Query 017575
Match_columns 369
No_of_seqs 158 out of 2765
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8p_A Magnesium-chelatase 38 100.0 8.9E-35 3E-39 274.2 25.9 333 29-368 17-349 (350)
2 2r44_A Uncharacterized protein 100.0 1.1E-29 3.8E-34 237.8 14.6 277 35-367 26-326 (331)
3 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 2.1E-26 7.3E-31 224.8 18.7 259 37-347 23-291 (500)
4 3f8t_A Predicted ATPase involv 99.9 2.4E-26 8.1E-31 218.3 16.9 244 38-351 215-495 (506)
5 3f9v_A Minichromosome maintena 99.9 9.2E-26 3.2E-30 225.8 15.6 256 36-342 295-588 (595)
6 3k1j_A LON protease, ATP-depen 99.8 1.6E-20 5.4E-25 189.0 17.2 281 29-340 34-374 (604)
7 4b4t_J 26S protease regulatory 99.8 1.3E-18 4.4E-23 163.9 16.4 222 30-345 142-393 (405)
8 4b4t_I 26S protease regulatory 99.8 2.8E-19 9.5E-24 168.9 11.1 226 30-349 176-431 (437)
9 3pfi_A Holliday junction ATP-d 99.8 7.3E-18 2.5E-22 157.8 15.5 224 25-340 19-253 (338)
10 4b4t_M 26S protease regulatory 99.8 7.3E-18 2.5E-22 161.0 14.9 223 29-345 174-426 (434)
11 4b4t_H 26S protease regulatory 99.8 1.4E-17 4.9E-22 158.7 16.6 221 30-344 203-453 (467)
12 4b4t_L 26S protease subunit RP 99.8 1.1E-17 3.9E-22 159.8 15.8 221 30-344 175-425 (437)
13 3h4m_A Proteasome-activating n 99.7 3.1E-17 1.1E-21 149.7 17.0 228 28-346 9-263 (285)
14 4b4t_K 26S protease regulatory 99.7 7.3E-17 2.5E-21 154.0 18.2 225 30-347 166-420 (428)
15 3uk6_A RUVB-like 2; hexameric 99.7 2.9E-17 9.8E-22 155.5 15.4 143 164-344 190-333 (368)
16 2bjv_A PSP operon transcriptio 99.7 9.1E-18 3.1E-22 151.8 9.9 235 33-334 3-250 (265)
17 1ofh_A ATP-dependent HSL prote 99.7 2.2E-17 7.4E-22 152.3 12.0 246 37-343 16-301 (310)
18 1in4_A RUVB, holliday junction 99.7 2.1E-16 7.3E-21 147.6 17.0 221 32-342 21-251 (334)
19 1ojl_A Transcriptional regulat 99.7 2.2E-17 7.6E-22 152.2 9.8 233 37-336 3-247 (304)
20 1um8_A ATP-dependent CLP prote 99.7 6.6E-17 2.2E-21 153.6 13.3 169 157-344 131-368 (376)
21 1hqc_A RUVB; extended AAA-ATPa 99.7 2.2E-16 7.5E-21 146.7 16.2 222 31-341 7-238 (324)
22 3pvs_A Replication-associated 99.7 7.4E-17 2.5E-21 156.0 13.3 214 33-341 23-244 (447)
23 3eie_A Vacuolar protein sortin 99.7 7E-17 2.4E-21 150.2 11.2 203 30-323 12-237 (322)
24 2c9o_A RUVB-like 1; hexameric 99.7 2.5E-16 8.5E-21 153.3 15.5 135 164-345 296-441 (456)
25 3b9p_A CG5977-PA, isoform A; A 99.7 6.7E-16 2.3E-20 141.7 16.9 223 30-341 15-272 (297)
26 3vfd_A Spastin; ATPase, microt 99.7 5.1E-16 1.8E-20 148.1 16.7 221 31-341 110-365 (389)
