Query 017575
Match_columns 369
No_of_seqs 158 out of 2765
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:48:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00081 chlI Mg-protoporyphyr 100.0 1.6E-46 3.4E-51 347.7 29.5 345 25-369 6-350 (350)
2 TIGR02030 BchI-ChlI magnesium 100.0 4.8E-44 1E-48 331.6 29.6 336 34-369 2-337 (337)
3 COG1239 ChlI Mg-chelatase subu 100.0 7.7E-42 1.7E-46 314.6 28.5 320 32-351 13-332 (423)
4 PRK13407 bchI magnesium chelat 100.0 2.6E-41 5.7E-46 312.6 26.8 329 31-368 3-333 (334)
5 TIGR02442 Cob-chelat-sub cobal 100.0 2.7E-36 5.8E-41 303.9 31.0 313 34-351 2-314 (633)
6 TIGR02031 BchD-ChlD magnesium 100.0 6.3E-33 1.4E-37 276.5 26.5 265 43-351 2-268 (589)
7 PRK13406 bchD magnesium chelat 100.0 1.6E-32 3.5E-37 271.0 23.0 249 41-350 8-259 (584)
8 PRK13531 regulatory ATPase Rav 100.0 6.1E-30 1.3E-34 243.3 21.5 260 37-347 21-289 (498)
9 COG0606 Predicted ATPase with 100.0 6E-30 1.3E-34 239.1 17.5 276 33-341 176-485 (490)
10 PRK09862 putative ATP-dependen 100.0 5.7E-29 1.2E-33 240.9 21.1 277 33-341 188-492 (506)
11 TIGR00368 Mg chelatase-related 100.0 7.5E-28 1.6E-32 234.4 20.3 276 33-340 189-498 (499)
12 PF01078 Mg_chelatase: Magnesi 100.0 3.7E-28 8E-33 207.3 11.9 182 34-239 1-204 (206)
13 COG0714 MoxR-like ATPases [Gen 99.9 4.3E-26 9.2E-31 214.0 21.8 286 37-367 25-325 (329)
14 smart00350 MCM minichromosome 99.9 1.1E-25 2.3E-30 222.1 23.6 267 35-344 202-507 (509)
15 COG2255 RuvB Holliday junction 99.9 1.4E-22 3E-27 177.3 19.6 221 31-342 21-252 (332)
16 PTZ00111 DNA replication licen 99.9 1.9E-22 4.1E-27 203.9 22.3 267 35-343 449-806 (915)
17 PF05496 RuvB_N: Holliday junc 99.9 1.1E-23 2.3E-28 181.0 10.0 202 31-323 19-231 (233)
18 TIGR02640 gas_vesic_GvpN gas v 99.9 5.6E-22 1.2E-26 180.0 20.4 241 44-346 10-262 (262)
19 PF00493 MCM: MCM2/3/5 family 99.9 9.3E-23 2E-27 190.7 12.0 265 35-342 23-327 (331)
20 KOG0480 DNA replication licens 99.9 1.3E-21 2.8E-26 187.0 18.3 269 34-346 343-648 (764)
21 TIGR01650 PD_CobS cobaltochela 99.9 1.8E-21 3.9E-26 177.9 17.6 240 41-369 50-316 (327)
22 KOG0482 DNA replication licens 99.9 6.9E-22 1.5E-26 184.2 14.8 273 35-351 341-648 (721)
23 PF07726 AAA_3: ATPase family 99.9 6.1E-23 1.3E-27 161.0 5.3 126 59-229 1-130 (131)
24 COG1241 MCM2 Predicted ATPase 99.9 3.9E-21 8.6E-26 190.2 17.7 268 35-345 285-596 (682)
25 TIGR02902 spore_lonB ATP-depen 99.9 1.3E-20 2.7E-25 186.6 20.8 254 25-340 55-331 (531)
26 KOG0478 DNA replication licens 99.8 7.5E-19 1.6E-23 169.5 19.2 263 35-341 428-724 (804)
27 COG3829 RocR Transcriptional r 99.8 1.7E-19 3.7E-24 171.4 13.5 238 31-335 240-491 (560)
28 COG1222 RPT1 ATP-dependent 26S 99.8 8.7E-18 1.9E-22 151.8 17.1 222 30-345 145-396 (406)
29 COG3604 FhlA Transcriptional r 99.8 8.1E-19 1.8E-23 164.7 9.7 228 32-321 219-456 (550)
30 TIGR00764 lon_rel lon-related 99.8 2.1E-17 4.6E-22 165.6 19.7 166 152-341 206-391 (608)
31 COG1223 Predicted ATPase (AAA+ 99.8 8.4E-18 1.8E-22 145.5 14.3 223 28-345 113-359 (368)
32 PRK14956 DNA polymerase III su 99.8 1.7E-17 3.7E-22 159.1 17.5 237 26-341 9-246 (484)
33 PRK00080 ruvB Holliday junctio 99.8 3E-17 6.4E-22 154.2 18.8 220 32-341 21-250 (328)
34 TIGR00635 ruvB Holliday juncti 99.8 5.2E-17 1.1E-21 151.2 18.9 217 34-340 2-228 (305)
35 PRK07003 DNA polymerase III su 99.8 1.6E-17 3.4E-22 165.0 15.6 236 25-341 6-244 (830)
36 COG2256 MGS1 ATPase related to 99.8 7.8E-18 1.7E-22 154.5 12.4 217 23-340 13-237 (436)
37 PRK14958 DNA polymerase III su 99.7 2E-17 4.3E-22 162.4 14.2 237 26-343 7-246 (509)
38 PRK14960 DNA polymerase III su 99.7 5.7E-17 1.2E-21 159.6 16.5 235 25-340 5-242 (702)
39 COG2204 AtoC Response regulato 99.7 4.2E-17 9E-22 155.4 14.4 241 33-336 138-386 (464)
40 COG2812 DnaX DNA polymerase II 99.7 2.2E-17 4.7E-22 159.4 11.8 240 25-343 6-246 (515)
41 PRK12323 DNA polymerase III su 99.7 6.3E-17 1.4E-21 158.9 13.4 234 26-340 7-248 (700)
42 KOG0477 DNA replication licens 99.7 3.7E-17 7.9E-22 156.2 11.4 266 36-344 449-760 (854)
43 PRK14949 DNA polymerase III su 99.7 1.2E-16 2.7E-21 161.6 15.0 231 25-336 6-239 (944)
44 TIGR02903 spore_lon_C ATP-depe 99.7 5.4E-16 1.2E-20 156.0 18.8 253 32-340 150-429 (615)
45 PRK07994 DNA polymerase III su 99.7 1.9E-16 4.1E-21 157.8 15.1 233 26-339 7-242 (647)
46 PRK14961 DNA polymerase III su 99.7 4.4E-16 9.4E-21 148.0 16.2 234 25-339 6-242 (363)
47 PF07728 AAA_5: AAA domain (dy 99.7 4.9E-17 1.1E-21 133.5 8.2 128 59-228 1-139 (139)
48 PRK08691 DNA polymerase III su 99.7 3E-16 6.5E-21 155.8 14.9 236 26-342 7-245 (709)
49 KOG0738 AAA+-type ATPase [Post 99.7 5.5E-16 1.2E-20 141.2 14.5 173 17-248 193-392 (491)
50 PRK05342 clpX ATP-dependent pr 99.7 4.3E-16 9.4E-21 148.9 14.6 221 37-317 72-374 (412)
51 COG0466 Lon ATP-dependent Lon 99.7 3.7E-16 8E-21 152.6 14.1 254 8-340 304-583 (782)
52 PRK14964 DNA polymerase III su 99.7 2.1E-16 4.5E-21 153.2 12.1 237 27-344 5-244 (491)
53 KOG0481 DNA replication licens 99.7 1.1E-15 2.5E-20 143.2 15.9 267 36-346 331-644 (729)
54 COG1221 PspF Transcriptional r 99.7 2.5E-16 5.4E-21 147.6 11.4 229 34-327 76-315 (403)
55 PRK14962 DNA polymerase III su 99.7 8.3E-16 1.8E-20 149.6 15.1 235 27-343 6-244 (472)
56 PRK13765 ATP-dependent proteas 99.7 3.3E-15 7.2E-20 149.3 19.1 284 28-339 23-398 (637)
57 PRK06645 DNA polymerase III su 99.7 1.2E-15 2.6E-20 149.0 15.5 243 31-346 16-261 (507)
58 PRK14969 DNA polymerase III su 99.7 2E-15 4.4E-20 149.2 16.6 234 26-340 7-243 (527)
59 PRK03992 proteasome-activating 99.7 1.7E-15 3.7E-20 145.0 15.6 223 30-346 125-377 (389)
60 PRK14951 DNA polymerase III su 99.7 1.3E-15 2.8E-20 151.5 15.0 240 26-341 7-249 (618)
61 KOG0479 DNA replication licens 99.7 4.8E-15 1E-19 140.9 17.9 263 36-341 301-642 (818)
62 PRK14957 DNA polymerase III su 99.7 1.8E-15 3.8E-20 148.7 15.1 234 26-340 7-243 (546)
63 PLN03025 replication factor C 99.7 6.7E-15 1.5E-19 137.7 18.2 215 28-338 6-220 (319)
64 TIGR00382 clpX endopeptidase C 99.6 3.9E-15 8.5E-20 141.6 16.3 223 37-321 78-384 (413)
65 KOG0734 AAA+-type ATPase conta 99.6 7.7E-16 1.7E-20 145.2 11.0 215 34-342 302-542 (752)
66 KOG0989 Replication factor C, 99.6 6.5E-15 1.4E-19 130.7 15.7 208 27-319 28-236 (346)
67 PTZ00454 26S protease regulato 99.6 4.7E-15 1E-19 141.5 15.9 224 29-343 138-388 (398)
68 PRK05563 DNA polymerase III su 99.6 4.3E-15 9.2E-20 148.0 16.1 235 25-340 6-243 (559)
69 PHA02244 ATPase-like protein 99.6 4.5E-14 9.7E-19 130.8 21.5 130 59-238 121-262 (383)
70 PRK08451 DNA polymerase III su 99.6 4.7E-15 1E-19 145.1 15.6 233 26-339 5-240 (535)
71 PRK14952 DNA polymerase III su 99.6 5.7E-15 1.2E-19 146.5 16.4 235 27-340 5-243 (584)
72 KOG0730 AAA+-type ATPase [Post 99.6 4.7E-15 1E-19 143.6 15.3 219 31-343 429-676 (693)
73 COG1224 TIP49 DNA helicase TIP 99.6 8E-15 1.7E-19 132.4 15.4 134 163-344 291-435 (450)
74 TIGR01242 26Sp45 26S proteasom 99.6 3.8E-15 8.1E-20 141.9 14.1 218 30-341 116-363 (364)
75 TIGR02974 phageshock_pspF psp 99.6 4.6E-15 1E-19 138.7 14.3 200 59-321 24-233 (329)
76 KOG2004 Mitochondrial ATP-depe 99.6 4.9E-15 1.1E-19 144.1 14.6 222 7-312 391-636 (906)
77 TIGR02881 spore_V_K stage V sp 99.6 4.8E-15 1E-19 134.7 13.7 134 158-334 100-253 (261)
78 TIGR02329 propionate_PrpR prop 99.6 5.4E-15 1.2E-19 145.6 14.8 242 33-338 209-467 (526)
79 KOG2028 ATPase related to the 99.6 2.3E-15 4.9E-20 136.2 10.2 219 34-340 136-367 (554)
80 PRK14965 DNA polymerase III su 99.6 7.6E-15 1.6E-19 146.8 14.8 233 26-339 7-242 (576)
81 PTZ00361 26 proteosome regulat 99.6 5.4E-15 1.2E-19 142.0 13.2 232 29-351 176-434 (438)
82 PRK07764 DNA polymerase III su 99.6 1.1E-14 2.4E-19 149.7 16.0 233 27-339 7-244 (824)
83 PRK15424 propionate catabolism 99.6 9.5E-15 2.1E-19 143.7 14.6 242 33-335 216-479 (538)
84 TIGR01241 FtsH_fam ATP-depende 99.6 2.7E-14 5.8E-19 141.3 17.0 221 29-343 48-297 (495)
85 KOG0991 Replication factor C, 99.6 4.7E-15 1E-19 126.6 9.9 244 27-365 19-280 (333)
86 TIGR02639 ClpA ATP-dependent C 99.6 2.3E-14 5E-19 147.8 15.9 231 34-341 180-429 (731)
87 TIGR01817 nifA Nif-specific re 99.6 2.5E-14 5.3E-19 143.0 15.6 236 32-335 192-439 (534)
88 PRK10787 DNA-binding ATP-depen 99.6 5.5E-14 1.2E-18 144.6 18.3 253 8-340 303-581 (784)
89 PRK11034 clpA ATP-dependent Cl 99.6 3.5E-14 7.7E-19 145.0 16.5 214 37-316 459-710 (758)
90 CHL00176 ftsH cell division pr 99.6 6.4E-14 1.4E-18 140.7 18.0 223 31-343 178-425 (638)
91 PRK14959 DNA polymerase III su 99.6 3.1E-14 6.7E-19 140.9 15.4 232 27-339 8-242 (624)
92 PRK05022 anaerobic nitric oxid 99.6 3.4E-14 7.3E-19 140.9 15.7 241 34-335 185-437 (509)
93 COG0542 clpA ATP-binding subun 99.6 8.3E-14 1.8E-18 139.8 18.0 218 36-315 491-748 (786)
94 PRK05896 DNA polymerase III su 99.6 2.3E-14 4.9E-19 141.2 13.7 234 25-339 6-242 (605)
95 PRK13342 recombination factor 99.6 3E-14 6.6E-19 137.8 14.3 205 33-340 9-218 (413)
96 smart00763 AAA_PrkA PrkA AAA d 99.6 3.9E-14 8.4E-19 131.3 14.0 239 35-304 49-354 (361)
97 CHL00195 ycf46 Ycf46; Provisio 99.6 3.7E-14 8.1E-19 138.2 14.7 220 31-344 223-466 (489)
98 PRK09111 DNA polymerase III su 99.6 2.4E-14 5.3E-19 142.7 13.6 244 27-345 16-261 (598)
99 PRK11608 pspF phage shock prot 99.6 4.6E-14 1E-18 132.1 14.7 222 35-319 5-238 (326)
100 PRK14963 DNA polymerase III su 99.6 8.5E-14 1.9E-18 136.6 17.0 235 27-342 6-241 (504)
101 TIGR00763 lon ATP-dependent pr 99.6 8.3E-14 1.8E-18 144.5 17.3 238 37-340 321-585 (775)
102 PRK07133 DNA polymerase III su 99.6 1E-13 2.2E-18 139.2 17.0 228 27-339 10-241 (725)
103 PRK06647 DNA polymerase III su 99.6 5.3E-14 1.2E-18 139.7 14.7 233 26-339 7-242 (563)
104 KOG0731 AAA+-type ATPase conta 99.6 1.8E-13 3.8E-18 136.5 17.9 221 31-344 306-556 (774)
105 PF00158 Sigma54_activat: Sigm 99.6 1.6E-14 3.5E-19 121.8 9.0 135 58-230 23-164 (168)
106 PRK14953 DNA polymerase III su 99.6 1.8E-13 3.8E-18 134.0 17.5 233 27-340 8-243 (486)
107 PRK11388 DNA-binding transcrip 99.5 1.1E-13 2.3E-18 141.4 16.5 237 32-338 321-568 (638)
108 CHL00181 cbbX CbbX; Provisiona 99.5 7.6E-14 1.6E-18 128.0 13.3 119 157-318 116-251 (287)
109 KOG1942 DNA helicase, TBP-inte 99.5 1.5E-13 3.3E-18 121.1 13.7 136 163-346 296-443 (456)
110 PRK13341 recombination factor 99.5 2.6E-13 5.6E-18 138.1 17.4 223 25-340 18-246 (725)
111 CHL00206 ycf2 Ycf2; Provisiona 99.5 1.4E-13 3.1E-18 146.8 15.3 163 163-366 1732-1905(2281)
112 PRK14955 DNA polymerase III su 99.5 4E-13 8.7E-18 129.2 15.9 244 26-338 7-254 (397)
113 PRK10820 DNA-binding transcrip 99.5 3.2E-13 6.9E-18 134.1 15.4 240 31-335 199-448 (520)
114 PRK15429 formate hydrogenlyase 99.5 3.9E-13 8.5E-18 138.2 15.9 224 33-320 373-608 (686)
115 TIGR03345 VI_ClpV1 type VI sec 99.5 7.7E-13 1.7E-17 137.7 18.0 228 34-337 185-427 (852)
116 TIGR02880 cbbX_cfxQ probable R 99.5 3.9E-13 8.5E-18 123.3 14.1 121 157-320 115-252 (284)
117 TIGR02639 ClpA ATP-dependent C 99.5 2.7E-13 5.8E-18 139.9 14.3 216 37-316 455-706 (731)
118 PRK00440 rfc replication facto 99.5 1.4E-12 3.1E-17 122.1 17.8 215 28-339 10-224 (319)
119 PRK05201 hslU ATP-dependent pr 99.5 8.3E-13 1.8E-17 124.3 15.7 156 163-340 249-431 (443)
120 PRK14950 DNA polymerase III su 99.5 8.5E-13 1.8E-17 132.7 16.9 233 27-340 8-244 (585)
121 PRK12402 replication factor C 99.5 2.1E-12 4.5E-17 122.0 18.4 236 33-339 12-247 (337)
122 TIGR00390 hslU ATP-dependent p 99.5 2.2E-12 4.7E-17 121.4 18.1 159 162-341 246-430 (441)
123 PRK11034 clpA ATP-dependent Cl 99.5 7.3E-13 1.6E-17 135.4 16.0 232 35-343 185-435 (758)
124 KOG0652 26S proteasome regulat 99.5 1.1E-12 2.3E-17 114.1 14.1 223 29-345 164-416 (424)
125 PRK06305 DNA polymerase III su 99.5 1.3E-12 2.9E-17 127.0 16.5 233 27-340 9-245 (451)
126 KOG0727 26S proteasome regulat 99.5 2.1E-12 4.5E-17 111.8 15.4 138 163-344 248-399 (408)
127 PRK11331 5-methylcytosine-spec 99.5 1.3E-12 2.8E-17 124.3 15.3 169 35-243 174-364 (459)
128 PRK14954 DNA polymerase III su 99.5 1.7E-12 3.7E-17 129.8 16.9 243 27-339 8-255 (620)
129 KOG0742 AAA+-type ATPase [Post 99.5 3.3E-12 7.1E-17 117.5 17.1 155 164-341 444-612 (630)
130 KOG0733 Nuclear AAA ATPase (VC 99.5 7.7E-13 1.7E-17 127.0 13.5 155 31-248 506-689 (802)
131 KOG0728 26S proteasome regulat 99.5 2.6E-12 5.7E-17 111.1 15.5 141 163-346 240-393 (404)
132 PHA02544 44 clamp loader, smal 99.5 4.2E-12 9.1E-17 118.8 18.1 197 27-315 13-211 (316)
133 TIGR02928 orc1/cdc6 family rep 99.5 1.3E-12 2.8E-17 124.8 14.9 144 163-342 129-275 (365)
134 TIGR01243 CDC48 AAA family ATP 99.5 1.2E-12 2.7E-17 135.4 15.7 158 31-248 448-632 (733)
135 PRK14970 DNA polymerase III su 99.4 3.1E-12 6.7E-17 122.2 16.8 219 27-339 9-231 (367)
136 COG0465 HflB ATP-dependent Zn 99.4 4.7E-12 1E-16 124.1 18.1 240 33-366 147-421 (596)
137 COG1219 ClpX ATP-dependent pro 99.4 1.3E-12 2.8E-17 116.6 12.9 222 37-319 62-365 (408)
138 TIGR03689 pup_AAA proteasome A 99.4 2.3E-12 4.9E-17 125.7 15.7 174 30-250 176-377 (512)
139 TIGR02397 dnaX_nterm DNA polym 99.4 1.3E-12 2.8E-17 124.3 13.8 228 32-339 10-240 (355)
140 PTZ00112 origin recognition co 99.4 3.4E-12 7.3E-17 128.3 17.0 263 15-346 738-1011(1164)
141 PF06068 TIP49: TIP49 C-termin 99.4 5.6E-13 1.2E-17 122.4 10.3 108 163-318 278-396 (398)
142 COG5271 MDN1 AAA ATPase contai 99.4 5.8E-12 1.2E-16 131.1 18.1 224 60-363 891-1128(4600)
143 TIGR02915 PEP_resp_reg putativ 99.4 2.2E-12 4.8E-17 126.5 14.9 236 34-335 137-383 (445)
144 PRK14948 DNA polymerase III su 99.4 5.4E-12 1.2E-16 126.8 17.4 230 28-337 9-241 (620)
145 PRK10923 glnG nitrogen regulat 99.4 2.1E-12 4.6E-17 127.4 14.4 236 34-338 136-385 (469)
146 PRK10865 protein disaggregatio 99.4 3.4E-12 7.4E-17 133.2 16.4 224 35-316 567-823 (857)
147 KOG0733 Nuclear AAA ATPase (VC 99.4 1.8E-12 4E-17 124.5 13.0 78 163-249 282-372 (802)
148 COG1126 GlnQ ABC-type polar am 99.4 2.6E-14 5.6E-19 121.3 0.4 150 34-189 7-181 (240)
149 KOG0736 Peroxisome assembly fa 99.4 5E-12 1.1E-16 124.4 16.0 163 30-249 666-855 (953)
150 COG1474 CDC6 Cdc6-related prot 99.4 3.8E-12 8.3E-17 120.1 14.0 239 36-340 17-264 (366)
151 TIGR03345 VI_ClpV1 type VI sec 99.4 5.3E-12 1.1E-16 131.5 16.3 223 36-316 566-825 (852)
152 KOG0737 AAA+-type ATPase [Post 99.4 1.2E-12 2.5E-17 119.5 9.9 155 34-249 90-272 (386)
153 PRK14971 DNA polymerase III su 99.4 8.6E-12 1.9E-16 125.4 17.2 231 27-338 9-243 (614)
154 TIGR03346 chaperone_ClpB ATP-d 99.4 4E-12 8.6E-17 133.2 15.1 219 36-316 565-820 (852)
155 PRK11361 acetoacetate metaboli 99.4 8.3E-12 1.8E-16 122.9 16.6 238 35-338 142-390 (457)
156 KOG2680 DNA helicase TIP49, TB 99.4 1.3E-11 2.9E-16 109.3 15.9 147 163-347 288-435 (454)
157 CHL00095 clpC Clp protease ATP 99.4 4.2E-12 9.1E-17 132.6 15.1 217 36-314 509-774 (821)
158 PRK06893 DNA replication initi 99.4 7.9E-12 1.7E-16 111.3 14.6 131 163-339 91-228 (229)
159 KOG0739 AAA+-type ATPase [Post 99.4 1.3E-12 2.8E-17 115.6 9.2 155 30-246 127-307 (439)
160 PRK08084 DNA replication initi 99.4 2.2E-11 4.8E-16 108.8 16.9 129 165-339 99-234 (235)
161 TIGR03420 DnaA_homol_Hda DnaA 99.4 8.2E-12 1.8E-16 111.1 14.0 206 32-338 11-225 (226)
162 PRK04195 replication factor C 99.4 1E-11 2.2E-16 122.6 15.2 204 31-337 9-221 (482)
163 PRK07940 DNA polymerase III su 99.4 5.6E-12 1.2E-16 120.1 12.9 171 34-248 3-186 (394)
164 TIGR03015 pepcterm_ATPase puta 99.4 4.4E-11 9.5E-16 109.3 18.3 140 162-341 122-266 (269)
165 PRK00411 cdc6 cell division co 99.4 2.2E-11 4.7E-16 117.6 17.1 138 164-342 139-283 (394)
166 COG3283 TyrR Transcriptional r 99.4 2E-11 4.2E-16 110.8 15.1 233 31-335 199-443 (511)
167 PRK08727 hypothetical protein; 99.4 2E-11 4.4E-16 108.9 15.3 130 163-339 93-229 (233)
168 PRK08903 DnaA regulatory inact 99.4 2.7E-11 5.9E-16 107.9 15.9 131 163-339 90-224 (227)
169 CHL00095 clpC Clp protease ATP 99.4 1.4E-11 3.1E-16 128.6 16.2 214 34-324 177-404 (821)
170 PRK10733 hflB ATP-dependent me 99.3 8.9E-12 1.9E-16 126.5 13.1 134 163-343 244-394 (644)
171 PRK09112 DNA polymerase III su 99.3 5.2E-11 1.1E-15 112.1 17.0 192 30-248 17-210 (351)
172 COG0464 SpoVK ATPases of the A 99.3 4.3E-11 9.3E-16 118.8 17.0 135 162-340 334-482 (494)
173 TIGR03346 chaperone_ClpB ATP-d 99.3 1.3E-11 2.7E-16 129.4 12.9 214 34-324 171-399 (852)
174 PRK15115 response regulator Gl 99.3 5E-11 1.1E-15 116.9 15.7 215 60-338 160-381 (444)
175 COG1116 TauB ABC-type nitrate/ 99.3 2.2E-12 4.8E-17 112.6 5.0 146 35-190 9-180 (248)
176 PRK06620 hypothetical protein; 99.3 2.6E-10 5.7E-15 100.2 18.2 125 164-338 86-213 (214)
177 COG1120 FepC ABC-type cobalami 99.3 9E-13 2E-17 117.0 2.4 50 33-85 6-56 (258)
178 KOG0745 Putative ATP-dependent 99.3 6E-11 1.3E-15 110.0 13.8 208 57-324 226-511 (564)
179 PRK00149 dnaA chromosomal repl 99.3 1.2E-10 2.6E-15 114.1 16.5 150 163-364 211-367 (450)
180 KOG0744 AAA+-type ATPase [Post 99.3 2.1E-11 4.6E-16 109.1 9.6 146 166-344 253-417 (423)
181 KOG0726 26S proteasome regulat 99.3 6.1E-11 1.3E-15 104.8 12.2 144 163-350 278-435 (440)
182 PRK10865 protein disaggregatio 99.3 5.6E-11 1.2E-15 124.2 14.0 211 34-304 176-403 (857)
183 TIGR01818 ntrC nitrogen regula 99.3 7.2E-11 1.6E-15 116.4 14.0 239 36-338 134-381 (463)
184 cd00009 AAA The AAA+ (ATPases 99.2 6.7E-11 1.5E-15 96.9 11.0 148 40-235 2-150 (151)
185 PRK09087 hypothetical protein; 99.2 4E-10 8.6E-15 99.9 16.2 130 165-341 89-222 (226)
186 PRK10365 transcriptional regul 99.2 2.2E-10 4.7E-15 112.2 15.9 214 59-338 164-386 (441)
187 TIGR00362 DnaA chromosomal rep 99.2 4.5E-10 9.8E-15 108.7 17.2 132 164-342 200-338 (405)
188 COG1125 OpuBA ABC-type proline 99.2 7.7E-12 1.7E-16 108.8 4.3 151 34-187 6-178 (309)
189 PRK07471 DNA polymerase III su 99.2 2.2E-10 4.7E-15 108.4 14.1 195 30-249 13-211 (365)
190 PRK14088 dnaA chromosomal repl 99.2 5.7E-10 1.2E-14 108.5 17.4 133 163-342 194-333 (440)
191 COG2884 FtsE Predicted ATPase 99.2 2.2E-11 4.8E-16 101.4 5.7 145 42-189 15-182 (223)
192 PRK14087 dnaA chromosomal repl 99.2 9.7E-10 2.1E-14 107.1 17.9 135 163-341 206-348 (450)
193 TIGR01243 CDC48 AAA family ATP 99.2 1.7E-10 3.8E-15 119.5 13.4 160 30-249 172-357 (733)
194 PF00004 AAA: ATPase family as 99.2 5.5E-11 1.2E-15 96.2 7.8 61 164-235 59-131 (132)
195 PF07724 AAA_2: AAA domain (Cd 99.2 2.7E-11 5.9E-16 102.5 6.0 58 157-216 62-130 (171)
196 PLN00020 ribulose bisphosphate 99.2 3.5E-11 7.6E-16 111.0 7.2 82 162-249 211-309 (413)
197 PRK12422 chromosomal replicati 99.2 5.5E-10 1.2E-14 108.5 15.8 134 163-343 202-345 (445)
198 COG3284 AcoR Transcriptional a 99.2 4.9E-11 1.1E-15 116.1 8.2 198 58-321 337-540 (606)
199 COG1220 HslU ATP-dependent pro 99.2 1E-10 2.3E-15 105.4 9.6 134 163-316 250-402 (444)
200 COG4555 NatA ABC-type Na+ tran 99.2 3.2E-11 6.9E-16 101.4 5.9 180 34-230 6-205 (245)
201 PRK14086 dnaA chromosomal repl 99.2 1.5E-09 3.3E-14 107.4 18.7 134 163-343 377-517 (617)
202 COG1131 CcmA ABC-type multidru 99.2 1.7E-11 3.7E-16 112.9 3.4 154 33-189 8-181 (293)
203 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 2E-11 4.4E-16 107.9 3.7 50 33-85 8-58 (254)
204 COG3839 MalK ABC-type sugar tr 99.1 1.6E-11 3.4E-16 113.3 2.8 149 34-189 8-178 (338)
205 COG1124 DppF ABC-type dipeptid 99.1 4.7E-11 1E-15 103.5 5.3 50 33-85 7-61 (252)
206 COG1117 PstB ABC-type phosphat 99.1 7.8E-11 1.7E-15 100.0 6.4 152 32-189 10-194 (253)
207 COG5271 MDN1 AAA ATPase contai 99.1 1.6E-09 3.4E-14 113.7 16.4 145 56-241 1541-1694(4600)
208 COG3842 PotA ABC-type spermidi 99.1 1.3E-11 2.9E-16 114.4 0.2 147 34-188 10-180 (352)
209 COG0410 LivF ABC-type branched 99.1 2.8E-11 6.1E-16 104.2 1.8 152 33-189 7-181 (237)
210 PRK05642 DNA replication initi 99.1 3.4E-09 7.4E-14 94.6 14.3 130 164-339 98-233 (234)
211 COG1136 SalX ABC-type antimicr 99.1 1.9E-10 4E-15 100.4 5.7 144 43-189 19-187 (226)
212 TIGR01188 drrA daunorubicin re 99.1 6.9E-11 1.5E-15 109.8 3.2 144 40-189 4-169 (302)
213 COG3638 ABC-type phosphate/pho 99.1 6.9E-11 1.5E-15 101.9 2.9 153 34-189 8-192 (258)
214 PRK13536 nodulation factor exp 99.1 4.3E-11 9.3E-16 112.5 1.3 49 34-85 46-95 (340)
215 PRK13537 nodulation ABC transp 99.0 5.7E-11 1.2E-15 110.4 1.8 49 34-85 12-61 (306)
216 COG1127 Ttg2A ABC-type transpo 99.0 9.6E-11 2.1E-15 101.3 2.9 151 34-188 13-189 (263)
217 KOG0740 AAA+-type ATPase [Post 99.0 4.2E-09 9.1E-14 99.6 14.0 154 33-248 150-330 (428)
218 COG4586 ABC-type uncharacteriz 99.0 3.8E-10 8.2E-15 99.2 6.2 171 44-230 39-229 (325)
219 cd03266 ABC_NatA_sodium_export 99.0 8E-11 1.7E-15 104.2 1.8 40 43-85 19-59 (218)
220 PF05673 DUF815: Protein of un 99.0 6.7E-09 1.5E-13 91.1 13.8 193 31-314 22-242 (249)
221 cd03231 ABC_CcmA_heme_exporter 99.0 1.7E-10 3.7E-15 100.7 3.9 45 38-85 9-54 (201)
222 cd03230 ABC_DR_subfamily_A Thi 99.0 7.7E-11 1.7E-15 100.4 1.7 124 43-189 14-140 (173)
223 cd03265 ABC_DrrA DrrA is the A 99.0 1.3E-10 2.8E-15 103.0 3.0 45 38-85 9-54 (220)
224 COG4604 CeuD ABC-type enteroch 99.0 2.4E-10 5.2E-15 95.8 4.2 153 34-189 6-180 (252)
225 TIGR02315 ABC_phnC phosphonate 99.0 3.5E-10 7.5E-15 101.8 5.6 45 38-85 10-56 (243)
226 PRK13538 cytochrome c biogenes 99.0 9.8E-11 2.1E-15 102.5 1.9 44 39-85 11-55 (204)
227 cd03259 ABC_Carb_Solutes_like 99.0 1.2E-10 2.5E-15 102.7 2.3 45 38-85 9-54 (213)
228 cd03264 ABC_drug_resistance_li 99.0 1.2E-10 2.6E-15 102.5 2.5 145 39-189 10-175 (211)
229 cd03261 ABC_Org_Solvent_Resist 99.0 1.2E-10 2.6E-15 104.3 2.4 46 37-85 8-54 (235)
230 PF13177 DNA_pol3_delta2: DNA 99.0 2.9E-09 6.3E-14 89.5 10.5 157 40-237 1-161 (162)
231 cd03226 ABC_cobalt_CbiO_domain 99.0 1.8E-10 3.9E-15 100.9 3.3 47 36-85 6-54 (205)
232 PRK08058 DNA polymerase III su 99.0 2.9E-09 6.4E-14 99.9 11.7 174 35-248 4-179 (329)
233 cd03263 ABC_subfamily_A The AB 99.0 1.3E-10 2.8E-15 103.0 2.3 41 42-85 15-56 (220)
234 PRK05564 DNA polymerase III su 99.0 3.7E-09 8E-14 98.8 12.2 160 34-249 2-163 (313)
235 PF00308 Bac_DnaA: Bacterial d 99.0 7E-09 1.5E-13 91.6 13.2 115 163-323 97-218 (219)
236 cd03229 ABC_Class3 This class 99.0 1.1E-10 2.3E-15 100.0 1.6 129 40-189 11-145 (178)
237 TIGR01288 nodI ATP-binding ABC 99.0 1.2E-10 2.5E-15 108.4 1.9 48 35-85 10-58 (303)
238 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 1.4E-10 3E-15 102.6 2.3 41 42-85 17-58 (218)
239 KOG0735 AAA+-type ATPase [Post 99.0 4E-09 8.7E-14 103.5 12.3 74 162-248 759-845 (952)
240 PRK09493 glnQ glutamine ABC tr 99.0 1.5E-10 3.3E-15 103.9 2.5 44 39-85 11-55 (240)
241 COG0542 clpA ATP-binding subun 99.0 8.4E-09 1.8E-13 104.2 15.0 211 34-324 168-396 (786)
242 TIGR03522 GldA_ABC_ATP gliding 99.0 8.3E-11 1.8E-15 109.2 0.7 150 37-189 10-178 (301)
243 TIGR03864 PQQ_ABC_ATP ABC tran 99.0 1.2E-10 2.6E-15 104.4 1.6 44 39-85 11-55 (236)
244 KOG0729 26S proteasome regulat 99.0 6.9E-09 1.5E-13 90.9 12.4 138 163-344 270-421 (435)
245 cd03268 ABC_BcrA_bacitracin_re 99.0 1.8E-10 4E-15 101.1 2.7 144 39-189 10-171 (208)
246 COG4598 HisP ABC-type histidin 99.0 1.7E-10 3.6E-15 95.3 2.3 153 32-189 9-197 (256)
247 cd03262 ABC_HisP_GlnQ_permease 99.0 1.9E-10 4.1E-15 101.3 2.8 44 39-85 10-54 (213)
248 PRK13540 cytochrome c biogenes 99.0 2.7E-10 5.9E-15 99.4 3.7 44 39-85 11-55 (200)
249 PRK07399 DNA polymerase III su 99.0 5.4E-09 1.2E-13 97.1 12.5 187 34-249 2-193 (314)
250 PRK11247 ssuB aliphatic sulfon 99.0 2.4E-10 5.1E-15 103.6 3.3 49 34-85 17-66 (257)
251 cd03256 ABC_PhnC_transporter A 99.0 1.9E-10 4E-15 103.4 2.5 45 38-85 9-55 (241)
252 TIGR01189 ccmA heme ABC export 99.0 1.8E-10 4E-15 100.3 2.3 44 39-85 10-54 (198)
253 cd03214 ABC_Iron-Siderophores_ 99.0 5.3E-10 1.2E-14 95.8 4.9 127 40-189 10-142 (180)
254 cd03269 ABC_putative_ATPase Th 99.0 1.1E-10 2.3E-15 102.7 0.5 44 39-85 10-54 (210)
255 KOG2035 Replication factor C, 99.0 9.3E-08 2E-12 84.4 18.5 62 165-241 129-190 (351)
256 cd03296 ABC_CysA_sulfate_impor 99.0 3.1E-10 6.7E-15 101.9 3.2 47 36-85 9-56 (239)
257 cd03293 ABC_NrtD_SsuB_transpor 99.0 1.4E-10 3E-15 102.8 0.9 41 42-85 17-58 (220)
258 cd03225 ABC_cobalt_CbiO_domain 99.0 2.9E-10 6.2E-15 100.1 2.9 41 42-85 14-55 (211)
259 TIGR00960 3a0501s02 Type II (G 99.0 1.6E-10 3.5E-15 102.1 1.2 40 43-85 17-57 (216)
260 TIGR02673 FtsE cell division A 99.0 2.6E-10 5.5E-15 100.6 2.5 41 42-85 15-56 (214)
261 PRK11650 ugpC glycerol-3-phosp 99.0 2.1E-10 4.4E-15 108.6 2.0 143 40-189 15-179 (356)
262 TIGR00678 holB DNA polymerase 99.0 1.2E-08 2.7E-13 88.0 12.9 69 162-246 95-163 (188)
263 cd03235 ABC_Metallic_Cations A 99.0 3.7E-10 8.1E-15 99.5 3.5 45 38-85 8-53 (213)
264 cd03219 ABC_Mj1267_LivG_branch 99.0 2.3E-10 5.1E-15 102.4 2.2 45 38-85 9-54 (236)
265 cd03301 ABC_MalK_N The N-termi 99.0 2.7E-10 5.8E-15 100.4 2.5 46 37-85 8-54 (213)
266 COG4987 CydC ABC-type transpor 99.0 1.8E-09 3.8E-14 103.3 8.1 143 43-189 352-519 (573)
267 TIGR01166 cbiO cobalt transpor 98.9 4.5E-10 9.8E-15 97.1 3.6 43 40-85 3-46 (190)
268 KOG0651 26S proteasome regulat 98.9 1E-09 2.2E-14 98.1 5.7 75 163-247 225-312 (388)
269 TIGR03608 L_ocin_972_ABC putat 98.9 2.2E-10 4.8E-15 100.4 1.5 46 37-85 6-52 (206)
270 COG1067 LonB Predicted ATP-dep 98.9 4.9E-09 1.1E-13 104.9 11.2 166 151-340 213-398 (647)
271 PRK13539 cytochrome c biogenes 98.9 4.4E-10 9.5E-15 98.6 3.3 45 38-85 11-56 (207)
272 cd03258 ABC_MetN_methionine_tr 98.9 3.3E-10 7.2E-15 101.3 2.5 40 43-85 19-59 (233)
273 PRK04132 replication factor C 98.9 1.1E-08 2.4E-13 105.2 13.9 150 164-367 631-800 (846)
274 cd03224 ABC_TM1139_LivF_branch 98.9 4.1E-10 8.8E-15 99.9 3.0 44 39-85 10-54 (222)
275 TIGR03265 PhnT2 putative 2-ami 98.9 1.5E-10 3.3E-15 109.4 0.2 147 36-189 11-179 (353)
276 PRK11432 fbpC ferric transport 98.9 2.5E-10 5.4E-15 107.8 1.6 149 34-189 11-181 (351)
277 TIGR03410 urea_trans_UrtE urea 98.9 4.8E-10 1.1E-14 100.0 3.4 45 38-85 9-54 (230)
278 COG0593 DnaA ATPase involved i 98.9 1.2E-07 2.5E-12 89.9 19.4 149 164-365 176-331 (408)
279 COG1118 CysA ABC-type sulfate/ 98.9 5.9E-10 1.3E-14 99.7 3.7 149 37-189 10-182 (345)
280 PRK13543 cytochrome c biogenes 98.9 5.9E-10 1.3E-14 98.3 3.6 49 34-85 16-65 (214)
281 COG4133 CcmA ABC-type transpor 98.9 1.5E-09 3.3E-14 90.5 5.8 50 34-86 7-57 (209)
282 cd03218 ABC_YhbG The ABC trans 98.9 3.4E-10 7.4E-15 101.1 2.1 45 38-85 9-54 (232)
283 PRK10908 cell division protein 98.9 6.6E-10 1.4E-14 98.6 3.9 41 42-85 15-56 (222)
284 PRK10253 iron-enterobactin tra 98.9 6.4E-10 1.4E-14 101.4 3.8 48 35-85 13-61 (265)
285 PRK09452 potA putrescine/sperm 98.9 3.1E-10 6.6E-15 108.0 1.7 149 34-189 19-189 (375)
286 cd03246 ABCC_Protease_Secretio 98.9 4.8E-10 1E-14 95.5 2.7 120 43-189 16-141 (173)
287 PRK11000 maltose/maltodextrin 98.9 2.7E-10 5.8E-15 108.5 1.3 147 36-189 10-178 (369)
288 cd03233 ABC_PDR_domain1 The pl 98.9 3.2E-10 7E-15 99.1 1.6 135 42-189 20-163 (202)
289 PRK09536 btuD corrinoid ABC tr 98.9 3.3E-10 7.1E-15 108.5 1.7 49 34-85 8-57 (402)
290 cd03228 ABCC_MRP_Like The MRP 98.9 5.9E-10 1.3E-14 94.8 3.0 120 43-189 16-141 (171)
291 COG1119 ModF ABC-type molybden 98.9 1.4E-09 3.1E-14 94.5 5.4 49 34-85 36-85 (257)
292 PRK10895 lipopolysaccharide AB 98.9 7.6E-10 1.7E-14 99.5 3.8 45 38-85 12-57 (241)
293 COG2274 SunT ABC-type bacterio 98.9 1.3E-09 2.8E-14 111.0 5.6 149 37-189 479-654 (709)
294 PRK11248 tauB taurine transpor 98.9 5.5E-10 1.2E-14 101.2 2.7 44 39-85 11-55 (255)
295 cd03247 ABCC_cytochrome_bd The 98.9 2.3E-10 4.9E-15 98.0 0.0 125 43-189 16-143 (178)
296 TIGR03411 urea_trans_UrtD urea 98.9 6.7E-10 1.4E-14 99.9 3.0 44 39-85 12-56 (242)
297 KOG0743 AAA+-type ATPase [Post 98.9 1.8E-08 3.8E-13 94.9 12.5 151 34-250 199-382 (457)
298 cd03294 ABC_Pro_Gly_Bertaine T 98.9 5E-10 1.1E-14 102.3 2.2 49 34-85 29-78 (269)
299 COG4559 ABC-type hemin transpo 98.9 2.5E-09 5.4E-14 90.9 6.1 50 33-85 5-55 (259)
300 PRK11300 livG leucine/isoleuci 98.9 5E-10 1.1E-14 101.5 2.1 45 38-85 14-59 (255)
301 TIGR01186 proV glycine betaine 98.9 3.7E-10 8E-15 106.8 1.2 145 40-189 4-174 (363)
302 PRK15455 PrkA family serine pr 98.9 4.4E-08 9.5E-13 95.7 15.5 212 34-248 74-343 (644)
303 COG0488 Uup ATPase components 98.9 9.6E-10 2.1E-14 108.3 4.1 140 42-189 335-484 (530)
304 cd03292 ABC_FtsE_transporter F 98.9 5.2E-10 1.1E-14 98.7 2.0 41 42-85 14-55 (214)
305 TIGR00972 3a0107s01c2 phosphat 98.9 9.3E-10 2E-14 99.3 3.7 44 38-84 10-54 (247)
306 cd03216 ABC_Carb_Monos_I This 98.9 4.7E-10 1E-14 94.6 1.6 115 39-189 10-127 (163)
307 PRK11124 artP arginine transpo 98.9 5E-10 1.1E-14 100.7 1.9 46 37-85 10-56 (242)
308 TIGR03005 ectoine_ehuA ectoine 98.9 4.8E-10 1E-14 101.5 1.7 45 38-85 9-54 (252)
309 TIGR02211 LolD_lipo_ex lipopro 98.9 4.5E-10 9.8E-15 99.6 1.4 40 43-85 19-59 (221)
310 PRK11264 putative amino-acid A 98.9 6.3E-10 1.4E-14 100.6 2.3 48 35-85 9-57 (250)
311 PRK13638 cbiO cobalt transport 98.9 8.6E-10 1.9E-14 100.9 3.2 45 38-85 10-55 (271)
312 PRK10851 sulfate/thiosulfate t 98.9 5E-10 1.1E-14 105.9 1.6 146 37-189 10-181 (353)
313 TIGR00602 rad24 checkpoint pro 98.9 2E-08 4.3E-13 100.8 13.1 51 32-82 80-135 (637)
314 cd03260 ABC_PstB_phosphate_tra 98.9 5.6E-10 1.2E-14 99.4 1.7 40 39-81 10-50 (227)
315 TIGR03258 PhnT 2-aminoethylpho 98.9 3.8E-10 8.2E-15 106.9 0.7 151 35-189 11-182 (362)
316 PRK10575 iron-hydroxamate tran 98.9 7.5E-10 1.6E-14 101.0 2.4 45 38-85 20-65 (265)
317 cd03298 ABC_ThiQ_thiamine_tran 98.9 2.1E-09 4.6E-14 94.5 5.2 36 47-85 16-52 (211)
318 COG4619 ABC-type uncharacteriz 98.9 2.7E-09 5.9E-14 87.3 5.3 140 42-187 16-176 (223)
319 PRK10247 putative ABC transpor 98.9 1.6E-09 3.4E-14 96.3 4.3 48 35-85 13-61 (225)
320 cd03295 ABC_OpuCA_Osmoprotecti 98.9 5.9E-10 1.3E-14 100.3 1.5 41 42-85 14-55 (242)
321 cd03267 ABC_NatA_like Similar 98.9 7.5E-10 1.6E-14 99.2 2.0 44 39-85 31-75 (236)
322 PRK11231 fecE iron-dicitrate t 98.9 7.4E-10 1.6E-14 100.4 1.9 47 36-85 9-56 (255)
323 PRK14250 phosphate ABC transpo 98.9 1.5E-09 3.2E-14 97.6 3.7 44 39-85 13-57 (241)
324 PRK11629 lolD lipoprotein tran 98.9 6.1E-10 1.3E-14 99.6 1.1 40 43-85 23-63 (233)
325 cd03213 ABCG_EPDR ABCG transpo 98.9 6.5E-10 1.4E-14 96.5 1.3 127 42-189 22-156 (194)
326 PF14532 Sigma54_activ_2: Sigm 98.9 8.7E-09 1.9E-13 84.3 7.9 60 159-230 65-130 (138)
327 TIGR03740 galliderm_ABC gallid 98.9 1E-09 2.3E-14 97.4 2.6 43 40-85 11-54 (223)
328 PRK11607 potG putrescine trans 98.9 8.3E-10 1.8E-14 105.2 2.0 148 34-188 24-193 (377)
329 PRK11614 livF leucine/isoleuci 98.9 1.2E-09 2.5E-14 98.0 2.7 44 39-85 15-59 (237)
330 COG1122 CbiO ABC-type cobalt t 98.9 1.4E-09 3E-14 96.4 3.1 142 43-189 18-183 (235)
331 cd03257 ABC_NikE_OppD_transpor 98.8 1.9E-09 4E-14 96.0 3.9 40 43-85 19-59 (228)
332 cd03254 ABCC_Glucan_exporter_l 98.8 1.3E-09 2.8E-14 97.1 2.9 40 43-85 17-57 (229)
333 PRK11831 putative ABC transpor 98.8 7.9E-10 1.7E-14 101.0 1.5 48 35-85 13-61 (269)
334 COG4178 ABC-type uncharacteriz 98.8 4.3E-09 9.3E-14 103.6 6.7 144 43-189 407-560 (604)
335 PRK09984 phosphonate/organopho 98.8 1.4E-09 3.1E-14 99.0 3.1 46 36-84 11-57 (262)
336 PRK09544 znuC high-affinity zi 98.8 3.1E-09 6.8E-14 96.0 5.3 47 36-85 11-58 (251)
337 PRK10771 thiQ thiamine transpo 98.8 5.6E-09 1.2E-13 93.3 6.9 136 47-189 17-174 (232)
338 PRK10584 putative ABC transpor 98.8 1.3E-09 2.9E-14 97.0 2.7 39 44-85 25-64 (228)
339 PRK13548 hmuV hemin importer A 98.8 2.3E-09 5.1E-14 97.3 4.3 45 38-85 11-56 (258)
340 cd03215 ABC_Carb_Monos_II This 98.8 1.3E-09 2.9E-14 93.5 2.6 129 44-189 15-149 (182)
341 cd03297 ABC_ModC_molybdenum_tr 98.8 1.7E-09 3.6E-14 95.4 3.2 45 35-85 6-51 (214)
342 PRK11153 metN DL-methionine tr 98.8 7.1E-10 1.5E-14 104.7 0.9 40 43-85 19-59 (343)
343 cd03300 ABC_PotA_N PotA is an 98.8 1.1E-09 2.4E-14 97.8 1.8 44 39-85 10-54 (232)
344 COG0411 LivG ABC-type branched 98.8 6.6E-10 1.4E-14 96.5 0.1 52 32-86 7-59 (250)
345 PRK13644 cbiO cobalt transport 98.8 1.5E-09 3.3E-14 99.3 2.4 41 42-85 15-56 (274)
346 PRK05707 DNA polymerase III su 98.8 1.7E-08 3.6E-13 94.4 9.2 72 162-249 105-176 (328)
347 COG4650 RtcR Sigma54-dependent 98.8 1.4E-08 3.1E-13 90.2 8.3 221 58-338 209-440 (531)
348 PF08298 AAA_PrkA: PrkA AAA do 98.8 1.4E-08 3.1E-13 93.6 8.5 241 35-304 59-351 (358)
349 cd03222 ABC_RNaseL_inhibitor T 98.8 1.2E-09 2.6E-14 92.9 1.4 108 35-189 6-116 (177)
350 KOG0741 AAA+-type ATPase [Post 98.8 6.7E-09 1.4E-13 98.8 6.4 133 166-341 327-490 (744)
351 TIGR01277 thiQ thiamine ABC tr 98.8 4.8E-09 1E-13 92.5 5.2 137 46-189 15-173 (213)
352 TIGR02142 modC_ABC molybdenum 98.8 2E-09 4.4E-14 102.1 3.0 140 47-189 15-176 (354)
353 PRK15439 autoinducer 2 ABC tra 98.8 2.6E-09 5.7E-14 106.4 3.8 49 34-85 16-65 (510)
354 PRK14267 phosphate ABC transpo 98.8 2.2E-09 4.8E-14 97.2 3.0 45 36-83 11-56 (253)
355 PRK13635 cbiO cobalt transport 98.8 3.2E-09 7E-14 97.4 4.1 40 43-85 21-61 (279)
356 PRK13632 cbiO cobalt transport 98.8 2.7E-09 5.9E-14 97.6 3.5 41 42-85 22-63 (271)
357 TIGR03873 F420-0_ABC_ATP propo 98.8 2.6E-09 5.6E-14 96.9 3.3 46 37-85 9-55 (256)
358 PRK13652 cbiO cobalt transport 98.8 2.6E-09 5.6E-14 98.0 3.3 42 42-86 17-59 (277)
359 PRK11144 modC molybdate transp 98.8 4.4E-09 9.4E-14 99.7 4.9 139 47-189 16-173 (352)
360 PRK10744 pstB phosphate transp 98.8 3.6E-09 7.7E-14 96.2 4.1 45 35-82 19-64 (260)
361 TIGR02868 CydC thiol reductant 98.8 2E-09 4.3E-14 107.9 2.6 41 42-85 348-389 (529)
362 PRK14247 phosphate ABC transpo 98.8 2.6E-09 5.7E-14 96.5 3.0 42 39-83 13-55 (250)
363 TIGR02314 ABC_MetN D-methionin 98.8 2.4E-09 5.2E-14 100.7 2.8 142 43-189 19-185 (343)
364 TIGR00968 3a0106s01 sulfate AB 98.8 1.8E-09 3.9E-14 96.8 1.9 44 39-85 10-54 (237)
365 PRK13636 cbiO cobalt transport 98.8 3.3E-09 7.2E-14 97.6 3.6 41 42-85 19-60 (283)
366 PRK13541 cytochrome c biogenes 98.8 2.6E-09 5.5E-14 92.8 2.7 35 48-85 19-54 (195)
367 PRK10070 glycine betaine trans 98.8 1.1E-09 2.4E-14 104.8 0.3 44 39-85 38-82 (400)
368 PRK13547 hmuV hemin importer A 98.8 5.1E-09 1.1E-13 95.7 4.6 44 38-84 10-54 (272)
369 KOG1051 Chaperone HSP104 and r 98.8 1.9E-08 4.1E-13 103.0 9.1 136 37-215 563-710 (898)
370 KOG0062 ATPase component of AB 98.8 7.7E-09 1.7E-13 98.3 5.8 43 34-79 85-128 (582)
371 TIGR02982 heterocyst_DevA ABC 98.8 2.3E-09 5.1E-14 94.9 2.2 41 42-85 18-59 (220)
372 PRK14248 phosphate ABC transpo 98.8 4.6E-09 9.9E-14 96.0 4.1 46 34-82 26-72 (268)
373 PRK10619 histidine/lysine/argi 98.8 1.3E-09 2.9E-14 98.8 0.6 48 35-85 11-59 (257)
374 PRK10762 D-ribose transporter 98.8 2.8E-09 6E-14 106.1 2.9 49 34-85 9-58 (501)
375 PRK11174 cysteine/glutathione 98.8 7.2E-09 1.6E-13 105.3 5.9 142 41-189 362-530 (588)
376 PRK14273 phosphate ABC transpo 98.8 4.3E-09 9.3E-14 95.4 3.8 46 35-83 13-59 (254)
377 cd03245 ABCC_bacteriocin_expor 98.8 6.4E-09 1.4E-13 92.1 4.8 40 43-85 18-58 (220)
378 PRK13648 cbiO cobalt transport 98.8 3.1E-09 6.7E-14 97.1 2.8 40 43-85 23-63 (269)
379 COG0470 HolB ATPase involved i 98.8 2.6E-08 5.7E-13 93.4 9.1 61 162-237 108-168 (325)
380 cd03223 ABCD_peroxisomal_ALDP 98.8 3.1E-09 6.6E-14 89.9 2.5 119 43-189 15-136 (166)
381 COG4152 ABC-type uncharacteriz 98.8 2.5E-09 5.3E-14 92.7 1.9 50 33-85 6-56 (300)
382 KOG0066 eIF2-interacting prote 98.8 1.7E-08 3.7E-13 94.2 7.5 142 40-189 598-749 (807)
383 PF12774 AAA_6: Hydrolytic ATP 98.8 2.4E-07 5.2E-12 82.1 14.6 84 164-249 85-178 (231)
384 cd03248 ABCC_TAP TAP, the Tran 98.8 1E-08 2.3E-13 91.1 5.9 40 43-85 28-68 (226)
385 PRK10938 putative molybdenum t 98.8 1E-08 2.2E-13 101.8 6.5 49 34-85 8-57 (490)
386 PRK13637 cbiO cobalt transport 98.8 3E-09 6.5E-14 98.1 2.5 40 43-85 21-61 (287)
387 KOG0058 Peptide exporter, ABC 98.8 5.1E-09 1.1E-13 103.6 4.2 41 43-86 482-523 (716)
388 PRK09700 D-allose transporter 98.8 3.1E-09 6.8E-14 106.0 2.8 49 34-85 10-59 (510)
389 PRK14241 phosphate transporter 98.8 4.6E-09 9.9E-14 95.4 3.6 43 38-83 13-56 (258)
390 COG1135 AbcC ABC-type metal io 98.8 3.9E-09 8.5E-14 94.7 3.0 144 42-189 19-186 (339)
391 PRK13657 cyclic beta-1,2-gluca 98.8 6.8E-09 1.5E-13 105.4 5.1 142 42-189 348-516 (588)
392 PRK14259 phosphate ABC transpo 98.8 4.2E-09 9E-14 96.2 3.3 45 35-82 19-64 (269)
393 PF12775 AAA_7: P-loop contain 98.8 2.8E-08 6E-13 90.5 8.6 82 163-247 100-189 (272)
394 COG0488 Uup ATPase components 98.8 6.3E-09 1.4E-13 102.6 4.7 49 34-85 8-57 (530)
395 TIGR01184 ntrCD nitrate transp 98.8 4.2E-09 9.1E-14 94.0 3.1 35 48-85 4-39 (230)
396 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 1.8E-09 3.9E-14 95.9 0.7 49 34-85 27-76 (224)
397 TIGR02203 MsbA_lipidA lipid A 98.8 7.6E-09 1.6E-13 104.8 5.3 40 43-85 346-386 (571)
398 COG4148 ModC ABC-type molybdat 98.8 7.6E-09 1.6E-13 91.4 4.5 134 56-189 23-173 (352)
399 cd03232 ABC_PDR_domain2 The pl 98.8 1.5E-09 3.2E-14 94.1 0.1 125 43-189 21-153 (192)
400 cd03217 ABC_FeS_Assembly ABC-t 98.8 2.5E-09 5.5E-14 93.2 1.6 131 39-189 10-149 (200)
401 PRK13647 cbiO cobalt transport 98.8 3.5E-09 7.5E-14 97.0 2.5 41 42-85 18-59 (274)
402 TIGR03415 ABC_choXWV_ATP choli 98.8 1.8E-09 3.9E-14 102.7 0.6 150 37-189 32-209 (382)
403 cd03252 ABCC_Hemolysin The ABC 98.8 4.3E-09 9.4E-14 94.3 3.0 40 43-85 16-56 (237)
404 KOG1808 AAA ATPase containing 98.7 3.3E-08 7.2E-13 107.2 10.0 141 56-238 437-587 (1856)
405 PRK13639 cbiO cobalt transport 98.7 3E-09 6.5E-14 97.5 1.8 40 43-85 16-56 (275)
406 PRK13633 cobalt transporter AT 98.7 5.4E-09 1.2E-13 96.1 3.4 40 43-85 24-64 (280)
407 PRK13650 cbiO cobalt transport 98.7 6.4E-09 1.4E-13 95.5 3.9 142 43-189 21-185 (279)
408 PRK14242 phosphate transporter 98.7 5.1E-09 1.1E-13 94.8 3.1 44 36-82 13-57 (253)
409 cd03299 ABC_ModC_like Archeal 98.7 3.6E-09 7.9E-14 94.7 2.0 39 44-85 14-53 (235)
410 PRK13640 cbiO cobalt transport 98.7 6.9E-09 1.5E-13 95.4 3.9 39 43-84 21-60 (282)
411 PRK13549 xylose transporter AT 98.7 5E-09 1.1E-13 104.4 3.2 47 34-83 10-57 (506)
412 cd03251 ABCC_MsbA MsbA is an e 98.7 8.8E-09 1.9E-13 92.1 4.4 40 43-85 16-56 (234)
413 PRK14254 phosphate ABC transpo 98.7 3.7E-09 8E-14 97.3 2.0 45 35-82 45-90 (285)
414 PRK11176 lipid transporter ATP 98.7 1.1E-08 2.5E-13 103.7 5.6 142 42-189 356-525 (582)
415 cd03253 ABCC_ATM1_transporter 98.7 4.3E-09 9.3E-14 94.2 2.3 40 43-85 15-55 (236)
416 PRK10636 putative ABC transpor 98.7 8.1E-09 1.8E-13 105.4 4.5 49 34-85 6-55 (638)
417 COG4525 TauB ABC-type taurine 98.7 6.8E-09 1.5E-13 87.1 3.2 41 43-86 19-60 (259)
418 PRK14270 phosphate ABC transpo 98.7 9.1E-09 2E-13 93.1 4.2 43 38-83 13-56 (251)
419 KOG0730 AAA+-type ATPase [Post 98.7 2.4E-07 5.3E-12 90.8 14.1 72 164-248 279-361 (693)
420 cd03244 ABCC_MRP_domain2 Domai 98.7 1.9E-08 4.2E-13 89.1 6.1 40 43-85 18-58 (221)
421 PRK10982 galactose/methyl gala 98.7 5.3E-09 1.1E-13 103.9 2.6 48 35-85 4-52 (491)
422 PRK14268 phosphate ABC transpo 98.7 7.3E-09 1.6E-13 94.1 3.3 46 35-83 18-64 (258)
423 PRK03695 vitamin B12-transport 98.7 2.1E-08 4.6E-13 90.5 6.3 37 44-83 11-48 (248)
424 KOG0732 AAA+-type ATPase conta 98.7 2.3E-07 5E-12 95.9 14.4 159 34-249 263-449 (1080)
425 cd03369 ABCC_NFT1 Domain 2 of 98.7 1.7E-08 3.7E-13 88.5 5.5 140 43-189 22-170 (207)
426 PRK14256 phosphate ABC transpo 98.7 6.5E-09 1.4E-13 94.1 2.9 43 37-82 12-55 (252)
427 TIGR03796 NHPM_micro_ABC1 NHPM 98.7 7.9E-09 1.7E-13 107.2 3.8 142 42-189 492-660 (710)
428 KOG1969 DNA replication checkp 98.7 2.5E-07 5.5E-12 91.5 13.9 124 162-324 386-521 (877)
429 PRK15112 antimicrobial peptide 98.7 7.7E-09 1.7E-13 94.4 3.3 40 43-85 27-67 (267)
430 PRK14235 phosphate transporter 98.7 4.8E-09 1E-13 95.7 1.9 47 34-83 24-71 (267)
431 cd03289 ABCC_CFTR2 The CFTR su 98.7 1.2E-08 2.7E-13 93.1 4.5 39 42-83 17-56 (275)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 4.1E-09 9E-14 86.8 1.2 99 43-189 14-115 (144)
433 PRK14251 phosphate ABC transpo 98.7 6.7E-09 1.5E-13 93.9 2.7 45 35-82 10-55 (251)
434 PRK06871 DNA polymerase III su 98.7 2.1E-07 4.6E-12 86.4 12.6 70 163-248 107-176 (325)
435 TIGR02204 MsbA_rel ABC transpo 98.7 1.6E-08 3.4E-13 102.6 5.5 40 43-85 354-394 (576)
436 TIGR01978 sufC FeS assembly AT 98.7 5.7E-09 1.2E-13 93.9 2.0 41 38-81 9-50 (243)
437 COG4988 CydD ABC-type transpor 98.7 1.2E-08 2.5E-13 99.1 4.2 49 34-85 325-375 (559)
438 cd03237 ABC_RNaseL_inhibitor_d 98.7 2.6E-08 5.7E-13 89.6 6.2 30 56-85 23-53 (246)
439 TIGR03797 NHPM_micro_ABC2 NHPM 98.7 9.1E-09 2E-13 106.3 3.6 141 42-189 466-633 (686)
440 PRK14274 phosphate ABC transpo 98.7 7.6E-09 1.6E-13 94.0 2.7 45 35-82 18-63 (259)
441 cd03234 ABCG_White The White s 98.7 1.2E-08 2.6E-13 90.8 3.8 38 42-82 20-58 (226)
442 PRK14272 phosphate ABC transpo 98.7 8.7E-09 1.9E-13 93.2 2.8 45 36-83 11-56 (252)
443 PRK13634 cbiO cobalt transport 98.7 6.4E-09 1.4E-13 96.0 1.9 40 43-85 21-61 (290)
444 PRK07993 DNA polymerase III su 98.7 2.8E-07 6E-12 86.4 12.9 70 162-248 107-177 (334)
445 TIGR02857 CydD thiol reductant 98.7 1E-08 2.2E-13 102.8 3.5 141 43-189 336-503 (529)
446 COG1123 ATPase components of v 98.7 1.3E-08 2.9E-13 98.9 4.1 145 42-189 304-474 (539)
447 PRK14265 phosphate ABC transpo 98.7 9.9E-09 2.1E-13 94.0 3.1 45 35-82 26-71 (274)
448 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 1.1E-08 2.3E-13 91.9 3.2 40 43-85 17-57 (238)
449 PRK14249 phosphate ABC transpo 98.7 1.2E-08 2.6E-13 92.3 3.6 43 39-84 14-57 (251)
450 PRK13651 cobalt transporter AT 98.7 9.1E-09 2E-13 95.5 2.8 40 43-85 21-61 (305)
451 PRK14240 phosphate transporter 98.7 1.2E-08 2.6E-13 92.2 3.5 41 39-82 13-54 (250)
452 PRK15177 Vi polysaccharide exp 98.7 1.8E-08 3.9E-13 88.8 4.5 38 45-85 3-41 (213)
453 PRK13641 cbiO cobalt transport 98.7 6E-09 1.3E-13 96.1 1.5 40 43-85 21-61 (287)
454 PRK14246 phosphate ABC transpo 98.7 1.6E-08 3.5E-13 91.7 4.3 49 34-85 15-64 (257)
455 PRK14244 phosphate ABC transpo 98.7 6E-09 1.3E-13 94.2 1.5 41 39-82 15-56 (251)
456 TIGR01842 type_I_sec_PrtD type 98.7 1.2E-08 2.7E-13 102.5 3.8 41 42-85 331-372 (544)
457 PRK11701 phnK phosphonate C-P 98.7 1E-08 2.2E-13 93.2 2.9 48 35-85 12-60 (258)
458 TIGR01193 bacteriocin_ABC ABC- 98.7 7.8E-09 1.7E-13 107.2 2.4 144 42-189 487-656 (708)
459 PRK14243 phosphate transporter 98.7 1.6E-08 3.4E-13 92.2 4.0 45 35-82 16-61 (264)
460 PRK14269 phosphate ABC transpo 98.7 8.9E-09 1.9E-13 92.8 2.4 46 34-82 7-53 (246)
461 COG1134 TagH ABC-type polysacc 98.7 1.1E-08 2.3E-13 89.2 2.7 134 41-189 39-192 (249)
462 PRK14237 phosphate transporter 98.7 1.1E-08 2.4E-13 93.4 2.8 44 36-82 27-71 (267)
463 cd03290 ABCC_SUR1_N The SUR do 98.7 3.3E-08 7.1E-13 87.5 5.8 41 42-85 14-55 (218)
464 PRK14260 phosphate ABC transpo 98.7 9.9E-09 2.1E-13 93.3 2.4 45 36-83 14-59 (259)
465 PRK14236 phosphate transporter 98.7 1.6E-08 3.4E-13 92.6 3.8 46 34-82 30-76 (272)
466 PRK13646 cbiO cobalt transport 98.7 1.2E-08 2.7E-13 94.0 2.9 40 43-85 21-61 (286)
467 COG4618 ArpD ABC-type protease 98.7 1.3E-08 2.9E-13 96.7 3.2 42 41-85 348-390 (580)
468 PRK13643 cbiO cobalt transport 98.7 1.5E-08 3.3E-13 93.5 3.5 40 43-85 20-60 (288)
469 PRK14253 phosphate ABC transpo 98.6 1.6E-08 3.4E-13 91.4 3.4 47 34-83 8-55 (249)
470 PRK14258 phosphate ABC transpo 98.6 1E-08 2.3E-13 93.2 2.3 44 38-84 16-60 (261)
471 cd03236 ABC_RNaseL_inhibitor_d 98.6 2.3E-08 5.1E-13 90.4 4.5 46 37-86 8-55 (255)
472 PRK13546 teichoic acids export 98.6 7.3E-09 1.6E-13 94.2 1.1 40 43-85 38-78 (264)
473 cd03250 ABCC_MRP_domain1 Domai 98.6 4.1E-08 8.8E-13 85.9 5.9 40 43-85 19-59 (204)
474 PRK15079 oligopeptide ABC tran 98.6 1E-08 2.2E-13 96.2 2.2 40 43-85 35-75 (331)
475 PRK13649 cbiO cobalt transport 98.6 9.3E-09 2E-13 94.5 1.8 40 43-85 21-61 (280)
476 PRK14238 phosphate transporter 98.6 1.9E-08 4.2E-13 91.9 3.9 46 34-82 29-75 (271)
477 PRK11288 araG L-arabinose tran 98.6 7.6E-09 1.6E-13 103.0 1.3 48 35-85 10-58 (501)
478 PRK15056 manganese/iron transp 98.6 1.3E-08 2.9E-13 93.1 2.8 41 42-85 20-61 (272)
479 COG4608 AppF ABC-type oligopep 98.6 4.2E-08 9.1E-13 87.1 5.8 122 43-189 27-154 (268)
480 PRK14261 phosphate ABC transpo 98.6 1.6E-08 3.5E-13 91.5 3.2 42 38-82 15-57 (253)
481 PRK13645 cbiO cobalt transport 98.6 7.9E-09 1.7E-13 95.4 1.2 39 44-85 26-65 (289)
482 PRK10790 putative multidrug tr 98.6 2.8E-08 6.1E-13 101.0 5.3 41 42-85 354-395 (592)
483 PRK14263 phosphate ABC transpo 98.6 1.2E-08 2.7E-13 92.7 2.4 43 38-83 17-60 (261)
484 TIGR02323 CP_lyasePhnK phospho 98.6 1.9E-08 4.2E-13 91.0 3.7 44 39-85 13-57 (253)
485 PRK11819 putative ABC transpor 98.6 1E-08 2.2E-13 103.3 2.0 49 34-85 11-61 (556)
486 TIGR03375 type_I_sec_LssB type 98.6 1.5E-08 3.2E-13 105.0 3.2 142 42-189 478-646 (694)
487 PRK14239 phosphate transporter 98.6 1.6E-08 3.6E-13 91.4 3.1 40 39-81 15-55 (252)
488 PRK15064 ABC transporter ATP-b 98.6 1.4E-08 3E-13 101.8 2.8 48 35-85 7-55 (530)
489 PRK08769 DNA polymerase III su 98.6 4E-07 8.7E-12 84.5 12.2 71 163-249 113-183 (319)
490 KOG0990 Replication factor C, 98.6 4.2E-07 9.2E-12 81.9 11.8 226 33-344 38-275 (360)
491 PRK14275 phosphate ABC transpo 98.6 1.1E-08 2.4E-13 94.2 1.9 42 38-82 48-90 (286)
492 PRK10419 nikE nickel transport 98.6 1.2E-08 2.7E-13 93.0 2.1 41 42-85 25-66 (268)
493 TIGR00958 3a01208 Conjugate Tr 98.6 3.4E-08 7.3E-13 102.4 5.6 40 43-85 495-535 (711)
494 PRK13642 cbiO cobalt transport 98.6 2.4E-08 5.3E-13 91.6 4.1 39 44-85 22-61 (277)
495 TIGR02769 nickel_nikE nickel i 98.6 1.5E-08 3.3E-13 92.3 2.7 40 43-85 25-65 (265)
496 TIGR02770 nickel_nikD nickel i 98.6 1.9E-08 4.1E-13 89.7 3.1 34 47-83 4-38 (230)
497 TIGR01192 chvA glucan exporter 98.6 1.7E-08 3.7E-13 102.3 3.2 41 42-85 348-389 (585)
498 PRK14264 phosphate ABC transpo 98.6 2.1E-08 4.5E-13 93.3 3.5 45 35-82 51-96 (305)
499 PRK11160 cysteine/glutathione 98.6 4.9E-08 1.1E-12 98.8 6.4 142 42-189 353-520 (574)
500 PRK10789 putative multidrug tr 98.6 1.8E-08 3.8E-13 101.9 3.2 41 42-85 328-369 (569)
No 1
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=100.00 E-value=1.6e-46 Score=347.68 Aligned_cols=345 Identities=74% Similarity=1.156 Sum_probs=304.3
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
++.+.++.+.|+.++||++++.++.++.++|..|+++|.||+||||||++|.++.+++......+.+|++++.++....+
T Consensus 6 ~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 6 LKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred hhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 44566788999999999999999999999988889999999999999999999999987665556688887777777777
Q ss_pred hhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
.+.+....+....+.....+++.+|.+.+++.++|.+|+..++.+|...+.+|++.+++++++|+||++++++..|+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 66665443333333334467788899999999999999999999998888999999999999999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
+.|+++.+++.+.|.+..++.+|++++|.||.++.++++++|||.+++.+.+|...+.+..|+.+...+..++..+...+
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~ 245 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKY 245 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhh
Confidence 99999998888889899999999999999998888999999999999999999877889999998765555555665555
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
...+..+..+|..++...+.|.+++++..+|.+++...|..|+|+.+.+++.|++.|+++||+.|+++||+.++..|+.|
T Consensus 246 ~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 246 EESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred ccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 45455688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHhhhC
Q 017575 345 RLRKDPLESIDSGLLIIEKFYEVFS 369 (369)
Q Consensus 345 r~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
|+...|..+.+.++.+++++.+.|+
T Consensus 326 R~~~~p~~~~~~~~~~~~~~~~~~~ 350 (350)
T CHL00081 326 RLRKDPLESIDSGDKVQKVFKEVFG 350 (350)
T ss_pred hCcCCcccccCchHHHHHHHHHhcC
Confidence 9999898888888999999998875
No 2
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=4.8e-44 Score=331.61 Aligned_cols=336 Identities=68% Similarity=1.053 Sum_probs=285.8
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.|+.|+||+.++.++.++++++..|+++|.|+||+||||+++++++++++..+..+.++++.+..+......+....+..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 58899999999999999999887889999999999999999999999987666566677766555554444333322111
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
..+.......++..+|.+.+++.+.|.+++...+..|...+.+|++.+++++++|+||++++++..|+.|++.|+++.++
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 11111111245567888899999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHH
Q 017575 194 VEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQ 273 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (369)
+.+.|.+..++..|.+++|+||.++.++++++|||.+++.+++|...+.+..|+.++..+..++..+...+..++..+.+
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 88889888999999999999998888999999999999999999776788889887655544445555556666778899
Q ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCCCCC
Q 017575 274 QIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDPLES 353 (369)
Q Consensus 274 ~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~~~ 353 (369)
+|..++...+.+.++++++.+|.+++...+..|+|+.+.+++.|+++|+++||+.|+++|++.++..||.||+...|++.
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~~p~~~ 321 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRKDPLES 321 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcCCchhh
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999888
Q ss_pred CChhHHHHHHHHhhhC
Q 017575 354 IDSGLLIIEKFYEVFS 369 (369)
Q Consensus 354 ~~~~~~~~~~~~~~~~ 369 (369)
.+..+.+++++++++|
T Consensus 322 ~~~~~~~~~~~~~~~~ 337 (337)
T TIGR02030 322 IDSGSRVERVVKEVLG 337 (337)
T ss_pred ccCCCcHHHHHHHhhC
Confidence 8666668888888775
No 3
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-42 Score=314.61 Aligned_cols=320 Identities=58% Similarity=0.881 Sum_probs=296.1
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
.+.|+-++||+..+.++.+..++|.-|++||.|+.|+||||++|+|+.++++.....+++|++.+.++......+.....
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcc
Confidence 46788999999999999999999999999999999999999999999999998877799999999988766665555432
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
....++....+.+++..|...+++++.|++|+.+++.+|...+.+|++++||.||+++||+|.|+.+.++.|+.++++|+
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~ 172 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGV 172 (423)
T ss_pred ccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCC
Confidence 22344444456778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHH
Q 017575 192 NTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKL 271 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 271 (369)
..+.++|..++||.+|.+|+|+||+.+.+.++|+|||.+.+.+.+|.+.+.+..|+.++..|..+|+.|..++...+..+
T Consensus 173 n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~l 252 (423)
T COG1239 173 NDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRAL 252 (423)
T ss_pred ceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCCC
Q 017575 272 QQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDPL 351 (369)
Q Consensus 272 ~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~ 351 (369)
+.++..++.....+.+++++..+|++.+.+.++.+.|+.+.+.+.++++|.+.|+..|+.+|++.++..++.||...++-
T Consensus 253 R~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~~~~ 332 (423)
T COG1239 253 RARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRRRKPF 332 (423)
T ss_pred HHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhccccc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999988653
No 4
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=100.00 E-value=2.6e-41 Score=312.59 Aligned_cols=329 Identities=52% Similarity=0.845 Sum_probs=271.7
Q ss_pred CCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC--CCcchhhhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP--EDPEAMGIEVRE 108 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 108 (369)
.+++|+.++||+.+++++.++.+++..||+||.|+||+||||+++++++++++.....+.++++.. ..++. .+..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~--~~~~- 79 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW--AHVS- 79 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc--cccc-
Confidence 456899999999999999988765555789999999999999999999999865433344333321 11111 0000
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
+..+ .+-..+++.+|.+.+++.++|.+++...+..|...+.+|++.+++++++|+||++++++..|+.|++.|+
T Consensus 80 ----~~~~--~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~me 153 (334)
T PRK13407 80 ----STTM--IERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQ 153 (334)
T ss_pred ----CCcc--cccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHH
Confidence 0000 0011456778889999999999999999989998999999999999999999999999999999999999
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQ 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 268 (369)
++.+++.+.|.+..++..|++++|+||.++.++++++|||.+++.+++|...+.+..|+.+......++..+...+...+
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~ 233 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAED 233 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccc
Confidence 99988888899999999999999999988889999999999999999998778888898876544433444433333345
Q ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccC
Q 017575 269 AKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRK 348 (369)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~ 348 (369)
..+..+|..++...+.|.+++++..+|.+++...|.+|+|+.+.+++.|++.|.++|++.|+++||+.++..++.||+..
T Consensus 234 ~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~~ 313 (334)
T PRK13407 234 MQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALSHRLRR 313 (334)
T ss_pred cCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhccC
Confidence 56778999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHhhh
Q 017575 349 DPLESIDSGLLIIEKFYEVF 368 (369)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~ 368 (369)
.|++..+..+-++..+.+.|
T Consensus 314 ~p~~~~~~~~~~~~~~~~~~ 333 (334)
T PRK13407 314 DPLDEAGSTTRVARCVAEVL 333 (334)
T ss_pred CchhccccchhHHHHHHhhc
Confidence 88877776666777777665
No 5
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=100.00 E-value=2.7e-36 Score=303.91 Aligned_cols=313 Identities=59% Similarity=0.939 Sum_probs=267.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.|+.|+||+.++.++.++.+++..|+++|.|++|||||+++++|+.++++.....+++|++.+..++....++.......
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 57899999999999999998776778999999999999999999999987665556777765544433333333321110
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
. ....+++.++.+.++..++|.+++...+..|...+.+|++.+++++++||||++++++..|+.|++.|+++.+.
T Consensus 82 ~-----~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~ 156 (633)
T TIGR02442 82 E-----QRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNR 156 (633)
T ss_pred c-----cCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEE
Confidence 0 11245667788888999999999998888888888899999999999999999999999999999999999988
Q ss_pred eeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHH
Q 017575 194 VEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQ 273 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (369)
+.+.|.+..++..|.+|+|+||+++.++++|+|||++++.++++...+.+..++.+...+..++..+...++.+...+.+
T Consensus 157 v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (633)
T TIGR02442 157 VEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRN 236 (633)
T ss_pred EEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHH
Confidence 88889999999999999999998888999999999999999999777888888887666555666666666666667788
Q ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCCC
Q 017575 274 QIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDPL 351 (369)
Q Consensus 274 ~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~ 351 (369)
++..++...+.+.+++++..+|..++..+|+.|.|+.+.++++|+++|+++|++.|+++|+..|+.+||.||++..|.
T Consensus 237 ~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~~~p~ 314 (633)
T TIGR02442 237 RIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRRRKPF 314 (633)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhccCCCc
Confidence 899999888899999999999999999999988999999999999999999999999999999999999999987663
No 6
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=100.00 E-value=6.3e-33 Score=276.48 Aligned_cols=265 Identities=43% Similarity=0.643 Sum_probs=225.9
Q ss_pred HHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhc
Q 017575 43 EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSK 122 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (369)
.++.++.+..++|.-|+++|.|++|+|||++++.++..++...
T Consensus 2 ~~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~------------------------------------- 44 (589)
T TIGR02031 2 RAKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPPIM------------------------------------- 44 (589)
T ss_pred hHHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcCC-------------------------------------
Confidence 4677888888898889999999999999999999999985210
Q ss_pred cccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeee
Q 017575 123 INMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISIS 202 (369)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~ 202 (369)
+++.++...+.+.++|.+++...+..|...+.+|++.+++++++|+||++++++.+|+.|+++|+++.+++.+.|.+..
T Consensus 45 -pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~ 123 (589)
T TIGR02031 45 -PFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVV 123 (589)
T ss_pred -CeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCcee
Confidence 1222333345556777777666667777788899999999999999999999999999999999999999998899999
Q ss_pred ecCceEEEeecCCCC--CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHh
Q 017575 203 HPARFILIGSGNPEE--GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARS 280 (369)
Q Consensus 203 ~~~~~~li~t~n~~~--~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 280 (369)
++.+|++|+|+||.+ +.++++|+|||.+++.+.++...+.+..|+.+... .+..........+.++|..++.
T Consensus 124 ~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~------~~~~~~~~~~~~~~~~i~~ar~ 197 (589)
T TIGR02031 124 HPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERC------NEVFRMNDELELLRGQIEAARE 197 (589)
T ss_pred ecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH------hhhhhcchhhHHHHHHHHHHHH
Confidence 999999999999976 67999999999999999988777777788776421 1111122355678889999999
Q ss_pred hCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCCC
Q 017575 281 SLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDPL 351 (369)
Q Consensus 281 ~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~ 351 (369)
..+.|.++++++.+|.+++..+|+.|.|+.+.+++.|+++|+++|++.|+++|+..|+.+||.||+...|+
T Consensus 198 ~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p~ 268 (589)
T TIGR02031 198 LLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLPE 268 (589)
T ss_pred hcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999988664
No 7
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=100.00 E-value=1.6e-32 Score=270.96 Aligned_cols=249 Identities=29% Similarity=0.421 Sum_probs=222.3
Q ss_pred hHHHHHHhhhhhccC-CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhh
Q 017575 41 QEEMKLCLLLNVIDP-KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSIT 119 (369)
Q Consensus 41 ~~~~~~~l~~~l~~~-~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
++.++.++.+..++| ..|+++|.|+.|++||++++.++.+++..
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~----------------------------------- 52 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAG----------------------------------- 52 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCC-----------------------------------
Confidence 778899999988888 77889999999999999999999999621
Q ss_pred hhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecce
Q 017575 120 FSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGI 199 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~ 199 (369)
.+++.+++..+++.++|.+|++.++..|...+.+|.+.+++++||||||+|++++.+++.|++.|+++.+++.|.|.
T Consensus 53 ---~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~ 129 (584)
T PRK13406 53 ---TPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGL 129 (584)
T ss_pred ---CCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCc
Confidence 35667888999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred eeeecCceEEEeecCCC--CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHH
Q 017575 200 SISHPARFILIGSGNPE--EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIAS 277 (369)
Q Consensus 200 ~~~~~~~~~li~t~n~~--~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (369)
++++|.+|++|++.|+. .+.++++++|||++++.+.++...+.... .....+|..
T Consensus 130 s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~-----------------------~~~~~~I~~ 186 (584)
T PRK13406 130 ALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREI-----------------------PIDADDIAA 186 (584)
T ss_pred EEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhccc-----------------------CCCHHHHHH
Confidence 99999999999997754 24599999999999999999965443210 012336667
Q ss_pred HHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCC
Q 017575 278 ARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDP 350 (369)
Q Consensus 278 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~ 350 (369)
++....++.++++.++++++++..+|+.|.|+.+.+++.|+++|+++|++.|+++||.+|+.+||.||+...|
T Consensus 187 AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~~~p 259 (584)
T PRK13406 187 ARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLP 259 (584)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhccCCC
Confidence 7777778999999999999999999988999999999999999999999999999999999999999998766
No 8
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.97 E-value=6.1e-30 Score=243.27 Aligned_cols=260 Identities=18% Similarity=0.234 Sum_probs=192.8
Q ss_pred cccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
.++|++++++.+..+++ ..++++|.||||||||++|++++....... +|.... +.
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~--~~---------------- 75 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLM--TR---------------- 75 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeee--ee----------------
Confidence 47899999999988886 777899999999999999999999874211 111000 00
Q ss_pred hhhhhccccccCCCCCchHhhhcccchhHHhhhccc-ccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceee
Q 017575 117 SITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVK-AFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVE 195 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~ 195 (369)
+ .+...++|..++......|.. ....|++..++ ++|+||++++++..|+.|+++|+++.++.+
T Consensus 76 -------------f-ttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~g 139 (498)
T PRK13531 76 -------------F-STPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRNG 139 (498)
T ss_pred -------------e-cCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEecC
Confidence 0 011133333222221112332 34567776555 999999999999999999999999988764
Q ss_pred ecceeeeecCceEEEeecCCCC--CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHH
Q 017575 196 REGISISHPARFILIGSGNPEE--GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQ 273 (369)
Q Consensus 196 ~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (369)
+.+...|..|++++| |+.+ +...++++|||.+++.+++++..+.+.+++.........+ .+..+....+
T Consensus 140 --~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~------~~~~~vis~e 210 (498)
T PRK13531 140 --AHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP------VPASLQITDE 210 (498)
T ss_pred --CeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCC------CcccCCCCHH
Confidence 778888888888877 7544 3466899999999999999976777778887532100000 0112335567
Q ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHH---cC---CCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhccccc
Q 017575 274 QIASARSSLPAVQIDHDLKVKISKVCAE---LN---VDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLR 347 (369)
Q Consensus 274 ~i~~~~~~~~~~~i~~~~~~~l~~~~~~---~~---~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~ 347 (369)
++..++.....+.+++.+.++|.++... .+ ..|+|+++.+++++++.|+++||+.|+++|+. ++..|++||+.
T Consensus 211 el~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl~ 289 (498)
T PRK13531 211 EYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDAQ 289 (498)
T ss_pred HHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCHH
Confidence 7888888888999999999999998863 22 13999999999999999999999999999999 99999999993
No 9
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-30 Score=239.13 Aligned_cols=276 Identities=22% Similarity=0.342 Sum_probs=194.3
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
.+|.+++||+.+++++.++. .+|| ++++||||||||++++.+.+++++... .+.+...... .
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA---AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~------------~E~lE~s~I~--s 238 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA---AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSI------------PEALEVSAIH--S 238 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH---hcCCcEEEecCCCCchHHhhhhhcccCCCCCh------------HHHHHHHHHh--h
Confidence 38999999999999999998 6777 999999999999999999999986531 1111111111 1
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
....+.... .-....||..++.+.. ..++.+|...+.+|.+.+|++|||||||.-.+...+.+.|++.|++++
T Consensus 239 ~~g~~~~~~--~~~~~rPFr~PHHsaS-----~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~ 311 (490)
T COG0606 239 LAGDLHEGC--PLKIHRPFRAPHHSAS-----LAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGK 311 (490)
T ss_pred hcccccccC--ccceeCCccCCCccch-----HHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCc
Confidence 111111000 0011234444444332 234456667888999999999999999999999999999999999999
Q ss_pred ceeeecceeeeecCceEEEeecCCCCC----------------------CCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 192 NTVEREGISISHPARFILIGSGNPEEG----------------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~~~----------------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
+.+.|.+..+++|.+|++++++|||++ +++.+|+|||++.+.++.++..+.....
T Consensus 312 i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~--- 388 (490)
T COG0606 312 IIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQV--- 388 (490)
T ss_pred EEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCC---
Confidence 999999999999999999999999984 3899999999999999887422211000
Q ss_pred hhhccCCChHHHhhhHHHHHHHHHHHHHHHh-----------hCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 250 RARFDKNPKEFRDSYKAEQAKLQQQIASARS-----------SLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
...+...+....+..-.+ .++.++.. ..+.+.++.+..+.+.....++++ |.|++.+++++|+
T Consensus 389 --~~~ess~~v~~rVa~AR~---~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~l-S~R~~~rILKvar 462 (490)
T COG0606 389 --PTGESSAGVRERVAKARE---AQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGL-SARAYHRILKVAR 462 (490)
T ss_pred --CCCCCcHHHHHHHHHHHH---HHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcch-hHHHHHHHHHHHh
Confidence 000000011111000000 01111111 011366677777777777778899 8999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHhHH
Q 017575 319 ALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 319 a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
++|++.|.+.|...|+.+|+.+.
T Consensus 463 TiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 463 TIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred hhhcccCcchhhHHHHHHHHhhh
Confidence 99999999999999999999876
No 10
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.97 E-value=5.7e-29 Score=240.93 Aligned_cols=277 Identities=18% Similarity=0.268 Sum_probs=194.3
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
.+|+.++|+..+++++.+++ ..|+ ++|+||||+|||++++.+++++++..+........+. .+.+...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa---~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~--------s~~g~~~ 256 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA---AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL--------SLVNAES 256 (506)
T ss_pred cCeEEEECcHHHHhhhheec---cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh--------hhhcccc
Confidence 48999999999999999998 5666 9999999999999999999999865421011111100 0000000
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
.. ..+...|+..++.... ..++-+|...+.+|.+..++++++||||++.+++..++.|++.|+++.
T Consensus 257 ~~---------~~~~~rPfr~ph~~~s-----~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~ 322 (506)
T PRK09862 257 VQ---------KQWRQRPFRSPHHSAS-----LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQ 322 (506)
T ss_pred cc---------CCcCCCCccCCCccch-----HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCc
Confidence 00 0112234444443322 233456666788999999999999999999999999999999999999
Q ss_pred ceeeecceeeeecCceEEEeecCCCC--------------------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhh
Q 017575 192 NTVEREGISISHPARFILIGSGNPEE--------------------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERA 251 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~~--------------------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~ 251 (369)
+++.+.+...+.|.+|++|+|+||++ ..++.+++|||++++.+++++..+. ....
T Consensus 323 v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l-----~~~~ 397 (506)
T PRK09862 323 IHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL-----SKTV 397 (506)
T ss_pred EEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH-----hccc
Confidence 99998898999999999999999986 1488899999999999998843211 1000
Q ss_pred hccCCChHHHhhh---HHHH----HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHc
Q 017575 252 RFDKNPKEFRDSY---KAEQ----AKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 252 ~~~~~~~~~~~~~---~~~~----~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 324 (369)
.-.+...+..... ...+ ..+..++. .....+.+.++.++.+.+...+.++++ |.|+...++++|+++|+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~-~~~l~~~~~l~~~~~~~l~~~~~~~~l-S~Ra~~rlLrvARTiADL~ 475 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLD-SPEIRQFCKLESEDARWLEETLIHLGL-SIRAWQRLLKVARTIADID 475 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccC-HHHHHHHhCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHc
Confidence 0000000111000 0000 01111111 111123467888888888888888999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHhHH
Q 017575 325 GRDKVSAEDIATVMPNC 341 (369)
Q Consensus 325 ~~~~v~~~~i~~a~~~v 341 (369)
|++.|+++|+.+|+.+.
T Consensus 476 g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 476 QSDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999976
No 11
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.96 E-value=7.5e-28 Score=234.35 Aligned_cols=276 Identities=19% Similarity=0.240 Sum_probs=187.3
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
.+|++++||..+++++.+++ ..|+ ++|+|||||||||+++.+++++++...........+.........
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~------- 258 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID------- 258 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc-------
Confidence 48999999999999999998 5555 999999999999999999999976531100111111000000000
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
. ......|+..++.... ...+.+|.....+|.+..+++++|||||++.+++.++..|++.|+++.
T Consensus 259 -~---------~~~~~~Pf~~p~~s~s-----~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~ 323 (499)
T TIGR00368 259 -R---------KQIKQRPFRSPHHSAS-----KPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGS 323 (499)
T ss_pred -c---------cccccCCccccccccc-----hhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCc
Confidence 0 0001122222221111 111224445678999999999999999999999999999999999999
Q ss_pred ceeeecceeeeecCceEEEeecCCCCC----------------------CCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 192 NTVEREGISISHPARFILIGSGNPEEG----------------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~~~----------------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
+.+.+.+....++.+|++|+++||+++ .++.+|+|||++++.+++++..+.. ..
T Consensus 324 v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~----~~ 399 (499)
T TIGR00368 324 ISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLL----ST 399 (499)
T ss_pred EEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHh----cc
Confidence 999888888999999999999999751 3899999999999999988543221 10
Q ss_pred hhhccCCChHHHhhhHHHHHHHHHHHHH-----------HHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 250 RARFDKNPKEFRDSYKAEQAKLQQQIAS-----------ARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
. -.+........+..-.+...+++.. .....+.+.++++..+.+.+.+.++++ |.|+...++++|+
T Consensus 400 ~--~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~l-S~R~~~rilrvAr 476 (499)
T TIGR00368 400 G--SGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGL-SSRATHRILKVAR 476 (499)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHH
Confidence 0 0000000111111111111111100 000001256788888889988888888 9999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHhH
Q 017575 319 ALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 319 a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
++|+|+|++.|+.+||.+|+.|
T Consensus 477 TiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 477 TIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHhhcCCCCCCHHHHHHHHhc
Confidence 9999999999999999999975
No 12
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.95 E-value=3.7e-28 Score=207.29 Aligned_cols=182 Identities=31% Similarity=0.416 Sum_probs=105.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
||++|+||+.+++++.++.. ..+|++++||||||||++|+.+..++++....-..+...+..-.....
