26 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677899999999999764
No 283
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.35 E-value=0.48 Score=39.87 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChhhHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~ 52 (369)
+.+++.||||+|||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3589999999999987643
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.31 E-value=0.55 Score=35.98 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||+.+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 285
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.27 E-value=1 Score=49.11 Aligned_cols=45 Identities=24% Similarity=0.127 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCCcHhhhhhh----hccccCCcEEEEcCCCChhhHHHH
Q 017573 6 NLLRGIYAYGFEKPSAIQQRGI----VPFCKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 6 ~i~~~l~~~~~~~~~~~Q~~~~----~~~~~~~~~li~~~tG~GKT~~~~ 51 (369)
.+...+.+.++ ++.+.+..-+ +.+.....+++.||||+|||.++-
T Consensus 893 ~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 893 CLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 45555666666 4566553333 333456889999999999998753
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.23 E-value=0.86 Score=38.47 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
++-+.+.++.|+|||+.+...+......+ .+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 45578899999999977644443322222 2666664
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.22 E-value=1.2 Score=40.72 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhcc-CCCccEEEEcCC
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPT 73 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~liv~P~ 73 (369)
+..+++|.+.||||||.+.-..++..+... +...+++++=|.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 457899999999999987655555544332 223345555454
No 288
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.18 E-value=0.57 Score=40.31 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998763
No 289
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=85.10 E-value=1.1 Score=36.46 Aligned_cols=51 Identities=10% Similarity=0.082 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHh
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 87 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 87 (369)
+..+++.+++|+|||..++..+.+.+..+. +++|++-. +-..++.+.+..+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHc
Confidence 456788878888888666666676666655 78887754 3445555666655
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.06 E-value=0.59 Score=36.27 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
.+..+++.|++|||||+.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999998753
No 291
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.01 E-value=0.58 Score=36.94 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.5
Q ss_pred ccCCcEEEEcCCCChhhHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~ 51 (369)
.+.+-+++.+|+||||++.+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 344567889999999998764
No 292
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.96 E-value=0.38 Score=40.86 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.8
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..++.+.+.+|+|||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688999999999999964
No 293
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.93 E-value=5.9 Score=34.44 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=52.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCc
Q 017573 64 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYI 139 (369)
Q Consensus 64 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~ 139 (369)
+.++||.|+++.-++.+.+.+.+. +..+..++++.......... .+..+|+|+| ..+. .+++...+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccC
Confidence 348999999999999888888774 67888899887765544332 3577899999 3333 35677777
Q ss_pred cEEEE
Q 017573 140 KMFVL 144 (369)
Q Consensus 140 ~~vii 144 (369)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 77765
No 294
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.84 E-value=1 Score=34.40 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
.+..+++.|++|+|||..+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999998754
No 295
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.80 E-value=4.4 Score=31.18 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-----Cc-CCCCCCCCcE
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LA-RGIDVQQVSL 306 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~-~G~d~~~~~~ 306 (369)
..++++.+|++..+..+++.+++. +..+..++|+.+.......+. ...+|+|+|+. +. ..+++..++.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999888888765 356778888776554433332 24679999961 11 2356677888
Q ss_pred EEEecC
Q 017573 307 VINYDL 312 (369)
Q Consensus 307 vi~~~~ 312 (369)
+|+-+.
T Consensus 148 iViDEa 153 (207)
T 2gxq_A 148 AVLDEA 153 (207)
T ss_dssp EEEESH
T ss_pred EEEECh
Confidence 876543
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.80 E-value=0.47 Score=37.04 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=19.3
Q ss_pred hhhccccCCcEEEEcCCCChhhHHH
Q 017573 26 GIVPFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 26 ~~~~~~~~~~~li~~~tG~GKT~~~ 50 (369)
.++.+..+.-+.+.|++|+|||..+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHH
Confidence 3445555677899999999999765
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.79 E-value=0.47 Score=37.58 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=16.7
Q ss_pred ccccCCcEEEEcCCCChhhHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~ 50 (369)
++..|+-+.+.||.|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 4566788999999999999653
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.75 E-value=0.38 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+..+.+.|++|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556899999999999765
No 299
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.43 E-value=0.6 Score=35.95 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.2
Q ss_pred ccCCcEEEEcCCCChhhHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~ 51 (369)
..+..+++.|++|||||.++-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345679999999999998763
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.42 E-value=0.52 Score=36.20 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 301
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.41 E-value=0.91 Score=40.10 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=24.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
..+++.+++|+|||..+...+......+. +++++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~---kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGL---KPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHC---CEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEec
Confidence 46889999999999876555444433333 6777763
No 302
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.29 E-value=1.1 Score=38.75 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.2
Q ss_pred ccccCCcEEEEcCCCChhhHHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~~ 51 (369)
.+..|+.+.+.+|+|+|||..+.
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHH
Confidence 34568999999999999997653
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.19 E-value=0.62 Score=37.75 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+++++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999764
No 304
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.10 E-value=0.6 Score=39.61 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.2
Q ss_pred cEEEEcCCCChhhHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~ 52 (369)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999987643
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.98 E-value=0.7 Score=35.86 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+.+.||+|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4577899999999999765
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.97 E-value=0.59 Score=35.87 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+-+++.||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=83.88 E-value=0.78 Score=36.23 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.5
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..|+-+.+.||+|+|||..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346788999999999999654
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.85 E-value=0.73 Score=34.79 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.8
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.+++|||||.++-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999998763
No 309
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.59 E-value=0.8 Score=35.81 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.8
Q ss_pred EEEEcCCCChhhHHHH
Q 017573 36 VIQQAQSGTGKTATFC 51 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~ 51 (369)
+++.||+||||++.+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998764
No 310
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.49 E-value=1.2 Score=38.54 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.0
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
+-+|+..+|.++.|+|||..+ ..+.+.+.