27 3d8b_A Fidgetin-like protein 1 99.7 1.2E-15 4.1E-20 143.8 17.9 225 30-344 78-337 (357)
28 2qp9_X Vacuolar protein sortin 99.7 6.6E-16 2.2E-20 145.5 15.6 205 29-324 44-271 (355)
29 1xwi_A SKD1 protein; VPS4B, AA 99.7 5.2E-15 1.8E-19 137.4 21.2 203 30-322 6-231 (322)
30 1sxj_D Activator 1 41 kDa subu 99.7 5.3E-16 1.8E-20 145.7 14.2 226 25-339 27-261 (353)
31 4fcw_A Chaperone protein CLPB; 99.7 5.1E-16 1.8E-20 143.3 13.4 224 37-320 18-277 (311)
32 3hws_A ATP-dependent CLP prote 99.7 1.2E-16 4E-21 151.1 8.9 241 38-339 17-347 (363)
33 2qz4_A Paraplegin; AAA+, SPG7, 99.7 2.1E-16 7.3E-21 142.2 9.0 222 32-346 2-254 (262)
34 1lv7_A FTSH; alpha/beta domain 99.6 7.1E-16 2.4E-20 138.6 11.6 216 30-343 6-254 (257)
35 2chg_A Replication factor C sm 99.6 6.1E-15 2.1E-19 128.6 16.1 213 31-339 12-224 (226)
36 3m6a_A ATP-dependent protease 99.6 1.5E-16 5.1E-21 157.8 6.3 154 163-340 175-340 (543)
37 3pxi_A Negative regulator of g 99.6 1.8E-15 6.1E-20 156.3 14.0 210 36-317 491-720 (758)
38 2zan_A Vacuolar protein sortin 99.6 5.2E-15 1.8E-19 143.3 16.4 204 29-322 127-353 (444)
39 3syl_A Protein CBBX; photosynt 99.6 4.8E-16 1.6E-20 143.5 8.6 215 37-337 32-282 (309)
40 3u61_B DNA polymerase accessor 99.6 2.1E-15 7.1E-20 140.2 12.0 215 27-339 18-235 (324)
41 1r6b_X CLPA protein; AAA+, N-t 99.6 3.3E-15 1.1E-19 154.4 14.7 221 37-318 459-712 (758)
42 2r62_A Cell division protease 99.6 3.2E-17 1.1E-21 148.3 -0.4 222 30-347 5-259 (268)
43 1iqp_A RFCS; clamp loader, ext 99.6 6.7E-15 2.3E-19 136.5 14.6 230 25-346 15-251 (327)
44 1g41_A Heat shock protein HSLU 99.6 4.1E-15 1.4E-19 142.3 12.9 155 163-340 250-432 (444)
45 1ny5_A Transcriptional regulat 99.6 4.2E-15 1.4E-19 141.5 11.8 239 35-337 136-383 (387)
46 3cf0_A Transitional endoplasmi 99.6 9.5E-15 3.2E-19 134.5 13.6 156 30-248 9-196 (301)
47 2ce7_A Cell division protein F 99.6 1E-14 3.4E-19 141.5 14.3 217 30-344 10-259 (476)
48 1njg_A DNA polymerase III subu 99.6 2.4E-14 8.1E-19 126.4 13.5 230 30-339 17-249 (250)
49 3bos_A Putative DNA replicatio 99.6 6E-14 2E-18 124.1 14.5 213 27-339 19-241 (242)
50 1sxj_C Activator 1 40 kDa subu 99.5 2.3E-14 7.7E-19 134.2 12.1 216 31-339 20-237 (340)
51 2v1u_A Cell division control p 99.5 1.3E-13 4.6E-18 130.6 17.2 246 34-343 17-278 (387)
52 1sxj_E Activator 1 40 kDa subu 99.5 2.1E-13 7.1E-18 128.1 17.8 227 28-320 7-243 (354)
53 3dzd_A Transcriptional regulat 99.5 2E-14 6.8E-19 135.8 10.5 223 36-320 129-360 (368)
54 1qvr_A CLPB protein; coiled co 99.5 4.5E-14 1.6E-18 147.5 13.8 223 36-318 558-816 (854)