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~---------- 68 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP---------- 68 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-----------
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC----------
Confidence 68999999999999999984 333499999999999999999999998754211111111110000000
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
. .......|+..++.+.. ..++.+|...+.+|.+.+|+.||||+||++.+++.+.+.|++.|+++.++
T Consensus 69 ----~---~~~~~~~Pfr~phhs~s-----~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~ 136 (206)
T PF01078_consen 69 ----D---EGLIRQRPFRAPHHSAS-----EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVT 136 (206)
T ss_dssp ---------EEEE---EEEE-TT-------HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEE
T ss_pred ----C---CceecCCCcccCCCCcC-----HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEE
Confidence 0 00111222222222211 23344566678899999999999999999999999999999999999999
Q ss_pred eeecceeeeecCceEEEeecCCCCC----------------------CCCHhHHhhhccceeecCCCC
Q 017575 194 VEREGISISHPARFILIGSGNPEEG----------------------ELRPQLLDRFGMHAQVGTVRD 239 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~~----------------------~l~~al~~R~~~~i~~~~~~~ 239 (369)
+.|.+.++++|.+|++|+|+||+++ +++.+++|||++++.++.++.
T Consensus 137 i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~ 204 (206)
T PF01078_consen 137 ISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSY 204 (206)
T ss_dssp EEETTEEEEEB--EEEEEEE-S----------------------------------------------
T ss_pred EEECCceEEEecccEEEEEecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999983 389999999999999887743
No 13
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=214.03 Aligned_cols=286 Identities=26% Similarity=0.326 Sum_probs=216.9
Q ss_pred cccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
.++|++.++..+..++. ..++++|.||||||||++++.++..+ +.++..++++++..++++.+.+......
T Consensus 25 ~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l-------~~~~~~i~~t~~l~p~d~~G~~~~~~~~ 95 (329)
T COG0714 25 VVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARAL-------GLPFVRIQCTPDLLPSDLLGTYAYAALL 95 (329)
T ss_pred eeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHh-------CCCeEEEecCCCCCHHHhcCchhHhhhh
Confidence 37789999888888886 67779999999999999999999999 5778888888888888887754322110
Q ss_pred hhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeee
Q 017575 117 SITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVER 196 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~ 196 (369)
. ..+...+.+|++..+..+++++||+|+.++.+++.|++.|+++++++.
T Consensus 96 ~------------------------------~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~- 144 (329)
T COG0714 96 L------------------------------EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP- 144 (329)
T ss_pred c------------------------------cCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEEC-
Confidence 0 034456778888765446999999999999999999999999999887
Q ss_pred ccee-eeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHH
Q 017575 197 EGIS-ISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKL 271 (369)
Q Consensus 197 ~~~~-~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 271 (369)
+.+ ...+..|++++|+||.++ .+++|++|||.+.+.+++|...+....+..+........ ......+...
T Consensus 145 -~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~----~~~~v~~~~~ 219 (329)
T COG0714 145 -GLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELD----LESLVKPVLS 219 (329)
T ss_pred -CcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccc----cchhhhhhhC
Confidence 556 888899999999997553 489999999988899999955554444444332211100 1112222333
Q ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC-------CCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 272 QQQIASARSSLPAVQIDHDLKVKISKVCAELNVD-------GLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 272 ~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~-------s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
..+..+......++.+++++..++..+....... |+|+...++..+++.|.+.++..+.++++......++.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 220 DEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 3344444444557899999999988877654432 789999999999999999999999999999999999999
Q ss_pred cccCCCC---CCCChhHHHHHHHHhh
Q 017575 345 RLRKDPL---ESIDSGLLIIEKFYEV 367 (369)
Q Consensus 345 r~~~~~~---~~~~~~~~~~~~~~~~ 367 (369)
|...... .+...+.++++++.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (329)
T COG0714 300 RLILELEAKLSGLSVLDIVREILERV 325 (329)
T ss_pred hhhccHHHHHhcCCHHHHHHHHHHhc
Confidence 9977554 3456777777776653
No 14
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.94 E-value=1.1e-25 Score=222.15 Aligned_cols=267 Identities=21% Similarity=0.286 Sum_probs=196.8
Q ss_pred CccccChHHHHHHhhhhhccCC----------CC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPK----------IG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~----------~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
...++|++.++.++.+.++... +| |+||+|+||+|||++++.++...+...+..+...... .+
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~-----~l 276 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAV-----GL 276 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcC-----Cc
Confidence 3458899999999999986321 11 6999999999999999999998863321111000000 00
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
... .. ....+|...+.+|.+..+++++++|||++.+++..+..
T Consensus 277 ~~~------------------------------~~-------~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~ 319 (509)
T smart00350 277 TAA------------------------------VT-------RDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTA 319 (509)
T ss_pred ccc------------------------------ce-------EccCcceEEecCccEEecCCCEEEEechhhCCHHHHHH
Confidence 000 00 00013445566888999999999999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEER 250 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~ 250 (369)
|+++|+++.+++.+.|.+.+.+.++.+|+|+||..+ .++++++|||++.+.+..+.+.+....|+.+.
T Consensus 320 L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 320 IHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred HHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHH
Confidence 999999999999888999999999999999999865 59999999998766665444777777887763
Q ss_pred hhccC--CChHHH-hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCC------------CCCchhHHHHH
Q 017575 251 ARFDK--NPKEFR-DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNV------------DGLRGDIVSNR 315 (369)
Q Consensus 251 ~~~~~--~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~------------~s~R~~~~ll~ 315 (369)
...+. .++... .....+.+.+.++|..++.... ..+++++.++|.+++..++. -|+|.+..+++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~-P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliR 478 (509)
T smart00350 400 VDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIK-PKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIR 478 (509)
T ss_pred HHhhcccCccccccccccCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHH
Confidence 32221 110000 0112356778888888886332 35899999999998876542 17899999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 316 AAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
+|+|+|++++++.|+++|+..|+..+...
T Consensus 479 la~A~A~l~~r~~V~~~Dv~~ai~l~~~s 507 (509)
T smart00350 479 LSEAHAKMRLSDVVEEADVEEAIRLLRES 507 (509)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987643
No 15
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.4e-22 Score=177.29 Aligned_cols=221 Identities=20% Similarity=0.264 Sum_probs=163.6
Q ss_pred CCCCCccccChHHHHHHhhhhhc-----cCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVI-----DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~-----~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++..|++.+||+++++++.+.+. .....|+||+||||.||||||+.+|..+. .++...++..-.-+.+
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-------vn~k~tsGp~leK~gD 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG-------VNLKITSGPALEKPGD 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-------CCeEecccccccChhh
Confidence 34589999999999999887763 22344799999999999999999999994 3332211111001111
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchh-hhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL-AKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
+. +++ ....++|+|+||+|++++.+.+.|+
T Consensus 94 la-------------------------------------------------aiLt~Le~~DVLFIDEIHrl~~~vEE~LY 124 (332)
T COG2255 94 LA-------------------------------------------------AILTNLEEGDVLFIDEIHRLSPAVEEVLY 124 (332)
T ss_pred HH-------------------------------------------------HHHhcCCcCCeEEEehhhhcChhHHHHhh
Confidence 11 111 1124789999999999999999999
Q ss_pred HHHhcCCcee--eec--ceeeeec-CceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChH
Q 017575 185 DSAASGWNTV--ERE--GISISHP-ARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKE 259 (369)
Q Consensus 185 ~~l~~~~~~~--~~~--~~~~~~~-~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~ 259 (369)
.+|++..+.+ ++. ..++..+ .+|.+|+++. ..+.++.+|.|||.+..++.+. +.+....|+.+..
T Consensus 125 paMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT-r~G~lt~PLrdRFGi~~rlefY-~~~eL~~Iv~r~a-------- 194 (332)
T COG2255 125 PAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT-RAGMLTNPLRDRFGIIQRLEFY-TVEELEEIVKRSA-------- 194 (332)
T ss_pred hhhhheeEEEEEccCCccceEeccCCCeeEeeecc-ccccccchhHHhcCCeeeeecC-CHHHHHHHHHHHH--------
Confidence 9999977644 322 3346666 4799999988 4567999999999998999888 4555666665432
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 260 FRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
..-++.++++....|+..++. ++|-+.++++..+..|..++...|+.+-..+++.
T Consensus 195 ---------------------~~l~i~i~~~~a~eIA~rSRG----TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~ 249 (332)
T COG2255 195 ---------------------KILGIEIDEEAALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALK 249 (332)
T ss_pred ---------------------HHhCCCCChHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 222578888888777777763 7899999999999999999999999988888877
Q ss_pred HHh
Q 017575 340 NCL 342 (369)
Q Consensus 340 ~vl 342 (369)
...
T Consensus 250 ~L~ 252 (332)
T COG2255 250 MLD 252 (332)
T ss_pred HhC
Confidence 543
No 16
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.90 E-value=1.9e-22 Score=203.95 Aligned_cols=267 Identities=20% Similarity=0.190 Sum_probs=193.8
Q ss_pred CccccChHHHHHHhhhhhccCC-------------------CC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPK-------------------IG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN 93 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~-------------------~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 93 (369)
...|+|.+.+++++.+.++... +| ||||+|+||||||++|+.++...+...+..+.++.
T Consensus 449 aP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred CCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 3468999999999999997432 12 49999999999999999999987643322222222
Q ss_pred CCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCC
Q 017575 94 SDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVN 173 (369)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~ 173 (369)
....... .. ......|.+...+|.+..|++|+++|||++
T Consensus 529 ~vgLTa~----------------------------------------~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEid 567 (915)
T PTZ00111 529 SVGLTAS----------------------------------------IK-FNESDNGRAMIQPGAVVLANGGVCCIDELD 567 (915)
T ss_pred cccccch----------------------------------------hh-hcccccCcccccCCcEEEcCCCeEEecchh
Confidence 1111000 00 000012445566899999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHH
Q 017575 174 LLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
.+++..|..|+++|+++.+++.+.|...+.+..+.+|||+||..+ .++++|++||++.+.+-...+.+
T Consensus 568 kms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 568 KCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred hCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 999999999999999999999988999999999999999999643 38899999997765555444666
Q ss_pred HHHHHHHHhhhcc----C----CChH-------------HHh----hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHH
Q 017575 242 LRVKIVEERARFD----K----NPKE-------------FRD----SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKIS 296 (369)
Q Consensus 242 ~~~~il~~~~~~~----~----~~~~-------------~~~----~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~ 296 (369)
....|..+-...+ . ..+. ... ..+....++.++|.-++.... ..+++++.+.|.
T Consensus 648 ~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA~~~i~ 726 (915)
T PTZ00111 648 TDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEAKKVIT 726 (915)
T ss_pred HHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHH
Confidence 6666655422110 0 0000 000 001246789999999886443 478999999988
Q ss_pred HHHHHcCC---------------------------------CCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 297 KVCAELNV---------------------------------DGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 297 ~~~~~~~~---------------------------------~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
+++.+++- -++|.+..++++|.|.|.++-++.|+.+|+..|++.+-.
T Consensus 727 ~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~ 806 (915)
T PTZ00111 727 REYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKS 806 (915)
T ss_pred HHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHH
Confidence 76654431 168999999999999999999999999999999987653
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=1.1e-23 Score=181.01 Aligned_cols=202 Identities=24% Similarity=0.346 Sum_probs=126.8
Q ss_pred CCCCCccccChHHHHHHhhhhhcc-----CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVID-----PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~-----~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
.+..|++++||++++..+...+.. ....|++|+||||+||||||+.||..+... +....
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-------~~~~s--------- 82 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-------FKITS--------- 82 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEE---------
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-------eEecc---------
Confidence 344899999999998876654310 112359999999999999999999999522 11000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchh-hhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL-AKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
+ +. +....++. +.+ ...++.|+|+||+|++++.+|+.|+
T Consensus 83 -------g---------------~~------i~k~~dl~------------~il~~l~~~~ILFIDEIHRlnk~~qe~Ll 122 (233)
T PF05496_consen 83 -------G---------------PA------IEKAGDLA------------AILTNLKEGDILFIDEIHRLNKAQQEILL 122 (233)
T ss_dssp -------C---------------CC--------SCHHHH------------HHHHT--TT-EEEECTCCC--HHHHHHHH
T ss_pred -------c---------------hh------hhhHHHHH------------HHHHhcCCCcEEEEechhhccHHHHHHHH
Confidence 0 00 00000000 001 1124679999999999999999999
Q ss_pred HHHhcCCceee--ec--ceeeeec-CceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChH
Q 017575 185 DSAASGWNTVE--RE--GISISHP-ARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKE 259 (369)
Q Consensus 185 ~~l~~~~~~~~--~~--~~~~~~~-~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~ 259 (369)
..|+++.+.+. .. ..++..+ .+|.+|++++- .+.++.+|+|||.+..++.+. ..+...+|+.+.
T Consensus 123 pamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr-~g~ls~pLrdRFgi~~~l~~Y-~~~el~~Iv~r~--------- 191 (233)
T PF05496_consen 123 PAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR-AGLLSSPLRDRFGIVLRLEFY-SEEELAKIVKRS--------- 191 (233)
T ss_dssp HHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS-GCCTSHCCCTTSSEEEE-----THHHHHHHHHHC---------
T ss_pred HHhccCeEEEEeccccccceeeccCCCceEeeeecc-ccccchhHHhhcceecchhcC-CHHHHHHHHHHH---------
Confidence 99999987542 21 2345555 46999999984 467999999999997788877 556666665533
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 017575 260 FRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL 323 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l 323 (369)
...-.+.+++++...|+..++. ++|-+.++++.++..|..
T Consensus 192 --------------------a~~l~i~i~~~~~~~Ia~rsrG----tPRiAnrll~rvrD~a~v 231 (233)
T PF05496_consen 192 --------------------ARILNIEIDEDAAEEIARRSRG----TPRIANRLLRRVRDFAQV 231 (233)
T ss_dssp --------------------CHCTT-EE-HHHHHHHHHCTTT----SHHHHHHHHHHHCCCCCC
T ss_pred --------------------HHHhCCCcCHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHH
Confidence 2344789999988888777763 789999999998766543
No 18
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.89 E-value=5.6e-22 Score=180.01 Aligned_cols=241 Identities=18% Similarity=0.114 Sum_probs=155.4
Q ss_pred HHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhcc
Q 017575 44 MKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKI 123 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (369)
+.+.+...+. .+.+++|.||||||||++|+.++..+ +.++..+..+.+...+++.+.+......
T Consensus 10 l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l-------g~~~~~i~~~~~~~~~dllg~~~~~~~~------- 73 (262)
T TIGR02640 10 VTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR-------DRPVMLINGDAELTTSDLVGSYAGYTRK------- 73 (262)
T ss_pred HHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh-------CCCEEEEeCCccCCHHHHhhhhcccchh-------
Confidence 4444444442 33459999999999999999999876 3444444444444455555432110000
Q ss_pred ccccCCCCCchHhhhcccchhHHhhhcccccccchhhh--cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeec---c
Q 017575 124 NMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK--ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVERE---G 198 (369)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~---~ 198 (369)
.............. ......+.+|++.. .+++++++||++++++++++.|+++|+++.+.+... +
T Consensus 74 --------~~~~~~~~~~~~~~--~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~ 143 (262)
T TIGR02640 74 --------KVHDQFIHNVVKLE--DIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTS 143 (262)
T ss_pred --------hHHHHHHHHhhhhh--cccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCC
Confidence 00000000000000 01112455676654 378899999999999999999999999988777532 2
Q ss_pred eeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHH
Q 017575 199 ISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQ 274 (369)
Q Consensus 199 ~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (369)
..+..+.+|.+|+|+||..+ .++++|++||. .+.+++| +.+....|+..+.
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~-~i~i~~P-~~~~e~~Il~~~~----------------------- 198 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLI-TIFMDYP-DIDTETAILRAKT----------------------- 198 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHhhcE-EEECCCC-CHHHHHHHHHHhh-----------------------
Confidence 34556678999999998642 36899999996 4999999 5566667766431
Q ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHcC---CCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 275 IASARSSLPAVQIDHDLKVKISKVCAELN---VDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 275 i~~~~~~~~~~~i~~~~~~~l~~~~~~~~---~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
.++++..+.+..++..++ ..-.-+...++.+++..+.++.+..++++|+.+++..|+.||+
T Consensus 199 -----------~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (262)
T TIGR02640 199 -----------DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDIPVDVDDEDFVDLCIDILASRV 262 (262)
T ss_pred -----------CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHhccCC
Confidence 234555555555554333 1001124455777777777788999999999999999999986
No 19
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.89 E-value=9.3e-23 Score=190.66 Aligned_cols=265 Identities=25% Similarity=0.314 Sum_probs=179.0
Q ss_pred CccccChHHHHHHhhhhhccCC----------CC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPK----------IG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~----------~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
...|+|.+.++.++.+.++... +| |+||+|.||+|||.|++.++.+.+..-+..+........+....
T Consensus 23 aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 23 APSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp SSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEEC
T ss_pred CCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceec
Confidence 3468899999999999997432 12 49999999999999999998888755433222221111111000
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
. . -.++++.+..|.+..+++||++|||++.++......
T Consensus 103 ~----------------------------------------d--~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~ 140 (331)
T PF00493_consen 103 R----------------------------------------D--PVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDA 140 (331)
T ss_dssp C----------------------------------------C--GGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHH
T ss_pred c----------------------------------------c--cccceeEEeCCchhcccCceeeecccccccchHHHH
Confidence 0 0 023446677899999999999999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEER 250 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~ 250 (369)
|+++|+++.+++.+.|...+.+..+.+++++||..+ .++++|++||++.+.+....+.+....+...-
T Consensus 141 l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~i 220 (331)
T PF00493_consen 141 LHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHI 220 (331)
T ss_dssp HHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHH
T ss_pred HHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEE
Confidence 999999999999999999999999999999998763 27899999999977776665666666666643
Q ss_pred hhccCCCh----HHHhh--hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCC----------CCCchhHHHH
Q 017575 251 ARFDKNPK----EFRDS--YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNV----------DGLRGDIVSN 314 (369)
Q Consensus 251 ~~~~~~~~----~~~~~--~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~----------~s~R~~~~ll 314 (369)
...+.... ..... ..-...+++++|..++.... ..+++++.+.|..++..++- -++|.+..++
T Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~-P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLI 299 (331)
T PF00493_consen 221 LDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIH-PVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLI 299 (331)
T ss_dssp HTTT---S--------SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHH
T ss_pred EeccccccccccccccccCCccCHHHHHHHHHHHHhhcc-cccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHH
Confidence 22221110 00100 13345667888888885553 48999999999988854321 1789999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 315 RAAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 315 ~~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
++|.++|.++.++.|+.+|+..|+..+.
T Consensus 300 RLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 300 RLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 9999999999999999999999998653
No 20
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.88 E-value=1.3e-21 Score=186.99 Aligned_cols=269 Identities=19% Similarity=0.247 Sum_probs=197.8
Q ss_pred CCccccChHHHHHHhhhhhccC----------CCC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDP----------KIG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA 101 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~----------~~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 101 (369)
-+..|+|++.++..+.+.++.. -+| |++|+|.||+|||-++++.++.+|..-+..|..-.....+...
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 3678999999999999998631 133 3999999999999999999999986544333222111110000
Q ss_pred hhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 102 MGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
.. .-.+|......|.+..|++||+.|||+++++...+.
T Consensus 423 vk------------------------------------------D~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqv 460 (764)
T KOG0480|consen 423 VK------------------------------------------DEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQV 460 (764)
T ss_pred Ee------------------------------------------cCCCCceeeecCcEEEccCceEEechhcccChHhHH
Confidence 00 002444556678899999999999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
+|++.|++..+.+.+.|...+.++...+||++||..+ .+++++++||++.+.+-.-.++.....|..+
T Consensus 461 AihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~h 540 (764)
T KOG0480|consen 461 AIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARH 540 (764)
T ss_pred HHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999764 2899999999986664433355544444443
Q ss_pred hhhccCCChHH-HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC------------CCchhHHHHHH
Q 017575 250 RARFDKNPKEF-RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD------------GLRGDIVSNRA 316 (369)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~------------s~R~~~~ll~~ 316 (369)
--..+..-.+. ...-.-..+.+.++|.-+++.. ..++.++.+.|.+.+.+++.. +.|.+.+++++
T Consensus 541 Ild~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~--P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRL 618 (764)
T KOG0480|consen 541 ILDLHRGIDDATERVCVYTLEQVRKYIRYARNFK--PKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRL 618 (764)
T ss_pred HHHHhccccccccccccccHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHH
Confidence 22222211111 1111224456788888888444 478899999988877654321 67999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
+.|+|.++.++.|+++|+.+|++..-.+-+
T Consensus 619 sEA~Ar~~~~devt~~~v~ea~eLlk~Siv 648 (764)
T KOG0480|consen 619 SEARARVECRDEVTKEDVEEAVELLKKSIV 648 (764)
T ss_pred HHHHHhhhhhhhccHHHHHHHHHHHHhhhe
Confidence 999999999999999999999997666544
No 21
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.88 E-value=1.8e-21 Score=177.95 Aligned_cols=240 Identities=19% Similarity=0.181 Sum_probs=162.9
Q ss_pred hHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhh
Q 017575 41 QEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITF 120 (369)
Q Consensus 41 ~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
..+....+...+. ..++++|.||||||||++++.++..+. .++..+..+.+..+.++.+.....
T Consensus 50 ~~~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l~-------~~~~rV~~~~~l~~~DliG~~~~~------- 113 (327)
T TIGR01650 50 DKATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARLN-------WPCVRVNLDSHVSRIDLVGKDAIV------- 113 (327)
T ss_pred CHHHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHHC-------CCeEEEEecCCCChhhcCCCceee-------
Confidence 3345566666664 456699999999999999999999994 555555555555555554421100
Q ss_pred hccccccCCCCCchHhhhcccchhHHhhhc--ccccccchhhhc--CCCeEEEeCCCCCCHHHHHHHHHHHh-cCCceee
Q 017575 121 SKINMVDLPLGATEDRVCGTIDIEKALTEG--VKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDVLLDSAA-SGWNTVE 195 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~a--~~~vl~lDE~~~l~~~~~~~L~~~l~-~~~~~~~ 195 (369)
+..+ ...+..|++..+ ++.++++||+|++++++++.|..+|+ ++.+++.
T Consensus 114 --------------------------l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~ 167 (327)
T TIGR01650 114 --------------------------LKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLL 167 (327)
T ss_pred --------------------------ccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEEC
Confidence 0111 135667777554 67889999999999999999999999 5678776
Q ss_pred ecceeeeecCceEEEeecCCCC-------C----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 196 REGISISHPARFILIGSGNPEE-------G----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~li~t~n~~~-------~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
..+..+..+..|++|+|.||.. + .+++|++|||.+.+.++|| ..+.+..|+..+....
T Consensus 168 ~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp-~~e~E~~Il~~~~~~~---------- 236 (327)
T TIGR01650 168 DQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL-EHDNEAAIVLAKAKGF---------- 236 (327)
T ss_pred CCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC-CHHHHHHHHHhhccCC----------
Confidence 5566666666899999999854 1 2789999999887889999 5666777776442100
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-----------cCCCCCchhHHHHHHHHHHHHHcCCCCCCHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE-----------LNVDGLRGDIVSNRAAKALAALKGRDKVSAED 333 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~-----------~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~ 333 (369)
. -..++.+.+++.+++.. .++ |+|..+.+.+.+. .+. .+
T Consensus 237 ------------------~-~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~-SpR~li~w~~~~~---~f~-------~~ 286 (327)
T TIGR01650 237 ------------------D-DTEGKDIINAMVRVADMTRNAFINGDISTVM-SPRTVITWAENAE---IFD-------HD 286 (327)
T ss_pred ------------------C-ccchHHHHHHHHHHHHHHHhhhccCCccccc-cHHHHHHHHHHHH---hhC-------cc
Confidence 0 00122333333333321 233 7886655554433 332 36
Q ss_pred HHHHHhHHhcccccCCCCCCCChhHHHHHHHHhhhC
Q 017575 334 IATVMPNCLRHRLRKDPLESIDSGLLIIEKFYEVFS 369 (369)
Q Consensus 334 i~~a~~~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
+..|++..+..|. ......++.+++++.||
T Consensus 287 ~~~a~~~~~~n~~------~~~er~~~~e~~q~~f~ 316 (327)
T TIGR01650 287 IALAFRLTFLNKC------DELERPTVAEFFQRAFG 316 (327)
T ss_pred HHHHHHHHHHhcC------CHHHHHHHHHHHHHHcC
Confidence 8899999999988 44456689999999986
No 22
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.88 E-value=6.9e-22 Score=184.22 Aligned_cols=273 Identities=21% Similarity=0.254 Sum_probs=206.8
Q ss_pred CccccChHHHHHHhhhhhccC---C-------CC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDP---K-------IG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~---~-------~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
-.+|+|.+.+++++++.++.. . +| +|+|+|.||+.||.|++++..+.+...+..|.--+-...+...+
T Consensus 341 APEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVm 420 (721)
T KOG0482|consen 341 APEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVM 420 (721)
T ss_pred chhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhh
Confidence 347999999999999998732 1 23 39999999999999999999999755432222111111111100
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.. . ..|+..+..|.+..|++||+.|||+++++..-..+
T Consensus 421 kD-------------------------------p-----------vTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA 458 (721)
T KOG0482|consen 421 KD-------------------------------P-----------VTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA 458 (721)
T ss_pred cC-------------------------------C-----------CCCeeEeccceEEEccCceEeehhhhhhhhhhhHH
Confidence 00 0 23445566778888999999999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC------------CCHhHHhhhccceeecCCCCHHHHHHHHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE------------LRPQLLDRFGMHAQVGTVRDAELRVKIVEER 250 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~------------l~~al~~R~~~~i~~~~~~~~~~~~~il~~~ 250 (369)
+.++|++..+.+.+.|...+.++...++++.||..+. +++||++||++..-+-.-++++....+.++-
T Consensus 459 IHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 459 IHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred HHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHh
Confidence 9999999999999999999999999999999997642 8999999999854444444677777887775
Q ss_pred hhccCCChHH-HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcC----------CCCCchhHHHHHHHHH
Q 017575 251 ARFDKNPKEF-RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELN----------VDGLRGDIVSNRAAKA 319 (369)
Q Consensus 251 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~----------~~s~R~~~~ll~~a~a 319 (369)
...+...++. ..+-+.++..++.+|..++...+ .++++..++|...+.+++ ..|+|.+..+++++.|
T Consensus 539 TyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P--~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~A 616 (721)
T KOG0482|consen 539 TYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNP--VVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTA 616 (721)
T ss_pred HhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHH
Confidence 5544322222 22233567788888888876544 788999999887554332 3389999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhcccccCCCC
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRHRLRKDPL 351 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~ 351 (369)
+|.|+-++.|..+|+.+|+++.--++..+.++
T Consensus 617 larLRls~~V~~~DV~EALRLme~sK~sL~~~ 648 (721)
T KOG0482|consen 617 LARLRLSDSVEEDDVNEALRLMEMSKDSLYQD 648 (721)
T ss_pred HHHhhhccccchhhHHHHHHHHHhhhcccccc
Confidence 99999999999999999999998888887655
No 23
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.87 E-value=6.1e-23 Score=161.01 Aligned_cols=126 Identities=28% Similarity=0.410 Sum_probs=88.1
Q ss_pred eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhh
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVC 138 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (369)
|+||.|+||+|||++++++++.+ +..|.+++.+++.+++++.+.. ++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-------~~~f~RIq~tpdllPsDi~G~~--------------v~~~---------- 49 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-------GLSFKRIQFTPDLLPSDILGFP--------------VYDQ---------- 49 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-------T--EEEEE--TT--HHHHHEEE--------------EEET----------
T ss_pred CEeeECCCccHHHHHHHHHHHHc-------CCceeEEEecCCCCcccceeee--------------eecc----------
Confidence 58999999999999999999999 5677778888899999888741 1110
Q ss_pred cccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC
Q 017575 139 GTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG 218 (369)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~ 218 (369)
..+...+.+|++. .+|+++||+|+.++.+|++|+++|+++++++. |.++..|.+|++|||.||.+.
T Consensus 50 ---------~~~~f~~~~GPif---~~ill~DEiNrappktQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e~ 115 (131)
T PF07726_consen 50 ---------ETGEFEFRPGPIF---TNILLADEINRAPPKTQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVEQ 115 (131)
T ss_dssp ---------TTTEEEEEE-TT----SSEEEEETGGGS-HHHHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT--
T ss_pred ---------CCCeeEeecChhh---hceeeecccccCCHHHHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCcccc
Confidence 1244556788887 35999999999999999999999999999887 999999999999999998663
Q ss_pred ----CCCHhHHhhhc
Q 017575 219 ----ELRPQLLDRFG 229 (369)
Q Consensus 219 ----~l~~al~~R~~ 229 (369)
.++++++|||.
T Consensus 116 ~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 116 EGTYPLPEAQLDRFM 130 (131)
T ss_dssp S------HHHHTTSS
T ss_pred CceecCCHHHhcccc
Confidence 49999999995
No 24
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.9e-21 Score=190.18 Aligned_cols=268 Identities=21% Similarity=0.268 Sum_probs=197.6
Q ss_pred CccccChHHHHHHhhhhhccCC----------CC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPK----------IG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~----------~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
...|+|.+.+++++.+.++... +| |+||+|.||+|||.|+|.+++.++..-+..+..-...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~------- 357 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAA------- 357 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccccc-------
Confidence 4568999999999999997321 22 4999999999999999999999975432211111000
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.++....... ..|++.+..|-+..|++||+.|||++.++...+.+
T Consensus 358 ---------------------------------GLTAav~rd~--~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~a 402 (682)
T COG1241 358 ---------------------------------GLTAAVVRDK--VTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVA 402 (682)
T ss_pred ---------------------------------CceeEEEEcc--CCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHH
Confidence 1110000000 12345566788888999999999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEER 250 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~ 250 (369)
|+++|++..+++.+.|.+.+.++.+.++|++||..+ .++++|++||++.+.+..-.+++....+..+-
T Consensus 403 ihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hi 482 (682)
T COG1241 403 IHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHI 482 (682)
T ss_pred HHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHH
Confidence 999999999999999999999999999999999764 28899999999977766554555555555542
Q ss_pred hhccC---CChH----HHhhhHH-HHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCC------------CCCchh
Q 017575 251 ARFDK---NPKE----FRDSYKA-EQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNV------------DGLRGD 310 (369)
Q Consensus 251 ~~~~~---~~~~----~~~~~~~-~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~------------~s~R~~ 310 (369)
...+. +... -..+..+ ..++++++|.-++.... ..+++++.+.|.+++.+++- -++|.+
T Consensus 483 l~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqL 561 (682)
T COG1241 483 LDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVT-PVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQL 561 (682)
T ss_pred HHHHhccccccccccccccccccCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHHHHhhhccccccccCcccccHHHH
Confidence 22111 0000 0001111 46778999999887532 58999999999998875542 167999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhccc
Q 017575 311 IVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 311 ~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r 345 (369)
..++++|.|+|.++-++.|+++|+..|++.+....
T Consensus 562 EsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l 596 (682)
T COG1241 562 ESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSL 596 (682)
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877543
No 25
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.87 E-value=1.3e-20 Score=186.58 Aligned_cols=254 Identities=24% Similarity=0.286 Sum_probs=168.1
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcce--eec-CCCCCCCC-----
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK--VVV-GDPYNSDP----- 96 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~--~~~-~~~~~~~~----- 96 (369)
+.++.+| ..|++++|++..++.+..++..+...+++|+||||||||++|++++....... .+. ..+|..+.
T Consensus 55 ~~~~~rp-~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 55 LSEKTRP-KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred HHHhhCc-CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 4455555 48999999999988888777544445699999999999999999987643211 000 11111110
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.+...+...+++... .+.....+.+. ..+.....+|.+.+++++++||||++.++
T Consensus 134 ~~~~~~~~~li~~~~--------------------~p~~~~~~~~g-----~~g~~~~~~G~l~~a~gG~L~IdEI~~L~ 188 (531)
T TIGR02902 134 FDERGIADPLIGSVH--------------------DPIYQGAGPLG-----IAGIPQPKPGAVTRAHGGVLFIDEIGELH 188 (531)
T ss_pred CCccccchhhcCCcc--------------------cchhccccccc-----cCCcccccCchhhccCCcEEEEechhhCC
Confidence 000001111111000 00000000000 12223455788888999999999999999
Q ss_pred HHHHHHHHHHHhcCCceeeec-----ce----------eeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHH
Q 017575 177 DHLVDVLLDSAASGWNTVERE-----GI----------SISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 177 ~~~~~~L~~~l~~~~~~~~~~-----~~----------~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
+..|+.|+++|+++.+.+... +. ....+.++.+|++++..+..+++++++||.. +.+++++ .+
T Consensus 189 ~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~-I~f~pL~-~e 266 (531)
T TIGR02902 189 PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFRPLL-DE 266 (531)
T ss_pred HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhe-eeCCCCC-HH
Confidence 999999999999887654310 00 1234667888887776667799999999965 7787774 45
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
....|++.. .+ ...+.+++++++.|..++. +.|.+.++++.|..+|
T Consensus 267 ei~~Il~~~-------------------------a~----k~~i~is~~al~~I~~y~~-----n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 267 EIKEIAKNA-------------------------AE----KIGINLEKHALELIVKYAS-----NGREAVNIVQLAAGIA 312 (531)
T ss_pred HHHHHHHHH-------------------------HH----HcCCCcCHHHHHHHHHhhh-----hHHHHHHHHHHHHHHH
Confidence 555554421 11 1247899999999888775 3599999999999999
Q ss_pred HHcCCCCCCHHHHHHHHhH
Q 017575 322 ALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 322 ~l~~~~~v~~~~i~~a~~~ 340 (369)
..+++..|+.+|+.+++..
T Consensus 313 ~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 313 LGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred hhCCCcEEcHHHHHHHhCC
Confidence 9988889999999999864
No 26
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.82 E-value=7.5e-19 Score=169.49 Aligned_cols=263 Identities=21% Similarity=0.269 Sum_probs=188.1
Q ss_pred CccccChHHHHHHhhhhhccCC----------CC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPK----------IG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~----------~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
-..|+|.+.+++++.+.++... +| ||||+|.||+|||-+++.++.+.+...+..|.--...
T Consensus 428 APsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSav------- 500 (804)
T KOG0478|consen 428 APSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAV------- 500 (804)
T ss_pred chhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchh-------
Confidence 3468999999999999997321 12 3999999999999999999999975543222211110
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.... ...-+.++..+..|.+..+++|++.|||++++....++.
T Consensus 501 ---------------------------------GLTayV--trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSv 545 (804)
T KOG0478|consen 501 ---------------------------------GLTAYV--TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSV 545 (804)
T ss_pred ---------------------------------cceeeE--EecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHH
Confidence 000000 011134455666788888999999999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC------------CCHhHHhhhccceeecCCCCHHHHHHHHHH-
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE------------LRPQLLDRFGMHAQVGTVRDAELRVKIVEE- 249 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~------------l~~al~~R~~~~i~~~~~~~~~~~~~il~~- 249 (369)
|+++|++..+.+.+.|...++++...++|+.||...+ +++.|++||++.+-+-...++-....+..+
T Consensus 546 LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 546 LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 9999999999999999999999999999999987642 899999999986665554455545566655
Q ss_pred hhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-------C-C-CCCchhHHHHHHHHHH
Q 017575 250 RARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL-------N-V-DGLRGDIVSNRAAKAL 320 (369)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-------~-~-~s~R~~~~ll~~a~a~ 320 (369)
...+.++.+. .....-....+..++..++.-.. ..+++++...+......+ | + ..+|...++++++.++
T Consensus 626 vsLy~e~~~~-~~~~~~d~~~lr~yi~yArk~i~-p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEah 703 (804)
T KOG0478|consen 626 VALYPETGEK-QGSEAIDMNLLRDYIRYARKNIH-PALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAH 703 (804)
T ss_pred HHhccccccc-chhHHHhHHHHHHHHHHHhccCC-ccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHH
Confidence 3344443311 11112233345666666665343 466777777766655422 1 1 2568899999999999
Q ss_pred HHHcCCCCCCHHHHHHHHhHH
Q 017575 321 AALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 321 A~l~~~~~v~~~~i~~a~~~v 341 (369)
|....+..+.+.||++|+.+.
T Consensus 704 ak~r~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 704 AKMRLSNRVEEIDVEEAVRLL 724 (804)
T ss_pred HHhhcccccchhhHHHHHHHH
Confidence 999999999999999998763
No 27
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-19 Score=171.37 Aligned_cols=238 Identities=23% Similarity=0.247 Sum_probs=167.3
Q ss_pred CCCCCccccChHHH-HHHhhhhhccCCCC-eeEEecCCCCChhHHHHHHHhccCcceeecCCCC---CCCCCCcchhhhh
Q 017575 31 PVYPFTAIVGQEEM-KLCLLLNVIDPKIG-GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPY---NSDPEDPEAMGIE 105 (369)
Q Consensus 31 ~~~~~~~i~G~~~~-~~~l~~~l~~~~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~---~~~~~~~~~~~~~ 105 (369)
..++|++|+|.... .+.+..+-...... .|||.|.+||||..+|++|....+.. ..+| ||-.....+++++
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~----~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA----NGPFIAINCAAIPETLLESE 315 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc----CCCeEEEecccCCHHHHHHH
Confidence 44689999998776 33333332211222 29999999999999999999998743 2333 3444444555555
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
+++. . ..++.|....-++|++..|++|.+||||++.+|.+.|..|+.
T Consensus 316 LFGy-------------------------------e--~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLR 362 (560)
T COG3829 316 LFGY-------------------------------E--KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLR 362 (560)
T ss_pred HhCc-------------------------------C--CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHH
Confidence 5543 1 122234444446899999999999999999999999999999
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKE 259 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~ 259 (369)
+|+++.+. +.|.+...+.++.+|+|+|... +.+.+.|..|+.+ +.+.-|+.++..++|....
T Consensus 363 VLQEkei~--rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV-~~i~iPPLReR~eDI~~L~--------- 430 (560)
T COG3829 363 VLQEKEIE--RVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNV-IPITIPPLRERKEDIPLLA--------- 430 (560)
T ss_pred HHhhceEE--ecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeece-eeecCCCcccCcchHHHHH---------
Confidence 99998764 3488888889999999999543 4589999999987 7777666677666664432
Q ss_pred HHhhhHHHHHHHHHHHHH--HHhhCCCcc-cCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 260 FRDSYKAEQAKLQQQIAS--ARSSLPAVQ-IDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~--~~~~~~~~~-i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
.++.. .+...+.+. +++++...|..+..-.++ |.+.+++..+-- .......|+.+|+-
T Consensus 431 -------------~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNV---RELeNviER~v~--~~~~~~~I~~~~lp 491 (560)
T COG3829 431 -------------EYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNV---RELENVIERAVN--LVESDGLIDADDLP 491 (560)
T ss_pred -------------HHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchH---HHHHHHHHHHHh--ccCCcceeehhhcc
Confidence 22222 233344566 999999998888875444 999998887654 33334457777665
No 28
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.7e-18 Score=151.82 Aligned_cols=222 Identities=20% Similarity=0.304 Sum_probs=145.7
Q ss_pred CCCCCCccccChHHHHH----HhhhhhccC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKL----CLLLNVIDP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~----~l~~~l~~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...+.+|=|-++.++ .+.+.+..| ...+|||+||||||||.|||++|..... .|..+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEEec
Confidence 34556777777554444 444444311 2345999999999999999999988742 111110
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---CCCeEEEeCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVN 173 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~~~vl~lDE~~ 173 (369)
-+++ ..+. -|....+..-.+..| .|+|+||||++
T Consensus 218 ------gSEl---------------------------VqKY----------iGEGaRlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 218 ------GSEL---------------------------VQKY----------IGEGARLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred ------cHHH---------------------------HHHH----------hccchHHHHHHHHHHhhcCCeEEEEechh
Confidence 0000 0011 111112222223223 68999999993
Q ss_pred -----------CCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 174 -----------LLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 174 -----------~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
.-|.++|..++++|.+ +. | +....++-+|+++|-.+ -+++||++ ||+..|+++.| +.
T Consensus 255 AIg~kR~d~~t~gDrEVQRTmleLL~q----lD--G--FD~~~nvKVI~ATNR~D-~LDPALLRPGR~DRkIEfplP-d~ 324 (406)
T COG1222 255 AIGAKRFDSGTSGDREVQRTMLELLNQ----LD--G--FDPRGNVKVIMATNRPD-ILDPALLRPGRFDRKIEFPLP-DE 324 (406)
T ss_pred hhhcccccCCCCchHHHHHHHHHHHHh----cc--C--CCCCCCeEEEEecCCcc-ccChhhcCCCcccceeecCCC-CH
Confidence 3456799999999986 11 2 23345789999999544 59999998 99999999988 67
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+..... +..+++++ ++.|+..+. |+ |.-.+..++.-|.-
T Consensus 325 ~gR~~Il~IHtr-------------------------------kM~l~~dvd~e~la~~~~--g~-sGAdlkaictEAGm 370 (406)
T COG1222 325 EGRAEILKIHTR-------------------------------KMNLADDVDLELLARLTE--GF-SGADLKAICTEAGM 370 (406)
T ss_pred HHHHHHHHHHhh-------------------------------hccCccCcCHHHHHHhcC--CC-chHHHHHHHHHHhH
Confidence 788888774321 22333322 233444332 44 56788899999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhccc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~r 345 (369)
.|....+..|+.+|+.+|...|....
T Consensus 371 ~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 371 FAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHhccCeecHHHHHHHHHHHHhcc
Confidence 99999999999999999999988754
No 29
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=8.1e-19 Score=164.69 Aligned_cols=228 Identities=21% Similarity=0.176 Sum_probs=165.1
Q ss_pred CCCCccccChHHHHHHhhhhh--ccCCCCe--eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNV--IDPKIGG--VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l--~~~~~g~--vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
...+.+|||++.+..++.-.+ + +..+ |||.|.+||||..+||+|....+... .+...+||.......++++++
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V--A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~-kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV--AKSDSTVLIRGETGTGKELVARAIHQLSPRRD-KPFVKLNCAALPESLLESELF 295 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH--hcCCCeEEEecCCCccHHHHHHHHHhhCcccC-CCceeeeccccchHHHHHHHh
Confidence 457888999988766554332 2 3333 99999999999999999999986442 122334555555556666666
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
+.- ... -.|...-++|.+..|++|.+||||+..+|.+.|..|+.+|
T Consensus 296 GHe-----------------------KGA-----------FTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvL 341 (550)
T COG3604 296 GHE-----------------------KGA-----------FTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVL 341 (550)
T ss_pred ccc-----------------------ccc-----------cccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHH
Confidence 531 011 1222334578899999999999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
+++.+. |-|...++..++.+|+++|-+ ++++.+.|+.|+.+ +.+.-|+.++...+|...-..
T Consensus 342 QegEie--RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV-~Pl~lPPLRER~~DIplLA~~--------- 409 (550)
T COG3604 342 QEGEIE--RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSV-FPLELPPLRERPEDIPLLAGY--------- 409 (550)
T ss_pred hhccee--ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccc-cccCCCCcccCCccHHHHHHH---------
Confidence 998764 448888888999999999954 25689999999987 887777777777676553211
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
+.+++.. +.-...+.+++++++.|.++..-.| +|.+.+++..|...|
T Consensus 410 ---------Fle~~~~-~~gr~~l~ls~~Al~~L~~y~wPGN---VRELen~veRavlla 456 (550)
T COG3604 410 ---------FLEKFRR-RLGRAILSLSAEALELLSSYEWPGN---VRELENVVERAVLLA 456 (550)
T ss_pred ---------HHHHHHH-hcCCcccccCHHHHHHHHcCCCCCc---HHHHHHHHHHHHHHh
Confidence 1122211 1112268999999999998887544 499999999998887
No 30
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.77 E-value=2.1e-17 Score=165.56 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=121.1
Q ss_pred cccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecc-----e---eeeecCceEEEeecCCCC-CCCCH
Q 017575 152 KAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREG-----I---SISHPARFILIGSGNPEE-GELRP 222 (369)
Q Consensus 152 ~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~-----~---~~~~~~~~~li~t~n~~~-~~l~~ 222 (369)
....+|.+.+|++|+|||||++.+++..|..|+++|+++.+.+.... . ....|.++.+|+++|++. ..+++
T Consensus 206 ~~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~ 285 (608)
T TIGR00764 206 ERVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHP 285 (608)
T ss_pred ccCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCH
Confidence 34568999999999999999999999999999999999887764211 1 234567899999999753 35899
Q ss_pred hHHhhhc---cceeec--CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHH
Q 017575 223 QLLDRFG---MHAQVG--TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISK 297 (369)
Q Consensus 223 al~~R~~---~~i~~~--~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~ 297 (369)
+|++||. +.+.++ .+...+...+++. ++.+++. .......++++++..|.+
T Consensus 286 ~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~---------------------~i~~~~~---r~G~l~~~s~~Av~~Li~ 341 (608)
T TIGR00764 286 ALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ---------------------FVAQEVK---KDGRIPHFTRDAVEEIVR 341 (608)
T ss_pred HHHHHhcCCeEEEEeeccCCCCHHHHHHHHH---------------------HHHHHHH---HhCCCCcCCHHHHHHHHH
Confidence 9999998 545443 3444555444422 1222222 111234789999998887
Q ss_pred HHHHc-CCC-----CCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 298 VCAEL-NVD-----GLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 298 ~~~~~-~~~-----s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
.+.+. +.. +.|.+.++++.|...|..+++..|+.+|+.+|+...
T Consensus 342 ~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 342 EAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 65532 211 458999999999999999999999999999998764
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=8.4e-18 Score=145.48 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=141.4
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhc---cC------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCC
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVI---DP------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPED 98 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~---~~------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 98 (369)
+..+...|++++||++++..+.+-+- +| +..++|++||||||||++||+++...+ .++-.+.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k-------vp~l~vk-- 183 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK-------VPLLLVK-- 183 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC-------CceEEec--
Confidence 44455689999999999876655431 11 355699999999999999999999884 2111000
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccc--cchhhhcCCCeEEEeCCCCCC
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFE--PGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~g~~~~a~~~vl~lDE~~~l~ 176 (369)
..++.+. ..| .|.+..+ .-.-.++.|+|+||||++.+.
T Consensus 184 ----at~liGe---------------------------hVG---------dgar~Ihely~rA~~~aPcivFiDE~DAia 223 (368)
T COG1223 184 ----ATELIGE---------------------------HVG---------DGARRIHELYERARKAAPCIVFIDELDAIA 223 (368)
T ss_pred ----hHHHHHH---------------------------Hhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhh
Confidence 0011110 000 0111111 111223569999999996543
Q ss_pred --HH----------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHH
Q 017575 177 --DH----------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRV 244 (369)
Q Consensus 177 --~~----------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~ 244 (369)
.. +.++|+.-|+. +..+..++.|+++|. +..+++++++||..-|++..|+ .+.+.
T Consensus 224 LdRryQelRGDVsEiVNALLTelDg-----------i~eneGVvtIaaTN~-p~~LD~aiRsRFEeEIEF~LP~-~eEr~ 290 (368)
T COG1223 224 LDRRYQELRGDVSEIVNALLTELDG-----------IKENEGVVTIAATNR-PELLDPAIRSRFEEEIEFKLPN-DEERL 290 (368)
T ss_pred hhhhHHHhcccHHHHHHHHHHhccC-----------cccCCceEEEeecCC-hhhcCHHHHhhhhheeeeeCCC-hHHHH
Confidence 22 45666666653 112456788888884 4469999999999989998884 45565
Q ss_pred HHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchh-HHHHHHHHHHHHH
Q 017575 245 KIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGD-IVSNRAAKALAAL 323 (369)
Q Consensus 245 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~-~~ll~~a~a~A~l 323 (369)
.|+... + ..-.+.++.. ++++...++ |+ |.|.+ ..+++.|--.|..
T Consensus 291 ~ile~y------------------------~-----k~~Plpv~~~-~~~~~~~t~--g~-SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 291 EILEYY------------------------A-----KKFPLPVDAD-LRYLAAKTK--GM-SGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHHHHH------------------------H-----HhCCCccccC-HHHHHHHhC--CC-CchhHHHHHHHHHHHHHHH
Confidence 664422 1 1112344443 455555554 55 67875 4678888888999
Q ss_pred cCCCCCCHHHHHHHHhHHhccc
Q 017575 324 KGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 324 ~~~~~v~~~~i~~a~~~vl~~r 345 (369)
.|+++|+.+|+.+|+..-...|
T Consensus 338 ed~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 338 EDREKVEREDIEKALKKERKRR 359 (368)
T ss_pred hchhhhhHHHHHHHHHhhcccc
Confidence 9999999999999998744433
No 32
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.7e-17 Score=159.06 Aligned_cols=237 Identities=21% Similarity=0.273 Sum_probs=143.7
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.++..+...+....-+| ++|+||+||||||+|+.++..+.-.......+|+... . ..
T Consensus 9 ~~KyRP~-~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~----s-C~ 82 (484)
T PRK14956 9 SRKYRPQ-FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT----S-CL 82 (484)
T ss_pred HHHhCCC-CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc----H-HH
Confidence 3444454 89999999999998888875444456 8999999999999999999988532111111111100 0 00
Q ss_pred hhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
. +..+.. ..++.+.... -.+.-++ ..+... ..... ..++..|+||||+++++.+.+++|+
T Consensus 83 ~----i~~g~~-------~dviEIdaas----~~gVd~I-ReL~e~---l~~~p-~~g~~KV~IIDEah~Ls~~A~NALL 142 (484)
T PRK14956 83 E----ITKGIS-------SDVLEIDAAS----NRGIENI-RELRDN---VKFAP-MGGKYKVYIIDEVHMLTDQSFNALL 142 (484)
T ss_pred H----HHccCC-------ccceeechhh----cccHHHH-HHHHHH---HHhhh-hcCCCEEEEEechhhcCHHHHHHHH
Confidence 0 000000 0011110000 0000000 000000 00000 1234569999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
..|++ .+.++.+|++++. ...+.+++++||.. +.+..++..+.. ..+.
T Consensus 143 KtLEE-------------Pp~~viFILaTte-~~kI~~TI~SRCq~-~~f~~ls~~~i~-~~L~---------------- 190 (484)
T PRK14956 143 KTLEE-------------PPAHIVFILATTE-FHKIPETILSRCQD-FIFKKVPLSVLQ-DYSE---------------- 190 (484)
T ss_pred HHhhc-------------CCCceEEEeecCC-hhhccHHHHhhhhe-eeecCCCHHHHH-HHHH----------------
Confidence 99986 2346666666663 45699999999975 888888543322 2222
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
++.. ...+.++++++..|+..+.. +.|.+.+++..+.+. . ...|+.+++.+++.+.
T Consensus 191 ---------~i~~----~Egi~~e~eAL~~Ia~~S~G----d~RdAL~lLeq~i~~---~-~~~it~~~V~~~lg~~ 246 (484)
T PRK14956 191 ---------KLCK----IENVQYDQEGLFWIAKKGDG----SVRDMLSFMEQAIVF---T-DSKLTGVKIRKMIGYH 246 (484)
T ss_pred ---------HHHH----HcCCCCCHHHHHHHHHHcCC----hHHHHHHHHHHHHHh---C-CCCcCHHHHHHHhCCC
Confidence 1111 13578999999999988853 789999999876543 2 2358999988877544
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=3e-17 Score=154.20 Aligned_cols=220 Identities=22% Similarity=0.277 Sum_probs=150.1
Q ss_pred CCCCccccChHHHHHHhhhhhcc-----CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVID-----PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~-----~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
+.+|.+++|++..++.+...+.. ...++++|+||||+|||++|+.++..+...-.....+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~-------------- 86 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA-------------- 86 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc--------------
Confidence 34899999999998877655521 12235999999999999999999998842110000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
......+. ..+ .....++++||||++.++...++.|+..
T Consensus 87 ------------------------~~~~~~l~------~~l-----------~~l~~~~vl~IDEi~~l~~~~~e~l~~~ 125 (328)
T PRK00080 87 ------------------------LEKPGDLA------AIL-----------TNLEEGDVLFIDEIHRLSPVVEEILYPA 125 (328)
T ss_pred ------------------------ccChHHHH------HHH-----------HhcccCCEEEEecHhhcchHHHHHHHHH
Confidence 00000000 000 0113467999999999999999999999
Q ss_pred HhcCCceeee-cce---eeeec-CceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 187 AASGWNTVER-EGI---SISHP-ARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 187 l~~~~~~~~~-~~~---~~~~~-~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
|++..+.+.. .+. .+... .++++|+++|.. ..++++|.+||...+.+++++ .+....|+...
T Consensus 126 ~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~-~~l~~~L~sRf~~~~~l~~~~-~~e~~~il~~~----------- 192 (328)
T PRK00080 126 MEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA-GLLTSPLRDRFGIVQRLEFYT-VEELEKIVKRS----------- 192 (328)
T ss_pred HHhcceeeeeccCccccceeecCCCceEEeecCCc-ccCCHHHHHhcCeeeecCCCC-HHHHHHHHHHH-----------
Confidence 9876543211 111 11111 357888888854 458999999998878898884 55555665422
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
.. ...+.+++++...|...+.. ++|.+..+++.+...|...+...|+.+++..++...
T Consensus 193 --------------~~----~~~~~~~~~~~~~ia~~~~G----~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 193 --------------AR----ILGVEIDEEGALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred --------------HH----HcCCCcCHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 11 12578999998888877753 679999999999998888777789999999998753
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=5.2e-17 Score=151.23 Aligned_cols=217 Identities=19% Similarity=0.269 Sum_probs=145.9
Q ss_pred CCccccChHHHHHHhhhhhcc-----CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVID-----PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~-----~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (369)
+|.+++||+.+++.+...+.. ....+++|+||||||||++++.++..+...- ........
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~-------~~~~~~~~-------- 66 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL-------KITSGPAL-------- 66 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE-------EEeccchh--------
Confidence 578899999998877665521 1233599999999999999999998874211 00000000
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
.....+ ...+ .....++++||||++.+++..++.|+.+|+
T Consensus 67 -----------------------~~~~~l------~~~l-----------~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~ 106 (305)
T TIGR00635 67 -----------------------EKPGDL------AAIL-----------TNLEEGDVLFIDEIHRLSPAVEELLYPAME 106 (305)
T ss_pred -----------------------cCchhH------HHHH-----------HhcccCCEEEEehHhhhCHHHHHHhhHHHh
Confidence 000000 0000 011246799999999999999999999998
Q ss_pred cCCceeee-cc---eeeeec-CceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 189 SGWNTVER-EG---ISISHP-ARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 189 ~~~~~~~~-~~---~~~~~~-~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
++...+.- .+ ..+..+ .++.+|+++|.. ..+++++++||...+.+.+++ .+....++...
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~-~~l~~~l~sR~~~~~~l~~l~-~~e~~~il~~~------------- 171 (305)
T TIGR00635 107 DFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA-GMLTSPLRDRFGIILRLEFYT-VEELAEIVSRS------------- 171 (305)
T ss_pred hhheeeeeccCccccceeecCCCeEEEEecCCc-cccCHHHHhhcceEEEeCCCC-HHHHHHHHHHH-------------
Confidence 76543211 11 112222 347788887743 468999999998878888884 45555554422
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 264 YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
.. ...+.++++++..|...+.. ++|.+..++..+...|...+...|+.+++..++..
T Consensus 172 ------------~~----~~~~~~~~~al~~ia~~~~G----~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 172 ------------AG----LLNVEIEPEAALEIARRSRG----TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred ------------HH----HhCCCcCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 11 12568899999888877653 57999999998888888777778999999999986
No 35
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=1.6e-17 Score=165.04 Aligned_cols=236 Identities=18% Similarity=0.291 Sum_probs=142.9
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
+.++++|. +|++++||+.+++.+.-.+......| +||+||+|+||||+++.+++.+.-.......+|+. .
T Consensus 6 LarKYRPq-tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~--------C 76 (830)
T PRK07003 6 LARKWRPK-DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV--------C 76 (830)
T ss_pred HHHHhCCC-cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc--------c
Confidence 34455555 89999999999999988874323345 79999999999999999999884221111111110 0
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
..+.. +..+... .++.+... ...+.+. ..+..- .+.+ ..++..|+||||+++|+...++
T Consensus 77 ~sCr~-I~~G~h~-------DviEIDAas~rgVDdIR------eLIe~a--~~~P---~~gr~KVIIIDEah~LT~~A~N 137 (830)
T PRK07003 77 RACRE-IDEGRFV-------DYVEMDAASNRGVDEMA------ALLERA--VYAP---VDARFKVYMIDEVHMLTNHAFN 137 (830)
T ss_pred HHHHH-HhcCCCc-------eEEEecccccccHHHHH------HHHHHH--Hhcc---ccCCceEEEEeChhhCCHHHHH
Confidence 11111 1111000 01111100 0011111 111000 0111 1234579999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|++.|++ .+.++.||+++| ...++...+++||.. +.+..++..+.. ..+.
T Consensus 138 ALLKtLEE-------------PP~~v~FILaTt-d~~KIp~TIrSRCq~-f~Fk~Ls~eeIv-~~L~------------- 188 (830)
T PRK07003 138 AMLKTLEE-------------PPPHVKFILATT-DPQKIPVTVLSRCLQ-FNLKQMPAGHIV-SHLE------------- 188 (830)
T ss_pred HHHHHHHh-------------cCCCeEEEEEEC-ChhhccchhhhheEE-EecCCcCHHHHH-HHHH-------------
Confidence 99999987 234666667766 345689999999975 998888543332 2222
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
+|.. .+.+.++++.+..|...+.. |.|.+++++..+.++. ...|+.++|..++...
T Consensus 189 ------------~Il~----~EgI~id~eAL~lIA~~A~G----smRdALsLLdQAia~~----~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 189 ------------RILG----EERIAFEPQALRLLARAAQG----SMRDALSLTDQAIAYS----ANEVTETAVSGMLGAL 244 (830)
T ss_pred ------------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCCC
Confidence 2222 23578999999999888863 6799999888766432 3357777776665433
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.75 E-value=7.8e-18 Score=154.46 Aligned_cols=217 Identities=19% Similarity=0.246 Sum_probs=135.3
Q ss_pred HhhhhcCCCCCCCccccChHHHH---HHhhhhhccCCCC---eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 23 KRSKESQRPVYPFTAIVGQEEMK---LCLLLNVIDPKIG---GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 23 ~~~~~~~~~~~~~~~i~G~~~~~---~~l~~~l~~~~~g---~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.+..+|. +.++++++||+.++ ..+.-.+ ..| +..|+|||||||||+|++|++... .+|....
T Consensus 13 PLA~rmR--P~~lde~vGQ~HLlg~~~~lrr~v---~~~~l~SmIl~GPPG~GKTTlA~liA~~~~-------~~f~~~s 80 (436)
T COG2256 13 PLAERLR--PKSLDEVVGQEHLLGEGKPLRRAV---EAGHLHSMILWGPPGTGKTTLARLIAGTTN-------AAFEALS 80 (436)
T ss_pred ChHHHhC--CCCHHHhcChHhhhCCCchHHHHH---hcCCCceeEEECCCCCCHHHHHHHHHHhhC-------CceEEec
Confidence 3344444 34789999999874 2333344 344 399999999999999999999874 2221100
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
- ......++ ...+...... ....+.-|+|+||+|+++
T Consensus 81 A--------------------------------v~~gvkdl------r~i~e~a~~~-----~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 81 A--------------------------------VTSGVKDL------REIIEEARKN-----RLLGRRTILFLDEIHRFN 117 (436)
T ss_pred c--------------------------------ccccHHHH------HHHHHHHHHH-----HhcCCceEEEEehhhhcC
Confidence 0 00000011 1111111000 111234599999999999
Q ss_pred HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecC-CCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccC
Q 017575 177 DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGN-PEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDK 255 (369)
Q Consensus 177 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n-~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~ 255 (369)
+..|..|+-.|++|.+. +|+++. -+...+.+||++|+.+ +.+.+.+. +....++.+.
T Consensus 118 K~QQD~lLp~vE~G~ii---------------lIGATTENPsF~ln~ALlSR~~v-f~lk~L~~-~di~~~l~ra----- 175 (436)
T COG2256 118 KAQQDALLPHVENGTII---------------LIGATTENPSFELNPALLSRARV-FELKPLSS-EDIKKLLKRA----- 175 (436)
T ss_pred hhhhhhhhhhhcCCeEE---------------EEeccCCCCCeeecHHHhhhhhe-eeeecCCH-HHHHHHHHHH-----
Confidence 99999999999987544 455543 2345699999999987 88888854 4444554421
Q ss_pred CChHHHhhhHHHHHHHHHHHHHHHhhC-CCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHH
Q 017575 256 NPKEFRDSYKAEQAKLQQQIASARSSL-PAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDI 334 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i 334 (369)
....-+... ..+.+++++..+|...+.. ..|.+.+++..+...+.-+. ....+++
T Consensus 176 ------------------~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~~~~~~~--~~~~~~l 231 (436)
T COG2256 176 ------------------LLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAALSAEPDE--VLILELL 231 (436)
T ss_pred ------------------HhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHHhcCCCc--ccCHHHH
Confidence 011112221 2466899999999888753 56999999998877665543 3336667
Q ss_pred HHHHhH
Q 017575 335 ATVMPN 340 (369)
Q Consensus 335 ~~a~~~ 340 (369)
...++.
T Consensus 232 ~~~l~~ 237 (436)
T COG2256 232 EEILQR 237 (436)
T ss_pred HHHHhh
Confidence 666654
No 37
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2e-17 Score=162.44 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=144.5
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++++|. .|++++||+.+++.+.-.+......| +||+||+|+||||+|++++..+.-.......+|+.. .
T Consensus 7 ~~kyRP~-~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C--------~ 77 (509)
T PRK14958 7 ARKWRPR-CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC--------E 77 (509)
T ss_pred HHHHCCC-CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC--------H
Confidence 4455555 89999999999999988885434445 899999999999999999998843221111222211 0
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+. .+..+... .++.+.. ....+. +...+..- .+.+ ..++..|+||||++++....++.
T Consensus 78 ~C~-~i~~g~~~-------d~~eidaas~~~v~~------iR~l~~~~--~~~p---~~~~~kV~iIDE~~~ls~~a~na 138 (509)
T PRK14958 78 NCR-EIDEGRFP-------DLFEVDAASRTKVED------TRELLDNI--PYAP---TKGRFKVYLIDEVHMLSGHSFNA 138 (509)
T ss_pred HHH-HHhcCCCc-------eEEEEcccccCCHHH------HHHHHHHH--hhcc---ccCCcEEEEEEChHhcCHHHHHH
Confidence 000 01011100 0111110 001111 11111110 0111 12345699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .|.++.+|++++ ++..+...+++||.. +++.+++..+.. ..+.
T Consensus 139 LLk~LEe-------------pp~~~~fIlatt-d~~kl~~tI~SRc~~-~~f~~l~~~~i~-~~l~-------------- 188 (509)
T PRK14958 139 LLKTLEE-------------PPSHVKFILATT-DHHKLPVTVLSRCLQ-FHLAQLPPLQIA-AHCQ-------------- 188 (509)
T ss_pred HHHHHhc-------------cCCCeEEEEEEC-ChHhchHHHHHHhhh-hhcCCCCHHHHH-HHHH--------------
Confidence 9999987 244555565555 345688889999975 888877533322 2211
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
.+.. ...+.++++++.+|...+.. |.|.+.+++..+. ++ |...|+.++|.+++..+-
T Consensus 189 -----------~il~----~egi~~~~~al~~ia~~s~G----slR~al~lLdq~i--a~--~~~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 189 -----------HLLK----EENVEFENAALDLLARAANG----SVRDALSLLDQSI--AY--GNGKVLIADVKTMLGTIE 245 (509)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHH--hc--CCCCcCHHHHHHHHCCCC
Confidence 1111 12578899999888887742 7899999887664 33 456799999988866443
Q ss_pred c
Q 017575 343 R 343 (369)
Q Consensus 343 ~ 343 (369)
.
T Consensus 246 ~ 246 (509)
T PRK14958 246 P 246 (509)
T ss_pred H
Confidence 3
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.7e-17 Score=159.55 Aligned_cols=235 Identities=19% Similarity=0.299 Sum_probs=143.2
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
+.++.||. +|++++||+.+++.+.-++......| ++|+||+|+||||+|++++..+.-.......+|+. .
T Consensus 5 LarKyRPk-tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~--------C 75 (702)
T PRK14960 5 LARKYRPR-NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV--------C 75 (702)
T ss_pred HHHHhCCC-CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc--------C
Confidence 34555564 89999999999999988884322235 89999999999999999999884221111112211 0
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
..+. .+..+... .++.+... ...+. +...+.... +.+ ..++..|+||||+++++...++
T Consensus 76 ~sC~-~I~~g~hp-------DviEIDAAs~~~Vdd------IReli~~~~--y~P---~~gk~KV~IIDEVh~LS~~A~N 136 (702)
T PRK14960 76 ATCK-AVNEGRFI-------DLIEIDAASRTKVED------TRELLDNVP--YAP---TQGRFKVYLIDEVHMLSTHSFN 136 (702)
T ss_pred HHHH-HHhcCCCC-------ceEEecccccCCHHH------HHHHHHHHh--hhh---hcCCcEEEEEechHhcCHHHHH
Confidence 0000 00001000 01111100 00111 111111110 111 1234569999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|++.|++ .+.+..+|++++ ....+..++++||.. +.+.+++..+.. ..+.
T Consensus 137 ALLKtLEE-------------PP~~v~FILaTt-d~~kIp~TIlSRCq~-feFkpLs~eEI~-k~L~------------- 187 (702)
T PRK14960 137 ALLKTLEE-------------PPEHVKFLFATT-DPQKLPITVISRCLQ-FTLRPLAVDEIT-KHLG------------- 187 (702)
T ss_pred HHHHHHhc-------------CCCCcEEEEEEC-ChHhhhHHHHHhhhe-eeccCCCHHHHH-HHHH-------------
Confidence 99999986 133455555555 234588899999975 999888544433 2222
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
++.. ...+.++++++.+|+..+.. +.|.+.+++..+.+ + |...|+.+++..++..
T Consensus 188 ------------~Il~----kEgI~id~eAL~~IA~~S~G----dLRdALnLLDQaIa--y--g~g~IT~edV~~lLG~ 242 (702)
T PRK14960 188 ------------AILE----KEQIAADQDAIWQIAESAQG----SLRDALSLTDQAIA--Y--GQGAVHHQDVKEMLGL 242 (702)
T ss_pred ------------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHH--h--cCCCcCHHHHHHHhcc
Confidence 1111 23578999999888887742 78999998876543 3 4567999999887663
No 39
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.73 E-value=4.2e-17 Score=155.40 Aligned_cols=241 Identities=19% Similarity=0.130 Sum_probs=168.1
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe--eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG--VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~--vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
.....++|+..+...+.-.+..-+..+ |+|.|++||||-.+|++|....+... .+...+||-....+.+.+++++.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~-~PFVavNcaAip~~l~ESELFGh- 215 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAK-GPFIAVNCAAIPENLLESELFGH- 215 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccC-CCceeeecccCCHHHHHHHhhcc-
Confidence 357789999887665544442113333 99999999999999999999986432 11122344444555556665542
Q ss_pred hccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcC
Q 017575 111 VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASG 190 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~ 190 (369)
++..-.|...-+.|.+..|++|.||||||..+|.+.|..|+.+|+++
T Consensus 216 ---------------------------------ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~ 262 (464)
T COG2204 216 ---------------------------------EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQER 262 (464)
T ss_pred ---------------------------------cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcC
Confidence 00001233345679999999999999999999999999999999998
Q ss_pred CceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 191 WNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
.+.-. |...+.+.++.+|+++|.+- +.+.+.|..|+.+ +++.-|+.++..++|...-
T Consensus 263 ~~~rv--G~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV-~~i~iPpLRER~EDIp~L~-------------- 325 (464)
T COG2204 263 EFERV--GGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNV-VPLRLPPLRERKEDIPLLA-------------- 325 (464)
T ss_pred eeEec--CCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhcc-ceecCCcccccchhHHHHH--------------
Confidence 76543 76777788999999999542 4589999999987 8888777788887885532
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIAT 336 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~ 336 (369)
+.+.+++.+... .+...++++++..|..+..-.|+ |.+.+++..+.. +...+.++.+|+..
T Consensus 326 ----~hfl~~~~~~~~-~~~~~~s~~a~~~L~~y~WPGNV---REL~N~ver~~i---l~~~~~i~~~~l~~ 386 (464)
T COG2204 326 ----EHFLKRFAAELG-RPPKGFSPEALAALLAYDWPGNV---RELENVVERAVI---LSEGPEIEVEDLPL 386 (464)
T ss_pred ----HHHHHHHHHHcC-CCCCCCCHHHHHHHHhCCCChHH---HHHHHHHHHHHh---cCCccccchhhccc
Confidence 222223333222 34578999999999988876554 888887776544 44455677766553
No 40
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.73 E-value=2.2e-17 Score=159.44 Aligned_cols=240 Identities=19% Similarity=0.303 Sum_probs=152.1
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
+.+++||. .|++++||+.++..+..++....-.| +++.||.|+||||+||.+|..+.=.....+.+|+. .
T Consensus 6 L~rKyRP~-~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~--------C 76 (515)
T COG2812 6 LARKYRPK-TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK--------C 76 (515)
T ss_pred HHHHhCcc-cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh--------h
Confidence 45666666 89999999999999999985333345 99999999999999999999984211111122211 1
Q ss_pred hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
..+ ..+..+... ++..+... +-.|.-++....+.-. +.| ..++..|++|||+|++.....++|
T Consensus 77 ~~C-k~I~~g~~~-------DviEiDaA----Sn~gVddiR~i~e~v~--y~P---~~~ryKVyiIDEvHMLS~~afNAL 139 (515)
T COG2812 77 ISC-KEINEGSLI-------DVIEIDAA----SNTGVDDIREIIEKVN--YAP---SEGRYKVYIIDEVHMLSKQAFNAL 139 (515)
T ss_pred hhh-HhhhcCCcc-------cchhhhhh----hccChHHHHHHHHHhc--cCC---ccccceEEEEecHHhhhHHHHHHH
Confidence 110 011111000 01111000 0001111111111111 111 235667999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
++.|++ .|.++.+|+++. ++.+++..+++||.. +.+..++..+....+
T Consensus 140 LKTLEE-------------PP~hV~FIlATT-e~~Kip~TIlSRcq~-f~fkri~~~~I~~~L----------------- 187 (515)
T COG2812 140 LKTLEE-------------PPSHVKFILATT-EPQKIPNTILSRCQR-FDFKRLDLEEIAKHL----------------- 187 (515)
T ss_pred hccccc-------------CccCeEEEEecC-CcCcCchhhhhcccc-ccccCCCHHHHHHHH-----------------
Confidence 999987 466766666555 346799999999975 888888533222111
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 264 YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
+.|. ..+++.++++++..|...+.. |.|.+.++++.+.+... ..|+.+.++.++..+-.
T Consensus 188 ---------~~i~----~~E~I~~e~~aL~~ia~~a~G----s~RDalslLDq~i~~~~----~~It~~~v~~~lG~~~~ 246 (515)
T COG2812 188 ---------AAIL----DKEGINIEEDALSLIARAAEG----SLRDALSLLDQAIAFGE----GEITLESVRDMLGLTDI 246 (515)
T ss_pred ---------HHHH----HhcCCccCHHHHHHHHHHcCC----ChhhHHHHHHHHHHccC----CcccHHHHHHHhCCCCH
Confidence 1222 234789999999988888763 78999999999776532 67888888877665443
No 41
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=6.3e-17 Score=158.88 Aligned_cols=234 Identities=17% Similarity=0.284 Sum_probs=138.7
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce-----eecCCCCCCCCCCc
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK-----VVVGDPYNSDPEDP 99 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~~~ 99 (369)
.++++|. +|++++||+.+++.+.-.+......| +||+||+|+||||+++.+++.+.-.. .....+|+.
T Consensus 7 arKYRPq-tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~----- 80 (700)
T PRK12323 7 ARKWRPR-DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ----- 80 (700)
T ss_pred HHHhCCC-cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc-----
Confidence 3444554 89999999999999988885333445 89999999999999999999884210 000011111
Q ss_pred chhhhhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH
Q 017575 100 EAMGIEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 177 (369)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~ 177 (369)
...+.. +..+... .++.+... ...+.+-..+ .. ..+.+ ..++..|+||||++++..
T Consensus 81 ---C~sC~~-I~aG~hp-------DviEIdAas~~gVDdIReLi------e~--~~~~P---~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 81 ---CRACTE-IDAGRFV-------DYIEMDAASNRGVDEMAQLL------DK--AVYAP---TAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred ---cHHHHH-HHcCCCC-------cceEecccccCCHHHHHHHH------HH--HHhch---hcCCceEEEEEChHhcCH
Confidence 000100 0001000 01111100 0111111110 00 00111 123456999999999999
Q ss_pred HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCC
Q 017575 178 HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNP 257 (369)
Q Consensus 178 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~ 257 (369)
..++.|++.|++ .+.++.||+++| ...++.+.+++||.. +.+..++..+.. ..+.
T Consensus 139 ~AaNALLKTLEE-------------PP~~v~FILaTt-ep~kLlpTIrSRCq~-f~f~~ls~eei~-~~L~--------- 193 (700)
T PRK12323 139 HAFNAMLKTLEE-------------PPEHVKFILATT-DPQKIPVTVLSRCLQ-FNLKQMPPGHIV-SHLD--------- 193 (700)
T ss_pred HHHHHHHHhhcc-------------CCCCceEEEEeC-ChHhhhhHHHHHHHh-cccCCCChHHHH-HHHH---------
Confidence 999999999987 234556666666 244689999999975 999888544333 2211
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 017575 258 KEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATV 337 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a 337 (369)
++.. ...+.++++++..|...+.. |+|.+.+++..+... +...|+.+++..+
T Consensus 194 ----------------~Il~----~Egi~~d~eAL~~IA~~A~G----s~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 194 ----------------AILG----EEGIAHEVNALRLLAQAAQG----SMRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred ----------------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 1111 12577888888888877653 789998888765432 2335777766665
Q ss_pred HhH
Q 017575 338 MPN 340 (369)
Q Consensus 338 ~~~ 340 (369)
+..
T Consensus 246 LG~ 248 (700)
T PRK12323 246 LGA 248 (700)
T ss_pred hCC
Confidence 543
No 42
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.72 E-value=3.7e-17 Score=156.17 Aligned_cols=266 Identities=23% Similarity=0.278 Sum_probs=181.9
Q ss_pred ccccChHHHHHHhhhhhccC-----CC-----C--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDP-----KI-----G--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~-----~~-----g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
..|||...++.++.++++.. +. | |+||+|.||||||.++|+++...+..-...|.--.....+
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLT----- 523 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLT----- 523 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcccccee-----
Confidence 35799999999999999631 22 2 3999999999999999999988753321111100000000
Q ss_pred hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
.....- -.++++.+..|.+..|+.||++|||++++...-...+
T Consensus 524 -------------------a~v~Kd------------------PvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSI 566 (854)
T KOG0477|consen 524 -------------------AYVRKD------------------PVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSI 566 (854)
T ss_pred -------------------EEEeeC------------------CccceeeeccCeEEEccCceEEeehhhhhcccccchH
Confidence 000000 0134455557888889999999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHH---
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVE--- 248 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~--- 248 (369)
.+.|++..|.+.+.|...++...+.+|+|+||..+ .+.+++++||++-..+...-++.+.+.+++
T Consensus 567 HEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV 646 (854)
T KOG0477|consen 567 HEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVV 646 (854)
T ss_pred HHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHH
Confidence 99999999999998998899999999999999653 378999999998555544334444434333
Q ss_pred -HhhhccCCCh---H----HHhh--hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcC-----CC----CCch
Q 017575 249 -ERARFDKNPK---E----FRDS--YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELN-----VD----GLRG 309 (369)
Q Consensus 249 -~~~~~~~~~~---~----~~~~--~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~-----~~----s~R~ 309 (369)
+...++...+ + +... -+..++.+.++|.-++..... .+.+--.+.+...+..++ .+ +.|.
T Consensus 647 ~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~P-kL~q~d~~K~s~vya~lRkES~~tGs~piTvRH 725 (854)
T KOG0477|consen 647 GSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRP-KLNQMDMDKISSVYADLRKESMATGSLPITVRH 725 (854)
T ss_pred HhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHhhccccCCchhhHHH
Confidence 2222332110 0 0111 124667888999888876652 233332333333332221 11 6799
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 310 DIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 310 ~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
+..+++.+.|.|.++-++.|+.+|+..|++.++.+
T Consensus 726 ieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 726 IESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999987775
No 43
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.2e-16 Score=161.56 Aligned_cols=231 Identities=17% Similarity=0.307 Sum_probs=135.2
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
+.++.||. .|++++||+.+++.+.-++....-.| ++|+||+||||||+|++++..+.......+.+|.. .
T Consensus 6 LaeKyRP~-tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~--------C 76 (944)
T PRK14949 6 LARKWRPA-TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV--------C 76 (944)
T ss_pred HHHHhCCC-CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC--------c
Confidence 34455554 89999999999998888774333345 79999999999999999999885321111111111 0
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
..+.. +..+.. ..++.+... ...+.+ +.+... ..+.+ ..++..|+||||++++....++
T Consensus 77 ~sC~~-i~~g~~-------~DviEidAas~~kVDdI-------ReLie~-v~~~P---~~gk~KViIIDEAh~LT~eAqN 137 (944)
T PRK14949 77 SSCVE-IAQGRF-------VDLIEVDAASRTKVDDT-------RELLDN-VQYRP---SRGRFKVYLIDEVHMLSRSSFN 137 (944)
T ss_pred hHHHH-HhcCCC-------ceEEEeccccccCHHHH-------HHHHHH-HHhhh---hcCCcEEEEEechHhcCHHHHH
Confidence 00000 000000 000000000 000000 000000 01111 1234569999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|++.|++ .+.++.||++++. ...+.+.+++||.. +.+.+++..+.. ..+.
T Consensus 138 ALLKtLEE-------------PP~~vrFILaTTe-~~kLl~TIlSRCq~-f~fkpLs~eEI~-~~L~------------- 188 (944)
T PRK14949 138 ALLKTLEE-------------PPEHVKFLLATTD-PQKLPVTVLSRCLQ-FNLKSLTQDEIG-TQLN------------- 188 (944)
T ss_pred HHHHHHhc-------------cCCCeEEEEECCC-chhchHHHHHhheE-EeCCCCCHHHHH-HHHH-------------
Confidence 99999997 2345555555552 34588999999965 999888544333 2222
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIAT 336 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~ 336 (369)
.+... ..+.++++++..|..++.. ++|.+.+++..+.+. +...++.+.+..
T Consensus 189 ------------~il~~----EgI~~edeAL~lIA~~S~G----d~R~ALnLLdQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 189 ------------HILTQ----EQLPFEAEALTLLAKAANG----SMRDALSLTDQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred ------------HHHHH----cCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCcccHHHHHH
Confidence 11111 2578899999999888752 679999988765532 233454444433
No 44
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.70 E-value=5.4e-16 Score=155.99 Aligned_cols=253 Identities=23% Similarity=0.313 Sum_probs=151.5
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 108 (369)
+.+|++++|++.++..+...+..+...+++|+|||||||||+|+++++........ ...+|... ++..+......
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i--~~~~l~~d~~~ 227 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV--DGTTLRWDPRE 227 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE--echhccCCHHH
Confidence 45899999999988877666643344459999999999999999999887432211 01111111 11110000000
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHh-hhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL-TEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
. . ..++ ....+..... ....+ ..|......|.+..++++++||||++.+++..|..|+.+|
T Consensus 228 i-~-----------~~ll----g~~~~~~~~~--a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 228 V-T-----------NPLL----GSVHDPIYQG--ARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL 289 (615)
T ss_pred H-h-----------HHhc----CCccHHHHHH--HHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH
Confidence 0 0 0000 0000000000 00001 1122334567788888999999999999999999999999
Q ss_pred hcCCceeeecce---------------eeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhh
Q 017575 188 ASGWNTVEREGI---------------SISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERAR 252 (369)
Q Consensus 188 ~~~~~~~~~~~~---------------~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~ 252 (369)
+++.+.+..... ....+..+.++++++..+..++++|.+||.. +.++++ ..+....|+...
T Consensus 290 e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pl-s~edi~~Il~~~-- 365 (615)
T TIGR02903 290 EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPL-TPEDIALIVLNA-- 365 (615)
T ss_pred hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCC-CHHHHHHHHHHH--
Confidence 987655431100 0112345777776654555789999999985 777766 455555554421
Q ss_pred ccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHc--------
Q 017575 253 FDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALK-------- 324 (369)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-------- 324 (369)
.. ...+.+++++++.|..++. ..|.+.+.+..+...+..+
T Consensus 366 -----------------------a~----~~~v~ls~eal~~L~~ys~-----~gRraln~L~~~~~~~~~~~~~~~~~~ 413 (615)
T TIGR02903 366 -----------------------AE----KINVHLAAGVEELIARYTI-----EGRKAVNILADVYGYALYRAAEAGKEN 413 (615)
T ss_pred -----------------------HH----HcCCCCCHHHHHHHHHCCC-----cHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 11 1135688999988888765 2377777776665554322
Q ss_pred CCCCCCHHHHHHHHhH
Q 017575 325 GRDKVSAEDIATVMPN 340 (369)
Q Consensus 325 ~~~~v~~~~i~~a~~~ 340 (369)
+...|+.+|+.++++.
T Consensus 414 ~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 414 DKVTITQDDVYEVIQI 429 (615)
T ss_pred CCeeECHHHHHHHhCC
Confidence 1226899999999875
No 45
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1.9e-16 Score=157.81 Aligned_cols=233 Identities=18% Similarity=0.301 Sum_probs=139.5
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.+++.+...+....-.| ++|+||+|+||||+|+.++..+.-.......+|.. ..
T Consensus 7 a~KyRP~-~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~--------C~ 77 (647)
T PRK07994 7 ARKWRPQ-TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE--------CD 77 (647)
T ss_pred HHHhCCC-CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC--------CH
Confidence 3445554 89999999999999988884333345 79999999999999999999884221111111111 11
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
. +..+..+... .++.+... ...+.+ .. +... ..+.+ ..++..|+||||++++....++.
T Consensus 78 ~-C~~i~~g~~~-------D~ieidaas~~~Vddi------R~-li~~-~~~~p---~~g~~KV~IIDEah~Ls~~a~NA 138 (647)
T PRK07994 78 N-CREIEQGRFV-------DLIEIDAASRTKVEDT------RE-LLDN-VQYAP---ARGRFKVYLIDEVHMLSRHSFNA 138 (647)
T ss_pred H-HHHHHcCCCC-------CceeecccccCCHHHH------HH-HHHH-HHhhh---hcCCCEEEEEechHhCCHHHHHH
Confidence 1 1111111110 01111000 001111 10 1000 01111 12345699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .|.++.||++++ ....+.+.+++||.. +.+.+++. +.....+.
T Consensus 139 LLKtLEE-------------Pp~~v~FIL~Tt-~~~kLl~TI~SRC~~-~~f~~Ls~-~ei~~~L~-------------- 188 (647)
T PRK07994 139 LLKTLEE-------------PPEHVKFLLATT-DPQKLPVTILSRCLQ-FHLKALDV-EQIRQQLE-------------- 188 (647)
T ss_pred HHHHHHc-------------CCCCeEEEEecC-CccccchHHHhhheE-eeCCCCCH-HHHHHHHH--------------
Confidence 9999997 234555555555 234689999999965 99988854 33322222
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
++.. ...+.++++++..|...+.. +.|.+.+++..+-+. +...|+.+++..++.
T Consensus 189 -----------~il~----~e~i~~e~~aL~~Ia~~s~G----s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 189 -----------HILQ----AEQIPFEPRALQLLARAADG----SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 1111 12578889998888877652 789999988765432 334577777777655
No 46
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.4e-16 Score=148.00 Aligned_cols=234 Identities=18% Similarity=0.275 Sum_probs=139.4
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
+.++.+|. .|++++||+.+++.+.-++......| ++|+||+|+||||+|++++..+.-.......+|.. | ...
T Consensus 6 l~~kyrP~-~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~----c-~~c 79 (363)
T PRK14961 6 LARKWRPQ-YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK----C-IIC 79 (363)
T ss_pred HHHHhCCC-chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC----C-HHH
Confidence 34455554 89999999999999888874323335 79999999999999999998884211111111111 0 000
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
.++ ..+... .+..+... ...+.+ ......-. ..+ ..++..+++|||++.++...++
T Consensus 80 ~~~----~~~~~~-------d~~~~~~~~~~~v~~i------r~i~~~~~--~~p---~~~~~kviIIDEa~~l~~~a~n 137 (363)
T PRK14961 80 KEI----EKGLCL-------DLIEIDAASRTKVEEM------REILDNIY--YSP---SKSRFKVYLIDEVHMLSRHSFN 137 (363)
T ss_pred HHH----hcCCCC-------ceEEecccccCCHHHH------HHHHHHHh--cCc---ccCCceEEEEEChhhcCHHHHH
Confidence 000 000000 00000000 001111 01001000 001 1134569999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|++.|++- +....+|++++. ...+.+++.+||.. +++.+++ .+....++...
T Consensus 138 aLLk~lEe~-------------~~~~~fIl~t~~-~~~l~~tI~SRc~~-~~~~~l~-~~el~~~L~~~----------- 190 (363)
T PRK14961 138 ALLKTLEEP-------------PQHIKFILATTD-VEKIPKTILSRCLQ-FKLKIIS-EEKIFNFLKYI----------- 190 (363)
T ss_pred HHHHHHhcC-------------CCCeEEEEEcCC-hHhhhHHHHhhceE-EeCCCCC-HHHHHHHHHHH-----------
Confidence 999999861 234445555442 23588999999965 8888885 44443443311
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.+. ..+.++++++.+|...+.. ++|.+.+++..+.+. +...|+.+++.+++.
T Consensus 191 --------------~~~----~g~~i~~~al~~ia~~s~G----~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 191 --------------LIK----ESIDTDEYALKLIAYHAHG----SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred --------------HHH----cCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 111 2467899999888887642 679988888776543 467799999988765
No 47
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.69 E-value=4.9e-17 Score=133.52 Aligned_cols=128 Identities=34% Similarity=0.491 Sum_probs=87.5
Q ss_pred eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhh
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVC 138 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (369)
+|+|+||||||||++++.++..+... +..+. .+...+.+.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~-------~~~i~-------------------------------~~~~~~~~dl~ 42 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRP-------VIRIN-------------------------------CSSDTTEEDLI 42 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCE-------EEEEE--------------------------------TTTSTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcc-------eEEEE-------------------------------eccccccccce
Confidence 38999999999999999999998421 11111 22233444455
Q ss_pred cccchhHHhhhcccccccchhhhc--CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecC------ceEEE
Q 017575 139 GTIDIEKALTEGVKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPA------RFILI 210 (369)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~g~~~~a--~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~------~~~li 210 (369)
|..... .+...+.+|.+.++ ++.+++|||+|+.+++++..|+.+++++.+.+...+.....+. .|.+|
T Consensus 43 g~~~~~----~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 118 (139)
T PF07728_consen 43 GSYDPS----NGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRII 118 (139)
T ss_dssp CEEET-----TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEE
T ss_pred eeeeec----ccccccccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEE
Confidence 444432 44455666666654 7889999999999999999999999998876654444444443 49999
Q ss_pred eecCCCC---CCCCHhHHhhh
Q 017575 211 GSGNPEE---GELRPQLLDRF 228 (369)
Q Consensus 211 ~t~n~~~---~~l~~al~~R~ 228 (369)
+|+||.. ..+++||+|||
T Consensus 119 ~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 119 ATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEESSST--TTTTCHHHHTT-
T ss_pred EEEcCCCCCcCcCCHHHHhhC
Confidence 9999876 35999999998
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=3e-16 Score=155.81 Aligned_cols=236 Identities=17% Similarity=0.294 Sum_probs=143.5
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.+++.+...+......| +||+||+|+||||+|++++..+.-.......+|.. ..
T Consensus 7 arKYRP~-tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~--------C~ 77 (709)
T PRK08691 7 ARKWRPK-TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV--------CQ 77 (709)
T ss_pred HHHhCCC-CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc--------cH
Confidence 3444554 89999999999999888875333345 89999999999999999999874221111111111 00
Q ss_pred hhhhhhhccccchhhhhccccccCC--CCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLP--LGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.. +..+... .++.+. .....+.+ ...+... .+.+ ..++..|+||||+++++...++.
T Consensus 78 sCr~-i~~g~~~-------DvlEidaAs~~gVd~I------Relle~a--~~~P---~~gk~KVIIIDEad~Ls~~A~NA 138 (709)
T PRK08691 78 SCTQ-IDAGRYV-------DLLEIDAASNTGIDNI------REVLENA--QYAP---TAGKYKVYIIDEVHMLSKSAFNA 138 (709)
T ss_pred HHHH-HhccCcc-------ceEEEeccccCCHHHH------HHHHHHH--Hhhh---hhCCcEEEEEECccccCHHHHHH
Confidence 0000 0001000 000000 00001111 1111110 0011 11345699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .+.++.+|+++| ....+...+++||.. +.+.+++..+ ....+.
T Consensus 139 LLKtLEE-------------Pp~~v~fILaTt-d~~kL~~TIrSRC~~-f~f~~Ls~ee-I~~~L~-------------- 188 (709)
T PRK08691 139 MLKTLEE-------------PPEHVKFILATT-DPHKVPVTVLSRCLQ-FVLRNMTAQQ-VADHLA-------------- 188 (709)
T ss_pred HHHHHHh-------------CCCCcEEEEEeC-CccccchHHHHHHhh-hhcCCCCHHH-HHHHHH--------------
Confidence 9999986 134555666666 344688999999964 8888885433 333322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
.+.. ...+.++++++.+|.+.+.. |.|.+.+++..+.+. +...|+.++|..++....
T Consensus 189 -----------~Il~----kEgi~id~eAL~~Ia~~A~G----slRdAlnLLDqaia~----g~g~It~e~V~~lLG~~d 245 (709)
T PRK08691 189 -----------HVLD----SEKIAYEPPALQLLGRAAAG----SMRDALSLLDQAIAL----GSGKVAENDVRQMIGAVD 245 (709)
T ss_pred -----------HHHH----HcCCCcCHHHHHHHHHHhCC----CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcccC
Confidence 1111 22578999999999988852 789999999776553 355788998888866543
No 49
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.5e-16 Score=141.25 Aligned_cols=173 Identities=18% Similarity=0.248 Sum_probs=111.3
Q ss_pred hHHHHhHhhhhcCCCCCCCccccChHHHHHHhhhhhccC------------CCCeeEEecCCCCChhHHHHHHHhccCcc
Q 017575 17 SVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDP------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.|.++-.+-.-...|...+++|.|..++++-|..+++-| ....+|++||||||||+|||+++..+.
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-- 270 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-- 270 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--
Confidence 455554444444555678999999999988887777521 123499999999999999999999884
Q ss_pred eeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc--
Q 017575 85 KVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA-- 162 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a-- 162 (369)
..|. +++......+.-| ....+..-++..|
T Consensus 271 -----tTFF---------------------------------NVSsstltSKwRG----------eSEKlvRlLFemARf 302 (491)
T KOG0738|consen 271 -----TTFF---------------------------------NVSSSTLTSKWRG----------ESEKLVRLLFEMARF 302 (491)
T ss_pred -----CeEE---------------------------------Eechhhhhhhhcc----------chHHHHHHHHHHHHH
Confidence 2221 1111100011111 1111111111111
Q ss_pred -CCCeEEEeCCCC------------CCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhc
Q 017575 163 -NRGILYVDEVNL------------LDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFG 229 (369)
Q Consensus 163 -~~~vl~lDE~~~------------l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~ 229 (369)
-|.++|||||+. .+..+.+.|+..|+.-. .+......+++++++| .+..|++||++||.
T Consensus 303 yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~-------~t~e~~k~VmVLAATN-~PWdiDEAlrRRlE 374 (491)
T KOG0738|consen 303 YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ-------GTLENSKVVMVLAATN-FPWDIDEALRRRLE 374 (491)
T ss_pred hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc-------cccccceeEEEEeccC-CCcchHHHHHHHHh
Confidence 478999999933 34458899999998522 2222234588999999 56789999999999
Q ss_pred cceeecCCCCHHHHHHHHH
Q 017575 230 MHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~ 248 (369)
-+|-++.| +.+.+..++.