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll-~~Ia~~i~ 200 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTIL-KEIANGIA 200 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHH-HHHHHHHH
T ss_pred ccCCceEEEecCCCCChhHHH-HHHHHHHh
Confidence 446899999999999999776 34444444
No 311
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.19 E-value=0.84 Score=34.92 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+-+.+.||.|+|||..+
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.03 E-value=0.83 Score=35.40 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998753
No 313
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.96 E-value=1.1 Score=47.19 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=33.4
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCC
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 73 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~ 73 (369)
+..+.++++.+|+|+|||..+...+.+....+. +++|+.-.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge---~~~Fit~e 1118 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 1118 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEEcc
Confidence 446788999999999999998888887776654 78888754
No 314
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.86 E-value=0.68 Score=39.02 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+++.||+|+|||..+-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997753
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.84 E-value=0.53 Score=39.08 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.-+++.||+|||||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999997753
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.82 E-value=0.76 Score=35.68 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
.-+++.|++|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999775
No 317
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.79 E-value=0.78 Score=39.02 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999765
No 318
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.77 E-value=0.88 Score=35.72 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998763
No 319
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.71 E-value=0.77 Score=37.77 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+++++.||+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 55999999999999764
No 320
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.63 E-value=6.3 Score=31.38 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=51.8
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----CCc-CCCCCCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQV 304 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~-~G~d~~~~ 304 (369)
..++++.+|+++.+..+.+.+++ .+..+..++|+.+.......+.. ..+|+|+|+ .+. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999988877666654 37788899998887765544432 468999996 111 23567778
Q ss_pred cEEEEec
Q 017573 305 SLVINYD 311 (369)
Q Consensus 305 ~~vi~~~ 311 (369)
+.+|+-+
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8887654
No 321
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.57 E-value=0.86 Score=35.58 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.4
Q ss_pred ccCCcEEEEcCCCChhhHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~ 51 (369)
..+..+++.|++|||||+.+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHH
Confidence 456779999999999998763
No 322
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.57 E-value=0.85 Score=35.97 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||+.+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.50 E-value=0.95 Score=34.43 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+++.+++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999998763
No 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.49 E-value=0.89 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
...+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999998763
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.47 E-value=1.4 Score=38.99 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=24.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhc-cCCCccEEEEc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLA 71 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~liv~ 71 (369)
+.+++.++.|+|||+++...+...... +. +++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~---kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKK---KVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCC---CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC---eEEEEe
Confidence 357788999999998876555544433 32 677665
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.41 E-value=0.76 Score=36.11 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 327
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.34 E-value=1.3 Score=46.13 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=33.1
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 75 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 75 (369)
+..+..+++.+|+|+|||..++..+.+.+..+. +++|+.-...
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~te~~ 73 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 73 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEEecCc
Confidence 344688999999999999888777776665543 7899886543
No 328
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=82.32 E-value=1.3 Score=36.91 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
.+.-+.+.+|+|+|||+.+-. +...+... ++++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~-Lag~l~~~--~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK-LAHRLKNE--GTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH-HHHHHHHT--TCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHH-HHHHHHHc--CCeEEEEe
Confidence 455678999999999976432 22233222 22677665
No 329
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.31 E-value=0.92 Score=34.03 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
+.+++.+++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999998763
No 330
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.25 E-value=0.73 Score=35.94 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||..+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568999999999998753
No 331
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.21 E-value=0.75 Score=35.68 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.6
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..+.-+.+.||+|+|||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34677899999999999765
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=82.21 E-value=0.78 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.3
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|+|||+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997753
No 333
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.17 E-value=0.73 Score=40.06 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhhHHHHHH
Q 017573 35 DVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~ 53 (369)
-++|.||||+|||..+...
T Consensus 4 ~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHH
Confidence 4689999999999776433
No 334
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.08 E-value=0.66 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=13.5
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..|+-+.+.||+|+|||..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 446778899999999999764
No 335
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=81.93 E-value=0.78 Score=34.60 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCChhhHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGI 54 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~ 54 (369)
.++.+++.++.|+|||..++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 56889999999999997765443
No 336
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.89 E-value=1.7 Score=36.34 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
.+.-+.+.+|+|+|||+.+-. +...+... ++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~-Lagll~~~--~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAK-LGRYYQNL--GKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHH-HHHHHHTT--TCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHH-HHHHHHhc--CCEEEEEe
Confidence 356688999999999976432 22222222 22666655
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.75 E-value=0.87 Score=34.90 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998763
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.70 E-value=0.98 Score=35.25 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.8
Q ss_pred ccccCCcEEEEcCCCChhhHHH
Q 017573 29 PFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 29 ~~~~~~~~li~~~tG~GKT~~~ 50 (369)
.+.+|+-+.+.+|.|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999653
No 339
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.64 E-value=0.59 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999997753
No 340
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=81.63 E-value=0.88 Score=36.10 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 341
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.53 E-value=0.86 Score=37.51 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999764
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.53 E-value=2 Score=32.29 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=16.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
-+.+.++.|+|||..+. .++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~-~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME-KWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHhhH
Confidence 46889999999997643 3444443
No 343
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.41 E-value=5.3 Score=33.24 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=52.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++.-++.+.+.+.+. ++.+..++|+.........+ .+..+|+|+|. . ...+++...+++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccceeE
Confidence 8999999999888888777654 77889999987765544333 35788999992 2 334566777787
Q ss_pred EEEech
Q 017573 142 FVLDEA 147 (369)
Q Consensus 142 viiDE~ 147 (369)
||.=+.