55 3pxg_A Negative regulator of g 99.5 1.2E-13 4.1E-18 134.7 14.9 220 34-339 178-404 (468)
56 1fnn_A CDC6P, cell division co 99.5 4E-13 1.4E-17 127.5 18.2 243 35-344 16-277 (389)
57 2x8a_A Nuclear valosin-contain 99.5 1.7E-13 5.8E-18 124.2 14.5 221 30-343 4-266 (274)
58 2dhr_A FTSH; AAA+ protein, hex 99.5 8.8E-14 3E-18 135.6 13.3 216 31-344 26-274 (499)
59 2chq_A Replication factor C sm 99.5 8.6E-14 3E-18 128.5 12.6 213 29-339 11-224 (319)
60 2z4s_A Chromosomal replication 99.5 7.5E-14 2.6E-18 135.0 12.6 134 163-342 194-333 (440)
61 1jr3_A DNA polymerase III subu 99.5 2.7E-13 9.1E-18 128.2 15.3 232 29-339 10-242 (373)
62 1ixz_A ATP-dependent metallopr 99.5 1.7E-13 5.7E-18 122.8 11.4 128 163-338 108-253 (254)
63 3cf2_A TER ATPase, transitiona 99.5 3E-14 1E-18 145.5 7.1 158 31-248 472-658 (806)
64 3hu3_A Transitional endoplasmi 99.5 1.8E-13 6.1E-18 133.6 12.3 215 33-344 201-462 (489)
65 1iy2_A ATP-dependent metallopr 99.5 5.8E-13 2E-17 121.0 13.7 97 205-338 177-277 (278)
66 1sxj_B Activator 1 37 kDa subu 99.5 9E-13 3.1E-17 121.9 14.8 211 32-339 17-229 (323)
67 3n70_A Transport activator; si 99.5 1.3E-13 4.6E-18 112.7 8.0 133 37-236 2-143 (145)
68 3co5_A Putative two-component 99.4 8.1E-14 2.8E-18 113.8 6.2 130 37-236 5-141 (143)
69 1r6b_X CLPA protein; AAA+, N-t 99.4 2.2E-12 7.7E-17 133.2 18.3 231 34-343 184-435 (758)
70 1l8q_A Chromosomal replication 99.4 4.6E-13 1.6E-17 124.4 11.1 134 163-343 98-242 (324)
71 2qby_B CDC6 homolog 3, cell di 99.4 6E-13 2.1E-17 126.2 11.0 132 166-342 136-271 (384)
72 3pxi_A Negative regulator of g 99.4 1.2E-12 4E-17 135.2 13.9 208 34-327 178-391 (758)
73 2qby_A CDC6 homolog 1, cell di 99.4 3.9E-12 1.3E-16 120.3 16.2 242 33-342 17-273 (386)
74 3cf2_A TER ATPase, transitiona 99.4 4.7E-13 1.6E-17 136.7 8.1 73 163-248 297-382 (806)
75 1sxj_A Activator 1 95 kDa subu 99.4 2.9E-12 9.9E-17 126.5 13.6 220 28-339 32-272 (516)
76 3te6_A Regulatory protein SIR3 99.3 1.8E-12 6.1E-17 119.2 8.5 142 163-342 132-316 (318)
77 1qvr_A CLPB protein; coiled co 99.3 5.2E-12 1.8E-16 131.9 12.9 213 34-325 168-396 (854)
78 3t15_A Ribulose bisphosphate c 99.3 2.7E-12 9.3E-17 117.5 7.3 83 162-248 98-195 (293)
79 1jbk_A CLPB protein; beta barr 99.3 6.9E-12 2.4E-16 106.4 7.0 50 33-82 19-68 (195)
80 2p65_A Hypothetical protein PF 99.2 5.5E-12 1.9E-16 106.6 6.1 49 34-82 20-68 (187)
81 1d2n_A N-ethylmaleimide-sensit 99.2 1.6E-11 5.4E-16 111.0 8.1 113 162-319 123-247 (272)
82 4akg_A Glutathione S-transfera 99.2 4.7E-10 1.6E-14 127.1 20.6 149 45-252 635-794 (2695)