T Consensus 375 KRIyIPLP-~~~~R~~Li~ 392 (491)
T KOG0738|consen 375 KRIYIPLP-DAEARSALIK 392 (491)
T ss_pred hheeeeCC-CHHHHHHHHH
Confidence 99999988 5666766655
No 50
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.69 E-value=4.3e-16 Score=148.87 Aligned_cols=221 Identities=22% Similarity=0.320 Sum_probs=124.0
Q ss_pred cccChHHHHHHhhhhhccC----------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcc
Q 017575 37 AIVGQEEMKLCLLLNVIDP----------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPE 100 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~----------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 100 (369)
.++||+.+++.+..++.+. ..++++|+||||||||++|++++..+. .+|......
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-------~pf~~id~~-- 142 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-------VPFAIADAT-- 142 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-------CCceecchh--
Confidence 3799999999888776210 234599999999999999999998873 333221110
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHH--
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH-- 178 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~-- 178 (369)
.+... + . .+...+.. +. .......+.+..+.++|+||||++++++.
T Consensus 143 ~l~~~--g----------------y----vG~d~e~~---------l~-~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~ 190 (412)
T PRK05342 143 TLTEA--G----------------Y----VGEDVENI---------LL-KLLQAADYDVEKAQRGIVYIDEIDKIARKSE 190 (412)
T ss_pred hcccC--C----------------c----ccchHHHH---------HH-HHHHhccccHHHcCCcEEEEechhhhccccC
Confidence 00000 0 0 00000000 00 00001123455677899999999988753
Q ss_pred ------------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC---C-------------------------
Q 017575 179 ------------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE---G------------------------- 218 (369)
Q Consensus 179 ------------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~---~------------------------- 218 (369)
+|+.|+++|+...+.++..|.......++.+|.|+|+.- +
T Consensus 191 ~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~ 270 (412)
T PRK05342 191 NPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVK 270 (412)
T ss_pred CCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccc
Confidence 899999999865555532222111124566677766510 0
Q ss_pred -----------------------CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHH
Q 017575 219 -----------------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQI 275 (369)
Q Consensus 219 -----------------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 275 (369)
.+.|+|+.|++..+.+.+. +.+...+|+... ... +.+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L-~~~~L~~Il~~~----------------~~~-l~~q~ 332 (412)
T PRK05342 271 SKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL-DEEALVRILTEP----------------KNA-LVKQY 332 (412)
T ss_pred cccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC-CHHHHHHHHHHH----------------HHH-HHHHH
Confidence 1345566666654455455 344444554421 011 12222
Q ss_pred HH-HHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 017575 276 AS-ARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAA 317 (369)
Q Consensus 276 ~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a 317 (369)
.+ .....-.+.++++++++|++.+...+. ++|.+..++.-.
T Consensus 333 ~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~-GAR~Lrriie~~ 374 (412)
T PRK05342 333 QKLFEMDGVELEFTDEALEAIAKKAIERKT-GARGLRSILEEI 374 (412)
T ss_pred HHHHHhCCcEEEECHHHHHHHHHhCCCCCC-CCchHHHHHHHH
Confidence 22 223334688999999999987544333 458777766544
No 51
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.7e-16 Score=152.57 Aligned_cols=254 Identities=15% Similarity=0.218 Sum_probs=156.1
Q ss_pred eeccchhhhhHHHHhHhhhhcCCCCCCCccccChHHHHHHhhhhhc-----cCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 8 VTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVI-----DPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~-----~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
|..-+..-.++.++++.++. +.||-+++++.+...+. ....|. +||+||||+|||+|++.||..+
T Consensus 304 W~~~sk~~~Dl~~a~~iLd~---------dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 304 WGKRSKDKLDLKKAEKILDK---------DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred CccccchhhhHHHHHHHhcc---------cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 44445555677777777765 35677778777755441 112344 9999999999999999999999
Q ss_pred CcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhh
Q 017575 82 PVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 161 (369)
. ..|.+++...-....++.+.- +++-| -.||.+.+
T Consensus 375 ~-------RkfvR~sLGGvrDEAEIRGHR----------------------------------RTYIG----amPGrIiQ 409 (782)
T COG0466 375 G-------RKFVRISLGGVRDEAEIRGHR----------------------------------RTYIG----AMPGKIIQ 409 (782)
T ss_pred C-------CCEEEEecCccccHHHhcccc----------------------------------ccccc----cCChHHHH
Confidence 4 444444333333333333210 00000 01444433
Q ss_pred ------cCCCeEEEeCCCCCCHH----HHHHHHHHHhcCCce-eeecceeeeec-CceEEEeecCCCCCCCCHhHHhhhc
Q 017575 162 ------ANRGILYVDEVNLLDDH----LVDVLLDSAASGWNT-VEREGISISHP-ARFILIGSGNPEEGELRPQLLDRFG 229 (369)
Q Consensus 162 ------a~~~vl~lDE~~~l~~~----~~~~L~~~l~~~~~~-~~~~~~~~~~~-~~~~li~t~n~~~~~l~~al~~R~~ 229 (369)
..+.+++|||++.+..+ --++|+++|+..+.. +.-+...+.++ ..++||+|+|-.. .++.||+||..
T Consensus 410 ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~-tIP~PLlDRME 488 (782)
T COG0466 410 GMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD-TIPAPLLDRME 488 (782)
T ss_pred HHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-cCChHHhccee
Confidence 26889999999777654 458999999854432 22111224444 3689999999543 49999999998
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHH-HHHHHcCCCCCc
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKIS-KVCAELNVDGLR 308 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~-~~~~~~~~~s~R 308 (369)
+ |.+... ..+....|++.. .+.+.+....-....+.++++++..|. .|+++.|+ |
T Consensus 489 i-I~lsgY-t~~EKl~IAk~~-------------------LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV---R 544 (782)
T COG0466 489 V-IRLSGY-TEDEKLEIAKRH-------------------LIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGV---R 544 (782)
T ss_pred e-eeecCC-ChHHHHHHHHHh-------------------cchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhh---h
Confidence 7 888877 566677776643 134444444444457999999998755 57777776 6
Q ss_pred hhHHHH-HHHHHHHH---HcCCC---CCCHHHHHHHHhH
Q 017575 309 GDIVSN-RAAKALAA---LKGRD---KVSAEDIATVMPN 340 (369)
Q Consensus 309 ~~~~ll-~~a~a~A~---l~~~~---~v~~~~i~~a~~~ 340 (369)
.+.+-+ +++|..+. ..... .|+..++.+-+..
T Consensus 545 ~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 545 NLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 654332 23333222 12222 3677778776653
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.1e-16 Score=153.18 Aligned_cols=237 Identities=17% Similarity=0.270 Sum_probs=142.9
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++++|. .|++++||+.+++.+.-++......| ++|.||+|+||||+|+.++..+.-..+....+|+. ...
T Consensus 5 ~KyRP~-~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~--------C~~ 75 (491)
T PRK14964 5 LKYRPS-SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT--------CHN 75 (491)
T ss_pred HHhCCC-CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc--------cHH
Confidence 445554 89999999999999987773222234 99999999999999999998763111000111111 000
Q ss_pred hhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
+.. +..+.. ..++.+... ...+. +...+... .+.+ ..++..++||||++++..+.++.|
T Consensus 76 C~~-i~~~~~-------~Dv~eidaas~~~vdd------IR~Iie~~--~~~P---~~~~~KVvIIDEah~Ls~~A~NaL 136 (491)
T PRK14964 76 CIS-IKNSNH-------PDVIEIDAASNTSVDD------IKVILENS--CYLP---ISSKFKVYIIDEVHMLSNSAFNAL 136 (491)
T ss_pred HHH-HhccCC-------CCEEEEecccCCCHHH------HHHHHHHH--Hhcc---ccCCceEEEEeChHhCCHHHHHHH
Confidence 000 000100 011111110 01111 11111111 0111 124567999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
++.|++ .|.+..+|++++ ...++...+.+||.. +.+.+++..+.. ..+.
T Consensus 137 LK~LEe-------------Pp~~v~fIlatt-e~~Kl~~tI~SRc~~-~~f~~l~~~el~-~~L~--------------- 185 (491)
T PRK14964 137 LKTLEE-------------PAPHVKFILATT-EVKKIPVTIISRCQR-FDLQKIPTDKLV-EHLV--------------- 185 (491)
T ss_pred HHHHhC-------------CCCCeEEEEEeC-ChHHHHHHHHHhhee-eecccccHHHHH-HHHH---------------
Confidence 999987 234555555555 234588999999976 888888543332 3322
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 264 YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
.+.. ...+.++++++.+|.+.+.. +.|.+.+++..+..++ + ..|+.+++++++..+..
T Consensus 186 ----------~ia~----~Egi~i~~eAL~lIa~~s~G----slR~alslLdqli~y~---~-~~It~e~V~~llg~~~~ 243 (491)
T PRK14964 186 ----------DIAK----KENIEHDEESLKLIAENSSG----SMRNALFLLEQAAIYS---N-NKISEKSVRDLLGCVDK 243 (491)
T ss_pred ----------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHccCCH
Confidence 1111 22578999999988888742 7798888887765432 2 47999999988765544
Q ss_pred c
Q 017575 344 H 344 (369)
Q Consensus 344 ~ 344 (369)
.
T Consensus 244 ~ 244 (491)
T PRK14964 244 H 244 (491)
T ss_pred H
Confidence 3
No 53
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=99.68 E-value=1.1e-15 Score=143.20 Aligned_cols=267 Identities=18% Similarity=0.250 Sum_probs=188.3
Q ss_pred ccccChHHHHHHhhhhhccCC----------CCe--eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPK----------IGG--VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~----------~g~--vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
..|+|..++++++.+-++... +|. +||.|.||+.||.|+|-+-...|-.-+..|.--.....+.....
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 368999999999988886321 333 99999999999999998877765322211111111000000000
Q ss_pred hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
...+.+..+..|.+..|++||+.|||++++..+-..++
T Consensus 411 ------------------------------------------D~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAI 448 (729)
T KOG0481|consen 411 ------------------------------------------DPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAI 448 (729)
T ss_pred ------------------------------------------cCCcceEEEecceEEEecCCEEEeehhhccCchhhhHH
Confidence 00112223345667779999999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCCC------------CCHhHHhhhccceeecCCCCHHHHHHHHHHhh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEGE------------LRPQLLDRFGMHAQVGTVRDAELRVKIVEERA 251 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~------------l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~ 251 (369)
.+.|++..+.+.+.|.+..++....++++.||.-+. +-+.+++||++.+.+....+.+....|.++-.
T Consensus 449 HEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 449 HEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred HHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 999999999999999999999999999999986532 44889999999888877766655556666544
Q ss_pred hccCC-ChHHHhh-----hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcC-----------------CCCCc
Q 017575 252 RFDKN-PKEFRDS-----YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELN-----------------VDGLR 308 (369)
Q Consensus 252 ~~~~~-~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~-----------------~~s~R 308 (369)
..+.. ...+... =....+.+.++|.-.+... ...+++++-+.|...+...+ + ++|
T Consensus 529 ~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc-~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPI-TVR 606 (729)
T KOG0481|consen 529 NVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKC-GPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPI-TVR 606 (729)
T ss_pred hhhccccccccCccccCCCcccHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCce-eHH
Confidence 44432 1111111 1224456777776666443 36889999888776543211 2 679
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 309 GDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 309 ~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
.+..+++.+.++|.++-+...+++|+++|+++...+-+
T Consensus 607 QLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vSTm 644 (729)
T KOG0481|consen 607 QLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVSTM 644 (729)
T ss_pred HHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhhH
Confidence 99999999999999999999999999999998766533
No 54
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=2.5e-16 Score=147.57 Aligned_cols=229 Identities=20% Similarity=0.168 Sum_probs=141.0
Q ss_pred CCccccChHHH----HHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcc--eeecCCCCCCCCCCcchhhhhhh
Q 017575 34 PFTAIVGQEEM----KLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVI--KVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 34 ~~~~i~G~~~~----~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
.+..++|.... ++++... .+..-+|||+|++|+||+.+|++|....... ..+.. |||..........+++
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~--ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~--~NCa~~~en~~~~eLF 151 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAY--APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIA--FNCAAYSENLQEAELF 151 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhh--CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEE--EEHHHhCcCHHHHHHh
Confidence 35667786543 4444442 1233349999999999999999999554331 11111 2222222222222233
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
+. .+..-.|...-++|.+.++++|+|||||++++|+..|..|+.+|
T Consensus 152 G~----------------------------------~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~l 197 (403)
T COG1221 152 GH----------------------------------EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVL 197 (403)
T ss_pred cc----------------------------------ccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHH
Confidence 21 11111233445689999999999999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCC-CCCH--hHHh-hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEG-ELRP--QLLD-RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~-~l~~--al~~-R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
+++.++- -|.....+.++.+|+++|.... .+-. .|.+ |+.+.|++|+.. +...+|+..-..
T Consensus 198 e~g~~~r--vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLr--ER~~Di~~L~e~----------- 262 (403)
T COG1221 198 EEGEYRR--VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLR--ERKEDILLLAEH----------- 262 (403)
T ss_pred HcCceEe--cCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChh--hchhhHHHHHHH-----------
Confidence 9987653 2556677789999999984322 1333 5666 556667777664 335555442111
Q ss_pred hHHHHHHHHHHHHHHHhhCCC-cccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCC
Q 017575 264 YKAEQAKLQQQIASARSSLPA-VQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRD 327 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~ 327 (369)
+.... ++..... ...++++.+.+..+....++ |.+.++++.+.+.+...+..
T Consensus 263 -------Fl~~~--~~~l~~~~~~~~~~a~~~L~~y~~pGNi---rELkN~Ve~~~~~~~~~~~~ 315 (403)
T COG1221 263 -------FLKSE--ARRLGLPLSVDSPEALRALLAYDWPGNI---RELKNLVERAVAQASGEGQD 315 (403)
T ss_pred -------HHHHH--HHHcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHHhccccCC
Confidence 11111 1112222 23345788888887765555 99999999999998765543
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=8.3e-16 Score=149.57 Aligned_cols=235 Identities=20% Similarity=0.348 Sum_probs=139.5
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
+..||. .|++++||+.++..+...+......| ++|+|||||||||+|++++..+.........+|... ..
T Consensus 6 ~kyRP~-~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c--------~~ 76 (472)
T PRK14962 6 RKYRPK-TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC--------RA 76 (472)
T ss_pred HHHCCC-CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc--------HH
Confidence 444554 89999999999888888774333335 899999999999999999998853211111122110 00
Q ss_pred hhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
... +..+... .+..+.. ....+.+- .+... ....+ ..++..++|+||++++....++.|
T Consensus 77 c~~-i~~g~~~-------dv~el~aa~~~gid~iR-------~i~~~-~~~~p---~~~~~kVvIIDE~h~Lt~~a~~~L 137 (472)
T PRK14962 77 CRS-IDEGTFM-------DVIELDAASNRGIDEIR-------KIRDA-VGYRP---MEGKYKVYIIDEVHMLTKEAFNAL 137 (472)
T ss_pred HHH-HhcCCCC-------ccEEEeCcccCCHHHHH-------HHHHH-HhhCh---hcCCeEEEEEEChHHhHHHHHHHH
Confidence 000 0000000 0000000 00000000 00000 00111 123567999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEe-ecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIG-SGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~-t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
+..|++. +..+.+|+ |+|| ..+.+++.+||.+ +.+.+++..+ ...++..
T Consensus 138 Lk~LE~p-------------~~~vv~Ilattn~--~kl~~~L~SR~~v-v~f~~l~~~e-l~~~L~~------------- 187 (472)
T PRK14962 138 LKTLEEP-------------PSHVVFVLATTNL--EKVPPTIISRCQV-IEFRNISDEL-IIKRLQE------------- 187 (472)
T ss_pred HHHHHhC-------------CCcEEEEEEeCCh--HhhhHHHhcCcEE-EEECCccHHH-HHHHHHH-------------
Confidence 9999861 23444444 4444 3689999999975 8888885443 3333331
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
+.. ...+.++++++.+|.+.+.. +.|.+.+.+..+... .+ ..|+.++++.++....
T Consensus 188 ------------i~~----~egi~i~~eal~~Ia~~s~G----dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~~~~ 243 (472)
T PRK14962 188 ------------VAE----AEGIEIDREALSFIAKRASG----GLRDALTMLEQVWKF---SE-GKITLETVHEALGLIP 243 (472)
T ss_pred ------------HHH----HcCCCCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHcCCC
Confidence 111 22578999999998886642 678888888764432 22 3499999998876544
Q ss_pred c
Q 017575 343 R 343 (369)
Q Consensus 343 ~ 343 (369)
.
T Consensus 244 ~ 244 (472)
T PRK14962 244 I 244 (472)
T ss_pred H
Confidence 3
No 56
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.67 E-value=3.3e-15 Score=149.32 Aligned_cols=284 Identities=22% Similarity=0.295 Sum_probs=172.3
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcce----ee-cC--CCCCC----C-
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VV-VG--DPYNS----D- 95 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~----~~-~~--~~~~~----~- 95 (369)
...|+..+++++||+++++.+..++. .+.+++|+|||||||||++++++..++... .+ .. ..+.. .
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~--~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~~~~~~~v~ 100 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAK--QRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVP 100 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcchHHHHHHHH
Confidence 34466689999999999999998874 334599999999999999999999987542 00 00 00000 0
Q ss_pred -CCC-------------cchhhh-----hhhh----hhhccccchh--------------------hh----h-------
Q 017575 96 -PED-------------PEAMGI-----EVRE----SVVKGEELSI--------------------TF----S------- 121 (369)
Q Consensus 96 -~~~-------------~~~~~~-----~~~~----~~~~~~~~~~--------------------~~----~------- 121 (369)
... ....+. -+.. .|-....+.+ .. +
T Consensus 101 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~~ 180 (637)
T PRK13765 101 AGKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADKK 180 (637)
T ss_pred HhcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCCC
Confidence 000 000000 0000 0000000000 00 0
Q ss_pred ccccccCCCCCchHhhhcccchhHH----h-hhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeee
Q 017575 122 KINMVDLPLGATEDRVCGTIDIEKA----L-TEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVER 196 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~ 196 (369)
..|++ .....+...++|.+..... + .+......+|.+.+|++|+|||||++.+++..|..|+++|+++.+.+..
T Consensus 181 ~aPvi-~~~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g 259 (637)
T PRK13765 181 TAPFV-DATGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITG 259 (637)
T ss_pred CCCEE-EeCCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecc
Confidence 00011 0011234567776653311 1 2233345799999999999999999999999999999999998876631
Q ss_pred c-----c---eeeeecCceEEEeecCCCC-CCCCHhHHhhhc---cceeecCC--CCHHHHHHHHHHhhhccCCChHHHh
Q 017575 197 E-----G---ISISHPARFILIGSGNPEE-GELRPQLLDRFG---MHAQVGTV--RDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 197 ~-----~---~~~~~~~~~~li~t~n~~~-~~l~~al~~R~~---~~i~~~~~--~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
. + .....|.++.+|+++|+.. ..++++|.+||. +.+.++.- ...+....+
T Consensus 260 ~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~---------------- 323 (637)
T PRK13765 260 QSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKL---------------- 323 (637)
T ss_pred cccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHH----------------
Confidence 1 0 0234566889999999753 347899999996 44444321 122222222
Q ss_pred hhHHHHHHHHHHHHHHHhh-CCCcccCHHHHHHHHHHHHH-cCCC-----CCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSS-LPAVQIDHDLKVKISKVCAE-LNVD-----GLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~l~~~~~~-~~~~-----s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
...+.+.... .....++++++..|.+++.+ .|.. ..|.+..+++.|...|...+++.|+.+|+.
T Consensus 324 ---------~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~ 394 (637)
T PRK13765 324 ---------VRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVL 394 (637)
T ss_pred ---------HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHH
Confidence 1222222211 12357999999987776653 3321 246788899999999999999999999998
Q ss_pred HHHh
Q 017575 336 TVMP 339 (369)
Q Consensus 336 ~a~~ 339 (369)
.|..
T Consensus 395 ~a~~ 398 (637)
T PRK13765 395 EAKK 398 (637)
T ss_pred HHHH
Confidence 8874
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.2e-15 Score=149.04 Aligned_cols=243 Identities=15% Similarity=0.217 Sum_probs=144.8
Q ss_pred CCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
++..|.+++||+.++..+..++......| ++|+||+|+||||+|++++..+.-.....+.+.. .++.....+...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~----~~C~~C~~C~~i 91 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI----KTCEQCTNCISF 91 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc----CCCCCChHHHHH
Confidence 44489999999999999888774222223 9999999999999999999988532110000000 000000000000
Q ss_pred hhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 110 VVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
..+.. ..+..+.. ....+.+... +..-. .. + ..++..|+||||+++++...++.|+..|
T Consensus 92 -~~~~h-------~Dv~eidaas~~~vd~Ir~i------ie~a~--~~--P-~~~~~KVvIIDEa~~Ls~~a~naLLk~L 152 (507)
T PRK06645 92 -NNHNH-------PDIIEIDAASKTSVDDIRRI------IESAE--YK--P-LQGKHKIFIIDEVHMLSKGAFNALLKTL 152 (507)
T ss_pred -hcCCC-------CcEEEeeccCCCCHHHHHHH------HHHHH--hc--c-ccCCcEEEEEEChhhcCHHHHHHHHHHH
Confidence 00000 00111110 0111111111 11100 11 1 1245679999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAE 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 267 (369)
++ .+.++.+|++++. ...+++++.+||.. +.+.+++. +....++..
T Consensus 153 Ee-------------pp~~~vfI~aTte-~~kI~~tI~SRc~~-~ef~~ls~-~el~~~L~~------------------ 198 (507)
T PRK06645 153 EE-------------PPPHIIFIFATTE-VQKIPATIISRCQR-YDLRRLSF-EEIFKLLEY------------------ 198 (507)
T ss_pred hh-------------cCCCEEEEEEeCC-hHHhhHHHHhcceE-EEccCCCH-HHHHHHHHH------------------
Confidence 86 2345555555552 34589999999964 88888853 433344331
Q ss_pred HHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 268 QAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
+.+ ...+.++++++.+|...+. . +.|.+.+++..+.+++... ...|+.++|++++..+...++
T Consensus 199 -------i~~----~egi~ie~eAL~~Ia~~s~---G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~~~~~~i 261 (507)
T PRK06645 199 -------ITK----QENLKTDIEALRIIAYKSE---G-SARDAVSILDQAASMSAKS-DNIISPQVINQMLGLVDSSVI 261 (507)
T ss_pred -------HHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCCCCHHHH
Confidence 111 2257889999988887664 2 7899999998876654322 336999999988776665544
No 58
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2e-15 Score=149.22 Aligned_cols=234 Identities=18% Similarity=0.282 Sum_probs=140.9
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.+++.+...+......| ++|+||+|+||||+|++++..+.-.......+|.. | .
T Consensus 7 ~~k~rP~-~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~----C----~ 77 (527)
T PRK14969 7 ARKWRPK-SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV----C----S 77 (527)
T ss_pred HHHhCCC-cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC----C----H
Confidence 3445554 89999999999999988885434446 89999999999999999998884221111112211 0 0
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.. +..+... .++.+.. ....+.+- ..+..- ...+ ..++..|+||||+++++...++.
T Consensus 78 ~C~~-i~~~~~~-------d~~ei~~~~~~~vd~ir------~l~~~~--~~~p---~~~~~kVvIIDEad~ls~~a~na 138 (527)
T PRK14969 78 ACLE-IDSGRFV-------DLIEVDAASNTQVDAMR------ELLDNA--QYAP---TRGRFKVYIIDEVHMLSKSAFNA 138 (527)
T ss_pred HHHH-HhcCCCC-------ceeEeeccccCCHHHHH------HHHHHH--hhCc---ccCCceEEEEcCcccCCHHHHHH
Confidence 0000 0001000 0000100 00111110 000100 1111 12346699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .|.++.+|++++. +..+...+++||.. +.+.+++..+ ....+.
T Consensus 139 LLK~LEe-------------pp~~~~fIL~t~d-~~kil~tI~SRc~~-~~f~~l~~~~-i~~~L~-------------- 188 (527)
T PRK14969 139 MLKTLEE-------------PPEHVKFILATTD-PQKIPVTVLSRCLQ-FNLKQMPPPL-IVSHLQ-------------- 188 (527)
T ss_pred HHHHHhC-------------CCCCEEEEEEeCC-hhhCchhHHHHHHH-HhcCCCCHHH-HHHHHH--------------
Confidence 9999987 2345555555542 34577789999975 9998885433 222222
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
++.. ...+.++++++..|...+.. +.|.+.+++..+.+. +...|+.+++..++..
T Consensus 189 -----------~il~----~egi~~~~~al~~la~~s~G----slr~al~lldqai~~----~~~~I~~~~v~~~~~~ 243 (527)
T PRK14969 189 -----------HILE----QENIPFDATALQLLARAAAG----SMRDALSLLDQAIAY----GGGTVNESEVRAMLGA 243 (527)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHCC
Confidence 1111 12477899998888887642 679999988776443 4667999999887763
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.66 E-value=1.7e-15 Score=144.98 Aligned_cols=223 Identities=19% Similarity=0.245 Sum_probs=140.3
Q ss_pred CCCCCCccccChHHHHHHhhhhhc----c---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI----D---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~----~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...++++.|.++.++.+...+. . ....+++|+||||||||++|++++..+. .++..+
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-------~~~i~v- 196 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-------ATFIRV- 196 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-------CCEEEe-
Confidence 345678889998877666654431 1 1223499999999999999999998874 111110
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchh---hhcCCCeEEEeCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL---AKANRGILYVDEVN 173 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~---~~a~~~vl~lDE~~ 173 (369)
. ..++... ..|. + .......+ ....|+++||||++
T Consensus 197 -~----~~~l~~~---------------------------~~g~---------~-~~~i~~~f~~a~~~~p~IlfiDEiD 234 (389)
T PRK03992 197 -V----GSELVQK---------------------------FIGE---------G-ARLVRELFELAREKAPSIIFIDEID 234 (389)
T ss_pred -e----hHHHhHh---------------------------hccc---------h-HHHHHHHHHHHHhcCCeEEEEechh
Confidence 0 0000000 0000 0 00000111 12357899999997
Q ss_pred CC-----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 174 LL-----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 174 ~l-----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
.+ +.+++..+.+++.+-. + .....++.+|+|+|.. ..+++++++ ||+..+.++.| +.
T Consensus 235 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~--~~~~~~v~VI~aTn~~-~~ld~allRpgRfd~~I~v~~P-~~ 304 (389)
T PRK03992 235 AIAAKRTDSGTSGDREVQRTLMQLLAEMD------G--FDPRGNVKIIAATNRI-DILDPAILRPGRFDRIIEVPLP-DE 304 (389)
T ss_pred hhhcccccCCCCccHHHHHHHHHHHHhcc------c--cCCCCCEEEEEecCCh-hhCCHHHcCCccCceEEEECCC-CH
Confidence 65 4567777777775411 1 1112367899999954 469999997 99998999999 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCH-HHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDH-DLKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+.... ....++. ..+..++..+. |. |.+.+..+++.|..
T Consensus 305 ~~R~~Il~~~~-------------------------------~~~~~~~~~~~~~la~~t~--g~-sgadl~~l~~eA~~ 350 (389)
T PRK03992 305 EGRLEILKIHT-------------------------------RKMNLADDVDLEELAELTE--GA-SGADLKAICTEAGM 350 (389)
T ss_pred HHHHHHHHHHh-------------------------------ccCCCCCcCCHHHHHHHcC--CC-CHHHHHHHHHHHHH
Confidence 77777765221 1122221 11333444332 45 77899999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
.|..+++..|+.+|+.+|+..+...+-
T Consensus 351 ~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 351 FAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 999999999999999999998876544
No 60
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.3e-15 Score=151.53 Aligned_cols=240 Identities=16% Similarity=0.288 Sum_probs=140.7
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++++| .+|++++||+.++..+.-.+......| ++|+||+|+||||+++++++.+.-.... + .......++....
T Consensus 7 a~KyRP-~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~-~--~~~~~~~pCg~C~ 82 (618)
T PRK14951 7 ARKYRP-RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD-G--QGGITATPCGVCQ 82 (618)
T ss_pred HHHHCC-CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcc-c--ccCCCCCCCCccH
Confidence 344555 489999999999999988884333345 7999999999999999999888411000 0 0000000111111
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.. +..+...+ ++.+... ...+. +...+.. ..+.+ ..++..|++|||++++....++.
T Consensus 83 ~C~~-i~~g~h~D-------~~eldaas~~~Vd~------iReli~~--~~~~p---~~g~~KV~IIDEvh~Ls~~a~Na 143 (618)
T PRK14951 83 ACRD-IDSGRFVD-------YTELDAASNRGVDE------VQQLLEQ--AVYKP---VQGRFKVFMIDEVHMLTNTAFNA 143 (618)
T ss_pred HHHH-HHcCCCCc-------eeecCcccccCHHH------HHHHHHH--HHhCc---ccCCceEEEEEChhhCCHHHHHH
Confidence 1111 11111100 1111100 00111 1111111 01111 11345699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .|.++.+|++++ ++..+...+++||.. +++.+++..+ ....+.
T Consensus 144 LLKtLEE-------------PP~~~~fIL~Tt-d~~kil~TIlSRc~~-~~f~~Ls~ee-i~~~L~-------------- 193 (618)
T PRK14951 144 MLKTLEE-------------PPEYLKFVLATT-DPQKVPVTVLSRCLQ-FNLRPMAPET-VLEHLT-------------- 193 (618)
T ss_pred HHHhccc-------------CCCCeEEEEEEC-CchhhhHHHHHhcee-eecCCCCHHH-HHHHHH--------------
Confidence 9999986 234555555554 234578889999965 9998885433 323322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
++.. ...+.++++++.+|...+.. +.|.+.+++..+.+. +...|+.++|++++...
T Consensus 194 -----------~i~~----~egi~ie~~AL~~La~~s~G----slR~al~lLdq~ia~----~~~~It~~~V~~~Lg~~ 249 (618)
T PRK14951 194 -----------QVLA----AENVPAEPQALRLLARAARG----SMRDALSLTDQAIAF----GSGQLQEAAVRQMLGSV 249 (618)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcCC
Confidence 1111 22578899999998887652 779998887654433 34568988888876543
No 61
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.66 E-value=4.8e-15 Score=140.91 Aligned_cols=263 Identities=22% Similarity=0.290 Sum_probs=187.8
Q ss_pred ccccChHHHHHHhhhhhccC----------CCCe--eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDP----------KIGG--VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~----------~~g~--vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
..|+|.+.++++|.+-++.. -+|. +|++|.|.+.||.|+|.+....+-.=...|.-
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRG------------ 368 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRG------------ 368 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCC------------
Confidence 46899999999999888521 1233 99999999999999999988775220000000
Q ss_pred hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
-..+++ ...-..|. ..|++.+..|....|+.||+.|||+++++.--..++
T Consensus 369 ---------------------SSGVGL-----TAAVTtD~----eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAI 418 (818)
T KOG0479|consen 369 ---------------------SSGVGL-----TAAVTTDQ----ETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAI 418 (818)
T ss_pred ---------------------CCCccc-----eeEEeecc----ccchhhhhcCceEEccCceEEehhcccccchhHHHH
Confidence 000000 00001111 457777778888889999999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHHHhh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERA 251 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~ 251 (369)
.++|+++.+++.+.|.-.++++.+.++++.||..+ .++..|++||++-+.+-.-.+.+....|-.+.-
T Consensus 419 HEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 419 HEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred HHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999764 288999999988555443334555545544433
Q ss_pred hccC---CC---------------------h-----HHHhhhH--------------HHHHHHHHHHHHHHhhCCCcccC
Q 017575 252 RFDK---NP---------------------K-----EFRDSYK--------------AEQAKLQQQIASARSSLPAVQID 288 (369)
Q Consensus 252 ~~~~---~~---------------------~-----~~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~i~ 288 (369)
..+. +. + +..++|. -...+++++|.-+++... ..++
T Consensus 499 RmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~-P~Lt 577 (818)
T KOG0479|consen 499 RMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIK-PKLT 577 (818)
T ss_pred HHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcC-cccc
Confidence 2221 00 0 0111121 133568899988887664 4889
Q ss_pred HHHHHHHHHHHHHcCCC------------CCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 289 HDLKVKISKVCAELNVD------------GLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 289 ~~~~~~l~~~~~~~~~~------------s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
+++..+|++.+..++-. ++|.+..++++|.|+|..+-++.|+.+|-++|+.++
T Consensus 578 ~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 578 QEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 99999999877654321 678999999999999999999999999998886653
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.8e-15 Score=148.75 Aligned_cols=234 Identities=17% Similarity=0.240 Sum_probs=140.1
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.++..+...+......| ++|+||+|+||||+|+.++..+.........+|+. ..
T Consensus 7 a~KyRP~-~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~--------C~ 77 (546)
T PRK14957 7 ARKYRPQ-SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK--------CE 77 (546)
T ss_pred HHHHCcC-cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc--------cH
Confidence 3445554 89999999999998888874323335 89999999999999999999874221111112211 00
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.. +..+... .++.+.. ....+.+ ...+..- ... ...++..|+||||+++++...++.
T Consensus 78 sC~~-i~~~~~~-------dlieidaas~~gvd~i------r~ii~~~--~~~---p~~g~~kViIIDEa~~ls~~a~na 138 (546)
T PRK14957 78 NCVA-INNNSFI-------DLIEIDAASRTGVEET------KEILDNI--QYM---PSQGRYKVYLIDEVHMLSKQSFNA 138 (546)
T ss_pred HHHH-HhcCCCC-------ceEEeecccccCHHHH------HHHHHHH--Hhh---hhcCCcEEEEEechhhccHHHHHH
Confidence 0000 0000000 0000000 0000000 0000000 000 112356799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++. |....+|++++ ....+..++++||.. +.+.+++..+ ....+.
T Consensus 139 LLK~LEep-------------p~~v~fIL~Tt-d~~kil~tI~SRc~~-~~f~~Ls~~e-I~~~L~-------------- 188 (546)
T PRK14957 139 LLKTLEEP-------------PEYVKFILATT-DYHKIPVTILSRCIQ-LHLKHISQAD-IKDQLK-------------- 188 (546)
T ss_pred HHHHHhcC-------------CCCceEEEEEC-ChhhhhhhHHHheee-EEeCCCCHHH-HHHHHH--------------
Confidence 99999972 33444555444 245578889999976 9999885433 322322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
++... ..+.++++++.+|...+.. +.|.+.+++..+.+. .+ ..|+.+++++++..
T Consensus 189 -----------~il~~----egi~~e~~Al~~Ia~~s~G----dlR~alnlLek~i~~---~~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 189 -----------IILAK----ENINSDEQSLEYIAYHAKG----SLRDALSLLDQAISF---CG-GELKQAQIKQMLGI 243 (546)
T ss_pred -----------HHHHH----cCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh---cc-CCCCHHHHHHHHcc
Confidence 11111 2478899999988888742 679998988876543 22 56899999887654
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=6.7e-15 Score=137.68 Aligned_cols=215 Identities=17% Similarity=0.168 Sum_probs=129.4
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhh
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
+++|. .|++++|+.+++..+...+......|++|+||||||||+++++++..+..... .......+.. +..
T Consensus 6 kyrP~-~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~----~~~~~eln~s----d~~ 76 (319)
T PLN03025 6 KYRPT-KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY----KEAVLELNAS----DDR 76 (319)
T ss_pred hcCCC-CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC----ccceeeeccc----ccc
Confidence 34444 89999999999888776553223335999999999999999999988731100 0000000000 000
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
..+.+... ...+....... ...+..+++|||++.+....++.|+..|
T Consensus 77 -------------------------~~~~vr~~---i~~~~~~~~~~-----~~~~~kviiiDE~d~lt~~aq~aL~~~l 123 (319)
T PLN03025 77 -------------------------GIDVVRNK---IKMFAQKKVTL-----PPGRHKIVILDEADSMTSGAQQALRRTM 123 (319)
T ss_pred -------------------------cHHHHHHH---HHHHHhccccC-----CCCCeEEEEEechhhcCHHHHHHHHHHH
Confidence 00000000 00000000000 1123569999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAE 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 267 (369)
+. + +....++.++|.. ..+.+++.+||.. +.+.+++..+ ....+.
T Consensus 124 E~----~---------~~~t~~il~~n~~-~~i~~~L~SRc~~-i~f~~l~~~~-l~~~L~------------------- 168 (319)
T PLN03025 124 EI----Y---------SNTTRFALACNTS-SKIIEPIQSRCAI-VRFSRLSDQE-ILGRLM------------------- 168 (319)
T ss_pred hc----c---------cCCceEEEEeCCc-cccchhHHHhhhc-ccCCCCCHHH-HHHHHH-------------------
Confidence 75 1 2233456667743 3588999999975 8888885443 333322
Q ss_pred HHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 268 QAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
++.+ .+.+.++++++.+|...+.. +.|.+.+.++.+. .+...|+.+++.+..
T Consensus 169 ------~i~~----~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~~-----~~~~~i~~~~v~~~~ 220 (319)
T PLN03025 169 ------KVVE----AEKVPYVPEGLEAIIFTADG----DMRQALNNLQATH-----SGFGFVNQENVFKVC 220 (319)
T ss_pred ------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHH-----hcCCCCCHHHHHHHc
Confidence 1122 23678999999888877642 6798888887332 134467777776543
No 64
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.65 E-value=3.9e-15 Score=141.56 Aligned_cols=223 Identities=22% Similarity=0.319 Sum_probs=127.6
Q ss_pred cccChHHHHHHhhhhhc-----------cC-------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCC
Q 017575 37 AIVGQEEMKLCLLLNVI-----------DP-------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPED 98 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~-----------~~-------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 98 (369)
.++||+++++.+..++. .+ ..++++|+||||||||++|++++..+. .+|.....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-------~pf~~~da- 149 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-------VPFAIADA- 149 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-------CCeEEech-
Confidence 36899999999987761 00 124699999999999999999998873 22211100
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH-
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 177 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~- 177 (369)
..+.. ..+.|. +....+.. .....++.+..+.++++||||++++.+
T Consensus 150 -~~L~~------------------------------~gyvG~-d~e~~L~~-~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 150 -TTLTE------------------------------AGYVGE-DVENILLK-LLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred -hhccc------------------------------cccccc-cHHHHHHH-HHHhCcccHHhcccceEEecccchhchh
Confidence 00000 000000 00000000 001123445567789999999998877
Q ss_pred -------------HHHHHHHHHHhcCCce-eee-cceeeeecCceEEEeecCCC---CC---------------------
Q 017575 178 -------------HLVDVLLDSAASGWNT-VER-EGISISHPARFILIGSGNPE---EG--------------------- 218 (369)
Q Consensus 178 -------------~~~~~L~~~l~~~~~~-~~~-~~~~~~~~~~~~li~t~n~~---~~--------------------- 218 (369)
.+|+.|+++|+ |.++ +.. .|..+.+ .++.+|.|+|.. .+
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~-~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~ 274 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPY-QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFG 274 (413)
T ss_pred hccccccccccchhHHHHHHHHhh-ccceecccCCCccccC-CCeEEEEcCCceeeecccccChHHHHHHHhhhcccccc
Confidence 69999999996 5443 222 2332222 467777887751 00
Q ss_pred -------------------------CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHH
Q 017575 219 -------------------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQ 273 (369)
Q Consensus 219 -------------------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (369)
.+.|+|+.|++..+.+.+. +.+...+|+.... ..+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL-~~~~L~~Il~~~~-----------------n~l~k 336 (413)
T TIGR00382 275 AEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL-DEEALIAILTKPK-----------------NALVK 336 (413)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC-CHHHHHHHHHHHH-----------------HHHHH
Confidence 1446666777664555555 4555556654210 01222
Q ss_pred HHHHH-HhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 274 QIASA-RSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 274 ~i~~~-~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
++.+. ....-.+.++++++++|++.+..... ++|.+..++...-.-+
T Consensus 337 q~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~-GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 337 QYQALFKMDNVELDFEEEALKAIAKKALERKT-GARGLRSIVEGLLLDV 384 (413)
T ss_pred HHHHHhccCCeEEEECHHHHHHHHHhCCCCCC-CchHHHHHHHHhhHHH
Confidence 22222 22233588899999999987655444 5688877776654433
No 65
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.7e-16 Score=145.16 Aligned_cols=215 Identities=24% Similarity=0.297 Sum_probs=132.7
Q ss_pred CCccccChHHHHHHhhhhh---ccC-----CCC----eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch
Q 017575 34 PFTAIVGQEEMKLCLLLNV---IDP-----KIG----GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA 101 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l---~~~-----~~g----~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 101 (369)
.|+++-|-++++..+..-+ .+| -+| +|||+||||||||.|||++|+.. +.+|....+.
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-------~VPFF~~sGS--- 371 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-------GVPFFYASGS--- 371 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-------CCCeEecccc---
Confidence 5888999887765553332 221 122 39999999999999999999998 3554332110
Q ss_pred hhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---CCCeEEEeCCCCCCH-
Q 017575 102 MGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVNLLDD- 177 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~~~vl~lDE~~~l~~- 177 (369)
.+ ++.+ .|-..+....++..| -|+|+||||++....
T Consensus 372 -------------EF------------------dEm~---------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~k 411 (752)
T KOG0734|consen 372 -------------EF------------------DEMF---------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGK 411 (752)
T ss_pred -------------ch------------------hhhh---------hcccHHHHHHHHHHHHhcCCeEEEEechhhhccc
Confidence 00 0000 010001111122222 489999999954322
Q ss_pred -------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHHHHHH
Q 017575 178 -------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 178 -------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~~il~ 248 (369)
.....|.++|-+ + +| .+.+..+.+|+++|- +..+++||.+ ||+.+|.++.| +...+..|+.
T Consensus 412 R~~~~~~y~kqTlNQLLvE----m--DG--F~qNeGiIvigATNf-pe~LD~AL~RPGRFD~~v~Vp~P-Dv~GR~eIL~ 481 (752)
T KOG0734|consen 412 RNPSDQHYAKQTLNQLLVE----M--DG--FKQNEGIIVIGATNF-PEALDKALTRPGRFDRHVTVPLP-DVRGRTEILK 481 (752)
T ss_pred CCccHHHHHHHHHHHHHHH----h--cC--cCcCCceEEEeccCC-hhhhhHHhcCCCccceeEecCCC-CcccHHHHHH
Confidence 233444444432 1 12 234568999999994 4459999998 99999999999 5566767766
Q ss_pred HhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHHHHHcCCC
Q 017575 249 ERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE-LNVDGLRGDIVSNRAAKALAALKGRD 327 (369)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~s~R~~~~ll~~a~a~A~l~~~~ 327 (369)
.. ..++..++++-. .-+++. -|+ |.-.+.+++-+|.-.|..+|..
T Consensus 482 ~y-------------------------------l~ki~~~~~VD~--~iiARGT~GF-sGAdLaNlVNqAAlkAa~dga~ 527 (752)
T KOG0734|consen 482 LY-------------------------------LSKIPLDEDVDP--KIIARGTPGF-SGADLANLVNQAALKAAVDGAE 527 (752)
T ss_pred HH-------------------------------HhcCCcccCCCH--hHhccCCCCC-chHHHHHHHHHHHHHHHhcCcc
Confidence 32 112233322211 112332 244 5578899999999999999999
Q ss_pred CCCHHHHHHHHhHHh
Q 017575 328 KVSAEDIATVMPNCL 342 (369)
Q Consensus 328 ~v~~~~i~~a~~~vl 342 (369)
.|+..|++.|=..++
T Consensus 528 ~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 528 MVTMKHLEFAKDRIL 542 (752)
T ss_pred cccHHHHhhhhhhee
Confidence 999999998855443
No 66
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.64 E-value=6.5e-15 Score=130.74 Aligned_cols=208 Identities=20% Similarity=0.221 Sum_probs=127.4
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
++++|. .|.++.||+.++..+.-++.....-++|++||||||||+.++++++.+.....+ ++.....+. ++-
T Consensus 28 eKYrPk-t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~---~~rvl~lna----Sde 99 (346)
T KOG0989|consen 28 EKYRPK-TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLF---PCRVLELNA----SDE 99 (346)
T ss_pred HHhCCC-cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCcccc---ccchhhhcc----ccc
Confidence 344444 799999999999999999853122239999999999999999999998532110 000000000 000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcc-cccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGV-KAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
. |.. ...+++.. +........ ....+.+ ...|++|||.+.+..+.|.+|+.
T Consensus 100 r-----Gis----------------vvr~Kik~---fakl~~~~~~~~~~~~~----~fKiiIlDEcdsmtsdaq~aLrr 151 (346)
T KOG0989|consen 100 R-----GIS----------------VVREKIKN---FAKLTVLLKRSDGYPCP----PFKIIILDECDSMTSDAQAALRR 151 (346)
T ss_pred c-----ccc----------------chhhhhcC---HHHHhhccccccCCCCC----cceEEEEechhhhhHHHHHHHHH
Confidence 0 000 00000000 000000110 0001111 12599999999999999999999
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYK 265 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 265 (369)
.|++. +....||+.+| ....+.+++.+||.- +.+.+..+.....++
T Consensus 152 ~mE~~-------------s~~trFiLIcn-ylsrii~pi~SRC~K-frFk~L~d~~iv~rL------------------- 197 (346)
T KOG0989|consen 152 TMEDF-------------SRTTRFILICN-YLSRIIRPLVSRCQK-FRFKKLKDEDIVDRL------------------- 197 (346)
T ss_pred HHhcc-------------ccceEEEEEcC-ChhhCChHHHhhHHH-hcCCCcchHHHHHHH-------------------
Confidence 99961 23445566666 234599999999975 888887554433222
Q ss_pred HHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 266 AEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.|.. .+.+.++++++++|+.++.. +.|.++..++.+.-
T Consensus 198 -------~~Ia~----~E~v~~d~~al~~I~~~S~G----dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 198 -------EKIAS----KEGVDIDDDALKLIAKISDG----DLRRAITTLQSLSL 236 (346)
T ss_pred -------HHHHH----HhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHhhc
Confidence 12333 33799999999999998853 77888887766543
No 67
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.64 E-value=4.7e-15 Score=141.48 Aligned_cols=224 Identities=19% Similarity=0.259 Sum_probs=135.5
Q ss_pred CCCCCCCccccChHHHHHHhhhhhc----c---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVI----D---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSD 95 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~----~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 95 (369)
..|...|+++.|.+..++.+...+. . ....+++|+||||||||++++++++.+.. ++...
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i 210 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV 210 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 3456689999998777665544431 1 11234999999999999999999998741 11110
Q ss_pred CCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC
Q 017575 96 PEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l 175 (369)
. .+.+...+ .+.....+. .. + .......|.|+||||++.+
T Consensus 211 ~------~s~l~~k~-------------------~ge~~~~lr------~l-------f--~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 211 V------GSEFVQKY-------------------LGEGPRMVR------DV-------F--RLARENAPSIIFIDEVDSI 250 (398)
T ss_pred e------hHHHHHHh-------------------cchhHHHHH------HH-------H--HHHHhcCCeEEEEECHhhh
Confidence 0 00000000 000000000 00 0 0011235889999998644
Q ss_pred -----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHH
Q 017575 176 -----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAEL 242 (369)
Q Consensus 176 -----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~ 242 (369)
+...+..+.+++..-. + .....++.+|+|+|. +..+++++++ ||+..|.++.| +.+.
T Consensus 251 ~~~r~~~~~~~d~~~~r~l~~LL~~ld------~--~~~~~~v~VI~aTN~-~d~LDpAllR~GRfd~~I~~~~P-~~~~ 320 (398)
T PTZ00454 251 ATKRFDAQTGADREVQRILLELLNQMD------G--FDQTTNVKVIMATNR-ADTLDPALLRPGRLDRKIEFPLP-DRRQ 320 (398)
T ss_pred ccccccccCCccHHHHHHHHHHHHHhh------c--cCCCCCEEEEEecCC-chhCCHHHcCCCcccEEEEeCCc-CHHH
Confidence 3345556666655310 1 111235778889995 3469999998 99999999988 5666
Q ss_pred HHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHHH
Q 017575 243 RVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE-LNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 243 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~s~R~~~~ll~~a~a~A 321 (369)
+..|+.... . ...++.++ .+.+++.. .|. |.+.+..++.-|...|
T Consensus 321 R~~Il~~~~-------------------------~------~~~l~~dv--d~~~la~~t~g~-sgaDI~~l~~eA~~~A 366 (398)
T PTZ00454 321 KRLIFQTIT-------------------------S------KMNLSEEV--DLEDFVSRPEKI-SAADIAAICQEAGMQA 366 (398)
T ss_pred HHHHHHHHH-------------------------h------cCCCCccc--CHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 666655211 0 11122111 02223332 355 7899999999999999
Q ss_pred HHcCCCCCCHHHHHHHHhHHhc
Q 017575 322 ALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 322 ~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
..+++..|+.+|+.+|+..+..
T Consensus 367 ~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 367 VRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHcCCCccCHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 68
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.3e-15 Score=147.97 Aligned_cols=235 Identities=21% Similarity=0.335 Sum_probs=141.7
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
+.++.+|. .|++++||+.+++.+.-.+.....+| +||+||+|+|||++|+.++..+.-.....+.+|+...
T Consensus 6 l~~k~rP~-~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~------- 77 (559)
T PRK05563 6 LYRKWRPQ-TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE------- 77 (559)
T ss_pred HHHHhCCC-cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH-------
Confidence 34555565 89999999999998888875434456 8999999999999999999887422111122332211
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
.+.. +..+... +++.+... ...+.+- . +... ..+.+ ..++..|+||||++++....++
T Consensus 78 -~C~~-i~~g~~~-------dv~eidaas~~~vd~ir------~-i~~~-v~~~p---~~~~~kViIIDE~~~Lt~~a~n 137 (559)
T PRK05563 78 -ICKA-ITNGSLM-------DVIEIDAASNNGVDEIR------D-IRDK-VKYAP---SEAKYKVYIIDEVHMLSTGAFN 137 (559)
T ss_pred -HHHH-HhcCCCC-------CeEEeeccccCCHHHHH------H-HHHH-HhhCc---ccCCeEEEEEECcccCCHHHHH
Confidence 1111 0111000 01111000 0000000 0 0000 01111 1345679999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|++.|++ .|.++.+|++++ .+..+.+++.+||.. +.+.+++. +....++.
T Consensus 138 aLLKtLEe-------------pp~~~ifIlatt-~~~ki~~tI~SRc~~-~~f~~~~~-~ei~~~L~------------- 188 (559)
T PRK05563 138 ALLKTLEE-------------PPAHVIFILATT-EPHKIPATILSRCQR-FDFKRISV-EDIVERLK------------- 188 (559)
T ss_pred HHHHHhcC-------------CCCCeEEEEEeC-ChhhCcHHHHhHheE-EecCCCCH-HHHHHHHH-------------
Confidence 99999986 234555555544 235689999999975 88888754 33333322
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
.+.. ...+.++++++..|+..+. . +.|.+.+++..+.+. +.+.|+.+++.+++..
T Consensus 189 ------------~i~~----~egi~i~~~al~~ia~~s~---G-~~R~al~~Ldq~~~~----~~~~It~~~V~~vlg~ 243 (559)
T PRK05563 189 ------------YILD----KEGIEYEDEALRLIARAAE---G-GMRDALSILDQAISF----GDGKVTYEDALEVTGS 243 (559)
T ss_pred ------------HHHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh----ccCCCCHHHHHHHhCC
Confidence 1111 2257889999888887664 2 679998888876543 2456888888776543
No 69
>PHA02244 ATPase-like protein
Probab=99.64 E-value=4.5e-14 Score=130.83 Aligned_cols=130 Identities=16% Similarity=0.246 Sum_probs=91.6
Q ss_pred eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhh
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVC 138 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (369)
+++|.||||||||+++++++..+. .++..+.... ... .+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg-------~pfv~In~l~--d~~-------------------------------~L~ 160 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALD-------LDFYFMNAIM--DEF-------------------------------ELK 160 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-------CCEEEEecCh--HHH-------------------------------hhc
Confidence 399999999999999999999873 2222211000 000 011
Q ss_pred cccchhHHhhhcccccccchhhh--cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC
Q 017575 139 GTIDIEKALTEGVKAFEPGLLAK--ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE 216 (369)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~g~~~~--a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~ 216 (369)
|.. .....+..|++.+ .++++++|||++.++++++..|..+++++.+... +..+..+.+|.+|+|+|+.
T Consensus 161 G~i-------~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~--g~~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 161 GFI-------DANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFA--DERVTAHEDFRVISAGNTL 231 (383)
T ss_pred ccc-------cccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEec--CcEEecCCCEEEEEeeCCC
Confidence 100 0011234455533 4789999999999999999999999998865544 6677777899999999983
Q ss_pred C----------CCCCHhHHhhhccceeecCCC
Q 017575 217 E----------GELRPQLLDRFGMHAQVGTVR 238 (369)
Q Consensus 217 ~----------~~l~~al~~R~~~~i~~~~~~ 238 (369)
. ..++++++|||.. +.+++|.
T Consensus 232 ~~G~~~~y~G~k~L~~AllDRFv~-I~~dyp~ 262 (383)
T PHA02244 232 GKGADHIYVARNKIDGATLDRFAP-IEFDYDE 262 (383)
T ss_pred ccCcccccCCCcccCHHHHhhcEE-eeCCCCc
Confidence 2 3489999999975 9999984
No 70
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=4.7e-15 Score=145.07 Aligned_cols=233 Identities=17% Similarity=0.298 Sum_probs=138.3
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++++|. +|++++||+.++..+...+....-.| +||+||+|+|||++|++++..+.........+|.. ..
T Consensus 5 ~~KyRP~-~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~--------C~ 75 (535)
T PRK08451 5 ALKYRPK-HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT--------CI 75 (535)
T ss_pred HHHHCCC-CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc--------cH
Confidence 3455554 89999999999999988884333334 79999999999999999998873211100111111 00
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+... ..+.. ..++.+... ...+.+ ....... .+.+ ..++..|++|||+++++.+.+++
T Consensus 76 ~C~~~-~~~~h-------~dv~eldaas~~gId~I------Relie~~--~~~P---~~~~~KVvIIDEad~Lt~~A~NA 136 (535)
T PRK08451 76 QCQSA-LENRH-------IDIIEMDAASNRGIDDI------RELIEQT--KYKP---SMARFKIFIIDEVHMLTKEAFNA 136 (535)
T ss_pred HHHHH-hhcCC-------CeEEEeccccccCHHHH------HHHHHHH--hhCc---ccCCeEEEEEECcccCCHHHHHH
Confidence 00000 00000 000111000 001111 1111110 0111 11345699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++ .|..+.+|++++. +..+.+++.+||.. +++.+++..+.. ..+.
T Consensus 137 LLK~LEE-------------pp~~t~FIL~ttd-~~kL~~tI~SRc~~-~~F~~Ls~~ei~-~~L~-------------- 186 (535)
T PRK08451 137 LLKTLEE-------------PPSYVKFILATTD-PLKLPATILSRTQH-FRFKQIPQNSII-SHLK-------------- 186 (535)
T ss_pred HHHHHhh-------------cCCceEEEEEECC-hhhCchHHHhhcee-EEcCCCCHHHHH-HHHH--------------
Confidence 9999987 2345555556553 35789999999875 999888543332 2222
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.+.. ...+.++++++.+|+..+.. +.|.+.+++..+...+ ...|+.+++.+++.
T Consensus 187 -----------~Il~----~EGi~i~~~Al~~Ia~~s~G----dlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 187 -----------TILE----KEGVSYEPEALEILARSGNG----SLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 1111 12478899999888887752 7899999988766543 34577777765543
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.7e-15 Score=146.46 Aligned_cols=235 Identities=18% Similarity=0.229 Sum_probs=139.8
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++.+|. .|++++||+.+++.+...+......| ++|+||+|+||||+|++++..+.-.......+|+.. ..
T Consensus 5 ~kyRP~-~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C--------~~ 75 (584)
T PRK14952 5 RKYRPA-TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC--------ES 75 (584)
T ss_pred HHhCCC-cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc--------HH
Confidence 445555 89999999999999988885434456 899999999999999999988742211111122111 00
Q ss_pred hhhhhh-ccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 106 VRESVV-KGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
+..... .+... .++.+... ...+.+ ..+... ..+.+ ..++..|+||||++++....++.
T Consensus 76 C~~i~~~~~~~~-------dvieidaas~~gvd~i-------Rel~~~-~~~~P---~~~~~KVvIIDEah~Lt~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSI-------DVVELDAASHGGVDDT-------RELRDR-AFYAP---AQSRYRIFIVDEAHMVTTAGFNA 137 (584)
T ss_pred HHHhhcccCCCc-------eEEEeccccccCHHHH-------HHHHHH-HHhhh---hcCCceEEEEECCCcCCHHHHHH
Confidence 110000 00000 01011000 001110 001000 00111 12456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .+.++.+|++++ ....+.+++.+||.. +.+..++..+ ....+.
T Consensus 138 LLK~LEE-------------pp~~~~fIL~tt-e~~kll~TI~SRc~~-~~F~~l~~~~-i~~~L~-------------- 187 (584)
T PRK14952 138 LLKIVEE-------------PPEHLIFIFATT-EPEKVLPTIRSRTHH-YPFRLLPPRT-MRALIA-------------- 187 (584)
T ss_pred HHHHHhc-------------CCCCeEEEEEeC-ChHhhHHHHHHhceE-EEeeCCCHHH-HHHHHH--------------
Confidence 9999987 244555555554 234689999999865 9988885433 322322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
++.. ...+.++++++.+|...+. . +.|.+.+++..+.+ +.+...|+.+++..++..
T Consensus 188 -----------~i~~----~egi~i~~~al~~Ia~~s~---G-dlR~aln~Ldql~~---~~~~~~It~~~v~~llg~ 243 (584)
T PRK14952 188 -----------RICE----QEGVVVDDAVYPLVIRAGG---G-SPRDTLSVLDQLLA---GAADTHVTYQRALGLLGA 243 (584)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHh---ccCCCCcCHHHHHHHHCC
Confidence 1111 2247889999888877654 2 67999898887643 233556888777766543
No 72
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.7e-15 Score=143.59 Aligned_cols=219 Identities=19% Similarity=0.236 Sum_probs=140.6
Q ss_pred CCCCCccccChHHHHHHhhhhhccC-------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDP-------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~-------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
|..+|++|=|++++++.+..++..| ...+||++||||||||++||++|.... .+|-.+.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~-------~nFlsvk- 500 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG-------MNFLSVK- 500 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc-------CCeeecc-
Confidence 4447889988999988887665321 123499999999999999999999884 2221111
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC-
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~- 176 (369)
. ++++ ....+..+..+...++ . -..+-|+|+|+||++.+.
T Consensus 501 -g----pEL~-------------------sk~vGeSEr~ir~iF~-------------k--AR~~aP~IiFfDEiDsi~~ 541 (693)
T KOG0730|consen 501 -G----PELF-------------------SKYVGESERAIREVFR-------------K--ARQVAPCIIFFDEIDALAG 541 (693)
T ss_pred -C----HHHH-------------------HHhcCchHHHHHHHHH-------------H--HhhcCCeEEehhhHHhHhh
Confidence 0 0111 0111111111111111 0 012357899999994432
Q ss_pred ----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHH
Q 017575 177 ----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRV 244 (369)
Q Consensus 177 ----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~ 244 (369)
..+.+.|+.-|+. + ....++++|+++|- +..+++||++ ||+..+.++.| +.+.+.
T Consensus 542 ~R~g~~~~v~~RVlsqLLtEmDG----~-------e~~k~V~ViAATNR-pd~ID~ALlRPGRlD~iiyVplP-D~~aR~ 608 (693)
T KOG0730|consen 542 SRGGSSSGVTDRVLSQLLTEMDG----L-------EALKNVLVIAATNR-PDMIDPALLRPGRLDRIIYVPLP-DLEARL 608 (693)
T ss_pred ccCCCccchHHHHHHHHHHHccc----c-------cccCcEEEEeccCC-hhhcCHHHcCCcccceeEeecCc-cHHHHH
Confidence 2356666666653 1 11257899999995 4469999999 99998888888 677788
Q ss_pred HHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHH-HHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 017575 245 KIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHD-LKVKISKVCAELNVDGLRGDIVSNRAAKALAAL 323 (369)
Q Consensus 245 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l 323 (369)
.|++.. .++..++++ -++.|++... |+ |.+.+..+++-|...|.-
T Consensus 609 ~Ilk~~-------------------------------~kkmp~~~~vdl~~La~~T~--g~-SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 609 EILKQC-------------------------------AKKMPFSEDVDLEELAQATE--GY-SGAEIVAVCQEAALLALR 654 (693)
T ss_pred HHHHHH-------------------------------HhcCCCCccccHHHHHHHhc--cC-ChHHHHHHHHHHHHHHHH
Confidence 887743 124566665 2333443332 44 778999999999988876
Q ss_pred cC--CCCCCHHHHHHHHhHHhc
Q 017575 324 KG--RDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 324 ~~--~~~v~~~~i~~a~~~vl~ 343 (369)
+. ...|..+|+.+|+..+-.
T Consensus 655 e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 655 ESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HhcccccccHHHHHHHHHhhcc
Confidence 54 457899999999985543
No 73
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.63 E-value=8e-15 Score=132.44 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=105.6
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecC-----------CCCCCCCHhHHhhhccc
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGN-----------PEEGELRPQLLDRFGMH 231 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n-----------~~~~~l~~al~~R~~~~ 231 (369)
=|+||||||.|+||-+.++.|...|++.-- ..+|.++| ..|..++..|+||+.+
T Consensus 291 VpGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllI- 355 (450)
T COG1224 291 VPGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLI- 355 (450)
T ss_pred ecceEEEechhhhhHHHHHHHHHHhhcccC--------------cEEEEEcCCceeeecccCCcCCCCCCHhhhhheeE-
Confidence 389999999999999999999999987321 22333433 2345599999999876
Q ss_pred eeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhH
Q 017575 232 AQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDI 311 (369)
Q Consensus 232 i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~ 311 (369)
+...+. .++....|+.. +.....+.++++++++|..+..+. |.|.+.
T Consensus 356 I~t~py-~~~EireIi~i-----------------------------Ra~ee~i~l~~~Ale~L~~ig~et---SLRYa~ 402 (450)
T COG1224 356 ISTRPY-SREEIREIIRI-----------------------------RAKEEDIELSDDALEYLTDIGEET---SLRYAV 402 (450)
T ss_pred EecCCC-CHHHHHHHHHH-----------------------------hhhhhccccCHHHHHHHHhhchhh---hHHHHH
Confidence 666555 55666566553 344557999999999999988764 569999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 312 VSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 312 ~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
+|+.-|.-+|..+|+..|..+|+..|..+.+..
T Consensus 403 qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 403 QLLTPASIIAKRRGSKRVEVEDVERAKELFLDV 435 (450)
T ss_pred HhccHHHHHHHHhCCCeeehhHHHHHHHHHhhH
Confidence 999999999999999999999999998876543
No 74
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.63 E-value=3.8e-15 Score=141.93 Aligned_cols=218 Identities=22% Similarity=0.285 Sum_probs=136.7
Q ss_pred CCCCCCccccChHHHHHHhhhhhccC-------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVIDP-------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~~-------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...++++.|.+..++.+...+..+ ...+++|+||||||||+++++++..+.. ++..+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~ 188 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 188 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence 45567889999888877665544211 1224999999999999999999998742 111110
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccch---hhhcCCCeEEEeCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGL---LAKANRGILYVDEVN 173 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~a~~~vl~lDE~~ 173 (369)
...+... ..+. +.. ..... .....|+++||||++
T Consensus 189 ------~~~l~~~---------------------------~~g~---------~~~-~i~~~f~~a~~~~p~il~iDEiD 225 (364)
T TIGR01242 189 ------GSELVRK---------------------------YIGE---------GAR-LVREIFELAKEKAPSIIFIDEID 225 (364)
T ss_pred ------hHHHHHH---------------------------hhhH---------HHH-HHHHHHHHHHhcCCcEEEhhhhh
Confidence 0000000 0000 000 00001 112357899999996
Q ss_pred CC-----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 174 LL-----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 174 ~l-----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
.+ +++.+..+.+++..-. + .....++.+|+|+|.. ..+++++++ ||+..+.++.| +.
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~--~~~~~~v~vI~ttn~~-~~ld~al~r~grfd~~i~v~~P-~~ 295 (364)
T TIGR01242 226 AIAAKRTDSGTSGDREVQRTLMQLLAELD------G--FDPRGNVKVIAATNRP-DILDPALLRPGRFDRIIEVPLP-DF 295 (364)
T ss_pred hhccccccCCCCccHHHHHHHHHHHHHhh------C--CCCCCCEEEEEecCCh-hhCChhhcCcccCceEEEeCCc-CH
Confidence 65 4566777777775411 1 1112467889999954 468999986 89888999988 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHH-HHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHD-LKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+.... . ...++++ ....++..+. |. |.+.+..+++.|..
T Consensus 296 ~~r~~Il~~~~---------------------------~----~~~l~~~~~~~~la~~t~--g~-sg~dl~~l~~~A~~ 341 (364)
T TIGR01242 296 EGRLEILKIHT---------------------------R----KMKLAEDVDLEAIAKMTE--GA-SGADLKAICTEAGM 341 (364)
T ss_pred HHHHHHHHHHH---------------------------h----cCCCCccCCHHHHHHHcC--CC-CHHHHHHHHHHHHH
Confidence 77777755221 0 1122211 1333444442 45 67889999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHH
Q 017575 320 LAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~v 341 (369)
.|..+++..|+.+|+.+|+..+
T Consensus 342 ~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 342 FAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHhCCCccCHHHHHHHHHHh
Confidence 9999999999999999999865
No 75
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.63 E-value=4.6e-15 Score=138.69 Aligned_cols=200 Identities=21% Similarity=0.178 Sum_probs=126.2
Q ss_pred eeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhh
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRV 137 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (369)
.|+|.|++||||+++|++|........ .+... ++.......+...+++.
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~v--nc~~~~~~~l~~~lfG~---------------------------- 73 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKL--NCAALSENLLDSELFGH---------------------------- 73 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEE--eCCCCChHHHHHHHhcc----------------------------
Confidence 399999999999999999988765321 11111 11111122222222211
Q ss_pred hcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC
Q 017575 138 CGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE 217 (369)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~ 217 (369)
.. .. -.|......|.+..++++++||||++.++...|..|+.+|+++.+.- .|.....+.++.+|+++|...
T Consensus 74 ---~~--g~-~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 74 ---EA--GA-FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFER--VGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred ---cc--cc-ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEe--cCCCceeccceEEEEechhhH
Confidence 00 00 01122235788888999999999999999999999999999876443 254555667899999998542
Q ss_pred ------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCC--cccC
Q 017575 218 ------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPA--VQID 288 (369)
Q Consensus 218 ------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~i~ 288 (369)
+.+.+.|+.||.. .|.+|+. ++...+|...- ..+..++. ...... ..++
T Consensus 146 ~~~~~~g~fr~dL~~rl~~~~i~lPpL--ReR~eDI~~L~------------------~~fl~~~~--~~~~~~~~~~ls 203 (329)
T TIGR02974 146 PALAAEGRFRADLLDRLAFDVITLPPL--RERQEDIMLLA------------------EHFAIRMA--RELGLPLFPGFT 203 (329)
T ss_pred HHHhhcCchHHHHHHHhcchhcCCCch--hhhhhhHHHHH------------------HHHHHHHH--HHhCCCCCCCcC
Confidence 4578999999954 4555555 44444553321 11111221 111223 4799
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 289 HDLKVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 289 ~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
++++..|..+....|+ |.+.+++..+...+
T Consensus 204 ~~a~~~L~~y~WPGNv---rEL~n~i~~~~~~~ 233 (329)
T TIGR02974 204 PQAREQLLEYHWPGNV---RELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHhCCCCchH---HHHHHHHHHHHHhC
Confidence 9999999988875554 88888777655443
No 76
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.9e-15 Score=144.13 Aligned_cols=222 Identities=21% Similarity=0.287 Sum_probs=138.3
Q ss_pred eeeccchhhhhHHHHhHhhhhcCCCCCCCccccChHHHHHHhhhhh----c-cCCCCe-eEEecCCCCChhHHHHHHHhc
Q 017575 7 AVTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNV----I-DPKIGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l----~-~~~~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
-|.+-|.|--++.+++..+++ +.||-+++++.+...+ + ....|. ++|+||||+|||+++|.||..
T Consensus 391 PWgk~S~En~dl~~Ak~iLde---------DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 391 PWGKSSTENLDLARAKEILDE---------DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred CCCCCChhhhhHHHHHHhhcc---------cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH
Confidence 477778887888889988877 3567677776665544 2 223445 999999999999999999999
Q ss_pred cCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhccccc---ccc
Q 017575 81 LPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAF---EPG 157 (369)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g 157 (369)
+. ..|.+.....-....++ .|.-+.| .||
T Consensus 462 Ln-------RkFfRfSvGG~tDvAeI-----------------------------------------kGHRRTYVGAMPG 493 (906)
T KOG2004|consen 462 LN-------RKFFRFSVGGMTDVAEI-----------------------------------------KGHRRTYVGAMPG 493 (906)
T ss_pred hC-------CceEEEeccccccHHhh-----------------------------------------cccceeeeccCCh
Confidence 94 22222111111111111 1111111 145
Q ss_pred hhhhc------CCCeEEEeCCCCCCH----HHHHHHHHHHhcCCce-eeeccee--eeec-CceEEEeecCCCCCCCCHh
Q 017575 158 LLAKA------NRGILYVDEVNLLDD----HLVDVLLDSAASGWNT-VEREGIS--ISHP-ARFILIGSGNPEEGELRPQ 223 (369)
Q Consensus 158 ~~~~a------~~~vl~lDE~~~l~~----~~~~~L~~~l~~~~~~-~~~~~~~--~~~~-~~~~li~t~n~~~~~l~~a 223 (369)
.+-++ ++.+++|||++++.. +--++|+++|+..+.. +. .+. +..+ ..+.||+|+|..+ .+++|
T Consensus 494 kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFl--DHYLdVp~DLSkVLFicTAN~id-tIP~p 570 (906)
T KOG2004|consen 494 KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFL--DHYLDVPVDLSKVLFICTANVID-TIPPP 570 (906)
T ss_pred HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchh--hhccccccchhheEEEEeccccc-cCChh
Confidence 44433 788999999977764 2458999999854321 11 222 3333 3589999999654 59999
Q ss_pred HHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHH-HHHHHHHHc
Q 017575 224 LLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKV-KISKVCAEL 302 (369)
Q Consensus 224 l~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-~l~~~~~~~ 302 (369)
|+||..+ |.++-. ..+....|..+.- +.+.....--.-.++.++++++. .|.+||++.
T Consensus 571 LlDRMEv-IelsGY-v~eEKv~IA~~yL-------------------ip~a~~~~gl~~e~v~is~~al~~lI~~YcrEa 629 (906)
T KOG2004|consen 571 LLDRMEV-IELSGY-VAEEKVKIAERYL-------------------IPQALKDCGLKPEQVKISDDALLALIERYCREA 629 (906)
T ss_pred hhhhhhe-eeccCc-cHHHHHHHHHHhh-------------------hhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHH
Confidence 9999987 888766 4455666655321 11222222222236899888877 466799988
Q ss_pred CCCCCchhHH
Q 017575 303 NVDGLRGDIV 312 (369)
Q Consensus 303 ~~~s~R~~~~ 312 (369)
|+ |.+..
T Consensus 630 GV---RnLqk 636 (906)
T KOG2004|consen 630 GV---RNLQK 636 (906)
T ss_pred hH---HHHHH
Confidence 77 66543
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.63 E-value=4.8e-15 Score=134.73 Aligned_cols=134 Identities=22% Similarity=0.307 Sum_probs=87.5
Q ss_pred hhhhcCCCeEEEeCCCCCC--------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHH
Q 017575 158 LLAKANRGILYVDEVNLLD--------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLL 225 (369)
Q Consensus 158 ~~~~a~~~vl~lDE~~~l~--------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~ 225 (369)
.+..+.++|+||||++.+. .+.++.|+..|++. ...+.+|+++++.+. .+++++.
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-------------~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-------------RNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-------------CCCEEEEecCCcchhHHHHhcChHHH
Confidence 3445667899999998865 45678888888762 234666777665332 2678999
Q ss_pred hhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc---
Q 017575 226 DRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL--- 302 (369)
Q Consensus 226 ~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~--- 302 (369)
+||...+.++++ ..+....|+... ... ....+++++..+|.+.....
T Consensus 167 sRf~~~i~f~~~-~~~el~~Il~~~-------------------------~~~----~~~~l~~~a~~~l~~~~~~~~~~ 216 (261)
T TIGR02881 167 SRFPISIDFPDY-TVEELMEIAERM-------------------------VKE----REYKLTEEAKWKLREHLYKVDQL 216 (261)
T ss_pred hccceEEEECCC-CHHHHHHHHHHH-------------------------HHH----cCCccCHHHHHHHHHHHHHHHhc
Confidence 999888889877 456565665421 111 25678999999887765432
Q ss_pred ---CCCCCchhHHHHHHHHHHHHHc--CCCCCCHHHH
Q 017575 303 ---NVDGLRGDIVSNRAAKALAALK--GRDKVSAEDI 334 (369)
Q Consensus 303 ---~~~s~R~~~~ll~~a~a~A~l~--~~~~v~~~~i 334 (369)
..+..|.+.+++..|......+ +...++.+++
T Consensus 217 ~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 217 SSREFSNARYVRNIIEKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 1236788999988876554422 2233444443
No 78
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.62 E-value=5.4e-15 Score=145.58 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=145.2
Q ss_pred CCCccccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+.|++++|+......+...+.. ....+|+|.|++||||+++|+.|....+... .+... ++.......+.+++++.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~i--nC~~l~e~lleseLFG~ 286 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAI--NCGAIAESLLEAELFGY 286 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEe--ccccCChhHHHHHhcCC
Confidence 5688899998765554443311 1222399999999999999999997764221 11111 22111122222333221
Q ss_pred hhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 110 VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.. .++.+.......|.+..++++.+||||++.+|+..|..|+.+|++
T Consensus 287 -------------------------------~~--gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~ 333 (526)
T TIGR02329 287 -------------------------------EE--GAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEE 333 (526)
T ss_pred -------------------------------cc--cccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhc
Confidence 00 011111112346888889999999999999999999999999998
Q ss_pred CCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 190 GWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
+.+.- .|.....+.++.+|+++|... +.+.+.|..|+.. .+.+|+. ++...+|...-
T Consensus 334 ~~~~r--~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPL--ReR~eDI~~L~------------ 397 (526)
T TIGR02329 334 REVVR--VGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPL--RERPGDILPLA------------ 397 (526)
T ss_pred CcEEe--cCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCc--hhchhHHHHHH------------
Confidence 77543 254455667889999988432 3477788999864 4555544 55555553321
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHH-------HHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVK-------ISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-------l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
...+.+.. ....+.++++++.. |..+.... ..|.+.+++..+...+.-.....|+.+++.
T Consensus 398 ---------~~fl~~~~-~~~~~~~~~~a~~~~~~~~~~L~~y~WPG---NvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 398 ---------AEYLVQAA-AALRLPDSEAAAQVLAGVADPLQRYPWPG---NVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred ---------HHHHHHHH-HHcCCCCCHHHHHHhHHHHHHHHhCCCCc---hHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 11111111 11134688888877 44444433 347777777766554332234578888876
Q ss_pred HHH
Q 017575 336 TVM 338 (369)
Q Consensus 336 ~a~ 338 (369)
...
T Consensus 465 ~~~ 467 (526)
T TIGR02329 465 ALA 467 (526)
T ss_pred hhc
Confidence 544
No 79
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=2.3e-15 Score=136.20 Aligned_cols=219 Identities=17% Similarity=0.217 Sum_probs=135.8
Q ss_pred CCccccChHHHH--HHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 34 PFTAIVGQEEMK--LCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 34 ~~~~i~G~~~~~--~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
.+.+.+||+.++ +.+...++..+.=. ++|.|||||||||||+.|+.-.+..+++ |..... ...-..+++++|
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~Syr----fvelSA-t~a~t~dvR~if 210 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYR----FVELSA-TNAKTNDVRDIF 210 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceE----EEEEec-cccchHHHHHHH
Confidence 577899998873 45555554212222 9999999999999999999887643311 100000 000011222221
Q ss_pred hccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcC
Q 017575 111 VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASG 190 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~ 190 (369)
... ..... ...+..|+||||++++....|..|+-.++.|
T Consensus 211 e~a-------------------------------------q~~~~----l~krkTilFiDEiHRFNksQQD~fLP~VE~G 249 (554)
T KOG2028|consen 211 EQA-------------------------------------QNEKS----LTKRKTILFIDEIHRFNKSQQDTFLPHVENG 249 (554)
T ss_pred HHH-------------------------------------HHHHh----hhcceeEEEeHHhhhhhhhhhhcccceeccC
Confidence 111 11000 0113459999999999999999998888876
Q ss_pred CceeeecceeeeecCceEEEeecC-CCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHH
Q 017575 191 WNTVEREGISISHPARFILIGSGN-PEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQA 269 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~li~t~n-~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 269 (369)
.+ .+|+++. .+...+..||++||.+ +.+... ..+....|+.+....-
T Consensus 250 ~I---------------~lIGATTENPSFqln~aLlSRC~V-fvLekL-~~n~v~~iL~raia~l--------------- 297 (554)
T KOG2028|consen 250 DI---------------TLIGATTENPSFQLNAALLSRCRV-FVLEKL-PVNAVVTILMRAIASL--------------- 297 (554)
T ss_pred ce---------------EEEecccCCCccchhHHHHhccce-eEeccC-CHHHHHHHHHHHHHhh---------------
Confidence 44 3455543 2345688999999987 778777 5666667765432100
Q ss_pred HHHHHHHHHHh---hCC--CcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCC----CCCCHHHHHHHHhH
Q 017575 270 KLQQQIASARS---SLP--AVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGR----DKVSAEDIATVMPN 340 (369)
Q Consensus 270 ~~~~~i~~~~~---~~~--~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~----~~v~~~~i~~a~~~ 340 (369)
...+. ..+ .+.+++.++++|+.++-. ..|.+.+.+..+.+++-.+.. ..++.+|++++++.
T Consensus 298 ------~dser~~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 298 ------GDSERPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred ------ccccccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 01111 112 245788888888877753 579999999998666655433 36899999998864
No 80
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=7.6e-15 Score=146.82 Aligned_cols=233 Identities=19% Similarity=0.301 Sum_probs=138.9
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.++..+...+....-.| +||+||+|+||||++++++..+.-.......+|+.. .
T Consensus 7 ~~k~RP~-~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c--------~ 77 (576)
T PRK14965 7 ARKYRPQ-TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC--------P 77 (576)
T ss_pred HHHhCCC-CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc--------H
Confidence 3445554 89999999999999888874323335 899999999999999999998842211111122111 0
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+. .+..+...+ ++.+.. ....+.+- .+... ..+.+ ..++..|+||||++++....++.
T Consensus 78 ~c~-~i~~g~~~d-------~~eid~~s~~~v~~ir-------~l~~~-~~~~p---~~~~~KVvIIdev~~Lt~~a~na 138 (576)
T PRK14965 78 PCV-EITEGRSVD-------VFEIDGASNTGVDDIR-------ELREN-VKYLP---SRSRYKIFIIDEVHMLSTNAFNA 138 (576)
T ss_pred HHH-HHhcCCCCC-------eeeeeccCccCHHHHH-------HHHHH-HHhcc---ccCCceEEEEEChhhCCHHHHHH
Confidence 011 111111110 000100 00011110 00000 00111 12456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .+.++.+|+++| .+..+.+++++||.. +.+..++..+.. ..+.
T Consensus 139 LLk~LEe-------------pp~~~~fIl~t~-~~~kl~~tI~SRc~~-~~f~~l~~~~i~-~~L~-------------- 188 (576)
T PRK14965 139 LLKTLEE-------------PPPHVKFIFATT-EPHKVPITILSRCQR-FDFRRIPLQKIV-DRLR-------------- 188 (576)
T ss_pred HHHHHHc-------------CCCCeEEEEEeC-ChhhhhHHHHHhhhh-hhcCCCCHHHHH-HHHH--------------
Confidence 9999997 234555565555 235699999999975 888888543322 2222
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.+.. ...+.++++++.+|...+.. +.|.+.+++..+.+ +.. +.|+.+++..++.
T Consensus 189 -----------~i~~----~egi~i~~~al~~la~~a~G----~lr~al~~Ldqlia--y~g--~~It~edV~~llG 242 (576)
T PRK14965 189 -----------YIAD----QEGISISDAALALVARKGDG----SMRDSLSTLDQVLA--FCG--DAVGDDDVAELLG 242 (576)
T ss_pred -----------HHHH----HhCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHH--hcc--CCCCHHHHHHHhC
Confidence 1111 12578899998888877752 67988888875443 332 3588888877643
No 81
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.61 E-value=5.4e-15 Score=141.97 Aligned_cols=232 Identities=18% Similarity=0.237 Sum_probs=138.8
Q ss_pred CCCCCCCccccChHHHHHHhhhhhc----c---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVI----D---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSD 95 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~----~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 95 (369)
..|...|.+|.|.+..+..+...+. . ....+++|+||||||||++++++++.+... +..+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~-------fi~V 248 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT-------FLRV 248 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC-------EEEE
Confidence 3455678899898777665544431 1 012249999999999999999999987421 1100
Q ss_pred CCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC
Q 017575 96 PEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l 175 (369)
..+++...+ .+.....+... +. ......|.|+||||++.+
T Consensus 249 ------~~seL~~k~-------------------~Ge~~~~vr~l-------------F~--~A~~~~P~ILfIDEID~l 288 (438)
T PTZ00361 249 ------VGSELIQKY-------------------LGDGPKLVREL-------------FR--VAEENAPSIVFIDEIDAI 288 (438)
T ss_pred ------ecchhhhhh-------------------cchHHHHHHHH-------------HH--HHHhCCCcEEeHHHHHHH
Confidence 000000000 00000000000 00 001125789999998433
Q ss_pred -----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHH
Q 017575 176 -----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAEL 242 (369)
Q Consensus 176 -----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~ 242 (369)
+.+.+..++++|..- . + .....++.+|+|+|.. ..+++++++ ||+..|.++.| +.+.
T Consensus 289 ~~kR~~~~sgg~~e~qr~ll~LL~~L----d--g--~~~~~~V~VI~ATNr~-d~LDpaLlRpGRfd~~I~~~~P-d~~~ 358 (438)
T PTZ00361 289 GTKRYDATSGGEKEIQRTMLELLNQL----D--G--FDSRGDVKVIMATNRI-ESLDPALIRPGRIDRKIEFPNP-DEKT 358 (438)
T ss_pred hccCCCCCCcccHHHHHHHHHHHHHH----h--h--hcccCCeEEEEecCCh-HHhhHHhccCCeeEEEEEeCCC-CHHH
Confidence 234556666666431 0 1 1112367888999953 458999986 99999999999 5677
Q ss_pred HHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 243 RVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 243 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
+..|+.... . ...+++++ +..+...+ .++ |...+..++..|...|
T Consensus 359 R~~Il~~~~---------------------------~----k~~l~~dvdl~~la~~t--~g~-sgAdI~~i~~eA~~~A 404 (438)
T PTZ00361 359 KRRIFEIHT---------------------------S----KMTLAEDVDLEEFIMAK--DEL-SGADIKAICTEAGLLA 404 (438)
T ss_pred HHHHHHHHH---------------------------h----cCCCCcCcCHHHHHHhc--CCC-CHHHHHHHHHHHHHHH
Confidence 777765321 0 11222221 22233222 245 6678889999999999
Q ss_pred HHcCCCCCCHHHHHHHHhHHhcccccCCCC
Q 017575 322 ALKGRDKVSAEDIATVMPNCLRHRLRKDPL 351 (369)
Q Consensus 322 ~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~ 351 (369)
..+++..|+.+|+.+|+..++..+....|+
T Consensus 405 lr~~r~~Vt~~D~~~A~~~v~~~~~~~~~~ 434 (438)
T PTZ00361 405 LRERRMKVTQADFRKAKEKVLYRKKGNIPE 434 (438)
T ss_pred HHhcCCccCHHHHHHHHHHHHhhcccCCCc
Confidence 999999999999999999987765544443
No 82
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.1e-14 Score=149.72 Aligned_cols=233 Identities=18% Similarity=0.264 Sum_probs=137.1
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++++|. .|++++||+.+++.|...+......| +||+||+||||||++++|+..+.-.......+|.. ...
T Consensus 7 ~KyRP~-~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~--------C~s 77 (824)
T PRK07764 7 RRYRPA-TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE--------CDS 77 (824)
T ss_pred HHhCCC-CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc--------cHH
Confidence 445555 89999999999999988885434446 89999999999999999999884111000011111 001
Q ss_pred hhhhhhcc--ccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 106 VRESVVKG--EELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 106 ~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
+.. +..+ ... .++.+... ...+.+ ..+... ..+.+ ...+..|+||||++++....++
T Consensus 78 C~~-~~~g~~~~~-------dv~eidaas~~~Vd~i-------R~l~~~-~~~~p---~~~~~KV~IIDEad~lt~~a~N 138 (824)
T PRK07764 78 CVA-LAPGGPGSL-------DVTEIDAASHGGVDDA-------RELRER-AFFAP---AESRYKIFIIDEAHMVTPQGFN 138 (824)
T ss_pred HHH-HHcCCCCCC-------cEEEecccccCCHHHH-------HHHHHH-HHhch---hcCCceEEEEechhhcCHHHHH
Confidence 111 0001 000 00001000 000110 111100 00111 1245679999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|+++|++ .+.+++||++++- ..++...|.+||.+ +.+..++ .+....++.
T Consensus 139 aLLK~LEE-------------pP~~~~fIl~tt~-~~kLl~TIrSRc~~-v~F~~l~-~~~l~~~L~------------- 189 (824)
T PRK07764 139 ALLKIVEE-------------PPEHLKFIFATTE-PDKVIGTIRSRTHH-YPFRLVP-PEVMRGYLE------------- 189 (824)
T ss_pred HHHHHHhC-------------CCCCeEEEEEeCC-hhhhhHHHHhheeE-EEeeCCC-HHHHHHHHH-------------
Confidence 99999997 2345556655552 23588899999976 8888874 333333322
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
++. ....+.++++++.+|...+. . +.|.+.+++.... + +.+.+.|+.+++...+.
T Consensus 190 ------------~il----~~EGv~id~eal~lLa~~sg---G-dlR~Al~eLEKLi--a-~~~~~~IT~e~V~allg 244 (824)
T PRK07764 190 ------------RIC----AQEGVPVEPGVLPLVIRAGG---G-SVRDSLSVLDQLL--A-GAGPEGVTYERAVALLG 244 (824)
T ss_pred ------------HHH----HHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHH--h-hcCCCCCCHHHHHHHhc
Confidence 111 12257889998888877664 2 6788887777644 2 23355677777766544
No 83
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.61 E-value=9.5e-15 Score=143.75 Aligned_cols=242 Identities=15% Similarity=0.144 Sum_probs=141.3
Q ss_pred CCCccccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcce----eecCCCC---CCCCCCcchhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VVVGDPY---NSDPEDPEAMG 103 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~----~~~~~~~---~~~~~~~~~~~ 103 (369)
+.|++++|+......+...+.. .....|+|.|++||||+++|++|........ .....+| ++.......+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 4688899998765555444321 1222399999999999999999998722110 0111222 22111122222
Q ss_pred hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
+++++ ... .++.+....-.+|.+..+++|.|||||++.+++..|..|
T Consensus 296 seLFG-------------------------------~~~--gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kL 342 (538)
T PRK15424 296 AELFG-------------------------------YEE--GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRL 342 (538)
T ss_pred HHhcC-------------------------------Ccc--ccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHH
Confidence 23222 110 011111112346888889999999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCC
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNP 257 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~ 257 (369)
+.+|+++.+.- .|.....+.++.+|+++|... +.+.+.|..|+.. +.+.-|+.++...+|...-
T Consensus 343 l~~L~e~~~~r--~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~------- 412 (538)
T PRK15424 343 LRVLEEKEVTR--VGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLA------- 412 (538)
T ss_pred HhhhhcCeEEe--cCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHH-------
Confidence 99999886543 255556677899999988532 3477889999875 5555555566555563321
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHH-------HHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 017575 258 KEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVK-------ISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVS 330 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-------l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~ 330 (369)
...+.+... .....+++++... |..+.... ..|.+.+++..+...+.-.....++
T Consensus 413 --------------~~fl~~~~~-~~~~~~~~~a~~~~~~a~~~L~~y~WPG---NvREL~nvier~~i~~~~~~~~~i~ 474 (538)
T PRK15424 413 --------------ESFLKQSLA-ALSAPFSAALRQGLQQCETLLLHYDWPG---NVRELRNLMERLALFLSVEPTPDLT 474 (538)
T ss_pred --------------HHHHHHHHH-HcCCCCCHHHHHhhHHHHHHHHhCCCCc---hHHHHHHHHHHHHHhcCCCCcCccC
Confidence 111111111 1123477766643 33333322 4488888777765533222224567
Q ss_pred HHHHH
Q 017575 331 AEDIA 335 (369)
Q Consensus 331 ~~~i~ 335 (369)
++++.
T Consensus 475 ~~~l~ 479 (538)
T PRK15424 475 PQFLQ 479 (538)
T ss_pred HHHhh
Confidence 76664
No 84
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.60 E-value=2.7e-14 Score=141.32 Aligned_cols=221 Identities=22% Similarity=0.296 Sum_probs=130.6
Q ss_pred CCCCCCCccccChHHHHHHhhhhhc---c---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVI---D---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~---~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
..|...|++++|.+.++..+...+. . ....+++|+||||||||++++++++... .++..+.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-------~~~~~i~ 120 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-------VPFFSIS 120 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-------CCeeecc
Confidence 3455689999999887665543221 0 0122499999999999999999998873 2221110
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.. ++...+ .+.....+. .. +.. .....|+|+||||++.+.
T Consensus 121 --~~----~~~~~~-------------------~g~~~~~l~------~~-------f~~--a~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 121 --GS----DFVEMF-------------------VGVGASRVR------DL-------FEQ--AKKNAPCIIFIDEIDAVG 160 (495)
T ss_pred --HH----HHHHHH-------------------hcccHHHHH------HH-------HHH--HHhcCCCEEEEechhhhh
Confidence 00 000000 000000000 00 000 011357899999996653
Q ss_pred H-----------H---HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 177 D-----------H---LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 177 ~-----------~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
. + ..+.|+..|+. + .....+.+|+|+|.. ..+++++++ ||+..+.++.| +.
T Consensus 161 ~~r~~~~~~~~~~~~~~~~~lL~~~d~----~-------~~~~~v~vI~aTn~~-~~ld~al~r~gRfd~~i~i~~P-d~ 227 (495)
T TIGR01241 161 RQRGAGLGGGNDEREQTLNQLLVEMDG----F-------GTNTGVIVIAATNRP-DVLDPALLRPGRFDRQVVVDLP-DI 227 (495)
T ss_pred hccccCcCCccHHHHHHHHHHHhhhcc----c-------cCCCCeEEEEecCCh-hhcCHHHhcCCcceEEEEcCCC-CH
Confidence 2 1 23344444432 1 112357889999954 459999997 89999999988 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccC-HHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQID-HDLKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+.... . ...++ +..+..++..+. |. |.+.+..++..|..
T Consensus 228 ~~R~~il~~~l---------------------------~----~~~~~~~~~l~~la~~t~--G~-sgadl~~l~~eA~~ 273 (495)
T TIGR01241 228 KGREEILKVHA---------------------------K----NKKLAPDVDLKAVARRTP--GF-SGADLANLLNEAAL 273 (495)
T ss_pred HHHHHHHHHHH---------------------------h----cCCCCcchhHHHHHHhCC--CC-CHHHHHHHHHHHHH
Confidence 77777755321 1 11111 112223333322 44 67888888888888
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
.|..++...|+.+|+..|+..+..
T Consensus 274 ~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 274 LAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHhc
Confidence 888888889999999999997654
No 85
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.60 E-value=4.7e-15 Score=126.61 Aligned_cols=244 Identities=17% Similarity=0.210 Sum_probs=149.3
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe---eEEecCCCCChhHHHHHHHhccCcceeecC-CCCCCCCCCcchh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG---VMIMGDRGTGKSTTVRSLVDLLPVIKVVVG-DPYNSDPEDPEAM 102 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~---vlL~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~~~~~~~~~~ 102 (369)
++++|. .+.+|+|+++.++.+..-. ..|+ ++|.||||+||||.+.++++.+-...+.-+ ..++..