T Consensus 100 VI~~d~ 105 (300)
T 3i32_A 100 VVHYRM 105 (300)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 775443
No 344
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.35 E-value=0.88 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+++.|++|||||.++-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999998753
No 345
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.35 E-value=1.2 Score=38.03 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhc---cCCCccEEEEcCC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPT 73 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~---~~~~~~~liv~P~ 73 (369)
|.-+.+.+|+|+|||..+...+...... +..+.+++++.-.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4567999999999997765444432111 1112366777643
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.30 E-value=0.77 Score=36.98 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
....+++.||+|||||+.+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568999999999998763
No 347
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.22 E-value=0.77 Score=39.33 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=17.4
Q ss_pred hccccCCc--EEEEcCCCChhhHHH
Q 017573 28 VPFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 28 ~~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+.+++|.+ ++..|.||||||.++
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 33445655 688899999999875
No 348
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=81.20 E-value=0.78 Score=36.35 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=18.6
Q ss_pred cccCCcEEEEcCCCChhhHHHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~ 53 (369)
+..|+-+.+.+|+|+|||..+...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 445677899999999999765433
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.08 E-value=0.61 Score=35.46 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=11.9
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 350
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=80.94 E-value=1 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChhhHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~ 51 (369)
...+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 351
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.86 E-value=1.8 Score=37.82 Aligned_cols=41 Identities=15% Similarity=-0.033 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhc---cCCCccEEEEcCC
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPT 73 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~---~~~~~~~liv~P~ 73 (369)
|.-+.|.+|+|+|||..+...++..... +..+.+++|+.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4668999999999997765444433321 1123368887654
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=80.69 E-value=1 Score=35.13 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCChhhHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~ 51 (369)
.+..+++.|++|||||..+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999998764
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.65 E-value=1 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
-+.+.+|+|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4689999999999765
No 354
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=80.64 E-value=0.95 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+++.|++|||||..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999875
No 355
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.57 E-value=1 Score=39.79 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999775
No 356
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.54 E-value=1.2 Score=38.05 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.4
Q ss_pred hhhccccCCc--EEEEcCCCChhhHHHH
Q 017573 26 GIVPFCKGLD--VIQQAQSGTGKTATFC 51 (369)
Q Consensus 26 ~~~~~~~~~~--~li~~~tG~GKT~~~~ 51 (369)
+++.+++|.+ ++..|.||||||.++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3445567766 5778999999998863
No 357
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=80.53 E-value=0.92 Score=42.00 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.6
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999764
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.51 E-value=1.1 Score=36.29 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
++.+.+.+++|+|||.++
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 899999999999999775
No 359
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.37 E-value=0.94 Score=35.55 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 360
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.18 E-value=1.1 Score=34.76 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.2
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36899999999997753
No 361
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=80.11 E-value=1.8 Score=36.04 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
++-+.+.+++|+|||..+...+......+ .+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 34577889999999977654443332222 2666665
No 362
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.06 E-value=3.7 Score=32.66 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=44.8
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----CCcC-CCCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQ 303 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~~-G~d~~~ 303 (369)
...++++.++++..+..+++.+++. +..+..+.|+.+... ..+.+..+..+|+|+|+ .+.. .++...
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999988888877654 456666777654332 23344556688999994 2222 356667
Q ss_pred CcEEEEec
Q 017573 304 VSLVINYD 311 (369)
Q Consensus 304 ~~~vi~~~ 311 (369)
++.+|+-+
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88887654
No 363
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.02 E-value=1.1 Score=40.82 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=23.9
Q ss_pred ccEEEEechhHhhccC--cHHHHHHHHhhCCccCcEEEEEeeC
Q 017573 139 IKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATM 179 (369)
Q Consensus 139 ~~~viiDE~H~~~~~~--~~~~~~~~~~~~~~~~~~i~~saT~ 179 (369)
..++++||+|.+.... ....+..++... ...+++++++.
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 5799999999986432 123444444432 34577777664
No 364
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=79.98 E-value=1.2 Score=38.13 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=19.6
Q ss_pred hhhccccCCc--EEEEcCCCChhhHHHH
Q 017573 26 GIVPFCKGLD--VIQQAQSGTGKTATFC 51 (369)
Q Consensus 26 ~~~~~~~~~~--~li~~~tG~GKT~~~~ 51 (369)
+++.+++|.+ ++..|.||||||.++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4455667766 5778999999998863
No 365
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=79.81 E-value=1.1 Score=33.32 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=14.0
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
.+++.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999875
No 366
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.68 E-value=0.83 Score=35.78 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred HhhhhhhhccccCCcEEEEcCCCChhhHHH
Q 017573 21 AIQQRGIVPFCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 21 ~~Q~~~~~~~~~~~~~li~~~tG~GKT~~~ 50 (369)
+.++... .+..+..+++.|++|+|||..+
T Consensus 14 ~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 3444443 3445677899999999999765
No 367
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.62 E-value=6.2 Score=31.20 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=48.9
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-C----cC--CCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L----AR--GIDVQ 302 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~----~~--G~d~~ 302 (369)
.+.++++.+|++..+..+.+.+++. +..+..++|+.+.......+ +..+|+|+|+. + .. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999988888777654 36788888887655433322 35789999962 1 11 35666
Q ss_pred CCcEEEEec
Q 017573 303 QVSLVINYD 311 (369)
Q Consensus 303 ~~~~vi~~~ 311 (369)
.++.+|+-+
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 777777654
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=79.62 E-value=0.84 Score=37.18 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
.-+++.|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 458999999999998753
No 369
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.56 E-value=1.2 Score=34.60 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
..+++.|++|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999875
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.51 E-value=1.2 Score=35.05 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+++.+++|||||..+-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998763
No 371
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=79.42 E-value=1.2 Score=37.16 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=16.8
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..|+.+.|.+|+|+|||..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 45788999999999999653
No 372
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=79.42 E-value=1 Score=38.01 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=21.6
Q ss_pred cHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 20 SAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 20 ~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3446555543 446765 688999999999875
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.39 E-value=1.1 Score=33.98 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+.+.+++|||||..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999765
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.33 E-value=1.3 Score=32.40 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
.-.+|.+|+|+|||.+.