83 1a5t_A Delta prime, HOLB; zinc 99.2 2.9E-10 1E-14 105.9 14.7 71 162-248 107-177 (334)
84 4akg_A Glutathione S-transfera 99.2 5.7E-10 2E-14 126.4 19.4 84 163-249 1336-1429(2695)
85 3fvq_A Fe(3+) IONS import ATP- 99.1 9.3E-12 3.2E-16 116.1 1.9 152 34-188 9-182 (359)
86 1vpl_A ABC transporter, ATP-bi 99.1 6.9E-12 2.4E-16 112.2 0.3 149 35-189 21-191 (256)
87 1ypw_A Transitional endoplasmi 99.1 9.1E-12 3.1E-16 128.9 0.5 159 31-249 472-659 (806)
88 2olj_A Amino acid ABC transpor 99.1 6.7E-12 2.3E-16 112.7 -0.6 153 34-189 29-204 (263)
89 1g6h_A High-affinity branched- 99.1 1.6E-11 5.3E-16 110.2 1.1 50 34-86 12-62 (257)
90 2yyz_A Sugar ABC transporter, 99.1 1.7E-11 6E-16 114.5 1.4 148 35-189 9-178 (359)
91 3vkg_A Dynein heavy chain, cyt 99.1 1.2E-09 4.1E-14 124.5 16.1 82 164-248 1375-1466(3245)
92 3rlf_A Maltose/maltodextrin im 99.1 9.5E-12 3.3E-16 116.8 -0.9 149 34-189 8-178 (381)
93 1z47_A CYSA, putative ABC-tran 99.1 1.5E-11 5.1E-16 114.7 -0.3 147 36-189 21-190 (355)
94 1ji0_A ABC transporter; ATP bi 99.1 2E-11 6.8E-16 108.3 0.4 149 36-189 13-184 (240)
95 2pcj_A ABC transporter, lipopr 99.1 7.5E-12 2.6E-16 109.9 -2.4 150 35-189 10-185 (224)
96 1b0u_A Histidine permease; ABC 99.0 1.2E-11 4E-16 111.2 -1.3 153 34-189 11-198 (262)
97 1v43_A Sugar-binding transport 99.0 4.4E-11 1.5E-15 112.3 2.2 149 34-189 16-186 (372)
98 2ihy_A ABC transporter, ATP-bi 99.0 2.5E-11 8.4E-16 110.0 0.3 50 34-86 26-76 (279)
99 1sgw_A Putative ABC transporte 99.0 1.1E-11 3.8E-16 107.8 -2.2 46 36-85 17-63 (214)
100 4g1u_C Hemin import ATP-bindin 99.0 1.5E-11 5.2E-16 110.7 -1.6 49 34-85 16-65 (266)
101 3d31_A Sulfate/molybdate ABC t 99.0 2.6E-11 8.8E-16 113.0 -0.1 145 37-189 9-172 (348)
102 2nq2_C Hypothetical ABC transp 99.0 1.9E-11 6.5E-16 109.2 -1.0 47 37-86 12-60 (253)
103 3gfo_A Cobalt import ATP-bindi 99.0 2E-11 6.9E-16 110.2 -1.4 49 34-85 12-62 (275)
104 2ff7_A Alpha-hemolysin translo 99.0 3.4E-11 1.2E-15 107.2 -0.4 142 42-189 22-190 (247)
105 2it1_A 362AA long hypothetical 99.0 2.2E-11 7.4E-16 114.0 -2.2 148 35-189 9-178 (362)
106 3tif_A Uncharacterized ABC tra 99.0 2.5E-10 8.4E-15 100.9 4.7 141 44-189 20-190 (235)
107 1oxx_K GLCV, glucose, ABC tran 99.0 1.8E-11 6E-16 114.5 -3.6 151 36-189 10-185 (353)
108 2onk_A Molybdate/tungstate ABC 99.0 2.8E-10 9.5E-15 100.8 4.3 38 45-85 15-52 (240)
109 2ixe_A Antigen peptide transpo 99.0 9.9E-11 3.4E-15 105.7 0.9 48 35-85 22-73 (271)
110 2gno_A DNA polymerase III, gam 98.9 1.5E-09 5.1E-14 99.6 8.3 69 163-249 82-150 (305)