T Consensus 19 eKYrP~-~l~dIVGNe~tv~rl~via---~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS------- 87 (333)
T KOG0991|consen 19 EKYRPS-VLQDIVGNEDTVERLSVIA---KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS------- 87 (333)
T ss_pred HhhCch-HHHHhhCCHHHHHHHHHHH---HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc-------
Confidence 334444 6889999999999998877 4554 999999999999999999998843221000 000000
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
+-+ +.+....+ .+.+......+.+|... |++|||.+.+....|++
T Consensus 88 --deR---------------------GIDvVRn~-------IK~FAQ~kv~lp~grhK-----IiILDEADSMT~gAQQA 132 (333)
T KOG0991|consen 88 --DER---------------------GIDVVRNK-------IKMFAQKKVTLPPGRHK-----IIILDEADSMTAGAQQA 132 (333)
T ss_pred --ccc---------------------ccHHHHHH-------HHHHHHhhccCCCCcee-----EEEeeccchhhhHHHHH
Confidence 000 00000000 01111222223344444 99999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|+= +.....+..++|. ..++-+++.+||.+ +.+...++.+...+++
T Consensus 133 lRRtMEi-------------yS~ttRFalaCN~-s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~--------------- 182 (333)
T KOG0991|consen 133 LRRTMEI-------------YSNTTRFALACNQ-SEKIIEPIQSRCAI-LRYSKLSDQQILKRLL--------------- 182 (333)
T ss_pred HHHHHHH-------------Hcccchhhhhhcc-hhhhhhhHHhhhHh-hhhcccCHHHHHHHHH---------------
Confidence 9999983 1234456677774 44689999999997 7777775544333332
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHH-HHHHHcC------CCCCCHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAK-ALAALKG------RDKVSAEDIA 335 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~-a~A~l~~------~~~v~~~~i~ 335 (369)
++.++ +++.++++.+++|...+.. ..|.+.+-++..- .....++ .+.=+|..+.
T Consensus 183 -----------~v~k~----Ekv~yt~dgLeaiifta~G----DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991|consen 183 -----------EVAKA----EKVNYTDDGLEAIIFTAQG----DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred -----------HHHHH----hCCCCCcchHHHhhhhccc----hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHH
Confidence 23333 3789999999999888863 4577766554422 1112121 1233566677
Q ss_pred HHHhHHhcccccC-------CCCCCCChhHHHHHHHH
Q 017575 336 TVMPNCLRHRLRK-------DPLESIDSGLLIIEKFY 365 (369)
Q Consensus 336 ~a~~~vl~~r~~~-------~~~~~~~~~~~~~~~~~ 365 (369)
++++.++...+.. .++.+.+++++|-..++
T Consensus 244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7777776654422 33456677777665554
No 86
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.59 E-value=2.3e-14 Score=147.76 Aligned_cols=231 Identities=22% Similarity=0.257 Sum_probs=141.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|+++.++.+...+......+++|+||||||||++++.++..+.... .+.... ......-++..... +
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~----~p~~l~--~~~~~~~~~~~l~a-~ 252 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGK----VPENLK--NAKIYSLDMGSLLA-G 252 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCC----Cchhhc--CCeEEEecHHHHhh-h
Confidence 5678999999888776555322333499999999999999999998873211 000000 00000000000000 0
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC---------HHHHHHHH
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD---------DHLVDVLL 184 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~---------~~~~~~L~ 184 (369)
. ...+..+..+...++ ......+.|+||||++.+- .+.++.|.
T Consensus 253 ~-------------~~~g~~e~~l~~i~~---------------~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~ 304 (731)
T TIGR02639 253 T-------------KYRGDFEERLKAVVS---------------EIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK 304 (731)
T ss_pred c-------------cccchHHHHHHHHHH---------------HHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHH
Confidence 0 000000001000000 0111236799999997663 34566677
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHH
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEF 260 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~ 260 (369)
..|+++ .+.+|+++|+.++ ..+++|.+||.. +.+..| +.+....|+...
T Consensus 305 ~~l~~g---------------~i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~~p-~~~~~~~il~~~---------- 357 (731)
T TIGR02639 305 PALSSG---------------KLRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVGEP-SIEETVKILKGL---------- 357 (731)
T ss_pred HHHhCC---------------CeEEEEecCHHHHHHHhhhhHHHHHhCce-EEeCCC-CHHHHHHHHHHH----------
Confidence 766653 4668899986442 378999999985 999999 466666775521
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHcC----CCCCCHHHH
Q 017575 261 RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALKG----RDKVSAEDI 334 (369)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~~----~~~v~~~~i 334 (369)
.........+.++++++..+..++.++-.+ -++.++++++-|.+...++. ...|+.+|+
T Consensus 358 ---------------~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i 422 (731)
T TIGR02639 358 ---------------KEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDI 422 (731)
T ss_pred ---------------HHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHH
Confidence 111223346899999999999999865321 36788999998888777653 245999999
Q ss_pred HHHHhHH
Q 017575 335 ATVMPNC 341 (369)
Q Consensus 335 ~~a~~~v 341 (369)
..++...
T Consensus 423 ~~~i~~~ 429 (731)
T TIGR02639 423 ENVVAKM 429 (731)
T ss_pred HHHHHHH
Confidence 9998864
No 87
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.59 E-value=2.5e-14 Score=143.05 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=145.3
Q ss_pred CCCCccccChHHHHHHhhhhhccC--CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCC---CCCCCcchhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDP--KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN---SDPEDPEAMGIEV 106 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~--~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 106 (369)
...+..++|+......+.-.+... ....|+|.|++||||+++|++|+...... ..+|. +.......+.+.+
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~----~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA----KRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC----CCCeEEeecCCCCHHHHHHHH
Confidence 357889999887655544333111 22239999999999999999999887522 12221 1111111222222
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
++ ... ..+ .+......|.+..++++++||||++.+++..|..|+.+
T Consensus 268 fg-------------------------------~~~--~~~-~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~ 313 (534)
T TIGR01817 268 FG-------------------------------HEK--GAF-TGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRV 313 (534)
T ss_pred cC-------------------------------CCC--Ccc-CCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHH
Confidence 21 100 000 11112246777788999999999999999999999999
Q ss_pred HhcCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChH
Q 017575 187 AASGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKE 259 (369)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~ 259 (369)
++++.+.-. |.....+.++.+|++++... +.+.+.|+.|+.. .|.+|+. ++...+|...-
T Consensus 314 l~~~~~~~~--~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpL--reR~eDi~~L~--------- 380 (534)
T TIGR01817 314 LQEGEFERV--GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPL--RERREDIPLLA--------- 380 (534)
T ss_pred HhcCcEEEC--CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCc--ccccccHHHHH---------
Confidence 998765432 33334456788999888542 4588899999965 3455555 43334442211
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 260 FRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
..+..++.. .....+.++++++..|..+....|+ |.+.+++..+.. ....+.|+.+|+.
T Consensus 381 ---------~~~l~~~~~--~~~~~~~~s~~a~~~L~~~~WPGNv---rEL~~v~~~a~~---~~~~~~I~~~~l~ 439 (534)
T TIGR01817 381 ---------EAFLEKFNR--ENGRPLTITPSAIRVLMSCKWPGNV---RELENCLERTAT---LSRSGTITRSDFS 439 (534)
T ss_pred ---------HHHHHHHHH--HcCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHHHH---hCCCCcccHHHCc
Confidence 111112211 1222378999999999988765444 888777776543 3445678888875
No 88
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.58 E-value=5.5e-14 Score=144.60 Aligned_cols=253 Identities=15% Similarity=0.202 Sum_probs=145.2
Q ss_pred eeccchhhhhHHHHhHhhhhcCCCCCCCccccChHHHHHHhhhhhc-----cCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 8 VTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVI-----DPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~-----~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
|...+..-.++.++++.++. +.+|.+.+++.+...+. ....|. ++|+||||+|||++++.+++.+
T Consensus 303 w~~~~~~~~~~~~~~~~l~~---------~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 303 WNARSKVKKDLRQAQEILDT---------DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred CCCCCcccccHHHHHHHhhh---------hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44444444566666666544 47899999888863321 112344 9999999999999999999988
Q ss_pred CcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh-
Q 017575 82 PVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA- 160 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~- 160 (369)
... +..+.........++.+.- ....|. .+|.+.
T Consensus 374 ~~~-------~~~i~~~~~~d~~~i~g~~------------------------~~~~g~--------------~~G~~~~ 408 (784)
T PRK10787 374 GRK-------YVRMALGGVRDEAEIRGHR------------------------RTYIGS--------------MPGKLIQ 408 (784)
T ss_pred CCC-------EEEEEcCCCCCHHHhccch------------------------hccCCC--------------CCcHHHH
Confidence 532 1111100000011111100 000000 012111
Q ss_pred -----hcCCCeEEEeCCCCCCHHH----HHHHHHHHhcCCc-eeeecceeeeec-CceEEEeecCCCCCCCCHhHHhhhc
Q 017575 161 -----KANRGILYVDEVNLLDDHL----VDVLLDSAASGWN-TVEREGISISHP-ARFILIGSGNPEEGELRPQLLDRFG 229 (369)
Q Consensus 161 -----~a~~~vl~lDE~~~l~~~~----~~~L~~~l~~~~~-~~~~~~~~~~~~-~~~~li~t~n~~~~~l~~al~~R~~ 229 (369)
...+.|+||||++++.+.. ++.|+++|+..+. .+.-....+..+ .++.+|+|+|.. .+++||++||.
T Consensus 409 ~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~~ 486 (784)
T PRK10787 409 KMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPAPLLDRME 486 (784)
T ss_pred HHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCHHHhccee
Confidence 1245699999999998765 5999999986542 222111122333 467889999964 49999999998
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHH-HHHcCCCCCc
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKV-CAELNVDGLR 308 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~s~R 308 (369)
+ +.+.++ ..+....|+.... ..+.+.+.......+.+++++...|.+. ..+.| +|
T Consensus 487 i-i~~~~~-t~eek~~Ia~~~L-------------------~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G---aR 542 (784)
T PRK10787 487 V-IRLSGY-TEDEKLNIAKRHL-------------------LPKQIERNALKKGELTVDDSAIIGIIRYYTREAG---VR 542 (784)
T ss_pred e-eecCCC-CHHHHHHHHHHhh-------------------hHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC---Cc
Confidence 6 888777 4666767766431 1122222222223588999999988763 33344 47
Q ss_pred hhHHHHHHHH-HH---HHHcCC---CCCCHHHHHHHHhH
Q 017575 309 GDIVSNRAAK-AL---AALKGR---DKVSAEDIATVMPN 340 (369)
Q Consensus 309 ~~~~ll~~a~-a~---A~l~~~---~~v~~~~i~~a~~~ 340 (369)
.+.+.+.... .. ..+.+. -.|+.+++.+.+..
T Consensus 543 ~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 543 SLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 6555444332 22 222332 15788888877663
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=3.5e-14 Score=144.97 Aligned_cols=214 Identities=16% Similarity=0.207 Sum_probs=130.2
Q ss_pred cccChHHHHHHhhhhhcc---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhh
Q 017575 37 AIVGQEEMKLCLLLNVID---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
.++||+++++.+..++.. ...+.++|+||||||||++|+.++..+. .++..... .....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-------~~~i~id~--se~~~--- 526 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-------IELLRFDM--SEYME--- 526 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-------CCcEEeec--hhhcc---
Confidence 478999998888777641 1124599999999999999999999883 22211110 00000
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhccccc-ccchhh----hcCCCeEEEeCCCCCCHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAF-EPGLLA----KANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~----~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
......++|.- .|...+ ..|.+. ....+|+||||++++++++++.
T Consensus 527 -----------------------~~~~~~LiG~~-------~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~ 576 (758)
T PRK11034 527 -----------------------RHTVSRLIGAP-------PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNL 576 (758)
T ss_pred -----------------------cccHHHHcCCC-------CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHH
Confidence 00001111100 000000 012221 2245799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCC------------------------CCCCHhHHhhhccceeecCCC
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEE------------------------GELRPQLLDRFGMHAQVGTVR 238 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------------------------~~l~~al~~R~~~~i~~~~~~ 238 (369)
|+++|+++.++-. .|.++.. .++.+|+|+|... ..+.++|+.|++..+.++++
T Consensus 577 LLq~ld~G~ltd~-~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L- 653 (758)
T PRK11034 577 LLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL- 653 (758)
T ss_pred HHHHHhcCeeecC-CCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCC-
Confidence 9999999887643 2443332 4677888888320 12779999999987888877
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
+.+....|+... +.+.-.......-.+.+++++.++|++....... ++|.+.+++..
T Consensus 654 ~~~~l~~I~~~~--------------------l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~r~i~~ 710 (758)
T PRK11034 654 STDVIHQVVDKF--------------------IVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAM-GARPMARVIQD 710 (758)
T ss_pred CHHHHHHHHHHH--------------------HHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCC-CCchHHHHHHH
Confidence 455556775532 1111122223345689999999999876544333 45766665543
No 90
>CHL00176 ftsH cell division protein; Validated
Probab=99.58 E-value=6.4e-14 Score=140.72 Aligned_cols=223 Identities=21% Similarity=0.229 Sum_probs=132.6
Q ss_pred CCCCCccccChHHHHHHhhhhh---ccC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNV---IDP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPED 98 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l---~~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 98 (369)
+...|+++.|.+++++.+...+ ..+ ...+++|+||||||||++|+++++... .++..+.
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-------~p~i~is-- 248 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-------VPFFSIS-- 248 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeeecc--
Confidence 3457899999887766553332 111 122499999999999999999998762 2222111
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC--
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 176 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~-- 176 (369)
+........+ .....+ ... +.. .....|+|+||||++.+.
T Consensus 249 ~s~f~~~~~g-----------------------~~~~~v------r~l-------F~~--A~~~~P~ILfIDEID~l~~~ 290 (638)
T CHL00176 249 GSEFVEMFVG-----------------------VGAARV------RDL-------FKK--AKENSPCIVFIDEIDAVGRQ 290 (638)
T ss_pred HHHHHHHhhh-----------------------hhHHHH------HHH-------HHH--HhcCCCcEEEEecchhhhhc
Confidence 0000000000 000000 000 000 112357899999997663
Q ss_pred ---------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHHH
Q 017575 177 ---------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRVK 245 (369)
Q Consensus 177 ---------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~~ 245 (369)
.+.+..|.+++..- . + ......+.+|+++|..+ .+++++++ ||+..+.++.| +.+.+..
T Consensus 291 r~~~~~~~~~e~~~~L~~LL~~~----d--g--~~~~~~ViVIaaTN~~~-~LD~ALlRpGRFd~~I~v~lP-d~~~R~~ 360 (638)
T CHL00176 291 RGAGIGGGNDEREQTLNQLLTEM----D--G--FKGNKGVIVIAATNRVD-ILDAALLRPGRFDRQITVSLP-DREGRLD 360 (638)
T ss_pred ccCCCCCCcHHHHHHHHHHHhhh----c--c--ccCCCCeeEEEecCchH-hhhhhhhccccCceEEEECCC-CHHHHHH
Confidence 33444555555431 0 1 11134678899999543 58999987 89999999998 5677777
Q ss_pred HHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcC
Q 017575 246 IVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKG 325 (369)
Q Consensus 246 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~ 325 (369)
|+.... .. ....++..+..++..+ .|. |.+.+.+++.-|...|..++
T Consensus 361 IL~~~l---------------------------~~---~~~~~d~~l~~lA~~t--~G~-sgaDL~~lvneAal~a~r~~ 407 (638)
T CHL00176 361 ILKVHA---------------------------RN---KKLSPDVSLELIARRT--PGF-SGADLANLLNEAAILTARRK 407 (638)
T ss_pred HHHHHH---------------------------hh---cccchhHHHHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHhC
Confidence 765321 00 0111222233333322 244 67899999998888888888
Q ss_pred CCCCCHHHHHHHHhHHhc
Q 017575 326 RDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 326 ~~~v~~~~i~~a~~~vl~ 343 (369)
...|+.+|+..|+..+..
T Consensus 408 ~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 408 KATITMKEIDTAIDRVIA 425 (638)
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 899999999999988744
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.1e-14 Score=140.92 Aligned_cols=232 Identities=18% Similarity=0.279 Sum_probs=136.8
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++++|. .|++++||+.++..+.-.+....-.+ +||+||+|+|||++|++++..+.-.....+.+|+.. ..
T Consensus 8 ~KyRP~-sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C--------~s 78 (624)
T PRK14959 8 ARYRPQ-TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC--------EQ 78 (624)
T ss_pred HHhCCC-CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc--------HH
Confidence 344454 89999999999988888874222123 999999999999999999998842110001112110 01
Q ss_pred hhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
+..+ ..+... .++.+.. ....+. ...+... ..+. . ..++..|+||||+++++...++.|
T Consensus 79 C~~i-~~g~hp-------Dv~eId~a~~~~Id~-------iR~L~~~-~~~~--p-~~g~~kVIIIDEad~Lt~~a~naL 139 (624)
T PRK14959 79 CRKV-TQGMHV-------DVVEIDGASNRGIDD-------AKRLKEA-IGYA--P-MEGRYKVFIIDEAHMLTREAFNAL 139 (624)
T ss_pred HHHH-hcCCCC-------ceEEEecccccCHHH-------HHHHHHH-HHhh--h-hcCCceEEEEEChHhCCHHHHHHH
Confidence 1111 111110 0101100 000000 0001000 0000 0 123456999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
++.|++- +..+.+|+++|. ...+...+.+||.. +++.+++. +....++.
T Consensus 140 Lk~LEEP-------------~~~~ifILaTt~-~~kll~TI~SRcq~-i~F~pLs~-~eL~~~L~--------------- 188 (624)
T PRK14959 140 LKTLEEP-------------PARVTFVLATTE-PHKFPVTIVSRCQH-FTFTRLSE-AGLEAHLT--------------- 188 (624)
T ss_pred HHHhhcc-------------CCCEEEEEecCC-hhhhhHHHHhhhhc-cccCCCCH-HHHHHHHH---------------
Confidence 9999861 234555555552 33578889999975 88888854 33333322
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 264 YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
++.. ...+.++++++..|+.++.. +.|.+++++..+ + ..+.+.|+.+++..++.
T Consensus 189 ----------~il~----~egi~id~eal~lIA~~s~G----dlR~Al~lLeql---l-~~g~~~It~d~V~~~lg 242 (624)
T PRK14959 189 ----------KVLG----REGVDYDPAAVRLIARRAAG----SVRDSMSLLGQV---L-ALGESRLTIDGARGVLG 242 (624)
T ss_pred ----------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH---H-HhcCCCcCHHHHHHHhC
Confidence 1111 22467999999998887752 679888888754 2 23556899998877664
No 92
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.58 E-value=3.4e-14 Score=140.94 Aligned_cols=241 Identities=19% Similarity=0.156 Sum_probs=148.8
Q ss_pred CCccccChHHHHHHhhhhhccCC--CCeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPK--IGGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~--~g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++..++|+......+.-.+...+ ...|+|+|++||||+++|++|....+... .+...+|.. .....+.+++++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~--~~~~~~e~~lfG~- 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAA--LPESLAESELFGH- 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEccc--CChHHHHHHhcCc-
Confidence 56678998877555443332112 22399999999999999999998875321 111111111 1111122222211
Q ss_pred hccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcC
Q 017575 111 VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASG 190 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~ 190 (369)
.. ..+ .|...-..|.+..++++++||||++.+++..|..|+.+++++
T Consensus 262 ------------------------------~~--g~~-~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~ 308 (509)
T PRK05022 262 ------------------------------VK--GAF-TGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYG 308 (509)
T ss_pred ------------------------------cc--ccc-CCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcC
Confidence 00 000 111122467788899999999999999999999999999987
Q ss_pred CceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 191 WNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
.+.-. |.....+.++.+|+++|... +.+.+.|.+|+.. +.+.-|+.++...+|....
T Consensus 309 ~~~~~--g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~-------------- 371 (509)
T PRK05022 309 EIQRV--GSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLA-------------- 371 (509)
T ss_pred CEeeC--CCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHH--------------
Confidence 65332 44445567889999998542 3588999999875 4444444455555553321
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCC---CCCCHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGR---DKVSAEDIA 335 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~---~~v~~~~i~ 335 (369)
..+..++.. +...+.+.++++++..|..+....|+ |.+.+++..|...+..... ..|+.+|+.
T Consensus 372 ----~~fl~~~~~-~~~~~~~~~s~~a~~~L~~y~WPGNv---rEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 372 ----GYFLEQNRA-RLGLRSLRLSPAAQAALLAYDWPGNV---RELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred ----HHHHHHHHH-HcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 111122211 11124578999999999998876555 9999988887776653211 146666654
No 93
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.3e-14 Score=139.75 Aligned_cols=218 Identities=19% Similarity=0.258 Sum_probs=137.0
Q ss_pred ccccChHHHHHHhhhhhc-------cC--CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVI-------DP--KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~-------~~--~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
..++||++++..++-++. ++ ..|.++|.||+|+|||.||++||..+..+. -..+..+.......
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e------~aliR~DMSEy~Ek- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE------QALIRIDMSEYMEK- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC------ccceeechHHHHHH-
Confidence 357899999999988874 12 123499999999999999999999995321 11111111111100
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---C-CCeEEEeCCCCCCHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---N-RGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~-~~vl~lDE~~~l~~~~~~~ 182 (369)
.+..++.|.---...+.. .|.+..+ + ..|++|||+++..|++++.
T Consensus 564 -------------------------HsVSrLIGaPPGYVGyee------GG~LTEaVRr~PySViLlDEIEKAHpdV~ni 612 (786)
T COG0542 564 -------------------------HSVSRLIGAPPGYVGYEE------GGQLTEAVRRKPYSVILLDEIEKAHPDVFNL 612 (786)
T ss_pred -------------------------HHHHHHhCCCCCCceecc------ccchhHhhhcCCCeEEEechhhhcCHHHHHH
Confidence 011112211100000001 2334333 3 3599999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---------------------------CCCHhHHhhhccceeec
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---------------------------ELRPQLLDRFGMHAQVG 235 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---------------------------~l~~al~~R~~~~i~~~ 235 (369)
|+++|++|..+-++ |.++... +..+|+|+|.... .++|+|++|++-.|.+.
T Consensus 613 lLQVlDdGrLTD~~-Gr~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~ 690 (786)
T COG0542 613 LLQVLDDGRLTDGQ-GRTVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFN 690 (786)
T ss_pred HHHHhcCCeeecCC-CCEEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEecc
Confidence 99999999887653 5555543 6778899885420 27899999999767777
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+. ..+....|+... ...+.+++ ....-.+.+++++...|.+.+..-.. +.|-+.++++
T Consensus 691 ~L-~~~~l~~Iv~~~-----------------L~~l~~~L---~~~~i~l~~s~~a~~~l~~~gyd~~~-GARpL~R~Iq 748 (786)
T COG0542 691 PL-SKEVLERIVDLQ-----------------LNRLAKRL---AERGITLELSDEAKDFLAEKGYDPEY-GARPLRRAIQ 748 (786)
T ss_pred CC-CHHHHHHHHHHH-----------------HHHHHHHH---HhCCceEEECHHHHHHHHHhccCCCc-CchHHHHHHH
Confidence 77 556666775532 11122222 22234688999999999987765333 4576666554
No 94
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.3e-14 Score=141.18 Aligned_cols=234 Identities=19% Similarity=0.327 Sum_probs=137.2
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
..++.+|. .|++++||+.++..+.-++......| ++|.||+|+|||++|+.++..+.-.....+.+|+. |. .
T Consensus 6 ~~~KyRP~-~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~----C~-s- 78 (605)
T PRK05896 6 FYRKYRPH-NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS----CS-V- 78 (605)
T ss_pred HHHHhCCC-CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc----cH-H-
Confidence 34455555 89999999999998888874323345 99999999999999999999884211000111111 10 0
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
+ ..+..+... .++.+... ...+. +.. +.... ...+ ..++..|++|||++++....++
T Consensus 79 --C-r~i~~~~h~-------DiieIdaas~igVd~------IRe-Ii~~~-~~~P---~~~~~KVIIIDEad~Lt~~A~N 137 (605)
T PRK05896 79 --C-ESINTNQSV-------DIVELDAASNNGVDE------IRN-IIDNI-NYLP---TTFKYKVYIIDEAHMLSTSAWN 137 (605)
T ss_pred --H-HHHHcCCCC-------ceEEeccccccCHHH------HHH-HHHHH-Hhch---hhCCcEEEEEechHhCCHHHHH
Confidence 0 000001000 01111000 00010 000 00000 0011 1235679999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|+..|++ .|....+|++++. ...+.+++++||.. +.+.+++. +.....+..
T Consensus 138 aLLKtLEE-------------Pp~~tvfIL~Tt~-~~KLl~TI~SRcq~-ieF~~Ls~-~eL~~~L~~------------ 189 (605)
T PRK05896 138 ALLKTLEE-------------PPKHVVFIFATTE-FQKIPLTIISRCQR-YNFKKLNN-SELQELLKS------------ 189 (605)
T ss_pred HHHHHHHh-------------CCCcEEEEEECCC-hHhhhHHHHhhhhh-cccCCCCH-HHHHHHHHH------------
Confidence 99999987 2334555555542 35688999999975 88888854 333333221
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+.. ...+.++++++..+...+.. ++|.+.+++....+ +.+.. |+.+++.+++.
T Consensus 190 -------------il~----kegi~Is~eal~~La~lS~G----dlR~AlnlLekL~~---y~~~~-It~e~V~ellg 242 (605)
T PRK05896 190 -------------IAK----KEKIKIEDNAIDKIADLADG----SLRDGLSILDQLST---FKNSE-IDIEDINKTFG 242 (605)
T ss_pred -------------HHH----HcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHh---hcCCC-CCHHHHHHHhc
Confidence 111 12467899998888877742 67888887776433 33433 88888877544
No 95
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.57 E-value=3e-14 Score=137.79 Aligned_cols=205 Identities=18% Similarity=0.255 Sum_probs=127.5
Q ss_pred CCCccccChHHHHHH---hhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLC---LLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~---l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
..|++++||+.++.. +...+......+++|+|||||||||+|+.++...... +......
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~----------- 70 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAV----------- 70 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecc-----------
Confidence 478999999988544 5555532233359999999999999999999876321 1000000
Q ss_pred hhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 110 VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
......+... +..... .....++.++||||++++....++.|+..+++
T Consensus 71 ---------------------~~~~~~ir~i------i~~~~~-----~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~ 118 (413)
T PRK13342 71 ---------------------TSGVKDLREV------IEEARQ-----RRSAGRRTILFIDEIHRFNKAQQDALLPHVED 118 (413)
T ss_pred ---------------------cccHHHHHHH------HHHHHH-----hhhcCCceEEEEechhhhCHHHHHHHHHHhhc
Confidence 0000000000 000000 00122467999999999999999999999986
Q ss_pred CCceeeecceeeeecCceEEEeecCC-CCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHH
Q 017575 190 GWNTVEREGISISHPARFILIGSGNP-EEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQ 268 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~t~n~-~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 268 (369)
+. +.+|++++. ....+.+++++||.+ +.+.+++ .+....++...
T Consensus 119 ~~---------------iilI~att~n~~~~l~~aL~SR~~~-~~~~~ls-~e~i~~lL~~~------------------ 163 (413)
T PRK13342 119 GT---------------ITLIGATTENPSFEVNPALLSRAQV-FELKPLS-EEDIEQLLKRA------------------ 163 (413)
T ss_pred Cc---------------EEEEEeCCCChhhhccHHHhcccee-eEeCCCC-HHHHHHHHHHH------------------
Confidence 42 334544332 233588999999965 8888885 44444444321
Q ss_pred HHHHHHHHHHHhhCCC-cccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 269 AKLQQQIASARSSLPA-VQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 269 ~~~~~~i~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
+.... .. +.++++++..|..++. . +.|.+.+++..+... ...|+.+++..++..
T Consensus 164 ------l~~~~---~~~i~i~~~al~~l~~~s~---G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 164 ------LEDKE---RGLVELDDEALDALARLAN---G-DARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred ------HHHhh---cCCCCCCHHHHHHHHHhCC---C-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 11111 12 3788999888877762 2 568888888776544 457999999988875
No 96
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.57 E-value=3.9e-14 Score=131.29 Aligned_cols=239 Identities=22% Similarity=0.214 Sum_probs=149.1
Q ss_pred Cc-cccChHHHHHHhhhhhccCCC-----Ce-eEEecCCCCChhHHHHHHHhccCcce-------e-ecC----CCCCCC
Q 017575 35 FT-AIVGQEEMKLCLLLNVIDPKI-----GG-VMIMGDRGTGKSTTVRSLVDLLPVIK-------V-VVG----DPYNSD 95 (369)
Q Consensus 35 ~~-~i~G~~~~~~~l~~~l~~~~~-----g~-vlL~Gp~G~GKTtla~~la~~l~~~~-------~-~~~----~~~~~~ 95 (369)
|. +++|+++++..+...+..... .. ++|+|||||||||++++|++.+.... + +.+ +++...
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 55 799999887776555432112 22 89999999999999999999986531 1 112 222221
Q ss_pred CCCcchhhhhhhhhhhcc----------ccchhhh---------------hccccc---------cC-CCC---CchHhh
Q 017575 96 PEDPEAMGIEVRESVVKG----------EELSITF---------------SKINMV---------DL-PLG---ATEDRV 137 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~----------~~~~~~~---------------~~~~~~---------~~-~~~---~~~~~~ 137 (369)
+. .+.+.+....+... ...++-. +..-.+ .. |.+ +....+
T Consensus 129 Pl--~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L 206 (361)
T smart00763 129 PL--HLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISEL 206 (361)
T ss_pred Cc--ccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHH
Confidence 11 11122211111100 0001100 000000 00 111 123345
Q ss_pred hcccchhHHhh---hcccccc-cchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeec
Q 017575 138 CGTIDIEKALT---EGVKAFE-PGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSG 213 (369)
Q Consensus 138 ~~~~~~~~~~~---~g~~~~~-~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~ 213 (369)
.|.+|..+... +....+. .|.+.++|.|++-++|+.+++.+.+..|+.+++++.+.+. +.....+.+..+|+++
T Consensus 207 ~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~s 284 (361)
T smart00763 207 TGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHS 284 (361)
T ss_pred hcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeC
Confidence 67666654331 2223345 4899999999999999999999999999999999988765 4444556677999999
Q ss_pred CCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCccc
Q 017575 214 NPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQI 287 (369)
Q Consensus 214 n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 287 (369)
|+.+ .+..+||+|||.. +.++++..-....+|.... +.. .....+.+
T Consensus 285 Ne~e~~~~~~~k~~eaf~dR~~~-i~vpY~l~~~~E~~Iy~k~------------------------~~~--s~~~~~~~ 337 (361)
T smart00763 285 NESEWQRFKSNKKNEALLDRIIK-VKVPYCLRVSEEAQIYEKL------------------------LRN--SDLTEAHI 337 (361)
T ss_pred CHHHHhhhhccccchhhhhceEE-EeCCCcCCHHHHHHHHHHH------------------------hcc--CcCccccc
Confidence 9874 3467999999985 9999998877777775422 111 11335788
Q ss_pred CHHHHHHHHHHHHHcCC
Q 017575 288 DHDLKVKISKVCAELNV 304 (369)
Q Consensus 288 ~~~~~~~l~~~~~~~~~ 304 (369)
++.+++.++.++.-.++
T Consensus 338 aP~~le~aa~~avltRL 354 (361)
T smart00763 338 APHTLEMAALFSVLTRL 354 (361)
T ss_pred CchHHHHHHHHHHHhhc
Confidence 89899888888775554
No 97
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.57 E-value=3.7e-14 Score=138.19 Aligned_cols=220 Identities=19% Similarity=0.194 Sum_probs=131.4
Q ss_pred CCCCCccccChHHHHHHhhhhhc---------c-CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcc
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVI---------D-PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPE 100 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~---------~-~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 100 (369)
+...|+++.|.+.+++.+..... . +...++||+||||||||++|+++++.+. .++.... +
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~-------~~~~~l~--~- 292 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ-------LPLLRLD--V- 292 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-------CCEEEEE--h-
Confidence 44578889998777665542110 0 1233499999999999999999999884 2211100 0
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH---
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD--- 177 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~--- 177 (369)
..+. ....+.++..+...+ . ......|+|+||||++.+-.
T Consensus 293 ---~~l~-------------------~~~vGese~~l~~~f-------------~--~A~~~~P~IL~IDEID~~~~~~~ 335 (489)
T CHL00195 293 ---GKLF-------------------GGIVGESESRMRQMI-------------R--IAEALSPCILWIDEIDKAFSNSE 335 (489)
T ss_pred ---HHhc-------------------ccccChHHHHHHHHH-------------H--HHHhcCCcEEEehhhhhhhcccc
Confidence 0000 000001111100000 0 01123689999999964321
Q ss_pred ---------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHHHH
Q 017575 178 ---------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 178 ---------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~~i 246 (369)
.+...|+..|++. ..++++|+|+|. +..+++++++ ||+..+.++.| +.+.+..|
T Consensus 336 ~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~vIaTTN~-~~~Ld~allR~GRFD~~i~v~lP-~~~eR~~I 400 (489)
T CHL00195 336 SKGDSGTTNRVLATFITWLSEK-------------KSPVFVVATANN-IDLLPLEILRKGRFDEIFFLDLP-SLEEREKI 400 (489)
T ss_pred CCCCchHHHHHHHHHHHHHhcC-------------CCceEEEEecCC-hhhCCHHHhCCCcCCeEEEeCCc-CHHHHHHH
Confidence 2345556666531 246788999994 4469999997 99998999999 56777777
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCC
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGR 326 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~ 326 (369)
+... +.+.. . ...++.-++.|+..+. |+ |.+.+..++.-|...|...++
T Consensus 401 l~~~------------------------l~~~~---~-~~~~~~dl~~La~~T~--Gf-SGAdI~~lv~eA~~~A~~~~~ 449 (489)
T CHL00195 401 FKIH------------------------LQKFR---P-KSWKKYDIKKLSKLSN--KF-SGAEIEQSIIEAMYIAFYEKR 449 (489)
T ss_pred HHHH------------------------HhhcC---C-CcccccCHHHHHhhcC--CC-CHHHHHHHHHHHHHHHHHcCC
Confidence 6532 11111 0 0111222334444443 55 778899999999888887765
Q ss_pred CCCCHHHHHHHHhHHhcc
Q 017575 327 DKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 327 ~~v~~~~i~~a~~~vl~~ 344 (369)
+ ++.+|+..|+..+...
T Consensus 450 ~-lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 450 E-FTTDDILLALKQFIPL 466 (489)
T ss_pred C-cCHHHHHHHHHhcCCC
Confidence 5 8999999999866543
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.4e-14 Score=142.74 Aligned_cols=244 Identities=21% Similarity=0.317 Sum_probs=143.6
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecC-CCCCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVG-DPYNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~ 104 (369)
++++| ..|++++||+.+++.+.-.+......| ++|+||+|+||||+|++++..+.-...... .+.. .++....
T Consensus 16 ~KyRP-~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~ 90 (598)
T PRK09111 16 RKYRP-QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGE 90 (598)
T ss_pred hhhCC-CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccH
Confidence 44445 589999999999999988884322234 999999999999999999998842110000 0000 0000000
Q ss_pred hhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
.+ ..+..+... .++.+... +..+.-++...+.. ....+ ..++..|+||||++++....++.|+
T Consensus 91 ~C-~~i~~g~h~-------Dv~e~~a~----s~~gvd~IReIie~--~~~~P---~~a~~KVvIIDEad~Ls~~a~naLL 153 (598)
T PRK09111 91 HC-QAIMEGRHV-------DVLEMDAA----SHTGVDDIREIIES--VRYRP---VSARYKVYIIDEVHMLSTAAFNALL 153 (598)
T ss_pred HH-HHHhcCCCC-------ceEEeccc----ccCCHHHHHHHHHH--HHhch---hcCCcEEEEEEChHhCCHHHHHHHH
Confidence 11 111111100 01111100 00000011111110 00111 1245679999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
+.|++ .+.++.||++++.. .++...+.+||.. +.+..++. +....++..
T Consensus 154 KtLEe-------------Pp~~~~fIl~tte~-~kll~tI~SRcq~-~~f~~l~~-~el~~~L~~--------------- 202 (598)
T PRK09111 154 KTLEE-------------PPPHVKFIFATTEI-RKVPVTVLSRCQR-FDLRRIEA-DVLAAHLSR--------------- 202 (598)
T ss_pred HHHHh-------------CCCCeEEEEEeCCh-hhhhHHHHhheeE-EEecCCCH-HHHHHHHHH---------------
Confidence 99987 23456666665532 3478889999975 88988853 333333321
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
+.. ...+.++++++.+|...+.. +.|.+.+++..+... +...|+.++|+.++......
T Consensus 203 ----------i~~----kegi~i~~eAl~lIa~~a~G----dlr~al~~Ldkli~~----g~g~It~e~V~~llg~~~~~ 260 (598)
T PRK09111 203 ----------IAA----KEGVEVEDEALALIARAAEG----SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLGLADRA 260 (598)
T ss_pred ----------HHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhCCCCHH
Confidence 111 22578999999888887742 679888888765432 34579999999887754443
Q ss_pred c
Q 017575 345 R 345 (369)
Q Consensus 345 r 345 (369)
+
T Consensus 261 ~ 261 (598)
T PRK09111 261 R 261 (598)
T ss_pred H
Confidence 3
No 99
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.57 E-value=4.6e-14 Score=132.07 Aligned_cols=222 Identities=21% Similarity=0.203 Sum_probs=133.4
Q ss_pred CccccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
+..++|.......+.-.+.. .....|+|+|++||||+++|++|....+... .+...+|. ......+...+++.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~--~~~~~~~~~~lfg~-- 80 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA--ALNENLLDSELFGH-- 80 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCC--CCCHHHHHHHHccc--
Confidence 45678877654444322211 1233499999999999999999997764221 11111111 11111122222210
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
.. .. ..|......|.+..++++++||||++.+++..|..|+.+++++.
T Consensus 81 -----------------------------~~--~~-~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 81 -----------------------------EA--GA-FTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred -----------------------------cc--cc-cCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 00 00 01112223677888999999999999999999999999999876
Q ss_pred ceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 192 NTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
+.-. |.....+.++.+|++++.. .+.+.++|++||.. .|.+|+. ++...+|...-
T Consensus 129 ~~~~--g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpL--ReR~eDI~~L~-------------- 190 (326)
T PRK11608 129 LERV--GGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPL--RERQSDIMLMA-------------- 190 (326)
T ss_pred EEeC--CCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCCh--hhhhhhHHHHH--------------
Confidence 4432 4444556678999998854 24588999999954 5556555 45444553321
Q ss_pred HHHHHHHHHHHHHHHhhCCC--cccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPA--VQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
..+..++. ...... ..++++++..|..+....|+ |.+.+++..+..
T Consensus 191 ----~~fl~~~~--~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~vl~~a~~ 238 (326)
T PRK11608 191 ----EHFAIQMC--RELGLPLFPGFTERARETLLNYRWPGNI---RELKNVVERSVY 238 (326)
T ss_pred ----HHHHHHHH--HHhCCCCCCCCCHHHHHHHHhCCCCcHH---HHHHHHHHHHHH
Confidence 11111221 112222 36899999999988876554 888777776554
No 100
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8.5e-14 Score=136.63 Aligned_cols=235 Identities=17% Similarity=0.257 Sum_probs=138.7
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++.+|. .|++++||+.++..+...+....-+| ++|+||||+||||+|++++..+.-.... ..+|.... .|....
T Consensus 6 ~KyRP~-~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~-~~~cg~C~-sc~~i~-- 80 (504)
T PRK14963 6 QRARPI-TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGED-PKPCGECE-SCLAVR-- 80 (504)
T ss_pred HhhCCC-CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCC-CCCCCcCh-hhHHHh--
Confidence 445555 89999999999999888874333446 6999999999999999999988421100 00111000 000000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
. ..+. .+..+..... .+ .+....+... ....+ ..++..++||||++.++...++.|+.
T Consensus 81 --~-~~h~----------dv~el~~~~~----~~-vd~iR~l~~~---~~~~p-~~~~~kVVIIDEad~ls~~a~naLLk 138 (504)
T PRK14963 81 --R-GAHP----------DVLEIDAASN----NS-VEDVRDLREK---VLLAP-LRGGRKVYILDEAHMMSKSAFNALLK 138 (504)
T ss_pred --c-CCCC----------ceEEeccccc----CC-HHHHHHHHHH---Hhhcc-ccCCCeEEEEECccccCHHHHHHHHH
Confidence 0 0000 0111100000 00 0000111000 00001 12456799999999999999999999
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYK 265 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 265 (369)
.|++. +..+.+|+++|. ...+.+++.+||.. +.+.+++..+.. ..+..
T Consensus 139 ~LEep-------------~~~t~~Il~t~~-~~kl~~~I~SRc~~-~~f~~ls~~el~-~~L~~---------------- 186 (504)
T PRK14963 139 TLEEP-------------PEHVIFILATTE-PEKMPPTILSRTQH-FRFRRLTEEEIA-GKLRR---------------- 186 (504)
T ss_pred HHHhC-------------CCCEEEEEEcCC-hhhCChHHhcceEE-EEecCCCHHHHH-HHHHH----------------
Confidence 99861 234455555552 34688999999975 999888544433 33221
Q ss_pred HHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 266 AEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
+.. ...+.++++++.+|.+.+.. +.|.+.+.+..+.+. ...|+.+++.+++....
T Consensus 187 ---------i~~----~egi~i~~~Al~~ia~~s~G----dlR~aln~Lekl~~~-----~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 187 ---------LLE----AEGREAEPEALQLVARLADG----AMRDAESLLERLLAL-----GTPVTRKQVEEALGLPP 241 (504)
T ss_pred ---------HHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHCCCc
Confidence 111 22577899999988888752 679888888776432 23688888887765443
No 101
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.56 E-value=8.3e-14 Score=144.45 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=127.7
Q ss_pred cccChHHHHHHhhhhhc----c-CCCC-eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 37 AIVGQEEMKLCLLLNVI----D-PKIG-GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~----~-~~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
+++|++.+++.+...+. . ...+ .++|+||||||||++++++++.+... +..+.........++.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~-------~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK-------FVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-------eEEEeCCCcccHHHHcCCC
Confidence 37899998887755321 1 1133 39999999999999999999998422 2111100000001111000
Q ss_pred hccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccch-hhhcCCCeEEEeCCCCCCHH----HHHHHHH
Q 017575 111 VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGL-LAKANRGILYVDEVNLLDDH----LVDVLLD 185 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~a~~~vl~lDE~~~l~~~----~~~~L~~ 185 (369)
. ...|.. ......+. .....+.|+||||++.+.+. ..+.|++
T Consensus 394 ----------------~--------~~~g~~---------~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~ 440 (775)
T TIGR00763 394 ----------------R--------TYVGAM---------PGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLE 440 (775)
T ss_pred ----------------C--------ceeCCC---------CchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHH
Confidence 0 000000 00000000 01123459999999888654 3478999
Q ss_pred HHhcCCce-eee--cceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 186 SAASGWNT-VER--EGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 186 ~l~~~~~~-~~~--~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
+|+..+.. +.. .+..+.. .++++|+|+|.. ..++++|++||.+ +.++.+ ..+....|+....
T Consensus 441 ~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~-~~i~~~L~~R~~v-i~~~~~-~~~e~~~I~~~~l----------- 505 (775)
T TIGR00763 441 VLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSI-DTIPRPLLDRMEV-IELSGY-TEEEKLEIAKKYL----------- 505 (775)
T ss_pred hcCHHhcCccccccCCceecc-CCEEEEEecCCc-hhCCHHHhCCeeE-EecCCC-CHHHHHHHHHHHH-----------
Confidence 98742111 100 0111211 367889999964 4599999999975 888888 4566667755320
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHH-HHHHcCCCCCchhHHHHHHHHH-HHH--H-cCC--------CCC
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISK-VCAELNVDGLRGDIVSNRAAKA-LAA--L-KGR--------DKV 329 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~s~R~~~~ll~~a~a-~A~--l-~~~--------~~v 329 (369)
..+.+....-...++.++++++.+|.. ++++.|. |.+.+.+..... .|. + .+. -.|
T Consensus 506 --------~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~---R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i 574 (775)
T TIGR00763 506 --------IPKALEDHGLKPDELKITDEALLLLIKYYTREAGV---RNLERQIEKICRKAAVKLVEQGEKKKSEAESVVI 574 (775)
T ss_pred --------HHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC---hHHHHHHHHHHHHHHHHHHhccCcccCCcccccC
Confidence 011111111112357899999998776 4455554 766554433221 121 2 122 256
Q ss_pred CHHHHHHHHhH
Q 017575 330 SAEDIATVMPN 340 (369)
Q Consensus 330 ~~~~i~~a~~~ 340 (369)
+.+++.+.+..
T Consensus 575 ~~~~~~~~lg~ 585 (775)
T TIGR00763 575 TPDNLKKYLGK 585 (775)
T ss_pred CHHHHHHhcCc
Confidence 77777776653
No 102
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1e-13 Score=139.21 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=134.7
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee-ecCCCCCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV-VVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~ 104 (369)
++++|. .|.+++||+.++..+.-++......| +||+||+|+|||++|+.++..+.-... ....+|. ...
T Consensus 10 ~KyRP~-~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~--------~C~ 80 (725)
T PRK07133 10 RKYRPK-TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ--------ECI 80 (725)
T ss_pred HHhCCC-CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh--------HHH
Confidence 444454 89999999999999888884333345 899999999999999999988742110 0000110 000
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
...+ ... .++.+... ...+.+ .. +.... ...| ..++..|++|||++.+....++.
T Consensus 81 ~~~~-----~~~-------Dvieidaasn~~vd~I------Re-Lie~~-~~~P---~~g~~KV~IIDEa~~LT~~A~NA 137 (725)
T PRK07133 81 ENVN-----NSL-------DIIEMDAASNNGVDEI------RE-LIENV-KNLP---TQSKYKIYIIDEVHMLSKSAFNA 137 (725)
T ss_pred Hhhc-----CCC-------cEEEEeccccCCHHHH------HH-HHHHH-Hhch---hcCCCEEEEEEChhhCCHHHHHH
Confidence 0000 000 00000000 000000 00 00000 0001 12456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++ .|..+.+|++++ .+..+.+++.+||.. +.+.+++. +.....+..
T Consensus 138 LLKtLEE-------------PP~~tifILaTt-e~~KLl~TI~SRcq~-ieF~~L~~-eeI~~~L~~------------- 188 (725)
T PRK07133 138 LLKTLEE-------------PPKHVIFILATT-EVHKIPLTILSRVQR-FNFRRISE-DEIVSRLEF------------- 188 (725)
T ss_pred HHHHhhc-------------CCCceEEEEEcC-ChhhhhHHHHhhcee-EEccCCCH-HHHHHHHHH-------------
Confidence 9999987 234555555554 234689999999975 88888854 333333221
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+.. ...+.++++++..|+..+.. +.|.+..++..+... . ...|+.+++.+++.
T Consensus 189 ------------il~----kegI~id~eAl~~LA~lS~G----slR~AlslLekl~~y---~-~~~It~e~V~ellg 241 (725)
T PRK07133 189 ------------ILE----KENISYEKNALKLIAKLSSG----SLRDALSIAEQVSIF---G-NNKITLKNVEELFG 241 (725)
T ss_pred ------------HHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh---c-cCCCCHHHHHHHHc
Confidence 111 11467888888888777752 678888877765433 2 34488888877654
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.3e-14 Score=139.69 Aligned_cols=233 Identities=16% Similarity=0.250 Sum_probs=139.1
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|.+++||+.++..+...+....-.| ++|+||+|+|||++|++++..+.........+|+.. .
T Consensus 7 ~~kyRP~-~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C--------~ 77 (563)
T PRK06647 7 ATKRRPR-DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC--------S 77 (563)
T ss_pred HHHhCCC-CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc--------h
Confidence 3444554 89999999999999988885333345 999999999999999999999852211101122110 0
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.... +..+..++ +..+... ...+.+. ..... ....+ ..++..+++|||++++....++.
T Consensus 78 ~C~~-i~~~~~~d-------v~~idgas~~~vddIr------~l~e~--~~~~p---~~~~~KVvIIDEa~~Ls~~a~na 138 (563)
T PRK06647 78 SCKS-IDNDNSLD-------VIEIDGASNTSVQDVR------QIKEE--IMFPP---ASSRYRVYIIDEVHMLSNSAFNA 138 (563)
T ss_pred HHHH-HHcCCCCC-------eEEecCcccCCHHHHH------HHHHH--HHhch---hcCCCEEEEEEChhhcCHHHHHH
Confidence 0000 00010000 0000000 0001110 00000 00011 12456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++ .|..+.+|++++. ...+.+++.+||.. +.+..++. +....++.
T Consensus 139 LLK~LEe-------------pp~~~vfI~~tte-~~kL~~tI~SRc~~-~~f~~l~~-~el~~~L~-------------- 188 (563)
T PRK06647 139 LLKTIEE-------------PPPYIVFIFATTE-VHKLPATIKSRCQH-FNFRLLSL-EKIYNMLK-------------- 188 (563)
T ss_pred HHHhhcc-------------CCCCEEEEEecCC-hHHhHHHHHHhceE-EEecCCCH-HHHHHHHH--------------
Confidence 9999986 2345556655542 34688999999985 88888744 33333322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
++.. ...+.++++++.+|+..+.. +.|.+.+++..+.+. .+ ..++.+++++++.
T Consensus 189 -----------~i~~----~egi~id~eAl~lLa~~s~G----dlR~alslLdklis~---~~-~~It~e~V~~llg 242 (563)
T PRK06647 189 -----------KVCL----EDQIKYEDEALKWIAYKSTG----SVRDAYTLFDQVVSF---SD-SDITLEQIRSKMG 242 (563)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHhh---cC-CCCCHHHHHHHhC
Confidence 1111 13578899999988877642 679888888765433 22 4588888887654
No 104
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-13 Score=136.47 Aligned_cols=221 Identities=21% Similarity=0.268 Sum_probs=141.1
Q ss_pred CCCCCccccChHHHHHHhhhhhc---cC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVI---DP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPED 98 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~---~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 98 (369)
+...|.++-|.+++++.|..-+- +| ..+++||+||||||||.|||++|+.. +.||..+..
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSG- 377 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSG- 377 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeech-
Confidence 33579999999998777754431 00 13349999999999999999999998 455533211
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---CCCeEEEeCCCCC
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVNLL 175 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~~~vl~lDE~~~l 175 (369)
++.. +.+.+........++..+ .|+++|+||++..
T Consensus 378 -----SEFv-------------------------------------E~~~g~~asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 378 -----SEFV-------------------------------------EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred -----HHHH-------------------------------------HHhcccchHHHHHHHHHhhccCCeEEEecccccc
Confidence 0000 001111111122333333 4889999999543
Q ss_pred CH------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 176 DD------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 176 ~~------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
.. +-.+.|.+++-+ + +|... ...+.+++++|-.+ .+++||++ ||+.++.++.| +..
T Consensus 416 ~~~r~G~~~~~~~~e~e~tlnQll~e----m--Dgf~~--~~~vi~~a~tnr~d-~ld~allrpGRfdr~i~i~~p-~~~ 485 (774)
T KOG0731|consen 416 GRKRGGKGTGGGQDEREQTLNQLLVE----M--DGFET--SKGVIVLAATNRPD-ILDPALLRPGRFDRQIQIDLP-DVK 485 (774)
T ss_pred cccccccccCCCChHHHHHHHHHHHH----h--cCCcC--CCcEEEEeccCCcc-ccCHHhcCCCccccceeccCC-chh
Confidence 22 233445554432 1 12222 25688899999544 59999998 99999999999 556
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE-LNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~s~R~~~~ll~~a~a~ 320 (369)
.+..|+... ++ .+.++.+...+-. ++.. -|+ +.-.+.+++-.|.-+
T Consensus 486 ~r~~i~~~h---------------------------~~----~~~~~~e~~dl~~-~a~~t~gf-~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 486 GRASILKVH---------------------------LR----KKKLDDEDVDLSK-LASLTPGF-SGADLANLCNEAALL 532 (774)
T ss_pred hhHHHHHHH---------------------------hh----ccCCCcchhhHHH-HHhcCCCC-cHHHHHhhhhHHHHH
Confidence 677775522 11 2344333333322 4443 245 567888999999999
Q ss_pred HHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 321 AALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 321 A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
|.-++...|+..|+..|+..+...
T Consensus 533 a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 533 AARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHHhccCccchhhHHHHHHHHhcc
Confidence 999999999999999999976654
No 105
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.55 E-value=1.6e-14 Score=121.82 Aligned_cols=135 Identities=27% Similarity=0.327 Sum_probs=88.5
Q ss_pred CeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHh
Q 017575 58 GGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDR 136 (369)
Q Consensus 58 g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (369)
.+|+|.|++||||+.+|++|........ .+...+| .....+....++++.
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc--~~~~~~~~e~~LFG~--------------------------- 73 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNC--AALPEELLESELFGH--------------------------- 73 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEET--TTS-HHHHHHHHHEB---------------------------
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEeh--hhhhcchhhhhhhcc---------------------------
Confidence 4499999999999999999999775321 2211222 222223333333331
Q ss_pred hhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC
Q 017575 137 VCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE 216 (369)
Q Consensus 137 ~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~ 216 (369)
..- . -.+......|.+..|++|+|||||++.|++..|..|+++|+++.+... |.....+.++.+|++++..
T Consensus 74 ----~~~--~-~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 ----EKG--A-FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp ----CSS--S-STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEESS-
T ss_pred ----ccc--c-ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccc--cccccccccceEEeecCcC
Confidence 100 0 012223456999999999999999999999999999999998865433 4444566789999999954
Q ss_pred ------CCCCCHhHHhhhcc
Q 017575 217 ------EGELRPQLLDRFGM 230 (369)
Q Consensus 217 ------~~~l~~al~~R~~~ 230 (369)
.+.+.+.|+.|+..
T Consensus 145 l~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 145 LEELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp HHHHHHTTSS-HHHHHHHTT
T ss_pred HHHHHHcCCChHHHHHHhce
Confidence 24588999999875
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.8e-13 Score=133.99 Aligned_cols=233 Identities=20% Similarity=0.307 Sum_probs=136.8
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
+..+|. .|.+++||+.++..+..++....-.| ++|+||+|+||||+|+.++..+.......+.+|+.. ..
T Consensus 8 ~kyRP~-~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c--------~n 78 (486)
T PRK14953 8 RKYRPK-FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC--------EN 78 (486)
T ss_pred HhhCCC-cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc--------HH
Confidence 344454 89999999999999988884323335 789999999999999999998842110001122110 00
Q ss_pred hhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL 183 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L 183 (369)
+. .+..+.. ..++.+.. ....+.+ ..+.... ...+ ..++..|++|||++.+....++.|
T Consensus 79 c~-~i~~g~~-------~d~~eidaas~~gvd~i-------r~I~~~~-~~~P---~~~~~KVvIIDEad~Lt~~a~naL 139 (486)
T PRK14953 79 CV-EIDKGSF-------PDLIEIDAASNRGIDDI-------RALRDAV-SYTP---IKGKYKVYIIDEAHMLTKEAFNAL 139 (486)
T ss_pred HH-HHhcCCC-------CcEEEEeCccCCCHHHH-------HHHHHHH-HhCc---ccCCeeEEEEEChhhcCHHHHHHH
Confidence 00 0000000 00000100 0000000 0000000 0111 124567999999999999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
+..|++ .+.+..+|.+++. ...+.+++.+||.. +.+.+++ .+....++...
T Consensus 140 Lk~LEe-------------pp~~~v~Il~tt~-~~kl~~tI~SRc~~-i~f~~ls-~~el~~~L~~i------------- 190 (486)
T PRK14953 140 LKTLEE-------------PPPRTIFILCTTE-YDKIPPTILSRCQR-FIFSKPT-KEQIKEYLKRI------------- 190 (486)
T ss_pred HHHHhc-------------CCCCeEEEEEECC-HHHHHHHHHHhceE-EEcCCCC-HHHHHHHHHHH-------------
Confidence 999986 1334444444442 23588899999975 8888774 44443443311
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 264 YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
.+ ...+.++++++.+|++.+.. +.|.+.+++..+... +...|+.+++.+++..
T Consensus 191 ------------~k----~egi~id~~al~~La~~s~G----~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg~ 243 (486)
T PRK14953 191 ------------CN----EEKIEYEEKALDLLAQASEG----GMRDAASLLDQASTY----GEGKVTIKVVEEFLGI 243 (486)
T ss_pred ------------HH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhCC
Confidence 11 22468899999988887642 679888888776533 3446888888886543
No 107
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.55 E-value=1.1e-13 Score=141.39 Aligned_cols=237 Identities=15% Similarity=0.103 Sum_probs=149.2
Q ss_pred CCCCccccChHHHHHHhhhhhccC-C-CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCC---CCCCCCcchhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDP-K-IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPY---NSDPEDPEAMGIEV 106 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~-~-~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 106 (369)
...|..++|.......+.-.+... . ...|+|.|++||||+++|++|....... ..+| ++.......+.+++
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~----~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA----AGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc----CCCeEEEECCCCChHHHHHHh
Confidence 446889999876644433222110 2 2239999999999999999999876422 1222 12111222223333
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
++. . .++...-..|.+..+++++|||||++.+++..|..|+.+
T Consensus 397 fg~-------------------------------~------~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~ 439 (638)
T PRK11388 397 LGS-------------------------------D------RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQV 439 (638)
T ss_pred cCC-------------------------------C------CcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHH
Confidence 321 1 011112235677778999999999999999999999999
Q ss_pred HhcCCceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHH
Q 017575 187 AASGWNTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEF 260 (369)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~ 260 (369)
++++.++-. |.....+.++.+|+|+|.. .+.+.+.|..|+.. +.+.-|+.++...+|...-
T Consensus 440 l~~~~~~~~--~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~~Di~~L~---------- 506 (638)
T PRK11388 440 LKTGVITRL--DSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRREDIPALV---------- 506 (638)
T ss_pred HhcCcEEeC--CCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhhhHHHHHH----------
Confidence 998765432 4444556678999998853 24578889999865 5544454555545553321
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 261 RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
..+..++.. .....+.++++++..|..+....++ |.+.++++.+... .....|+.+|+...+
T Consensus 507 --------~~~l~~~~~--~~~~~~~~s~~a~~~L~~y~WPGNv---reL~~~l~~~~~~---~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 507 --------NNKLRSLEK--RFSTRLKIDDDALARLVSYRWPGND---FELRSVIENLALS---SDNGRIRLSDLPEHL 568 (638)
T ss_pred --------HHHHHHHHH--HhCCCCCcCHHHHHHHHcCCCCChH---HHHHHHHHHHHHh---CCCCeecHHHCchhh
Confidence 112222221 1222467999999999988875554 8888888765543 344578888876554
No 108
>CHL00181 cbbX CbbX; Provisional
Probab=99.54 E-value=7.6e-14 Score=127.95 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=78.8
Q ss_pred chhhhcCCCeEEEeCCCCC---------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC----CCCCHh
Q 017575 157 GLLAKANRGILYVDEVNLL---------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE----GELRPQ 223 (369)
Q Consensus 157 g~~~~a~~~vl~lDE~~~l---------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~----~~l~~a 223 (369)
+.+.++.++|+||||++.+ ..+.++.|++.|++. ..++.+|+++++.. ..+.++
T Consensus 116 ~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-------------~~~~~vI~ag~~~~~~~~~~~np~ 182 (287)
T CHL00181 116 EVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-------------RDDLVVIFAGYKDRMDKFYESNPG 182 (287)
T ss_pred HHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-------------CCCEEEEEeCCcHHHHHHHhcCHH
Confidence 3455567899999999775 567889999999863 13567777776432 124689
Q ss_pred HHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcC
Q 017575 224 LLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELN 303 (369)
Q Consensus 224 l~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 303 (369)
|.+||...+.++++ +.++...|+... +.+ ....++++....+.++..+.+
T Consensus 183 L~sR~~~~i~F~~~-t~~el~~I~~~~------------------------l~~-----~~~~l~~~~~~~L~~~i~~~~ 232 (287)
T CHL00181 183 LSSRIANHVDFPDY-TPEELLQIAKIM------------------------LEE-----QQYQLTPEAEKALLDYIKKRM 232 (287)
T ss_pred HHHhCCceEEcCCc-CHHHHHHHHHHH------------------------HHH-----hcCCCChhHHHHHHHHHHHhC
Confidence 99999998999888 455565664421 111 135677777777776655422
Q ss_pred ----CCCCchhHHHHHHHH
Q 017575 304 ----VDGLRGDIVSNRAAK 318 (369)
Q Consensus 304 ----~~s~R~~~~ll~~a~ 318 (369)
.+..|.+.+++..+.
T Consensus 233 ~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 233 EQPLFANARSVRNALDRAR 251 (287)
T ss_pred CCCCCccHHHHHHHHHHHH
Confidence 223577777776553
No 109
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.53 E-value=1.5e-13 Score=121.11 Aligned_cols=136 Identities=25% Similarity=0.325 Sum_probs=102.4
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCC------------CCCCCCHhHHhhhcc
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNP------------EEGELRPQLLDRFGM 230 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~------------~~~~l~~al~~R~~~ 230 (369)
-|+|+|+||+|++|-+.+..|.+.++.- ....+|+++|. .+..+++.|+||+.+
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kalES~--------------iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~I 361 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKALESP--------------IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI 361 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHhcCC--------------CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeE
Confidence 4899999999999999999999999862 22233444442 234589999999976
Q ss_pred ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchh
Q 017575 231 HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGD 310 (369)
Q Consensus 231 ~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~ 310 (369)
|..-.. +.+....|+.+| .....+.++++++..+..+.... |.|.+
T Consensus 362 -irt~~y-~~~e~r~Ii~~R-----------------------------a~~E~l~~~e~a~~~l~~~gt~t---sLRy~ 407 (456)
T KOG1942|consen 362 -IRTLPY-DEEEIRQIIKIR-----------------------------AQVEGLQVEEEALDLLAEIGTST---SLRYA 407 (456)
T ss_pred -EeeccC-CHHHHHHHHHHH-----------------------------HhhhcceecHHHHHHHHhhccch---hHHHH
Confidence 444333 345555565533 33446889999999888876543 66999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 311 IVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 311 ~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
+.++.-|..+|..+|++.|..+|++++-.+.+..+-
T Consensus 408 vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~ 443 (456)
T KOG1942|consen 408 VQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKR 443 (456)
T ss_pred HHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchh
Confidence 999999999999999999999999999887766543
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.53 E-value=2.6e-13 Score=138.09 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=133.2
Q ss_pred hhhcCCCCCCCccccChHHHHH---HhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch
Q 017575 25 SKESQRPVYPFTAIVGQEEMKL---CLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA 101 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~---~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 101 (369)
+.+..+| ..|++++||+.++. .+.-.+......+++|+|||||||||+|++++.... .++... ++..
T Consensus 18 Laek~RP-~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~-------~~f~~l--na~~ 87 (725)
T PRK13341 18 LADRLRP-RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR-------AHFSSL--NAVL 87 (725)
T ss_pred hHHhcCC-CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc-------Ccceee--hhhh
Confidence 3344444 47999999998763 343333211233599999999999999999998763 111110 0000
Q ss_pred hhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 102 MGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
..+ .. ....+....... -...+..++||||+++++...++
T Consensus 88 --~~i----------------------------~d------ir~~i~~a~~~l----~~~~~~~IL~IDEIh~Ln~~qQd 127 (725)
T PRK13341 88 --AGV----------------------------KD------LRAEVDRAKERL----ERHGKRTILFIDEVHRFNKAQQD 127 (725)
T ss_pred --hhh----------------------------HH------HHHHHHHHHHHh----hhcCCceEEEEeChhhCCHHHHH
Confidence 000 00 000000000000 00123569999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCC-CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPE-EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEF 260 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~-~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~ 260 (369)
.|+..++++ .+.+|+++++. ...+.+++.+|+.+ +.+++++ .+....++....
T Consensus 128 aLL~~lE~g---------------~IiLI~aTTenp~~~l~~aL~SR~~v-~~l~pLs-~edi~~IL~~~l--------- 181 (725)
T PRK13341 128 ALLPWVENG---------------TITLIGATTENPYFEVNKALVSRSRL-FRLKSLS-DEDLHQLLKRAL--------- 181 (725)
T ss_pred HHHHHhcCc---------------eEEEEEecCCChHhhhhhHhhccccc-eecCCCC-HHHHHHHHHHHH---------
Confidence 999988763 23455554432 23588999999875 8888885 455555544221
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCC--CCCHHHHHHHH
Q 017575 261 RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRD--KVSAEDIATVM 338 (369)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~--~v~~~~i~~a~ 338 (369)
... ........+.++++++..|...+. | +.|.+.+++..+...+...+.. .|+.+++++++
T Consensus 182 ------------~~~-~~~~g~~~v~I~deaL~~La~~s~--G--D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 182 ------------QDK-ERGYGDRKVDLEPEAEKHLVDVAN--G--DARSLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred ------------HHH-HhhcCCcccCCCHHHHHHHHHhCC--C--CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 000 001112358899999999998773 2 5699999998876444322222 37788888877
Q ss_pred hH
Q 017575 339 PN 340 (369)
Q Consensus 339 ~~ 340 (369)
..
T Consensus 245 ~~ 246 (725)
T PRK13341 245 QQ 246 (725)
T ss_pred HH
Confidence 65
No 111
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.52 E-value=1.4e-13 Score=146.80 Aligned_cols=163 Identities=9% Similarity=0.095 Sum_probs=103.2
Q ss_pred CCCeEEEeCCCCCCHH-----HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeec
Q 017575 163 NRGILYVDEVNLLDDH-----LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~-----~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~ 235 (369)
.|+|++|||++.+... ....|+..|+... .......+.||||||. +..+|+||++ ||+..|.++
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAATNR-PD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIASTHI-PQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeCCC-cccCCHhHcCCCCCCeEEEeC
Confidence 5999999999877654 2455666665310 0112346889999995 4469999998 999999998
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-cCCCCCchhHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE-LNVDGLRGDIVSN 314 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~s~R~~~~ll 314 (369)
.|.. ..+.+++..- .. .+.+.+..+.. .+..+++. .|. |.+.+..++
T Consensus 1803 ~Pd~-p~R~kiL~IL-------------------------l~----tkg~~L~~~~v-dl~~LA~~T~Gf-SGADLanLv 1850 (2281)
T CHL00206 1803 RLLI-PQQRKHFFTL-------------------------SY----TRGFHLEKKMF-HTNGFGSITMGS-NARDLVALT 1850 (2281)
T ss_pred CCCc-hhHHHHHHHH-------------------------Hh----hcCCCCCcccc-cHHHHHHhCCCC-CHHHHHHHH
Confidence 8854 3343433210 00 01122222111 12233333 355 789999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHhHHhcc---cccCCCCCCCChhHHHHHHHHh
Q 017575 315 RAAKALAALKGRDKVSAEDIATVMPNCLRH---RLRKDPLESIDSGLLIIEKFYE 366 (369)
Q Consensus 315 ~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~---r~~~~~~~~~~~~~~~~~~~~~ 366 (369)
.-|..+|..++++.|+..+++.|+..+... ++....+.++...++=+++++.
T Consensus 1851 NEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yEiGhAvvq~ 1905 (2281)
T CHL00206 1851 NEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQN 1905 (2281)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhHHhHHHHHH
Confidence 999999999999999999999999876554 2222223334445555555544
No 112
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4e-13 Score=129.21 Aligned_cols=244 Identities=16% Similarity=0.250 Sum_probs=138.0
Q ss_pred hhcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 26 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 26 ~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
.++.+|. .|++++||+.+++.+.-.+....-.| ++|.||+|+||||+|++++..+.-........+......++....
T Consensus 7 ~~k~RP~-~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 7 ARKYRPK-KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred HHhcCCC-cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH
Confidence 3444454 89999999999998888874322335 999999999999999999988842110000000000000000000
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.. +..+.... +..+... ...+.+.. +... ....+ ..++..++|+||++++....++.
T Consensus 86 ~c~~-~~~~~~~n-------~~~~~~~~~~~id~Ir~---l~~~-------~~~~p-~~~~~kvvIIdea~~l~~~~~~~ 146 (397)
T PRK14955 86 SCRD-FDAGTSLN-------ISEFDAASNNSVDDIRL---LREN-------VRYGP-QKGRYRVYIIDEVHMLSIAAFNA 146 (397)
T ss_pred HHHH-HhcCCCCC-------eEeecccccCCHHHHHH---HHHH-------Hhhch-hcCCeEEEEEeChhhCCHHHHHH
Confidence 0110 01111100 0000000 00111100 0000 11111 12455699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++ .+....+|++++. ...+.+++.+|+.+ +++.+++..+ ....+..
T Consensus 147 LLk~LEe-------------p~~~t~~Il~t~~-~~kl~~tl~sR~~~-v~f~~l~~~e-i~~~l~~------------- 197 (397)
T PRK14955 147 FLKTLEE-------------PPPHAIFIFATTE-LHKIPATIASRCQR-FNFKRIPLEE-IQQQLQG------------- 197 (397)
T ss_pred HHHHHhc-------------CCCCeEEEEEeCC-hHHhHHHHHHHHHH-hhcCCCCHHH-HHHHHHH-------------
Confidence 9999986 1234445555442 34688899999975 8888885333 3223221
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH-cCCCCCCHHHHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL-KGRDKVSAEDIATVM 338 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l-~~~~~v~~~~i~~a~ 338 (369)
+.+ ...+.+++++..+|...+.. +.|.+.+.+..+..++.- .+...|+.+++.+++
T Consensus 198 ------------~~~----~~g~~i~~~al~~l~~~s~g----~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 198 ------------ICE----AEGISVDADALQLIGRKAQG----SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred ------------HHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 111 22578999999999888852 678888887766655432 224578888887765
No 113
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.51 E-value=3.2e-13 Score=134.08 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=141.8
Q ss_pred CCCCCccccChHHHHHHhhhhhcc-CCCC-eeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVID-PKIG-GVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~-~~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
....|+.++|.......+...+.. ...+ .++|.|++||||+++|+++........ .+.. +++.........++++
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~--inca~~~~~~~e~elF 276 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLA--LNCASIPDDVVESELF 276 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEE--eccccCCHHHHHHHhc
Confidence 456899999987654433222210 0223 399999999999999999987664221 1111 1221111222222222
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
+. .. .++. +......|.+..++++++||||++.+++..|..|+.++
T Consensus 277 G~-------------------------------~~--~~~~-~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l 322 (520)
T PRK10820 277 GH-------------------------------AP--GAYP-NALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 322 (520)
T ss_pred CC-------------------------------CC--CCcC-CcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHH
Confidence 21 00 0000 11122467787889999999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEF 260 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~ 260 (369)
+++.+.- .|.....+.++.+|++++... +.+.+.|..|+.. .+.+|+. ++...+|...-
T Consensus 323 ~~~~~~~--~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpL--reR~~Di~~L~---------- 388 (520)
T PRK10820 323 NDGTFRR--VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPL--RDRPQDIMPLT---------- 388 (520)
T ss_pred hcCCccc--CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCc--ccChhHHHHHH----------
Confidence 9876432 244444456788888877432 4478889999764 4555554 44444443211
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 261 RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
..+..++.. +.......++++++..|..+....++ |.+.+++..|... .....|+.+|+.
T Consensus 389 --------~~fl~~~~~-~~g~~~~~ls~~a~~~L~~y~WPGNv---reL~nvl~~a~~~---~~~~~i~~~~~~ 448 (520)
T PRK10820 389 --------ELFVARFAD-EQGVPRPKLAADLNTVLTRYGWPGNV---RQLKNAIYRALTQ---LEGYELRPQDIL 448 (520)
T ss_pred --------HHHHHHHHH-HcCCCCCCcCHHHHHHHhcCCCCCHH---HHHHHHHHHHHHh---CCCCcccHHHcC
Confidence 111122222 11122457999999988877765444 7777777665443 344568888863
No 114
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.50 E-value=3.9e-13 Score=138.17 Aligned_cols=224 Identities=21% Similarity=0.142 Sum_probs=137.4
Q ss_pred CCCccccChHHHHHHhhhhhccC-CCC-eeEEecCCCCChhHHHHHHHhccCcceeecCCCC---CCCCCCcchhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDP-KIG-GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPY---NSDPEDPEAMGIEVR 107 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~-~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~ 107 (369)
..|..++|+......+...+... ..+ +|+|+|++|||||++|++|....... +.++ ++.......+.++++
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~----~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN----NRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----CCCeEEEecccCChhHhhhhhc
Confidence 46788999887655543222110 223 49999999999999999999877422 1222 111111222222222
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
+. .. ..+ .|......|.+..++++++||||++.+++..|..|+.+|
T Consensus 449 g~-------------------------------~~--~~~-~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l 494 (686)
T PRK15429 449 GH-------------------------------ER--GAF-TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 494 (686)
T ss_pred Cc-------------------------------cc--ccc-cccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHH
Confidence 21 00 000 111112356677789999999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
+++.+.-. |.....+.++.+|++++... +.+.+.|..|+.. +.+.-|+.++...+|...-
T Consensus 495 ~~~~~~~~--g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~L~----------- 560 (686)
T PRK15429 495 QEQEFERL--GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERPEDIPLLV----------- 560 (686)
T ss_pred HhCCEEeC--CCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhHhHHHHHH-----------
Confidence 98765432 44444556889999998542 3477889999865 4444454555555563321
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCC-cccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPA-VQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
..+..++.. ..... ..+++++++.|..+....|+ |.+.+++..|...
T Consensus 561 -------~~~l~~~~~--~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~~i~~a~~~ 608 (686)
T PRK15429 561 -------KAFTFKIAR--RMGRNIDSIPAETLRTLSNMEWPGNV---RELENVIERAVLL 608 (686)
T ss_pred -------HHHHHHHHH--HcCCCCCCcCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHh
Confidence 111112211 12233 35899999999888775554 8888877776543
No 115
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.50 E-value=7.7e-13 Score=137.67 Aligned_cols=228 Identities=19% Similarity=0.229 Sum_probs=131.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|++..++.+...+......+++|+||||||||++++.++..+..... ...+.. ...+.-++.. +..+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v--~~~l~~----~~i~~l~l~~-l~ag 257 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDV--PPALRN----VRLLSLDLGL-LQAG 257 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCC--CccccC----CeEEEeehhh-hhcc
Confidence 57789999998888776553223334999999999999999999998742210 000000 0000000000 0000
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH--------HHHHHHHH
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD--------HLVDVLLD 185 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~--------~~~~~L~~ 185 (369)
.. ..+..+..+-..++ . . .....+.|+||||++.+-. +.-+.|..
T Consensus 258 ~~-------------~~ge~e~~lk~ii~------e----~----~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp 310 (852)
T TIGR03345 258 AS-------------VKGEFENRLKSVID------E----V----KASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP 310 (852)
T ss_pred cc-------------cchHHHHHHHHHHH------H----H----HhcCCCeEEEEeChHHhccCCCccccccHHHHhhH
Confidence 00 00000011110100 0 0 0001357999999977642 12234555
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.|+.| .+.+|+|+++..+ ..++||.+||.. |.+++|+ .+....|+..
T Consensus 311 ~l~~G---------------~l~~IgaTT~~e~~~~~~~d~AL~rRf~~-i~v~eps-~~~~~~iL~~------------ 361 (852)
T TIGR03345 311 ALARG---------------ELRTIAATTWAEYKKYFEKDPALTRRFQV-VKVEEPD-EETAIRMLRG------------ 361 (852)
T ss_pred HhhCC---------------CeEEEEecCHHHHhhhhhccHHHHHhCeE-EEeCCCC-HHHHHHHHHH------------
Confidence 66543 5668899987543 379999999985 9999995 5656566541
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHcCCC-CCCHHHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALKGRD-KVSAEDIATV 337 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~~~~-~v~~~~i~~a 337 (369)
+.........+.++++++..+..++.++-.. =+..++++++-|.+...+.... .+..+++...
T Consensus 362 -------------~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 362 -------------LAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred -------------HHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 2222222346889999999999988765321 3567899999988877775332 3344444433
No 116
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.50 E-value=3.9e-13 Score=123.29 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=81.1
Q ss_pred chhhhcCCCeEEEeCCCCC---------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC----CCCCHh
Q 017575 157 GLLAKANRGILYVDEVNLL---------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE----GELRPQ 223 (369)
Q Consensus 157 g~~~~a~~~vl~lDE~~~l---------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~----~~l~~a 223 (369)
+.+.++.+++|||||++.+ +.+.++.|++.|+++. ..+.+|+++++.. ..+.++
T Consensus 115 ~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~ 181 (284)
T TIGR02880 115 EILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPG 181 (284)
T ss_pred HHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHH
Confidence 4455677899999999866 4667899999998632 3567788876432 125799
Q ss_pred HHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcC
Q 017575 224 LLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELN 303 (369)
Q Consensus 224 l~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 303 (369)
|.+||...+.+++++ .+....|+... +.+ . ...+++++...+..+....+
T Consensus 182 L~sR~~~~i~fp~l~-~edl~~I~~~~------------------------l~~-~----~~~l~~~a~~~L~~~l~~~~ 231 (284)
T TIGR02880 182 FSSRVAHHVDFPDYS-EAELLVIAGLM------------------------LKE-Q----QYRFSAEAEEAFADYIALRR 231 (284)
T ss_pred HHhhCCcEEEeCCcC-HHHHHHHHHHH------------------------HHH-h----ccccCHHHHHHHHHHHHHhC
Confidence 999999889999985 55555554421 111 1 24677888887777654221
Q ss_pred ----CCCCchhHHHHHHHHHH
Q 017575 304 ----VDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 304 ----~~s~R~~~~ll~~a~a~ 320 (369)
.+..|.+.+++..+...
T Consensus 232 ~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 232 TQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CCCCCChHHHHHHHHHHHHHH
Confidence 22468888877766433
No 117
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=2.7e-13 Score=139.91 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=128.3
Q ss_pred cccChHHHHHHhhhhhcc-------C--CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCc--c-hhhh
Q 017575 37 AIVGQEEMKLCLLLNVID-------P--KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDP--E-AMGI 104 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~-------~--~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~--~-~~~~ 104 (369)
.++||+.+++.+..++.. + ..|.++|+||+|||||++|++++..+. .++....... + ....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-------~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-------VHLERFDMSEYMEKHTVS 527 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-------CCeEEEeCchhhhcccHH
Confidence 478999998888776641 1 123489999999999999999999883 1111110000 0 0000
Q ss_pred hhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
.+.+. + .|..+.. .++. + ...+.....+|++|||++++++++++.|+
T Consensus 528 ~lig~-------------------~--------~gyvg~~---~~~~--l-~~~~~~~p~~VvllDEieka~~~~~~~Ll 574 (731)
T TIGR02639 528 RLIGA-------------------P--------PGYVGFE---QGGL--L-TEAVRKHPHCVLLLDEIEKAHPDIYNILL 574 (731)
T ss_pred HHhcC-------------------C--------CCCcccc---hhhH--H-HHHHHhCCCeEEEEechhhcCHHHHHHHH
Confidence 01000 0 0000000 0000 0 01111224579999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCC------------------------CCCCHhHHhhhccceeecCCCCH
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEE------------------------GELRPQLLDRFGMHAQVGTVRDA 240 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------------------------~~l~~al~~R~~~~i~~~~~~~~ 240 (369)
++|+++.++-. .|..+.. .+..+|+|+|... ..+.++|++||+..+.+.+. +.
T Consensus 575 ~~ld~g~~~d~-~g~~vd~-~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pL-s~ 651 (731)
T TIGR02639 575 QVMDYATLTDN-NGRKADF-RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPL-SE 651 (731)
T ss_pred HhhccCeeecC-CCcccCC-CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCC-CH
Confidence 99999877642 2444433 3677888888531 12678999999976777777 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
+...+|+... +.+.........-.+.+++++.++|......... ++|.+.+++..
T Consensus 652 e~l~~Iv~~~--------------------L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~-GaR~l~r~i~~ 706 (731)
T TIGR02639 652 EVLEKIVQKF--------------------VDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEF-GARPLARVIQE 706 (731)
T ss_pred HHHHHHHHHH--------------------HHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCccc-CchHHHHHHHH
Confidence 6677776632 1111112222233588999999999886533333 45766655543
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=1.4e-12 Score=122.11 Aligned_cols=215 Identities=20% Similarity=0.177 Sum_probs=130.3
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhh
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
+++| ..|++++|++.+++.+...+......+++|+||+|+|||+++++++..+..... .......+...
T Consensus 10 kyrP-~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~----~~~~i~~~~~~------ 78 (319)
T PRK00440 10 KYRP-RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW----RENFLELNASD------ 78 (319)
T ss_pred hhCC-CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----ccceEEecccc------
Confidence 3445 489999999999998888874222234999999999999999999988742210 00000000000
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
......+. ..+..-.. ..+...+...++++||++.+....++.|+..+
T Consensus 79 -----------------------~~~~~~~~------~~i~~~~~---~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~l 126 (319)
T PRK00440 79 -----------------------ERGIDVIR------NKIKEFAR---TAPVGGAPFKIIFLDEADNLTSDAQQALRRTM 126 (319)
T ss_pred -----------------------ccchHHHH------HHHHHHHh---cCCCCCCCceEEEEeCcccCCHHHHHHHHHHH
Confidence 00000000 00000000 00111134569999999999999999999998
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAE 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 267 (369)
+.. +....+|+++|.. ..+.+++.+|+.+ +++.+++. +....++...
T Consensus 127 e~~-------------~~~~~lIl~~~~~-~~l~~~l~sr~~~-~~~~~l~~-~ei~~~l~~~----------------- 173 (319)
T PRK00440 127 EMY-------------SQNTRFILSCNYS-SKIIDPIQSRCAV-FRFSPLKK-EAVAERLRYI----------------- 173 (319)
T ss_pred hcC-------------CCCCeEEEEeCCc-cccchhHHHHhhe-eeeCCCCH-HHHHHHHHHH-----------------
Confidence 752 1233455566632 3577889999976 88888853 3333443311
Q ss_pred HHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 268 QAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.. ...+.++++++.+|...+. . +.|.+.+.++.+... ...|+.++|..++.
T Consensus 174 --------~~----~~~~~i~~~al~~l~~~~~---g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 174 --------AE----NEGIEITDDALEAIYYVSE---G-DMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred --------HH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 11 2256789999998877653 2 678888888754432 35688888887754
No 119
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=8.3e-13 Score=124.26 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=106.8
Q ss_pred CCCeEEEeCCCCCC------------HHHHHHHHHHHhcCCceeeecceeeeec-CceEEEeecC---CCCCCCCHhHHh
Q 017575 163 NRGILYVDEVNLLD------------DHLVDVLLDSAASGWNTVEREGISISHP-ARFILIGSGN---PEEGELRPQLLD 226 (369)
Q Consensus 163 ~~~vl~lDE~~~l~------------~~~~~~L~~~l~~~~~~~~~~~~~~~~~-~~~~li~t~n---~~~~~l~~al~~ 226 (369)
+.||+||||++++. ..+|..|+.+|+...+... . .+.+ .++.||++.- ..+..+-|.|.-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k--~--~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTK--Y--GMVKTDHILFIASGAFHVSKPSDLIPELQG 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeec--c--eeEECCceeEEecCCcCCCChhhccHHHhC
Confidence 78999999995543 2389999999997655542 1 2222 4677777643 112347799999
Q ss_pred hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-----
Q 017575 227 RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE----- 301 (369)
Q Consensus 227 R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~----- 301 (369)
||.+++.+.++ +.+...+||..- ....+.++........-.+.+++++++.|++.+.+
T Consensus 325 R~Pi~v~L~~L-~~~dL~~ILteP----------------~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 387 (443)
T PRK05201 325 RFPIRVELDAL-TEEDFVRILTEP----------------KASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKT 387 (443)
T ss_pred ccceEEECCCC-CHHHHHHHhcCC----------------hhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccc
Confidence 99999999999 677788887631 12233444444444455789999999999999987
Q ss_pred cCCCCCchhHHHHHHHHHHHHHcCCC------CCCHHHHHHHHhH
Q 017575 302 LNVDGLRGDIVSNRAAKALAALKGRD------KVSAEDIATVMPN 340 (369)
Q Consensus 302 ~~~~s~R~~~~ll~~a~a~A~l~~~~------~v~~~~i~~a~~~ 340 (369)
.++ ++|++..++...-.-+.+..-+ .|+.+.+...+..
T Consensus 388 ~~i-GAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~ 431 (443)
T PRK05201 388 ENI-GARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLGD 431 (443)
T ss_pred ccc-chhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHHH
Confidence 356 7899999888877666654332 3556666555443
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=8.5e-13 Score=132.75 Aligned_cols=233 Identities=17% Similarity=0.258 Sum_probs=134.3
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee-ecCCCCCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV-VVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~ 104 (369)
++.+|. .|++++||+.+++.+...+.....+| ++|+||+|+|||++++.++..+.-... ..+.+|+. | .
T Consensus 8 ~kyRP~-~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~----c----~ 78 (585)
T PRK14950 8 RKWRSQ-TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT----C----E 78 (585)
T ss_pred HHhCCC-CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc----C----H
Confidence 444554 89999999999999988774333345 799999999999999999988841100 00111111 1 0
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
....+..+...+ ++.+.. ....+.+- . +... ....+ ..++..|+||||++.+..+.++.
T Consensus 79 -~c~~i~~~~~~d-------~~~i~~~~~~~vd~ir------~-ii~~-~~~~p---~~~~~kVvIIDEa~~L~~~a~na 139 (585)
T PRK14950 79 -MCRAIAEGSAVD-------VIEMDAASHTSVDDAR------E-IIER-VQFRP---ALARYKVYIIDEVHMLSTAAFNA 139 (585)
T ss_pred -HHHHHhcCCCCe-------EEEEeccccCCHHHHH------H-HHHH-HhhCc---ccCCeEEEEEeChHhCCHHHHHH
Confidence 011111111000 000000 00011100 0 0000 00111 12456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++- +....+|++++. ...+.+.+.+||.. +.+..++. .....++.
T Consensus 140 LLk~LEep-------------p~~tv~Il~t~~-~~kll~tI~SR~~~-i~f~~l~~-~el~~~L~-------------- 189 (585)
T PRK14950 140 LLKTLEEP-------------PPHAIFILATTE-VHKVPATILSRCQR-FDFHRHSV-ADMAAHLR-------------- 189 (585)
T ss_pred HHHHHhcC-------------CCCeEEEEEeCC-hhhhhHHHHhccce-eeCCCCCH-HHHHHHHH--------------
Confidence 99999862 234444544442 23477889999975 88877743 33323322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
.+.. ...+.+++++..+|...+. . +.|.+.+.+..... + +...|+.+++++++..
T Consensus 190 -----------~~a~----~egl~i~~eal~~La~~s~---G-dlr~al~~LekL~~---y-~~~~It~e~V~~ll~~ 244 (585)
T PRK14950 190 -----------KIAA----AEGINLEPGALEAIARAAT---G-SMRDAENLLQQLAT---T-YGGEISLSQVQSLLGI 244 (585)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHH---h-cCCCCCHHHHHHHhcC
Confidence 1111 2246789998888877664 2 67888877775433 2 3456898888776543
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.48 E-value=2.1e-12 Score=121.98 Aligned_cols=236 Identities=17% Similarity=0.170 Sum_probs=127.0
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhc
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
..|++++|++.++..+...+..+...+++|+||||||||+++++++..+..... ..++ ...++.............
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~--~~~~--~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW--ENNF--TEFNVADFFDQGKKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc--ccce--EEechhhhhhcchhhhhc
Confidence 478999999999998888774322236999999999999999999988742210 0000 000110000000000000
Q ss_pred cccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 017575 113 GEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWN 192 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~ 192 (369)
...+ .. .+....... ... .+.............+ ..+++.+++|||++.++...++.|...|++.
T Consensus 88 ~~~~--~~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~---~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-- 152 (337)
T PRK12402 88 DPRF--AH----FLGTDKRIR-SSK---IDNFKHVLKEYASYRP---LSADYKTILLDNAEALREDAQQALRRIMEQY-- 152 (337)
T ss_pred Ccch--hh----hhhhhhhhc-cch---HHHHHHHHHHHHhcCC---CCCCCcEEEEeCcccCCHHHHHHHHHHHHhc--
Confidence 0000 00 000000000 000 0000000000000000 1134679999999999999999999998752
Q ss_pred eeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHH
Q 017575 193 TVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQ 272 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (369)
+....+|.+++. +..+.+++.+|+.. +.+.+++ .+....++..
T Consensus 153 -----------~~~~~~Il~~~~-~~~~~~~L~sr~~~-v~~~~~~-~~~~~~~l~~----------------------- 195 (337)
T PRK12402 153 -----------SRTCRFIIATRQ-PSKLIPPIRSRCLP-LFFRAPT-DDELVDVLES----------------------- 195 (337)
T ss_pred -----------cCCCeEEEEeCC-hhhCchhhcCCceE-EEecCCC-HHHHHHHHHH-----------------------
Confidence 122334444442 23477889999865 8888774 4444444331
Q ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 273 QQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 273 ~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+.. ...+.++++++..|...+. . +.|.+.+.+.. .+ .+...|+.+++.+++.
T Consensus 196 --~~~----~~~~~~~~~al~~l~~~~~---g-dlr~l~~~l~~---~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 196 --IAE----AEGVDYDDDGLELIAYYAG---G-DLRKAILTLQT---AA--LAAGEITMEAAYEALG 247 (337)
T ss_pred --HHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHH---HH--HcCCCCCHHHHHHHhC
Confidence 111 2246789999999888772 2 56777665543 22 2234799999988765
No 122
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=2.2e-12 Score=121.43 Aligned_cols=159 Identities=14% Similarity=0.245 Sum_probs=108.4
Q ss_pred cCCCeEEEeCCCCCCH------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecC---CCCCCCCHhHHh
Q 017575 162 ANRGILYVDEVNLLDD------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGN---PEEGELRPQLLD 226 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n---~~~~~l~~al~~ 226 (369)
++.||+||||++++.. .+|..|+.+|+...+... . ..+ ...++.||++.- ..+..+-|.|.-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k-~-~~v-~T~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTK-Y-GMV-KTDHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeec-c-eeE-ECCceeEEecCCcCCCChhhccHHHhC
Confidence 3789999999965432 289999999997655542 1 122 124677777643 123347899999
Q ss_pred hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-----
Q 017575 227 RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE----- 301 (369)
Q Consensus 227 R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~----- 301 (369)
||.+++.+.++ +.+...+||..- ....+.++........-.+.+++++++.|+..+.+
T Consensus 323 R~Pi~v~L~~L-~~edL~rILteP----------------~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 385 (441)
T TIGR00390 323 RFPIRVELQAL-TTDDFERILTEP----------------KNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKT 385 (441)
T ss_pred ccceEEECCCC-CHHHHHHHhcCC----------------hhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccc
Confidence 99999999999 677788887631 11233444444444455788999999999999986
Q ss_pred cCCCCCchhHHHHHHHHHHHHHcCCC------CCCHHHHHHHHhHH
Q 017575 302 LNVDGLRGDIVSNRAAKALAALKGRD------KVSAEDIATVMPNC 341 (369)
Q Consensus 302 ~~~~s~R~~~~ll~~a~a~A~l~~~~------~v~~~~i~~a~~~v 341 (369)
.++ ++|++..++...-.-+.+..-+ .|+.+.++..+.-+
T Consensus 386 ~~i-GAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 386 ENI-GARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLGAL 430 (441)
T ss_pred ccc-chhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHH
Confidence 356 6899999888877666665432 35666666555443
No 123
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=7.3e-13 Score=135.41 Aligned_cols=232 Identities=18% Similarity=0.211 Sum_probs=136.6
Q ss_pred CccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
++.++|++..++.+.-.+......+++|+||||||||++++.++..+.... .++... .+..+......
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~----vP~~l~--~~~~~~l~~~~------ 252 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD----VPEVMA--DCTIYSLDIGS------ 252 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcC----CCchhc--CCeEEeccHHH------
Confidence 557889988877776665422233499999999999999999997652111 111000 00000000000
Q ss_pred cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC---------CHHHHHHHHH
Q 017575 115 ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL---------DDHLVDVLLD 185 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l---------~~~~~~~L~~ 185 (369)
-+.|.. ....+....... ...+....+++|||||++.+ ..+..+.|..
T Consensus 253 ---------------------llaG~~-~~Ge~e~rl~~l-~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp 309 (758)
T PRK11034 253 ---------------------LLAGTK-YRGDFEKRFKAL-LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP 309 (758)
T ss_pred ---------------------Hhcccc-hhhhHHHHHHHH-HHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH
Confidence 000000 000000000000 01122345789999999755 1223344555
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.+.. ..+.+|+++|+.++ ..+++|.+||.. |.+++|+ .+....|+..