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45789999999999763
No 375
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=79.31 E-value=8.9 Score=34.31 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=33.0
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC--CHHHHHHHHHHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP--TRELAQQIEKVMRA 86 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P--~~~l~~q~~~~~~~ 86 (369)
-+|+...|.++.|+|||..++-.+.+.... +..++|+.- +..-+.++.+.+.+
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~~---dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQKGQ---DVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGGSC---SEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhhcC---CcEEEEEECCCcchHHHHHHHHHhh
Confidence 358999999999999998876666665432 213333332 23344555555554
No 376
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.16 E-value=2 Score=36.21 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=25.5
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
-+++.+..|.|||+++...+......+. ++++|-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGK---KTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCC---cEEEEeC
Confidence 3577889999999988776665555443 7777764
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.14 E-value=1.2 Score=34.07 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.8
Q ss_pred EEEEcCCCChhhHHHH
Q 017573 36 VIQQAQSGTGKTATFC 51 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~ 51 (369)
+.+.|++|||||+.+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998753
No 378
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=79.12 E-value=7.8 Score=34.75 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC--CHHHHHHHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP--TRELAQQIEKVMRA 86 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P--~~~l~~q~~~~~~~ 86 (369)
+|+...|.++.|+|||..++-.+.+.... +..++|+.- +..-+.++.+.+.+
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~~~---dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQKGQ---GVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTTTT---TEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhhcC---CcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 58999999999999998876666665432 212333332 23344455555554
No 379
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=79.10 E-value=1.3 Score=39.76 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~ 52 (369)
..++++.||+|+|||..+-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999987643
No 380
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.90 E-value=2 Score=36.86 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
.+.-+.+.+|+|+|||+.+-. +...+... ++++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~-Lag~l~~~--~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGK-LAHRLKNE--GTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHH-HHHHHHHT--TCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHH-HHhhcccc--CCEEEEec
Confidence 355688999999999976432 22233322 22666665
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.81 E-value=1.3 Score=34.09 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.8
Q ss_pred EEEEcCCCChhhHHHH
Q 017573 36 VIQQAQSGTGKTATFC 51 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~ 51 (369)
+.+.|+.|||||+.+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998764
No 382
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.80 E-value=8.5 Score=33.03 Aligned_cols=74 Identities=8% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-C-----cCCCCCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQ 303 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~ 303 (369)
..++|+.+|++..+..+++.+++. +..+..++|+.+....... +..+..+|+|+|.. + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999988887777654 6788999998876655443 34566789999962 1 23356677
Q ss_pred CcEEEEec
Q 017573 304 VSLVINYD 311 (369)
Q Consensus 304 ~~~vi~~~ 311 (369)
++.||+-+
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88887654
No 383
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.75 E-value=0.98 Score=38.41 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=21.9
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 33446555544 345665 588899999999875
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=78.59 E-value=1.3 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.3
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998763
No 385
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.53 E-value=1.2 Score=38.45 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34456666643 345665 577899999999875
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.53 E-value=2.2 Score=38.82 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=27.2
Q ss_pred cccCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 74 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 74 (369)
+..|.-+++.+|+|+|||..+...+...... +.+++++++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeC
Confidence 3456778999999999997654433322222 32677777653
No 387
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=78.51 E-value=1.2 Score=38.18 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=21.6
Q ss_pred cHhhhhhhh--------ccccCCc--EEEEcCCCChhhHHH
Q 017573 20 SAIQQRGIV--------PFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 20 ~~~Q~~~~~--------~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
..-|.+.++ .+++|.+ ++..|.||||||.++
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 344655554 3446655 578899999999875
No 388
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.45 E-value=16 Score=34.22 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=55.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++..++.+.+.+.+. ++++..++++......... ..+..+|+|+|. ....+++...+++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v~l 516 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEVSL 516 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTEEE
T ss_pred eEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCCCE
Confidence 8999999999999888888775 6778888887665444433 235688999984 2345677777889
Q ss_pred EEEechhHh
Q 017573 142 FVLDEADEM 150 (369)
Q Consensus 142 viiDE~H~~ 150 (369)
||+-+++..
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 998887643
No 389
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=78.45 E-value=1.3 Score=34.42 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
.+.+.|++|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999875
No 390
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=78.41 E-value=2.1 Score=36.20 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+.-+.+.+|+|+|||+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999764
No 391
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.29 E-value=1.2 Score=38.16 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34447666644 345655 588899999999875
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=78.19 E-value=1.1 Score=35.80 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=16.3
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|||||+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4578889999999999964
No 393
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.10 E-value=1.1 Score=38.52 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=22.2
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34456666544 345655 578899999999875
No 394
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.08 E-value=1.3 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
..+.+.||+|||||+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999775
No 395
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=78.07 E-value=1.2 Score=38.05 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=22.4
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 44456666644 345655 588899999999875
No 396
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=78.06 E-value=2.4 Score=36.21 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=24.5
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
+++.+..|.|||+++...+......+. +++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGL---KVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSC---CEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 577788999999988766665555433 777776
No 397
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.04 E-value=1.1 Score=39.08 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=21.9
Q ss_pred cHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHHH
Q 017573 20 SAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATFC 51 (369)
Q Consensus 20 ~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~~ 51 (369)
..-|.+.++. +++|.+ ++..|.||||||.++.
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3446555543 345655 5788999999998863
No 398
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.86 E-value=1.5 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
.+.+.+|.|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999653
No 399
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=77.71 E-value=1.2 Score=38.21 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=22.0
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34456555543 445665 578999999999875
No 400
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.68 E-value=1.2 Score=37.61 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=17.6
Q ss_pred hccccCCc--EEEEcCCCChhhHHH
Q 017573 28 VPFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 28 ~~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+.+++|.+ ++..|.||||||.++
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 74 TSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34456765 578999999999875
No 401
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.67 E-value=1.2 Score=38.07 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=21.8
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 54 ~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 54 GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 33446555544 345655 578999999999875
No 402
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.63 E-value=1.2 Score=34.73 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+.-+.|.||+|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566889999999999654
No 403
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=77.60 E-value=1.2 Score=37.88 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=22.0
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+..-|.+.++. +++|.+ ++..+.||||||.++
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 33446665544 345665 578899999999875
No 404
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.55 E-value=1.2 Score=38.78 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=18.7
Q ss_pred hhccccCCc--EEEEcCCCChhhHHHH
Q 017573 27 IVPFCKGLD--VIQQAQSGTGKTATFC 51 (369)
Q Consensus 27 ~~~~~~~~~--~li~~~tG~GKT~~~~ 51 (369)
++.+++|.+ ++..|.||||||.++.
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHhCCcceEEEEECCCCCCCceEeC
Confidence 344556766 5788999999998863
No 405
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=77.54 E-value=4.3 Score=35.84 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=41.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEec
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 121 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t 121 (369)
+++|+||++.-++..++.+++. +.++..++++...........+..+|+|+|
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 8999999999999998888876 678888998755444444455788999999
No 406
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=77.54 E-value=2.6 Score=35.70 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=24.6
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 35 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
-+++.+..|.|||.++...+......+. +++++-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~---rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRS---SVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSS---CEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCC---eEEEEE
Confidence 3577889999999988766665554443 787774
No 407
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.45 E-value=0.95 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+.-+.+.||.|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3455789999999999764
No 408
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=77.37 E-value=1.1 Score=33.32 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.9
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566789999999999964
No 409
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=77.34 E-value=1.2 Score=38.11 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=17.6
Q ss_pred hccccCCc--EEEEcCCCChhhHHH
Q 017573 28 VPFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 28 ~~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+.+++|.+ ++..|.||||||.++
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHhCCceeEEEeeCCCCCCCceEE
Confidence 34456766 578899999999875
No 410
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.20 E-value=1.2 Score=38.08 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=16.7
Q ss_pred ccccCCc--EEEEcCCCChhhHHH
Q 017573 29 PFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 29 ~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
.+++|.+ ++..+.||||||.++
T Consensus 98 ~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 98 QALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCceEEEEECCCCCCCceEe
Confidence 3346765 577899999999875
No 411
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=77.14 E-value=1.3 Score=38.11 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=21.2
Q ss_pred Hhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 21 AIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 21 ~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
.-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 346665544 346765 578899999999875
No 412
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.11 E-value=3.1 Score=32.61 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=45.2
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCC------cCCCCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL------ARGIDVQQ 303 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~------~~G~d~~~ 303 (369)
...++++.++++..+..+++.+.+. +..+..++|+.+..+.... +. +.+|+|+|+.. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3458999999999988887776643 5678888887654443222 22 37899999621 23456667
Q ss_pred CcEEEEecC
Q 017573 304 VSLVINYDL 312 (369)
Q Consensus 304 ~~~vi~~~~ 312 (369)
++.+|+-+.
