BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017575
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 200/332 (60%), Gaps = 7/332 (2%)
Query: 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVI 84
S RPV+PF+AIVGQE+MKL LLL +DP IGGV++ GDRGTGKST VR+L LLP I
Sbjct: 13 SGAKTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEI 72
Query: 85 KVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIE 144
+ V G P +S P I +V+ ++ +VDLPLG +EDRV G +DIE
Sbjct: 73 EAVEGCPVSS----PNVEMIPDWATVLS---TNVIRKPTPVVDLPLGVSEDRVVGALDIE 125
Query: 145 KALTEGVKAFEPGLLAKANRGILYXXXXXXXXXXXXXXXXXSAASGWNTVEREGISISHP 204
+A+++G KAFEPGLLA+ANRG LY A SG N VER+G+SI HP
Sbjct: 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHP 185
Query: 205 ARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264
ARF+L+GSGNPEEG+LRPQLLDRFG+ +V + RD E RV+++ R +D +PK F + +
Sbjct: 186 ARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEW 245
Query: 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRXXXXXXXXX 324
+ + ++ QI AR LP V+ + + +C L DGLRG++ R
Sbjct: 246 RPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALE 305
Query: 325 GRDKVSAEDIATVMPNCLRHRLRKDPLESIDS 356
G V + + V L HRLR+DPL+ S
Sbjct: 306 GATAVGRDHLKRVATMALSHRLRRDPLDEAGS 337
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 49 LLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VVVGDP 91
+L + K+G +++ G G+GKSTT+ S++D + K + + DP
Sbjct: 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 49 LLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VVVGDP 91
+L + K G +++ G G+GKSTT+ S +D + K + + DP
Sbjct: 128 VLELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDP 174
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 49 LLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VVVGDP 91
+L + K G +++ G G+GKSTT+ S +D + K + + DP
Sbjct: 117 VLELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDP 163
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 60 VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGE 114
+++MG G GK T +V+ + + GD + + ++ +G+E + + KGE
Sbjct: 3 IVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGE 57
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of
Aquifex Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of
Aquifex Aeolicus Pilt
Length = 261
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 49 LLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VVVGDP 91
+L + K G +++ G G+GKSTT+ S +D + K + + DP
Sbjct: 17 VLELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDP 63
>pdb|4G2C|A Chain A, Dyp2 From Amycolatopsis Sp. Atcc 39116
pdb|4G2C|B Chain B, Dyp2 From Amycolatopsis Sp. Atcc 39116
Length = 493
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 57 IGGVMIMGDRGTGKSTTVRSLVDLL-PVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEE 115
I V+++GD G T+R V+ L P VVG E G+ + + G E
Sbjct: 164 IDAVLLLGDATAGPVRTLRRQVEALRPASVTVVG----------EESGLGLANANGDGIE 213
Query: 116 LSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEP 156
F ++ PL TED +D E+ T+GV ++P
Sbjct: 214 ---HFGYVDGRSQPLFLTED-----VDAERDTTDGVNDWDP 246
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 60 VMIMGDRGTGKSTTVRSLVDLLPVIKVVVG 89
V++ G GTGKSTT +++ DL + + VG
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVG 236
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 60 VMIMGDRGTGKSTTVRSLVDLLP 82
V+I+G G+GK+T +R++ LLP
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLP 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,402,666
Number of Sequences: 62578
Number of extensions: 356915
Number of successful extensions: 1118
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 25
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)