T Consensus 310 ~L~~---------------g~i~vIgATt~~E~~~~~~~D~AL~rRFq~-I~v~ePs-~~~~~~IL~~------------ 360 (758)
T PRK11034 310 LLSS---------------GKIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPS-IEETVQIING------------ 360 (758)
T ss_pred HHhC---------------CCeEEEecCChHHHHHHhhccHHHHhhCcE-EEeCCCC-HHHHHHHHHH------------
Confidence 5544 25678899997653 379999999985 9999994 5666677552
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHcC----CCCCCHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALKG----RDKVSAEDIA 335 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~~----~~~v~~~~i~ 335 (369)
+.........+.++++++..+.+++.++-.+ -+..++++++-|.+...+.. ...|+.+|+.
T Consensus 361 -------------~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~ 427 (758)
T PRK11034 361 -------------LKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIE 427 (758)
T ss_pred -------------HHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHH
Confidence 2223333457999999999999888764321 23488999998887665522 3458889998
Q ss_pred HHHhHHhc
Q 017575 336 TVMPNCLR 343 (369)
Q Consensus 336 ~a~~~vl~ 343 (369)
+++...-+
T Consensus 428 ~v~~~~tg 435 (758)
T PRK11034 428 SVVARIAR 435 (758)
T ss_pred HHHHHHhC
Confidence 88765433
No 124
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.1e-12 Score=114.08 Aligned_cols=223 Identities=18% Similarity=0.266 Sum_probs=135.4
Q ss_pred CCCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSD 95 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 95 (369)
.+|....++|-|-+..+..+..+++- ....++|++||||+|||.+||+.+..... .|-..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL 236 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL 236 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence 34555677887766555555444431 12334999999999999999999877631 01000
Q ss_pred CCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---CCCeEEEeCC
Q 017575 96 PEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEV 172 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~~~vl~lDE~ 172 (369)
. -+.+..+ +-+....+....++.+ .|.|+||||+
T Consensus 237 A------gPQLVQM-------------------------------------fIGdGAkLVRDAFaLAKEkaP~IIFIDEl 273 (424)
T KOG0652|consen 237 A------GPQLVQM-------------------------------------FIGDGAKLVRDAFALAKEKAPTIIFIDEL 273 (424)
T ss_pred c------chHHHhh-------------------------------------hhcchHHHHHHHHHHhhccCCeEEEEech
Confidence 0 0000000 0011111111122222 5889999999
Q ss_pred CC-----C------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCC
Q 017575 173 NL-----L------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRD 239 (369)
Q Consensus 173 ~~-----l------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~ 239 (369)
+. + |.++|..++++|++- -.++.+..+-+|+++|..+ -+++||++ |++..|++|.| .
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQL--------DGFss~~~vKviAATNRvD-iLDPALlRSGRLDRKIEfP~P-n 343 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQL--------DGFSSDDRVKVIAATNRVD-ILDPALLRSGRLDRKIEFPHP-N 343 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhh--------cCCCCccceEEEeeccccc-ccCHHHhhcccccccccCCCC-C
Confidence 43 2 346899999998751 1234456788999999654 48999987 79999999999 6
Q ss_pred HHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 240 AELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 240 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
.+.+.+|++...+ +..+++++ .+.++.....++. -....++--|.
T Consensus 344 e~aRarIlQIHsR-------------------------------KMnv~~DvNfeELaRsTddFNG---AQcKAVcVEAG 389 (424)
T KOG0652|consen 344 EEARARILQIHSR-------------------------------KMNVSDDVNFEELARSTDDFNG---AQCKAVCVEAG 389 (424)
T ss_pred hHHHHHHHHHhhh-------------------------------hcCCCCCCCHHHHhhcccccCc---hhheeeehhhh
Confidence 7778788763321 22333322 2223333322222 34445566677
Q ss_pred HHHHHcCCCCCCHHHHHHHHhHHhccc
Q 017575 319 ALAALKGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 319 a~A~l~~~~~v~~~~i~~a~~~vl~~r 345 (369)
-+|..++...|+.+|+-+++..|...+
T Consensus 390 MiALRr~atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 390 MIALRRGATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHhh
Confidence 888889999999999888887776543
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.3e-12 Score=127.01 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=135.7
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee-cCCCCCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV-VGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~ 104 (369)
+..+| ..|++++||+.++..+...+......| ++|+||+|+|||++|+.++..+...... ...+|+. | ...
T Consensus 9 ~kyRP-~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~----c-~~C- 81 (451)
T PRK06305 9 RKYRP-QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ----C-ASC- 81 (451)
T ss_pred HHhCC-CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc----c-HHH-
Confidence 44455 489999999999998888874322335 8999999999999999999888422100 0001110 0 000
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
..+..+.... +..+.. ....+.+. .+... ..+.+ ..++..|+|+||++.+....++.
T Consensus 82 ---~~i~~~~~~d-------~~~i~g~~~~gid~ir-------~i~~~-l~~~~---~~~~~kvvIIdead~lt~~~~n~ 140 (451)
T PRK06305 82 ---KEISSGTSLD-------VLEIDGASHRGIEDIR-------QINET-VLFTP---SKSRYKIYIIDEVHMLTKEAFNS 140 (451)
T ss_pred ---HHHhcCCCCc-------eEEeeccccCCHHHHH-------HHHHH-HHhhh---hcCCCEEEEEecHHhhCHHHHHH
Confidence 0000010000 000000 00001100 00000 00011 12456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .+....+|+++| ....+.+++.+||.. +.+.+++..+ ...++..
T Consensus 141 LLk~lEe-------------p~~~~~~Il~t~-~~~kl~~tI~sRc~~-v~f~~l~~~e-l~~~L~~------------- 191 (451)
T PRK06305 141 LLKTLEE-------------PPQHVKFFLATT-EIHKIPGTILSRCQK-MHLKRIPEET-IIDKLAL------------- 191 (451)
T ss_pred HHHHhhc-------------CCCCceEEEEeC-ChHhcchHHHHhceE-EeCCCCCHHH-HHHHHHH-------------
Confidence 9999986 123455555555 234688999999986 8888885433 3333221
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
+.+ ...+.++++++..|...+.. +.|.+.+.+..... +.+ ..|+.+++.+++..
T Consensus 192 ------------~~~----~eg~~i~~~al~~L~~~s~g----dlr~a~~~Lekl~~---~~~-~~It~~~V~~l~~~ 245 (451)
T PRK06305 192 ------------IAK----QEGIETSREALLPIARAAQG----SLRDAESLYDYVVG---LFP-KSLDPDSVAKALGL 245 (451)
T ss_pred ------------HHH----HcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHH---hcc-CCcCHHHHHHHHCC
Confidence 111 12567899999888887742 56888777765433 233 34888888776543
No 126
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-12 Score=111.85 Aligned_cols=138 Identities=14% Similarity=0.252 Sum_probs=90.9
Q ss_pred CCCeEEEeCCC-----------CCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVN-----------LLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~-----------~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
.|.|+||||++ ..|.++|..|+++|++ +. | .....++-+|.++|..+ .+++||++ |++
T Consensus 248 apsiifideidaiatkrfdaqtgadrevqril~ellnq----md--g--fdq~~nvkvimatnrad-tldpallrpgrld 318 (408)
T KOG0727|consen 248 APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ----MD--G--FDQTTNVKVIMATNRAD-TLDPALLRPGRLD 318 (408)
T ss_pred CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh----cc--C--cCcccceEEEEecCccc-ccCHhhcCCcccc
Confidence 57899999993 3566789999998875 11 2 23345788899999654 49999997 899
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHH-HHcCCCCCc
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVC-AELNVDGLR 308 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~s~R 308 (369)
.+|+++.|+ +-+...+.. -|. .+..+++++- |.++. +...+ |.-
T Consensus 319 rkiefplpd-rrqkrlvf~-------------------------tit------skm~ls~~vd--le~~v~rpdki-s~a 363 (408)
T KOG0727|consen 319 RKIEFPLPD-RRQKRLVFS-------------------------TIT------SKMNLSDEVD--LEDLVARPDKI-SGA 363 (408)
T ss_pred ccccCCCCc-hhhhhhhHH-------------------------hhh------hcccCCcccC--HHHHhcCcccc-chh
Confidence 999999884 433322211 111 1223333221 22222 22233 555
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 309 GDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 309 ~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.+..+++-|.-.|-...+..|...|++++...+...
T Consensus 364 di~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 364 DINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred hHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCC
Confidence 677888888888888889999999999998876543
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.46 E-value=1.3e-12 Score=124.32 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=101.8
Q ss_pred CccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
++++++.+...+.+...+. ..++++|.||||||||++|+.++..+..... ...+..+..++...-.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~--~~~v~~VtFHpsySYeDFI------- 242 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKA--PQRVNMVQFHQSYSYEDFI------- 242 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCcc--cceeeEEeecccccHHHHh-------
Confidence 5566677777777777774 4455999999999999999999988743210 0001111111111111110
Q ss_pred cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchh----hh-----cCCCeEEEeCCCCCCHH-HHHHHH
Q 017575 115 ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL----AK-----ANRGILYVDEVNLLDDH-LVDVLL 184 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~----~~-----a~~~vl~lDE~~~l~~~-~~~~L~ 184 (369)
+.... .+....+.+|.+ .. .++.++||||+|+.+.+ +...++
T Consensus 243 ------------------------~G~rP----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~ 294 (459)
T PRK11331 243 ------------------------QGYRP----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVM 294 (459)
T ss_pred ------------------------cccCC----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhh
Confidence 00000 001112223322 11 14689999999999965 588899
Q ss_pred HHHhcCC------cee--ee-cceeeeecCceEEEeecCCCCCC---CCHhHHhhhccceeecCCCCHHHH
Q 017575 185 DSAASGW------NTV--ER-EGISISHPARFILIGSGNPEEGE---LRPQLLDRFGMHAQVGTVRDAELR 243 (369)
Q Consensus 185 ~~l~~~~------~~~--~~-~~~~~~~~~~~~li~t~n~~~~~---l~~al~~R~~~~i~~~~~~~~~~~ 243 (369)
.+|+.+. +.+ .+ .+..+..|.++.+|+|+|..+.. ++.||+|||.. +.+.+..+.+..
T Consensus 295 ~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p~~~~~~~ 364 (459)
T PRK11331 295 MLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEPGFDTPQF 364 (459)
T ss_pred hhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecCCCChHHH
Confidence 9998542 111 11 12346788999999999976633 89999999987 888764343333
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.7e-12 Score=129.77 Aligned_cols=243 Identities=18% Similarity=0.273 Sum_probs=138.3
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCC-CCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDP-YNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~ 104 (369)
++.+|. .|.+++||+.++..+.-++....-.| ++|.||+|+||||+|++++..+.-.... +.+ +......++....
T Consensus 8 ~kyRP~-~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~-~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 8 RKYRPS-KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMI-DDPVYLQEVTEPCGECE 85 (620)
T ss_pred HHHCCC-CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcC-CccccccccCCCCccCH
Confidence 444454 89999999999998888874323345 9999999999999999999888421100 000 0000000000011
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+. .+..+.... +..+... ...+.+.. +.. ....++ ..++..|+||||++++....++.
T Consensus 86 sC~-~~~~g~~~n-------~~~~d~~s~~~vd~Ir~---l~e-------~~~~~P-~~~~~KVvIIdEad~Lt~~a~na 146 (620)
T PRK14954 86 SCR-DFDAGTSLN-------ISEFDAASNNSVDDIRQ---LRE-------NVRYGP-QKGRYRVYIIDEVHMLSTAAFNA 146 (620)
T ss_pred HHH-HHhccCCCC-------eEEecccccCCHHHHHH---HHH-------HHHhhh-hcCCCEEEEEeChhhcCHHHHHH
Confidence 111 111111110 0001000 00111110 000 111112 22456799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|++.|++ .+....+|++++ ....+.+++.+|+.+ +.+.+++. +.....+.
T Consensus 147 LLK~LEe-------------Pp~~tv~IL~t~-~~~kLl~TI~SRc~~-vef~~l~~-~ei~~~L~-------------- 196 (620)
T PRK14954 147 FLKTLEE-------------PPPHAIFIFATT-ELHKIPATIASRCQR-FNFKRIPL-DEIQSQLQ-------------- 196 (620)
T ss_pred HHHHHhC-------------CCCCeEEEEEeC-ChhhhhHHHHhhceE-EecCCCCH-HHHHHHHH--------------
Confidence 9999987 233444554444 235688999999976 99988854 33323322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH-cCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL-KGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l-~~~~~v~~~~i~~a~~ 339 (369)
++.. ...+.++++++++|...+.. +.|.+.+.+....+++.- .+...|+.+++.+++.
T Consensus 197 -----------~i~~----~egi~I~~eal~~La~~s~G----dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 197 -----------MICR----AEGIQIDADALQLIARKAQG----SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 1111 12567999999998888852 678888877754433311 1245688888877653
No 129
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.3e-12 Score=117.49 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=97.5
Q ss_pred CCeEEEeCCC---------CCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceee
Q 017575 164 RGILYVDEVN---------LLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQV 234 (369)
Q Consensus 164 ~~vl~lDE~~---------~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~ 234 (369)
+-++||||.+ .++....+.|..+|= .+-....+|+++.++|. ++.++.|+.|||+-.+++
T Consensus 444 GLllFIDEADAFLceRnktymSEaqRsaLNAlLf----------RTGdqSrdivLvlAtNr-pgdlDsAV~DRide~veF 512 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLF----------RTGDQSRDIVLVLATNR-PGDLDSAVNDRIDEVVEF 512 (630)
T ss_pred ceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH----------HhcccccceEEEeccCC-ccchhHHHHhhhhheeec
Confidence 4488999993 345556666666552 12235568999999994 567999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhh--c-cCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCH-HHHHHHHHHHHHc-CCCCCch
Q 017575 235 GTVRDAELRVKIVEERAR--F-DKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDH-DLKVKISKVCAEL-NVDGLRG 309 (369)
Q Consensus 235 ~~~~~~~~~~~il~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~~l~~~~~~~-~~~s~R~ 309 (369)
+.| ..+.+.+++..... . ..+.+ ..+ .....+.+. .-..+.+.. .....+.+.+++. |+ |.|.
T Consensus 513 pLP-GeEERfkll~lYlnkyi~~~~~~-------~~~-~~~~~lfkk--~sQ~i~l~~~~t~~~~~EaAkkTeGf-SGRE 580 (630)
T KOG0742|consen 513 PLP-GEEERFKLLNLYLNKYILKPATS-------GKP-GKWSHLFKK--ESQRIKLAGFDTGRKCSEAAKKTEGF-SGRE 580 (630)
T ss_pred CCC-ChHHHHHHHHHHHHHHhcCcCCC-------CCC-chhhHHHhh--hhheeeeccchHHHHHHHHHHhccCC-cHHH
Confidence 988 56677777775321 0 00000 000 001111110 011355555 3444566666654 66 8899
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 310 DIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 310 ~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
+..|+.-..+.+|.+..-.++..-+++.+.+.
T Consensus 581 iakLva~vQAavYgsedcvLd~~lf~e~v~yk 612 (630)
T KOG0742|consen 581 IAKLVASVQAAVYGSEDCVLDEALFDERVDYK 612 (630)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 99988888888887766677777788877763
No 130
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.7e-13 Score=127.01 Aligned_cols=155 Identities=24% Similarity=0.363 Sum_probs=101.3
Q ss_pred CCCCCccccChHHHHHHhhhhhccC-------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDP-------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~-------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
|..++.+|-+.+++...+..+++.| ..+++||+||||||||.|||++|...+ .+|..+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag-------~NFisVK- 577 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG-------ANFISVK- 577 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc-------CceEeec-
Confidence 5557888888888988888887633 234599999999999999999999884 3332211
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---CCCeEEEeCCCC
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVNL 174 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~~~vl~lDE~~~ 174 (369)
.++++...+ |. ...-....+++| .|+|+|+||++.
T Consensus 578 GPELlNkYV--------------------------------GE----------SErAVR~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 578 GPELLNKYV--------------------------------GE----------SERAVRQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred CHHHHHHHh--------------------------------hh----------HHHHHHHHHHHhhcCCCeEEEecchhh
Confidence 011111100 00 000111223333 589999999965
Q ss_pred CCH-----------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 175 LDD-----------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 175 l~~-----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
|-+ .+.+.|+.-|+.. .-...+++|+++|-+ ..+++|+++ ||+-..-++.| ..+
T Consensus 616 L~p~R~~~~s~~s~RvvNqLLtElDGl-----------~~R~gV~viaATNRP-DiIDpAiLRPGRlDk~LyV~lP-n~~ 682 (802)
T KOG0733|consen 616 LVPRRSDEGSSVSSRVVNQLLTELDGL-----------EERRGVYVIAATNRP-DIIDPAILRPGRLDKLLYVGLP-NAE 682 (802)
T ss_pred cCcccCCCCchhHHHHHHHHHHHhccc-----------ccccceEEEeecCCC-cccchhhcCCCccCceeeecCC-CHH
Confidence 543 3567776666531 122468899999953 459999998 89886777777 567
Q ss_pred HHHHHHH
Q 017575 242 LRVKIVE 248 (369)
Q Consensus 242 ~~~~il~ 248 (369)
.+..|++
T Consensus 683 eR~~ILK 689 (802)
T KOG0733|consen 683 ERVAILK 689 (802)
T ss_pred HHHHHHH
Confidence 7778876
No 131
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.6e-12 Score=111.09 Aligned_cols=141 Identities=17% Similarity=0.264 Sum_probs=101.2
Q ss_pred CCCeEEEeCCCCC-----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVNLL-----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~~l-----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
-|.++|+||++.. |.++|..+++++++- . |. ....++-+|.++|..+ -+++||++ |++
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql----d--gf--eatknikvimatnrid-ild~allrpgrid 310 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL----D--GF--EATKNIKVIMATNRID-ILDPALLRPGRID 310 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc----c--cc--ccccceEEEEeccccc-cccHhhcCCCccc
Confidence 5889999999433 667999999998751 1 22 2235788899999655 38999997 899
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCch
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRG 309 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~ 309 (369)
..|++|+| +.+.+.+|++...+ +..+..++ .+..++.++...|.-.
T Consensus 311 rkiefp~p-~e~ar~~ilkihsr-------------------------------kmnl~rgi--~l~kiaekm~gasgae 356 (404)
T KOG0728|consen 311 RKIEFPPP-NEEARLDILKIHSR-------------------------------KMNLTRGI--NLRKIAEKMPGASGAE 356 (404)
T ss_pred ccccCCCC-CHHHHHHHHHHhhh-------------------------------hhchhccc--CHHHHHHhCCCCccch
Confidence 99999998 67778788774321 11111111 1344555554446677
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 310 DIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 310 ~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
...++.-|.-.|...-|-.|+.+|++-|+..|+...-
T Consensus 357 vk~vcteagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 357 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred hhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 8888888988888888889999999999998877544
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.46 E-value=4.2e-12 Score=118.84 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=114.8
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++++| .+|++++|++.++..+...+......+ ++|+||||+|||+++++++..+...- ..++..... ...
T Consensus 13 ~kyrP-~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~----~~i~~~~~~----~~~ 83 (316)
T PHA02544 13 QKYRP-STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV----LFVNGSDCR----IDF 83 (316)
T ss_pred eccCC-CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc----eEeccCccc----HHH
Confidence 44555 489999999999888877763212224 66689999999999999998763110 000000000 000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC-CHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-DDHLVDVLL 184 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l-~~~~~~~L~ 184 (369)
+.. .+. . +.. ... ..+++++++|||++.+ +.+.+..|.
T Consensus 84 i~~---------------------------~l~------~-~~~------~~~-~~~~~~vliiDe~d~l~~~~~~~~L~ 122 (316)
T PHA02544 84 VRN---------------------------RLT------R-FAS------TVS-LTGGGKVIIIDEFDRLGLADAQRHLR 122 (316)
T ss_pred HHH---------------------------HHH------H-HHH------hhc-ccCCCeEEEEECcccccCHHHHHHHH
Confidence 000 000 0 000 000 1134679999999999 777888888
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
.+|++. +....+|+++|.. ..+.+++.+||.. +.++.|+ .+....++...
T Consensus 123 ~~le~~-------------~~~~~~Ilt~n~~-~~l~~~l~sR~~~-i~~~~p~-~~~~~~il~~~-------------- 172 (316)
T PHA02544 123 SFMEAY-------------SKNCSFIITANNK-NGIIEPLRSRCRV-IDFGVPT-KEEQIEMMKQM-------------- 172 (316)
T ss_pred HHHHhc-------------CCCceEEEEcCCh-hhchHHHHhhceE-EEeCCCC-HHHHHHHHHHH--------------
Confidence 888751 2356677888843 4689999999975 8887774 44444454321
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
...+. .......+.++++++..+...... +.|.+.+.+.
T Consensus 173 -------~~~~~-~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 173 -------IVRCK-GILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred -------HHHHH-HHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHH
Confidence 01111 111223577888887777764431 3465554444
No 133
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=1.3e-12 Score=124.78 Aligned_cols=144 Identities=20% Similarity=0.189 Sum_probs=95.8
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC--CCCHhHHhhhc-cceeecCCCC
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG--ELRPQLLDRFG-MHAQVGTVRD 239 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~--~l~~al~~R~~-~~i~~~~~~~ 239 (369)
++.+++|||++.+....+..|..+++-... ......++.+|+++|.... .+.+.+.+||. ..+.++++ +
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~-------~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~-~ 200 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARSN-------GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPY-D 200 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhccccc-------cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCC-C
Confidence 345899999988843323334444321000 0011245777888875332 47788888985 34667666 5
Q ss_pred HHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 240 AELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 240 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
.++...|+..+. .. ......+++++++++..++..... .+|.+.++++.|..
T Consensus 201 ~~e~~~il~~r~------------------------~~---~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~ 252 (365)
T TIGR02928 201 AEELRDILENRA------------------------EK---AFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGE 252 (365)
T ss_pred HHHHHHHHHHHH------------------------Hh---hccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 677777766431 10 112345888999998888765443 67999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHh
Q 017575 320 LAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
.|..++++.|+.+|+.+|+..+.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999887664
No 134
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.45 E-value=1.2e-12 Score=135.38 Aligned_cols=158 Identities=26% Similarity=0.362 Sum_probs=95.6
Q ss_pred CCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
|...+.++.|.+.+++.+...+.- ....++||+||||||||++|++++..+. .+|..+.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-------~~fi~v~- 519 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-------ANFIAVR- 519 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-------CCEEEEe-
Confidence 344788899988887766554420 0122499999999999999999999874 2221100
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC-
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~- 176 (369)
.+++.. ...+..+..+... +.. .....|+|+||||++.+.
T Consensus 520 -----~~~l~~-------------------~~vGese~~i~~~-------------f~~--A~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 520 -----GPEILS-------------------KWVGESEKAIREI-------------FRK--ARQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred -----hHHHhh-------------------cccCcHHHHHHHH-------------HHH--HHhcCCEEEEEEChhhhhc
Confidence 001100 0000000000000 000 112357899999996552
Q ss_pred -----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHH
Q 017575 177 -----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELR 243 (369)
Q Consensus 177 -----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~ 243 (369)
..+.+.|+..|+. + .....+++|+|+|. +..+++++++ ||+..+.++.| +.+.+
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg----~-------~~~~~v~vI~aTn~-~~~ld~allRpgRfd~~i~v~~P-d~~~R 627 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDG----I-------QELSNVVVIAATNR-PDILDPALLRPGRFDRLILVPPP-DEEAR 627 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhc----c-------cCCCCEEEEEeCCC-hhhCCHhhcCCCccceEEEeCCc-CHHHH
Confidence 1244556666653 1 12346889999995 4469999997 99999999999 56777
Q ss_pred HHHHH
Q 017575 244 VKIVE 248 (369)
Q Consensus 244 ~~il~ 248 (369)
..|++
T Consensus 628 ~~i~~ 632 (733)
T TIGR01243 628 KEIFK 632 (733)
T ss_pred HHHHH
Confidence 77755
No 135
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.1e-12 Score=122.22 Aligned_cols=219 Identities=18% Similarity=0.298 Sum_probs=130.4
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec-CCCCCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV-GDPYNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~ 104 (369)
++++|. .|++++|++.+++.+...+......+ ++|+||+|+|||++++.++..+....... ...++..
T Consensus 9 ~k~rP~-~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~--------- 78 (367)
T PRK14970 9 RKYRPQ-TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN--------- 78 (367)
T ss_pred HHHCCC-cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc---------
Confidence 444555 89999999999998888884322223 99999999999999999998874211000 0000000
Q ss_pred hhhhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+.+.. ....+.+. .....- ...+ ..++..++++||++.+....++.
T Consensus 79 --------------------~~~l~~~~~~~~~~i~------~l~~~~--~~~p---~~~~~kiviIDE~~~l~~~~~~~ 127 (367)
T PRK14970 79 --------------------IFELDAASNNSVDDIR------NLIDQV--RIPP---QTGKYKIYIIDEVHMLSSAAFNA 127 (367)
T ss_pred --------------------eEEeccccCCCHHHHH------HHHHHH--hhcc---ccCCcEEEEEeChhhcCHHHHHH
Confidence 000000 00000000 000000 0000 12346799999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..+++ .+....+|++++ ....+.+++.+||.. +.+.+++. +....++..
T Consensus 128 ll~~le~-------------~~~~~~~Il~~~-~~~kl~~~l~sr~~~-v~~~~~~~-~~l~~~l~~------------- 178 (367)
T PRK14970 128 FLKTLEE-------------PPAHAIFILATT-EKHKIIPTILSRCQI-FDFKRITI-KDIKEHLAG------------- 178 (367)
T ss_pred HHHHHhC-------------CCCceEEEEEeC-CcccCCHHHHhccee-EecCCccH-HHHHHHHHH-------------
Confidence 9988875 123444555554 234688999999976 88887753 333333221
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+. ....+.++++++.+|...+. . +.|.+.+.+.....+ .+.. |+.+++++++.
T Consensus 179 ------------~~----~~~g~~i~~~al~~l~~~~~---g-dlr~~~~~lekl~~y---~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 179 ------------IA----VKEGIKFEDDALHIIAQKAD---G-ALRDALSIFDRVVTF---CGKN-ITRQAVTENLN 231 (367)
T ss_pred ------------HH----HHcCCCCCHHHHHHHHHhCC---C-CHHHHHHHHHHHHHh---cCCC-CCHHHHHHHhC
Confidence 11 12256789999988888654 2 567777776654433 2334 88888887765
No 136
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.7e-12 Score=124.15 Aligned_cols=240 Identities=20% Similarity=0.229 Sum_probs=147.5
Q ss_pred CCCccccChHHHHHHhhhhhc---cCC---------CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcc
Q 017575 33 YPFTAIVGQEEMKLCLLLNVI---DPK---------IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPE 100 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~---~~~---------~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 100 (369)
..|.++-|.+++++.+..-+- +|. ..+++|+||||||||.|||++++..+ .||..+..+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~-------VPFf~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-------VPFFSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC-------CCceeccch--
Confidence 478999998888777655541 221 12399999999999999999999983 444332110
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc---CCCeEEEeCCCCCCH
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVNLLDD 177 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a---~~~vl~lDE~~~l~~ 177 (369)
+ ++ +.+.+-......-++.++ -|+|+||||++....
T Consensus 218 ----~-------------------FV------------------emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr 256 (596)
T COG0465 218 ----D-------------------FV------------------EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 256 (596)
T ss_pred ----h-------------------hh------------------hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhccc
Confidence 0 00 000111111112223333 389999999954432
Q ss_pred H-----------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHH
Q 017575 178 H-----------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRV 244 (369)
Q Consensus 178 ~-----------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~ 244 (369)
. -.+.|.+++-+- +|.. -+..+.+++++|-++ -+++||++ ||+..|.++.| +-..++
T Consensus 257 ~Rg~g~GggnderEQTLNQlLvEm------DGF~--~~~gviviaaTNRpd-VlD~ALlRpgRFDRqI~V~~P-Di~gRe 326 (596)
T COG0465 257 QRGAGLGGGNDEREQTLNQLLVEM------DGFG--GNEGVIVIAATNRPD-VLDPALLRPGRFDRQILVELP-DIKGRE 326 (596)
T ss_pred ccCCCCCCCchHHHHHHHHHHhhh------ccCC--CCCceEEEecCCCcc-cchHhhcCCCCcceeeecCCc-chhhHH
Confidence 2 223444444321 1222 235788999999544 38999998 99999999988 455666
Q ss_pred HHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHHHHHH
Q 017575 245 KIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL-NVDGLRGDIVSNRAAKALAAL 323 (369)
Q Consensus 245 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-~~~s~R~~~~ll~~a~a~A~l 323 (369)
.|++- .++ ++.+++++-- ..+++.. |+ |.-.+.+++--|.-+|..
T Consensus 327 ~Ilkv---------------------------H~~----~~~l~~~Vdl--~~iAr~tpGf-sGAdL~nl~NEAal~aar 372 (596)
T COG0465 327 QILKV---------------------------HAK----NKPLAEDVDL--KKIARGTPGF-SGADLANLLNEAALLAAR 372 (596)
T ss_pred HHHHH---------------------------Hhh----cCCCCCcCCH--HHHhhhCCCc-ccchHhhhHHHHHHHHHH
Confidence 77551 111 1222222211 1134332 44 556788889889999999
Q ss_pred cCCCCCCHHHHHHHHhHHhcccccC------CCCCCCChhHHHHHHHHh
Q 017575 324 KGRDKVSAEDIATVMPNCLRHRLRK------DPLESIDSGLLIIEKFYE 366 (369)
Q Consensus 324 ~~~~~v~~~~i~~a~~~vl~~r~~~------~~~~~~~~~~~~~~~~~~ 366 (369)
+++..|+..|+.+|...++..--.. .......++|+.+.++..
T Consensus 373 ~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~ 421 (596)
T COG0465 373 RNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGL 421 (596)
T ss_pred hcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHH
Confidence 9999999999999999988742222 223555677777776654
No 137
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-12 Score=116.60 Aligned_cols=222 Identities=23% Similarity=0.331 Sum_probs=128.5
Q ss_pred cccChHHHHHHhhhhhcc------C---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch
Q 017575 37 AIVGQEEMKLCLLLNVID------P---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA 101 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~------~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 101 (369)
.++||+.+++.++.++.+ . ...++||+||+|||||.||+.+|..+ ..||.... +..
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-------nVPFaiAD--ATt 132 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-------NVPFAIAD--ATT 132 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-------CCCeeecc--ccc
Confidence 368999999998888731 0 12249999999999999999999999 35543210 000
Q ss_pred hhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH----
Q 017575 102 MGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD---- 177 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~---- 177 (369)
+.+ ..++ |+. .+.+. .+.+.. ...-+.+|..||+++||+++...
T Consensus 133 LTE-AGYV---GED------------------VENil-----lkLlqa-----adydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 133 LTE-AGYV---GED------------------VENIL-----LKLLQA-----ADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred hhh-cccc---chh------------------HHHHH-----HHHHHH-----cccCHHHHhCCeEEEechhhhhccCCC
Confidence 000 0000 000 00000 000000 11224557789999999965433
Q ss_pred ----------HHHHHHHHHHhcCCceeeecceeeeecC-ceEEEeecCCC-------C----------------------
Q 017575 178 ----------HLVDVLLDSAASGWNTVEREGISISHPA-RFILIGSGNPE-------E---------------------- 217 (369)
Q Consensus 178 ----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~-~~~li~t~n~~-------~---------------------- 217 (369)
.+|++|+++++.....++-.|. ..||. .|.-|-|+|.. .
T Consensus 181 ~SITRDVSGEGVQQALLKiiEGTvasVPPqGG-RKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~ 259 (408)
T COG1219 181 PSITRDVSGEGVQQALLKIIEGTVASVPPQGG-RKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVK 259 (408)
T ss_pred CCcccccCchHHHHHHHHHHcCceeccCCCCC-CCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccccccc
Confidence 3899999999976555543222 22332 23333333321 0
Q ss_pred ----------------------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHH
Q 017575 218 ----------------------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQI 275 (369)
Q Consensus 218 ----------------------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 275 (369)
..+-|.|.-|+.+...+... +.+...+|+.. .... +-+++
T Consensus 260 ~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~L-de~aLv~ILte----------------PkNA-lvKQY 321 (408)
T COG1219 260 SKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEEL-DEDALVQILTE----------------PKNA-LVKQY 321 (408)
T ss_pred chhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhc-CHHHHHHHHhc----------------ccHH-HHHHH
Confidence 12567778888876777777 56666677662 1112 22333
Q ss_pred HHHHh-hCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 276 ASARS-SLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 276 ~~~~~-~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
..... ..-...++++++..|+..+.+-+. +.|++..++.-...
T Consensus 322 q~Lf~~d~V~L~F~~~AL~~IA~~A~~rkT-GARGLRsI~E~~ll 365 (408)
T COG1219 322 QKLFEMDGVELEFTEEALKAIAKKAIERKT-GARGLRSIIEELLL 365 (408)
T ss_pred HHHhcccCceEEEcHHHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 33332 233578899999999998876555 56888888776543
No 138
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.44 E-value=2.3e-12 Score=125.69 Aligned_cols=174 Identities=21% Similarity=0.255 Sum_probs=97.1
Q ss_pred CCCCCCccccChHHHHHHhhhhhc----c---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeec-CCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI----D---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVV-GDPYNSD 95 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~----~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~ 95 (369)
.|...|++|.|.+..++.+...+. . +...+++|+||||||||+++++++..+...-+.. .......
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 345579999998877766655542 0 1233499999999999999999999884221000 0000000
Q ss_pred CCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC
Q 017575 96 PEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l 175 (369)
. ...+++.. ...+.+...+-..++. .........+.|+||||++.+
T Consensus 256 ~----v~~~eLl~-------------------kyvGete~~ir~iF~~-----------Ar~~a~~g~p~IIfIDEiD~L 301 (512)
T TIGR03689 256 N----IKGPELLN-------------------KYVGETERQIRLIFQR-----------AREKASDGRPVIVFFDEMDSI 301 (512)
T ss_pred e----ccchhhcc-------------------cccchHHHHHHHHHHH-----------HHHHhhcCCCceEEEehhhhh
Confidence 0 00000000 0000000000000000 000011125789999999654
Q ss_pred CH------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 176 DD------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 176 ~~------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
-. ...+.|+..|+. + ....++.+|+|+|.. ..+++|+++ ||+.+|.+++| +.+
T Consensus 302 ~~~R~~~~s~d~e~~il~~LL~~LDg----l-------~~~~~ViVI~ATN~~-d~LDpALlRpGRfD~~I~~~~P-d~e 368 (512)
T TIGR03689 302 FRTRGSGVSSDVETTVVPQLLSELDG----V-------ESLDNVIVIGASNRE-DMIDPAILRPGRLDVKIRIERP-DAE 368 (512)
T ss_pred hcccCCCccchHHHHHHHHHHHHhcc----c-------ccCCceEEEeccCCh-hhCCHhhcCccccceEEEeCCC-CHH
Confidence 21 123455555543 1 112468899999964 459999998 99999999999 577
Q ss_pred HHHHHHHHh
Q 017575 242 LRVKIVEER 250 (369)
Q Consensus 242 ~~~~il~~~ 250 (369)
.+..|+...
T Consensus 369 ~r~~Il~~~ 377 (512)
T TIGR03689 369 AAADIFSKY 377 (512)
T ss_pred HHHHHHHHH
Confidence 788887754
No 139
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.44 E-value=1.3e-12 Score=124.29 Aligned_cols=228 Identities=18% Similarity=0.271 Sum_probs=131.2
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
+..|.+++|++.+++.+...+......| ++|+||||+|||++++.++..+.........+|+.. ..... +
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c-----~~c~~----~ 80 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC-----ESCKE----I 80 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC-----HHHHH----H
Confidence 3479999999999999888774333335 899999999999999999988742210000111110 00000 0
Q ss_pred hccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 111 VKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
..+... .+..+... ...+.+. .....- . ..+ ..++..++++||++.+....++.|++.++
T Consensus 81 ~~~~~~-------~~~~~~~~~~~~~~~~~------~l~~~~--~--~~p-~~~~~~vviidea~~l~~~~~~~Ll~~le 142 (355)
T TIGR02397 81 NSGSSL-------DVIEIDAASNNGVDDIR------EILDNV--K--YAP-SSGKYKVYIIDEVHMLSKSAFNALLKTLE 142 (355)
T ss_pred hcCCCC-------CEEEeeccccCCHHHHH------HHHHHH--h--cCc-ccCCceEEEEeChhhcCHHHHHHHHHHHh
Confidence 001000 00000000 0000000 000000 0 000 12356799999999999999999999987
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQ 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 268 (369)
+ .+.++.+|+++|. ...+.+++.+||.. +.+.+++ .+....++...
T Consensus 143 ~-------------~~~~~~lIl~~~~-~~~l~~~l~sr~~~-~~~~~~~-~~~l~~~l~~~------------------ 188 (355)
T TIGR02397 143 E-------------PPEHVVFILATTE-PHKIPATILSRCQR-FDFKRIP-LEDIVERLKKI------------------ 188 (355)
T ss_pred C-------------CccceeEEEEeCC-HHHHHHHHHhheeE-EEcCCCC-HHHHHHHHHHH------------------
Confidence 5 1335555555552 23577899999965 8888774 44444443321
Q ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 269 AKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.+ ...+.+++++...|.+.+. . ++|.+.+.+..+... .+ ..|+.+++++++.
T Consensus 189 -------~~----~~g~~i~~~a~~~l~~~~~---g-~~~~a~~~lekl~~~---~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 189 -------LD----KEGIKIEDEALELIARAAD---G-SLRDALSLLDQLISF---GN-GNITYEDVNELLG 240 (355)
T ss_pred -------HH----HcCCCCCHHHHHHHHHHcC---C-ChHHHHHHHHHHHhh---cC-CCCCHHHHHHHhC
Confidence 11 1246788888888887663 2 568777766555443 22 3489888887754
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.44 E-value=3.4e-12 Score=128.27 Aligned_cols=263 Identities=19% Similarity=0.175 Sum_probs=151.6
Q ss_pred hhhHHHHhHhhhhcCCCCCCCccccChHHHHHHhhhhhcc----CCCCe-eEEecCCCCChhHHHHHHHhccCcceeecC
Q 017575 15 VNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVID----PKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVG 89 (369)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~----~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~ 89 (369)
.+....+...+.-...| ..+.|+++-.+.|...+.+ ...++ ++|.|+||||||++++.+...+........
T Consensus 738 ~~p~~~A~rvL~~DYVP----D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~ 813 (1164)
T PTZ00112 738 TDPTDKAIRMMQLDVVP----KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKL 813 (1164)
T ss_pred CChHHHHHHHcCcccCC----CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 35555666666554444 3677888776666554421 12234 469999999999999999887743211001
Q ss_pred CC-CCCCCCCcchh--hhhhhhhhhccccchhhhhccccccCCCCC-chHhhhcccchhHHhhhcccccccchhhhcCCC
Q 017575 90 DP-YNSDPEDPEAM--GIEVRESVVKGEELSITFSKINMVDLPLGA-TEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG 165 (369)
Q Consensus 90 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~ 165 (369)
.+ +..+..+|..+ +...+..+.. .+. -..+... ...... ...+... .-......
T Consensus 814 lp~f~vVYINCm~Lstp~sIYqvI~q--qL~--------g~~P~~GlsS~evL-----erLF~~L-------~k~~r~v~ 871 (1164)
T PTZ00112 814 LPSFNVFEINGMNVVHPNAAYQVLYK--QLF--------NKKPPNALNSFKIL-----DRLFNQN-------KKDNRNVS 871 (1164)
T ss_pred CCCceEEEEeCCccCCHHHHHHHHHH--HHc--------CCCCCccccHHHHH-----HHHHhhh-------hcccccce
Confidence 11 21122222111 1111111000 000 0000000 000000 0000000 00001234
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhccceeecCCCCHHHH
Q 017575 166 ILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGMHAQVGTVRDAELR 243 (369)
Q Consensus 166 vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~~i~~~~~~~~~~~ 243 (369)
||+|||++.+....+..|+.+++--. .....+.+|+.+|..+ ..+++.+.+||.....++.|.+.++.
T Consensus 872 IIILDEID~L~kK~QDVLYnLFR~~~----------~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 872 ILIIDEIDYLITKTQKVLFTLFDWPT----------KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEI 941 (1164)
T ss_pred EEEeehHhhhCccHHHHHHHHHHHhh----------ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHH
Confidence 89999999998777888888886311 0124578899998543 23678888998764334466688888
Q ss_pred HHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 017575 244 VKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL 323 (369)
Q Consensus 244 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l 323 (369)
..|+..+. ..+ ...++++++++++..++..+. .+|.++.+++.|...
T Consensus 942 ~dILk~RA------------------------e~A-----~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgEi--- 988 (1164)
T PTZ00112 942 EKIIKERL------------------------ENC-----KEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFEN--- 988 (1164)
T ss_pred HHHHHHHH------------------------HhC-----CCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhh---
Confidence 89977552 111 246899999999997776554 789999999998875
Q ss_pred cCCCCCCHHHHHHHHhHHhcccc
Q 017575 324 KGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 324 ~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
.+...|+++||++|...+...++
T Consensus 989 kegskVT~eHVrkAleeiE~srI 1011 (1164)
T PTZ00112 989 KRGQKIVPRDITEATNQLFDSPL 1011 (1164)
T ss_pred cCCCccCHHHHHHHHHHHHhhhH
Confidence 34568999999999987766554
No 141
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.44 E-value=5.6e-13 Score=122.43 Aligned_cols=108 Identities=26% Similarity=0.274 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC-----------CCCCCHhHHhhhccc
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE-----------EGELRPQLLDRFGMH 231 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~-----------~~~l~~al~~R~~~~ 231 (369)
-||||||||+|+||.+..+.|..+|+.. ....+|.++|.. +..+|..|+||+.+
T Consensus 278 vpGVLFIDEvHmLDiEcFsfLnralEs~--------------~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllI- 342 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFSFLNRALESE--------------LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLI- 342 (398)
T ss_dssp EE-EEEEESGGGSBHHHHHHHHHHHTST--------------T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEE-
T ss_pred ecceEEecchhhccHHHHHHHHHHhcCC--------------CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEE-
Confidence 3899999999999999999999999863 223345555521 23488999999976
Q ss_pred eeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhH
Q 017575 232 AQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDI 311 (369)
Q Consensus 232 i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~ 311 (369)
|...+. ..+....|+. .++....+.++++++.+|..++.+.+ .|.++
T Consensus 343 I~t~py-~~~ei~~Il~-----------------------------iR~~~E~v~i~~~al~~L~~ig~~~S---LRYAi 389 (398)
T PF06068_consen 343 IRTKPY-SEEEIKQILK-----------------------------IRAKEEDVEISEDALDLLTKIGVETS---LRYAI 389 (398)
T ss_dssp EEE-----HHHHHHHHH-----------------------------HHHHHCT--B-HHHHHHHHHHHHHS----HHHHH
T ss_pred EECCCC-CHHHHHHHHH-----------------------------hhhhhhcCcCCHHHHHHHHHHhhhcc---HHHHH
Confidence 777666 5555656644 44556689999999999999998764 59999
Q ss_pred HHHHHHH
Q 017575 312 VSNRAAK 318 (369)
Q Consensus 312 ~ll~~a~ 318 (369)
.|+..|.
T Consensus 390 qLi~~a~ 396 (398)
T PF06068_consen 390 QLITPAS 396 (398)
T ss_dssp HCHHHHH
T ss_pred Hhhhhhh
Confidence 9888765
No 142
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.43 E-value=5.8e-12 Score=131.12 Aligned_cols=224 Identities=19% Similarity=0.208 Sum_probs=148.1
Q ss_pred eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCG 139 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (369)
+||.||+.+|||+++..++... +..|.++..+....-++-.+.+..
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~t-------ghkfVRINNHEHTdlqeYiGTyvT--------------------------- 936 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARET-------GHKFVRINNHEHTDLQEYIGTYVT--------------------------- 936 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHh-------CccEEEecCcccchHHHHhhceee---------------------------
Confidence 9999999999999999999988 455655555444444433332110
Q ss_pred ccchhHHhhhcccccccchhhhc--CCCeEEEeCCCCCCHHHHHHHHHHHhc-CCceeeecceeeeecCceEEEeecCCC
Q 017575 140 TIDIEKALTEGVKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDVLLDSAAS-GWNTVEREGISISHPARFILIGSGNPE 216 (369)
Q Consensus 140 ~~~~~~~~~~g~~~~~~g~~~~a--~~~vl~lDE~~~l~~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~~~~li~t~n~~ 216 (369)
-+.|...++-|.+..| ++.+++|||.|..+.++..+|..+|++ +.+.+++....+..+++|++.||.||+
T Consensus 937 -------dd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNpp 1009 (4600)
T COG5271 937 -------DDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPP 1009 (4600)
T ss_pred -------cCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCC
Confidence 1234445566666555 788999999999999999999999975 556667655555555689999999986
Q ss_pred CCC-----CCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH
Q 017575 217 EGE-----LRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL 291 (369)
Q Consensus 217 ~~~-----l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~ 291 (369)
... ++.|++.||.- ++++..+..+ .+.|+.- .+.+++..
T Consensus 1010 g~YgGRK~LSrAFRNRFlE-~hFddipedE-le~ILh~----------------------------------rc~iapSy 1053 (4600)
T COG5271 1010 GGYGGRKGLSRAFRNRFLE-MHFDDIPEDE-LEEILHG----------------------------------RCEIAPSY 1053 (4600)
T ss_pred ccccchHHHHHHHHhhhHh-hhcccCcHHH-HHHHHhc----------------------------------cCccCHHH
Confidence 532 89999999976 8888775433 3344331 36778888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHH------HHcCCCCCCHHHHHHHHhHHhcccccCCCCCCCChhHHHHHH
Q 017575 292 KVKISKVCAELNVDGLRGDIVSNRAAKALA------ALKGRDKVSAEDIATVMPNCLRHRLRKDPLESIDSGLLIIEK 363 (369)
Q Consensus 292 ~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A------~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~~~~~~~~~~~~~ 363 (369)
...|.+..+++.. -|.+.++...-.+.| .+.+|..|.-+.+...-...+..|.+ .++..+.+.+.++++
T Consensus 1054 akKiVeVyr~Ls~--rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla~~GymllaER~R-~~~dkv~V~~v~ekv 1128 (4600)
T COG5271 1054 AKKIVEVYRGLSS--RRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYMLLAERQR-ELEDKVRVGQVFEKV 1128 (4600)
T ss_pred HHHHHHHHHHhhh--hhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHHHHHHhc-CHHhhhhHHHHHHHH
Confidence 8888888876654 355554544444333 34556777766665554445555553 223333344444443
No 143
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.43 E-value=2.2e-12 Score=126.49 Aligned_cols=236 Identities=17% Similarity=0.136 Sum_probs=142.4
Q ss_pred CCccccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCC---CCCCCcchhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN---SDPEDPEAMGIEVRE 108 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 108 (369)
.+..++|.......+...+.. .....++|.|++||||+++|+.+........ .+|. +.......+.+.+++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~----~~~v~v~c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKD----KRFVAINCAAIPENLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCC----CCeEEEECCCCChHHHHHHhcC
Confidence 345677876554444333211 1222399999999999999999998775321 2221 111111222222221
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
. .. .. -.|......|.+..++++++||||++.+++..|..|+++++
T Consensus 213 ~-------------------------------~~--~~-~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~ 258 (445)
T TIGR02915 213 Y-------------------------------EK--GA-FTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQ 258 (445)
T ss_pred C-------------------------------CC--CC-cCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHh
Confidence 1 00 00 01112234677888999999999999999999999999999
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
++.+.- .|.....+.++.+|++++... +.+.+.|..|+.. +.+.-|+.++...+|....
T Consensus 259 ~~~~~~--~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~~Di~~l~------------ 323 (445)
T TIGR02915 259 ERVIER--LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRDGDAVLLA------------ 323 (445)
T ss_pred hCeEEe--CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhchhhHHHHH------------
Confidence 876433 244445667899999998642 4578889999864 4444444455555553321
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
..+..++.... ......++++++..|..+....++ |.+.+++..|.. ......|+.+|+.
T Consensus 324 ------~~~l~~~~~~~-~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~i~~a~~---~~~~~~i~~~~l~ 383 (445)
T TIGR02915 324 ------NAFLERFAREL-KRKTKGFTDDALRALEAHAWPGNV---RELENKVKRAVI---MAEGNQITAEDLG 383 (445)
T ss_pred ------HHHHHHHHHHh-CCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHHHH---hCCCCcccHHHcC
Confidence 11222222211 122367999999999888765444 888888776554 3334567777753
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5.4e-12 Score=126.84 Aligned_cols=230 Identities=20% Similarity=0.350 Sum_probs=127.9
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
+.+| ..|.+++|++.++..+...+......+ +||+||+|+|||++|++++..+.-... .......|+ . ...
T Consensus 9 kyRP-~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~-----~~~~~~~Cg-~-C~~ 80 (620)
T PRK14948 9 KYRP-QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNS-----DKPTPEPCG-K-CEL 80 (620)
T ss_pred HhCC-CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCc-----CCCCCCCCc-c-cHH
Confidence 3344 489999999999998888774322234 899999999999999999999842110 000001111 1 111
Q ss_pred hhhhhccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
+..+..+...+ ++.+.. ....+.+- ..+..- ...+ ..+...|+||||++++..+.++.|+
T Consensus 81 C~~i~~g~h~D-------~~ei~~~~~~~vd~IR------eii~~a--~~~p---~~~~~KViIIDEad~Lt~~a~naLL 142 (620)
T PRK14948 81 CRAIAAGNALD-------VIEIDAASNTGVDNIR------ELIERA--QFAP---VQARWKVYVIDECHMLSTAAFNALL 142 (620)
T ss_pred HHHHhcCCCcc-------EEEEeccccCCHHHHH------HHHHHH--hhCh---hcCCceEEEEECccccCHHHHHHHH
Confidence 11111111110 000000 00011111 100000 0011 1234569999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
..|++ .+..+.+|++++ .+..+.+++.+||.. +.+..++..+.. ..+.
T Consensus 143 K~LEe-------------Pp~~tvfIL~t~-~~~~llpTIrSRc~~-~~f~~l~~~ei~-~~L~---------------- 190 (620)
T PRK14948 143 KTLEE-------------PPPRVVFVLATT-DPQRVLPTIISRCQR-FDFRRIPLEAMV-QHLS---------------- 190 (620)
T ss_pred HHHhc-------------CCcCeEEEEEeC-ChhhhhHHHHhheeE-EEecCCCHHHHH-HHHH----------------
Confidence 99986 233455555554 234588899999976 888877443322 2211
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATV 337 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a 337 (369)
.+.. ...+.++++++..|...+.. +.|.+.+++... +.+. ..|+.+++.+.
T Consensus 191 ---------~ia~----kegi~is~~al~~La~~s~G----~lr~A~~lLekl---sL~~--~~It~e~V~~l 241 (620)
T PRK14948 191 ---------EIAE----KESIEIEPEALTLVAQRSQG----GLRDAESLLDQL---SLLP--GPITPEAVWDL 241 (620)
T ss_pred ---------HHHH----HhCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH---Hhcc--CCCCHHHHHHH
Confidence 1111 12467888888777777642 457777766543 2232 24666665543
No 145
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.42 E-value=2.1e-12 Score=127.43 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=142.7
Q ss_pred CCccccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCC---CCCCCcchhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN---SDPEDPEAMGIEVRE 108 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 108 (369)
.+..++|.......+...+.. .....++|.|++||||+++|+++....+... .+|. +.......+...+++
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~----~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAK----APFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCC----CCeEeeeCCCCCHHHHHHHhcC
Confidence 456788876554433222211 1222399999999999999999998875321 2221 111111112222211
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
. .. .. ..|......|.+..+++|.+||||++.+++..|..|+.+++
T Consensus 212 ~-------------------------------~~--g~-~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~ 257 (469)
T PRK10923 212 H-------------------------------EK--GA-FTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLA 257 (469)
T ss_pred C-------------------------------CC--CC-CCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHh
Confidence 0 00 00 01112234677888899999999999999999999999999
Q ss_pred cCCceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhc-cceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFG-MHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~-~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
++.+.-. |.....+.++.+|+|++.. .+.+.+.|++||. ..|.+|+. ++...+|...-
T Consensus 258 ~~~~~~~--~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpL--reR~~Di~~l~----------- 322 (469)
T PRK10923 258 DGQFYRV--GGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPL--RERREDIPRLA----------- 322 (469)
T ss_pred cCcEEeC--CCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCc--ccchhhHHHHH-----------
Confidence 8765432 3333445678999998854 2457899999995 44555555 44444453321
Q ss_pred hhhHHHHHHHHHHHHHHHhh-C-CCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSS-L-PAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~-~-~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
...+.+.... . ....++++++..|..+....|+ |.+.++++.+-.. ...+.|+.+|+...+
T Consensus 323 ----------~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~i~~~~~~---~~~~~i~~~~l~~~~ 385 (469)
T PRK10923 323 ----------RHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV---RQLENTCRWLTVM---AAGQEVLIQDLPGEL 385 (469)
T ss_pred ----------HHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHHHHh---CCCCcccHHHCcHhh
Confidence 1112221111 2 2346899999999988876554 8887777665443 345578888875443
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.42 E-value=3.4e-12 Score=133.22 Aligned_cols=224 Identities=17% Similarity=0.219 Sum_probs=125.9
Q ss_pred CccccChHHHHHHhhhhhcc-------CC--CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVID-------PK--IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~-------~~--~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
...++||+.+++.+..++.. +. .+.++|+||+|||||++|++|+..+.... .++.. .++......
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~----~~~i~--id~se~~~~ 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD----DAMVR--IDMSEFMEK 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC----CcEEE--EEhHHhhhh
Confidence 44688999998888777631 11 13489999999999999999998874221 11110 001000000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
. ....++|..........+. .....+.....++++|||++.+++.+++.|++
T Consensus 641 ~--------------------------~~~~LiG~~pgy~g~~~~g--~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ 692 (857)
T PRK10865 641 H--------------------------SVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQ 692 (857)
T ss_pred h--------------------------hHHHHhCCCCcccccchhH--HHHHHHHhCCCCeEEEeehhhCCHHHHHHHHH
Confidence 0 0001111000000000000 00011112234799999999999999999999
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCC------------------------CCCCHhHHhhhccceeecCCCCHH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEE------------------------GELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------------------------~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
+|+++.++-. .|.++... +..+|+|+|... ..+.++|++|++..+.+.++ ..+
T Consensus 693 ile~g~l~d~-~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL-~~e 769 (857)
T PRK10865 693 VLDDGRLTDG-QGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPL-GEQ 769 (857)
T ss_pred HHhhCceecC-CceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCC-CHH
Confidence 9999877642 24444443 456788888521 12678999999876767666 555
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
....|+... +..-..........+.++++++..|......... ++|.+.++++.
T Consensus 770 dl~~Iv~~~--------------------L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~-GARpL~r~I~~ 823 (857)
T PRK10865 770 HIASIAQIQ--------------------LQRLYKRLEERGYEIHISDEALKLLSENGYDPVY-GARPLKRAIQQ 823 (857)
T ss_pred HHHHHHHHH--------------------HHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccC-ChHHHHHHHHH
Confidence 555554422 1111111122223468999999998875543222 34665555443
No 147
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.8e-12 Score=124.46 Aligned_cols=78 Identities=23% Similarity=0.360 Sum_probs=56.9
Q ss_pred CCCeEEEeCCCCCCHH-----------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVNLLDDH-----------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~-----------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
-|+|+||||++...+. +...|+..|++- . ..-+...++.+|+++|-++ .++++|++ ||+
T Consensus 282 aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l----~---~~~~~g~~VlVIgATnRPD-slDpaLRRaGRFd 353 (802)
T KOG0733|consen 282 APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDEL----S---NEKTKGDPVLVIGATNRPD-SLDPALRRAGRFD 353 (802)
T ss_pred CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcc----c---ccccCCCCeEEEecCCCCc-ccCHHHhcccccc
Confidence 5899999999776653 567788888762 1 1112235689999999544 59999997 899
Q ss_pred cceeecCCCCHHHHHHHHHH
Q 017575 230 MHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~ 249 (369)
.-|-+.-| ++..+..|+.-
T Consensus 354 rEI~l~vP-~e~aR~~IL~~ 372 (802)
T KOG0733|consen 354 REICLGVP-SETAREEILRI 372 (802)
T ss_pred ceeeecCC-chHHHHHHHHH
Confidence 88888888 56667777763
No 148
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=2.6e-14 Score=121.31 Aligned_cols=150 Identities=23% Similarity=0.276 Sum_probs=99.5
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 109 (369)
++..-+|+.++++.+.+.+ ..|. +.|+||+|||||||+|||.++-.++++.. +....... +...++..+.-+
T Consensus 7 ~l~K~fg~~~VLkgi~l~v---~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~vGmV 82 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSV---EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKVGMV 82 (240)
T ss_pred eeeEEeCCeEEecCcceeE---cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhcCee
Confidence 5667789999999999999 7888 99999999999999999999988775321 11111111 445567788888
Q ss_pred hhccccchhhhhccccccCC-------CCCchHhhh------cccch----hHHhhhcccccccchhhhc---CCCeEEE
Q 017575 110 VVKGEELSITFSKINMVDLP-------LGATEDRVC------GTIDI----EKALTEGVKAFEPGLLAKA---NRGILYV 169 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------~~~~~----~~~~~~g~~~~~~g~~~~a---~~~vl~l 169 (369)
||+.+++++.++..++..-+ ....++... |..+. ...++||+.+... +++| +|.++++
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA--IARALaM~P~vmLF 160 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA--IARALAMDPKVMLF 160 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH--HHHHHcCCCCEEee
Confidence 99999999887654332221 111111111 11111 1223444433221 1112 8999999
Q ss_pred eCC-CCCCHHHHHHHHHHHhc
Q 017575 170 DEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 170 DE~-~~l~~~~~~~L~~~l~~ 189 (369)
||| ..|||+.....+++|.+
T Consensus 161 DEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHH
Confidence 999 78999999888888875
No 149
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5e-12 Score=124.37 Aligned_cols=163 Identities=28% Similarity=0.418 Sum_probs=102.9
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc---------C---CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID---------P---KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~---------~---~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
-|...+++|-|-++++..|.-++-- . ++.+|+|+||||||||.+||++|..+. .+|--+.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVK- 737 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVK- 737 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeec-
Confidence 3556788998877777766555421 0 133499999999999999999998874 1111110
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~ 177 (369)
.|+++.. ..+..++.+-. ++.. -..|.|+|+|+||++.+.|
T Consensus 738 GPELLNM------------------------YVGqSE~NVR~-------------VFer--AR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 738 GPELLNM------------------------YVGQSEENVRE-------------VFER--ARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred CHHHHHH------------------------HhcchHHHHHH-------------HHHH--hhccCCeEEEeccccccCc
Confidence 1111111 11111111110 0111 1235799999999977765
Q ss_pred H-------------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHH
Q 017575 178 H-------------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAEL 242 (369)
Q Consensus 178 ~-------------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~ 242 (369)
. +.++|+.-|+. ..-....++++|+++|. +..++++|++ ||+--+.+....+.+.
T Consensus 779 ~RG~sGDSGGVMDRVVSQLLAELDg---------ls~~~s~~VFViGATNR-PDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 779 NRGRSGDSGGVMDRVVSQLLAELDG---------LSDSSSQDVFVIGATNR-PDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred cCCCCCCccccHHHHHHHHHHHhhc---------ccCCCCCceEEEecCCC-ccccChhhcCCCccceeEEecCCccHHH
Confidence 3 55666666653 11112357899999995 4469999998 9998888888888888
Q ss_pred HHHHHHH
Q 017575 243 RVKIVEE 249 (369)
Q Consensus 243 ~~~il~~ 249 (369)
..+++..
T Consensus 849 k~~vL~A 855 (953)
T KOG0736|consen 849 KLRVLEA 855 (953)
T ss_pred HHHHHHH
Confidence 8777764
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.8e-12 Score=120.12 Aligned_cols=239 Identities=23% Similarity=0.222 Sum_probs=148.9
Q ss_pred ccccChHHHHHHhhhhhccC----CCCeeEEecCCCCChhHHHHHHHhccCcceeecC-CCCCCCCC-Ccchhhhhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDP----KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVG-DPYNSDPE-DPEAMGIEVRES 109 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~----~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 109 (369)
..+.+++.-+..+...+.+. ...+++++||||||||.+++.+++.+........ ..+|+... ++-..-..+...
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 34667776666665554321 2223999999999999999999999975532111 11122111 111111111111
Q ss_pred hhccccchhhhhccccccCCC-CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 110 VVKGEELSITFSKINMVDLPL-GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
+. .+|. +......... +....-.....-|++|||++.+-......|+.++.
T Consensus 97 ~~---------------~~p~~g~~~~~~~~~-------------l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r 148 (366)
T COG1474 97 LG---------------KVPLTGDSSLEILKR-------------LYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR 148 (366)
T ss_pred cC---------------CCCCCCCchHHHHHH-------------HHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh
Confidence 10 0110 0000010000 00000011234599999998877665567777665
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKA 266 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 266 (369)
.... + ...+.+|+.+|..+ ..+++-+.++|...-..++|++.++...|+..|.
T Consensus 149 ~~~~-----~-----~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~--------------- 203 (366)
T COG1474 149 APGE-----N-----KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV--------------- 203 (366)
T ss_pred hccc-----c-----ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH---------------
Confidence 3211 1 34677888888543 3378889999877555666778888989988552
Q ss_pred HHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 267 EQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 267 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
......-.++++++++++.++...+. ++|.++++++.|.-+|..++++.++++|+..|-..
T Consensus 204 ------------~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 204 ------------EEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred ------------HhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 22244678899999999998887665 78999999999999999999999999999999443
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.40 E-value=5.3e-12 Score=131.46 Aligned_cols=223 Identities=17% Similarity=0.271 Sum_probs=129.8
Q ss_pred ccccChHHHHHHhhhhhc-------cCC--CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVI-------DPK--IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~-------~~~--~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
..++||+.+++.+.-++. ++. .|.++|+||+|||||.+|++++..+.... ..+.. .+......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~----~~~~~--~dmse~~~-- 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE----QNLIT--INMSEFQE-- 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC----cceEE--EeHHHhhh--
Confidence 357899999888877763 121 12389999999999999999999884211 00000 00000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
... + ..++.-+ .|+.+.. .+|. + ...+.....+|++|||++.+++.+++.|+++
T Consensus 638 ------~~~-----~-~~l~g~~--------~gyvg~~---~~g~--L-~~~v~~~p~svvllDEieka~~~v~~~Llq~ 691 (852)
T TIGR03345 638 ------AHT-----V-SRLKGSP--------PGYVGYG---EGGV--L-TEAVRRKPYSVVLLDEVEKAHPDVLELFYQV 691 (852)
T ss_pred ------hhh-----h-ccccCCC--------CCccccc---ccch--H-HHHHHhCCCcEEEEechhhcCHHHHHHHHHH
Confidence 000 0 0000000 0000000 0010 0 0112223568999999999999999999999
Q ss_pred HhcCCceeeecceeeeecCceEEEeecCCCC----------------------------CCCCHhHHhhhccceeecCCC
Q 017575 187 AASGWNTVEREGISISHPARFILIGSGNPEE----------------------------GELRPQLLDRFGMHAQVGTVR 238 (369)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~----------------------------~~l~~al~~R~~~~i~~~~~~ 238 (369)
|++|.++-. .|..+... +..+|+|+|... ..+.++|++|+++ |.+.++
T Consensus 692 ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~i-I~F~pL- 767 (852)
T TIGR03345 692 FDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTV-IPYLPL- 767 (852)
T ss_pred hhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeE-EEeCCC-
Confidence 999987654 36666655 577788877411 0177899999984 777777
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
+.+...+|+.... ..+.+++.. ...-.+.+++++.++|.+.+..... +.|.+.+++..
T Consensus 768 s~e~l~~Iv~~~L-----------------~~l~~rl~~--~~gi~l~i~d~a~~~La~~g~~~~~-GAR~L~r~Ie~ 825 (852)
T TIGR03345 768 DDDVLAAIVRLKL-----------------DRIARRLKE--NHGAELVYSEALVEHIVARCTEVES-GARNIDAILNQ 825 (852)
T ss_pred CHHHHHHHHHHHH-----------------HHHHHHHHH--hcCceEEECHHHHHHHHHHcCCCCC-ChHHHHHHHHH
Confidence 5666667766321 001111111 1123578999999999987754333 45766665544
No 152
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-12 Score=119.47 Aligned_cols=155 Identities=24% Similarity=0.382 Sum_probs=96.8
Q ss_pred CCccccChHHHHHHhhhhhccC-------CC-------CeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDP-------KI-------GGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDP 99 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~-------~~-------g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 99 (369)
.|.+|-|-+.+++++...++-| +. .+|||+||||||||++|++++.... .+|..
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag-------a~fIn----- 157 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG-------ANFIN----- 157 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC-------CCcce-----
Confidence 6888888888888776665422 11 2399999999999999999999984 22211
Q ss_pred chhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCCCCC
Q 017575 100 EAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVNLLD 176 (369)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~~l~ 176 (369)
+..+...++++|.- ..+....+. +-.|.++||||++.+-
T Consensus 158 ----------------------------v~~s~lt~KWfgE~----------eKlv~AvFslAsKl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 158 ----------------------------VSVSNLTSKWFGEA----------QKLVKAVFSLASKLQPSIIFIDEVDSFL 199 (386)
T ss_pred ----------------------------eeccccchhhHHHH----------HHHHHHHHhhhhhcCcceeehhhHHHHH
Confidence 11111111222110 011111111 2368999999994332
Q ss_pred -------HH----HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHH
Q 017575 177 -------DH----LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVK 245 (369)
Q Consensus 177 -------~~----~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~ 245 (369)
-+ ..+.++...+ |..-.....+++++++|- +..+++|+++|+.-+++++-| ...++.+
T Consensus 200 ~~R~s~dHEa~a~mK~eFM~~WD---------Gl~s~~~~rVlVlgATNR-P~DlDeAiiRR~p~rf~V~lP-~~~qR~k 268 (386)
T KOG0737|consen 200 GQRRSTDHEATAMMKNEFMALWD---------GLSSKDSERVLVLGATNR-PFDLDEAIIRRLPRRFHVGLP-DAEQRRK 268 (386)
T ss_pred hhcccchHHHHHHHHHHHHHHhc---------cccCCCCceEEEEeCCCC-CccHHHHHHHhCcceeeeCCC-chhhHHH
Confidence 11 2233333332 222233346899999994 567999999999999999999 5777888
Q ss_pred HHHH
Q 017575 246 IVEE 249 (369)
Q Consensus 246 il~~ 249 (369)
|++.
T Consensus 269 ILkv 272 (386)
T KOG0737|consen 269 ILKV 272 (386)
T ss_pred HHHH
Confidence 8773
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=8.6e-12 Score=125.38 Aligned_cols=231 Identities=18% Similarity=0.291 Sum_probs=133.5
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee-ecCCCCCCCCCCcchhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV-VVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~ 104 (369)
++++|. .|++++||+.+++.+...+......| +||+||+|+|||+++++++..+.-... ..+..|+.. .
T Consensus 9 ~kyRP~-~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C--------~ 79 (614)
T PRK14971 9 RKYRPS-TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC--------E 79 (614)
T ss_pred HHHCCC-CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc--------h
Confidence 445554 89999999999999988884323335 899999999999999999998731100 001111110 0
Q ss_pred hhhhhhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
.+..|..+... ++..+... ...+.+. ..+.. ....+ ..++..|++|||++++....++.
T Consensus 80 -sC~~~~~~~~~-------n~~~ld~~~~~~vd~Ir------~li~~----~~~~P-~~~~~KVvIIdea~~Ls~~a~na 140 (614)
T PRK14971 80 -SCVAFNEQRSY-------NIHELDAASNNSVDDIR------NLIEQ----VRIPP-QIGKYKIYIIDEVHMLSQAAFNA 140 (614)
T ss_pred -HHHHHhcCCCC-------ceEEecccccCCHHHHH------HHHHH----HhhCc-ccCCcEEEEEECcccCCHHHHHH
Confidence 00001111000 00011000 0011111 00000 00000 12345699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
|+..|++ .|....+|++++ ....+.+++.+||.+ +.+.+++..+.. ..+.
T Consensus 141 LLK~LEe-------------pp~~tifIL~tt-~~~kIl~tI~SRc~i-v~f~~ls~~ei~-~~L~-------------- 190 (614)
T PRK14971 141 FLKTLEE-------------PPSYAIFILATT-EKHKILPTILSRCQI-FDFNRIQVADIV-NHLQ-------------- 190 (614)
T ss_pred HHHHHhC-------------CCCCeEEEEEeC-CchhchHHHHhhhhe-eecCCCCHHHHH-HHHH--------------
Confidence 9999987 234555666555 235689999999987 888888543332 2322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
++.. ...+.++++++.+|++.+. . +.|.+.+.+.....+ .|.. |+.+++.+.+
T Consensus 191 -----------~ia~----~egi~i~~~al~~La~~s~---g-dlr~al~~Lekl~~y---~~~~-It~~~V~~~l 243 (614)
T PRK14971 191 -----------YVAS----KEGITAEPEALNVIAQKAD---G-GMRDALSIFDQVVSF---TGGN-ITYKSVIENL 243 (614)
T ss_pred -----------HHHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh---ccCC-ccHHHHHHHh
Confidence 1111 1257889998888887774 2 568777777554433 2322 6666555443
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.40 E-value=4e-12 Score=133.16 Aligned_cols=219 Identities=18% Similarity=0.258 Sum_probs=128.7
Q ss_pred ccccChHHHHHHhhhhhccCC---------CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPK---------IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~---------~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
..++||+.+++.+..++.... .+.++|+||+|||||++|++|+..+.... .++... ++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~----~~~i~~--d~s~~~~~~ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE----DAMVRI--DMSEYMEKH 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC----CcEEEE--echhhcccc
Confidence 358999999998887774211 23399999999999999999999884321 111110 000000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcc----cchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGT----IDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
....+.|. .+.. .+|. + .+.+......|+||||++.+++.+++.
T Consensus 639 --------------------------~~~~l~g~~~g~~g~~---~~g~--l-~~~v~~~p~~vlllDeieka~~~v~~~ 686 (852)
T TIGR03346 639 --------------------------SVARLIGAPPGYVGYE---EGGQ--L-TEAVRRKPYSVVLFDEVEKAHPDVFNV 686 (852)
T ss_pred --------------------------hHHHhcCCCCCccCcc---cccH--H-HHHHHcCCCcEEEEeccccCCHHHHHH
Confidence 00001100 0000 0000 0 011111234599999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCC------------------------CCCCHhHHhhhccceeecCCC
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEE------------------------GELRPQLLDRFGMHAQVGTVR 238 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------------------------~~l~~al~~R~~~~i~~~~~~ 238 (369)
|+++|++|.++-. .|.++... +..+|+|+|... ..+.++|+.|++..+.+.++
T Consensus 687 Ll~~l~~g~l~d~-~g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL- 763 (852)
T TIGR03346 687 LLQVLDDGRLTDG-QGRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPL- 763 (852)
T ss_pred HHHHHhcCceecC-CCeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCc-
Confidence 9999999987643 34455443 577889998521 12668899999875666655
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
..+...+|+.... ..+.+.+ ....-.+.+++++...|......... +.|.+.+.+..
T Consensus 764 ~~e~l~~I~~l~L-----------------~~l~~~l---~~~~~~l~i~~~a~~~L~~~~~~~~~-gaR~L~~~i~~ 820 (852)
T TIGR03346 764 GREQIARIVEIQL-----------------GRLRKRL---AERKITLELSDAALDFLAEAGYDPVY-GARPLKRAIQR 820 (852)
T ss_pred CHHHHHHHHHHHH-----------------HHHHHHH---HHCCCeecCCHHHHHHHHHhCCCCCC-CchhHHHHHHH
Confidence 6777778866421 1112222 11122478999999999886542122 44766665544
No 155
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.40 E-value=8.3e-12 Score=122.86 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=143.0
Q ss_pred CccccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCC---CCCCCCcchhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPY---NSDPEDPEAMGIEVRES 109 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 109 (369)
+..++|.......+.-.+.. .....+++.|++|+||+++++.+....... +.++ ++.......+.+.+++.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~----~~~~~~i~c~~~~~~~~~~~lfg~ 217 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA----KGPFIKVNCAALPESLLESELFGH 217 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC----CCCeEEEECCCCCHHHHHHHhcCC
Confidence 44577765543333222210 123349999999999999999998765422 1222 11111122222222211
Q ss_pred hhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 110 VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.. . ...|......|.+..++++++||||++.+++..|..|+.++++
T Consensus 218 -------------------------------~~--~-~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~ 263 (457)
T PRK11361 218 -------------------------------EK--G-AFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQE 263 (457)
T ss_pred -------------------------------CC--C-CCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhc
Confidence 00 0 0012223346778888999999999999999999999999998
Q ss_pred CCceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhh
Q 017575 190 GWNTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDS 263 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 263 (369)
+.+.- .|.....+.++.+|+|+|.. .+.+.+.+..|+.. +.+.-|+.++...+|....
T Consensus 264 ~~~~~--~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~------------- 327 (457)
T PRK11361 264 REFER--IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLA------------- 327 (457)
T ss_pred CcEEe--CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHH-------------
Confidence 76442 24444556788999999854 24578889999865 5555555555555553321
Q ss_pred hHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 264 YKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
..+..++.. ........+++++++.|..+....++ |.+.+++..+.. ......|+.+|+...+
T Consensus 328 -----~~~l~~~~~-~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~~~~~~~---~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 328 -----NHFLQKFSS-ENQRDIIDIDPMAMSLLTAWSWPGNI---RELSNVIERAVV---MNSGPIIFSEDLPPQI 390 (457)
T ss_pred -----HHHHHHHHH-HcCCCCCCcCHHHHHHHHcCCCCCcH---HHHHHHHHHHHH---hCCCCcccHHHChHhh
Confidence 111122211 11122357899999998888765444 888777776543 3445578888876443
No 156
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.40 E-value=1.3e-11 Score=109.33 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=110.6
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCce-EEEeecCCCCCCCCHhHHhhhccceeecCCCCHH
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARF-ILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
-|+|+|+||+++||-+.++.|...+++....+. .+..+..+ .+-+|..+-+..++-.|+||..+ |...+. ..+
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~~Pii----imaTNrgit~iRGTn~~SphGiP~D~lDR~lI-I~t~py-~~~ 361 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDMAPII----IMATNRGITRIRGTNYRSPHGIPIDLLDRMLI-ISTQPY-TEE 361 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhccCcEE----EEEcCCceEEeecCCCCCCCCCcHHHhhhhhe-eecccC-cHH
Confidence 589999999999999999999999987532221 11112222 22333335556699999999876 655544 455
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
....|+. .++....+.++++++.+|..+.... |.|.++.|+..|...+
T Consensus 362 d~~~IL~-----------------------------iRc~EEdv~m~~~A~d~Lt~i~~~t---sLRYai~Lit~a~~~~ 409 (454)
T KOG2680|consen 362 DIKKILR-----------------------------IRCQEEDVEMNPDALDLLTKIGEAT---SLRYAIHLITAASLVC 409 (454)
T ss_pred HHHHHHH-----------------------------hhhhhhccccCHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHH
Confidence 5555544 4566678999999999999988765 5599999999999999
Q ss_pred HHcCCCCCCHHHHHHHHhHHhccccc
Q 017575 322 ALKGRDKVSAEDIATVMPNCLRHRLR 347 (369)
Q Consensus 322 ~l~~~~~v~~~~i~~a~~~vl~~r~~ 347 (369)
..+....|..+|+..+..+.|..+-.
T Consensus 410 ~krk~~~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 410 LKRKGKVVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred HHhcCceeehhHHHHHHHHHhhhhhh
Confidence 99988899999999999988876543
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.40 E-value=4.2e-12 Score=132.61 Aligned_cols=217 Identities=17% Similarity=0.202 Sum_probs=127.2
Q ss_pred ccccChHHHHHHhhhhhcc-------CC--CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVID-------PK--IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~-------~~--~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
..++||+.+++.+..++.. +. .+.++|+||+|||||++|++|+..+.... .++... +......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~----~~~~~~--d~s~~~~-- 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE----DAMIRL--DMSEYME-- 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc----cceEEE--Echhccc--
Confidence 3578999999988777641 11 12389999999999999999999874221 111000 0000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhc----ccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCG----TIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDV 182 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~ 182 (369)
......+.| +.+.. .++. + ...+......|+++||++++++.+++.
T Consensus 581 ------------------------~~~~~~l~g~~~gyvg~~---~~~~--l-~~~~~~~p~~VvllDeieka~~~v~~~ 630 (821)
T CHL00095 581 ------------------------KHTVSKLIGSPPGYVGYN---EGGQ--L-TEAVRKKPYTVVLFDEIEKAHPDIFNL 630 (821)
T ss_pred ------------------------cccHHHhcCCCCcccCcC---ccch--H-HHHHHhCCCeEEEECChhhCCHHHHHH
Confidence 000001111 00000 0000 0 011111223699999999999999999
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------------------------------CCCHhHHh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------------------------------ELRPQLLD 226 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------------------------------~l~~al~~ 226 (369)
|+++|++|.++.. .|.++.. .+..+|+|+|.... .+.++|++
T Consensus 631 Llq~le~g~~~d~-~g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln 708 (821)
T CHL00095 631 LLQILDDGRLTDS-KGRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN 708 (821)
T ss_pred HHHHhccCceecC-CCcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc
Confidence 9999999987754 3556655 46788888884210 14578999
Q ss_pred hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCC
Q 017575 227 RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDG 306 (369)
Q Consensus 227 R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s 306 (369)
|++-.+.+.+. ..+...+|+... +..-..+.....-.+.+++++...|.+....... +
T Consensus 709 Rid~ii~F~pL-~~~~l~~Iv~~~--------------------l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~-G 766 (821)
T CHL00095 709 RLDEIIVFRQL-TKNDVWEIAEIM--------------------LKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLY-G 766 (821)
T ss_pred cCCeEEEeCCC-CHHHHHHHHHHH--------------------HHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCC-C
Confidence 99766777777 566666776532 1111111222233588999999988886433222 3
Q ss_pred CchhHHHH
Q 017575 307 LRGDIVSN 314 (369)
Q Consensus 307 ~R~~~~ll 314 (369)
.|.+.+++
T Consensus 767 AR~l~r~i 774 (821)
T CHL00095 767 ARPLRRAI 774 (821)
T ss_pred hhhHHHHH
Confidence 46555544
No 158
>PRK06893 DNA replication initiation factor; Validated
Probab=99.39 E-value=7.9e-12 Score=111.29 Aligned_cols=131 Identities=9% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC---CCHhHHhhhc--cceeec
Q 017575 163 NRGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE---LRPQLLDRFG--MHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~---l~~al~~R~~--~~i~~~ 235 (369)
+.++++|||++.+. ...+..|+.+++...- .....++.|+|..+.. ..+.|.+|+. ..+.+.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-----------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~ 159 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-----------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN 159 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-----------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC
Confidence 35699999998763 4556678887764210 0122334455433333 3489999985 457888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+.+..|++.. ...+.+.+++++..+|...+.. +.|.+..++.
T Consensus 160 ~p-d~e~~~~iL~~~-----------------------------a~~~~l~l~~~v~~~L~~~~~~----d~r~l~~~l~ 205 (229)
T PRK06893 160 DL-TDEQKIIVLQRN-----------------------------AYQRGIELSDEVANFLLKRLDR----DMHTLFDALD 205 (229)
T ss_pred CC-CHHHHHHHHHHH-----------------------------HHHcCCCCCHHHHHHHHHhccC----CHHHHHHHHH
Confidence 88 566666665532 1122589999999999887753 6788888877
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 316 AAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
..-..+...++ .|+.+.+++++.
T Consensus 206 ~l~~~~~~~~~-~it~~~v~~~L~ 228 (229)
T PRK06893 206 LLDKASLQAQR-KLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHhcCC-CCCHHHHHHHhc
Confidence 76443343345 699999988764
No 159
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.3e-12 Score=115.64 Aligned_cols=155 Identities=19% Similarity=0.296 Sum_probs=97.9
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc---------CC---CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID---------PK---IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~---------~~---~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.|...++++-|-+.+++++..+++= .. ...+||+||||||||+||++++.... + .
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-S------T------ 193 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-S------T------ 193 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-C------c------
Confidence 3555788999988888888777641 11 22399999999999999999998873 1 1
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCCC
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVNL 174 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~~ 174 (369)
+|.++.+.-..++.|.. ..+...++. +.+|.|+||||++.
T Consensus 194 ---------------------------FFSvSSSDLvSKWmGES----------EkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 194 ---------------------------FFSVSSSDLVSKWMGES----------EKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---------------------------eEEeehHHHHHHHhccH----------HHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11111111111222111 112222222 34789999999954
Q ss_pred CC-----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHH
Q 017575 175 LD-----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELR 243 (369)
Q Consensus 175 l~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~ 243 (369)
+- ..+...|+-.|+. ++ .....+.+++++| .+.-++.|+++||.-+|-++.| ....+
T Consensus 237 lcg~r~enEseasRRIKTEfLVQMqG----VG------~d~~gvLVLgATN-iPw~LDsAIRRRFekRIYIPLP-e~~AR 304 (439)
T KOG0739|consen 237 LCGSRSENESEASRRIKTEFLVQMQG----VG------NDNDGVLVLGATN-IPWVLDSAIRRRFEKRIYIPLP-EAHAR 304 (439)
T ss_pred hccCCCCCchHHHHHHHHHHHHhhhc----cc------cCCCceEEEecCC-CchhHHHHHHHHhhcceeccCC-cHHHh
Confidence 42 2245566666653 11 1234688999999 4667999999999999999888 44555
Q ss_pred HHH
Q 017575 244 VKI 246 (369)
Q Consensus 244 ~~i 246 (369)
..+
T Consensus 305 ~~M 307 (439)
T KOG0739|consen 305 ARM 307 (439)
T ss_pred hhh
Confidence 444
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.38 E-value=2.2e-11 Score=108.81 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=84.1
Q ss_pred CeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC---CCHhHHhhhc--cceeecCC
Q 017575 165 GILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE---LRPQLLDRFG--MHAQVGTV 237 (369)
Q Consensus 165 ~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~---l~~al~~R~~--~~i~~~~~ 237 (369)
++++|||++.+. +..+..|+.+++... . .....+|.|++..+.. +.++|.+||. ..+.+.+|
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~---e--------~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~ 167 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRIL---E--------SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL 167 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHH---H--------cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCC
Confidence 599999998774 555666766665410 0 0122344455433333 5799999994 45889888
Q ss_pred CCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 017575 238 RDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAA 317 (369)
Q Consensus 238 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a 317 (369)
+ .+....++..+ +. .+.+.+++++.++|...+.. +.|.+..++...
T Consensus 168 ~-~~~~~~~l~~~---------------------------a~--~~~~~l~~~v~~~L~~~~~~----d~r~l~~~l~~l 213 (235)
T PRK08084 168 S-DEEKLQALQLR---------------------------AR--LRGFELPEDVGRFLLKRLDR----EMRTLFMTLDQL 213 (235)
T ss_pred C-HHHHHHHHHHH---------------------------HH--HcCCCCCHHHHHHHHHhhcC----CHHHHHHHHHHH
Confidence 4 55555565422 11 12589999999999988764 678888888876
Q ss_pred HHHHHHcCCCCCCHHHHHHHHh
Q 017575 318 KALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 318 ~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
...+...++ .|+.+.+++++.
T Consensus 214 ~~~~l~~~~-~it~~~~k~~l~ 234 (235)
T PRK08084 214 DRASITAQR-KLTIPFVKEILK 234 (235)
T ss_pred HHHHHhcCC-CCCHHHHHHHHc
Confidence 434434444 499999888764
No 161
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.38 E-value=8.2e-12 Score=111.06 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=121.6
Q ss_pred CCCCcccc--ChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhh
Q 017575 32 VYPFTAIV--GQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 32 ~~~~~~i~--G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
..+|++.+ ++..+++.+...+.....++++|+||+|||||++++.++....... .++ ...++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~--~~i~~~~~~~~---- 80 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG----KSA--IYLPLAELAQA---- 80 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcE--EEEeHHHHHHh----
Confidence 34566665 2455666665543222334499999999999999999998763110 000 00000000000
Q ss_pred hhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHH--HHHHHHHH
Q 017575 110 VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL--VDVLLDSA 187 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~--~~~L~~~l 187 (369)
. ...+. .+ .+.++++|||++.++... +..|..++
T Consensus 81 ---------------------------~------~~~~~---------~~--~~~~lLvIDdi~~l~~~~~~~~~L~~~l 116 (226)
T TIGR03420 81 ---------------------------D------PEVLE---------GL--EQADLVCLDDVEAIAGQPEWQEALFHLY 116 (226)
T ss_pred ---------------------------H------HHHHh---------hc--ccCCEEEEeChhhhcCChHHHHHHHHHH
Confidence 0 00000 01 124699999999988744 78888887
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCCC--CC-HhHHhhhc--cceeecCCCCHHHHHHHHHHhhhccCCChHHHh
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEGE--LR-PQLLDRFG--MHAQVGTVRDAELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~--l~-~al~~R~~--~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 262 (369)
+... .....+|.|++..... .. +.+.+||. ..+.+++++. +....++...
T Consensus 117 ~~~~------------~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~-~e~~~~l~~~------------ 171 (226)
T TIGR03420 117 NRVR------------EAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD-EEKIAALQSR------------ 171 (226)
T ss_pred HHHH------------HcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH-HHHHHHHHHH------------
Confidence 6410 0112345565533322 33 78999984 5688888854 4444443311
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 263 SYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
.. ...+.++++++..|.... +. +.|.+..+++.+...+...+ ..|+.+.+.+++
T Consensus 172 -------------~~----~~~~~~~~~~l~~L~~~~---~g-n~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 172 -------------AA----RRGLQLPDEVADYLLRHG---SR-DMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred -------------HH----HcCCCCCHHHHHHHHHhc---cC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 11 124789999999888843 22 56999999999887666655 469998888765
No 162
>PRK04195 replication factor C large subunit; Provisional
Probab=99.37 E-value=1e-11 Score=122.58 Aligned_cols=204 Identities=21% Similarity=0.249 Sum_probs=117.8
Q ss_pred CCCCCccccChHHHHHHhhhhhccCC----CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPK----IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~----~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
.+..+++++|++.++..+...+.... ..+++|+||||+|||+++++++..+...-. .++.. +......
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~i----elnas----d~r~~~~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVI----ELNAS----DQRTADV 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEE----EEccc----ccccHHH
Confidence 33479999999998777755442111 233999999999999999999998842110 00000 0000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH----HHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD----HLVDV 182 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~----~~~~~ 182 (369)
.. .+.+ ... . ...+...++.+++|||++.+.. ..++.
T Consensus 81 i~---------------------------~~i~---------~~~-~--~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~a 121 (482)
T PRK04195 81 IE---------------------------RVAG---------EAA-T--SGSLFGARRKLILLDEVDGIHGNEDRGGARA 121 (482)
T ss_pred HH---------------------------HHHH---------Hhh-c--cCcccCCCCeEEEEecCcccccccchhHHHH
Confidence 00 0000 000 0 0001102467999999988865 56788
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCH-hHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRP-QLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~-al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
|+.+++.. ...+|+++|.. ..+.. .+.+||.. +.+++|+.. ....++.
T Consensus 122 L~~~l~~~---------------~~~iIli~n~~-~~~~~k~Lrsr~~~-I~f~~~~~~-~i~~~L~------------- 170 (482)
T PRK04195 122 ILELIKKA---------------KQPIILTANDP-YDPSLRELRNACLM-IEFKRLSTR-SIVPVLK------------- 170 (482)
T ss_pred HHHHHHcC---------------CCCEEEeccCc-cccchhhHhccceE-EEecCCCHH-HHHHHHH-------------
Confidence 88888642 12245566632 34555 78888865 899888543 3333322
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATV 337 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a 337 (369)
.+.. ...+.++++++..|++.+. . +.|.+++.+.. +..+...++.+++..+
T Consensus 171 ------------~i~~----~egi~i~~eaL~~Ia~~s~---G-DlR~ain~Lq~-----~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 171 ------------RICR----KEGIECDDEALKEIAERSG---G-DLRSAINDLQA-----IAEGYGKLTLEDVKTL 221 (482)
T ss_pred ------------HHHH----HcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHH-----HhcCCCCCcHHHHHHh
Confidence 1111 2357789999888877653 2 56877776654 2235556777777544
No 163
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=5.6e-12 Score=120.14 Aligned_cols=171 Identities=17% Similarity=0.240 Sum_probs=99.5
Q ss_pred CCccccChHHHHHHhhhhhccCC---------CCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPK---------IGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~---------~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
.|++|+||+.+++.+.-.+..+. ..| ++|+||+|+|||++|+.++..+.-.... +.+|+ ..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg--------~C 73 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCG--------EC 73 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCC--------CC
Confidence 47899999999998888875432 345 9999999999999999999877311100 01111 00
Q ss_pred hhhhhhhhccccchhhhhccccccCCCC---CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLG---ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLV 180 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~ 180 (369)
....... .+..- .+..+... ...+.+- .....- ...+ ..++..|+||||++++++..+
T Consensus 74 ~~C~~~~-~~~hp-------D~~~i~~~~~~i~i~~iR------~l~~~~--~~~p---~~~~~kViiIDead~m~~~aa 134 (394)
T PRK07940 74 RACRTVL-AGTHP-------DVRVVAPEGLSIGVDEVR------ELVTIA--ARRP---STGRWRIVVIEDADRLTERAA 134 (394)
T ss_pred HHHHHHh-cCCCC-------CEEEeccccccCCHHHHH------HHHHHH--HhCc---ccCCcEEEEEechhhcCHHHH
Confidence 0000000 00000 00000000 0011110 000000 0011 124566999999999999999
Q ss_pred HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHH
Q 017575 181 DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 181 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~ 248 (369)
+.|++.|++- .+..+++++|+|+ ..+.+++++||.. +.+.+|+ .+....++.
T Consensus 135 naLLk~LEep------------~~~~~fIL~a~~~--~~llpTIrSRc~~-i~f~~~~-~~~i~~~L~ 186 (394)
T PRK07940 135 NALLKAVEEP------------PPRTVWLLCAPSP--EDVLPTIRSRCRH-VALRTPS-VEAVAEVLV 186 (394)
T ss_pred HHHHHHhhcC------------CCCCeEEEEECCh--HHChHHHHhhCeE-EECCCCC-HHHHHHHHH
Confidence 9999999861 1234566667764 4589999999975 8898884 454545554
No 164
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.37 E-value=4.4e-11 Score=109.27 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=93.5
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC-----CCCCHhHHhhhccceeecC
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE-----GELRPQLLDRFGMHAQVGT 236 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~-----~~l~~al~~R~~~~i~~~~ 236 (369)
.++.++++||++.++......|..+.+-.. .....+.++++..|.- ..-..++.+|+..++++++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~----------~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQT----------DNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCccc----------CCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 345699999999999888877765543210 0112344555555421 1112467888877788888
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
.+. +....++..+ +... .......+++++++.|...+. | .+|.+..++..
T Consensus 192 l~~-~e~~~~l~~~------------------------l~~~-g~~~~~~~~~~~~~~i~~~s~--G--~p~~i~~l~~~ 241 (269)
T TIGR03015 192 LDR-EETREYIEHR------------------------LERA-GNRDAPVFSEGAFDAIHRFSR--G--IPRLINILCDR 241 (269)
T ss_pred CCH-HHHHHHHHHH------------------------HHHc-CCCCCCCcCHHHHHHHHHHcC--C--cccHHHHHHHH
Confidence 854 4444443322 1111 112235688999888888885 3 47999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
+...|..++...|+.++++.++...
T Consensus 242 ~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 242 LLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999998753
No 165
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.37 E-value=2.2e-11 Score=117.60 Aligned_cols=138 Identities=21% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCeEEEeCCCCCC----HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhcc-ceeecC
Q 017575 164 RGILYVDEVNLLD----DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGM-HAQVGT 236 (369)
Q Consensus 164 ~~vl~lDE~~~l~----~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~-~i~~~~ 236 (369)
+.+++|||++.+. .+....|+..++.. ...++.+|+++|+.. ..+++.+.+||.. .+.+++
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~------------~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~p 206 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEY------------PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPP 206 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhcc------------CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCC
Confidence 4589999998775 34445554444321 012567778877543 2367778888743 466665
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
+ +.++...|+..+. ........+++++++.+.+.+..... ..|.+..+++.