T Consensus 156 ~~~iViDEa 164 (224)
T 1qde_A 156 IKMFILDEA 164 (224)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEcCh
Confidence 888876543
No 413
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=76.97 E-value=13 Score=33.21 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc--CCHHHHHHHHHHHHH
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA--PTRELAQQIEKVMRA 86 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~--P~~~l~~q~~~~~~~ 86 (369)
+|+...|.++.|+|||..++-.+.++.. .+..++|+. -+..-+.++.+.+.+
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~~~---~dv~~V~~~IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQRD---SGIKCIYVAIGQKASTISNVVRKLEE 214 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTTSS---SSCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhhcc---CCceEEEEEecCChHHHHHHHHHHhh
Confidence 5899999999999999886656665422 221333332 233445555565655
No 414
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.89 E-value=18 Score=28.83 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=49.8
Q ss_pred CCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC-C-----cCCCCCCCC
Q 017573 235 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQV 304 (369)
Q Consensus 235 ~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~~ 304 (369)
..++|+.+++++.+..+.+.+++. +..+..++|+.+.......+ ....+|+|+|+. + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999888877776543 46777888877655433322 346789999962 1 123566778
Q ss_pred cEEEEecC
Q 017573 305 SLVINYDL 312 (369)
Q Consensus 305 ~~vi~~~~ 312 (369)
+.+|+-+.
T Consensus 176 ~~lViDEa 183 (253)
T 1wrb_A 176 KYIVLDEA 183 (253)
T ss_dssp CEEEEETH
T ss_pred CEEEEeCH
Confidence 88876543
No 415
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.78 E-value=1.9 Score=33.16 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
|+.+.+.+|.|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 356789999999999653
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.74 E-value=1.3 Score=35.48 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=16.7
Q ss_pred cccCCcEEEEcCCCChhhHH
Q 017573 30 FCKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~ 49 (369)
+..|+-+.+.+|.|+|||+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34678899999999999964
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=76.74 E-value=1.5 Score=34.01 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.9
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
.+.+.|++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999765
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.71 E-value=1.4 Score=34.59 Aligned_cols=20 Identities=35% Similarity=0.333 Sum_probs=16.8
Q ss_pred cccCCcEEEEcCCCChhhHH
Q 017573 30 FCKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~ 49 (369)
+..|+-+.+.+|.|+|||+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34678899999999999965
No 419
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.64 E-value=1.2 Score=38.23 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=16.9
Q ss_pred ccccCCc--EEEEcCCCChhhHHH
Q 017573 29 PFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 29 ~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
.+++|.+ ++..|.||||||.++
T Consensus 83 ~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 83 EVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCCceEE
Confidence 3446765 578899999999875
No 420
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=76.46 E-value=2.5 Score=39.08 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=26.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
+-+++.+..|.|||.++...+......+. ++++|--
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~---rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGK---RVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCC---cEEEEEC
Confidence 45788899999999998777766655543 7777653
No 421
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=76.46 E-value=13 Score=33.31 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=35.2
Q ss_pred ccCCcEEEEcCCCChhhHHHHHHHHHhhhcc-----CCCccEEEEcC--CHHHHHHHHHHHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAP--TRELAQQIEKVMRA 86 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~liv~P--~~~l~~q~~~~~~~ 86 (369)
-+|+...|.++.|+|||..++-.+.+..... ..+..++|+.- +..-+.++.+.+.+
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 3589999999999999988777777776531 11113444332 33445555555554
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=76.46 E-value=1 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999775
No 423
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=76.24 E-value=3.8 Score=36.28 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=46.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHHccCCcEEEeccHHHHHHHHcCCCCCCCccEEE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 143 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~vi 143 (369)
+++|+||++.-++..++.+++. +.++..++++...........+..+|+|+|. .+ ..+++.. +++||
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERVL 245 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----ST-TCCTTCC-CSEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEEE
Confidence 8999999999999999888875 6788888886555444444556789999993 33 3345666 77776
No 424
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=76.01 E-value=1.7 Score=32.88 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
.-.+|.+|+|+|||..+
T Consensus 27 g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 36789999999999764
No 425
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=75.95 E-value=1.6 Score=33.70 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
..+.+.+++|||||.++
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999876
No 426
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.95 E-value=1.7 Score=37.44 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=17.6
Q ss_pred hccccCCc--EEEEcCCCChhhHHH
Q 017573 28 VPFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 28 ~~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+.+++|.+ ++..+.||||||.++
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 44556765 577899999999875
No 427
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=75.87 E-value=1.3 Score=38.13 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=21.6
Q ss_pred cHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 20 SAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 20 ~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
..-|.+.++. +++|.+ ++..|.||||||.++
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 3346665543 445665 688899999999875
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.78 E-value=1.8 Score=33.38 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhhHHHH
Q 017573 34 LDVIQQAQSGTGKTATFC 51 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~ 51 (369)
..+.+.|++|||||+++-
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999998763
No 429
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=75.78 E-value=1.3 Score=38.20 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=22.4
Q ss_pred CcHhhhhhhhc--------cccCCc--EEEEcCCCChhhHHHH
Q 017573 19 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATFC 51 (369)
Q Consensus 19 ~~~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~~ 51 (369)
+..-|.+.++. +++|.+ ++..|.||||||.++.
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 33446555543 445655 6788999999998864
No 430
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.68 E-value=1.6 Score=39.90 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999765
No 431
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=75.62 E-value=1.6 Score=34.81 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.7
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..+.-+++.|+.|+|||+.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 35677899999999999775
No 432
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.60 E-value=1.7 Score=40.30 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.9
Q ss_pred cccCCcEEEEcCCCChhhHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~ 50 (369)
+..+..+++.+|+|+|||..+
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 345789999999999999765
No 433
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=75.59 E-value=37 Score=30.44 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=61.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
+.++++.+..-+..+.+.+.+. +.++..++|+......... ..+..+|+|+|++.+.. +++...+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 5556666666665555555543 4478888888775544332 24577899999766643 456677889
Q ss_pred EEEechhHhhccCcHHHHHHHHhhCCccCcEEEEE
Q 017573 142 FVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 176 (369)
Q Consensus 142 viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~~s 176 (369)
||+..... ....+.+...+..+.-+.+..+++.+
T Consensus 420 vi~~~~~~-s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 420 VVLAHGVK-SKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEESSCCC-SCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEeCCCC-CHHHHHHHHhcccccCCCCceEEEEE
Confidence 98887772 22334556666655544432333333
No 434
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.43 E-value=1.3 Score=38.13 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=17.3
Q ss_pred hccccCCc--EEEEcCCCChhhHHH
Q 017573 28 VPFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 28 ~~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+.+++|.+ ++..|.||||||.++
T Consensus 73 ~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 73 QSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhhhcCCceEEEEECCCCCCCeEee
Confidence 34456765 577899999999875
No 435
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=75.40 E-value=14 Score=31.89 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=51.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCcc
Q 017573 65 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIK 140 (369)
Q Consensus 65 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~ 140 (369)
.++||.|+++.-+....+.+.+. +..+..++++.......... .+...|+|+|. ....+++...++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 38999999999999888888775 67788888887765544332 35678999993 233456666677
Q ss_pred EEEEe
Q 017573 141 MFVLD 145 (369)
Q Consensus 141 ~viiD 145 (369)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77753
No 436
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=75.33 E-value=1.9 Score=34.70 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+..+.+.||.|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999764
No 437
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.95 E-value=1.5 Score=38.35 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=17.5
Q ss_pred hccccCCc--EEEEcCCCChhhHHH
Q 017573 28 VPFCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 28 ~~~~~~~~--~li~~~tG~GKT~~~ 50 (369)
+.+++|.+ ++..|.||||||.++
T Consensus 132 ~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 132 QSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHCCCceEEEEecCCCCCCeeEe
Confidence 44456765 578899999999875
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=74.91 E-value=1.5 Score=34.83 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=16.4
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678899999999999964
No 439
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=74.87 E-value=3.5 Score=34.98 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=25.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
+-+++.+.-|.|||+++...+......+. +++++--
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~---~vllid~ 52 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRR---SVLLLST 52 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSS---CEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCC---cEEEEEC
Confidence 34678889999999988766665554433 7777664
No 440
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=74.80 E-value=1.6 Score=38.59 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.6
Q ss_pred Hhhhhhhhc--------cccCCc--EEEEcCCCChhhHHH
Q 017573 21 AIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 50 (369)
Q Consensus 21 ~~Q~~~~~~--------~~~~~~--~li~~~tG~GKT~~~ 50 (369)
.-|.+.++. +++|.+ ++..|.||+|||.++
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 456666544 346765 588899999999876
No 441
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.77 E-value=12 Score=32.42 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=52.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++.-+..+.+.+.+. +..+..++++.........+ .+..+|+|+|. ....+++...+++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~~ 337 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVSV 337 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCCE
Confidence 8999999999999988888775 67788888887765544332 45678999993 2344577777888
Q ss_pred EEE
Q 017573 142 FVL 144 (369)
Q Consensus 142 vii 144 (369)
||.
T Consensus 338 Vi~ 340 (412)
T 3fht_A 338 VIN 340 (412)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 442
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=74.75 E-value=1.5 Score=36.03 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
.+|+-+.+.+|.|+|||+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999965
No 443
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.69 E-value=1.6 Score=35.26 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.4
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678889999999999965
No 444
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=74.66 E-value=3.7 Score=34.52 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
-+.+.||+|||||+.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 445
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.61 E-value=11 Score=29.57 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=47.9
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecC------CcCCCCCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQQV 304 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~------~~~G~d~~~~ 304 (369)
...++++.+++++.+..+++.+++. +..+..++|+.+...+... +. ...+|+|+|+. ....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3468999999999998888888764 6678888887655443322 22 34789999961 1224567778
Q ss_pred cEEEEec
Q 017573 305 SLVINYD 311 (369)
Q Consensus 305 ~~vi~~~ 311 (369)
+.+|+-+
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8887654
No 446
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=74.61 E-value=2 Score=34.72 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.+..+.+.+|+|||||+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999765
No 447
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.58 E-value=1.4 Score=34.54 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
..+.+.+++|||||+++
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999865
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=74.49 E-value=1.5 Score=34.72 Aligned_cols=19 Identities=37% Similarity=0.330 Sum_probs=16.0
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577789999999999964
No 449
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=74.44 E-value=3.1 Score=37.32 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
+.-+.+.|+.|+|||+.+- .+...+... ++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~-~LAgll~~~--~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG-KLARQFEQQ--GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH-HHHHHHHHT--TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHH-HHHHHhhhc--CCeEEEe
Confidence 4567899999999997643 223233322 2267776
No 450
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=74.36 E-value=2.6 Score=37.69 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
+|+...|.++.|+|||..++-.+.+..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 589999999999999988766666654
No 451
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.33 E-value=1.6 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.4
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999965
No 452
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.29 E-value=15 Score=29.55 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=50.9
Q ss_pred cCCCeEEEeCCHhhHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----CC--cCCCCCC
Q 017573 234 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL--ARGIDVQ 302 (369)
Q Consensus 234 ~~~k~lv~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~--~~G~d~~ 302 (369)
.+.++++.+|++..+...++.+++. +..+..+.|+.+....... ...+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999988887777653 5677788887765554333 2333 78999995 11 2246777
Q ss_pred CCcEEEEec
Q 017573 303 QVSLVINYD 311 (369)
Q Consensus 303 ~~~~vi~~~ 311 (369)
.++.+|+-+
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 788887654
No 453
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=74.28 E-value=3.4 Score=34.37 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=46.9
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecCC------c-CCCCCCC
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL------A-RGIDVQQ 303 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~------~-~G~d~~~ 303 (369)
.++||.+|+++.+..+++.++.. +..+....++.+.... .....+|+|+|+.- . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 47999999999998887777653 3566666666543221 13456799999722 2 3467778
Q ss_pred CcEEEEecC
Q 017573 304 VSLVINYDL 312 (369)
Q Consensus 304 ~~~vi~~~~ 312 (369)
+.++|+-..