T Consensus 207 y-~~~e~~~il~~r~---------------------------~~~~~~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~~ 257 (394)
T PRK00411 207 Y-TADEIFDILKDRV---------------------------EEGFYPGVVDDEVLDLIADLTAREHG-DARVAIDLLRR 257 (394)
T ss_pred C-CHHHHHHHHHHHH---------------------------HhhcccCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 5 5666667755331 11122346799999999998875333 57999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
|...|..++++.|+.+|+..|+..+.
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999988763
No 166
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.36 E-value=2e-11 Score=110.76 Aligned_cols=233 Identities=20% Similarity=0.194 Sum_probs=153.0
Q ss_pred CCCCCccccChHHHHHHhh-----hhhccCCCCeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLL-----LNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~-----~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~ 104 (369)
....|..++++....+.+. ++.+ -..+||.|.+||||..+||+.....+... .+ ..++|.....+...+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Aml---DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pF--lalNCA~lPe~~aEs 273 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAML---DAPLLITGETGTGKDLLAKACHLASPRHSKPF--LALNCASLPEDAAES 273 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhcc---CCCeEEecCCCchHHHHHHHHhhcCcccCCCe--eEeecCCCchhHhHH
Confidence 4446888999876544443 3331 22399999999999999999887765332 11 111232222223333
Q ss_pred hhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
++++ . .....-.+|.+..+++|.+|+||+..+++..|..|+
T Consensus 274 ElFG-------------------------------~--------apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLL 314 (511)
T COG3283 274 ELFG-------------------------------H--------APGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLL 314 (511)
T ss_pred HHhc-------------------------------C--------CCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHH
Confidence 3332 1 111233578899999999999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCCh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPK 258 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~ 258 (369)
..+++|.+. |-|....+..++.+|+|+.-. .+++.+.|..|+.+ ..+.-|+.++-..+|.-.
T Consensus 315 RFL~DGtFR--RVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer~~di~pL--------- 382 (511)
T COG3283 315 RFLNDGTFR--RVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNV-LTLNLPPLRERPQDIMPL--------- 382 (511)
T ss_pred HHhcCCcee--ecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhhe-eeecCCccccCcccchHH---------
Confidence 999998654 336666677789999998732 25688999999987 666666555554444221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 259 EFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
.+.+-+++.. +.......++++...++..+....+ +|.+.+.+..|.+. .. ...++++|+.
T Consensus 383 ---------~e~Fv~q~s~-elg~p~pkl~~~~~~~L~~y~WpGN---VRqL~N~iyRA~s~--~E-g~~l~i~~i~ 443 (511)
T COG3283 383 ---------AELFVQQFSD-ELGVPRPKLAADLLTVLTRYAWPGN---VRQLKNAIYRALTL--LE-GYELRIEDIL 443 (511)
T ss_pred ---------HHHHHHHHHH-HhCCCCCccCHHHHHHHHHcCCCcc---HHHHHHHHHHHHHH--hc-cCccchhhcc
Confidence 1212222222 2234567899999999888877544 49999988887654 33 3446666664
No 167
>PRK08727 hypothetical protein; Validated
Probab=99.36 E-value=2e-11 Score=108.94 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=89.5
Q ss_pred CCCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC---CCHhHHhhh--ccceeec
Q 017575 163 NRGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE---LRPQLLDRF--GMHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~---l~~al~~R~--~~~i~~~ 235 (369)
+..+++|||++.+. +..+..++.+++... .....+|.|+|..+.. +.++|.+|| ...+.++
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~ 160 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP 160 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec
Confidence 35699999998764 456677777776421 1123366666644433 469999996 4458888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+....|+..+ .. .+.+.++++++.+|.+.+.. +.|.+.+++.
T Consensus 161 ~~-~~e~~~~iL~~~-------------------------a~----~~~l~l~~e~~~~La~~~~r----d~r~~l~~L~ 206 (233)
T PRK08727 161 VL-DDVARAAVLRER-------------------------AQ----RRGLALDEAAIDWLLTHGER----ELAGLVALLD 206 (233)
T ss_pred CC-CHHHHHHHHHHH-------------------------HH----HcCCCCCHHHHHHHHHhCCC----CHHHHHHHHH
Confidence 88 456666665532 11 12689999999999888752 6788888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 316 AAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
..-..+...++ .|+.+.++++++
T Consensus 207 ~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 207 RLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHh
Confidence 77765665555 689999888775
No 168
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.36 E-value=2.7e-11 Score=107.86 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=87.2
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC--CCCCCHhHHhhh--ccceeecCCC
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE--EGELRPQLLDRF--GMHAQVGTVR 238 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~--~~~l~~al~~R~--~~~i~~~~~~ 238 (369)
++++++|||++.++...+..|+.+++...- .....++.+++.. ...+.+.|.+|| ...+.+++++
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~-----------~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~ 158 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRA-----------HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLS 158 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHH-----------cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCC
Confidence 467999999999999999999998864110 1122233444322 223668899998 4578899885
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
.++ ...++. .+. ....+.++++++.+|.... .. +.|.+..++....
T Consensus 159 ~~~-~~~~l~-------------------------~~~----~~~~v~l~~~al~~L~~~~---~g-n~~~l~~~l~~l~ 204 (227)
T PRK08903 159 DAD-KIAALK-------------------------AAA----AERGLQLADEVPDYLLTHF---RR-DMPSLMALLDALD 204 (227)
T ss_pred HHH-HHHHHH-------------------------HHH----HHcCCCCCHHHHHHHHHhc---cC-CHHHHHHHHHHHH
Confidence 443 333322 111 1225889999999988832 22 5688888888877
Q ss_pred HHHHHcCCCCCCHHHHHHHHh
Q 017575 319 ALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 319 a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+.|...+ ..|+...+++++.
T Consensus 205 ~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 205 RYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHhC-CCCCHHHHHHHHh
Confidence 6666665 5699999998875
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.36 E-value=1.4e-11 Score=128.61 Aligned_cols=214 Identities=20% Similarity=0.209 Sum_probs=118.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|+++.++.+.-.+......+++|+||||||||++++.++..+.... .+.... ....+.-+....+. +
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~----vp~~l~--~~~i~~l~~~~l~a-g 249 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRD----VPDILE--DKLVITLDIGLLLA-G 249 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCC----CChhhc--CCeEEEeeHHHHhc-c
Confidence 4667899999888877766432334599999999999999999998874221 000000 00000000000000 0
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH--------HHHHHHHH
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD--------HLVDVLLD 185 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~--------~~~~~L~~ 185 (369)
.. ..+..++.+...+ ..+....+.|+||||++.+-. ...+.|..
T Consensus 250 ~~-------------~~ge~e~rl~~i~---------------~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp 301 (821)
T CHL00095 250 TK-------------YRGEFEERLKRIF---------------DEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP 301 (821)
T ss_pred CC-------------CccHHHHHHHHHH---------------HHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH
Confidence 00 0000000100000 001122467999999964422 24455555
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.+..| .+.+|+++++.++ ..++++.+||.. +.++.|+ .+....|+..-
T Consensus 302 ~l~rg---------------~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~-~~e~~aILr~l----------- 353 (821)
T CHL00095 302 ALARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPS-VEETIEILFGL----------- 353 (821)
T ss_pred HHhCC---------------CcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCC-HHHHHHHHHHH-----------
Confidence 55543 4668899987664 368999999986 8888884 44455665421
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHc
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~ 324 (369)
.........+.++++++..+..++.++-.+ -++.++++++.|.+...+.
T Consensus 354 --------------~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~ 404 (821)
T CHL00095 354 --------------RSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLI 404 (821)
T ss_pred --------------HHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhh
Confidence 111122224557777777777777644221 3566777777776665553
No 170
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.34 E-value=8.9e-12 Score=126.55 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=90.3
Q ss_pred CCCeEEEeCCCCCCH-----------H---HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--
Q 017575 163 NRGILYVDEVNLLDD-----------H---LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD-- 226 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~-----------~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~-- 226 (369)
.|+|+||||++.+.. . ..+.|+..|+. ......+.+|+|+|.. ..+++++++
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg-----------~~~~~~vivIaaTN~p-~~lD~Al~Rpg 311 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-----------FEGNEGIIVIAATNRP-DVLDPALLRPG 311 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-----------ccCCCCeeEEEecCCh-hhcCHHHhCCc
Confidence 578999999976522 1 33444444442 1113468899999954 469999997
Q ss_pred hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH-cCCC
Q 017575 227 RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE-LNVD 305 (369)
Q Consensus 227 R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~ 305 (369)
||+.++.++.| +.+.+..|+.... ....+.+++. +..+++. .|.
T Consensus 312 Rfdr~i~v~~P-d~~~R~~Il~~~~-------------------------------~~~~l~~~~d--~~~la~~t~G~- 356 (644)
T PRK10733 312 RFDRQVVVGLP-DVRGREQILKVHM-------------------------------RRVPLAPDID--AAIIARGTPGF- 356 (644)
T ss_pred ccceEEEcCCC-CHHHHHHHHHHHh-------------------------------hcCCCCCcCC--HHHHHhhCCCC-
Confidence 99999999999 4566667755321 0111211110 1223333 355
Q ss_pred CCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 306 GLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 306 s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
|.+.+.+++.-|...|...++..|+..|+.+|...+..
T Consensus 357 sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 357 SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 77899999999999999999999999999999887644
No 171
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=5.2e-11 Score=112.07 Aligned_cols=192 Identities=17% Similarity=0.243 Sum_probs=101.6
Q ss_pred CCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhh
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (369)
+.+..+..++|++.++..+..++......| ++|.||+|+|||++++.++..+.........+.. .. .++.... ...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~-~~-~~~~~c~-~c~ 93 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET-LA-DPDPASP-VWR 93 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc-cC-CCCCCCH-HHH
Confidence 445589999999999999998884333334 9999999999999999999888431100000000 00 0100000 111
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
.+..+..-+.. .+..+.+....+....+.+... ..-...+... -..+...|++|||++.++...++.|++.|+
T Consensus 94 ~i~~~~hPdl~-----~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~-~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 94 QIAQGAHPNLL-----HITRPFDEKTGKFKTAITVDEI-RRVGHFLSQT-SGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred HHHcCCCCCEE-----EeecccccccccccccCCHHHH-HHHHHHhhhc-cccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 11111000000 0000000000000001111100 0000000000 112345699999999999999999999998
Q ss_pred cCCceeeecceeeeecCc-eEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHH
Q 017575 189 SGWNTVEREGISISHPAR-FILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~-~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~ 248 (369)
+- +.. .+++.|.+| ..+.+.+.+||. .+.+.+++ .+....++.
T Consensus 167 Ep-------------p~~~~fiLit~~~--~~llptIrSRc~-~i~l~pl~-~~~~~~~L~ 210 (351)
T PRK09112 167 EP-------------PARALFILISHSS--GRLLPTIRSRCQ-PISLKPLD-DDELKKALS 210 (351)
T ss_pred cC-------------CCCceEEEEECCh--hhccHHHHhhcc-EEEecCCC-HHHHHHHHH
Confidence 61 222 344445444 457899999996 59999885 444545544
No 172
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.3e-11 Score=118.79 Aligned_cols=135 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred cCCCeEEEeCCCCCC-----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hh
Q 017575 162 ANRGILYVDEVNLLD-----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RF 228 (369)
Q Consensus 162 a~~~vl~lDE~~~l~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~ 228 (369)
..|+|+|+||++.+- ..+.+.|+..|+. + ....++.+|+++|.. ..+++|+++ ||
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~----~-------e~~~~v~vi~aTN~p-~~ld~a~lR~gRf 401 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG----I-------EKAEGVLVIAATNRP-DDLDPALLRPGRF 401 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC----C-------CccCceEEEecCCCc-cccCHhhcccCcc
Confidence 458999999994321 2466777777753 1 112357899999954 459999999 99
Q ss_pred ccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCc
Q 017575 229 GMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLR 308 (369)
Q Consensus 229 ~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R 308 (369)
+..+.++.| +.+.+..|+....... ......+-.+..+..... |. |..
T Consensus 402 d~~i~v~~p-d~~~r~~i~~~~~~~~----------------------------~~~~~~~~~~~~l~~~t~--~~-sga 449 (494)
T COG0464 402 DRLIYVPLP-DLEERLEIFKIHLRDK----------------------------KPPLAEDVDLEELAEITE--GY-SGA 449 (494)
T ss_pred ceEeecCCC-CHHHHHHHHHHHhccc----------------------------CCcchhhhhHHHHHHHhc--CC-CHH
Confidence 999999988 5677777766432110 000111223333444332 34 667
Q ss_pred hhHHHHHHHHHHHHHcC-CCCCCHHHHHHHHhH
Q 017575 309 GDIVSNRAAKALAALKG-RDKVSAEDIATVMPN 340 (369)
Q Consensus 309 ~~~~ll~~a~a~A~l~~-~~~v~~~~i~~a~~~ 340 (369)
.+..+++-|...|.... ...|+..|+..|+..
T Consensus 450 di~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 450 DIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 88899999999988887 678999999999987
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.32 E-value=1.3e-11 Score=129.41 Aligned_cols=214 Identities=18% Similarity=0.209 Sum_probs=120.8
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|++..++.+...+......+++|+||||||||++++.++..+..... ...+.. ...+.-++..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~--p~~l~~----~~~~~l~~~~----- 239 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDV--PESLKN----KRLLALDMGA----- 239 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCC--chhhcC----CeEEEeeHHH-----
Confidence 46779999988888777664223344999999999999999999988742110 000000 0000000000
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhh-cCCCeEEEeCCCCCCH--------HHHHHHH
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK-ANRGILYVDEVNLLDD--------HLVDVLL 184 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-a~~~vl~lDE~~~l~~--------~~~~~L~ 184 (369)
.+. + . ...|. ++..+.. .. ..+.. ..+.|+||||++.+.. +..+.|.
T Consensus 240 -l~a-------------~-~--~~~g~--~e~~l~~----~l-~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk 295 (852)
T TIGR03346 240 -LIA-------------G-A--KYRGE--FEERLKA----VL-NEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK 295 (852)
T ss_pred -Hhh-------------c-c--hhhhh--HHHHHHH----HH-HHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc
Confidence 000 0 0 00000 0000000 00 00111 1367999999986642 2334443
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHH
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEF 260 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~ 260 (369)
..+.. ..+.+|+++++.++ ..++++.+||.. |.++.|+ .+....|+...
T Consensus 296 ~~l~~---------------g~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~-~~~~~~iL~~~---------- 348 (852)
T TIGR03346 296 PALAR---------------GELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPT-VEDTISILRGL---------- 348 (852)
T ss_pred hhhhc---------------CceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCC-HHHHHHHHHHH----------
Confidence 33332 35778899887654 379999999986 8899995 56666665521
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHc
Q 017575 261 RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~ 324 (369)
.........+.++++++..+..++.++-.+ -+..++++++-|.+.+.+.
T Consensus 349 ---------------~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 349 ---------------KERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred ---------------HHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhh
Confidence 222223345777888888777777654321 2567788888877776654
No 174
>PRK15115 response regulator GlrR; Provisional
Probab=99.30 E-value=5e-11 Score=116.87 Aligned_cols=215 Identities=21% Similarity=0.218 Sum_probs=131.6
Q ss_pred eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCG 139 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (369)
++|.|++|+||+++|+.+....+... .+|. ..+|..++...... .++|
T Consensus 160 vli~Ge~GtGk~~lA~~ih~~s~r~~----~~f~--~i~c~~~~~~~~~~--------------------------~lfg 207 (444)
T PRK15115 160 VLINGQSGTGKEILAQAIHNASPRAS----KPFI--AINCGALPEQLLES--------------------------ELFG 207 (444)
T ss_pred EEEEcCCcchHHHHHHHHHHhcCCCC----CCeE--EEeCCCCCHHHHHH--------------------------HhcC
Confidence 99999999999999999998775321 1221 11111122211111 0111
Q ss_pred ccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--
Q 017575 140 TIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE-- 217 (369)
Q Consensus 140 ~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~-- 217 (369)
... .+ ..+......|.+..++++++||||++.+++..|..|+.+|+++.+... |.....+.++.+|+|++...
T Consensus 208 ~~~--~~-~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~--g~~~~~~~~~rii~~~~~~l~~ 282 (444)
T PRK15115 208 HAR--GA-FTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPL--GSNRDIDIDVRIISATHRDLPK 282 (444)
T ss_pred CCc--CC-CCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeC--CCCceeeeeEEEEEeCCCCHHH
Confidence 000 00 011222346777788999999999999999999999999998875322 44444556789999988432
Q ss_pred ----CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCC-cccCHHHH
Q 017575 218 ----GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPA-VQIDHDLK 292 (369)
Q Consensus 218 ----~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~~~~~ 292 (369)
+.+.+.|..|+.. +.+.-|+.++..++|...- ..+..++.. ..... ..++++++
T Consensus 283 ~~~~~~f~~~l~~~l~~-~~i~lPpLr~R~eDi~~l~------------------~~~l~~~~~--~~~~~~~~~~~~a~ 341 (444)
T PRK15115 283 AMARGEFREDLYYRLNV-VSLKIPALAERTEDIPLLA------------------NHLLRQAAE--RHKPFVRAFSTDAM 341 (444)
T ss_pred HHHcCCccHHHHHhhce-eeecCCChHhccccHHHHH------------------HHHHHHHHH--HhCCCCCCcCHHHH
Confidence 3477888999875 5555554555555553211 111112111 11222 35899999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 293 VKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 293 ~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
..|..+....++ |.+.+++..+... .....|+.+++...+
T Consensus 342 ~~L~~~~WpgNv---reL~~~i~~~~~~---~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 342 KRLMTASWPGNV---RQLVNVIEQCVAL---TSSPVISDALVEQAL 381 (444)
T ss_pred HHHHhCCCCChH---HHHHHHHHHHHHh---CCCCccChhhhhhhh
Confidence 999988875444 8888888776543 445578888876443
No 175
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2.2e-12 Score=112.60 Aligned_cols=146 Identities=22% Similarity=0.200 Sum_probs=88.9
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++..+|...+++.+++.+ ..|. +.|+||+|||||||++.++++..+..+. .+.+. .....+...+|
T Consensus 9 v~~~f~~~~vl~~i~L~v---~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-------~~p~~~~~~vF 78 (248)
T COG1116 9 VSKSFGGVEVLEDINLSV---EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-------TGPGPDIGYVF 78 (248)
T ss_pred eEEEeCceEEeccceeEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-------CCCCCCEEEEe
Confidence 444566677899999999 7888 9999999999999999999999887531 11111 12234667788
Q ss_pred hccccchhhhhccccccC-CC---CC--chHhhhc---ccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKINMVDL-PL---GA--TEDRVCG---TIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~-~~---~~--~~~~~~~---~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~- 172 (369)
|...+++|.++..++... .. .. ..+.... ..++......-...++.|+-++ .+|.++++|||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 888899998876543311 11 11 1111111 1111100011111233344332 28999999999
Q ss_pred CCCCHH----HHHHHHHHHhcC
Q 017575 173 NLLDDH----LVDVLLDSAASG 190 (369)
Q Consensus 173 ~~l~~~----~~~~L~~~l~~~ 190 (369)
..||.- .|+.|+++.++.
T Consensus 159 gALDalTR~~lq~~l~~lw~~~ 180 (248)
T COG1116 159 GALDALTREELQDELLRLWEET 180 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhh
Confidence 667764 556666666653
No 176
>PRK06620 hypothetical protein; Validated
Probab=99.30 E-value=2.6e-10 Score=100.22 Aligned_cols=125 Identities=13% Similarity=0.173 Sum_probs=79.2
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC-CCCCHhHHhhhc--cceeecCCCCH
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE-GELRPQLLDRFG--MHAQVGTVRDA 240 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~-~~l~~al~~R~~--~~i~~~~~~~~ 240 (369)
.++++|||++.+.....-.++..+.+. | ...+++++.+++ ..+ ++|++|+. ..+.+.+|+ .
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~e~-------g-------~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd-~ 149 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIINEK-------Q-------KYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPD-D 149 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHHhc-------C-------CEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCC-H
Confidence 459999999977433222232222221 1 233444444333 236 89999997 238888884 4
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
+....++... .. ...+.+++++.++|...+.. +.|.+..++....+.
T Consensus 150 ~~~~~~l~k~-------------------------~~----~~~l~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 150 ELIKILIFKH-------------------------FS----ISSVTISRQIIDFLLVNLPR----EYSKIIEILENINYF 196 (214)
T ss_pred HHHHHHHHHH-------------------------HH----HcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHHH
Confidence 5455554421 11 13588999999999988754 678888888887665
Q ss_pred HHHcCCCCCCHHHHHHHH
Q 017575 321 AALKGRDKVSAEDIATVM 338 (369)
Q Consensus 321 A~l~~~~~v~~~~i~~a~ 338 (369)
+...++ .|+.+.+++++
T Consensus 197 ~~~~~~-~it~~~~~~~l 213 (214)
T PRK06620 197 ALISKR-KITISLVKEVL 213 (214)
T ss_pred HHHcCC-CCCHHHHHHHh
Confidence 665554 58988888775
No 177
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.29 E-value=9e-13 Score=117.02 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=44.3
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++..||...+++.+++.+ ..|. +.|+||||||||||+|+|++++++..
T Consensus 6 ~~ls~~y~~~~il~~ls~~i---~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~ 56 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSI---PKGEITGILGPNGSGKSTLLKCLAGLLKPKS 56 (258)
T ss_pred EEEEEEECCeeEEecceEEe---cCCcEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 35667788888999999999 7787 99999999999999999999999875
No 178
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6e-11 Score=110.04 Aligned_cols=208 Identities=20% Similarity=0.281 Sum_probs=127.1
Q ss_pred CCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHh
Q 017575 57 IGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDR 136 (369)
Q Consensus 57 ~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (369)
..+++|+||+|+|||.|++.||+.+ ..||... +|-.+.+ .+. .+...++
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l-------dVPfaIc--DcTtLTQ-------AGY---------------VGeDVEs 274 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL-------DVPFAIC--DCTTLTQ-------AGY---------------VGEDVES 274 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh-------CCCeEEe--cccchhh-------ccc---------------ccccHHH
Confidence 3459999999999999999999999 3554321 1111111 000 0111111
Q ss_pred hhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH--------------HHHHHHHHHHhcCCceeeecce---
Q 017575 137 VCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD--------------HLVDVLLDSAASGWNTVEREGI--- 199 (369)
Q Consensus 137 ~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~--------------~~~~~L~~~l~~~~~~~~~~~~--- 199 (369)
+.. +.+. ...+-+.+|..+|+||||++++.. .+|+.|+++++...+.+++.+.
T Consensus 275 vi~-----KLl~-----~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~ 344 (564)
T KOG0745|consen 275 VIQ-----KLLQ-----EAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRK 344 (564)
T ss_pred HHH-----HHHH-----HccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCC
Confidence 110 0001 112335667889999999976552 3899999999977666654333
Q ss_pred ----eeeecC-ceEEEeecCCCC-------------------------------------------------------CC
Q 017575 200 ----SISHPA-RFILIGSGNPEE-------------------------------------------------------GE 219 (369)
Q Consensus 200 ----~~~~~~-~~~li~t~n~~~-------------------------------------------------------~~ 219 (369)
++..+. ++.||+..---. +.
T Consensus 345 ~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfG 424 (564)
T KOG0745|consen 345 PRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFG 424 (564)
T ss_pred CCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhc
Confidence 355553 556655411000 12
Q ss_pred CCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhh-CCCcccCHHHHHHHHHH
Q 017575 220 LRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSS-LPAVQIDHDLKVKISKV 298 (369)
Q Consensus 220 l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~l~~~ 298 (369)
+-|+|.-||.+.+.+... +++....|+..- ...+-.++...... .-+..+++++++.|+++
T Consensus 425 mIPEfVGRfPVlVplh~L-~~~~Lv~VLtEP-----------------knaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~ 486 (564)
T KOG0745|consen 425 MIPEFVGRFPVLVPLHSL-DEDQLVRVLTEP-----------------KNALGKQYKKLFGMDNVELHFTEKALEAIAQL 486 (564)
T ss_pred CcHHHhcccceEeecccc-CHHHHHHHHhcc-----------------hhhHHHHHHHHhccCCeeEEecHHHHHHHHHH
Confidence 567788888887777776 566666776621 11123333333332 23578899999999999
Q ss_pred HHHcCCCCCchhHHHHHHHHHHHHHc
Q 017575 299 CAELNVDGLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 299 ~~~~~~~s~R~~~~ll~~a~a~A~l~ 324 (369)
+-+-+. +.|++..++..+-.-|.+.
T Consensus 487 Al~r~T-GARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 487 ALKRKT-GARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHhhcc-chHHHHHHHHHHHhhhccc
Confidence 987666 6799999998887777664
No 179
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.28 E-value=1.2e-10 Score=114.09 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=99.9
Q ss_pred CCCeEEEeCCCCCCH--HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC---CCHhHHhhhc--cceeec
Q 017575 163 NRGILYVDEVNLLDD--HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE---LRPQLLDRFG--MHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~--~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~---l~~al~~R~~--~~i~~~ 235 (369)
+.++|+|||++.+.. ..+..|+.+++... . .+ .. ++.|+|..+.. +.+.+.+||. ..+.+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~---~-~~-------~~-iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~ 278 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALH---E-AG-------KQ-IVLTSDRPPKELPGLEERLRSRFEWGLTVDIE 278 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---H-CC-------Cc-EEEECCCCHHHHHHHHHHHHhHhcCCeeEEec
Confidence 467999999987643 45677777776421 0 01 12 33444433322 6789999995 468888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+.+.+|+..+. . ...+.++++++++|++.+.. +.|.+..++.
T Consensus 279 ~p-d~~~r~~il~~~~-------------------------~----~~~~~l~~e~l~~ia~~~~~----~~R~l~~~l~ 324 (450)
T PRK00149 279 PP-DLETRIAILKKKA-------------------------E----EEGIDLPDEVLEFIAKNITS----NVRELEGALN 324 (450)
T ss_pred CC-CHHHHHHHHHHHH-------------------------H----HcCCCCCHHHHHHHHcCcCC----CHHHHHHHHH
Confidence 88 5677777766431 1 13678999999888877653 6799888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCCCCCCChhHHHHHHH
Q 017575 316 AAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDPLESIDSGLLIIEKF 364 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~~~~~~~~~~~~~~ 364 (369)
...+.|...+++ |+.+.+++++...+... ...++.+.+++.|.
T Consensus 325 ~l~~~~~~~~~~-it~~~~~~~l~~~~~~~-----~~~~~~~~i~~~v~ 367 (450)
T PRK00149 325 RLIAYASLTGKP-ITLELAKEALKDLLAAQ-----KKKITIENIQKVVA 367 (450)
T ss_pred HHHHHHHhhCCC-CCHHHHHHHHHHhhccC-----CCCCCHHHHHHHHH
Confidence 888888887765 89999999998764211 12355555554443
No 180
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.1e-11 Score=109.15 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=84.3
Q ss_pred eEEEeCCCCCCH---------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhcc
Q 017575 166 ILYVDEVNLLDD---------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGM 230 (369)
Q Consensus 166 vl~lDE~~~l~~---------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~ 230 (369)
.++|||++.+.. .+.++|+..|+. +. ...++.+++|+|.. ..++-|+.||-++
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr----lK-------~~~NvliL~TSNl~-~siD~AfVDRADi 320 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR----LK-------RYPNVLILATSNLT-DSIDVAFVDRADI 320 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH----hc-------cCCCEEEEeccchH-HHHHHHhhhHhhh
Confidence 678899943321 267888888875 21 22478889999954 4599999999999
Q ss_pred ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCccc---CHHHHH-HHHHHHHHcCCCC
Q 017575 231 HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQI---DHDLKV-KISKVCAELNVDG 306 (369)
Q Consensus 231 ~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i---~~~~~~-~l~~~~~~~~~~s 306 (369)
+..+.+| ..+....|++... .+++...|......-..+.. ..++.. .+.++. .-|+ |
T Consensus 321 ~~yVG~P-t~~ai~~Ilksci----------------eEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~-~~gL-S 381 (423)
T KOG0744|consen 321 VFYVGPP-TAEAIYEILKSCI----------------EELISSGIILFHQRSTGVKEFIKYQKALRNILIELS-TVGL-S 381 (423)
T ss_pred eeecCCc-cHHHHHHHHHHHH----------------HHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh-hcCC-c
Confidence 9999999 5677778877532 11111111111110000001 111111 122222 2366 7
Q ss_pred CchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 307 LRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 307 ~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.|.+..+=-+|. |.+-....|+..++-.++-.....
T Consensus 382 GRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~~k 417 (423)
T KOG0744|consen 382 GRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAAKK 417 (423)
T ss_pred cchHhhhhHHHH--HhccCCCccChHHHHHHHHHHHHH
Confidence 788877666543 444445578888877766554443
No 181
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.1e-11 Score=104.80 Aligned_cols=144 Identities=18% Similarity=0.256 Sum_probs=97.4
Q ss_pred CCCeEEEeCCCCCC-----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVNLLD-----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~~l~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
.|.|+|+||++... .++|..++++|++- . | +....++-+|.++|..+ .+++||.+ |++
T Consensus 278 apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl----d--G--FdsrgDvKvimATnrie-~LDPaLiRPGrID 348 (440)
T KOG0726|consen 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL----D--G--FDSRGDVKVIMATNRIE-TLDPALIRPGRID 348 (440)
T ss_pred CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc----c--C--ccccCCeEEEEeccccc-ccCHhhcCCCccc
Confidence 58899999994332 35888999998751 1 2 22345788999999655 48999997 899
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHH-HHHHcCCCCCc
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISK-VCAELNVDGLR 308 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~s~R 308 (369)
..|.++.| +.....+|...... ...+..++- +.+ +..+..+ |.-
T Consensus 349 rKIef~~p-De~TkkkIf~IHTs-------------------------------~Mtl~~dVn--le~li~~kddl-SGA 393 (440)
T KOG0726|consen 349 RKIEFPLP-DEKTKKKIFQIHTS-------------------------------RMTLAEDVN--LEELIMTKDDL-SGA 393 (440)
T ss_pred cccccCCC-chhhhceeEEEeec-------------------------------ccchhcccc--HHHHhhccccc-ccc
Confidence 99999988 45555555442111 011111111 111 1122233 556
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCC
Q 017575 309 GDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRKDP 350 (369)
Q Consensus 309 ~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~ 350 (369)
.+..++.-|..+|....|..|+.+|+.++...|+..+-...|
T Consensus 394 dIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g~~ 435 (440)
T KOG0726|consen 394 DIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEGVP 435 (440)
T ss_pred cHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccCCc
Confidence 788889999999999989999999999999999988743333
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=5.6e-11 Score=124.19 Aligned_cols=211 Identities=18% Similarity=0.235 Sum_probs=113.3
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|++..++.+.-.+......+++|+||||||||++++.++..+..... ...+.. .
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~v--p~~l~~----~-------------- 235 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV--PEGLKG----R-------------- 235 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCC--chhhCC----C--------------
Confidence 57789999988777776553223334999999999999999999998742110 000000 0
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchh---hh-cCCCeEEEeCCCCCCHH--------HH
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLL---AK-ANRGILYVDEVNLLDDH--------LV 180 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~---~~-a~~~vl~lDE~~~l~~~--------~~ 180 (369)
.++.+..... +.+. .. .|... .....+ .. ..+.|+||||++.+... ..
T Consensus 236 ----------~~~~l~l~~l---~ag~-~~-----~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~ 296 (857)
T PRK10865 236 ----------RVLALDMGAL---VAGA-KY-----RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG 296 (857)
T ss_pred ----------EEEEEehhhh---hhcc-ch-----hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH
Confidence 0000000000 0000 00 00000 000111 11 24679999999877532 45
Q ss_pred HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCC
Q 017575 181 DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKN 256 (369)
Q Consensus 181 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~ 256 (369)
+.|...+.+ ..+.+|+++++.++ ..++++.+||.. |.+..|+ .+....|+.....-
T Consensus 297 ~~lkp~l~~---------------g~l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~-~~~~~~iL~~l~~~--- 356 (857)
T PRK10865 297 NMLKPALAR---------------GELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPS-VEDTIAILRGLKER--- 356 (857)
T ss_pred HHhcchhhc---------------CCCeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCC-HHHHHHHHHHHhhh---
Confidence 555555544 25678999997764 479999999985 8888884 56566666532100
Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCC
Q 017575 257 PKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNV 304 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 304 (369)
-+..+++....+.+...+.-.......-.+++.+...+...+....+
T Consensus 357 -~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl 403 (857)
T PRK10865 357 -YELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRM 403 (857)
T ss_pred -hccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccccc
Confidence 00011112122222222222233344567777787777777765544
No 183
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.26 E-value=7.2e-11 Score=116.39 Aligned_cols=239 Identities=19% Similarity=0.239 Sum_probs=138.4
Q ss_pred ccccChHHHHHHhhhhhccCCCC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
..++|.......+.-.+...... .+++.|++||||+++++++........ .+|. ..+|..++.+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~----~~~~--~~~c~~~~~~~~~~---- 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRAN----GPFI--ALNMAAIPKDLIES---- 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCC----CCeE--EEeCCCCCHHHHHH----
Confidence 34677655433332222110222 399999999999999999998775321 1221 11122222221111
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
.++|.. ...+ .+......|.+..++++++||||++.+++..|..|+++++++.+.
T Consensus 204 ----------------------~lfg~~--~~~~-~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~ 258 (463)
T TIGR01818 204 ----------------------ELFGHE--KGAF-TGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFY 258 (463)
T ss_pred ----------------------HhcCCC--CCCC-CCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEE
Confidence 011100 0000 111122357777788999999999999999999999999987654
Q ss_pred eeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHH
Q 017575 194 VEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKA 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 266 (369)
.. |.....+.++.+|++++... +.+.+.|+.|+.. .+.+|+...+ ..+|...-
T Consensus 259 ~~--~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R--~~Di~~l~---------------- 318 (463)
T TIGR01818 259 RV--GGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRER--REDIPRLA---------------- 318 (463)
T ss_pred EC--CCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccc--hhhHHHHH----------------
Confidence 32 33334455788899988542 3477899999864 5666665433 33342211
Q ss_pred HHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 267 EQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 267 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
.....++.. ........++++++..|..+....| .|.+.+++..+...+ ....|+.+|+...+
T Consensus 319 --~~~l~~~~~-~~~~~~~~~~~~a~~~L~~~~wpgN---vreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 319 --RHFLALAAR-ELDVEPKLLDPEALERLKQLRWPGN---VRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred --HHHHHHHHH-HhCCCCCCcCHHHHHHHHhCCCCCh---HHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 111112211 1111235789999999998865433 488888777765443 34578888876554
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=6.7e-11 Score=96.94 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=87.1
Q ss_pred ChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhh
Q 017575 40 GQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSIT 119 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
|++..+..+...+.....++++|+||||+|||++++.++..+.... .++... .+.......
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~----~~v~~~--~~~~~~~~~------------- 62 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG----APFLYL--NASDLLEGL------------- 62 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCC----CCeEEE--ehhhhhhhh-------------
Confidence 5667777777776432344599999999999999999999874111 000000 000000000
Q ss_pred hhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecce
Q 017575 120 FSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGI 199 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~ 199 (369)
........ .............++.++++||++.+++.....+.+.++......
T Consensus 63 ----------------~~~~~~~~------~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~----- 115 (151)
T cd00009 63 ----------------VVAELFGH------FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR----- 115 (151)
T ss_pred ----------------HHHHHhhh------hhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----
Confidence 00000000 000001111223467899999999998888899999888642211
Q ss_pred eeeecCceEEEeecCCCCC-CCCHhHHhhhccceeec
Q 017575 200 SISHPARFILIGSGNPEEG-ELRPQLLDRFGMHAQVG 235 (369)
Q Consensus 200 ~~~~~~~~~li~t~n~~~~-~l~~al~~R~~~~i~~~ 235 (369)
..+..+.+|+++|+... .+.+.+.+||+.++.++
T Consensus 116 --~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 116 --IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 12356788888886553 57889999997666654
No 185
>PRK09087 hypothetical protein; Validated
Probab=99.24 E-value=4e-10 Score=99.91 Aligned_cols=130 Identities=13% Similarity=0.086 Sum_probs=85.5
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC-CC-CCHhHHhhhc--cceeecCCCCH
Q 017575 165 GILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE-GE-LRPQLLDRFG--MHAQVGTVRDA 240 (369)
Q Consensus 165 ~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~-~~-l~~al~~R~~--~~i~~~~~~~~ 240 (369)
+++++|+++.++ ..+..|+.+++.. .. .....+++++.+.+ .. ..++|.+||. ..+.+.+| +.
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~----~~-------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~p-d~ 155 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSV----RQ-------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEP-DD 155 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHH----Hh-------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCC-CH
Confidence 589999998764 3356677766531 00 01223333333222 22 3688999993 45889888 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
+.+..++++.. + ...+.++++++.+|...+.. +.|.+..++......
T Consensus 156 e~~~~iL~~~~-------------------------~----~~~~~l~~ev~~~La~~~~r----~~~~l~~~l~~L~~~ 202 (226)
T PRK09087 156 ALLSQVIFKLF-------------------------A----DRQLYVDPHVVYYLVSRMER----SLFAAQTIVDRLDRL 202 (226)
T ss_pred HHHHHHHHHHH-------------------------H----HcCCCCCHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 66666755331 1 13688999999999987763 678888777777677
Q ss_pred HHHcCCCCCCHHHHHHHHhHH
Q 017575 321 AALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 321 A~l~~~~~v~~~~i~~a~~~v 341 (369)
+...++. ++...+++++..+
T Consensus 203 ~~~~~~~-it~~~~~~~l~~~ 222 (226)
T PRK09087 203 ALERKSR-ITRALAAEVLNEM 222 (226)
T ss_pred HHHhCCC-CCHHHHHHHHHhh
Confidence 7776655 8999999988754
No 186
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.24 E-value=2.2e-10 Score=112.24 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=131.2
Q ss_pred eeEEecCCCCChhHHHHHHHhccCcceeecCCCCC---CCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchH
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN---SDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATED 135 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (369)
.+++.|.+|+||+++++++....+... .+|. +.......+.+.+++.
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~----~~~i~~~c~~~~~~~~~~~lfg~-------------------------- 213 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSE----KPLVTLNCAALNESLLESELFGH-------------------------- 213 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCC----CCeeeeeCCCCCHHHHHHHhcCC--------------------------
Confidence 399999999999999999988765221 1221 1111111122222111
Q ss_pred hhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCC
Q 017575 136 RVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNP 215 (369)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~ 215 (369)
.. .. ..+......|.+..+++|++||||++.+++..|..|+..++++.+... |.....+.++.+|++++.
T Consensus 214 -----~~--~~-~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~t~~ 283 (441)
T PRK10365 214 -----EK--GA-FTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRV--GSNQTISVDVRLIAATHR 283 (441)
T ss_pred -----CC--CC-cCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeC--CCCceeeeceEEEEeCCC
Confidence 00 00 011122346778889999999999999999999999999998875432 444455667888988875
Q ss_pred CC------CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCH
Q 017575 216 EE------GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDH 289 (369)
Q Consensus 216 ~~------~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~ 289 (369)
.. +.+.+.|..|+.. +.+.-|+.++...+|...- ..+..++... .......+++
T Consensus 284 ~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~~Di~~l~------------------~~~l~~~~~~-~~~~~~~~~~ 343 (441)
T PRK10365 284 DLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRREDIPLLA------------------GHFLQRFAER-NRKAVKGFTP 343 (441)
T ss_pred CHHHHHHcCCchHHHHHHhcc-ceecCCChhhcchhHHHHH------------------HHHHHHHHHH-hCCCCCCcCH
Confidence 42 3477888899865 5554444555555553321 1111222111 1112346899
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 290 DLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 290 ~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
+++..|..+....++ |.+.++++.+.. ......|+.+|+...+
T Consensus 344 ~a~~~L~~~~wpgN~---reL~~~~~~~~~---~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 344 QAMDLLIHYDWPGNI---RELENAVERAVV---LLTGEYISERELPLAI 386 (441)
T ss_pred HHHHHHHhCCCCCHH---HHHHHHHHHHHH---hCCCCccchHhCchhh
Confidence 999998888764444 888777776544 3445568888876543
No 187
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.22 E-value=4.5e-10 Score=108.67 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=89.6
Q ss_pred CCeEEEeCCCCCCH--HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhc--cceeecC
Q 017575 164 RGILYVDEVNLLDD--HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFG--MHAQVGT 236 (369)
Q Consensus 164 ~~vl~lDE~~~l~~--~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~--~~i~~~~ 236 (369)
.++|+|||++.+.. ..+..|+.+++... . ....+|.|+|-.+. .+.+.+.+||. ..+.+.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~---~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~ 267 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALH---E---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEP 267 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHH---H---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCC
Confidence 56999999987643 45677777776421 0 11123445442222 26688999995 4588888
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
| +.+.+..|+..+. . ...+.++++++.+|++.... +.|.+..++..
T Consensus 268 p-d~~~r~~il~~~~-------------------------~----~~~~~l~~e~l~~ia~~~~~----~~r~l~~~l~~ 313 (405)
T TIGR00362 268 P-DLETRLAILQKKA-------------------------E----EEGLELPDEVLEFIAKNIRS----NVRELEGALNR 313 (405)
T ss_pred C-CHHHHHHHHHHHH-------------------------H----HcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHH
Confidence 8 5677777766331 1 13678999999988876543 66888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
..+.|...++. |+.+.+++++...+
T Consensus 314 l~~~a~~~~~~-it~~~~~~~L~~~~ 338 (405)
T TIGR00362 314 LLAYASLTGKP-ITLELAKEALKDLL 338 (405)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHhc
Confidence 88888777655 88888888887654
No 188
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.22 E-value=7.7e-12 Score=108.76 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=99.3
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCC-CCCCCcchhhhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN-SDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 111 (369)
+++..||...+++.+++.+ ..|. ++|+||+||||||++|.|-+++.+.++.....-. ....++..++..+.+++|
T Consensus 6 nvsk~y~~~~av~~v~l~I---~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTI---EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeehhcCCceeeeeeeEEe---cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 4556678888999999999 7888 9999999999999999999999987632222211 223345677888999999
Q ss_pred ccccchhhhhccccccCCCCC-c--------hHhhhcccchh---------HHhhhccccccc-chhhhcCCCeEEEeCC
Q 017575 112 KGEELSITFSKINMVDLPLGA-T--------EDRVCGTIDIE---------KALTEGVKAFEP-GLLAKANRGILYVDEV 172 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~---------~~~~~g~~~~~~-g~~~~a~~~vl~lDE~ 172 (369)
.-.++++.++..++..+|--. + ..++....++. ..++||+..... ..-.-++|.++++|||
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 888888888766555444211 1 11222222111 334555543221 1112258999999999
Q ss_pred -CCCCHHHHHHHHHHH
Q 017575 173 -NLLDDHLVDVLLDSA 187 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l 187 (369)
..+||-....|-+.+
T Consensus 163 FgALDpI~R~~lQ~e~ 178 (309)
T COG1125 163 FGALDPITRKQLQEEI 178 (309)
T ss_pred ccccChhhHHHHHHHH
Confidence 678887655554444
No 189
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.2e-10 Score=108.42 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=102.5
Q ss_pred CCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCC--CCCCcchhhhhh
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNS--DPEDPEAMGIEV 106 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~--~~~~~~~~~~~~ 106 (369)
+.+..+.+++||+.++..+.-++....-.| +||.||+|+||+++|..+++.+--........+.. .....+.... .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~-~ 91 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP-V 91 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh-H
Confidence 344478999999999999988885333345 99999999999999999998883211000000000 0000000000 0
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
...+..+..-+...+ ..............+.+... ..-....... ...+.+.|++|||++.++...++.|++.
T Consensus 92 c~~i~~~~HPDl~~i-----~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~-~~~~~~kVviIDead~m~~~aanaLLK~ 164 (365)
T PRK07471 92 ARRIAAGAHGGLLTL-----ERSWNEKGKRLRTVITVDEV-RELISFFGLT-AAEGGWRVVIVDTADEMNANAANALLKV 164 (365)
T ss_pred HHHHHccCCCCeEEE-----ecccccccccccccccHHHH-HHHHHHhCcC-cccCCCEEEEEechHhcCHHHHHHHHHH
Confidence 000110100000000 00000000000011111100 0000000000 1224567999999999999999999999
Q ss_pred HhcCCceeeecceeeeecCc-eEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 187 AASGWNTVEREGISISHPAR-FILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~-~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
+++- +.. ++++.|.++ ..+.+.+.+||.. +.+.+++ .+....++..
T Consensus 165 LEep-------------p~~~~~IL~t~~~--~~llpti~SRc~~-i~l~~l~-~~~i~~~L~~ 211 (365)
T PRK07471 165 LEEP-------------PARSLFLLVSHAP--ARLLPTIRSRCRK-LRLRPLA-PEDVIDALAA 211 (365)
T ss_pred HhcC-------------CCCeEEEEEECCc--hhchHHhhccceE-EECCCCC-HHHHHHHHHH
Confidence 9871 233 344444444 3478899999976 9999885 4545555554
No 190
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=5.7e-10 Score=108.55 Aligned_cols=133 Identities=15% Similarity=0.201 Sum_probs=89.7
Q ss_pred CCCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhc--cceeec
Q 017575 163 NRGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFG--MHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~--~~i~~~ 235 (369)
++++++|||++.+. ...+..|+.+++... ...-.+|.+++-.+. .+.+.+.+||. ..+.+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~------------~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~ 261 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH------------DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH------------HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC
Confidence 47799999997653 345667777765411 011123444432222 25678899985 347788
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+.+..|++.. .....+.++++++.+|++.... +.|.+..++.
T Consensus 262 ~p-d~e~r~~IL~~~-----------------------------~~~~~~~l~~ev~~~Ia~~~~~----~~R~L~g~l~ 307 (440)
T PRK14088 262 PP-DEETRKKIARKM-----------------------------LEIEHGELPEEVLNFVAENVDD----NLRRLRGAII 307 (440)
T ss_pred CC-CHHHHHHHHHHH-----------------------------HHhcCCCCCHHHHHHHHhcccc----CHHHHHHHHH
Confidence 88 567777776532 1123578999999998887753 5688888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 316 AAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
...+.+.+.++. ++.+.+++++...+
T Consensus 308 ~l~~~~~~~~~~-it~~~a~~~L~~~~ 333 (440)
T PRK14088 308 KLLVYKETTGEE-VDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHh
Confidence 888888887755 88999988888764
No 191
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.20 E-value=2.2e-11 Score=101.40 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=95.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee---ecCCCCCCCCC-Ccchhhhhhhhhhhccccc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV---VVGDPYNSDPE-DPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 116 (369)
.++++.+++.+ ..|. +.|+||+|+||||++|+|.....+..+ +.+.++..+.. ....++..+..+||...++
T Consensus 15 ~~aL~~vs~~i---~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHI---PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEee---cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56899999999 7888 999999999999999999999988753 22334444333 2345677888889988888
Q ss_pred hhhhhccccc------cCCCCCchHhhhcccchh----------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCHH
Q 017575 117 SITFSKINMV------DLPLGATEDRVCGTIDIE----------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDDH 178 (369)
Q Consensus 117 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~~ 178 (369)
+..+++.+.. ..+......+....++.. ..+++|+.+.. -+.-...+|.+++.||| .++||+
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 8877664322 111111122222222221 23344443311 11111127999999999 799999
Q ss_pred HHHHHHHHHhc
Q 017575 179 LVDVLLDSAAS 189 (369)
Q Consensus 179 ~~~~L~~~l~~ 189 (369)
.-..++.++++
T Consensus 172 ~s~~im~lfee 182 (223)
T COG2884 172 LSWEIMRLFEE 182 (223)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 192
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=9.7e-10 Score=107.08 Aligned_cols=135 Identities=12% Similarity=0.164 Sum_probs=94.5
Q ss_pred CCCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhc--cceeec
Q 017575 163 NRGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFG--MHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~--~~i~~~ 235 (369)
+.++|+|||++.+. ...+..|+.+++... ...-.+|.|+|-.+. .+.+.|.+||. +.+.+.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~------------~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI------------ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHH------------HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccC
Confidence 46799999998776 667888888887521 111135666663332 26789999994 567788
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+.+..|+..+. +.. .....++++++.+|++.+.. ++|.+..++.
T Consensus 274 ~p-d~e~r~~iL~~~~-------------------------~~~--gl~~~l~~evl~~Ia~~~~g----d~R~L~gaL~ 321 (450)
T PRK14087 274 KL-DNKTATAIIKKEI-------------------------KNQ--NIKQEVTEEAINFISNYYSD----DVRKIKGSVS 321 (450)
T ss_pred Cc-CHHHHHHHHHHHH-------------------------Hhc--CCCCCCCHHHHHHHHHccCC----CHHHHHHHHH
Confidence 88 5677777766431 111 11247999999999988763 6799999988
Q ss_pred HHHHHHHHcCC-CCCCHHHHHHHHhHH
Q 017575 316 AAKALAALKGR-DKVSAEDIATVMPNC 341 (369)
Q Consensus 316 ~a~a~A~l~~~-~~v~~~~i~~a~~~v 341 (369)
.+...|..... ..|+.+.+++++...
T Consensus 322 ~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 322 RLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 88777777632 469999999988764
No 193
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.19 E-value=1.7e-10 Score=119.50 Aligned_cols=160 Identities=23% Similarity=0.314 Sum_probs=95.6
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.+..+|+++.|.+.++..+...+.. ....+++|+||||||||++++++++.+... +..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-------~i~i- 243 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-------FISI- 243 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-------EEEE-
Confidence 3556889999988876666443310 012349999999999999999999987421 1000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
+.. ++.. ...+.....+...+ . ......|.++||||++.+.
T Consensus 244 -~~~----~i~~-------------------~~~g~~~~~l~~lf------~---------~a~~~~p~il~iDEid~l~ 284 (733)
T TIGR01243 244 -NGP----EIMS-------------------KYYGESEERLREIF------K---------EAEENAPSIIFIDEIDAIA 284 (733)
T ss_pred -ecH----HHhc-------------------ccccHHHHHHHHHH------H---------HHHhcCCcEEEeehhhhhc
Confidence 000 0000 00000000000000 0 0112246899999985542
Q ss_pred -----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHH
Q 017575 177 -----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELR 243 (369)
Q Consensus 177 -----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~ 243 (369)
...++.|+..|+.- . ....+.+|+++|.. ..+++++.+ ||+..+.++.| +.+.+
T Consensus 285 ~~r~~~~~~~~~~~~~~Ll~~ld~l----~-------~~~~vivI~atn~~-~~ld~al~r~gRfd~~i~i~~P-~~~~R 351 (733)
T TIGR01243 285 PKREEVTGEVEKRVVAQLLTLMDGL----K-------GRGRVIVIGATNRP-DALDPALRRPGRFDREIVIRVP-DKRAR 351 (733)
T ss_pred ccccCCcchHHHHHHHHHHHHhhcc----c-------cCCCEEEEeecCCh-hhcCHHHhCchhccEEEEeCCc-CHHHH
Confidence 34677888888641 1 12357788899954 458999987 89988999888 56667
Q ss_pred HHHHHH
Q 017575 244 VKIVEE 249 (369)
Q Consensus 244 ~~il~~ 249 (369)
..|+..
T Consensus 352 ~~Il~~ 357 (733)
T TIGR01243 352 KEILKV 357 (733)
T ss_pred HHHHHH
Confidence 777663
No 194
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.19 E-value=5.5e-11 Score=96.15 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=47.1
Q ss_pred CCeEEEeCCCCCCHHH-----------HHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHH-hhhccc
Q 017575 164 RGILYVDEVNLLDDHL-----------VDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLL-DRFGMH 231 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~-----------~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~-~R~~~~ 231 (369)
+.+++|||++.+-+.. .+.|+..++...- ....+.+|+|+|. ...+++++. +||+.+
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~-~~~i~~~l~~~rf~~~ 127 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNS-PDKIDPALLRSRFDRR 127 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESS-GGGSCHHHHSTTSEEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeeccccccc----------ccccceeEEeeCC-hhhCCHhHHhCCCcEE
Confidence 7899999998777665 7888888876321 1346889999996 556999999 999988
Q ss_pred eeec
Q 017575 232 AQVG 235 (369)
Q Consensus 232 i~~~ 235 (369)
+.++
T Consensus 128 i~~~ 131 (132)
T PF00004_consen 128 IEFP 131 (132)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 8765
No 195
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=2.7e-11 Score=102.50 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=43.8
Q ss_pred chhhhcCCCeEEEeCCCCCCH-----------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC
Q 017575 157 GLLAKANRGILYVDEVNLLDD-----------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE 216 (369)
Q Consensus 157 g~~~~a~~~vl~lDE~~~l~~-----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~ 216 (369)
|.....+.+|+||||++++.+ .+++.|+++|+++.++-. .+.++.. .++.+|+|+|-.
T Consensus 62 ~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 62 GYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDT-SNIIFIMTSNFG 130 (171)
T ss_dssp CHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEG-TTEEEEEEESSS
T ss_pred ceeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEe-CCceEEEecccc
Confidence 334444556999999999999 999999999999877643 2333333 478889999953
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.19 E-value=3.5e-11 Score=111.02 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=51.3
Q ss_pred cCCCeEEEeCCCCCCHH------------HHHHHHHHHhcCC-ceeeecce--eeeecCceEEEeecCCCCCCCCHhHHh
Q 017575 162 ANRGILYVDEVNLLDDH------------LVDVLLDSAASGW-NTVEREGI--SISHPARFILIGSGNPEEGELRPQLLD 226 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~------------~~~~L~~~l~~~~-~~~~~~~~--~~~~~~~~~li~t~n~~~~~l~~al~~ 226 (369)
..|+||||||++.+-+. +...|+.+|+.-. +.+. |. .......+.+|+|+|. +..+++||++
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~--G~w~~~~~~~~V~VIaTTNr-pd~LDpALlR 287 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLG--GDWREKEEIPRVPIIVTGND-FSTLYAPLIR 287 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccc--ccccccccCCCceEEEeCCC-cccCCHhHcC
Confidence 36899999999533221 1245666665311 1111 11 1123456888999994 4569999999
Q ss_pred --hhccceeecCCCCHHHHHHHHHH
Q 017575 227 --RFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 227 --R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
||+..+ ..| +.+.+..|++.
T Consensus 288 pGRfDk~i--~lP-d~e~R~eIL~~ 309 (413)
T PLN00020 288 DGRMEKFY--WAP-TREDRIGVVHG 309 (413)
T ss_pred CCCCCcee--CCC-CHHHHHHHHHH
Confidence 999754 345 67888888763
No 197
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=5.5e-10 Score=108.48 Aligned_cols=134 Identities=12% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhc--cceeec
Q 017575 163 NRGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFG--MHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~--~~i~~~ 235 (369)
+.++++|||++.+. ...+..|+.+++... ...-.+|.|+|..+. .+.+.|.+||. +.+.+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~------------~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~ 269 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLH------------TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLH 269 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHH------------HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC
Confidence 46799999998774 356778888776421 011234455553222 36789999994 668888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+.+..|+..+. ....+.++++++.+|+.-... +.|.+...+.
T Consensus 270 ~p-d~e~r~~iL~~k~-----------------------------~~~~~~l~~evl~~la~~~~~----dir~L~g~l~ 315 (445)
T PRK12422 270 PL-TKEGLRSFLERKA-----------------------------EALSIRIEETALDFLIEALSS----NVKSLLHALT 315 (445)
T ss_pred CC-CHHHHHHHHHHHH-----------------------------HHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHH
Confidence 88 5666767765331 112578999999988875542 4577776666
Q ss_pred HHH---HHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 316 AAK---ALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 316 ~a~---a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
... +.+.+.+++ ++.++++.++...+.
T Consensus 316 ~l~~~~a~~~~~~~~-i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 316 LLAKRVAYKKLSHQL-LYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHHHHHHhhCCC-CCHHHHHHHHHHhhh
Confidence 553 566666644 899999999987653
No 198
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.18 E-value=4.9e-11 Score=116.11 Aligned_cols=198 Identities=20% Similarity=0.153 Sum_probs=130.6
Q ss_pred CeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhh
Q 017575 58 GGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRV 137 (369)
Q Consensus 58 g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (369)
-.+++.|.+|+||--+++++.........+ ..+|+.......+.++++++..
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpf--vAvNCaAip~~liesELFGy~~-------------------------- 388 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPF--VAVNCAAIPEALIESELFGYVA-------------------------- 388 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCe--EEEEeccchHHhhhHHHhccCc--------------------------
Confidence 349999999999999999999887622221 1122222223333444443211
Q ss_pred hcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC-
Q 017575 138 CGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE- 216 (369)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~- 216 (369)
.++.+....-..|.+.+++++.+|+||+..+|.+.|..|+.+|+++.++-. |.+. .+.++.+|++++-+
T Consensus 389 -------GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~--g~~~-~~vdirvi~ath~dl 458 (606)
T COG3284 389 -------GAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPL--GGTR-IKVDIRVIAATHRDL 458 (606)
T ss_pred -------cccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceecc--CCcc-eeEEEEEEeccCcCH
Confidence 111122223346788889999999999999999999999999999987654 5555 77899999999943
Q ss_pred -----CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH
Q 017575 217 -----EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL 291 (369)
Q Consensus 217 -----~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~ 291 (369)
.+.+.+.|+.|+.. +.+.-|+.++...++... .++...... ....+++++
T Consensus 459 ~~lv~~g~fredLyyrL~~-~~i~lP~lr~R~d~~~~l-----------------------~~~~~~~~~-~~~~l~~~~ 513 (606)
T COG3284 459 AQLVEQGRFREDLYYRLNA-FVITLPPLRERSDRIPLL-----------------------DRILKREND-WRLQLDDDA 513 (606)
T ss_pred HHHHHcCCchHHHHHHhcC-eeeccCchhcccccHHHH-----------------------HHHHHHccC-CCccCCHHH
Confidence 25689999999865 444444344433333221 122222222 347899999
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 292 KVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 292 ~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
+..|..+..-.++ |.+.++++.+.+++
T Consensus 514 ~~~l~~~~WPGNi---rel~~v~~~~~~l~ 540 (606)
T COG3284 514 LARLLAYRWPGNI---RELDNVIERLAALS 540 (606)
T ss_pred HHHHHhCCCCCcH---HHHHHHHHHHHHcC
Confidence 9888887765444 88888887766554
No 199
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-10 Score=105.36 Aligned_cols=134 Identities=19% Similarity=0.320 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCCCC------------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecC---CCCCCCCHhHHhh
Q 017575 163 NRGILYVDEVNLLD------------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGN---PEEGELRPQLLDR 227 (369)
Q Consensus 163 ~~~vl~lDE~~~l~------------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n---~~~~~l~~al~~R 227 (369)
+.||+||||++... ..+|..|+-+++.-.+.. +.| .+ ...++.||++.- .-|..+-|.|.-|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG-~V-kTdHILFIasGAFh~sKPSDLiPELQGR 326 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYG-PV-KTDHILFIASGAFHVAKPSDLIPELQGR 326 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-ccc-cc-ccceEEEEecCceecCChhhcChhhcCC
Confidence 78999999994321 136778887776433321 111 11 123677777743 1234588999999
Q ss_pred hccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--
Q 017575 228 FGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD-- 305 (369)
Q Consensus 228 ~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~-- 305 (369)
|.+++++... +.+.+.+|+..- ....+.++.+-..-..-.+.+++++++.|++++...+..
T Consensus 327 fPIRVEL~~L-t~~Df~rILtep----------------~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~E 389 (444)
T COG1220 327 FPIRVELDAL-TKEDFERILTEP----------------KASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTE 389 (444)
T ss_pred CceEEEcccC-CHHHHHHHHcCc----------------chHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhccccc
Confidence 9999999999 567788888732 233455555555555557889999999999999865432
Q ss_pred --CCchhHHHHHH
Q 017575 306 --GLRGDIVSNRA 316 (369)
Q Consensus 306 --s~R~~~~ll~~ 316 (369)
+.|++..++..
T Consensus 390 NIGARRLhTvlEr 402 (444)
T COG1220 390 NIGARRLHTVLER 402 (444)
T ss_pred chhHHHHHHHHHH
Confidence 55776665544
No 200
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.2e-11 Score=101.41 Aligned_cols=180 Identities=18% Similarity=0.125 Sum_probs=102.0
Q ss_pred CCccccChHH-HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 34 PFTAIVGQEE-MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 34 ~~~~i~G~~~-~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
+++.-+|... +++.+++.+ ..|. +.|.||||+||||++|.|+.++.|+++.....-......+......+...+.
T Consensus 6 ~l~K~y~~~v~AvrdVSF~a---e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEA---EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred ehhhhccCHHhhhhheeEEe---ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecC
Confidence 3444556544 788999998 7888 8899999999999999999999988643222222222233333333222221
Q ss_pred ccccchhhhhcc------ccccCCCC---CchHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-C
Q 017575 112 KGEELSITFSKI------NMVDLPLG---ATEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV-N 173 (369)
Q Consensus 112 ~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~-~ 173 (369)
........+.+. .++.+... ...+.+...++....+......++.|+-++ .+|.++++||| +
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 111111111111 11111111 112234444444444444444455555333 28999999999 8
Q ss_pred CCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhcc
Q 017575 174 LLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGM 230 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~ 230 (369)
.+|-.....+.+.|..- . ...-.+|.++...+ =.++++||+.+
T Consensus 163 GLDi~~~r~~~dfi~q~----k--------~egr~viFSSH~m~--EvealCDrviv 205 (245)
T COG4555 163 GLDIRTRRKFHDFIKQL----K--------NEGRAVIFSSHIMQ--EVEALCDRVIV 205 (245)
T ss_pred CccHHHHHHHHHHHHHh----h--------cCCcEEEEecccHH--HHHHhhheEEE
Confidence 99999888888888641 1 12334555555321 13679999855
No 201
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=1.5e-09 Score=107.44 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhh--ccceeec
Q 017575 163 NRGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRF--GMHAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~--~~~i~~~ 235 (369)
+.++|+|||++.+. ...+..|+.+++... ...-.+|.|+|-.+. .+.+.|.+|| .+.+.+.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~ 444 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ 444 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcC
Confidence 35799999997664 345778888887521 112234556664332 2678999999 5567888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
.| +.+.+.+|+..+ ...+.+.++++++++|..-... +.|.+..++.
T Consensus 445 ~P-D~EtR~aIL~kk-----------------------------a~~r~l~l~~eVi~yLa~r~~r----nvR~LegaL~ 490 (617)
T PRK14086 445 PP-ELETRIAILRKK-----------------------------AVQEQLNAPPEVLEFIASRISR----NIRELEGALI 490 (617)
T ss_pred CC-CHHHHHHHHHHH-----------------------------HHhcCCCCCHHHHHHHHHhccC----CHHHHHHHHH
Confidence 88 567777776632 1223689999999999876653 5688888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 316 AAKALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
...+.|.+.++. |+.+.++.++...+.
T Consensus 491 rL~a~a~~~~~~-itl~la~~vL~~~~~ 517 (617)
T PRK14086 491 RVTAFASLNRQP-VDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHhhCCC-CCHHHHHHHHHHhhc
Confidence 777788887654 888888888876544
No 202
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.15 E-value=1.7e-11 Score=112.94 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=86.5
Q ss_pred CCCccccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 33 YPFTAIVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 33 ~~~~~i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
.+++..+| ...+++.+++.+ ..|. +.|+||||+||||++++|+++..+.++.....-.............+.+..
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i---~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEV---EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred cceEEEeCCCCEEEeceeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 46777888 588999999999 7887 999999999999999999999988653211111000000111122222222
Q ss_pred hccccchhhhhcc------ccccCCC---CCchHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKI------NMVDLPL---GATEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~- 172 (369)
+.....+..+++. .++..+. ......+...+++..........++.|+.++ ++|.++|||||
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 2222222222211 1111110 0112223333332221011112233333222 48999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
+.+|+.....++++|.+
T Consensus 165 ~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 165 SGLDPESRREIWELLRE 181 (293)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 89999999999998875
No 203
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=2e-11 Score=107.94 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=43.4
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++..|++..+++.+++.+ ..|. +.|+||||+|||||+|++.+++++..
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v---~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~ 58 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSV---EKGEITALIGPNGAGKSTLLKAILGLLKPSS 58 (254)
T ss_pred eeeEEEECCEeeeeccEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 46667778546999999999 7788 99999999999999999999998875
No 204
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.6e-11 Score=113.33 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
++...+|...+++.+++.+ ..|. +.|+||+||||||++|+||++..++++. .+..++.. .-....+..+
T Consensus 8 ~v~K~yg~~~~l~~i~l~i---~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l----~P~~R~iamV 80 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDI---EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL----PPEKRGIAMV 80 (338)
T ss_pred eeEEEcCCceeeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----ChhHCCEEEE
Confidence 4555667654888899998 7777 9999999999999999999999887621 12222221 1112256666
Q ss_pred hhccccchhhhhccccc-cC-----CCCC---chHhhhcccchhHH-------hhhccccc-ccchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMV-DL-----PLGA---TEDRVCGTIDIEKA-------LTEGVKAF-EPGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~-~~-----~~~~---~~~~~~~~~~~~~~-------~~~g~~~~-~~g~~~~a~~~vl~lDE~ 172 (369)
||...++++.+++.++. .+ +-.. ........+.+... ++||+.+. ..|.-...+|.++++|||
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 77777777776654321 11 1011 11123334444433 34444421 122222348999999999
Q ss_pred -CCCCHHHHHHHHHHHhc
Q 017575 173 -NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~~ 189 (369)
.++|......++..+.+
T Consensus 161 lSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 161 LSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred hhHhhHHHHHHHHHHHHH
Confidence 77999887777766653
No 205
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.14 E-value=4.7e-11 Score=103.55 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=43.2
Q ss_pred CCCccccChHH----HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 33 YPFTAIVGQEE----MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 33 ~~~~~i~G~~~----~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.|++..++... +++.+++.+ ..|. +.|+|++||||||++++++++.++..
T Consensus 7 ~nl~~~y~~~~~~~~~l~~VS~~i---~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 7 RNLSIVYGGGKFAFHALNNVSLEI---ERGETLGIVGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred eceEEEecCCcchhhhhcceeEEe---cCCCEEEEEcCCCCCHHHHHHHHhcccCCCC
Confidence 45666677666 899999999 7888 88999999999999999999998875
No 206
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=7.8e-11 Score=100.02 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=92.2
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce--------eecCCCCCCCCCCcchh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK--------VVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~--------~~~~~~~~~~~~~~~~~ 102 (369)
+.+++..||...+++.+.+.+ ..+. ..|+||+||||||++|++-++-.... ...+.++.....+...+
T Consensus 10 ~~~l~~yYg~~~aL~~i~l~i---~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 10 VRDLNLYYGDKHALKDINLDI---PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred ecceeEEECchhhhccCceec---cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 457888899999999999998 5666 89999999999999999987765432 11223333333455667
Q ss_pred hhhhhhhhhccccchhhhhccccccCC----CCC-c-----hH-----hhhccc-----chhHHhhhcccccccchhhhc
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLP----LGA-T-----ED-----RVCGTI-----DIEKALTEGVKAFEPGLLAKA 162 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-----~~-----~~~~~~-----~~~~~~~~g~~~~~~g~~~~a 162 (369)
+..+.-+||....++ .+++.++.-.+ ... . +. .+|+.. +....++||+.+.- +++++
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL--cIARa 163 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL--CIARA 163 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH--HHHHH
Confidence 778888888777776 33443322111 000 0 00 111110 00011233332110 11222
Q ss_pred ---CCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 163 ---NRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 163 ---~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+|.|+++||| ..|||-....+-++|.+
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~e 194 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITE 194 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence 8999999999 78999877777666654
No 207
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.13 E-value=1.6e-09 Score=113.66 Aligned_cols=145 Identities=15% Similarity=0.223 Sum_probs=106.2
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCch
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATE 134 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (369)
.-+. ++|.|.||+|||+++-++|+..+ ..+.++.......-.++++.
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG-------~kliRINLSeQTdL~DLfGs------------------------- 1588 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTG-------KKLIRINLSEQTDLCDLFGS------------------------- 1588 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhc-------CceEEeeccccchHHHHhCC-------------------------
Confidence 3444 99999999999999999999984 33333333322222233321
Q ss_pred HhhhcccchhHHhhhcccccccchhhhc--CCCeEEEeCCCCCCHHHHHHHHHHHhcC-CceeeecceeeeecCceEEEe
Q 017575 135 DRVCGTIDIEKALTEGVKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDVLLDSAASG-WNTVEREGISISHPARFILIG 211 (369)
Q Consensus 135 ~~~~~~~~~~~~~~~g~~~~~~g~~~~a--~~~vl~lDE~~~l~~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~~~~li~ 211 (369)
--... .+|+..|..+++..| ++++++|||+|.....+..-|...|+.+ ...+++...++..+++|.+.|
T Consensus 1589 ------d~Pve--~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFA 1660 (4600)
T COG5271 1589 ------DLPVE--EGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFA 1660 (4600)
T ss_pred ------CCCcc--cCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeee
Confidence 11101 356667776666554 8999999999999999999999999865 456676677888889999999
Q ss_pred ecCCCCCC-----CCHhHHhhhccceeecCCCCHH
Q 017575 212 SGNPEEGE-----LRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 212 t~n~~~~~-----l~~al~~R~~~~i~~~~~~~~~ 241 (369)
|.||+... ++..+++||.+ |.++.....+
T Consensus 1661 aqNPq~qggGRKgLPkSF~nRFsv-V~~d~lt~dD 1694 (4600)
T COG5271 1661 AQNPQDQGGGRKGLPKSFLNRFSV-VKMDGLTTDD 1694 (4600)
T ss_pred ecCchhcCCCcccCCHHHhhhhhe-EEecccccch
Confidence 99998642 89999999987 8888775544
No 208
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.10 E-value=1.3e-11 Score=114.42 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=87.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..+|...+++.+++.+ ..|. +.|.||+||||||++|+||++-.++++.. +..+... ..-...+..+
T Consensus 10 ~v~k~yg~~~av~~isl~i---~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l----pp~kR~ig~V 82 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDI---KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV----PPEKRPIGMV 82 (352)
T ss_pred eeeeecCCeeEEecceeee---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC----Chhhccccee
Confidence 4566788777899999999 7887 77999999999999999999998876321 2222221 1111255667
Q ss_pred hhccccchhhhhccccccCCCC----Cc----hHhhhccc---ch-------hHHhhhcccccc-cchhhhcCCCeEEEe
Q 017575 110 VVKGEELSITFSKINMVDLPLG----AT----EDRVCGTI---DI-------EKALTEGVKAFE-PGLLAKANRGILYVD 170 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~---~~-------~~~~~~g~~~~~-~g~~~~a~~~vl~lD 170 (369)
||...++++.++..++- .++. .. ..+....+ .+ ...+++|+.... ..+-...+|.+++||
T Consensus 83 FQ~YALFPHltV~~NVa-fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD 161 (352)
T COG3842 83 FQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD 161 (352)
T ss_pred ecCcccCCCCcHHHHhh-hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc
Confidence 77777888777654321 1111 01 01111111 11 133344443211 111111289999999
Q ss_pred CC-CCCCHHHHHHHHHHHh
Q 017575 171 EV-NLLDDHLVDVLLDSAA 188 (369)
Q Consensus 171 E~-~~l~~~~~~~L~~~l~ 188 (369)
|| ..+|......+..-+.
T Consensus 162 EPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 162 EPLSALDAKLREQMRKELK 180 (352)
T ss_pred CcccchhHHHHHHHHHHHH
Confidence 99 7888876655554443
No 209
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.09 E-value=2.8e-11 Score=104.19 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=90.5
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcch-hhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEA-MGIEVR 107 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~-~~~~~~ 107 (369)
.+++..||...+++.+++.+ ..|. +.|+|+||+||||++++|+++.++.++. .+.++... .+.. ...-+.
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v---~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~--p~~~r~r~Gi~ 81 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEV---ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL--PPHERARLGIA 81 (237)
T ss_pred EeEeecccceeEEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC--CHHHHHhCCeE
Confidence 46677899989999999999 8888 9999999999999999999999876421 12222111 1111 111222
Q ss_pred hhhhccccchhhhhccccccCCCCCc--------hHhhhcccc--------hhHHhhhcccc-cccchhhhcCCCeEEEe
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGAT--------EDRVCGTID--------IEKALTEGVKA-FEPGLLAKANRGILYVD 170 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--------~~~~~~~g~~~-~~~g~~~~a~~~vl~lD 170 (369)
.+.+....++..+++.++........ .+.++..+- ....+++|+.+ +.-|+-..++|.+++||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence 33333344444444333322111000 112221111 01233455544 22344444689999999
Q ss_pred CC-CCCCHHHHHHHHHHHhc
Q 017575 171 EV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 171 E~-~~l~~~~~~~L~~~l~~ 189 (369)
|| ..+.|.+...+.+++.+
T Consensus 162 EPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 162 EPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred CCccCcCHHHHHHHHHHHHH
Confidence 99 68999988888887764
No 210
>PRK05642 DNA replication initiation factor; Validated
Probab=99.07 E-value=3.4e-09 Score=94.64 Aligned_cols=130 Identities=11% Similarity=0.136 Sum_probs=82.0
Q ss_pred CCeEEEeCCCCCC--HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC-CC-CCHhHHhhhc--cceeecCC
Q 017575 164 RGILYVDEVNLLD--DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE-GE-LRPQLLDRFG--MHAQVGTV 237 (369)
Q Consensus 164 ~~vl~lDE~~~l~--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~-~~-l~~al~~R~~--~~i~~~~~ 237 (369)
.++++||+++.+. +..+..|+.+++... . .....+++++.+++ .. ..+.|.+||. ..+.+.+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~--------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~ 166 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLR---D--------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGL 166 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHH---h--------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCC
Confidence 4599999997664 456777888886421 0 01223344433222 22 4689999993 45778888
Q ss_pred CCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 017575 238 RDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAA 317 (369)
Q Consensus 238 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a 317 (369)
+ .+....+++.+ +. ...+.++++++++|...... +.|.+..++..-
T Consensus 167 ~-~e~~~~il~~k---------------------------a~--~~~~~l~~ev~~~L~~~~~~----d~r~l~~~l~~l 212 (234)
T PRK05642 167 S-DEDKLRALQLR---------------------------AS--RRGLHLTDEVGHFILTRGTR----SMSALFDLLERL 212 (234)
T ss_pred C-HHHHHHHHHHH---------------------------HH--HcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHH
Confidence 4 45555554422 11 12578999999988887754 678888877777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHh
Q 017575 318 KALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 318 ~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
-..+...++ .|+..-+++++.
T Consensus 213 ~~~~l~~~~-~it~~~~~~~L~ 233 (234)
T PRK05642 213 DQASLQAQR-KLTIPFLKETLG 233 (234)
T ss_pred HHHHHHcCC-cCCHHHHHHHhc
Confidence 554444444 488888887764
No 211
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.07 E-value=1.9e-10 Score=100.35 Aligned_cols=144 Identities=19% Similarity=0.118 Sum_probs=89.2
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCC--cchhhhhhhhhhhccccc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPED--PEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 116 (369)
.+++.+.+.+ ..|. +.|+||+|||||||+++++++..+..+. .+.+....... .......+..+||...++
T Consensus 19 ~~L~~v~l~i---~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 19 EALKDVNLEI---EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred EecccceEEE---cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 4688889998 7888 9999999999999999999999886532 12122222111 112244677778888888
Q ss_pred hhhhhcccccc---C-CCCC--c---hHhhhcccch--------hHHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCH
Q 017575 117 SITFSKINMVD---L-PLGA--T---EDRVCGTIDI--------EKALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 117 ~~~~~~~~~~~---~-~~~~--~---~~~~~~~~~~--------~~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
+..++..++.. + .... . ...+...+++ ...++||+.+.. -+...-.+|.+++.||| .+||.
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 87776543321 1 1111 0 1111212111 234555554322 22222238999999999 78999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
+.-..+++++.+
T Consensus 176 ~t~~~V~~ll~~ 187 (226)
T COG1136 176 KTAKEVLELLRE 187 (226)
T ss_pred HHHHHHHHHHHH
Confidence 988888888765
No 212
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.06 E-value=6.9e-11 Score=109.79 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=76.5
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++.++.. +.+... ........+...++....
T Consensus 4 ~~~~~l~~vs~~i---~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 4 GDFKAVDGVNFKV---REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR---EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred CCeeEEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc---CHHHHHhhcEEecCCCCC
Confidence 4445677888888 7787 89999999999999999999998765321 111110 111111122222332222
Q ss_pred chhhhhccccc------cCCCCC---chHhhhcccchh-------HHhhhccccc-ccchhhhcCCCeEEEeCC-CCCCH
Q 017575 116 LSITFSKINMV------DLPLGA---TEDRVCGTIDIE-------KALTEGVKAF-EPGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 116 ~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~-------~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
++..++...+. ..+... ....+...+++. ..+++|+.+. ..+.....+|.++++||| +.+|+
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 22212211110 000000 011122222222 2233333221 111122238999999999 89999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
.....+++++.+
T Consensus 158 ~~~~~l~~~l~~ 169 (302)
T TIGR01188 158 RTRRAIWDYIRA 169 (302)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 213
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=6.9e-11 Score=101.91 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=95.2
Q ss_pred CCcccc-ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec-CCCCCCCCCC---cchhhhhhh
Q 017575 34 PFTAIV-GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV-GDPYNSDPED---PEAMGIEVR 107 (369)
Q Consensus 34 ~~~~i~-G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~ 107 (369)
+++..| |...+++.+++.+ +.|. +.|+||+|+|||||+|+|.++..+..+.. .......... ...+...+.
T Consensus 8 nl~k~yp~~~~aL~~Vnl~I---~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 8 NLSKTYPGGHQALKDVNLEI---NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred eeeeecCCCceeeeeEeEEe---CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 455566 7788899999999 7887 99999999999999999999988765311 1111111111 223345677
Q ss_pred hhhhccccchhhhhccccccC--CCCCchHhhhcccchh----------------------HHhhhcccccc-cchhhhc
Q 017575 108 ESVVKGEELSITFSKINMVDL--PLGATEDRVCGTIDIE----------------------KALTEGVKAFE-PGLLAKA 162 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------------~~~~~g~~~~~-~g~~~~a 162 (369)
..||+..+++..++..++... +...+-.++++.+... ..+++|+.... -+.....
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 778888777776655433321 1122223333333222 23344443321 1112223
Q ss_pred CCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 163 NRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 163 ~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+|.+++.||| ..|||..-...++.|.+
T Consensus 165 ~pkiILADEPvasLDp~~a~~Vm~~l~~ 192 (258)
T COG3638 165 QPKIILADEPVASLDPESAKKVMDILKD 192 (258)
T ss_pred CCCEEecCCcccccChhhHHHHHHHHHH
Confidence 7899999999 89999887777777764
No 214
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.05 E-value=4.3e-11 Score=112.53 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=42.0
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++.+
T Consensus 46 nl~k~y~~~~~l~~is~~i---~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~ 95 (340)
T PRK13536 46 GVSKSYGDKAVVNGLSFTV---ASGECFGLLGPNGAGKSTIARMILGMTSPDA 95 (340)
T ss_pred EEEEEECCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCCCCCc
Confidence 4555567667889999998 7787 99999999999999999999998765
No 215
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.04 E-value=5.7e-11 Score=110.36 Aligned_cols=49 Identities=27% Similarity=0.321 Sum_probs=41.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++.+
T Consensus 12 ~l~k~~~~~~~l~~vsl~i---~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~ 61 (306)
T PRK13537 12 NVEKRYGDKLVVDGLSFHV---QRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61 (306)
T ss_pred eEEEEECCeEEEecceEEE---eCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4444566656788999998 7787 89999999999999999999998765
No 216
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.04 E-value=9.6e-11 Score=101.33 Aligned_cols=151 Identities=21% Similarity=0.211 Sum_probs=90.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCC-Ccchhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPE-DPEAMGIEVRE 108 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~-~~~~~~~~~~~ 108 (369)
+++.-+|...+.+.+.+.+ .+|. +.++||+||||||++|+|.+++.+.++. .+.+...... ....+...+..
T Consensus 13 ~v~~~fG~~~Ild~v~l~V---~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv 89 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDV---PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGV 89 (263)
T ss_pred eeeeecCCEEEecCceeee---cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeE
Confidence 5556679999999999999 7888 8899999999999999999999987632 2222211111 11133445666
Q ss_pred hhhccccchhhhhccccccCCCC----CchHhhh-------cccchhHH-hhhcccccccchhhh--------cCCCeEE
Q 017575 109 SVVKGEELSITFSKINMVDLPLG----ATEDRVC-------GTIDIEKA-LTEGVKAFEPGLLAK--------ANRGILY 168 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~-~~~g~~~~~~g~~~~--------a~~~vl~ 168 (369)
.||++.+++..++..++ .+|.. .++..+. ....+... ...-..+++.|+..+ .+|.++|
T Consensus 90 lFQ~gALFssltV~eNV-afplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~ 168 (263)
T COG1127 90 LFQQGALFSSLTVFENV-AFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168 (263)
T ss_pred EeeccccccccchhHhh-heehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence 78888888777654322 11111 1111110 00000000 011111233333322 2899999
Q ss_pred EeCC-CCCCHHHHHHHHHHHh
Q 017575 169 VDEV-NLLDDHLVDVLLDSAA 188 (369)
Q Consensus 169 lDE~-~~l~~~~~~~L~~~l~ 188 (369)
+||| ..+||-....+-+++.
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHH
Confidence 9999 7899876666665554
No 217
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.2e-09 Score=99.60 Aligned_cols=154 Identities=22% Similarity=0.359 Sum_probs=89.7
Q ss_pred CCCccccChHHHHHHhhhhhccC------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcc
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDP------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPE 100 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 100 (369)
..++++-|.+.++..+...++-| ..+.+||.||||+|||+|++++|...... |
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at-------f-------- 214 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT-------F-------- 214 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce-------E--------
Confidence 36888888877777665555322 12249999999999999999999988421 1
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhh---cCCCeEEEeCCCCC--
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK---ANRGILYVDEVNLL-- 175 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---a~~~vl~lDE~~~l-- 175 (369)
+.+..........|. + .....+.+.. ..|.|+|+||++.+
T Consensus 215 -------------------------f~iSassLtsK~~Ge---------~-eK~vralf~vAr~~qPsvifidEidslls 259 (428)
T KOG0740|consen 215 -------------------------FNISASSLTSKYVGE---------S-EKLVRALFKVARSLQPSVIFIDEIDSLLS 259 (428)
T ss_pred -------------------------eeccHHHhhhhccCh---------H-HHHHHHHHHHHHhcCCeEEEechhHHHHh
Confidence 111100000010000 0 0111112212 25889999999432
Q ss_pred ---------CHHHH-HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHH
Q 017575 176 ---------DDHLV-DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVK 245 (369)
Q Consensus 176 ---------~~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~ 245 (369)
++... +.|++.. +.....+..+.+|+|+|- +..+++++++||.-++-++.| +.+.+..
T Consensus 260 ~Rs~~e~e~srr~ktefLiq~~----------~~~s~~~drvlvigaTN~-P~e~Dea~~Rrf~kr~yiplP-d~etr~~ 327 (428)
T KOG0740|consen 260 KRSDNEHESSRRLKTEFLLQFD----------GKNSAPDDRVLVIGATNR-PWELDEAARRRFVKRLYIPLP-DYETRSL 327 (428)
T ss_pred hcCCcccccchhhhhHHHhhhc----------cccCCCCCeEEEEecCCC-chHHHHHHHHHhhceeeecCC-CHHHHHH
Confidence 12222 2222222 222222347899999994 567999999999988888888 4555544
Q ss_pred HHH
Q 017575 246 IVE 248 (369)
Q Consensus 246 il~ 248 (369)
++.
T Consensus 328 ~~~ 330 (428)
T KOG0740|consen 328 LWK 330 (428)
T ss_pred HHH
Confidence 433
No 218
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=3.8e-10 Score=99.23 Aligned_cols=171 Identities=18% Similarity=0.088 Sum_probs=96.5
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchh----
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSI---- 118 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 118 (369)
++..+++.+ +.|. ++++||||+||||++|.+++++.+.++.....-..-..........+..++.....+-|
T Consensus 39 AVqdisf~I---P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 39 AVQDISFEI---PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhheeeeec---CCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 677888888 7787 99999999999999999999998876332211111001111122222222221111111
Q ss_pred ---hhhccccccCCCC---CchHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-CCCCHHHHHHH
Q 017575 119 ---TFSKINMVDLPLG---ATEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV-NLLDDHLVDVL 183 (369)
Q Consensus 119 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~-~~l~~~~~~~L 183 (369)
..+...++.+|.. ...+.+...+++..-+....+.++.|-..+ .+|.|+||||| -.||-..+..+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 1122233444432 233444555555543433334444443333 27999999999 58999999999
Q ss_pred HHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhcc
Q 017575 184 LDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGM 230 (369)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~ 230 (369)
++.+.+-.. .....++.|++... --+++.+|+.+
T Consensus 196 r~Flke~n~-----------~~~aTVllTTH~~~--di~~lc~rv~~ 229 (325)
T COG4586 196 REFLKEYNE-----------ERQATVLLTTHIFD--DIATLCDRVLL 229 (325)
T ss_pred HHHHHHHHH-----------hhCceEEEEecchh--hHHHhhhheEE
Confidence 999875211 12344555655322 23678888643
No 219
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.02 E-value=8e-11 Score=104.17 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=35.3
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 19 ~il~~~sl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 59 (218)
T cd03266 19 QAVDGVSFTV---KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59 (218)
T ss_pred eeecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 4788888888 6777 99999999999999999999998765
No 220
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.02 E-value=6.7e-09 Score=91.15 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=109.0
Q ss_pred CCCCCccccChHHHHHHhhhhh---c-cCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNV---I-DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l---~-~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
....+++++|-+..++.+.... + .....|+||.|+.|||||+++|++.....+.. +..+....
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G------LRlIev~k------- 88 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG------LRLIEVSK------- 88 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC------ceEEEECH-------
Confidence 3457888999766655443332 2 12333599999999999999999998875332 00000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCC-CCCHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVN-LLDDHLVDVLLD 185 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~-~l~~~~~~~L~~ 185 (369)
+.+.....+...+.. ....-|+|+|+.. .-.......|..
T Consensus 89 ----------------------------~~L~~l~~l~~~l~~-----------~~~kFIlf~DDLsFe~~d~~yk~LKs 129 (249)
T PF05673_consen 89 ----------------------------EDLGDLPELLDLLRD-----------RPYKFILFCDDLSFEEGDTEYKALKS 129 (249)
T ss_pred ----------------------------HHhccHHHHHHHHhc-----------CCCCEEEEecCCCCCCCcHHHHHHHH
Confidence 000000000000010 1123499999984 333445677777
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCCC--------------CC------CC--HhHHhhhccceeecCCCCHHHH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPEE--------------GE------LR--PQLLDRFGMHAQVGTVRDAELR 243 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--------------~~------l~--~al~~R~~~~i~~~~~~~~~~~ 243 (369)
+|+. .....|.++.+.+|+|--- .+ +. -+|.|||.+.+.+.+|+. +..
T Consensus 130 ~LeG---------gle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q-~~Y 199 (249)
T PF05673_consen 130 VLEG---------GLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQ-EEY 199 (249)
T ss_pred HhcC---------ccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCH-HHH
Confidence 7763 3344578899999988310 01 11 257789999888888854 444
Q ss_pred HHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCH-HHHHHHHHHHHHcCCCCCchhHHHH
Q 017575 244 VKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDH-DLKVKISKVCAELNVDGLRGDIVSN 314 (369)
Q Consensus 244 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~~l~~~~~~~~~~s~R~~~~ll 314 (369)
.+|+... .....+.+++ +.......++..-|..|.|.+...+
T Consensus 200 L~IV~~~-----------------------------~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 200 LAIVRHY-----------------------------AERYGLELDEEELRQEALQWALRRGGRSGRTARQFI 242 (249)
T ss_pred HHHHHHH-----------------------------HHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4554421 1122466764 4445566677665655777665543
No 221
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.02 E-value=1.7e-10 Score=100.73 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=37.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 9 ~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (201)
T cd03231 9 ERDGRALFSGLSFTL---AAGEALQVTGPNGSGKTTLLRILAGLSPPLA 54 (201)
T ss_pred EeCCceeeccceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344445677888888 6777 99999999999999999999998765
No 222
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=7.7e-11 Score=100.38 Aligned_cols=124 Identities=16% Similarity=0.127 Sum_probs=71.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFS 121 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (369)
.+++.+.+.+ ..|. +.|+||+|+|||||+++|++..++..+.....-.............+...++....++..
T Consensus 14 ~~l~~~~~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 88 (173)
T cd03230 14 TALDDISLTV---EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL-- 88 (173)
T ss_pred eeeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCC--
Confidence 4677788888 6777 999999999999999999999876542111100000000000111111111211111000
Q ss_pred ccccccCCCCCchHhhhcccchhHHhhhccccc-ccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 122 KINMVDLPLGATEDRVCGTIDIEKALTEGVKAF-EPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
...+.+. +++|+.+. ..+.....+|.++++||| ..+|+.....+.+.+.+
T Consensus 89 ----------tv~~~~~--------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 89 ----------TVRENLK--------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred ----------cHHHHhh--------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 1111111 45555432 223333348999999999 79999999999999875
No 223
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=1.3e-10 Score=102.98 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=37.4
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 9 ~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 54 (220)
T cd03265 9 KYGDFEAVRGVSFRV---RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred EECCEEeeeceeEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 344445778888888 6777 89999999999999999999987765
No 224
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.4e-10 Score=95.85 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=83.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
+++.-||...+++.+++.+ ..|. .-|+||+|+|||||+..++++++.+++.....-..+..++...-.....++..
T Consensus 6 nv~K~y~~~~vl~~isl~i---~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 6 NVSKSYGTKVVLDDVSLDI---PKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred hhhHhhCCEEeeccceeee---cCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 4556688888899999998 7777 89999999999999999999998876322111111111121111111112211
Q ss_pred cccchhhhhccccc---cCCCCC---c-hH-----hhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC
Q 017575 113 GEELSITFSKINMV---DLPLGA---T-ED-----RVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV 172 (369)
Q Consensus 113 ~~~~~~~~~~~~~~---~~~~~~---~-~~-----~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~ 172 (369)
...+........++ ..|.+. + ++ .....+++. ..++||++... .+++.-.+.+.++||||
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 11111111001111 122111 1 11 112222222 44566665533 33443347789999999
Q ss_pred -CCCCHHHHHHHHHHHhc
Q 017575 173 -NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~~ 189 (369)
|+||-..-..++++|+.
T Consensus 163 LNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 163 LNNLDMKHSVQIMKILRR 180 (252)
T ss_pred ccccchHHHHHHHHHHHH
Confidence 99998766666666653
No 225
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.02 E-value=3.5e-10 Score=101.82 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=37.9
Q ss_pred ccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
-++ ...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++.+
T Consensus 10 ~~~~~~~il~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 56 (243)
T TIGR02315 10 VYPNGKQALKNINLNI---NPGEFVAIIGPSGAGKSTLLRCINRLVEPSS 56 (243)
T ss_pred ecCCCcceeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 344 445788888998 7787 99999999999999999999998764
No 226
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.01 E-value=9.8e-11 Score=102.51 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=37.1
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|++..++..
T Consensus 11 ~~~~~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 55 (204)
T PRK13538 11 RDERILFSGLSFTL---NAGELVQIEGPNGAGKTSLLRILAGLARPDA 55 (204)
T ss_pred ECCEEEEecceEEE---CCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 44444677888888 7777 99999999999999999999998765
No 227
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.2e-10 Score=102.75 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=37.8
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 9 ~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 54 (213)
T cd03259 9 TYGSVRALDDLSLTV---EPGEFLALLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred EeCCeeeecceeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344445788888888 7787 99999999999999999999998765
No 228
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.2e-10 Score=102.47 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=75.8
Q ss_pred cChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
++...+++.+++.+ ..|.+.|+||||+|||||+++|++++++.++.. +.+.... .......+...++....
T Consensus 10 ~~~~~~l~~vs~~i---~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 10 YGKKRALDGVSLTL---GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ---PQKLRRRIGYLPQEFGV 83 (211)
T ss_pred ECCEEEEcceeEEE---cCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc---hHHHHhheEEecCCCcc
Confidence 34434677888888 556789999999999999999999998765321 2111110 01111122222232222
Q ss_pred chhhhhccccc------cCCCCCch---HhhhcccchhH-------Hhhhcccc-cccchhhhcCCCeEEEeCC-CCCCH
Q 017575 116 LSITFSKINMV------DLPLGATE---DRVCGTIDIEK-------ALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 116 ~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~-------~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
++..++...+. ........ ......+++.. .+++|+.. ...+.....+|.++++||| ..+|+
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 163 (211)
T cd03264 84 YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP 163 (211)
T ss_pred cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 22212111110 00000000 11122222221 22333322 1111222238999999999 89999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
..+..+.+.+.+
T Consensus 164 ~~~~~l~~~l~~ 175 (211)
T cd03264 164 EERIRFRNLLSE 175 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 229
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.2e-10 Score=104.29 Aligned_cols=46 Identities=33% Similarity=0.433 Sum_probs=38.1
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 8 ~~~~~~~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 54 (235)
T cd03261 8 KSFGGRTVLKGVDLDV---RRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred EEECCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3345445778888888 7787 99999999999999999999998765
No 230
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.01 E-value=2.9e-09 Score=89.49 Aligned_cols=157 Identities=16% Similarity=0.230 Sum_probs=81.8
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
||+++++.+.-.+......| ++|.||+|+||+++|+.++..+--... .......+.. .. .+..+..-+.