T Consensus 236 l~~lVlDEa 244 (300)
T 3fmo_B 236 IKVFVLDEA 244 (300)
T ss_dssp CSEEEETTH
T ss_pred ceEEEEeCH
Confidence 888886543
No 454
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=74.12 E-value=4.1 Score=31.92 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
+....+|.|||.++...+......+. +++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~---rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGY---RTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC---CEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEcc
Confidence 34445899999888766554444443 7877644
No 455
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.05 E-value=2.5 Score=44.05 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=34.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 80 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 80 (369)
|+-+.+.+|.|+|||..++..+.+....+. .++++.+--++....
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH
Confidence 356899999999999998877776665554 888988876666554
No 456
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=74.02 E-value=3.8 Score=31.62 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChhhHHH
Q 017573 33 GLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~ 50 (369)
+.-+.+.|+.|+|||..+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455889999999999765
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=73.94 E-value=1.3 Score=36.95 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.|+-+.+.+|+|+|||..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5678999999999999653
No 458
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=73.88 E-value=1.4 Score=38.08 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+-.++.||||+|||.+.
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55799999999999763
No 459
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.87 E-value=3.8 Score=33.10 Aligned_cols=34 Identities=15% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
.-+++.+..|+|||..+...+.... .+. +++++-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~---~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNY---KVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTS---CEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCC---eEEEEe
Confidence 3478899999999977654443332 322 666665
No 460
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.69 E-value=1.7 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999965
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=73.47 E-value=2.2 Score=36.83 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.7
Q ss_pred ccCCcEEEEcCCCChhhHHH
Q 017573 31 CKGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~~ 50 (369)
..++.+.+.||+|+|||..+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34678999999999999764
No 462
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=73.40 E-value=1.8 Score=35.20 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3577889999999999964
No 463
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.30 E-value=23 Score=31.12 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=51.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++.-+..+.+.+.+. +..+..++|+....+....+ .+...|+|+|. ....+++...+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 5999999999999888888764 67888899887765544332 35788999994 3344677777888
Q ss_pred EEE
Q 017573 142 FVL 144 (369)
Q Consensus 142 vii 144 (369)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 464
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.28 E-value=14 Score=31.96 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=52.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHHH----ccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++.-+..+.+.+.+. +..+..++++.......... .+...|+|+|. ....+++...+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCCE
Confidence 8999999999999888888775 67788889887755544332 35678999993 2344577777788
Q ss_pred EEEec
Q 017573 142 FVLDE 146 (369)
Q Consensus 142 viiDE 146 (369)
||.-+
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 77533
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=73.26 E-value=2.2 Score=36.70 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.9
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
-++|.||+|+|||...
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999764
No 466
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.23 E-value=1.8 Score=34.71 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999965
No 467
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=73.16 E-value=1.9 Score=38.81 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999765
No 468
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.09 E-value=2.1 Score=40.96 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q 017573 33 GLDVIQQAQSGTGKTATFCS 52 (369)
Q Consensus 33 ~~~~li~~~tG~GKT~~~~~ 52 (369)
..++++.||+|+|||.++-.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999987643
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=73.05 E-value=1.6 Score=36.31 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 470
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=72.94 E-value=26 Score=26.85 Aligned_cols=113 Identities=7% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCeEEEeCCHhhHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec----CCcCCCCCCCCcEEEEec
Q 017573 236 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD----LLARGIDVQQVSLVINYD 311 (369)
Q Consensus 236 ~k~lv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~----~~~~G~d~~~~~~vi~~~ 311 (369)
.++++.++.......+.+...+.+..+..+.+.++. -....+.. +...+|+|+-. .+..-+++| ..+
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP------VV~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP------SIS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC------EEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC------EEE
Confidence 477888888887776666666656677777776533 33444445 56678999864 444445555 455
Q ss_pred CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHhccccc
Q 017573 312 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 359 (369)
Q Consensus 312 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (369)
.+.|..++.+.+-++.+.+. +.-++-.++-......+.+.++.++.
T Consensus 76 I~~s~~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~ 121 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIK 121 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEE
T ss_pred EcCCHhHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceE
Confidence 57788899999998877654 22223333334445667777776554
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=72.91 E-value=3.4 Score=37.58 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=19.2
Q ss_pred cccCCcEEEEcCCCChhhHHHHHH
Q 017573 30 FCKGLDVIQQAQSGTGKTATFCSG 53 (369)
Q Consensus 30 ~~~~~~~li~~~tG~GKT~~~~~~ 53 (369)
+..|.-+.+.+|+|+|||+.+...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 445788999999999999776543
No 472
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=72.81 E-value=1.5 Score=35.22 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577889999999999965
No 473
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.57 E-value=19 Score=31.77 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCChhhHHHHHHHHHhhhccCCCccEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEEC--------CcchHHHHHH---
Q 017573 42 SGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG--------GTSVREDQRI--- 110 (369)
Q Consensus 42 tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~--- 110 (369)
..++|..... .++........+.++||.++++..+....+.+.+. ++.+..++| +....+....
T Consensus 340 ~~~~k~~~l~-~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDKLK-EIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHHHH-HHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 4566665433 33333221123348999999999998888888775 677888887 4433333222
Q ss_pred -HccCCcEEEeccHHHHHHHHcCCCCCCCccEEEEechh
Q 017573 111 -LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 148 (369)
Q Consensus 111 -~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~viiDE~H 148 (369)
..+...|+|+|. .+ ..+++...+++||+-+..
T Consensus 415 F~~~~~~vLv~T~-----~~-~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVATS-----VG-EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEECG-----GG-GGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEECC-----cc-ccCCCchhCCEEEEeCCC
Confidence 235678999992 22 334666667887765544
No 474
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=72.52 E-value=1.9 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4577889999999999964
No 475
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.51 E-value=1.9 Score=35.13 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.0
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 476
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=72.49 E-value=1.4 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
.+.+.+++|+|||+.+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 477
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.33 E-value=29 Score=32.57 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=54.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccCcEEEEEECCcchHHHHHH----HccCCcEEEeccHHHHHHHHcCCCCCCCccE
Q 017573 66 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 141 (369)
Q Consensus 66 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~iiv~t~~~l~~~~~~~~~~~~~~~~ 141 (369)
++||.|+++..++.+.+.+.+. ++.+..++++......... ..+..+|+|+|. .+ ..+++...+++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v~l 510 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEVSL 510 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCCCE
Confidence 8999999999999888888775 6778888887665544433 235688999983 22 44567777888
Q ss_pred EEEechhH
Q 017573 142 FVLDEADE 149 (369)
Q Consensus 142 viiDE~H~ 149 (369)
||+=+++.