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~-----~~~~c~~c~~----c~-~~~~~~~~d~ 70 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP-----NEDPCGECRS----CR-RIEEGNHPDF 70 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT------CTT--SSSHH----HH-HHHTT-CTTE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCCCCCCCHH----HH-HHHhccCcce
Confidence 78888888887774333345 899999999999999999988842211 0000000000 00 0000000000
Q ss_pred hhhccccccCCC---CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceee
Q 017575 119 TFSKINMVDLPL---GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVE 195 (369)
Q Consensus 119 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~ 195 (369)
. .+.... .-..+.+- .+... ..... ..+...|++|||++.+..+.+++|++.||+
T Consensus 71 ~-----~~~~~~~~~~i~i~~ir-------~i~~~---~~~~~-~~~~~KviiI~~ad~l~~~a~NaLLK~LEe------ 128 (162)
T PF13177_consen 71 I-----IIKPDKKKKSIKIDQIR-------EIIEF---LSLSP-SEGKYKVIIIDEADKLTEEAQNALLKTLEE------ 128 (162)
T ss_dssp E-----EEETTTSSSSBSHHHHH-------HHHHH---CTSS--TTSSSEEEEEETGGGS-HHHHHHHHHHHHS------
T ss_pred E-----EEecccccchhhHHHHH-------HHHHH---HHHHH-hcCCceEEEeehHhhhhHHHHHHHHHHhcC------
Confidence 0 000000 00011110 00000 00001 113466999999999999999999999998
Q ss_pred ecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCC
Q 017575 196 REGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTV 237 (369)
Q Consensus 196 ~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~ 237 (369)
.|.+..+|.+++. ...+.+++++||.. +.+.++
T Consensus 129 -------pp~~~~fiL~t~~-~~~il~TI~SRc~~-i~~~~l 161 (162)
T PF13177_consen 129 -------PPENTYFILITNN-PSKILPTIRSRCQV-IRFRPL 161 (162)
T ss_dssp -------TTTTEEEEEEES--GGGS-HHHHTTSEE-EEE---
T ss_pred -------CCCCEEEEEEECC-hHHChHHHHhhceE-EecCCC
Confidence 2455555555552 34699999999975 877654
No 231
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.01 E-value=1.8e-10 Score=100.89 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=38.4
Q ss_pred ccccCh-HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 36 TAIVGQ-EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 36 ~~i~G~-~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+..++. ..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 6 ~~~~~~~~~~l~~v~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 54 (205)
T cd03226 6 SFSYKKGTEILDDLSLDL---YAGEIIALTGKNGAGKTTLAKILAGLIKESS 54 (205)
T ss_pred EEEeCCcCceeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 334444 45778888888 6777 99999999999999999999998765
No 232
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.9e-09 Score=99.87 Aligned_cols=174 Identities=13% Similarity=0.180 Sum_probs=97.2
Q ss_pred CccccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhc
Q 017575 35 FTAIVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 35 ~~~i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
+..++| |+.+++.+.-.+....-.| ++|+||+|+||+++|+.++..+--.....+.+|+. + ... ..+..
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~-----C---~~c-~~~~~ 74 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGT-----C---TNC-KRIDS 74 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCc-----C---HHH-HHHhc
Confidence 456788 8888888888873222334 89999999999999999988873211000111110 0 000 00000
Q ss_pred cccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 017575 113 GEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWN 192 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~ 192 (369)
+..-+ +..+.+.. . .+.+... ..-...+.... ..++..|++|||++++....++.|++.|++
T Consensus 75 ~~hpD-------~~~i~~~~---~---~i~id~i-r~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEE--- 136 (329)
T PRK08058 75 GNHPD-------VHLVAPDG---Q---SIKKDQI-RYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEE--- 136 (329)
T ss_pred CCCCC-------EEEecccc---c---cCCHHHH-HHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcC---
Confidence 10000 00000000 0 0000000 00000001111 224567999999999999999999999997
Q ss_pred eeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHH
Q 017575 193 TVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~ 248 (369)
.|.+..+|++++ ....+.+++.+||.. +++.+++. +....++.
T Consensus 137 ----------Pp~~~~~Il~t~-~~~~ll~TIrSRc~~-i~~~~~~~-~~~~~~L~ 179 (329)
T PRK08058 137 ----------PSGGTTAILLTE-NKHQILPTILSRCQV-VEFRPLPP-ESLIQRLQ 179 (329)
T ss_pred ----------CCCCceEEEEeC-ChHhCcHHHHhhcee-eeCCCCCH-HHHHHHHH
Confidence 234555555555 234689999999986 99998854 44445554
No 233
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.00 E-value=1.3e-10 Score=102.96 Aligned_cols=41 Identities=32% Similarity=0.359 Sum_probs=36.2
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 15 ~~il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (220)
T cd03263 15 KPAVDDLSLNV---YKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56 (220)
T ss_pred ceeecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45788889998 7787 99999999999999999999998765
No 234
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3.7e-09 Score=98.77 Aligned_cols=160 Identities=13% Similarity=0.215 Sum_probs=95.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
.|++++||+.+++.+...+......| ++|+||+|+|||++|+.++..+--.. .. ..+++...-... .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~-----~~---~~h~D~~~~~~~----~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKS-----QQ---REYVDIIEFKPI----N 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCC-----CC---CCCCCeEEeccc----c
Confidence 47889999999999888874323335 89999999999999999998763110 00 000000000000 0
Q ss_pred cccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 017575 113 GEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWN 192 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~ 192 (369)
+. ....+.+. .. .. .....+ ..++..|++||+++.+....++.|++.|++
T Consensus 70 ~~----------------~i~v~~ir------~~-~~---~~~~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEe--- 119 (313)
T PRK05564 70 KK----------------SIGVDDIR------NI-IE---EVNKKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE--- 119 (313)
T ss_pred CC----------------CCCHHHHH------HH-HH---HHhcCc-ccCCceEEEEechhhcCHHHHHHHHHHhcC---
Confidence 00 00000100 00 00 000011 124567999999999999999999999987
Q ss_pred eeeecceeeeecCceE-EEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 193 TVEREGISISHPARFI-LIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~-li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
.|.+.. ++.|.|+ ..+.+.+.+||.. +.+.+++ .+.....+..
T Consensus 120 ----------pp~~t~~il~~~~~--~~ll~TI~SRc~~-~~~~~~~-~~~~~~~l~~ 163 (313)
T PRK05564 120 ----------PPKGVFIILLCENL--EQILDTIKSRCQI-YKLNRLS-KEEIEKFISY 163 (313)
T ss_pred ----------CCCCeEEEEEeCCh--HhCcHHHHhhcee-eeCCCcC-HHHHHHHHHH
Confidence 233433 4444444 4689999999975 8888884 4444455543
No 235
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.00 E-value=7e-09 Score=91.60 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCCeEEEeCCCCCCHH--HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhcc--ceeec
Q 017575 163 NRGILYVDEVNLLDDH--LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFGM--HAQVG 235 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~--~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~~--~i~~~ 235 (369)
+.++++||+++.+... .+..|+.+++... ...-.+|.|++-.+. .+.+.|.+||.. .+.+.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~ 164 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ 164 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcC
Confidence 4579999999877654 5888888887521 111223444442222 267899999854 78888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+| +.+.+.+|+..+. ..+.+.+++++.++|.+.... +.|.+..++.
T Consensus 165 ~p-d~~~r~~il~~~a-----------------------------~~~~~~l~~~v~~~l~~~~~~----~~r~L~~~l~ 210 (219)
T PF00308_consen 165 PP-DDEDRRRILQKKA-----------------------------KERGIELPEEVIEYLARRFRR----DVRELEGALN 210 (219)
T ss_dssp ----HHHHHHHHHHHH-----------------------------HHTT--S-HHHHHHHHHHTTS----SHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHH-----------------------------HHhCCCCcHHHHHHHHHhhcC----CHHHHHHHHH
Confidence 88 5677767766331 123577999999998877643 5688877777
Q ss_pred HHHHHHHH
Q 017575 316 AAKALAAL 323 (369)
Q Consensus 316 ~a~a~A~l 323 (369)
...+.+.+
T Consensus 211 ~l~~~~~~ 218 (219)
T PF00308_consen 211 RLDAYAQL 218 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77666554
No 236
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=1.1e-10 Score=100.01 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=72.0
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
+...+++.+.+.+ ..|. +.|+||+|+|||||+++|++..++.++.. +.+..............+...++....
T Consensus 11 ~~~~~l~~i~~~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (178)
T cd03229 11 GQKTVLNDVSLNI---EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL 87 (178)
T ss_pred CCeEEEeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCcc
Confidence 3334677778888 6777 88999999999999999999998754211 111111000000111111111111110
Q ss_pred chhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 116 LSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
++.. +... .+.. .+++|+.+ ...+.....+|.++++||| ..+|+..+..+.+++.+
T Consensus 88 ~~~~-------------t~~~---~l~~--~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 88 FPHL-------------TVLE---NIAL--GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145 (178)
T ss_pred CCCC-------------CHHH---heee--cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0000 0000 0000 03445443 2233334458999999999 89999999999998875
No 237
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.00 E-value=1.2e-10 Score=108.35 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=40.0
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 10 l~~~~~~~~~l~~vsl~i---~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~ 58 (303)
T TIGR01288 10 VSKSYGDKVVVNDLSFTI---ARGECFGLLGPNGAGKSTIARMLLGMISPDR 58 (303)
T ss_pred EEEEeCCeEEEcceeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 344456555788999998 7787 99999999999999999999998765
No 238
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.00 E-value=1.4e-10 Score=102.64 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=35.9
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 17 ~~il~~~s~~i---~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 58 (218)
T cd03255 17 VQALKGVSLSI---EKGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58 (218)
T ss_pred eeEEeeeEEEE---cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc
Confidence 45788888888 7787 99999999999999999999998765
No 239
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4e-09 Score=103.47 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=51.3
Q ss_pred cCCCeEEEeCCCCCCH-----------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hh
Q 017575 162 ANRGILYVDEVNLLDD-----------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RF 228 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~-----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~ 228 (369)
++|+|+|+||++.+.| .+.+.|+.-|+.-. | . ..+.+++++.. +..+++||++ |+
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------g----l-~GV~i~aaTsR-pdliDpALLRpGRl 826 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------G----L-DGVYILAATSR-PDLIDPALLRPGRL 826 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------c----c-ceEEEEEecCC-ccccCHhhcCCCcc
Confidence 5899999999976655 37788888886411 1 1 13455565553 3359999998 88
Q ss_pred ccceeecCCCCHHHHHHHHH
Q 017575 229 GMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 229 ~~~i~~~~~~~~~~~~~il~ 248 (369)
+-.+.-+.| +...+.+|++
T Consensus 827 D~~v~C~~P-~~~eRl~il~ 845 (952)
T KOG0735|consen 827 DKLVYCPLP-DEPERLEILQ 845 (952)
T ss_pred ceeeeCCCC-CcHHHHHHHH
Confidence 877777777 5666777766
No 240
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.99 E-value=1.5e-10 Score=103.91 Aligned_cols=44 Identities=32% Similarity=0.512 Sum_probs=37.1
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||||+|||||+++|++..++.+
T Consensus 11 ~~~~~il~~~s~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (240)
T PRK09493 11 FGPTQVLHNIDLNI---DQGEVVVIIGPSGSGKSTLLRCINKLEEITS 55 (240)
T ss_pred ECCeEEeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 44445778888888 6777 99999999999999999999998765
No 241
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.4e-09 Score=104.20 Aligned_cols=211 Identities=18% Similarity=0.210 Sum_probs=127.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++-++|+++-++.+.--+......+-+|+|+||+|||.++.-+|..+....+ | ..+.. .
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~V----P------------~~L~~----~ 227 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDV----P------------ESLKD----K 227 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCC----C------------HHHcC----C
Confidence 35668999888777766664333334999999999999999999988843221 0 00000 0
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccch---hhhcCCCeEEEeCCCCCC---------HHHHH
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGL---LAKANRGILYVDEVNLLD---------DHLVD 181 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~a~~~vl~lDE~~~l~---------~~~~~ 181 (369)
.++.+.. ..+...-.. .|.......+. +..+++-|+||||+|.+= -+.-+
T Consensus 228 ----------~i~sLD~----g~LvAGaky----RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN 289 (786)
T COG0542 228 ----------RIYSLDL----GSLVAGAKY----RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN 289 (786)
T ss_pred ----------EEEEecH----HHHhccccc----cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh
Confidence 0000000 000000000 00000000111 223357799999995431 22445
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC----CCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCC
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE----LRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNP 257 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~----l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~ 257 (369)
.|.-.|..| .+.+|++++..++. -++||.+||.. |.+..|+ .+.-..|+.
T Consensus 290 iLKPaLARG---------------eL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs-~e~ti~ILr--------- 343 (786)
T COG0542 290 LLKPALARG---------------ELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPS-VEDTIAILR--------- 343 (786)
T ss_pred hhHHHHhcC---------------CeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCC-HHHHHHHHH---------
Confidence 555555554 35567777755543 58999999986 9999995 444445544
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHc
Q 017575 258 KEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~ 324 (369)
.+.......+.|.++++++.+...++.++-.+ =+..++++++-|.+...+.
T Consensus 344 ----------------Glk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 344 ----------------GLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred ----------------HHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 44555566678999999999999888865321 3567899999999888875
No 242
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.99 E-value=8.3e-11 Score=109.16 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=78.1
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..+...................+...++....
T Consensus 10 ~~~~~~~~l~~is~~i---~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l 86 (301)
T TIGR03522 10 KLYGTQNALDEVSFEA---QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPL 86 (301)
T ss_pred EEECCEEEEEEeEEEE---eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCC
Confidence 3345545677888888 7887 99999999999999999999998775321111101100111111122222222222
Q ss_pred chhhhhcccc------ccCCCC---CchHhhhcccchhHHhhhcccccccchhh--------hcCCCeEEEeCC-CCCCH
Q 017575 116 LSITFSKINM------VDLPLG---ATEDRVCGTIDIEKALTEGVKAFEPGLLA--------KANRGILYVDEV-NLLDD 177 (369)
Q Consensus 116 ~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~g~~~--------~a~~~vl~lDE~-~~l~~ 177 (369)
.+..++...+ +..+.. .....+...+++..........++.|..+ ..+|.++++||| +.+|+
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~ 166 (301)
T TIGR03522 87 YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDP 166 (301)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 2221211111 000000 00111111222211111111122233322 238999999999 89999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
..+..+++.+.+
T Consensus 167 ~~~~~l~~~l~~ 178 (301)
T TIGR03522 167 NQLVEIRNVIKN 178 (301)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 243
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.99 E-value=1.2e-10 Score=104.39 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=36.7
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 11 ~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 55 (236)
T TIGR03864 11 YGARRALDDVSFTV---RPGEFVALLGPNGAGKSTLFSLLTRLYVAQE 55 (236)
T ss_pred ECCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 34444677888888 6777 99999999999999999999998765
No 244
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.9e-09 Score=90.90 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=90.0
Q ss_pred CCCeEEEeCCCC-----------CCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVNL-----------LDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~~-----------l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
+.+++|+||++. -|.++|..+++++.+-. | .....++-++.++|. +..+++||++ |++
T Consensus 270 kaciiffdeidaiggarfddg~ggdnevqrtmleli~qld------g--fdprgnikvlmatnr-pdtldpallrpgrld 340 (435)
T KOG0729|consen 270 KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLD------G--FDPRGNIKVLMATNR-PDTLDPALLRPGRLD 340 (435)
T ss_pred ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhcc------C--CCCCCCeEEEeecCC-CCCcCHhhcCCcccc
Confidence 568999999932 24578999999887511 1 223356888889994 3459999997 888
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCc
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLR 308 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R 308 (369)
..+++..| +-+.+..|++... +...++.++ .++|+.+|-. . +.-
T Consensus 341 rkvef~lp-dlegrt~i~kiha-------------------------------ksmsverdir~ellarlcpn--s-tga 385 (435)
T KOG0729|consen 341 RKVEFGLP-DLEGRTHIFKIHA-------------------------------KSMSVERDIRFELLARLCPN--S-TGA 385 (435)
T ss_pred cceeccCC-cccccceeEEEec-------------------------------cccccccchhHHHHHhhCCC--C-cch
Confidence 88888888 3344444433111 112333333 2344455431 1 234
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 309 GDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 309 ~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.+.+++.-|.-.|...-+..++..|+..|+..|...
T Consensus 386 eirsvcteagmfairarrk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 386 EIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 566778888888887778889999999998887664
No 245
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.99 E-value=1.8e-10 Score=101.11 Aligned_cols=144 Identities=22% Similarity=0.238 Sum_probs=75.8
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.++.. +.+.... ......+...++...
T Consensus 10 ~~~~~~l~~~~~~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~i~~~~q~~~ 82 (208)
T cd03268 10 YGKKRVLDDISLHV---KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN----IEALRRIGALIEAPG 82 (208)
T ss_pred ECCeEeEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch----HHHHhhEEEecCCCc
Confidence 34445777888888 6777 99999999999999999999998765321 1111100 001111222222222
Q ss_pred cchhhhhccccc---c-CCCC-CchHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCHHHH
Q 017575 115 ELSITFSKINMV---D-LPLG-ATEDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDDHLV 180 (369)
Q Consensus 115 ~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~~~~ 180 (369)
.++..++...+. . .... .....+...+++. ..+++|+.+.. .......+|.++++||| +.+|+...
T Consensus 83 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 162 (208)
T cd03268 83 FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGI 162 (208)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence 221111111110 0 0000 0011111222221 22334443211 12222238999999999 89999999
Q ss_pred HHHHHHHhc
Q 017575 181 DVLLDSAAS 189 (369)
Q Consensus 181 ~~L~~~l~~ 189 (369)
..+.+.+.+
T Consensus 163 ~~l~~~l~~ 171 (208)
T cd03268 163 KELRELILS 171 (208)
T ss_pred HHHHHHHHH
Confidence 999988875
No 246
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.99 E-value=1.7e-10 Score=95.32 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=97.2
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCC--------CCCCC-
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYN--------SDPED- 98 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~--------~~~~~- 98 (369)
+.++..-+|..++++.+++.. ..|+ |-|+|.+|+||||++|||.=+-.|..+.. +..+. ....+
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A---~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQA---NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred hhHHHhhcccchhhcceeeec---CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 446777899999999999997 6777 88999999999999999987776654221 11111 11111
Q ss_pred --cchhhhhhhhhhhccccchhhhhccccccCCC---CCc----hHhhhcccchh----------HHhhhcccccccchh
Q 017575 99 --PEAMGIEVRESVVKGEELSITFSKINMVDLPL---GAT----EDRVCGTIDIE----------KALTEGVKAFEPGLL 159 (369)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~----------~~~~~g~~~~~~g~~ 159 (369)
...+++.+.-+||+..+++..++..+.+.-|. +.+ .+.....+... .-+++|+.... .+
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~--aI 163 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV--AI 163 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH--HH
Confidence 12356788889999999988886655444332 111 11111111111 11223322211 01
Q ss_pred hhc---CCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 160 AKA---NRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 160 ~~a---~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+++ +|.++++||| ..+||+.....+.+|.+
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~ 197 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence 111 7999999999 78999988888888875
No 247
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.99 E-value=1.9e-10 Score=101.34 Aligned_cols=44 Identities=34% Similarity=0.380 Sum_probs=36.8
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 10 ~~~~~~l~~~s~~i---~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (213)
T cd03262 10 FGDFHVLKGIDLTV---KKGEVVVIIGPSGSGKSTLLRCINLLEEPDS 54 (213)
T ss_pred ECCeEeecCceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 44445677888888 6777 99999999999999999999998764
No 248
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=2.7e-10 Score=99.39 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=37.1
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 11 ~~~~~il~~~s~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 55 (200)
T PRK13540 11 YHDQPLLQQISFHL---PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK 55 (200)
T ss_pred eCCeeEEeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 34445778888888 7777 99999999999999999999998765
No 249
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=5.4e-09 Score=97.11 Aligned_cols=187 Identities=14% Similarity=0.208 Sum_probs=97.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCC----CCCCcchhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNS----DPEDPEAMGIEVRE 108 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 108 (369)
.|++++||+.++..+..++....-.| +||+||+|+||+++|++++..+--... ...+.. ...+|+...-.-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~--c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS--PSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC--CCCcHhcccccCCCCCEEEEeccc
Confidence 47899999999999988884222224 999999999999999999988742210 000000 00011100000000
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
. ..+......... ..+. .....+.+.+... ..-.......+ ..+...|++||+++.+.....++|++.|+
T Consensus 80 ~-~~g~~~~~~~~~----~~~~---~~~~~~~I~id~i-r~i~~~l~~~p-~~~~~kVvII~~ae~m~~~aaNaLLK~LE 149 (314)
T PRK07399 80 Q-HQGKLITASEAE----EAGL---KRKAPPQIRLEQI-REIKRFLSRPP-LEAPRKVVVIEDAETMNEAAANALLKTLE 149 (314)
T ss_pred c-ccccccchhhhh----hccc---cccccccCcHHHH-HHHHHHHccCc-ccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 0 000000000000 0000 0000000100000 00000000001 12356799999999999999999999998
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
+ .| +..+|..++ .+..+.+++.+||.. +.+.+++. +....++..
T Consensus 150 E-------------Pp-~~~fILi~~-~~~~Ll~TI~SRcq~-i~f~~l~~-~~~~~~L~~ 193 (314)
T PRK07399 150 E-------------PG-NGTLILIAP-SPESLLPTIVSRCQI-IPFYRLSD-EQLEQVLKR 193 (314)
T ss_pred C-------------CC-CCeEEEEEC-ChHhCcHHHHhhceE-EecCCCCH-HHHHHHHHH
Confidence 7 23 333444444 234699999999976 99988854 444555553
No 250
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.99 E-value=2.4e-10 Score=103.57 Aligned_cols=49 Identities=29% Similarity=0.354 Sum_probs=40.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 17 ~l~~~~~~~~il~~isl~i---~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~ 66 (257)
T PRK11247 17 AVSKRYGERTVLNQLDLHI---PAGQFVAVVGRSGCGKSTLLRLLAGLETPSA 66 (257)
T ss_pred EEEEEECCcceeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4444456656788889998 6777 99999999999999999999998764
No 251
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.9e-10 Score=103.43 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=37.3
Q ss_pred ccCh-HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQ-EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~-~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++. ..+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 9 ~~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 55 (241)
T cd03256 9 TYPNGKKALKDVSLSI---NPGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55 (241)
T ss_pred ecCCccEEEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 3443 44678888888 7787 99999999999999999999997654
No 252
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.98 E-value=1.8e-10 Score=100.31 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=36.7
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|++..++..
T Consensus 10 ~~~~~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (198)
T TIGR01189 10 RGERMLFEGLSFTL---NAGEALQVTGPNGIGKTTLLRILAGLLRPDS 54 (198)
T ss_pred ECCEEEEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 44445677888888 6777 99999999999999999999987765
No 253
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.97 E-value=5.3e-10 Score=95.84 Aligned_cols=127 Identities=25% Similarity=0.276 Sum_probs=71.7
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
+...+++.+++.+ ..|. ++|+||+|+|||||+++|+++.++..+.. +.+... .........+...++ .
T Consensus 10 ~~~~~l~~~~~~i---~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~--~~~~~~~~~i~~~~q---~ 81 (180)
T cd03214 10 GGRTVLDDLSLSI---EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS--LSPKELARKIAYVPQ---A 81 (180)
T ss_pred CCeeeEeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc--CCHHHHHHHHhHHHH---H
Confidence 3334677778887 6777 99999999999999999999998765321 111111 011111112222222 0
Q ss_pred chhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 116 LSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+. .+. ....... ....+++|+.+ ...+.....+|.++++||| +.+|+.....+.++|.+
T Consensus 82 l~-------~~g--l~~~~~~------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 82 LE-------LLG--LAHLADR------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HH-------HcC--CHhHhcC------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 00 000 0000000 01123344432 2223333348999999999 79999999999998875
No 254
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1.1e-10 Score=102.73 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=36.3
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 10 ~~~~~~l~~v~~~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (210)
T cd03269 10 FGRVTALDDISFSV---EKGEIFGLLGPNGAGKTTTIRMILGIILPDS 54 (210)
T ss_pred ECCEEEEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 34444667788888 6777 89999999999999999999987765
No 255
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.97 E-value=9.3e-08 Score=84.40 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHH
Q 017575 165 GILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 165 ~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
.+++|.|.+.+..+.|.+|+..|+. +...+.+|.+.|- ...+-+|+.+||.. +.++-|++.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEk-------------Ys~~~RlIl~cns-~SriIepIrSRCl~-iRvpaps~ee 190 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEK-------------YSSNCRLILVCNS-TSRIIEPIRSRCLF-IRVPAPSDEE 190 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHH-------------HhcCceEEEEecC-cccchhHHhhheeE-EeCCCCCHHH
Confidence 4999999999999999999999986 2346788888884 45689999999976 9999996544
No 256
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=3.1e-10 Score=101.87 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=38.5
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+..++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 9 ~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (239)
T cd03296 9 SKRFGDFVALDDVSLDI---PSGELVALLGPSGSGKTTLLRLIAGLERPDS 56 (239)
T ss_pred EEEECCEEeeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 33445445778888888 6777 99999999999999999999998764
No 257
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.4e-10 Score=102.79 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 17 ~~il~~vs~~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 58 (220)
T cd03293 17 VTALEDISLSV---EEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58 (220)
T ss_pred eEEEeceeEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 34677888888 6777 99999999999999999999987765
No 258
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.96 E-value=2.9e-10 Score=100.09 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 14 ~~il~~vs~~i---~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (211)
T cd03225 14 RPALDDISLTI---KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS 55 (211)
T ss_pred eeeecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 45788888888 7787 99999999999999999999998765
No 259
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.96 E-value=1.6e-10 Score=102.08 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=35.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 17 ~il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 57 (216)
T TIGR00960 17 PALDNLNFHI---TKGEMVFLVGHSGAGKSTFLKLILGIEKPTR 57 (216)
T ss_pred eEEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3677888888 6777 99999999999999999999998765
No 260
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.96 E-value=2.6e-10 Score=100.63 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 15 ~~il~~is~~i---~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (214)
T TIGR02673 15 VAALHDVSLHI---RKGEFLFLTGPSGAGKTTLLKLLYGALTPSR 56 (214)
T ss_pred ceeecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 34778888888 7787 99999999999999999999987654
No 261
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=2.1e-10 Score=108.64 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=80.5
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+. .+.++... .+ ....+..++|....
T Consensus 15 ~~~~~l~~vsl~i---~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~--~~--~~r~ig~v~Q~~~l 87 (356)
T PRK11650 15 GKTQVIKGIDLDV---ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL--EP--ADRDIAMVFQNYAL 87 (356)
T ss_pred CCCEEEeeeeEEE---cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC--CH--HHCCEEEEeCCccc
Confidence 4444677888888 7777 8999999999999999999999876532 12222111 11 11234445555444
Q ss_pred chhhhhcccccc-CC---CCC--c---hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCH
Q 017575 116 LSITFSKINMVD-LP---LGA--T---EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 116 ~~~~~~~~~~~~-~~---~~~--~---~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
+++.++..++.. .. ... . ...+...+++. ..+++|+.+.. .+.....+|.++++||| ..+|+
T Consensus 88 fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~ 167 (356)
T PRK11650 88 YPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167 (356)
T ss_pred cCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 444443322210 00 000 0 01122222222 22334433211 11122238999999999 79999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
..+..+++.|.+
T Consensus 168 ~~r~~l~~~l~~ 179 (356)
T PRK11650 168 KLRVQMRLEIQR 179 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999988888864
No 262
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.96 E-value=1.2e-08 Score=88.03 Aligned_cols=69 Identities=13% Similarity=0.265 Sum_probs=50.4
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHH
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
+...++++||++++....++.|+..|++. +....+|+++|. ...+.+++.+|+.+ +.+.+++ .+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~-~~~l~~~i~sr~~~-~~~~~~~-~~ 158 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPS-PEKLLPTIRSRCQV-LPFPPLS-EE 158 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECC-hHhChHHHHhhcEE-eeCCCCC-HH
Confidence 34569999999999999999999999761 234445555542 25689999999975 8898885 44
Q ss_pred HHHHH
Q 017575 242 LRVKI 246 (369)
Q Consensus 242 ~~~~i 246 (369)
+..++
T Consensus 159 ~~~~~ 163 (188)
T TIGR00678 159 ALLQW 163 (188)
T ss_pred HHHHH
Confidence 44444
No 263
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.96 E-value=3.7e-10 Score=99.52 Aligned_cols=45 Identities=29% Similarity=0.425 Sum_probs=37.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 8 ~~~~~~~l~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 53 (213)
T cd03235 8 SYGGHPVLEDVSFEV---KPGEFLAIVGPNGAGKSTLLKAILGLLKPTS 53 (213)
T ss_pred EECCEEeeecceeEE---cCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 344445778888888 7787 99999999999999999999997764
No 264
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.96 E-value=2.3e-10 Score=102.45 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=37.2
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 9 ~~~~~~~l~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 54 (236)
T cd03219 9 RFGGLVALDDVSFSV---RPGEIHGLIGPNGAGKTTLFNLISGFLRPTS 54 (236)
T ss_pred EECCEEEecCceEEe---cCCcEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 344444677888888 6777 99999999999999999999998765
No 265
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.96 E-value=2.7e-10 Score=100.45 Aligned_cols=46 Identities=28% Similarity=0.362 Sum_probs=38.2
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.-++...+++.+++.+ ..|. ++|+||||+|||||+++|++++++..
T Consensus 8 ~~~~~~~~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (213)
T cd03301 8 KRFGNVTALDDLNLDI---ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54 (213)
T ss_pred EEECCeeeeeceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3345445788888888 7787 89999999999999999999997764
No 266
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.8e-09 Score=103.35 Aligned_cols=143 Identities=18% Similarity=0.133 Sum_probs=83.1
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC-Ccchhhhhhhhhhhccccchhhh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE-DPEAMGIEVRESVVKGEELSITF 120 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
.+.+.+++.+ +.|. +.|+|++||||||+++.+++.++++++....+-..+.. +...+++. ..++.....+...+
T Consensus 352 ~~L~~~~l~l---~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~-i~vl~Qr~hlF~~T 427 (573)
T COG4987 352 KALKNFNLTL---AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET-ISVLTQRVHLFSGT 427 (573)
T ss_pred chhhccceee---cCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH-HhhhccchHHHHHH
Confidence 5899999999 6776 99999999999999999999998876322111111111 11112222 22223333333344
Q ss_pred hccccccCCCCCchHhhhcccc---hh-----------HHhhhcccccccc--------hhhhcCCCeEEEeCC-CCCCH
Q 017575 121 SKINMVDLPLGATEDRVCGTID---IE-----------KALTEGVKAFEPG--------LLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~~~g~~~~~~g--------~~~~a~~~vl~lDE~-~~l~~ 177 (369)
++.++..-..+.+.+.++..+. .. ..+..+...++.| ++...+..++++||| ..+|+
T Consensus 428 lr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 4444433333444444432221 11 1122222233322 233348899999999 79999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
.....+++.+.+
T Consensus 508 ~TE~~vL~ll~~ 519 (573)
T COG4987 508 ITERQVLALLFE 519 (573)
T ss_pred hhHHHHHHHHHH
Confidence 998888888865
No 267
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.95 E-value=4.5e-10 Score=97.14 Aligned_cols=43 Identities=30% Similarity=0.389 Sum_probs=36.5
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 3 ~~~~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 46 (190)
T TIGR01166 3 GGPEVLKGLNFAA---ERGEVLALLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred CccceecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3345678888888 7777 99999999999999999999998765
No 268
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1e-09 Score=98.07 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=51.5
Q ss_pred CCCeEEEeCCCC-----------CCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVNL-----------LDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~~-----------l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
.|+++|+||++. .+.++|..|++++++ + .....-..+-+|.|+|. +..+++||++ |++
T Consensus 225 ~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq----m----dgfd~l~rVk~ImatNr-pdtLdpaLlRpGRld 295 (388)
T KOG0651|consen 225 IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ----M----DGFDTLHRVKTIMATNR-PDTLDPALLRPGRLD 295 (388)
T ss_pred CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHh----h----ccchhcccccEEEecCC-ccccchhhcCCcccc
Confidence 578999999943 356688999998874 1 11122235667889994 4458999997 788
Q ss_pred cceeecCCCCHHHHHHHH
Q 017575 230 MHAQVGTVRDAELRVKIV 247 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il 247 (369)
-.+++|-| ....+..|+
T Consensus 296 rk~~iPlp-ne~~r~~I~ 312 (388)
T KOG0651|consen 296 RKVEIPLP-NEQARLGIL 312 (388)
T ss_pred ceeccCCc-chhhceeeE
Confidence 88888877 455444443
No 269
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.95 E-value=2.2e-10 Score=100.38 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=37.8
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 6 ~~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 52 (206)
T TIGR03608 6 KKFGDKIILDDLNLTI---EKGKMYAIIGESGSGKSTLLNIIGLLEKFDS 52 (206)
T ss_pred EEECCEEEEeceEEEE---eCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3344445677888888 6777 99999999999999999999998764
No 270
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.9e-09 Score=104.89 Aligned_cols=166 Identities=25% Similarity=0.247 Sum_probs=113.9
Q ss_pred ccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceee-ec----cee---eeecCceEEEeecCCCCCC-CC
Q 017575 151 VKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVE-RE----GIS---ISHPARFILIGSGNPEEGE-LR 221 (369)
Q Consensus 151 ~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~-~~----~~~---~~~~~~~~li~t~n~~~~~-l~ 221 (369)
.....+|.+.+||+|||||||+..|....++.+++.|.+++..+. .. +.. -..|.++.+|+..|..... +.
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~ 292 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLH 292 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhc
Confidence 445779999999999999999999999999999988877643221 10 112 3466788999999965532 45
Q ss_pred HhHHhhhcc---ceeec--CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHH
Q 017575 222 PQLLDRFGM---HAQVG--TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKIS 296 (369)
Q Consensus 222 ~al~~R~~~---~i~~~--~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~ 296 (369)
+++.+|... ...+. .|..++.+.+.++ ...........-..++.++...|.
T Consensus 293 ~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~------------------------~~~q~v~~d~~ip~~~~~Av~~li 348 (647)
T COG1067 293 EPDRSRIEGFGYEAEFEDTMPITDANRSKLVQ------------------------FYVQELARDGNIPHLDKDAVEELI 348 (647)
T ss_pred ccCHHHHhhcceEEEEcCCCCCChHHHHHHHH------------------------HHHHHHHhcCCCCCCCHHHHHHHH
Confidence 555555332 23333 3334444444322 122223333345688888888877
Q ss_pred HHHHHc-CC-----CCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 297 KVCAEL-NV-----DGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 297 ~~~~~~-~~-----~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
..+.+. +- .+.|.+..+++.|..+|..+|++.|+.+|+.+|+..
T Consensus 349 ~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 349 REAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred HHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 766542 11 167899999999999999999999999999999886
No 271
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=4.4e-10 Score=98.62 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=37.2
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 11 ~~~~~~~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (207)
T PRK13539 11 VRGGRVLFSGLSFTL---AAGEALVLTGPNGSGKTTLLRLIAGLLPPAA 56 (207)
T ss_pred EECCeEEEeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344444677888888 6777 99999999999999999999987664
No 272
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=3.3e-10 Score=101.26 Aligned_cols=40 Identities=30% Similarity=0.327 Sum_probs=35.6
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 19 ~il~~~s~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 59 (233)
T cd03258 19 TALKDVSLSV---PKGEIFGIIGRSGAGKSTLIRCINGLERPTS 59 (233)
T ss_pred eeeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5778888888 7777 99999999999999999999998765
No 273
>PRK04132 replication factor C small subunit; Provisional
Probab=98.94 E-value=1.1e-08 Score=105.22 Aligned_cols=150 Identities=21% Similarity=0.252 Sum_probs=99.7
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHH
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELR 243 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~ 243 (369)
..|+||||+++++...|++|+..|++ .+..+.+|+++|+ ...+.+++.+||.. +.+.+++..+..
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEe-------------p~~~~~FILi~N~-~~kIi~tIrSRC~~-i~F~~ls~~~i~ 695 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEM-------------FSSNVRFILSCNY-SSKIIEPIQSRCAI-FRFRPLRDEDIA 695 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhC-------------CCCCeEEEEEeCC-hhhCchHHhhhceE-EeCCCCCHHHHH
Confidence 46999999999999999999999996 2346677888885 45688999999986 999888544433
Q ss_pred HHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 017575 244 VKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL 323 (369)
Q Consensus 244 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l 323 (369)
..+. .+.+ ...+.++++++..|+..+.. +.|.++++++.+.+..
T Consensus 696 -~~L~-------------------------~I~~----~Egi~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~~-- 739 (846)
T PRK04132 696 -KRLR-------------------------YIAE----NEGLELTEEGLQAILYIAEG----DMRRAINILQAAAALD-- 739 (846)
T ss_pred -HHHH-------------------------HHHH----hcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc--
Confidence 2222 2222 12467889988888877753 6799999888765432
Q ss_pred cCCCCCCHH------------HHHHHHhHHhcccccC--------CCCCCCChhHHHHHHHHhh
Q 017575 324 KGRDKVSAE------------DIATVMPNCLRHRLRK--------DPLESIDSGLLIIEKFYEV 367 (369)
Q Consensus 324 ~~~~~v~~~------------~i~~a~~~vl~~r~~~--------~~~~~~~~~~~~~~~~~~~ 367 (369)
..|+.+ ++.+++...+..+... ....+++.++++.++++.+
T Consensus 740 ---~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l 800 (846)
T PRK04132 740 ---DKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREV 800 (846)
T ss_pred ---CCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 234444 4444555444332211 1135666677777766654
No 274
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.94 E-value=4.1e-10 Score=99.92 Aligned_cols=44 Identities=30% Similarity=0.576 Sum_probs=36.8
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 10 ~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 54 (222)
T cd03224 10 YGKSQILFGVSLTV---PEGEIVALLGRNGAGKTTLLKTIMGLLPPRS 54 (222)
T ss_pred cCCeeEeeeeeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 34445677888888 6777 99999999999999999999998764
No 275
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.94 E-value=1.5e-10 Score=109.41 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=82.7
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
+..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+.. +..+... + .....+..++|
T Consensus 11 ~~~~~~~~~l~~vs~~i---~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---~-~~~r~ig~v~Q 83 (353)
T TIGR03265 11 RKRFGAFTALKDISLSV---KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---P-PQKRDYGIVFQ 83 (353)
T ss_pred EEEeCCeEEEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC---C-HHHCCEEEEeC
Confidence 33445544567788887 6777 99999999999999999999998775321 2122110 1 11223445555
Q ss_pred ccccchhhhhcccccc----CCCC--C---chHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-C
Q 017575 112 KGEELSITFSKINMVD----LPLG--A---TEDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~----~~~~--~---~~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~ 173 (369)
....+++.++..++.. .... . ....+...+++. ..+++|+.+.. .+.....+|.+++|||| .
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5555554443322210 0000 0 011222222222 22333333211 12222238999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|...+..+.+.|.+
T Consensus 164 ~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 164 ALDARVREHLRTEIRQ 179 (353)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999888888864
No 276
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=2.5e-10 Score=107.79 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+.. +.++... ......+..+
T Consensus 11 ~l~~~~~~~~~l~~isl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~----~~~~r~ig~v 83 (351)
T PRK11432 11 NITKRFGSNTVIDNLNLTI---KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR----SIQQRDICMV 83 (351)
T ss_pred eEEEEECCeEEEeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC----CHHHCCEEEE
Confidence 3444456555678888888 6777 99999999999999999999998875321 2122110 0111234444
Q ss_pred hhccccchhhhhcccccc-C---CCC--CchH---hhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMVD-L---PLG--ATED---RVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~---~~~--~~~~---~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~ 172 (369)
+|....+++.++..++.. . ... .... .+...+++. ..+++|+.+.. -+.....+|.+++||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 554444444343222110 0 000 0011 111111111 22334433211 12222238999999999
Q ss_pred -CCCCHHHHHHHHHHHhc
Q 017575 173 -NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~~ 189 (369)
..+|+.....+.+.|.+
T Consensus 164 ~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 164 LSNLDANLRRSMREKIRE 181 (351)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 89999999888888864
No 277
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.94 E-value=4.8e-10 Score=100.01 Aligned_cols=45 Identities=33% Similarity=0.555 Sum_probs=37.9
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
-++...+++.+++.+ ..|. +.|+||+|||||||+++|++++++..
T Consensus 9 ~~~~~~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (230)
T TIGR03410 9 YYGQSHILRGVSLEV---PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS 54 (230)
T ss_pred EeCCeEEecceeeEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345445778888888 7787 99999999999999999999998764
No 278
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.2e-07 Score=89.87 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=103.4
Q ss_pred CCeEEEeCCCCCCH--HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC---CCHhHHhhhcc--ceeecC
Q 017575 164 RGILYVDEVNLLDD--HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE---LRPQLLDRFGM--HAQVGT 236 (369)
Q Consensus 164 ~~vl~lDE~~~l~~--~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~---l~~al~~R~~~--~i~~~~ 236 (369)
-++++||++..+.. ..+..|..+++. +. ...-+++.|+...|.. +.+.|.+||.. .+.+.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~----l~--------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~ 243 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNA----LL--------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEP 243 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHH----HH--------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCC
Confidence 45999999976543 567777777764 11 1111566676644444 56899999854 677778
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
| +.+.+..|+..+ .....+.+++++..+|+.-... +.|.+.-.+..
T Consensus 244 P-d~e~r~aiL~kk-----------------------------a~~~~~~i~~ev~~~la~~~~~----nvReLegaL~~ 289 (408)
T COG0593 244 P-DDETRLAILRKK-----------------------------AEDRGIEIPDEVLEFLAKRLDR----NVRELEGALNR 289 (408)
T ss_pred C-CHHHHHHHHHHH-----------------------------HHhcCCCCCHHHHHHHHHHhhc----cHHHHHHHHHH
Confidence 8 567777776532 2344789999999988876553 66888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHhcccccCCCCCCCChhHHHHHHHH
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCLRHRLRKDPLESIDSGLLIIEKFY 365 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~~~~~~~~~~~~~~~~~ 365 (369)
..+.|...++ .++.+.+++++...+...- . +..+.+++.|.+
T Consensus 290 l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~-----~-itie~I~~~Va~ 331 (408)
T COG0593 290 LDAFALFTKR-AITIDLVKEILKDLLRAGE-----K-ITIEDIQKIVAE 331 (408)
T ss_pred HHHHHHhcCc-cCcHHHHHHHHHHhhcccc-----c-CCHHHHHHHHHH
Confidence 8888888887 6899999998887766432 2 556666655543
No 279
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=5.9e-10 Score=99.69 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=85.7
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecC--CC-CCCCCCCcchhhhhhhhhhhc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVG--DP-YNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 112 (369)
...|.-.+.+.+++.+ ..|. +.|.||+|+||||++|+||++..+..+... .. +.... ....-...+...||+
T Consensus 10 ~~~~~~~a~~di~l~i---~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~-~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 10 KRFGAFGALDDISLDI---KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS-NLAVRDRKVGFVFQH 85 (345)
T ss_pred hhcccccccccceeee---cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh-ccchhhcceeEEEec
Confidence 3445555666788888 6787 999999999999999999999988763221 11 11111 112223356666777
Q ss_pred cccchhhhhccccc-cCCCC-------CchHhhh------cccchh----HHhhhcccccc-cchhhhcCCCeEEEeCC-
Q 017575 113 GEELSITFSKINMV-DLPLG-------ATEDRVC------GTIDIE----KALTEGVKAFE-PGLLAKANRGILYVDEV- 172 (369)
Q Consensus 113 ~~~~~~~~~~~~~~-~~~~~-------~~~~~~~------~~~~~~----~~~~~g~~~~~-~g~~~~a~~~vl~lDE~- 172 (369)
..++++.++..++- ..... ....+.. ...+.. ..+++|++... .....-..|.+++||||
T Consensus 86 YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 86 YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 77777776553321 11000 0111111 111110 22344443321 11111138999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
..||..+...|..+|.+
T Consensus 166 ~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 166 GALDAKVRKELRRWLRK 182 (345)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 78899888887777764
No 280
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.93 E-value=5.9e-10 Score=98.32 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=40.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..++...+++.+++.+ ..|. +.|+||||+|||||+++|++..++..
T Consensus 16 ~l~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 65 (214)
T PRK13543 16 ALAFSRNEEPVFGPLDFHV---DAGEALLVQGDNGAGKTTLLRVLAGLLHVES 65 (214)
T ss_pred eEEEecCCceeeecceEEE---CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 3444455555788889998 7777 99999999999999999999998765
No 281
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.5e-09 Score=90.46 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
+++-..|+......+++++ ..|. +.+.||||+|||||+|.+++++.++++
T Consensus 7 ~L~~~R~e~~lf~~L~f~l---~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G 57 (209)
T COG4133 7 NLSCERGERTLFSDLSFTL---NAGEALQITGPNGAGKTTLLRILAGLLRPDAG 57 (209)
T ss_pred hhhhccCcceeecceeEEE---cCCCEEEEECCCCCcHHHHHHHHHcccCCCCC
Confidence 3444456667788888998 7888 889999999999999999999998863
No 282
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.93 E-value=3.4e-10 Score=101.13 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=37.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 9 ~~~~~~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 54 (232)
T cd03218 9 RYGKRKVVNGVSLSV---KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS 54 (232)
T ss_pred EeCCEEeeccceeEe---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344445778888888 6777 99999999999999999999998765
No 283
>PRK10908 cell division protein FtsE; Provisional
Probab=98.93 E-value=6.6e-10 Score=98.60 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 15 ~~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (222)
T PRK10908 15 RQALQGVTFHM---RPGEMAFLTGHSGAGKSTLLKLICGIERPSA 56 (222)
T ss_pred CeEEeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 34677888888 7787 99999999999999999999998765
No 284
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.93 E-value=6.4e-10 Score=101.39 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=39.3
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 13 l~~~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 61 (265)
T PRK10253 13 LTLGYGKYTVAENLTVEI---PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH 61 (265)
T ss_pred EEEEECCEEEeeecceEE---CCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 333455545788889998 6777 99999999999999999999998764
No 285
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.92 E-value=3.1e-10 Score=108.00 Aligned_cols=149 Identities=16% Similarity=0.116 Sum_probs=84.6
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+. .+..+... .+ ....+..+
T Consensus 19 ~l~~~~~~~~~l~~vsl~i---~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--~~--~~r~ig~v 91 (375)
T PRK09452 19 GISKSFDGKEVISNLDLTI---NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV--PA--ENRHVNTV 91 (375)
T ss_pred EEEEEECCeEEEeeeEEEE---eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC--CH--HHCCEEEE
Confidence 4444566555677888888 6777 9999999999999999999999886532 12222110 01 11234444
Q ss_pred hhccccchhhhhcccccc-CC---CCCc-----hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMVD-LP---LGAT-----EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~~---~~~~-----~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~ 172 (369)
||....++..++..++.. .. .... .......+++. ..+++|+.+.. .+.....+|.+++||||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 555545544444322210 00 0000 01122222222 22334443211 12222238999999999
Q ss_pred -CCCCHHHHHHHHHHHhc
Q 017575 173 -NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~~ 189 (369)
..+|......|++.|.+
T Consensus 172 ~s~LD~~~r~~l~~~L~~ 189 (375)
T PRK09452 172 LSALDYKLRKQMQNELKA 189 (375)
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 89999999888888864
No 286
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.92 E-value=4.8e-10 Score=95.48 Aligned_cols=120 Identities=27% Similarity=0.311 Sum_probs=70.1
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+.+.+ ..|. +.|+||+|+|||||+++|+++.++..+.. +.+... .........+...++....++
T Consensus 16 ~~l~~~~~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~~~i~~~~q~~~~~~- 89 (173)
T cd03246 16 PVLRNVSFSI---EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ--WDPNELGDHVGYLPQDDELFS- 89 (173)
T ss_pred cceeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEccc--CCHHHHHhheEEECCCCcccc-
Confidence 3667777887 6777 99999999999999999999997764211 111110 001111111111111111000
Q ss_pred hhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 119 TFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
. .+...+ +++|+.. ..-+.....+|.++++||| +.+|+.....+.+++.+
T Consensus 90 ------------~----tv~~~l-----LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 90 ------------G----SIAENI-----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred ------------C----cHHHHC-----cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 0 011010 3455543 2223333348999999999 79999999999998865
No 287
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.92 E-value=2.7e-10 Score=108.50 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=78.9
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
+..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+. .+.+.... .+ ....+..++|
T Consensus 10 ~~~~~~~~vl~~vsl~i---~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~--~~--~~~~i~~v~Q 82 (369)
T PRK11000 10 TKAYGDVVISKDINLDI---HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV--PP--AERGVGMVFQ 82 (369)
T ss_pred EEEeCCeEEEeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC--CH--hHCCEEEEeC
Confidence 33445445677888888 6777 9999999999999999999999876532 12122110 00 0112233333
Q ss_pred ccccchhhhhcccccc----CCCCC-----chHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-C
Q 017575 112 KGEELSITFSKINMVD----LPLGA-----TEDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~ 173 (369)
....++..++...+.. ..... ....+...+++. ..+++|+.+.. .+.....+|.+++|||| .
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3333332222211110 00000 001112222222 22344443211 12222238999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+.....+++.|.+
T Consensus 163 ~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 163 NLDAALRVQMRIEISR 178 (369)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999888888764
No 288
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=3.2e-10 Score=99.05 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=71.9
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC---cceeec---CCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP---VIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
..+++.+.+.+ ..|. +.|+||+|+|||||+++|++..+ +..+.. +.+.... .......+...++...
T Consensus 20 ~~il~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~---~~~~~~~i~~~~q~~~ 93 (202)
T cd03233 20 IPILKDFSGVV---KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF---AEKYPGEIIYVSEEDV 93 (202)
T ss_pred ceeeeeEEEEE---CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc---hhhhcceEEEEecccc
Confidence 34677888888 6777 99999999999999999999987 443211 1111100 0001111112222111
Q ss_pred cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 115 ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.++..++...+. .... . ..-.....+++|+.. ..-+.....+|.++++||| ..+|+..+..+.+++.+
T Consensus 94 ~~~~~tv~~~l~-~~~~-----~-~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 94 HFPTLTVRETLD-FALR-----C-KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred cCCCCcHHHHHh-hhhh-----h-ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 111111111100 0000 0 000111223444432 1222223348999999999 89999999999998875
No 289
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.92 E-value=3.3e-10 Score=108.52 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=40.6
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+|+|++++++.+
T Consensus 8 nls~~y~~~~vL~~vs~~i---~~Geiv~liGpNGaGKSTLLk~LaGll~p~s 57 (402)
T PRK09536 8 DLSVEFGDTTVLDGVDLSV---REGSLVGLVGPNGAGKTTLLRAINGTLTPTA 57 (402)
T ss_pred eEEEEECCEEEEEeeEEEE---CCCCEEEEECCCCchHHHHHHHHhcCCCCCC
Confidence 3444456656788889998 7888 89999999999999999999998765
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=5.9e-10 Score=94.76 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=70.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..+.. +.+... .........+...++....+
T Consensus 16 ~~l~~i~~~i---~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~--~~~~~~~~~i~~~~~~~~~~-- 88 (171)
T cd03228 16 PVLKDVSLTI---KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD--LDLESLRKNIAYVPQDPFLF-- 88 (171)
T ss_pred ccccceEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhh--cCHHHHHhhEEEEcCCchhc--
Confidence 4677888888 6777 99999999999999999999997654211 111100 00000011111111111000
Q ss_pred hhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 119 TFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+ . .+...+ +++|+.+ ...+.....+|.++++||| +.+|+.....+.+++.+
T Consensus 89 ----------~-~----t~~e~l-----LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 89 ----------S-G----TIRENI-----LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred ----------c-c----hHHHHh-----hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 0 0 111000 4455543 2222223348999999999 79999999999999875
No 291
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.4e-09 Score=94.52 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++-.++.+.++..++-.+ +.|. ..|+||||+|||||++.+++..++.+
T Consensus 36 ~v~v~r~gk~iL~~isW~V---~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss 85 (257)
T COG1119 36 NVSVRRNGKKILGDLSWQV---NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS 85 (257)
T ss_pred ceEEEECCEeeccccceee---cCCCcEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 3444567888999999999 6776 99999999999999999999998864
No 292
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=7.6e-10 Score=99.46 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=37.2
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
-++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 12 ~~~~~~~l~~~sl~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 57 (241)
T PRK10895 12 AYKGRRVVEDVSLTV---NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA 57 (241)
T ss_pred EeCCEEEEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344445677888888 6777 99999999999999999999998764
No 293
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.91 E-value=1.3e-09 Score=110.96 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=87.5
Q ss_pred cccChH--HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCC-CCCCCCCCcchhhhhhhhhhhc
Q 017575 37 AIVGQE--EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGD-PYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 37 ~i~G~~--~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
.-|+.+ .+++.+++.+ .+|. +.|+|++|||||||+|.+.++..+..+.... .......+...++..+..+.|.
T Consensus 479 f~y~~~~~~vL~~isL~I---~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 479 FRYGPDDPPVLEDLSLEI---PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred EEeCCCCcchhhceeEEe---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 335554 5899999999 7777 9999999999999999999999987632211 1222233444555555544443
Q ss_pred cccchhhhhccccccCCCCCchHhh------hcccchhH---------------Hhhhcccc-cccchhhhcCCCeEEEe
Q 017575 113 GEELSITFSKINMVDLPLGATEDRV------CGTIDIEK---------------ALTEGVKA-FEPGLLAKANRGILYVD 170 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---------------~~~~g~~~-~~~g~~~~a~~~vl~lD 170 (369)
...+. .++..++-......+.+.+ .|..+... .++||++. ..-.+....+|.|+++|
T Consensus 556 ~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 556 PFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred chhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 33222 2222222222222222222 12222221 23444432 11222333489999999
Q ss_pred CC-CCCCHHHHHHHHHHHhc
Q 017575 171 EV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 171 E~-~~l~~~~~~~L~~~l~~ 189 (369)
|+ ..+|++....+.+.|.+
T Consensus 635 EaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 635 EATSALDPETEAIILQNLLQ 654 (709)
T ss_pred CcccccCHhHHHHHHHHHHH
Confidence 99 89999988888887765
No 294
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=5.5e-10 Score=101.17 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=36.9
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 11 ~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 55 (255)
T PRK11248 11 YGGKPALEDINLTL---ESGELLVVLGPSGCGKTTLLNLIAGFVPYQH 55 (255)
T ss_pred eCCeeeEeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 44445677888888 6777 99999999999999999999997764
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.90 E-value=2.3e-10 Score=97.98 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=69.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFS 121 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..+....+-.............+...++....+
T Consensus 16 ~~l~~i~~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~----- 87 (178)
T cd03247 16 QVLKNLSLEL---KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLF----- 87 (178)
T ss_pred cceEEEEEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeee-----
Confidence 4677788888 6777 999999999999999999999976542111000000000000001111111111000
Q ss_pred ccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 122 KINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+ ....+.+ ...+++|+.+ ...+.....+|.++++||| +.+|+.....+++.+.+
T Consensus 88 -------~-~tv~~~i------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 88 -------D-TTLRNNL------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred -------c-ccHHHhh------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0 0011111 1223444432 1122223348999999999 79999999999999975
No 296
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.90 E-value=6.7e-10 Score=99.90 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=36.8
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||||+|||||+++|++..++.+
T Consensus 12 ~~~~~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 56 (242)
T TIGR03411 12 FDGFKALNDLSLYV---DPGELRVIIGPNGAGKTTMMDVITGKTRPDE 56 (242)
T ss_pred cCCeEEeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 44444677888888 6777 89999999999999999999987764
No 297
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-08 Score=94.89 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=86.6
Q ss_pred CCccccChHHHHHHhhhhhccCC--------CC-----eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPK--------IG-----GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPE 100 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~--------~g-----~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 100 (369)
.|..+.=....++.|.-.+..+. .| ++||+||||||||+++-+||..+.-+ +-.......
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd-------IydLeLt~v 271 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD-------IYDLELTEV 271 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCc-------eEEeeeccc
Confidence 56666655566666655543211 11 39999999999999999999999522 111111011
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC-C---
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-D--- 176 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l-~--- 176 (369)
...+++ ..=+....+..|++|.+++.. +
T Consensus 272 ~~n~dL------------------------------------------------r~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 272 KLDSDL------------------------------------------------RHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cCcHHH------------------------------------------------HHHHHhCCCCcEEEEeeccccccccc
Confidence 111111 111112234457777777322 1
Q ss_pred --------------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 177 --------------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 177 --------------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
.-..+-|+..++ |..-.+...=.+|+|+|- ..+++|||++ |.+++|.+.+= ..
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiD---------GlwSscg~ERIivFTTNh-~EkLDPALlRpGRmDmhI~mgyC-tf 372 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLD---------GLWSSCGDERIIVFTTNH-KEKLDPALLRPGRMDMHIYMGYC-TF 372 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhc---------cccccCCCceEEEEecCC-hhhcCHhhcCCCcceeEEEcCCC-CH
Confidence 113445666554 333333334456778884 3469999999 99999999988 56
Q ss_pred HHHHHHHHHh
Q 017575 241 ELRVKIVEER 250 (369)
Q Consensus 241 ~~~~~il~~~ 250 (369)
+....++...
T Consensus 373 ~~fK~La~nY 382 (457)
T KOG0743|consen 373 EAFKTLASNY 382 (457)
T ss_pred HHHHHHHHHh
Confidence 7776665543
No 298
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=5e-10 Score=102.32 Aligned_cols=49 Identities=31% Similarity=0.357 Sum_probs=41.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..-+|...+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 29 ~~~~~~~~~~il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~ 78 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDV---REGEIFVIMGLSGSGKSTLLRCINRLIEPTS 78 (269)
T ss_pred hhhhhcCCceEeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4445567767788889998 7777 99999999999999999999998765
No 299
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=2.5e-09 Score=90.85 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=43.7
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.|++..++.+.+++.+++.+ ..|. +.|+||||+||||++|.+++.+.++.
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~---~pGev~ailGPNGAGKSTlLk~LsGel~p~~ 55 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDL---RPGEVLAILGPNGAGKSTLLKALSGELSPDS 55 (259)
T ss_pred eeeEEEeecceeccCcceec---cCCcEEEEECCCCccHHHHHHHhhCccCCCC
Confidence 35666777888999999998 7888 88999999999999999999998765
No 300
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=5e-10 Score=101.51 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=37.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 14 ~~~~~~~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 59 (255)
T PRK11300 14 RFGGLLAVNNVNLEV---REQEIVSLIGPNGAGKTTVFNCLTGFYKPTG 59 (255)
T ss_pred EECCEEEEEeeeeEE---cCCeEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 344445677888888 6777 99999999999999999999998765
No 301
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.90 E-value=3.7e-10 Score=106.82 Aligned_cols=145 Identities=22% Similarity=0.203 Sum_probs=80.9
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchh----hhhhhhhhh
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAM----GIEVRESVV 111 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~ 111 (369)
|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+.. +.++.. ..+... ...+..++|
T Consensus 4 ~~~~~l~~vs~~i---~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~--~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 4 GGKKGVNDADLAI---AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK--QSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CCceeEEeeEEEE---cCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc--CCHHHHHHHHhCcEEEEEC
Confidence 4445677788888 7787 99999999999999999999998875321 222211 111111 223444455
Q ss_pred ccccchhhhhcccccc----CCCCC--ch---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-C
Q 017575 112 KGEELSITFSKINMVD----LPLGA--TE---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~----~~~~~--~~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~ 173 (369)
....+++.++..++.. ..... .. ..+...+++. ..+++|+.+.. .+...-.+|.++++||| .
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 5444444443322110 00000 01 1112222222 22233332211 11112238999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+.....+.+.+.+
T Consensus 159 aLD~~~r~~l~~~l~~ 174 (363)
T TIGR01186 159 ALDPLIRDSMQDELKK 174 (363)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999998888888764
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.90 E-value=4.4e-08 Score=95.72 Aligned_cols=212 Identities=21% Similarity=0.234 Sum_probs=123.3
Q ss_pred CCccccChHHHHHHhhhhhccC-----CCCe-eEEecCCCCChhHHHHHHHhccCcce-e-ecC----CCCCCCCCC---
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDP-----KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK-V-VVG----DPYNSDPED--- 98 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~-----~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~-~-~~~----~~~~~~~~~--- 98 (369)
-|.+++|.+++++.+...+... ..+. ++|+||||+|||+|++.|+..+.... + ..+ +|....+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p 153 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFD 153 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCC
Confidence 4788999999988876655110 1222 99999999999999999999886543 1 111 222111111
Q ss_pred cchhh---hhhhhh----------------hh-ccccchhhhhcc---------ccccCCC----CCchHhhhcccchhH
Q 017575 99 PEAMG---IEVRES----------------VV-KGEELSITFSKI---------NMVDLPL----GATEDRVCGTIDIEK 145 (369)
Q Consensus 99 ~~~~~---~~~~~~----------------~~-~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~ 145 (369)
+.... .+.+++ +. ++..+..-.+.. .+..... .+....+.|..++..
T Consensus 154 ~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~vdi~k 233 (644)
T PRK15455 154 PDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKVDIRK 233 (644)
T ss_pred hhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccceeHHh
Confidence 11000 000110 00 111111100000 0001111 123446677777654
Q ss_pred Hhhhc---ccccc-cchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC----
Q 017575 146 ALTEG---VKAFE-PGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE---- 217 (369)
Q Consensus 146 ~~~~g---~~~~~-~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~---- 217 (369)
...-. ...+. .|-+..++.|++=+=|+-+.|.+....|+.+.+++.+... +.....+.+-.+||.+|...
T Consensus 234 l~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E~~~F 311 (644)
T PRK15455 234 LEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESEWQTF 311 (644)
T ss_pred hhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHHHHHH
Confidence 32211 22233 5778888888877779999999999999999999876443 23334566788999999543
Q ss_pred --CCCCHhHHhhhccceeecCCCCHHHHHHHHH
Q 017575 218 --GELRPQLLDRFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 218 --~~l~~al~~R~~~~i~~~~~~~~~~~~~il~ 248 (369)
.+--+||+||+-+ |.+|+-..-....+|-.
T Consensus 312 ~~nk~nEA~~DRi~~-V~VPY~lr~~eE~kIYe 343 (644)
T PRK15455 312 RNNKNNEAFLDRIYI-VKVPYCLRVSEEIKIYE 343 (644)
T ss_pred hcCccchhhhceEEE-EeCCccCChhHHHHHHH
Confidence 2356999999976 88988765455555543
No 303
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.90 E-value=9.6e-10 Score=108.31 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=77.8
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee--ecCCCCCCCCCCc---ch-hhhhhhhhhhccc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV--VVGDPYNSDPEDP---EA-MGIEVRESVVKGE 114 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 114 (369)
..+.+.+++.+ .+|. |.|+||||+|||||+|.|++.+.+..+ ..+.....-..++ .. ....+...+....
T Consensus 335 ~~l~~~~s~~i---~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 335 RLLLKDLSFRI---DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred ceeecCceEEe---cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhC
Confidence 35677788887 5676 999999999999999999998877642 1122211100000 00 0001111111110
Q ss_pred -cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 115 -ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
......++..+-.+.|..... ......++||++. +.-+.+...+|++++|||| |.||.+.+.+|-+.|.+
T Consensus 412 ~~~~e~~~r~~L~~f~F~~~~~-----~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 412 PDGDEQEVRAYLGRFGFTGEDQ-----EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred ccccHHHHHHHHHHcCCChHHH-----hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh
Confidence 000011111111111111100 1112445677753 3345555568999999999 99999999999999986
No 304
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.90 E-value=5.2e-10 Score=98.66 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|+ +.|+||+|+|||||+++|++..++..
T Consensus 14 ~~~l~~~sl~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (214)
T cd03292 14 TAALDGINISI---SAGEFVFLVGPSGAGKSTLLKLIYKEELPTS 55 (214)
T ss_pred ceeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 34677888888 6777 89999999999999999999997765
No 305
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.89 E-value=9.3e-10 Score=99.28 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=36.9
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.
T Consensus 10 ~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 10 FYGEKEALKNINLDI---PKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred EECCeeeecceeEEE---CCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 344445778888888 7787 9999999999999999999999764
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.89 E-value=4.7e-10 Score=94.57 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
++...+.+.+.+.+ ..|. +.|+||+|+|||||+++|+++.++..+.....-....... ......
T Consensus 10 ~~~~~vl~~i~~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~---~~~~~~--------- 74 (163)
T cd03216 10 FGGVKALDGVSLSV---RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS---PRDARR--------- 74 (163)
T ss_pred ECCeEEEeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC---HHHHHh---------
Confidence 34334677778888 6777 9999999999999999999999875421110000000000 000000
Q ss_pred hhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 118 ITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.. .+.. ..+++|+.+ ...+.....+|.++++||| +.+|+.....+.+.+.+
T Consensus 75 -----~~-------------i~~~---~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 75 -----AG-------------IAMV---YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----cC-------------eEEE---EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 00 0000 002344432 2222223347899999999 79999999999999875
No 307
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=5e-10 Score=100.74 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=38.1
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.-++...+++.+++.+ ..|. +.|+||+|+|||||+++|++..++..
T Consensus 10 ~~~~~~~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (242)
T PRK11124 10 CFYGAHQALFDITLDC---PQGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56 (242)
T ss_pred EEECCeeeEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3345555778888888 6777 99999999999999999999997765
No 308
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.89 E-value=4.8e-10 Score=101.45 Aligned_cols=45 Identities=33% Similarity=0.447 Sum_probs=37.5
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 9 ~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (252)
T TIGR03005 9 RFGILTVLDGLNFSV---AAGEKVALIGPSGSGKSTILRILMTLEPIDE 54 (252)
T ss_pred EeCCeeEEeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345445677888888 7787 99999999999999999999998764
No 309
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.89 E-value=4.5e-10 Score=99.56 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=34.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 19 ~~l~~isl~i---~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~ 59 (221)
T TIGR02211 19 RVLKGVSLSI---GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS 59 (221)
T ss_pred EeEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4677888888 6777 99999999999999999999998765
No 310
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.89 E-value=6.3e-10 Score=100.58 Aligned_cols=48 Identities=27% Similarity=0.298 Sum_probs=39.0
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 9 l~~~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 57 (250)
T PRK11264 9 LVKKFHGQTVLHGIDLEV---KPGEVVAIIGPSGSGKTTLLRCINLLEQPEA 57 (250)
T ss_pred eEEEECCeeeeccceEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 333445445788888888 7787 99999999999999999999987654
No 311
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=8.6e-10 Score=100.90 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=38.3
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 10 ~~~~~~il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 55 (271)
T PRK13638 10 RYQDEPVLKGLNLDF---SLSPVTGLVGANGCGKSTLFMNLSGLLRPQK 55 (271)
T ss_pred EcCCcccccceEEEE---cCCCEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence 345455788889998 7777 99999999999999999999998765
No 312
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.88 E-value=5e-10 Score=105.88 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=80.5
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhhc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++.++. .+.++... ......+...+|.
T Consensus 10 ~~~~~~~~l~~isl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~----~~~~r~i~~v~Q~ 82 (353)
T PRK10851 10 KSFGRTQVLNDISLDI---PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL----HARDRKVGFVFQH 82 (353)
T ss_pred EEeCCeEEEEEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CHHHCCEEEEecC
Confidence 3345545677788888 6777 9999999999999999999999876532 12222110 0111233444444
Q ss_pred cccchhhhhcccccc-CCC-----CCc----h---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeC
Q 017575 113 GEELSITFSKINMVD-LPL-----GAT----E---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDE 171 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~-~~~-----~~~----~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE 171 (369)
...++..++..++.. ... ... . ..+...+++. ..+++|+.+.. .+.....+|.++++||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444443333222110 000 000 0 1112222222 22333332211 1111223899999999
Q ss_pred C-CCCCHHHHHHHHHHHhc
Q 017575 172 V-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 172 ~-~~l~~~~~~~L~~~l~~ 189 (369)
| ..+|+.....+++.|.+
T Consensus 163 P~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 163 PFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred CCccCCHHHHHHHHHHHHH
Confidence 9 89999999999888865
No 313
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=2e-08 Score=100.80 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=39.2
Q ss_pred CCCCccccChHHHHHHhhhhhcc----CCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVID----PKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~----~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+..+++++|+++.++.+...+.. ...++ ++|+|||||||||+++++++.+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34899999999876665544321 12344 99999999999999999999885
No 314
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.88 E-value=5.6e-10 Score=99.39 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=34.6
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.
T Consensus 10 ~~~~~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 10 YGDKHALKDISLDI---PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCceeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45445778888888 6777 9999999999999999999998
No 315
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.88 E-value=3.8e-10 Score=106.94 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=82.9
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce--eecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK--VVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
++..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++.. +.....-..... .......+..++|
T Consensus 11 l~~~~~~~~~l~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~-~~~~~r~ig~vfQ 86 (362)
T TIGR03258 11 LRVAYGANTVLDDLSLEI---EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH-APPHKRGLALLFQ 86 (362)
T ss_pred EEEEECCeEEEeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCC-CCHHHCCEEEEEC
Confidence 334455545677888888 6777 99999999999999999999998765 422111101100 0011123444455
Q ss_pred ccccchhhhhccccc------cCCCCC---chHhhhcccchh-------HHhhhccccc-ccchhhhcCCCeEEEeCC-C
Q 017575 112 KGEELSITFSKINMV------DLPLGA---TEDRVCGTIDIE-------KALTEGVKAF-EPGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~-------~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~ 173 (369)
....++..++..++. ..+... ....+...+++. ..+++|+.+. ..+.....+|.+++|||| .
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s 166 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 544444444332211 000000 011112222221 2233443321 122222238999999999 8
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+.....|++.|.+
T Consensus 167 ~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 167 ALDANIRANMREEIAA 182 (362)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988864
No 316
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=7.5e-10 Score=100.96 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=37.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
-++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 20 ~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 65 (265)
T PRK10575 20 RVPGRTLLHPLSLTF---PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE 65 (265)
T ss_pred EECCEEEEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 345445788888888 6777 99999999999999999999987654
No 317
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=2.1e-09 Score=94.55 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=31.7
Q ss_pred HhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 47 CLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 47 ~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 16 ~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~ 52 (211)
T cd03298 16 HFDLTF---AQGEITAIVGPSGSGKSTLLNLIAGFETPQS 52 (211)
T ss_pred ceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 677777 6777 99999999999999999999998765
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.87 E-value=2.7e-09 Score=87.32 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=77.0
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee---ecCCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV---VVGDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..++..+++++ ..|. ++|+||+|||||||.|.++.+.++..+ +.|.+++.. .++..+..+.+..|...++.
T Consensus 16 a~il~~isl~v---~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~--~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 16 AKILNNISLSV---RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--KPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred Ceeecceeeee---cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc--ChHHHHHHHHHHHcCccccc
Confidence 34577888888 6777 999999999999999999999988752 334444332 45555555555444333221
Q ss_pred hhhhcccccc---CCCCCchHh----hhcccc--------hhHHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCHHHH
Q 017575 118 ITFSKINMVD---LPLGATEDR----VCGTID--------IEKALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDDHLV 180 (369)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~~~----~~~~~~--------~~~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~~~~ 180 (369)
.+++.++.- ...+.+... +....+ -...++||+.... .-.-.+.-|.|++|||+ ..+|+...
T Consensus 91 -~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 91 -DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred -cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 122211110 001111110 000001 1134556654322 11112236899999999 67787655
Q ss_pred HHHHHHH
Q 017575 181 DVLLDSA 187 (369)
Q Consensus 181 ~~L~~~l 187 (369)
..+-.++
T Consensus 170 r~ie~mi 176 (223)
T COG4619 170 RNIEEMI 176 (223)
T ss_pred HHHHHHH
Confidence 4444443
No 319
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.87 E-value=1.6e-09 Score=96.34 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=39.3
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 13 l~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 61 (225)
T PRK10247 13 VGYLAGDAKILNNISFSL---RAGEFKLITGPSGCGKSTLLKIVASLISPTS 61 (225)
T ss_pred cEEeeCCceeeeccEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 333455555788889998 7787 99999999999999999999987664
No 320
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=5.9e-10 Score=100.27 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 14 ~~~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (242)
T cd03295 14 KKAVNNLNLEI---AKGEFLVLIGPSGSGKTTTMKMINRLIEPTS 55 (242)
T ss_pred ceEeeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 34677888888 7777 99999999999999999999998765
No 321
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.87 E-value=7.5e-10 Score=99.16 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=37.0
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 31 ~~~~~il~~vs~~i---~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~ 75 (236)
T cd03267 31 YREVEALKGISFTI---EKGEIVGFIGPNGAGKTTTLKILSGLLQPTS 75 (236)
T ss_pred cCCeeeeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 34555778888888 6777 99999999999999999999987764
No 322
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=7.4e-10 Score=100.42 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=38.2
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 9 ~~~~~~~~il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 56 (255)
T PRK11231 9 TVGYGTKRILNDLSLSL---PTGKITALIGPNGCGKSTLLKCFARLLTPQS 56 (255)
T ss_pred EEEECCEEEEeeeeeEE---cCCcEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 33345445677888888 7787 99999999999999999999987654
No 323
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.5e-09 Score=97.59 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=37.1
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 13 ~~~~~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 57 (241)
T PRK14250 13 SFGKEILKDISVKF---EGGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57 (241)
T ss_pred eCCeeeeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 44445678888888 6777 99999999999999999999998765
No 324
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=6.1e-10 Score=99.59 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=35.1
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 23 ~il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 63 (233)
T PRK11629 23 DVLHNVSFSI---GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63 (233)
T ss_pred eeEEeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4677888888 6777 99999999999999999999997765
No 325
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.86 E-value=6.5e-10 Score=96.47 Aligned_cols=127 Identities=18% Similarity=0.156 Sum_probs=71.6
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc--Ccceeec---CCCCCCCCCCcchhhhhhhhhhhcccc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL--PVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEE 115 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
..+++.+++.+ ..|. ++|+||+|+|||||+++|+++. ++..+.. +.+.. .......+...++....
T Consensus 22 ~~~l~~~~~~i---~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~-----~~~~~~~i~~~~q~~~~ 93 (194)
T cd03213 22 KQLLKNVSGKA---KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD-----KRSFRKIIGYVPQDDIL 93 (194)
T ss_pred ccceecceEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc-----hHhhhheEEEccCcccC
Confidence 45788888888 6777 9999999999999999999998 6654211 11111 00011111111111111
Q ss_pred chhhhhccccccCCCCCchHhhhcccchhHHhhhccccc-ccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 116 LSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAF-EPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
++..++. +.+.-.. ....+++|+... ..+.....+|.++++||| +.+|+..+..+++.|.+
T Consensus 94 ~~~~t~~------------~~i~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 94 HPTLTVR------------ETLMFAA-KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred CCCCcHH------------HHHHHHH-HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 1111110 0000000 000234554331 222233348999999999 89999999999999875
No 326
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.86 E-value=8.7e-09 Score=84.29 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=44.0
Q ss_pred hhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc
Q 017575 159 LAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM 230 (369)
Q Consensus 159 ~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~ 230 (369)
+..+++++++|+|++.++++.|..|.+.++... ..++.+|+++.... +.+++.|..||..
T Consensus 65 l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~ 130 (138)
T PF14532_consen 65 LEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE------------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQ 130 (138)
T ss_dssp HHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT------------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCST
T ss_pred HHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC------------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCC
Confidence 334578999999999999999999999998621 23556777766433 2377889999874
No 327
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.86 E-value=1e-09 Score=97.37 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=35.9
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+...+++.+++.+ ..|. ++|+||||+|||||+++|++.+++..
T Consensus 11 ~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (223)
T TIGR03740 11 GKQTAVNNISLTV---PKNSVYGLLGPNGAGKSTLLKMITGILRPTS 54 (223)
T ss_pred CCEEEEeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3334677788887 6777 99999999999999999999998765
No 328
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=8.3e-10 Score=105.18 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=82.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..+|...+++.+++.+ ..|. +.|+||+|||||||+++|+++.++..+. .+..+... + .....+..+
T Consensus 24 ~v~~~~~~~~~l~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---~-~~~r~ig~v 96 (377)
T PRK11607 24 NLTKSFDGQHAVDDVSLTI---YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV---P-PYQRPINMM 96 (377)
T ss_pred eEEEEECCEEEEeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---C-HHHCCEEEE
Confidence 3444455545677788888 6777 8999999999999999999999887532 12222111 1 112234455
Q ss_pred hhccccchhhhhcccccc-C---CCCC--ch---Hhhhcccchh-------HHhhhccccc-ccchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMVD-L---PLGA--TE---DRVCGTIDIE-------KALTEGVKAF-EPGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~---~~~~--~~---~~~~~~~~~~-------~~~~~g~~~~-~~g~~~~a~~~vl~lDE~ 172 (369)
+|....+++.++..++.. . .... .. ..+...+++. ..+++|+.+. ..+.....+|.+++||||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 555555555444322210 0 0000 01 1122222222 2233443321 122222238999999999
Q ss_pred -CCCCHHHHHHHHHHHh
Q 017575 173 -NLLDDHLVDVLLDSAA 188 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~ 188 (369)
..+|......+.+.+.
T Consensus 177 ~s~LD~~~r~~l~~~l~ 193 (377)
T PRK11607 177 MGALDKKLRDRMQLEVV 193 (377)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 8999998888876664
No 329
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.2e-09 Score=98.05 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=37.6
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 15 ~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 59 (237)
T PRK11614 15 YGKIQALHEVSLHI---NQGEIVTLIGANGAGKTTLLGTLCGDPRATS 59 (237)
T ss_pred eCCceeeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 44455788888888 7787 99999999999999999999998765
No 330
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.4e-09 Score=96.44 Aligned_cols=142 Identities=25% Similarity=0.236 Sum_probs=80.6
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. ++|+|+|||||||+++.+++++++..+.. +.++.. ......+......+||.....-+
T Consensus 18 ~~l~~v~~~i---~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~-~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 18 AALKDVSLEI---EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS-EKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred eeeeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc-hhhHHHhhcceEEEEECcccccc
Confidence 5678888888 6776 99999999999999999999999875321 111110 11222334445555554432211
Q ss_pred -hhhccccc-c-CCCCCchH----hh------hccc----chhHHhhhcccccc--cchhhhcCCCeEEEeCC-CCCCHH
Q 017575 119 -TFSKINMV-D-LPLGATED----RV------CGTI----DIEKALTEGVKAFE--PGLLAKANRGILYVDEV-NLLDDH 178 (369)
Q Consensus 119 -~~~~~~~~-~-~~~~~~~~----~~------~~~~----~~~~~~~~g~~~~~--~g~~~~a~~~vl~lDE~-~~l~~~ 178 (369)
.++...+. . .......+ +. .+.. .....+++|+++.. .+.++ .+|.++++||| ..+|+.
T Consensus 94 ~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa-~~P~iliLDEPta~LD~~ 172 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-MGPEILLLDEPTAGLDPK 172 (235)
T ss_pred cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH-cCCCEEEEcCCCCCCCHH
Confidence 11111100 0 00111111 11 1110 11133456665432 23333 37999999999 799999
Q ss_pred HHHHHHHHHhc
Q 017575 179 LVDVLLDSAAS 189 (369)
Q Consensus 179 ~~~~L~~~l~~ 189 (369)
....+++.+.+
T Consensus 173 ~~~~l~~~l~~ 183 (235)
T COG1122 173 GRRELLELLKK 183 (235)
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 331
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.85 E-value=1.9e-09 Score=96.05 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=35.4
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 19 ~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 59 (228)
T cd03257 19 KALDDVSFSI---KKGETLGLVGESGSGKSTLARAILGLLKPTS 59 (228)
T ss_pred eeecCceeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4678888888 7787 99999999999999999999998765
No 332
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=1.3e-09 Score=97.13 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 17 ~~l~~isl~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 57 (229)
T cd03254 17 PVLKDINFSI---KPGETVAIVGPTGAGKTTLINLLMRFYDPQK 57 (229)
T ss_pred ccccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 4788888888 7787 99999999999999999999998764
No 333
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.85 E-value=7.9e-10 Score=101.00 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=38.6
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.-++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 13 l~~~~~~~~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 61 (269)
T PRK11831 13 VSFTRGNRCIFDNISLTV---PRGKITAIMGPSGIGKTTLLRLIGGQIAPDH 61 (269)
T ss_pred eEEEECCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 333345445677888888 6777 99999999999999999999997754
No 334
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.85 E-value=4.3e-09 Score=103.59 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=85.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCC-C---CCCCCcchhhhhhhhhhhcccc--
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPY-N---SDPEDPEAMGIEVRESVVKGEE-- 115 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-- 115 (369)
..++.+.+.+ ..|+ ++|.||+|||||+|.|+|++++|..++....|- . ..+..|-...-.+...+-+...
T Consensus 407 ~ll~~l~~~v---~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 407 TLLSELNFEV---RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred eeeccceeee---CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 3466667777 6676 999999999999999999999997654322221 0 0111111111122222211111
Q ss_pred -chhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 116 -LSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 116 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
++...+..-+.....+.-.+++.+..+....+++|+.+ ..-..+...+|.++||||. +.+|++.+..+++.+++
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 11111111122223333333444444555666777754 3345555568999999999 89999999999999987
No 335
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.85 E-value=1.4e-09 Score=98.99 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=37.8
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
+..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.
T Consensus 11 ~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 11 AKTFNQHQALHAVDLNI---HHGEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred EEEeCCeEEEecceEEE---cCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 33345555788888888 6777 9999999999999999999999754
No 336
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.85 E-value=3.1e-09 Score=95.98 Aligned_cols=47 Identities=30% Similarity=0.445 Sum_probs=38.1
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+..++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++.+
T Consensus 11 ~~~~~~~~vl~~vs~~i---~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~ 58 (251)
T PRK09544 11 SVSFGQRRVLSDVSLEL---KPGKILTLLGPNGAGKSTLVRVVLGLVAPDE 58 (251)
T ss_pred EEEECCceEEEeEEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 33345445677788888 6777 99999999999999999999998765
No 337
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=5.6e-09 Score=93.27 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=71.2
Q ss_pred HhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhhccccchhhhhc
Q 017575 47 CLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSK 122 (369)
Q Consensus 47 ~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (369)
.+++.+ ..|. +.|+||||+|||||+++|+++.++..+. .+.+..... . ....+...++....++..++.
T Consensus 17 ~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~--~~~~i~~~~q~~~~~~~~tv~ 89 (232)
T PRK10771 17 RFDLTV---ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP--P--SRRPVSMLFQENNLFSHLTVA 89 (232)
T ss_pred eeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC--h--hhccEEEEecccccccCCcHH
Confidence 567777 6777 9999999999999999999999876531 111111100 0 011122222222222211211
Q ss_pred ccccc---CCCC-C-c----hHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-CCCCHHHHHHHH
Q 017575 123 INMVD---LPLG-A-T----EDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV-NLLDDHLVDVLL 184 (369)
Q Consensus 123 ~~~~~---~~~~-~-~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~-~~l~~~~~~~L~ 184 (369)
..+.. .... . . ...+...+++..........+..|..++ .+|.++++||| ..+|+..+..+.
T Consensus 90 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~ 169 (232)
T PRK10771 90 QNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169 (232)
T ss_pred HHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11100 0000 0 0 1122223333222222222233333222 38999999999 899999999999
Q ss_pred HHHhc
Q 017575 185 DSAAS 189 (369)
Q Consensus 185 ~~l~~ 189 (369)
+++.+
T Consensus 170 ~~l~~ 174 (232)
T PRK10771 170 TLVSQ 174 (232)
T ss_pred HHHHH
Confidence 88875
No 338
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.84 E-value=1.3e-09 Score=97.02 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=34.6
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 25 ~l~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~ 64 (228)
T PRK10584 25 ILTGVELVV---KRGETIALIGESGSGKSTLLAILAGLDDGSS 64 (228)
T ss_pred EEeccEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 677888888 6777 99999999999999999999997765
No 339
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.84 E-value=2.3e-09 Score=97.29 Aligned_cols=45 Identities=31% Similarity=0.398 Sum_probs=37.7
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 11 ~~~~~~il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~ 56 (258)
T PRK13548 11 RLGGRTLLDDVSLTL---RPGEVVAILGPNGAGKSTLLRALSGELSPDS 56 (258)
T ss_pred EeCCeeeeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345455778888888 6777 99999999999999999999987764
No 340
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.84 E-value=1.3e-09 Score=93.53 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=70.1
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchhh
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSIT 119 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
+.+.+++.+ ..|. +.|+||+|+|||||+++|++..++..+.. +.+..... ........+...++....
T Consensus 15 ~l~~vs~~i---~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~~~q~~~~---- 86 (182)
T cd03215 15 AVRDVSFEV---RAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS-PRDAIRAGIAYVPEDRKR---- 86 (182)
T ss_pred eecceEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC-HHHHHhCCeEEecCCccc----
Confidence 566777777 6777 99999999999999999999998765311 11111100 000011111111111000
Q ss_pred hhccccccCCCCCchHhhhcccchhHHhhhccccc-ccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 120 FSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAF-EPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
....+.....+.+. ....+++|+.+. .-+.....+|.++++||| +.+|+.....+.+.+.+
T Consensus 87 -----~~~~~~~t~~e~l~----~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 87 -----EGLVLDLSVAENIA----LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred -----CcccCCCcHHHHHH----HHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 00000001111110 001145555432 223333348999999999 89999999999998875
No 341
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=1.7e-09 Score=95.45 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=35.4
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.-+|...+ .+++.+ .. . +.|+||+|+|||||+++|++++++.+
T Consensus 6 l~~~~~~~~~--~vsl~i---~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~ 51 (214)
T cd03297 6 IEKRLPDFTL--KIDFDL---NE-EVTGIFGASGAGKSTLLRCIAGLEKPDG 51 (214)
T ss_pred eeEecCCeee--CceEEE---cc-eeEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3344555433 777777 56 6 99999999999999999999998765
No 342
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=7.1e-10 Score=104.68 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 19 ~il~~vsl~i---~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~ 59 (343)
T PRK11153 19 HALNNVSLHI---PAGEIFGVIGASGAGKSTLIRCINLLERPTS 59 (343)
T ss_pred EEEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 4678888888 7787 89999999999999999999998765
No 343
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.1e-09 Score=97.83 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=37.3
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+.+.+.+.+ ..|. +.|+||+|+|||||+++|++..++..
T Consensus 10 ~~~~~il~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~ 54 (232)
T cd03300 10 YGGFVALDGVSLDI---KEGEFFTLLGPSGCGKTTLLRLIAGFETPTS 54 (232)
T ss_pred eCCeeeeccceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 34445778888888 6777 99999999999999999999998765
No 344
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.82 E-value=6.6e-10 Score=96.54 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
+.+++.-+|.-.+++.+++.+ ..|. +.|+||||+||||+.+++++.++++.+
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v---~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEV---RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred eccceeecCCEEEEeceeEEE---cCCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence 345666778888899999999 7888 999999999999999999999999863
No 345
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.5e-09 Score=99.34 Aligned_cols=41 Identities=34% Similarity=0.364 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 15 ~~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (274)
T PRK13644 15 TPALENINLVI---KKGEYIGIIGKNGSGKSTLALHLNGLLRPQK 56 (274)
T ss_pred CceeeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 34788888998 7787 99999999999999999999998765
No 346
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.7e-08 Score=94.39 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=53.7
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHH
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
+...|++|||++++.....+.|++.|++ .|.+..+|.+++. +..+.+.+++||.. +.+.+|+. +
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------------Pp~~~~fiL~t~~-~~~ll~TI~SRc~~-~~~~~~~~-~ 168 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEE-------------PSGDTVLLLISHQ-PSRLLPTIKSRCQQ-QACPLPSN-E 168 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhC-------------CCCCeEEEEEECC-hhhCcHHHHhhcee-eeCCCcCH-H
Confidence 3566999999999999999999999997 2345555555552 33589999999987 89988854 4
Q ss_pred HHHHHHHH
Q 017575 242 LRVKIVEE 249 (369)
Q Consensus 242 ~~~~il~~ 249 (369)
.....+..
T Consensus 169 ~~~~~L~~ 176 (328)
T PRK05707 169 ESLQWLQQ 176 (328)
T ss_pred HHHHHHHH
Confidence 44445443
No 347
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=1.4e-08 Score=90.22 Aligned_cols=221 Identities=18% Similarity=0.198 Sum_probs=123.1
Q ss_pred CeeEEecCCCCChhHHHHHHHhccCcceeecC--CCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchH
Q 017575 58 GGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVG--DPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATED 135 (369)
Q Consensus 58 g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (369)
..++|.||+|+|||.|++.+.++-.......+ ..+++.....+.-.+.+++.
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh-------------------------- 262 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH-------------------------- 262 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh--------------------------
Confidence 34999999999999999999877543211100 11122111122222222221
Q ss_pred hhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCC
Q 017575 136 RVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNP 215 (369)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~ 215 (369)
. +..-.|...-..|++..++++.+|+||+..+..+-|..|++.++++.+.-. |.......+|++|+-+-.
T Consensus 263 -----v---kgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pf--gsdr~v~sdfqliagtvr 332 (531)
T COG4650 263 -----V---KGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPF--GSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred -----h---ccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCC--CCccccccchHHhhhhHH
Confidence 1 000123333456888888999999999999999999999999998765432 555556678888876542
Q ss_pred C------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCH
Q 017575 216 E------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDH 289 (369)
Q Consensus 216 ~------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~ 289 (369)
+ ++.+.+.|.-|+.+ -.+..|......++| +|..-.+-...++.-...+.+..
T Consensus 333 dlrq~vaeg~fredl~arinl-wtf~lpgl~qr~edi--------------------epnldyelerha~~~g~~vrfnt 391 (531)
T COG4650 333 DLRQLVAEGKFREDLYARINL-WTFTLPGLRQRQEDI--------------------EPNLDYELERHASLTGDSVRFNT 391 (531)
T ss_pred HHHHHHhccchHHHHHHhhhe-eeeeccccccCcccc--------------------CCCccHHHHHHHHhhCceeeeeh
Confidence 2 24578888889876 444444322222222 00000111122334455677877
Q ss_pred HHHHHHHHHHHHc--CC-CCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 290 DLKVKISKVCAEL--NV-DGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 290 ~~~~~l~~~~~~~--~~-~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
++.+.-..++..- .. +.-|.+...+ ..+|.+.+...|+.+.++.-+
T Consensus 392 earra~l~fa~spqa~w~gnfrelsasv---trmatlad~grit~~~ve~ei 440 (531)
T COG4650 392 EARRAWLAFATSPQATWRGNFRELSASV---TRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred HHHHHHHHhccCcchhhcccHHHHhHHH---HHHHHHhcCCceeHHHHHHHH
Confidence 7776544444311 00 0124333322 334556666677776665443
No 348
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.81 E-value=1.4e-08 Score=93.59 Aligned_cols=241 Identities=22% Similarity=0.251 Sum_probs=141.6
Q ss_pred Cc-cccChHHHHHHhhhhhccCCCC-----e-eEEecCCCCChhHHHHHHHhccCccee--ecCCCCCCCCC--Ccchhh
Q 017575 35 FT-AIVGQEEMKLCLLLNVIDPKIG-----G-VMIMGDRGTGKSTTVRSLVDLLPVIKV--VVGDPYNSDPE--DPEAMG 103 (369)
Q Consensus 35 ~~-~i~G~~~~~~~l~~~l~~~~~g-----~-vlL~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~~~~--~~~~~~ 103 (369)
|. .++|-++.+..+-..+...+.| . ++|+||.|+|||+++++|...+..... ..++|....+. -+....
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r 138 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELR 138 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHH
Confidence 45 7899888877665444322222 2 889999999999999999988876541 22333322221 122222
Q ss_pred hhhhhhhh---ccccchhhh---------------hcc---------ccccCCC----CCchHhhhcccchhHHhh---h
Q 017575 104 IEVRESVV---KGEELSITF---------------SKI---------NMVDLPL----GATEDRVCGTIDIEKALT---E 149 (369)
Q Consensus 104 ~~~~~~~~---~~~~~~~~~---------------~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~---~ 149 (369)
..+...+. .+...++.. +.. .+..... ......+.|..++..... +
T Consensus 139 ~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~s~~ 218 (358)
T PF08298_consen 139 REFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEYSES 218 (358)
T ss_pred HHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhhccC
Confidence 11111111 111111110 000 0000111 112345566655443222 2
Q ss_pred cccccc-cchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------CCCH
Q 017575 150 GVKAFE-PGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------ELRP 222 (369)
Q Consensus 150 g~~~~~-~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------~l~~ 222 (369)
....+. .|.+..++.|++=+=|+-+.+.+.+..|+.+.+++.+... +.....+.+-.+||.+|+.+. +--+
T Consensus 219 dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~~~~~e 296 (358)
T PF08298_consen 219 DPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKNNKNNE 296 (358)
T ss_pred CCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhccccch
Confidence 222333 5788888988887779999999999999999999877663 222234567789999997653 2458
Q ss_pred hHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc
Q 017575 223 QLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL 302 (369)
Q Consensus 223 al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~ 302 (369)
||.||+.+ |.+||.-.-....+|-. +.+. ........+.+.+++.++.++.-.
T Consensus 297 Af~DRi~~-I~VPY~L~~s~E~kIY~------------------------k~~~--~s~l~~~h~aP~~L~~aA~f~VlT 349 (358)
T PF08298_consen 297 AFKDRIEV-IKVPYCLRVSEEVKIYE------------------------KLIG--KSDLRDAHIAPHTLEMAARFAVLT 349 (358)
T ss_pred hhhhheEE-EeccccCCHHHHHHHHH------------------------HHhh--hccccccccCchHHHHHHHHHHHh
Confidence 99999965 99999876666655533 1111 112335788888988888877654
Q ss_pred CC
Q 017575 303 NV 304 (369)
Q Consensus 303 ~~ 304 (369)
++
T Consensus 350 RL 351 (358)
T PF08298_consen 350 RL 351 (358)
T ss_pred cC
Confidence 44
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.81 E-value=1.2e-09 Score=92.94 Aligned_cols=108 Identities=20% Similarity=0.011 Sum_probs=66.2
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
++..+|...+.... +.+ ..|. +.|+||+|+|||||+++|+++.++..+.....-. .+...++
T Consensus 6 l~~~~~~~~~l~~~-~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-----------~i~~~~q-- 68 (177)
T cd03222 6 CVKRYGVFFLLVEL-GVV---KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-----------TPVYKPQ-- 68 (177)
T ss_pred eEEEECCEEEEccC-cEE---CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-----------EEEEEcc--
Confidence 34445554444443 455 6777 9999999999999999999999765421110000 0000000
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.. .+++|+.+ ...+.....+|.++++||| ..+|+.....+.+.+.+
T Consensus 69 ------------------~~------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 69 ------------------YI------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred ------------------cC------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00 02344432 2233333358999999999 79999999888888864
No 350
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.7e-09 Score=98.85 Aligned_cols=133 Identities=17% Similarity=0.286 Sum_probs=81.8
Q ss_pred eEEEeCCCC-------------CCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhcc
Q 017575 166 ILYVDEVNL-------------LDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGM 230 (369)
Q Consensus 166 vl~lDE~~~-------------l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~ 230 (369)
|+++||++. ....+.+.|+.=|+. +..-.++.+|+-+|.. ..+++||++ ||.+
T Consensus 327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG-----------VeqLNNILVIGMTNR~-DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG-----------VEQLNNILVIGMTNRK-DLIDEALLRPGRLEV 394 (744)
T ss_pred EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc-----------HHhhhcEEEEeccCch-hhHHHHhcCCCceEE
Confidence 999999922 223467888777763 1112478899999953 358999998 9999
Q ss_pred ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCch
Q 017575 231 HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRG 309 (369)
Q Consensus 231 ~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~ 309 (369)
++++..| ++..+..|+..... ++.+ .-.+++++ +..|+.+.+ ++ |.-.
T Consensus 395 qmEIsLP-DE~gRlQIl~IHT~---------------------rMre------~~~l~~dVdl~elA~lTK--Nf-SGAE 443 (744)
T KOG0741|consen 395 QMEISLP-DEKGRLQILKIHTK---------------------RMRE------NNKLSADVDLKELAALTK--NF-SGAE 443 (744)
T ss_pred EEEEeCC-CccCceEEEEhhhh---------------------hhhh------cCCCCCCcCHHHHHHHhc--CC-chhH
Confidence 9999888 55666666553211 1111 11222222 334555554 33 5567
Q ss_pred hHHHHHHHHHHHHHcCC-----C----------CCCHHHHHHHHhHH
Q 017575 310 DIVSNRAAKALAALKGR-----D----------KVSAEDIATVMPNC 341 (369)
Q Consensus 310 ~~~ll~~a~a~A~l~~~-----~----------~v~~~~i~~a~~~v 341 (369)
+.-+++.|.+.|.-+.- . .|+.+|+..|+..|
T Consensus 444 leglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dV 490 (744)
T KOG0741|consen 444 LEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDV 490 (744)
T ss_pred HHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhc
Confidence 77888888888764321 1 36667777776644
No 351
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.81 E-value=4.8e-09 Score=92.46 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=71.4
Q ss_pred HHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchhhhh
Q 017575 46 LCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSITFS 121 (369)
Q Consensus 46 ~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (369)
..+++.+ ..|. +.|+||+|+|||||+++|+++.++..+.. +.+.... ......+...++....++..++
T Consensus 15 ~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~i~~v~q~~~~~~~~t~ 87 (213)
T TIGR01277 15 MEFDLNV---ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL----APYQRPVSMLFQENNLFAHLTV 87 (213)
T ss_pred eeeEEEE---eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC----ChhccceEEEeccCccCCCCcH
Confidence 3567777 6777 99999999999999999999998765311 1111100 0011112222222222221121
Q ss_pred cccccc---CCCC---C---chHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-CCCCHHHHHHH
Q 017575 122 KINMVD---LPLG---A---TEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV-NLLDDHLVDVL 183 (369)
Q Consensus 122 ~~~~~~---~~~~---~---~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~-~~l~~~~~~~L 183 (369)
...+.. .... . ........+++..........+..|..++ .+|.++++||| ..+|...+..+
T Consensus 88 ~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 167 (213)
T TIGR01277 88 RQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167 (213)
T ss_pred HHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 111100 0000 0 01112222222222222222233333222 38999999999 89999999999
Q ss_pred HHHHhc
Q 017575 184 LDSAAS 189 (369)
Q Consensus 184 ~~~l~~ 189 (369)
.++|.+
T Consensus 168 ~~~l~~ 173 (213)
T TIGR01277 168 LALVKQ 173 (213)
T ss_pred HHHHHH
Confidence 988875
No 352
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.81 E-value=2e-09 Score=102.10 Aligned_cols=140 Identities=18% Similarity=0.104 Sum_probs=71.9
Q ss_pred HhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCC--Ccchhhhhhhhhhhccccchhhh
Q 017575 47 CLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPE--DPEAMGIEVRESVVKGEELSITF 120 (369)
Q Consensus 47 ~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
.+++.+ ..|. +.|+||||+|||||+++|+++.++.++. .+.++..... ........+..+++....++..+
T Consensus 15 ~isl~i---~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTL---PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 567777 6777 8999999999999999999999876532 1212111000 00011112223333322222222
Q ss_pred hcccccc----CCCCC---chHhhhcccchh-------HHhhhccccc-ccchhhhcCCCeEEEeCC-CCCCHHHHHHHH
Q 017575 121 SKINMVD----LPLGA---TEDRVCGTIDIE-------KALTEGVKAF-EPGLLAKANRGILYVDEV-NLLDDHLVDVLL 184 (369)
Q Consensus 121 ~~~~~~~----~~~~~---~~~~~~~~~~~~-------~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~ 184 (369)
+...+.. ..... ....+...+++. ..+++|+.+. ..+.....+|.++++||| ..+|+.....++
T Consensus 92 v~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~ 171 (354)
T TIGR02142 92 VRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171 (354)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 2211110 00000 011122222222 2233333321 111122238999999999 899999999988
Q ss_pred HHHhc
Q 017575 185 DSAAS 189 (369)
Q Consensus 185 ~~l~~ 189 (369)
+.|.+
T Consensus 172 ~~L~~ 176 (354)
T TIGR02142 172 PYLER 176 (354)
T ss_pred HHHHH
Confidence 88865
No 353
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.81 E-value=2.6e-09 Score=106.45 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 16 ~l~~~~~~~~il~~vsl~i---~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~ 65 (510)
T PRK15439 16 SISKQYSGVEVLKGIDFTL---HAGEVHALLGGNGAGKSTLMKIIAGIVPPDS 65 (510)
T ss_pred eEEEEeCCceeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4445566666788999998 7787 99999999999999999999998765
No 354
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.2e-09 Score=97.16 Aligned_cols=45 Identities=29% Similarity=0.446 Sum_probs=37.6
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+..++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++
T Consensus 11 ~~~~~~~~~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 11 RVYYGSNHVIKGVDLKI---PQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EEEeCCeeeeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 33445555788888988 7787 999999999999999999999875
No 355
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=3.2e-09 Score=97.44 Aligned_cols=40 Identities=33% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 21 ~~l~~vsl~i---~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~ 61 (279)
T PRK13635 21 YALKDVSFSV---YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61 (279)
T ss_pred cceeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 4788889998 7787 89999999999999999999998765
No 356
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.7e-09 Score=97.59 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 22 ~~il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 63 (271)
T PRK13632 22 NNALKNVSFEI---NEGEYVAILGHNGSGKSTISKILTGLLKPQS 63 (271)
T ss_pred ccceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 45788888888 6777 99999999999999999999998765
No 357
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.80 E-value=2.6e-09 Score=96.92 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=38.2
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 9 ~~~~~~~il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 55 (256)
T TIGR03873 9 WSAGGRLIVDGVDVTA---PPGSLTGLLGPNGSGKSTLLRLLAGALRPDA 55 (256)
T ss_pred EEECCEEEEeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 3345455788888888 6777 99999999999999999999998764
No 358
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.6e-09 Score=98.05 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|++++++.++
T Consensus 17 ~~~l~~vsl~i---~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 59 (277)
T PRK13652 17 KEALNNINFIA---PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG 59 (277)
T ss_pred CceeeEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 34788888888 7787 899999999999999999999987653
No 359
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=4.4e-09 Score=99.71 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=72.2
Q ss_pred HhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCC--Ccchhhhhhhhhhhccccchhhh
Q 017575 47 CLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPE--DPEAMGIEVRESVVKGEELSITF 120 (369)
Q Consensus 47 ~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
.+++.+ ..|. +.|+||+|||||||+++|+++.++.++.. +.++..... ........+...++....++..+
T Consensus 16 ~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTL---PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 567776 6777 99999999999999999999998765321 111111000 00011112333334333333323
Q ss_pred hccccccCCCC-Cc---hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHH
Q 017575 121 SKINMVDLPLG-AT---EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDDHLVDVLLDSA 187 (369)
Q Consensus 121 ~~~~~~~~~~~-~~---~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l 187 (369)
+...+. .+.. .. ...+...+++. ..+++|+.+.. .+.....+|.++++||| ..+|+.....+++.|
T Consensus 93 v~enl~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L 171 (352)
T PRK11144 93 VRGNLR-YGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL 171 (352)
T ss_pred HHHHHH-hhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 221111 0000 00 11122222221 12233332211 12222238999999999 799999998888888
Q ss_pred hc
Q 017575 188 AS 189 (369)
Q Consensus 188 ~~ 189 (369)
.+
T Consensus 172 ~~ 173 (352)
T PRK11144 172 ER 173 (352)
T ss_pred HH
Confidence 64
No 360
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=3.6e-09 Score=96.23 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=37.2
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.+
T Consensus 19 l~~~~~~~~il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 19 LNFYYGKFHALKNINLDI---AKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EEEEeCCeEEeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 333455555788888988 7787 99999999999999999999985
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.80 E-value=2e-09 Score=107.91 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+.+++.+++.+ ..|. +.|+||+||||||++++++++.++.+
T Consensus 348 ~~vL~~isl~i---~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 348 PPVLDGVSLDL---PPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred CceeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 34788889998 7777 99999999999999999999998875
No 362
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.6e-09 Score=96.53 Aligned_cols=42 Identities=31% Similarity=0.420 Sum_probs=35.5
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++
T Consensus 13 ~~~~~~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 13 FGQVEVLDGVNLEI---PDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred ECCeeeeecceeEE---cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 44445678888888 6777 999999999999999999999863
No 363
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.79 E-value=2.4e-09 Score=100.67 Aligned_cols=142 Identities=19% Similarity=0.138 Sum_probs=79.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcch---hhhhhhhhhhcccc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEA---MGIEVRESVVKGEE 115 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 115 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.++.. +.++... .... ....+..++|....
T Consensus 19 ~~L~~vsl~i---~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~--~~~~l~~~r~~Ig~v~Q~~~l 93 (343)
T TIGR02314 19 QALNNVSLHV---PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL--SNSELTKARRQIGMIFQHFNL 93 (343)
T ss_pred EEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC--CHHHHHHHhcCEEEEECCccc
Confidence 4688889998 7787 88999999999999999999998875321 2222111 1111 12234444554444
Q ss_pred chhhhhcccccc---C-CCCC--ch---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCH
Q 017575 116 LSITFSKINMVD---L-PLGA--TE---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 116 ~~~~~~~~~~~~---~-~~~~--~~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
++..++...+.. . .... .. ..+...+++. ..+++|+.+.. .+.....+|.++++||| ..+|+
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~ 173 (343)
T TIGR02314 94 LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (343)
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 433333221110 0 0000 00 1111111111 23344443211 11122238999999999 79999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
.....++++|.+
T Consensus 174 ~t~~~i~~lL~~ 185 (343)
T TIGR02314 174 ATTQSILELLKE 185 (343)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 364
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.79 E-value=1.8e-09 Score=96.76 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=36.7
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+.+.+++.+ ..|+ +.|+||+|+|||||+++|++.+++.+
T Consensus 10 ~~~~~il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 54 (237)
T TIGR00968 10 FGSFQALDDVNLEV---PTGSLVALLGPSGSGKSTLLRIIAGLEQPDS 54 (237)
T ss_pred ECCeeeeeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 34445677888888 6787 99999999999999999999988765
No 365
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=3.3e-09 Score=97.61 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 19 ~~~l~~vs~~i---~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~ 60 (283)
T PRK13636 19 THALKGININI---KKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60 (283)
T ss_pred CeeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 45788899998 7787 99999999999999999999998765
No 366
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.79 E-value=2.6e-09 Score=92.84 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.6
Q ss_pred hhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 48 LLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 48 l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 19 vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (195)
T PRK13541 19 LSITF---LPSAITYIKGANGCGKSSLLRMIAGIMQPSS 54 (195)
T ss_pred EEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 66676 6777 99999999999999999999988765
No 367
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.1e-09 Score=104.82 Aligned_cols=44 Identities=34% Similarity=0.366 Sum_probs=36.2
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..
T Consensus 38 ~~~~~~L~~isl~i---~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 38 TGLSLGVKDASLAI---EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cCCeEEEEeEEEEE---cCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 34434567777777 6777 99999999999999999999998765
No 368
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.78 E-value=5.1e-09 Score=95.68 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=37.1
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
-++...+++.+++.+ ..|. +.|+||+|+|||||+++|++++++.
T Consensus 10 ~~~~~~il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 10 ARRHRAILRDLSLRI---EPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EECCEeEEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 345555788888888 7787 9999999999999999999999764
No 369
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.9e-08 Score=103.00 Aligned_cols=136 Identities=17% Similarity=0.270 Sum_probs=84.8
Q ss_pred cccChHHHHHHhhhhhccCC------CCe--eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhh
Q 017575 37 AIVGQEEMKLCLLLNVIDPK------IGG--VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~------~g~--vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (369)
.++||++++.+|..++.... ... ++|.||.|+|||-+|+++|..+..+. ..+ +..+.....+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse----~~~--IriDmse~~e---- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE----ENF--IRLDMSEFQE---- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc----cce--EEechhhhhh----
Confidence 47899999999999885211 122 99999999999999999999995332 011 1100000000
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc----CCCeEEEeCCCCCCHHHHHHHH
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA----NRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a----~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
..++.|.- ..+.+- -..|.+..+ ...|+||||++..++.+++.|+
T Consensus 633 -------------------------vskligsp---~gyvG~---e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~ll 681 (898)
T KOG1051|consen 633 -------------------------VSKLIGSP---PGYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILL 681 (898)
T ss_pred -------------------------hhhccCCC---cccccc---hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHH
Confidence 00000000 000000 001222222 3469999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCC
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNP 215 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~ 215 (369)
++|++|.++-. .|.++++. +..||+|+|-
T Consensus 682 q~lD~GrltDs-~Gr~Vd~k-N~I~IMTsn~ 710 (898)
T KOG1051|consen 682 QLLDRGRLTDS-HGREVDFK-NAIFIMTSNV 710 (898)
T ss_pred HHHhcCccccC-CCcEeecc-ceEEEEeccc
Confidence 99999988754 36666554 6778888884
No 370
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.7e-09 Score=98.35 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=35.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~ 79 (369)
+|+--||.+.++..-.+.+ ..|+ +.|+|+||+|||||+|+|+.
T Consensus 85 ~fdLa~G~k~LL~~a~L~L---~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTL---SRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeecchhhhcCCceee---ecccccceeCCCCCcHHHHHHHHHh
Confidence 4666678777777667777 6777 99999999999999999998
No 371
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.78 E-value=2.3e-09 Score=94.91 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|++..++.+
T Consensus 18 ~~il~~vs~~i---~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~ 59 (220)
T TIGR02982 18 KQVLFDINLEI---NPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59 (220)
T ss_pred eeEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 34677888888 6777 99999999999999999999998765
No 372
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=4.6e-09 Score=95.96 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=37.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++..++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.+
T Consensus 26 ~l~~~~~~~~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 26 DLSIYYGEKRAVNDISMDI---EKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred EEEEEeCCceeeeceEEEE---cCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3444456666788899998 7787 99999999999999999999763
No 373
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.78 E-value=1.3e-09 Score=98.83 Aligned_cols=48 Identities=27% Similarity=0.370 Sum_probs=38.6
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 11 l~~~~~~~~~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 59 (257)
T PRK10619 11 LHKRYGEHEVLKGVSLQA---NAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59 (257)
T ss_pred eEEEECCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 333444445677888888 7787 89999999999999999999998764
No 374
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.78 E-value=2.8e-09 Score=106.10 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=40.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..++...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 9 ~l~~~~~~~~~l~~is~~i---~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~ 58 (501)
T PRK10762 9 GIDKAFPGVKALSGAALNV---YPGRVMALVGENGAGKSTMMKVLTGIYTRDA 58 (501)
T ss_pred eeEEEeCCeEEeeeeeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3444455555788889998 7787 99999999999999999999998765
No 375
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.78 E-value=7.2e-09 Score=105.27 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhhccccc
Q 017575 41 QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 41 ~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
...+++.+++.+ ..|. +.|+||+|+||||++++|+++. +.++. .+.+. ...+...+...+..+.|....+
T Consensus 362 ~~~vL~~i~l~i---~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i--~~~~~~~lr~~i~~v~Q~~~LF 435 (588)
T PRK11174 362 GKTLAGPLNFTL---PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL--RELDPESWRKHLSWVGQNPQLP 435 (588)
T ss_pred CCeeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEec--ccCCHHHHHhheEEecCCCcCC
Confidence 345788888888 6777 9999999999999999999999 54321 11111 1112223333333333333222
Q ss_pred hhhhhccccccCCCCCchHhhhccc------chh---------------HHhhhccccc-ccchhhhcCCCeEEEeCC-C
Q 017575 117 SITFSKINMVDLPLGATEDRVCGTI------DIE---------------KALTEGVKAF-EPGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------------~~~~~g~~~~-~~g~~~~a~~~vl~lDE~-~ 173 (369)
..+++.++.......+.+++...+ +.. ..+++|+++. .-.+....+|.++++||+ .
T Consensus 436 -~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TS 514 (588)
T PRK11174 436 -HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTA 514 (588)
T ss_pred -CcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 223332222211122222221111 111 1123333221 111111238999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|.+....+.+.+.+
T Consensus 515 aLD~~te~~i~~~l~~ 530 (588)
T PRK11174 515 SLDAHSEQLVMQALNA 530 (588)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999998888888764
No 376
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=4.3e-09 Score=95.37 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=38.1
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|++++++
T Consensus 13 l~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 13 LNLFYTDFKALNNINIKI---LKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eEEEeCCceeecceeeEE---cCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 333455555788889998 7787 999999999999999999999875
No 377
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.78 E-value=6.4e-09 Score=92.11 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=35.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+.+.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 18 ~~l~~i~~~i---~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~ 58 (220)
T cd03245 18 PALDNVSLTI---RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS 58 (220)
T ss_pred ccccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 4678888888 6777 99999999999999999999987654
No 378
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=3.1e-09 Score=97.10 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=35.3
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 23 ~~l~~isl~i---~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~ 63 (269)
T PRK13648 23 FTLKDVSFNI---PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS 63 (269)
T ss_pred cceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 3678888888 7787 99999999999999999999998765
No 379
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.77 E-value=2.6e-08 Score=93.38 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=49.8
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCC
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTV 237 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~ 237 (369)
+...|++|||++.+....+++|+..|++ .+....+|.++| .+..+.+++.+||.. +.+.++
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEe-------------p~~~~~~il~~n-~~~~il~tI~SRc~~-i~f~~~ 168 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEE-------------PPKNTRFILITN-DPSKILPTIRSRCQR-IRFKPP 168 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhcc-------------CCCCeEEEEEcC-Chhhccchhhhccee-eecCCc
Confidence 3456999999999999999999999987 245666777888 455688899999976 887764
No 380
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.77 E-value=3.1e-09 Score=89.86 Aligned_cols=119 Identities=22% Similarity=0.263 Sum_probs=68.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFS 121 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..+....... ..+....+... +...++
T Consensus 15 ~~l~~i~l~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~q~~~-~~~~tv 80 (166)
T cd03223 15 VLLKDLSFEI---KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------EDLLFLPQRPY-LPLGTL 80 (166)
T ss_pred eeeecCeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ceEEEECCCCc-cccccH
Confidence 4677788888 6777 9999999999999999999999776421111000 00111111000 000000
Q ss_pred ccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 122 KINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.+.+... ....+++|+.. ...+.....+|.++++||| +.+|+..+..+.+.+.+
T Consensus 81 ------------~~nl~~~--~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 81 ------------REQLIYP--WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred ------------HHHhhcc--CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 0111000 01223444432 1222223348999999999 79999999999999875
No 381
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.77 E-value=2.5e-09 Score=92.74 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=44.7
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++..+|...+++.+++.+ ..|. ..|+||||+||||+.|.|.+++.+.+
T Consensus 6 e~vtK~Fg~k~av~~isf~v---~~G~i~GllG~NGAGKTTtfRmILglle~~~ 56 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEV---PPGEIFGLLGPNGAGKTTTFRMILGLLEPTE 56 (300)
T ss_pred ecchhccCceeeecceeeee---cCCeEEEeecCCCCCccchHHHHhccCCccC
Confidence 35666789999999999999 7888 88999999999999999999999865
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.7e-08 Score=94.20 Aligned_cols=142 Identities=25% Similarity=0.275 Sum_probs=75.5
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee--cCCCC--CC-CCCCcchhh--hhhhhhhh
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV--VGDPY--NS-DPEDPEAMG--IEVRESVV 111 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~--~~~~~--~~-~~~~~~~~~--~~~~~~~~ 111 (369)
||+.+...+.+.+ .-.. |.|+||+|+|||||++++.+.+.+..+- ....+ .+ .+...+.+. ..-...++
T Consensus 598 gqkpLFkkldFGi---DmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLq 674 (807)
T KOG0066|consen 598 GQKPLFKKLDFGI---DMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQ 674 (807)
T ss_pred CCCchhhcccccc---cccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHH
Confidence 6777777777766 3344 9999999999999999999999876421 11111 00 000001111 01111112
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
..-+++....+..+-.+++. +...++.+ ..+++|... ....-+....|+|++|||| |++|.+...+|-+.+++
T Consensus 675 r~FNlpyq~ARK~LG~fGL~----sHAHTiki-kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 675 RKFNLPYQEARKQLGTFGLA----SHAHTIKI-KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred HhcCCChHHHHHHhhhhhhh----hccceEee-eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 22222221111000000000 00001110 223455432 2234455568999999999 89999999999999986
No 383
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.77 E-value=2.4e-07 Score=82.12 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHh-------cCCceeeecceeeeecCceEEEeecCCCC---CCCCHhHHhhhcccee
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAA-------SGWNTVEREGISISHPARFILIGSGNPEE---GELRPQLLDRFGMHAQ 233 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~-------~~~~~~~~~~~~~~~~~~~~li~t~n~~~---~~l~~al~~R~~~~i~ 233 (369)
+.|+.+||+|+++.++.+.+.+.+. ++.-.+.-.|..+..+..+.+..|+||.. .++|+.|..-|.. +-
T Consensus 85 GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRp-va 163 (231)
T PF12774_consen 85 GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRP-VA 163 (231)
T ss_dssp T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEE-EE
T ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhhe-eE
Confidence 5699999999999998776655444 34433333477888888888888999753 2488888888875 77
Q ss_pred ecCCCCHHHHHHHHHH
Q 017575 234 VGTVRDAELRVKIVEE 249 (369)
Q Consensus 234 ~~~~~~~~~~~~il~~ 249 (369)
+..| +......+...
T Consensus 164 m~~P-D~~~I~ei~L~ 178 (231)
T PF12774_consen 164 MMVP-DLSLIAEILLL 178 (231)
T ss_dssp --S---HHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHH
Confidence 7777 34444444433
No 384
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.77 E-value=1e-08 Score=91.14 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 28 ~~l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 68 (226)
T cd03248 28 LVLQDVSFTL---HPGEVTALVGPSGSGKSTVVALLENFYQPQG 68 (226)
T ss_pred ccccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 4788888888 6777 99999999999999999999997765
No 385
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.77 E-value=1e-08 Score=101.80 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=40.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 8 ~l~~~~~~~~il~~vsl~i---~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~ 57 (490)
T PRK10938 8 QGTFRLSDTKTLQLPSLTL---NAGDSWAFVGANGSGKSALARALAGELPLLS 57 (490)
T ss_pred eEEEEcCCeeecccceEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 3444566556888999998 7787 99999999999999999999997754
No 386
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=3e-09 Score=98.07 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=35.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 21 ~~l~~vs~~i---~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~ 61 (287)
T PRK13637 21 KALDNVNIEI---EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61 (287)
T ss_pred ceeeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 4788888998 7787 99999999999999999999998765
No 387
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5.1e-09 Score=103.65 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=37.2
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.+.+.+++.+ .+|. +.|+||+|+||||++.+|-++..|.++
T Consensus 482 ~Vlk~lsfti---~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 482 PVLKNLSFTI---RPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred hhhcCceeee---CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 4789999999 7888 999999999999999999999988764
No 388
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.76 E-value=3.1e-09 Score=105.99 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=40.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 10 ~l~~~~~~~~il~~vs~~i---~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~ 59 (510)
T PRK09700 10 GIGKSFGPVHALKSVNLTV---YPGEIHALLGENGAGKSTLMKVLSGIHEPTK 59 (510)
T ss_pred eeEEEcCCeEEeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCcCCCc
Confidence 3444455555788899998 7787 99999999999999999999997754
No 389
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.76 E-value=4.6e-09 Score=95.41 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=35.7
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++
T Consensus 13 ~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 13 YYGSFHAVEDVNLNI---EPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred EECCEeeeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 344445778888888 6777 999999999999999999999863
No 390
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.76 E-value=3.9e-09 Score=94.69 Aligned_cols=144 Identities=24% Similarity=0.219 Sum_probs=93.2
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCC-Ccchhhhhhhhhhhccccc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPE-DPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 116 (369)
-.+++.+++.+ ..|. +.++|.+|+|||||+|++-.+-.|+++.. +........ .....+..+..+||+..++
T Consensus 19 ~~al~~vsL~I---~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 19 VTALDDVSLEI---PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred eeeeccceEEE---cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 34688899999 7888 88999999999999999999998876322 222222211 2234566888889998888
Q ss_pred hhhhhccccccCCC---CCc----hHh------hhcccchh----HHhhhccccccc-chhhhcCCCeEEEeCC-CCCCH
Q 017575 117 SITFSKINMVDLPL---GAT----EDR------VCGTIDIE----KALTEGVKAFEP-GLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 117 ~~~~~~~~~~~~~~---~~~----~~~------~~~~~~~~----~~~~~g~~~~~~-g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
...++..++. +|. +.+ ..+ +.|..+.. ..+++|++.... .+-.-.+|.|++.||+ ..|||
T Consensus 96 ssrTV~~NvA-~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 96 SSRTVFENVA-FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred ccchHHhhhh-hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 8766543321 111 111 111 12222221 334556554331 1111238999999999 78999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
+....++++|.+
T Consensus 175 ~TT~sIL~LL~~ 186 (339)
T COG1135 175 ETTQSILELLKD 186 (339)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 391
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.76 E-value=6.8e-09 Score=105.41 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=77.1
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+.+.+ ..|+ ++|+|++|+|||||+++|+++.++.++. .+.+... .+...+...+..+.|....+
T Consensus 348 ~~iL~~inl~i---~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf- 421 (588)
T PRK13657 348 RQGVEDVSFEA---KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT--VTRASLRRNIAVVFQDAGLF- 421 (588)
T ss_pred CceecceeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh--CCHHHHHhheEEEecCcccc-
Confidence 45788888888 6777 9999999999999999999999886532 1111111 11222223333333332222
Q ss_pred hhhhccccccCCCCCchHhhhccc---chh------------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRVCGTI---DIE------------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~ 174 (369)
..+++.++.......+++++...+ +.. ..+++|+++ ..-.+....+|.++++||| ..
T Consensus 422 ~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~ 501 (588)
T PRK13657 422 NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSA 501 (588)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 222322221111111222211110 000 112333321 1111122238999999999 79
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+++.+.+
T Consensus 502 LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 502 LDVETEAKVKAALDE 516 (588)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888864
No 392
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=4.2e-09 Score=96.23 Aligned_cols=45 Identities=29% Similarity=0.366 Sum_probs=37.0
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++..++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.+
T Consensus 19 l~~~~~~~~il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 19 VTISYGTFEAVKNVFCDI---PRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEEEECCEEEEcceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 333455555788888888 7787 99999999999999999999975
No 393
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.76 E-value=2.8e-08 Score=90.52 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=48.4
Q ss_pred CCCeEEEeCCCCCCHH------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCC--CCHhHHhhhccceee
Q 017575 163 NRGILYVDEVNLLDDH------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGE--LRPQLLDRFGMHAQV 234 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~--l~~al~~R~~~~i~~ 234 (369)
+..|+|+|++|...++ ..+.|+++|+.+... .+.......-.++.+++|+||..+. +++.+++.|.+ +.+
T Consensus 100 k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~y-d~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i-~~~ 177 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFY-DRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNI-LNI 177 (272)
T ss_dssp SEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEE-CTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEE-EE-
T ss_pred cEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcc-cCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEE-EEe
Confidence 4459999999876544 568888888875432 2222233333578899999985543 66778888876 888
Q ss_pred cCCCCHHHHHHHH
Q 017575 235 GTVRDAELRVKIV 247 (369)
Q Consensus 235 ~~~~~~~~~~~il 247 (369)
++|+... ...|.
T Consensus 178 ~~p~~~s-l~~If 189 (272)
T PF12775_consen 178 PYPSDES-LNTIF 189 (272)
T ss_dssp ---TCCH-HHHHH
T ss_pred cCCChHH-HHHHH
Confidence 8886543 43443
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.76 E-value=6.3e-09 Score=102.57 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+.+.+++.+ ..|+ +.|+|+||+|||||+|+|++...+..
T Consensus 8 ~ls~~~g~~~l~~~~~l~~---~~G~riGLvG~NGaGKSTLLkilaG~~~~~~ 57 (530)
T COG0488 8 NLSLAYGDRPLLENVSLTL---NPGERIGLVGRNGAGKSTLLKILAGELEPDS 57 (530)
T ss_pred eeEEeeCCceeecCCccee---CCCCEEEEECCCCCCHHHHHHHHcCCCcCCC
Confidence 4566678888999999999 6777 99999999999999999999998765
No 395
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.76 E-value=4.2e-09 Score=93.96 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=29.8
Q ss_pred hhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 48 LLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 48 l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 4 is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 39 (230)
T TIGR01184 4 VNLTI---QQGEFISLIGHSGCGKSTLLNLISGLAQPTS 39 (230)
T ss_pred eeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45555 5677 99999999999999999999998764
No 396
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.76 E-value=1.8e-09 Score=95.93 Aligned_cols=49 Identities=27% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.-+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 27 ~~~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 76 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEV---PRGERIGLIGRNGAGKSTLLRLLAGIYPPDS 76 (224)
T ss_pred hhhhhcCCeEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3444566667888889998 7777 99999999999999999999988765
No 397
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.76 E-value=7.6e-09 Score=104.75 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+.+.+++.+ ..|. ++|+|++|+|||||+++|+++..+.+
T Consensus 346 ~il~~inl~i---~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~ 386 (571)
T TIGR02203 346 PALDSISLVI---EPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386 (571)
T ss_pred ccccCeeEEe---cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 3677788887 6777 99999999999999999999998775
No 398
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.76 E-value=7.6e-09 Score=91.44 Aligned_cols=134 Identities=16% Similarity=0.087 Sum_probs=88.3
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccCcceeecCC---CCCCCCCCcchh--hhhhhhhhhccccchhhhhccccc-cCC
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGD---PYNSDPEDPEAM--GIEVRESVVKGEELSITFSKINMV-DLP 129 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 129 (369)
..|-..|.|++|+|||+++++|+++..++.+.... .+.......... ...+.++||...++++.+++.++. .+.
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 33448999999999999999999999988643222 222222222222 337889999999999988775543 222
Q ss_pred CC--CchHhhhcccchh-------HHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 130 LG--ATEDRVCGTIDIE-------KALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 130 ~~--~~~~~~~~~~~~~-------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+. ...+.+...+.+. ..+++|+++ ...|.-..+.|.++++||| ..+|..-...++..++.
T Consensus 103 ~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHH
Confidence 22 1234455555554 334566654 3356666679999999999 77777666666666653
No 399
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.5e-09 Score=94.09 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=68.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC--cceee---cCCCCCCCCCCcchhhhhhhhhhhccccc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP--VIKVV---VGDPYNSDPEDPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++... +..+. .+.++. ......+...++....+
T Consensus 21 ~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~------~~~~~~i~~~~q~~~~~ 91 (192)
T cd03232 21 QLLNNISGYV---KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD------KNFQRSTGYVEQQDVHS 91 (192)
T ss_pred EeEEccEEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH------HHhhhceEEecccCccc
Confidence 4677888888 6777 99999999999999999999753 33211 011110 00011111111111111
Q ss_pred hhhhhccccccCCCCCchHhhhcccchhHHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 117 SITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+..++ .+.+.-.. ....+++|+.... .+.....+|.++++||| ..+|+.....+.+.+.+
T Consensus 92 ~~~tv------------~~~l~~~~-~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 92 PNLTV------------REALRFSA-LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred cCCcH------------HHHHHHHH-HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 10010 11110000 0003455554322 22233348999999999 78999999999998875
No 400
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.75 E-value=2.5e-09 Score=93.24 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=70.1
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc--Ccceee---cCCCCCCCCCCcchh-hhhhhhhhh
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL--PVIKVV---VGDPYNSDPEDPEAM-GIEVRESVV 111 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l--~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~ 111 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|++.. .+..+. .+.+.... ..... ...+...++
T Consensus 10 ~~~~~~l~~is~~i---~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~--~~~~~~~~~i~~v~q 84 (200)
T cd03217 10 VGGKEILKGVNLTI---KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL--PPEERARLGIFLAFQ 84 (200)
T ss_pred eCCEEeeeccceEE---CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcC--CHHHHhhCcEEEeec
Confidence 33334677888888 6777 9999999999999999999994 443321 11111110 00000 001111111
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
....++. .+....... ....+++|+.. ...+.....+|.++++||| +.+|+.....+++++.+
T Consensus 85 ~~~~~~~-------------~~~~~~l~~--~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 85 YPPEIPG-------------VKNADFLRY--VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK 149 (200)
T ss_pred ChhhccC-------------ccHHHHHhh--ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 1111110 011111100 00123444432 1122223348999999999 79999999999988875
No 401
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=3.5e-09 Score=97.01 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 18 ~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 59 (274)
T PRK13647 18 TKALKGLSLSI---PEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59 (274)
T ss_pred CeeeeeEEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 34788888888 7787 99999999999999999999998765
No 402
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.75 E-value=1.8e-09 Score=102.69 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=80.4
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCC-----CCCCCCcchhh----hhh
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPY-----NSDPEDPEAMG----IEV 106 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~-----~~~~~~~~~~~----~~~ 106 (369)
.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..+...... .........+. ..+
T Consensus 32 ~~~g~~~~l~~vsf~i---~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDI---EEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 3345555667778887 7787 999999999999999999999987653211111 11111111111 234
Q ss_pred hhhhhccccchhhhhcccccc-C---CCCCc--h---HhhhcccchhHHhhhcccccccchhhh--------cCCCeEEE
Q 017575 107 RESVVKGEELSITFSKINMVD-L---PLGAT--E---DRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYV 169 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~---~~~~~--~---~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~l 169 (369)
..++|....+++.++..++.. . ..... . ......+++..........++.|..++ .+|.++++
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 444555444444333322110 0 00000 0 111222222111111111222333222 38999999
Q ss_pred eCC-CCCCHHHHHHHHHHHhc
Q 017575 170 DEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 170 DE~-~~l~~~~~~~L~~~l~~ 189 (369)
||| ..+|+..+..+.+.|.+
T Consensus 189 DEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 189 DEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred ECCCccCCHHHHHHHHHHHHH
Confidence 999 89999998888888764
No 403
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.75 E-value=4.3e-09 Score=94.31 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 16 ~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (237)
T cd03252 16 VILDNISLRI---KPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN 56 (237)
T ss_pred cceeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 4677888888 6777 99999999999999999999997764
No 404
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=107.20 Aligned_cols=141 Identities=19% Similarity=0.238 Sum_probs=103.6
Q ss_pred CCC--eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCc
Q 017575 56 KIG--GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGAT 133 (369)
Q Consensus 56 ~~g--~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (369)
..| .++|.||.|||||.+++.++... +.++..+..+....-.+..+.
T Consensus 437 ~~~~~pillqG~tssGKtsii~~la~~~-------g~~~vrinnhehtd~qeyig~------------------------ 485 (1856)
T KOG1808|consen 437 SSGKFPILLQGPTSSGKTSIIKELARAT-------GKNIVRINNHEHTDLQEYIGT------------------------ 485 (1856)
T ss_pred hcCCCCeEEecCcCcCchhHHHHHHHHh-------ccCceehhccccchHHHHHHh------------------------
Confidence 455 39999999999999999999998 445544443333333333221
Q ss_pred hHhhhcccchhHHhhhcccccccchhhhc--CCCeEEEeCCCCCCHHHHHHHHHHHhc-CCceeeecceeeeecCceEEE
Q 017575 134 EDRVCGTIDIEKALTEGVKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDVLLDSAAS-GWNTVEREGISISHPARFILI 210 (369)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~a--~~~vl~lDE~~~l~~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~~~~li 210 (369)
..+...|...++.|.+..| ++.++++||+|..+.++..+|..+++. +.+.+++....+..+..|++.
T Consensus 486 ----------y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lf 555 (1856)
T KOG1808|consen 486 ----------YVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLF 555 (1856)
T ss_pred ----------hhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhh
Confidence 0111344555666666555 789999999999999999999999987 778888777777777889999
Q ss_pred eecCCCCC-----CCCHhHHhhhccceeecCCC
Q 017575 211 GSGNPEEG-----ELRPQLLDRFGMHAQVGTVR 238 (369)
Q Consensus 211 ~t~n~~~~-----~l~~al~~R~~~~i~~~~~~ 238 (369)
+|-||... .+..++++||.. +++....
T Consensus 556 atqn~~~~y~grk~lsRa~~~rf~e-~~f~~~~ 587 (1856)
T KOG1808|consen 556 ATQNPPGTYGGRKILSRALRNRFIE-LHFDDIG 587 (1856)
T ss_pred hhccCccccchhhhhhhcccccchh-hhhhhcC
Confidence 99997643 278899999976 6666553
No 405
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3e-09 Score=97.49 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 16 ~~l~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (275)
T PRK13639 16 EALKGINFKA---EKGEMVALLGPNGAGKSTLFLHFNGILKPTS 56 (275)
T ss_pred eeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4678888888 7787 99999999999999999999998765
No 406
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=5.4e-09 Score=96.07 Aligned_cols=40 Identities=33% Similarity=0.384 Sum_probs=36.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 24 ~vl~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 64 (280)
T PRK13633 24 LALDDVNLEV---KKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64 (280)
T ss_pred ceeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4788899998 7787 99999999999999999999998765
No 407
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=6.4e-09 Score=95.50 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=75.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhhhhccc-cch
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRESVVKGE-ELS 117 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 117 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..+. .+.+... .........+..+++... .+.
T Consensus 21 ~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~~~~i~~v~q~~~~~~~ 95 (279)
T PRK13650 21 YTLNDVSFHV---KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE--ENVWDIRHKIGMVFQNPDNQFV 95 (279)
T ss_pred eeeeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc--CcHHHHHhhceEEEcChHHhcc
Confidence 3677888888 6777 9999999999999999999999876531 1212111 011111122222233211 111
Q ss_pred hhhhcccccc----CCCCC-----chHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-CCCCHHH
Q 017575 118 ITFSKINMVD----LPLGA-----TEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV-NLLDDHL 179 (369)
Q Consensus 118 ~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~-~~l~~~~ 179 (369)
..++...+.. ..... ........+++..........++.|..++ .+|.++++||| ..+|+..
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 175 (279)
T PRK13650 96 GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 (279)
T ss_pred cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1122111110 00000 01112222222222222222333333222 38999999999 8999999
Q ss_pred HHHHHHHHhc
Q 017575 180 VDVLLDSAAS 189 (369)
Q Consensus 180 ~~~L~~~l~~ 189 (369)
...+++.+.+
T Consensus 176 ~~~l~~~l~~ 185 (279)
T PRK13650 176 RLELIKTIKG 185 (279)
T ss_pred HHHHHHHHHH
Confidence 9999888864
No 408
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=5.1e-09 Score=94.81 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=36.3
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.-++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.+
T Consensus 13 ~~~~~~~~il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 13 SFFYGDFQALHDISLEF---EQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EEEECCeeeecceeEEE---eCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33355555788889998 6777 99999999999999999999863
No 409
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=3.6e-09 Score=94.68 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=34.3
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+.+.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 14 ~l~~is~~i---~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~ 53 (235)
T cd03299 14 KLKNVSLEV---ERGDYFVILGPTGSGKSVLLETIAGFIKPDS 53 (235)
T ss_pred eeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 577778888 6776 99999999999999999999998765
No 410
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=6.9e-09 Score=95.45 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=34.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.+++.+.+.+ ..|. +.|+||+|+|||||+++|++++++.
T Consensus 21 ~~l~~v~l~i---~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 21 PALNDISFSI---PRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred cceeeEEEEE---cCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 4777888888 7787 9999999999999999999999765
No 411
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=5e-09 Score=104.37 Aligned_cols=47 Identities=30% Similarity=0.436 Sum_probs=39.6
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++
T Consensus 10 nl~~~~~~~~il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 10 NITKTFGGVKALDNVSLKV---RAGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eeEEEeCCeEeecceeEEE---eCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444556556788999998 7787 999999999999999999999975
No 412
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=8.8e-09 Score=92.12 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=35.3
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 16 ~~l~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (234)
T cd03251 16 PVLRDISLDI---PAGETVALVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred cceeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhccccCCC
Confidence 4678888888 7787 99999999999999999999998765
No 413
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=3.7e-09 Score=97.33 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=37.3
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++..++...+++.+++.+ ..|. ++|+||+|+|||||+++|+++.+
T Consensus 45 l~~~~~~~~il~~is~~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 45 LNVFYGDEQALDDVSMDI---PENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred EEEEECCEeeEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 333455556788888888 7787 99999999999999999999985
No 414
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.73 E-value=1.1e-08 Score=103.72 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=76.8
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+.+.+++.+ .+|. ++|+||+|+|||||+++|+++.++.++.. +.+... .+.......+....|....++
T Consensus 356 ~~il~~i~l~i---~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~i~~v~Q~~~lf~ 430 (582)
T PRK11176 356 VPALRNINFKI---PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD--YTLASLRNQVALVSQNVHLFN 430 (582)
T ss_pred CccccCceEEe---CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh--cCHHHHHhhceEEccCceeec
Confidence 34788888888 6777 99999999999999999999998875321 111111 111222223333333332222
Q ss_pred hhhhccccccCCCC-CchHhhh------cccchh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-C
Q 017575 118 ITFSKINMVDLPLG-ATEDRVC------GTIDIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 118 ~~~~~~~~~~~~~~-~~~~~~~------~~~~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~ 173 (369)
.+++.++...... ...+++. +..+.. ..+++|+++ ..-++....+|.++++||| .
T Consensus 431 -~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpts 509 (582)
T PRK11176 431 -DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509 (582)
T ss_pred -chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 2232222211011 1222211 111111 112333332 1111112238999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|++....+.+.+.+
T Consensus 510 aLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 510 ALDTESERAIQAALDE 525 (582)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999888888865
No 415
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=4.3e-09 Score=94.25 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=34.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+.+.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 15 ~~l~~i~~~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 55 (236)
T cd03253 15 PVLKDVSFTI---PAGKKVAIVGPSGSGKSTILRLLFRFYDVSS 55 (236)
T ss_pred ceeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 4677788888 6777 99999999999999999999998765
No 416
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=8.1e-09 Score=105.38 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=41.8
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||||||||+++|++..++..
T Consensus 6 nls~~~g~~~~l~~vs~~i---~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~ 55 (638)
T PRK10636 6 SLQIRRGVRVLLDNATATI---NPGQKVGLVGKNGCGKSTLLALLKNEISADG 55 (638)
T ss_pred EEEEEeCCceeecCcEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3445567777889999999 7787 99999999999999999999987765
No 417
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=6.8e-09 Score=87.11 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=36.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.+++.+++.+ +.|. +.+.||+||||||+++.+++...+..+
T Consensus 19 ~~le~vsL~i---a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G 60 (259)
T COG4525 19 SALEDVSLTI---ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60 (259)
T ss_pred hhhhccceee---cCCCEEEEEcCCCccHHHHHHHHhcCcCcccc
Confidence 3789999999 7887 999999999999999999999998763
No 418
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=9.1e-09 Score=93.07 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=35.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++
T Consensus 13 ~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 13 WYGEKQALNDINLPI---YENKITALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred EECCeeeeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 344445678888888 6777 999999999999999999998753
No 419
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.4e-07 Score=90.77 Aligned_cols=72 Identities=25% Similarity=0.412 Sum_probs=53.6
Q ss_pred CCeEEEeCCCCCC----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh-hhccce
Q 017575 164 RGILYVDEVNLLD----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD-RFGMHA 232 (369)
Q Consensus 164 ~~vl~lDE~~~l~----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~-R~~~~i 232 (369)
|.++|+||++.+- .++...|+.+|+.-. .....++++++|- +..+++++++ ||+.-+
T Consensus 279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnr-p~sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNR-PDSLDPALRRGRFDREV 346 (693)
T ss_pred CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCC-ccccChhhhcCCCccee
Confidence 7899999996554 356788888887411 2346778888884 4469999997 999989
Q ss_pred eecCCCCHHHHHHHHH
Q 017575 233 QVGTVRDAELRVKIVE 248 (369)
Q Consensus 233 ~~~~~~~~~~~~~il~ 248 (369)
.+..| +...+.+|+.
T Consensus 347 ~IgiP-~~~~RldIl~ 361 (693)
T KOG0730|consen 347 EIGIP-GSDGRLDILR 361 (693)
T ss_pred eecCC-CchhHHHHHH
Confidence 99988 4566667755
No 420
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.72 E-value=1.9e-08 Score=89.10 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|++..++..
T Consensus 18 ~~l~~i~~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 58 (221)
T cd03244 18 PVLKNISFSI---KPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58 (221)
T ss_pred ccccceEEEE---CCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4788889998 6777 99999999999999999999987765
No 421
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.72 E-value=5.3e-09 Score=103.85 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=39.4
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 4 l~~~~~~~~il~~vs~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (491)
T PRK10982 4 ISKSFPGVKALDNVNLKV---RPHSIHALMGENGAGKSTLLKCLFGIYQKDS 52 (491)
T ss_pred eEEEeCCEEeeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence 333455555788889998 7787 89999999999999999999997764
No 422
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=7.3e-09 Score=94.07 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=37.3
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
++.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++
T Consensus 18 l~~~~~~~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 18 LNLWYGEKQALKNVSMQI---PKNSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred eEEEeCCeeeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 333345545788888888 7777 999999999999999999999863
No 423
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.71 E-value=2.1e-08 Score=90.47 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=32.2
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+++.+++.+ ..|. +.|+||||+|||||+++|+++.+.
T Consensus 11 ~l~~vsl~i---~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~ 48 (248)
T PRK03695 11 RLGPLSAEV---RAGEILHLVGPNGAGKSTLLARMAGLLPG 48 (248)
T ss_pred eecceEEEE---cCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 566777887 6777 999999999999999999999864
No 424
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.3e-07 Score=95.94 Aligned_cols=159 Identities=21% Similarity=0.272 Sum_probs=93.3
Q ss_pred CCccccChHHHHHHhhhhhc----c---------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVI----D---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPE 100 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~----~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 100 (369)
+|.++-|-..++..+...+. . ....++|++||||||||..|++++..+.... ..+.
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~----~kis------- 331 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN----RKIS------- 331 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc----cccc-------
Confidence 68888776666665544442 1 1234499999999999999999998885321 0000
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccch--hhhcCCCeEEEeCCCCCCHH
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGL--LAKANRGILYVDEVNLLDDH 178 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~a~~~vl~lDE~~~l~~~ 178 (369)
++......-.....|.. ++.+.... .....|.|+|+||++.+.|.
T Consensus 332 ------------------------ffmrkgaD~lskwvgEa---------ERqlrllFeeA~k~qPSIIffdeIdGlapv 378 (1080)
T KOG0732|consen 332 ------------------------FFMRKGADCLSKWVGEA---------ERQLRLLFEEAQKTQPSIIFFDEIDGLAPV 378 (1080)
T ss_pred ------------------------hhhhcCchhhccccCcH---------HHHHHHHHHHHhccCceEEecccccccccc
Confidence 00000000000111110 00000000 11225789999999866552
Q ss_pred -----------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHHH
Q 017575 179 -----------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRVK 245 (369)
Q Consensus 179 -----------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~~ 245 (369)
+...|+.+|+. ......+.+|+++|-.+ .+++||++ ||+..+.++.| ..+.+..
T Consensus 379 rSskqEqih~SIvSTLLaLmdG-----------ldsRgqVvvigATnRpd-a~dpaLRRPgrfdref~f~lp-~~~ar~~ 445 (1080)
T KOG0732|consen 379 RSSKQEQIHASIVSTLLALMDG-----------LDSRGQVVVIGATNRPD-AIDPALRRPGRFDREFYFPLP-DVDARAK 445 (1080)
T ss_pred ccchHHHhhhhHHHHHHHhccC-----------CCCCCceEEEcccCCcc-ccchhhcCCcccceeEeeeCC-chHHHHH
Confidence 55677777764 11234688999999543 59999976 78887778777 5666767
Q ss_pred HHHH
Q 017575 246 IVEE 249 (369)
Q Consensus 246 il~~ 249 (369)
|+..
T Consensus 446 Il~I 449 (1080)
T KOG0732|consen 446 ILDI 449 (1080)
T ss_pred HHHH
Confidence 7664
No 425
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.71 E-value=1.7e-08 Score=88.50 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.++.. +.+... .........+...++....++
T Consensus 22 ~~l~~isl~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~~~~~i~~v~q~~~~~~- 95 (207)
T cd03369 22 PVLKNVSFKV---KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIST--IPLEDLRSSLTIIPQDPTLFS- 95 (207)
T ss_pred ccccCceEEE---CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHH--CCHHHHHhhEEEEecCCcccC-
Confidence 4788888888 6777 99999999999999999999987765311 111100 000111112222223222221
Q ss_pred hhhccccccCCCCCchHhhhcccch---hHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 119 TFSKINMVDLPLGATEDRVCGTIDI---EKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.++...+.... ......+...++. ...+++|+.+ ...+.....+|.++++||| ..+|+.....+.+++.+
T Consensus 96 ~tv~~~l~~~~-~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 170 (207)
T cd03369 96 GTIRSNLDPFD-EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170 (207)
T ss_pred ccHHHHhcccC-CCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12211111000 0111111111111 1112222221 1111112238999999999 79999999999999875
No 426
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=6.5e-09 Score=94.06 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=35.6
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++++
T Consensus 12 ~~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 12 VHFGKNHAVKDVSMDF---PENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EEeCCeeEEecceEEE---cCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3344445778888888 6777 99999999999999999999985
No 427
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.71 E-value=7.9e-09 Score=107.23 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=78.8
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||+|||||||+++|+++.++.++.. +.+.. ..+...+...+..+.|....+
T Consensus 492 ~~vL~~isl~i---~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~--~~~~~~lr~~i~~v~Q~~~lf- 565 (710)
T TIGR03796 492 PPLIENFSLTL---QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPRE--EIPREVLANSVAMVDQDIFLF- 565 (710)
T ss_pred CCcccceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHH--HCCHHHHHhheeEEecCChhh-
Confidence 45788899998 6777 99999999999999999999998875321 11111 112222333333333333222
Q ss_pred hhhhccccccCCCCCchHhhh------cccchh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRVC------GTIDIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~ 174 (369)
..+++.++.......+.+++. +..+.. ..+++|+++ ..-++....+|.++++||| ..
T Consensus 566 ~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~ 645 (710)
T TIGR03796 566 EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645 (710)
T ss_pred hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcccc
Confidence 223322222111112222221 111111 112333322 1111112238999999999 79
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+.+.+.+
T Consensus 646 LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 646 LDPETEKIIDDNLRR 660 (710)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998864
No 428
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.71 E-value=2.5e-07 Score=91.47 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=73.5
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhc-CCceeeecce---------eeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAAS-GWNTVEREGI---------SISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~-~~~~~~~~~~---------~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
.+|..|++|||+..++.....++.++.. +.-..++.+. +.....+ +|+.+|. .-.|+|+. -|.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP--IICICNd---LYaPaLR~Lr~~A 460 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP--IICICND---LYAPALRPLRPFA 460 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC--EEEEecC---ccchhhhhcccce
Confidence 4688999999999999999999999873 2222221111 0111122 4555663 23556554 255
Q ss_pred cceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCch
Q 017575 230 MHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRG 309 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~ 309 (369)
..+.+.+|+..-..+++ ++| |..+...++..++..|++++.. ..|.
T Consensus 461 ~ii~f~~p~~s~Lv~RL--------------------------~~I----C~rE~mr~d~~aL~~L~el~~~----DIRs 506 (877)
T KOG1969|consen 461 EIIAFVPPSQSRLVERL--------------------------NEI----CHRENMRADSKALNALCELTQN----DIRS 506 (877)
T ss_pred EEEEecCCChhHHHHHH--------------------------HHH----HhhhcCCCCHHHHHHHHHHhcc----hHHH
Confidence 55667666433222111 122 3334678888899999998864 4577
Q ss_pred hHHHHHHHHHHHHHc
Q 017575 310 DIVSNRAAKALAALK 324 (369)
Q Consensus 310 ~~~ll~~a~a~A~l~ 324 (369)
.++-+++....+...
T Consensus 507 CINtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 507 CINTLQFLASNVDRR 521 (877)
T ss_pred HHHHHHHHHHhcccc
Confidence 777777665554443
No 429
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.71 E-value=7.7e-09 Score=94.38 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=35.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 27 ~~l~~vsl~i---~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~ 67 (267)
T PRK15112 27 EAVKPLSFTL---REGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67 (267)
T ss_pred ceeeeeeEEe---cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 4788888888 7777 99999999999999999999998765
No 430
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=4.8e-09 Score=95.72 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=37.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++
T Consensus 24 nl~~~~~~~~il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 24 DVSVFYGEKQALFDVDLDI---PEKTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred eEEEEECCEEEEEEEEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 3444456555778888888 6777 999999999999999999999863
No 431
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.70 E-value=1.2e-08 Score=93.15 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++++.
T Consensus 17 ~~~l~~isl~I---~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~ 56 (275)
T cd03289 17 NAVLENISFSI---SPGQRVGLLGRTGSGKSTLLSAFLRLLNT 56 (275)
T ss_pred CcceeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhhhcCC
Confidence 34788899998 7887 999999999999999999999973
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.70 E-value=4.1e-09 Score=86.84 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=63.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFS 121 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (369)
.+++.+.+.+ ..|. +.|+||+|+|||||+++|+++.++..+....+.. ..+..
T Consensus 14 ~~l~~~~~~~---~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~i~~------------- 67 (144)
T cd03221 14 LLLKDISLTI---NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VKIGY------------- 67 (144)
T ss_pred eEEEeeEEEE---CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EEEEE-------------
Confidence 3566677777 6777 8999999999999999999999765421100000 00000
Q ss_pred ccccccCCCCCchHhhhcccchhHHhhhcccc-cccchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 122 KINMVDLPLGATEDRVCGTIDIEKALTEGVKA-FEPGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.+ . +++|+.. ...+.....+|.++++||| ..+|+.....+.+.+.+
T Consensus 68 ------~~-~---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 68 ------FE-Q---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred ------Ec-c---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 00 0 2233321 1122222347899999999 79999999999999875
No 433
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=6.7e-09 Score=93.90 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=37.0
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.+
T Consensus 10 l~~~~~~~~~l~~~sl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 10 VHLSYGNYEALHGISLDF---EEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eEEEECCeeeeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 333455555778888888 6777 99999999999999999999985
No 434
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.1e-07 Score=86.43 Aligned_cols=70 Identities=10% Similarity=0.212 Sum_probs=51.9
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHH
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAEL 242 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~ 242 (369)
...|++||+++++.....++|++.|++ .|.+..+|.+++. +..+.+.+++||.. +.+.+++. +.
T Consensus 107 ~~KV~iI~~a~~m~~~AaNaLLKtLEE-------------Pp~~~~fiL~t~~-~~~llpTI~SRC~~-~~~~~~~~-~~ 170 (325)
T PRK06871 107 GNKVVYIQGAERLTEAAANALLKTLEE-------------PRPNTYFLLQADL-SAALLPTIYSRCQT-WLIHPPEE-QQ 170 (325)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhcC-------------CCCCeEEEEEECC-hHhCchHHHhhceE-EeCCCCCH-HH
Confidence 456999999999999999999999997 2444444444442 34589999999986 88888854 44
Q ss_pred HHHHHH
Q 017575 243 RVKIVE 248 (369)
Q Consensus 243 ~~~il~ 248 (369)
....+.
T Consensus 171 ~~~~L~ 176 (325)
T PRK06871 171 ALDWLQ 176 (325)
T ss_pred HHHHHH
Confidence 444444
No 435
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.70 E-value=1.6e-08 Score=102.60 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ .+|. ++|+||+|+|||||+++|++++++.+
T Consensus 354 ~iL~~inl~i---~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~ 394 (576)
T TIGR02204 354 PALDGLNLTV---RPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred ccccceeEEe---cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 4788888888 7777 99999999999999999999998765
No 436
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.70 E-value=5.7e-09 Score=93.87 Aligned_cols=41 Identities=34% Similarity=0.420 Sum_probs=34.3
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.
T Consensus 9 ~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 9 SVEDKEILKGVNLTV---KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EECCEEEEeccceEE---cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344445677888888 7787 9999999999999999999995
No 437
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.2e-08 Score=99.05 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=39.5
Q ss_pred CCccccChH-HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQE-EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~-~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+++. .+...+++.+ ..|+ +.|+|++||||||+++.+++.+++..
T Consensus 325 ~l~~~y~~g~~~l~~l~~t~---~~g~~talvG~SGaGKSTLl~lL~G~~~~~~ 375 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLTI---KAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375 (559)
T ss_pred ceEEecCCCCcccCCceeEe---cCCcEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 344445443 5788888888 6776 99999999999999999999998765
No 438
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.69 E-value=2.6e-08 Score=89.64 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=26.6
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. +.|+||||+|||||+++|+++.++..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~ 53 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDE 53 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 3566 89999999999999999999998765
No 439
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.69 E-value=9.1e-09 Score=106.34 Aligned_cols=141 Identities=22% Similarity=0.196 Sum_probs=79.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
+.+++.+++.+ ..|. +.|+||+|||||||+++|+++..+.++.. +.+.. ..+...++..+..+.|....++
T Consensus 466 ~~vL~~isl~i---~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~--~~~~~~lr~~i~~v~Q~~~lf~ 540 (686)
T TIGR03797 466 PLILDDVSLQI---EPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA--GLDVQAVRRQLGVVLQNGRLMS 540 (686)
T ss_pred ccceeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC--cCCHHHHHhccEEEccCCccCc
Confidence 45788999998 6777 99999999999999999999998875322 21221 1223333334444334333322
Q ss_pred hhhhccccccCCCCCchHhhh------cccchh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRVC------GTIDIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~ 174 (369)
.+++.++..... .+.+++. +..+.. ..+++|+++ ..-.+....+|.++++||| ..
T Consensus 541 -gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 541 -GSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred -ccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 222222211111 1222211 111111 112333322 1111111238999999999 78
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+.+.+.+
T Consensus 619 LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 619 LDNRTQAIVSESLER 633 (686)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988875
No 440
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=7.6e-09 Score=94.03 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=36.8
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|++..+
T Consensus 18 l~~~~~~~~~l~~vs~~i---~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 18 MNLWYGQHHALKNINLSI---PENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEEECCeeeEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 333455555778888888 6777 99999999999999999999985
No 441
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.69 E-value=1.2e-08 Score=90.78 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|++..+
T Consensus 20 ~~~l~~vsl~i---~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHV---ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEE---cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 45788888888 6777 99999999999999999999987
No 442
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=8.7e-09 Score=93.23 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=36.8
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+..++...+++.+++.+ ..|. +.|+||+|+|||||+++|++..++
T Consensus 11 ~~~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 11 NIYYGDKQAVKNVNLDV---QRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EEEECCEEeeccceEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 33344445788888888 7787 899999999999999999999864
No 443
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.4e-09 Score=96.05 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=35.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 21 ~~L~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 61 (290)
T PRK13634 21 RALYDVNVSI---PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61 (290)
T ss_pred cceeeEEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 4788889998 7787 99999999999999999999998765
No 444
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=2.8e-07 Score=86.40 Aligned_cols=70 Identities=14% Similarity=0.305 Sum_probs=52.5
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCce-EEEeecCCCCCCCCHhHHhhhccceeecCCCCH
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARF-ILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDA 240 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~ 240 (369)
+...|++||+++++.....++|++.||+ .|.+. +++.|.+| ..+.+.+++||.. +.+++|+ .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------------Pp~~t~fiL~t~~~--~~lLpTIrSRCq~-~~~~~~~-~ 169 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEE-------------PPENTWFFLACREP--ARLLATLRSRCRL-HYLAPPP-E 169 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcC-------------CCCCeEEEEEECCh--hhChHHHHhcccc-ccCCCCC-H
Confidence 3456999999999999999999999997 23444 44444444 4599999999986 8888884 4
Q ss_pred HHHHHHHH
Q 017575 241 ELRVKIVE 248 (369)
Q Consensus 241 ~~~~~il~ 248 (369)
+.....+.
T Consensus 170 ~~~~~~L~ 177 (334)
T PRK07993 170 QYALTWLS 177 (334)
T ss_pred HHHHHHHH
Confidence 55545544
No 445
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.68 E-value=1e-08 Score=102.78 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=77.2
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.++.. +.+... .+...+...+..+.|....+ .
T Consensus 336 ~il~~i~l~i---~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~--~~~~~lr~~i~~v~Q~~~lf-~ 409 (529)
T TIGR02857 336 PALRPVSFTV---PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD--ADADSWRDQIAWVPQHPFLF-A 409 (529)
T ss_pred ccccceeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh--CCHHHHHhheEEEcCCCccc-C
Confidence 4788888888 7777 99999999999999999999998875321 222111 12222222333333332222 2
Q ss_pred hhhccccccCCCCCchHhhh------cccchh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CCC
Q 017575 119 TFSKINMVDLPLGATEDRVC------GTIDIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NLL 175 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~------~~~~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l 175 (369)
.+++.++.......+++.+. +..+.. ..+++|+++ ...++....+|.++++||| ..+
T Consensus 410 ~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l 489 (529)
T TIGR02857 410 GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489 (529)
T ss_pred cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 23322221111111222111 110100 112333322 1111122238999999999 789
Q ss_pred CHHHHHHHHHHHhc
Q 017575 176 DDHLVDVLLDSAAS 189 (369)
Q Consensus 176 ~~~~~~~L~~~l~~ 189 (369)
|++....+.+.+.+
T Consensus 490 D~~~~~~i~~~l~~ 503 (529)
T TIGR02857 490 DAETEALVTEALRA 503 (529)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888875
No 446
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.68 E-value=1.3e-08 Score=98.89 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=77.9
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee---ecCCCCCCCCCCcchhhhhhhhhhhcccc--
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV---VVGDPYNSDPEDPEAMGIEVRESVVKGEE-- 115 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 115 (369)
-.+++.+++.+ ..|. +.|+|++||||||++|+|+++.++.++ +.+.++................+||+...
T Consensus 304 ~~Av~~VSf~l---~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 304 VKAVDDVSFDL---REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred eeeeeeeeeEe---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccccc
Confidence 35688999999 7888 889999999999999999999998652 22322111111111122233333332211
Q ss_pred chhhhhcc----ccc-cCCC--CCchHhh---hcccchh--------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCC
Q 017575 116 LSITFSKI----NMV-DLPL--GATEDRV---CGTIDIE--------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLL 175 (369)
Q Consensus 116 ~~~~~~~~----~~~-~~~~--~~~~~~~---~~~~~~~--------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l 175 (369)
-+..++.. ++. .... ......+ ....++. ..+++|+++.. -....-.+|.++++||| ..|
T Consensus 381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaL 460 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460 (539)
T ss_pred CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcccc
Confidence 11111110 110 0000 0011111 1111111 33445554322 11111138999999999 899
Q ss_pred CHHHHHHHHHHHhc
Q 017575 176 DDHLVDVLLDSAAS 189 (369)
Q Consensus 176 ~~~~~~~L~~~l~~ 189 (369)
|+.++..++++|.+
T Consensus 461 Dvsvqa~VlnLl~~ 474 (539)
T COG1123 461 DVSVQAQVLNLLKD 474 (539)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998888865
No 447
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=9.9e-09 Score=94.00 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.5
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++.-+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 26 l~~~~~~~~~l~~vs~~i---~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 26 VKVFYGGFLALVDVHLKI---PAKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred EEEEeCCeEEEeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 333345545778888888 6777 99999999999999999999975
No 448
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.68 E-value=1.1e-08 Score=91.86 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=35.0
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 17 ~~l~~i~~~i---~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 57 (238)
T cd03249 17 PILKGLSLTI---PPGKTVALVGSSGCGKSTVVSLLERFYDPTS 57 (238)
T ss_pred cceeceEEEe---cCCCEEEEEeCCCCCHHHHHHHHhccCCCCC
Confidence 3677888888 6777 99999999999999999999997765
No 449
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.2e-08 Score=92.27 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=36.4
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.
T Consensus 14 ~~~~~il~~~s~~i---~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 14 YHKHQVLKNINMDF---PERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred ECCeeEecceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 44445778888888 6777 9999999999999999999998764
No 450
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=9.1e-09 Score=95.55 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 21 ~~l~~vsl~i---~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~ 61 (305)
T PRK13651 21 KALDNVSVEI---NQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61 (305)
T ss_pred cceeeeEEEE---eCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 4788889998 6777 99999999999999999999998765
No 451
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.2e-08 Score=92.17 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=34.4
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.+
T Consensus 13 ~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 13 YGDFQALKKINLDI---EENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred ECCceeeecceEEE---cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 44445677888888 6787 99999999999999999999864
No 452
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.67 E-value=1.8e-08 Score=88.76 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 45 KLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 3 l~~vs~~i---~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s 41 (213)
T PRK15177 3 LDKTDFVM---GYHEHIGILAAPGSGKTTLTRLLCGLDAPDE 41 (213)
T ss_pred eeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 34566666 6777 89999999999999999999998765
No 453
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=6e-09 Score=96.11 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++.+
T Consensus 21 ~~l~~vsl~i---~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~ 61 (287)
T PRK13641 21 KGLDNISFEL---EEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61 (287)
T ss_pred cceeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4788899998 7887 99999999999999999999998865
No 454
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.6e-08 Score=91.70 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|++..++..
T Consensus 15 ~~~~~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~ 64 (257)
T PRK14246 15 RLYLYINDKAILKDITIKI---PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD 64 (257)
T ss_pred eEEEecCCceeEeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3444457777888999998 7787 99999999999999999999987654
No 455
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=6e-09 Score=94.21 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=34.8
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++..
T Consensus 15 ~~~~~~l~~is~~i---~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 15 YGSKQILFDINLDI---YKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred ECCeeeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44445778888888 7787 99999999999999999999975
No 456
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.67 E-value=1.2e-08 Score=102.54 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=36.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|||||||++++++..++.+
T Consensus 331 ~~~l~~~~~~i---~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 372 (544)
T TIGR01842 331 KPTLRGISFRL---QAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372 (544)
T ss_pred ccccccceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45788899998 6776 99999999999999999999998775
No 457
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.67 E-value=1e-08 Score=93.16 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=38.8
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 12 l~~~~~~~~il~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 60 (258)
T PRK11701 12 LTKLYGPRKGCRDVSFDL---YPGEVLGIVGESGSGKTTLLNALSARLAPDA 60 (258)
T ss_pred eEEEcCCceeeeeeeEEE---eCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 333345445678888888 6777 99999999999999999999998765
No 458
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.67 E-value=7.8e-09 Score=107.20 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=78.6
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCC-CCCCcchhhhhhhhhhhccccchhh
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNS-DPEDPEAMGIEVRESVVKGEELSIT 119 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++..+.++....+-.. ...+...+...+..+.|....++ .
T Consensus 487 ~~iL~~isl~i---~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 562 (708)
T TIGR01193 487 SNILSDISLTI---KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-G 562 (708)
T ss_pred CcceeceeEEE---CCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh-H
Confidence 45788889888 6776 99999999999999999999998775321111100 11122233333333333333322 2
Q ss_pred hhccccccC-CCCCchHhhh------cccchh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CCC
Q 017575 120 FSKINMVDL-PLGATEDRVC------GTIDIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NLL 175 (369)
Q Consensus 120 ~~~~~~~~~-~~~~~~~~~~------~~~~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l 175 (369)
+++.++... ....+.+++. +..+.. ..+++|+++ ..-++....+|.++++||| ..+
T Consensus 563 TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~L 642 (708)
T TIGR01193 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642 (708)
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 333222211 1112222211 111111 112233322 1111111238999999999 799
Q ss_pred CHHHHHHHHHHHhc
Q 017575 176 DDHLVDVLLDSAAS 189 (369)
Q Consensus 176 ~~~~~~~L~~~l~~ 189 (369)
|++....+.+.+.+
T Consensus 643 D~~te~~i~~~L~~ 656 (708)
T TIGR01193 643 DTITEKKIVNNLLN 656 (708)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998888864
No 459
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.6e-08 Score=92.22 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=36.5
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 16 v~~~~~~~~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 16 LNVYYGSFLAVKNVWLDI---PKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred eEEEECCEEEeecceEEE---cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 333345555778888888 6777 99999999999999999999865
No 460
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=8.9e-09 Score=92.83 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=37.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++..+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 7 ~l~~~~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 7 NLNLFYGKKQALFDINMQI---EQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred eeEEEECCEeeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3344455555778888888 6777 99999999999999999999874
No 461
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=1.1e-08 Score=89.16 Aligned_cols=134 Identities=21% Similarity=0.243 Sum_probs=77.0
Q ss_pred hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec--CCCCC-C----CCCCcchhhhhhhhhhhc
Q 017575 41 QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV--GDPYN-S----DPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 41 ~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~--~~~~~-~----~~~~~~~~~~~~~~~~~~ 112 (369)
...+++.+++.+ ..|. +.|+|+||+|||||+|.|++..+|..+.. ...+. . ...++++.-.+....
T Consensus 39 ~~~aL~disf~i---~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l--- 112 (249)
T COG1134 39 EFWALKDISFEI---YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYL--- 112 (249)
T ss_pred eEEEecCceEEE---eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHH---
Confidence 334688899998 6787 99999999999999999999999986321 11111 1 111222211111000
Q ss_pred cccchhhhhccccccCCC---CCchHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-CCCCHHHH
Q 017575 113 GEELSITFSKINMVDLPL---GATEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV-NLLDDHLV 180 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~-~~l~~~~~ 180 (369)
+..+..+.. +...+.+...-++..-+..+.+.+..|+.++ .+|+++++||+ .--|+..+
T Consensus 113 ---------~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 113 ---------RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred ---------HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence 000110000 0111222222233333444555566666544 28999999999 67788777
Q ss_pred HHHHHHHhc
Q 017575 181 DVLLDSAAS 189 (369)
Q Consensus 181 ~~L~~~l~~ 189 (369)
....+-|++
T Consensus 184 ~K~~~rl~e 192 (249)
T COG1134 184 EKCLERLNE 192 (249)
T ss_pred HHHHHHHHH
Confidence 777777665
No 462
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.1e-08 Score=93.36 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=36.5
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 27 ~~~~~~~~il~~vsl~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 27 HVYYGKKEAIKGIDMQF---EKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EEEECCeeeEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 33345555788888888 7787 99999999999999999999985
No 463
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.66 E-value=3.3e-08 Score=87.45 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+.+.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 14 ~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 55 (218)
T cd03290 14 LATLSNINIRI---PTGQLTMIVGQVGCGKSSLLLAILGEMQTLE 55 (218)
T ss_pred CcceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 34678888888 6777 99999999999999999999997654
No 464
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=9.9e-09 Score=93.26 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=36.9
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+.-+|...+.+.+++.+ ..|. +.|+|++|+|||||+++|+++.++
T Consensus 14 ~~~~~~~~il~~isl~i---~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 14 SFYYNTSKAIEGISMDI---YRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred EEEECCeEeecceEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 33345445778888888 6777 999999999999999999999863
No 465
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.6e-08 Score=92.63 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++..+|...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 30 nl~~~~~~~~il~~vs~~i---~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 30 NLNLFYGDKQALFDISMRI---PKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EEEEEECCeeEeeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3444455555778888888 7787 99999999999999999999976
No 466
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.2e-08 Score=93.96 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 21 ~~l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~ 61 (286)
T PRK13646 21 QAIHDVNTEF---EQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61 (286)
T ss_pred CceeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4788889998 7787 99999999999999999999998765
No 467
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.65 E-value=1.3e-08 Score=96.68 Aligned_cols=42 Identities=29% Similarity=0.466 Sum_probs=37.1
Q ss_pred hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 41 QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 41 ~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.+++.+++++ ..|. +.|+||+|+|||||+|.+.+.+++..
T Consensus 348 ~~pil~~isF~l---~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~ 390 (580)
T COG4618 348 KKPILKGISFAL---QAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390 (580)
T ss_pred CCcceecceeEe---cCCceEEEECCCCccHHHHHHHHHcccccCC
Confidence 345788999999 7787 99999999999999999999998765
No 468
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.5e-08 Score=93.46 Aligned_cols=40 Identities=33% Similarity=0.467 Sum_probs=35.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 20 ~~l~~vsl~i---~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~ 60 (288)
T PRK13643 20 RALFDIDLEV---KKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60 (288)
T ss_pred cceeeeEEEE---cCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 4778889998 7787 99999999999999999999998765
No 469
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.6e-08 Score=91.39 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+++..++...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++
T Consensus 8 ~l~~~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 8 NLDLFYGENQALKSINLPI---PARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred ccEEEECCeeeeecceEEe---cCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 3344455555788889998 7787 999999999999999999999874
No 470
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1e-08 Score=93.19 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=36.8
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.
T Consensus 16 ~~~~~~il~~is~~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (261)
T PRK14258 16 YYDTQKILEGVSMEI---YQSKVTAIIGPSGCGKSTFLKCLNRMNELE 60 (261)
T ss_pred EeCCeeEeeceEEEE---cCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345445678888888 7787 9999999999999999999999763
No 471
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.65 E-value=2.3e-08 Score=90.38 Aligned_cols=46 Identities=24% Similarity=0.169 Sum_probs=35.9
Q ss_pred cccChH-HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 37 AIVGQE-EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 37 ~i~G~~-~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.-||.. .+++.++ .+ ..|. +.|+||+|+|||||+++|+++.++..+
T Consensus 8 ~~y~~~~~~l~~i~-~i---~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 8 HRYGPNSFKLHRLP-VP---REGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred eeecCcchhhhcCC-CC---CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 334433 4667776 34 6777 999999999999999999999987753
No 472
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.65 E-value=7.3e-09 Score=94.22 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.++..+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 38 ~il~~is~~i---~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~ 78 (264)
T PRK13546 38 FALDDISLKA---YEGDVIGLVGINGSGKSTLSNIIGGSLSPTV 78 (264)
T ss_pred EEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 3566778888 6777 99999999999999999999998765
No 473
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.65 E-value=4.1e-08 Score=85.91 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 19 ~il~~~s~~i---~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~ 59 (204)
T cd03250 19 FTLKDINLEV---PKGELVAIVGPVGSGKSSLLSALLGELEKLS 59 (204)
T ss_pred ceeeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 4788889998 7887 99999999999999999999998765
No 474
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.64 E-value=1e-08 Score=96.17 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=35.6
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+|++|||||||+++|++++++.+
T Consensus 35 ~~l~~vsl~i---~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~ 75 (331)
T PRK15079 35 KAVDGVTLRL---YEGETLGVVGESGCGKSTFARAIIGLVKATD 75 (331)
T ss_pred EEEeeEEEEE---cCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Confidence 4678889998 7887 99999999999999999999998764
No 475
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=9.3e-09 Score=94.53 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=35.2
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 21 ~~l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~ 61 (280)
T PRK13649 21 RALFDVNLTI---EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61 (280)
T ss_pred ceeeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3677888888 7787 89999999999999999999998765
No 476
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.9e-08 Score=91.93 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=37.6
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++.-++...+++.+++.+ ..|. +.|+|+||+|||||+++|+++++
T Consensus 29 ~l~~~~~~~~il~~vsl~i---~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 29 NLNLWYGEDHALKNINLDI---HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eeEEEECCcceeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3333455556788888888 7787 99999999999999999999985
No 477
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.64 E-value=7.6e-09 Score=102.99 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=39.2
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 10 l~~~~~~~~il~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 58 (501)
T PRK11288 10 IGKTFPGVKALDDISFDC---RAGQVHALMGENGAGKSTLLKILSGNYQPDA 58 (501)
T ss_pred eEEEECCEEEEeeeeEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344455545788888888 7787 99999999999999999999997764
No 478
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.3e-08 Score=93.05 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|+++.++.+
T Consensus 20 ~~il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 61 (272)
T PRK15056 20 HTALRDASFTV---PGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61 (272)
T ss_pred cEEEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 34677888888 6777 99999999999999999999997764
No 479
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=4.2e-08 Score=87.11 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=72.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee---ecCCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV---VVGDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. +.|+|++||||||++|++.++.++..+ +.+.++.... .......+...+..-. +..
T Consensus 27 ~avd~Vsf~i---~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--~~~~~~~v~elL~~Vg-l~~ 100 (268)
T COG4608 27 KAVDGVSFSI---KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--KEERRERVLELLEKVG-LPE 100 (268)
T ss_pred EEecceeEEE---cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--hhHHHHHHHHHHHHhC-CCH
Confidence 4688899999 7887 899999999999999999999987652 2222221111 1111111111111000 000
Q ss_pred hhhccccccCCCCCchHhhhcccchhHHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 119 TFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
..+.. ....++||+.+.. -+.....+|.+++.||| ..+|..+|..++.+|.+
T Consensus 101 ~~~~r-------------------yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 101 EFLYR-------------------YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred HHhhc-------------------CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHH
Confidence 00000 0122355655422 12222238999999999 89999999999988875
No 480
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.6e-08 Score=91.53 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=35.2
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.++...+.+.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 15 ~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 15 WYGEKHALYDITISI---PKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred EECCeeeeeeeEEEE---CCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 345455788888888 6777 99999999999999999999864
No 481
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=7.9e-09 Score=95.44 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+++.+ ..|. +.|+||+|+|||||+++|++++++..
T Consensus 26 il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 65 (289)
T PRK13645 26 ALNNTSLTF---KKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65 (289)
T ss_pred eeeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 678888888 6777 99999999999999999999998764
No 482
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.64 E-value=2.8e-08 Score=101.02 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. ++|+|++|||||||+++|+++.++.+
T Consensus 354 ~~il~~i~l~i---~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~ 395 (592)
T PRK10790 354 NLVLQNINLSV---PSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395 (592)
T ss_pred CceeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 34788888888 6777 99999999999999999999998875
No 483
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.2e-08 Score=92.71 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=36.6
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.+|+..+++.+++.+ ..|. +.|+||+|+|||||+++|++++++
T Consensus 17 ~~~~~~~l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 17 FYGNFMAVRDSHVPI---RKNEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred EeCCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence 346555778888888 7787 999999999999999999999865
No 484
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.64 E-value=1.9e-08 Score=91.01 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=36.8
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++...+++.+++.+ ..|. ++|+||||+|||||+++|+++.++..
T Consensus 13 ~~~~~~l~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 57 (253)
T TIGR02323 13 YGGGKGCRDVSFDL---YPGEVLGIVGESGSGKSTLLGCLAGRLAPDH 57 (253)
T ss_pred eCCceEeecceEEE---eCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 44444677888888 6777 99999999999999999999998765
No 485
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.64 E-value=1e-08 Score=103.29 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCccccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..+| ...+++.+++.+ ..|. +.|+||||||||||+++|++++++..
T Consensus 11 ~l~~~y~~~~~il~~vs~~i---~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~ 61 (556)
T PRK11819 11 RVSKVVPPKKQILKDISLSF---FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61 (556)
T ss_pred eEEEEeCCCCeeeeCceEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4444566 556888999999 7787 99999999999999999999997754
No 486
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.64 E-value=1.5e-08 Score=104.97 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=77.8
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.++.. +.+.. ..+...+...+..+.|....++
T Consensus 478 ~~vL~~i~l~i---~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~--~~~~~~lr~~i~~v~Q~~~lf~ 552 (694)
T TIGR03375 478 TPALDNVSLTI---RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR--QIDPADLRRNIGYVPQDPRLFY 552 (694)
T ss_pred ccceeeeeEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh--hCCHHHHHhccEEECCChhhhh
Confidence 34788888888 6777 99999999999999999999998875321 11111 1122223333333333322221
Q ss_pred hhhhccccccCCCCCchHhhhccc------chh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRVCGTI------DIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~ 174 (369)
.++..++.......+.+++...+ +.. ..+++|+++ ..-++....+|.++++||| ..
T Consensus 553 -~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~ 631 (694)
T TIGR03375 553 -GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSA 631 (694)
T ss_pred -hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 22222221111112222221111 000 112333322 1111122238999999999 79
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|++....+.+.+.+
T Consensus 632 LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 632 MDNRSEERFKDRLKR 646 (694)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988888864
No 487
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.6e-08 Score=91.43 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.0
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.
T Consensus 15 ~~~~~~l~~~s~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 15 YNKKKALNSVSLDF---YPNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred ECCeeeeeeeeEEE---cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44445778888888 6777 9999999999999999999984
No 488
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.4e-08 Score=101.82 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=39.8
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..+|...+++.+++.+ ..|. +.|+||||||||||+++|++++++..
T Consensus 7 ls~~~~~~~il~~vsl~i---~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~ 55 (530)
T PRK15064 7 ITMQFGAKPLFENISVKF---GGGNRYGLIGANGCGKSTFMKILGGDLEPSA 55 (530)
T ss_pred EEEEeCCcEeEeCCEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 344456556788899998 7777 99999999999999999999997754
No 489
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=4e-07 Score=84.48 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=53.1
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHH
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAEL 242 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~ 242 (369)
...|++||+++.+.....++|++.|++ .|.+..+|.+++. +..+.+.+++||.. +.+.+|+ .+.
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEE-------------Pp~~~~fiL~~~~-~~~lLpTIrSRCq~-i~~~~~~-~~~ 176 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEE-------------PSPGRYLWLISAQ-PARLPATIRSRCQR-LEFKLPP-AHE 176 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhC-------------CCCCCeEEEEECC-hhhCchHHHhhheE-eeCCCcC-HHH
Confidence 356999999999999999999999997 2345545555552 34588999999986 8888885 444
Q ss_pred HHHHHHH
Q 017575 243 RVKIVEE 249 (369)
Q Consensus 243 ~~~il~~ 249 (369)
....+..
T Consensus 177 ~~~~L~~ 183 (319)
T PRK08769 177 ALAWLLA 183 (319)
T ss_pred HHHHHHH
Confidence 4455553
No 490
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.63 E-value=4.2e-07 Score=81.95 Aligned_cols=226 Identities=12% Similarity=0.114 Sum_probs=121.0
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhc
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
..+.+++++++++..+.--.-.+..-|.|++||||+|||+...+.+..+... .+.+ +.+......
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-----~~~~----------~m~lelnaS 102 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSP-----HPTT----------SMLLELNAS 102 (360)
T ss_pred chhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCC-----CCch----------hHHHHhhcc
Confidence 3677888888886665444311122359999999999999999988887410 0000 000000000
Q ss_pred cccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 017575 113 GEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWN 192 (369)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~ 192 (369)
. ..+.+.....+. ++ +.......+.. .+-...++|||++.+..+.|++|...++..
T Consensus 103 -----------d--~rgid~vr~qi~---~f--ast~~~~~fst----~~~fKlvILDEADaMT~~AQnALRRviek~-- 158 (360)
T KOG0990|consen 103 -----------D--DRGIDPVRQQIH---LF--ASTQQPTTYST----HAAFKLVILDEADAMTRDAQNALRRVIEKY-- 158 (360)
T ss_pred -----------C--ccCCcchHHHHH---HH--Hhhccceeccc----cCceeEEEecchhHhhHHHHHHHHHHHHHh--
Confidence 0 000000000000 00 00000000111 122459999999999999999999877652
Q ss_pred eeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHH
Q 017575 193 TVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQ 272 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (369)
..+++|...+|+ +..+.+++..||.- +.+.+........++
T Consensus 159 -----------t~n~rF~ii~n~-~~ki~pa~qsRctr-frf~pl~~~~~~~r~-------------------------- 199 (360)
T KOG0990|consen 159 -----------TANTRFATISNP-PQKIHPAQQSRCTR-FRFAPLTMAQQTERQ-------------------------- 199 (360)
T ss_pred -----------ccceEEEEeccC-hhhcCchhhccccc-CCCCCCChhhhhhHH--------------------------
Confidence 234455556674 34689999999975 877776433322211
Q ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH------------HcCCCCCCHHHHHHHHhH
Q 017575 273 QQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAA------------LKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 273 ~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~------------l~~~~~v~~~~i~~a~~~ 340 (369)
.++ +..++..++++....+..++.. ..|.+.+.++.....-. ........+.|+++++++
T Consensus 200 shi----~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~ 271 (360)
T KOG0990|consen 200 SHI----RESEQKETNPEGYSALGRLSVG----DMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEK 271 (360)
T ss_pred HHH----HhcchhhcCHHHHHHHHHHhHH----HHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHH
Confidence 112 2233566677666665555543 34667666665433211 111234556677777776
Q ss_pred Hhcc
Q 017575 341 CLRH 344 (369)
Q Consensus 341 vl~~ 344 (369)
.+.-
T Consensus 272 il~~ 275 (360)
T KOG0990|consen 272 RMNG 275 (360)
T ss_pred HhcC
Confidence 5553
No 491
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.1e-08 Score=94.21 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=34.3
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
-++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++..
T Consensus 48 ~~~~~~il~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 48 YYGEFEAVKKVNADI---LSKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred EECCEEEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345445677888888 6777 89999999999999999999753
No 492
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.63 E-value=1.2e-08 Score=93.05 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=35.7
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 25 ~~il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s 66 (268)
T PRK10419 25 QTVLNNVSLSL---KSGETVALLGRSGCGKSTLARLLVGLESPSQ 66 (268)
T ss_pred eeeEeceeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 34678888888 6777 99999999999999999999987654
No 493
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.63 E-value=3.4e-08 Score=102.36 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=36.1
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+||||++++|+++.++.+
T Consensus 495 ~vL~~isl~i---~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 495 PVLKGLTFTL---HPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred ccccCceEEE---cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 4788899998 6777 99999999999999999999998875
No 494
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.4e-08 Score=91.57 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=35.0
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 22 ~l~~v~l~i---~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~ 61 (277)
T PRK13642 22 QLNGVSFSI---TKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61 (277)
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 678888888 6777 99999999999999999999998765
No 495
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.62 E-value=1.5e-08 Score=92.31 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++..
T Consensus 25 ~il~~isl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 65 (265)
T TIGR02769 25 PVLTNVSLSI---EEGETVGLLGRSGCGKSTLARLLLGLEKPAQ 65 (265)
T ss_pred EEeeCceeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4678888888 7787 99999999999999999999998765
No 496
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.62 E-value=1.9e-08 Score=89.74 Aligned_cols=34 Identities=38% Similarity=0.632 Sum_probs=29.3
Q ss_pred HhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 47 CLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 47 ~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.+++.+ ..|. +.|+||+|+|||||+++|+++.++
T Consensus 4 ~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 4 DLNLSL---KRGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred ceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 455566 6777 999999999999999999999986
No 497
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.62 E-value=1.7e-08 Score=102.27 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||++.|++..++.+
T Consensus 348 ~~~l~~i~~~i---~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 389 (585)
T TIGR01192 348 SQGVFDVSFEA---KAGQTVAIVGPTGAGKTTLINLLQRVYDPTV 389 (585)
T ss_pred CccccceeEEE---cCCCEEEEECCCCCCHHHHHHHHccCCCCCC
Confidence 34788888888 6777 99999999999999999999998765
No 498
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=2.1e-08 Score=93.29 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=37.1
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++..++...+++.+++.+ ..|. +.|+||+|+|||||+++|+++.+
T Consensus 51 l~~~~~~~~iL~~is~~i---~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 51 LDVYYGDDHALKGVSMDI---PEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred EEEEeCCeeeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 333456556788888888 6777 99999999999999999999985
No 499
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.62 E-value=4.9e-08 Score=98.76 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=77.6
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
+.+++.+++.+ ..|. +.|+||+|+||||+++++++..++.++.. +.+... .+...+...+..+.|....++
T Consensus 353 ~~il~~i~~~i---~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~ 427 (574)
T PRK11160 353 QPVLKGLSLQI---KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD--YSEAALRQAISVVSQRVHLFS 427 (574)
T ss_pred CcceecceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh--CCHHHHHhheeEEcccchhhc
Confidence 34788888888 6777 99999999999999999999998775321 111111 122223333333333332222
Q ss_pred hhhhccccccCCCCCchHhhh---cccchhH-----------------Hhhhcccc-cccchhhhcCCCeEEEeCC-CCC
Q 017575 118 ITFSKINMVDLPLGATEDRVC---GTIDIEK-----------------ALTEGVKA-FEPGLLAKANRGILYVDEV-NLL 175 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------------~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~l 175 (369)
.++..++.......+.+.+. ...+... .+++|+++ ..-.+....+|.++++||| ..+
T Consensus 428 -~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~l 506 (574)
T PRK11160 428 -ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506 (574)
T ss_pred -ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 22322221111112222211 1111111 12223221 1111111238999999999 799
Q ss_pred CHHHHHHHHHHHhc
Q 017575 176 DDHLVDVLLDSAAS 189 (369)
Q Consensus 176 ~~~~~~~L~~~l~~ 189 (369)
|++....+.+.+.+
T Consensus 507 D~~t~~~i~~~l~~ 520 (574)
T PRK11160 507 DAETERQILELLAE 520 (574)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888875
No 500
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.62 E-value=1.8e-08 Score=101.91 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=35.9
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.+
T Consensus 328 ~~~l~~i~~~i---~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~ 369 (569)
T PRK10789 328 HPALENVNFTL---KPGQMLGICGPTGSGKSTLLSLIQRHFDVSE 369 (569)
T ss_pred CccccCeeEEE---CCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 34788888888 6776 99999999999999999999998765
Done!