T Consensus 511 VI~~d~d~ 518 (664)
T 1c4o_A 511 VAILDADK 518 (664)
T ss_dssp EEETTTTS
T ss_pred EEEeCCcc
Confidence 88877654
No 478
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.28 E-value=1.9 Score=34.94 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.1
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3577889999999999964
No 479
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=72.05 E-value=4.2 Score=34.79 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChhhHHHHHHHH
Q 017573 34 LDVIQQAQSGTGKTATFCSGIL 55 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~ 55 (369)
..+.+.+++|+|||..+...+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999977544433
No 480
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=72.02 E-value=3.6 Score=32.86 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=22.2
Q ss_pred EEEEcCCCChhhHHHHHHHHHhhhccCCCccEEEE
Q 017573 36 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 70 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv 70 (369)
+.+.+.-|.|||+++...+......+. ++++|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~---~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD---KIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS---CEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 455788999999988766665544432 67666
No 481
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.98 E-value=1.7 Score=35.87 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+.+.|++|||||+++-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999998764
No 482
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=71.92 E-value=3.9 Score=32.39 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=21.4
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEcC
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 72 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~P 72 (369)
+.....|.|||.++...+......+. +++++=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGR---KVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCC---eEEEEeC
Confidence 34567799999887666655444333 7777653
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=71.92 E-value=2.6 Score=32.73 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhhHHH
Q 017573 34 LDVIQQAQSGTGKTATF 50 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~ 50 (369)
.-.+|.+|+|+|||.+.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45799999999999764
No 484
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=71.90 E-value=4 Score=32.40 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=16.0
Q ss_pred cEEEEcC-CCChhhHHHHHHHHHhhhc
Q 017573 35 DVIQQAQ-SGTGKTATFCSGILQQLDY 60 (369)
Q Consensus 35 ~~li~~~-tG~GKT~~~~~~~~~~~~~ 60 (369)
.++|.+. ||+|||.+++..+.....+
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~ 32 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQ 32 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHC
Confidence 4555554 8999998865444433333
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=71.80 E-value=2 Score=35.00 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhhHH
Q 017573 32 KGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~ 49 (369)
.|+-+.+.+|.|+|||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 567789999999999965
No 486
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.78 E-value=2 Score=41.45 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.++.+++.+|+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999765
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=71.77 E-value=2 Score=35.16 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.1
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567889999999999964
No 488
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=71.73 E-value=2 Score=34.80 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577889999999999964
No 489
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=71.62 E-value=4.6 Score=32.65 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
+..+..|.|||.++...+......+. +++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGH---DVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCC---cEEEEE
Confidence 45678899999887766555444333 677764
No 490
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=71.59 E-value=1.9 Score=36.91 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.6
Q ss_pred CCc--EEEEcCCCChhhHHHH
Q 017573 33 GLD--VIQQAQSGTGKTATFC 51 (369)
Q Consensus 33 ~~~--~li~~~tG~GKT~~~~ 51 (369)
|.+ ++..|.||||||.++.
T Consensus 83 G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEEe
Confidence 655 5899999999998763
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.52 E-value=2.9 Score=40.68 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.0
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+++.||+|+|||..+-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999998763
No 492
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=71.51 E-value=2.1 Score=34.99 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.2
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999964
No 493
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=71.38 E-value=4.1 Score=33.02 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEcCCCChhhHHHHHHHHHhhhccCCCccEEEEc
Q 017573 37 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 71 (369)
Q Consensus 37 li~~~tG~GKT~~~~~~~~~~~~~~~~~~~~liv~ 71 (369)
+.....|.|||+++...+......+. +++++=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~---~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGK---KVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 44567789999888766555444433 677754
No 494
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.17 E-value=2.5 Score=34.08 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.6
Q ss_pred cEEEEcCCCChhhHHHH
Q 017573 35 DVIQQAQSGTGKTATFC 51 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~~ 51 (369)
.+.|.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 495
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=71.17 E-value=5.5 Score=30.01 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhh
Q 017573 34 LDVIQQAQSGTGKTATFCSGILQQL 58 (369)
Q Consensus 34 ~~~li~~~tG~GKT~~~~~~~~~~~ 58 (369)
.-+.+.++.|+|||... ..++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~-~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL-KKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred eEEEEEeCCCCCHHHHH-HHHHHhc
Confidence 35789999999999654 3333333
No 496
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=70.99 E-value=2.1 Score=35.21 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=16.1
Q ss_pred ccCCcEEEEcCCCChhhHH
Q 017573 31 CKGLDVIQQAQSGTGKTAT 49 (369)
Q Consensus 31 ~~~~~~li~~~tG~GKT~~ 49 (369)
..|+-+.+.+|.|+|||+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567889999999999965
No 497
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=70.63 E-value=4.5 Score=34.62 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=24.3
Q ss_pred EEEEcCCCChhhHHHHHHHHHhh--hccCCCccEEEEcC
Q 017573 36 VIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAP 72 (369)
Q Consensus 36 ~li~~~tG~GKT~~~~~~~~~~~--~~~~~~~~~liv~P 72 (369)
+++.+..|.|||.++...+.... ..+. ++++|-.
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G~---rVLLvD~ 56 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPNK---QFLLIST 56 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS---CEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCC---eEEEEEC
Confidence 56778899999998877666554 3333 7777764
No 498
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.45 E-value=1.6 Score=47.67 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChhhHHH
Q 017573 32 KGLDVIQQAQSGTGKTATF 50 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~ 50 (369)
.++.++++||||+|||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4789999999999999765
No 499
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=70.42 E-value=8.9 Score=29.98 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCChhhHHHHHHHHHhhh
Q 017573 32 KGLDVIQQAQSGTGKTATFCSGILQQLD 59 (369)
Q Consensus 32 ~~~~~li~~~tG~GKT~~~~~~~~~~~~ 59 (369)
.|.-+++.|+.|+|||..+- .+.+.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~-~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARN-VVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35668899999999997753 3334444
No 500
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.08 E-value=3.7 Score=34.50 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.3
Q ss_pred cEEEEcCCCChhhHHH
Q 017573 35 DVIQQAQSGTGKTATF 50 (369)
Q Consensus 35 ~~li~~~tG~GKT~~~ 50 (369)
-+++.|+.|||||+..
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3689999999999653
Done!