111 2qi9_C Vitamin B12 import ATP- 98.9 4.7E-10 1.6E-14 99.8 4.6 142 44-189 15-178 (249)
112 1g29_1 MALK, maltose transport 98.9 3.2E-11 1.1E-15 113.5 -3.2 149 36-189 10-184 (372)
113 3tui_C Methionine import ATP-b 98.9 4.8E-10 1.7E-14 104.6 4.3 142 43-189 42-208 (366)
114 3ec2_A DNA replication protein 98.9 6.2E-09 2.1E-13 87.8 10.6 51 32-82 6-63 (180)
115 3gd7_A Fusion complex of cysti 98.9 1.4E-10 4.8E-15 109.6 0.3 148 34-189 24-200 (390)
116 1ypw_A Transitional endoplasmi 98.9 2.3E-09 7.9E-14 110.9 9.2 160 30-249 198-383 (806)
117 1mv5_A LMRA, multidrug resista 98.9 4.3E-11 1.5E-15 106.4 -3.5 41 42-85 15-56 (243)
118 2yz2_A Putative ABC transporte 98.9 1.1E-09 3.6E-14 98.7 5.5 39 44-85 22-61 (266)
119 2pjz_A Hypothetical protein ST 98.9 1.1E-10 3.7E-15 104.8 -1.3 38 43-85 19-57 (263)
120 1w5s_A Origin recognition comp 98.9 7E-09 2.4E-13 98.9 11.3 144 163-342 138-294 (412)
121 3nh6_A ATP-binding cassette SU 98.9 9.5E-11 3.3E-15 107.3 -2.2 142 42-189 67-235 (306)
122 2ghi_A Transport protein; mult 98.9 5.7E-10 2E-14 100.1 2.5 39 43-84 34-73 (260)
123 2d2e_A SUFC protein; ABC-ATPas 98.9 1.1E-10 3.8E-15 104.1 -2.4 46 37-85 11-59 (250)
124 2pze_A Cystic fibrosis transme 98.8 9.5E-10 3.2E-14 96.7 2.8 40 43-85 22-62 (229)
125 2cbz_A Multidrug resistance-as 98.8 9.5E-10 3.2E-14 97.2 2.6 40 43-85 19-59 (237)
126 3b5x_A Lipid A export ATP-bind 98.8 1.3E-09 4.4E-14 109.1 2.6 142 42-189 356-525 (582)
127 2kjq_A DNAA-related protein; s 98.8 4E-08 1.4E-12 80.3 9.9 57 163-230 83-141 (149)
128 2zu0_C Probable ATP-dependent 98.7 3.7E-10 1.3E-14 101.7 -2.8 45 34-81 25-70 (267)
129 2bbs_A Cystic fibrosis transme 98.7 1.7E-08 5.8E-13 91.7 6.8 39 44-85 53-92 (290)
130 3qf4_B Uncharacterized ABC tra 98.7 2.3E-09 7.8E-14 107.5 0.1 141 43-189 369-536 (598)
131 3b60_A Lipid A export ATP-bind 98.7 1.8E-09 6.1E-14 108.0 -0.7 142 42-189 356-525 (582)
132 3vkg_A Dynein heavy chain, cyt 98.7 1.5E-07 5E-12 107.8 13.7 89 164-254 657-756 (3245)
133 3qf4_A ABC transporter, ATP-bi 98.6 3.4E-09 1.2E-13 106.0 0.4 142 42-189 356-524 (587)
134 4a82_A Cystic fibrosis transme 98.6 6.3E-09 2.2E-13 103.9 2.0 41 43-86 355-396 (578)
135 2yl4_A ATP-binding cassette SU 98.6 9E-09 3.1E-13 103.2 3.0 140 44-189 359-528 (595)
136 1yqt_A RNAse L inhibitor; ATP- 98.5 4E-08 1.4E-12 97.0 4.4 30 56-85 310-340 (538)
137 1yqt_A RNAse L inhibitor; ATP- 98.5 5.5E-09 1.9E-13 103.2 -1.8 48 34-85 26-75 (538)
138 1tue_A Replication protein E1; 98.5 1.3E-07 4.6E-12 80.4 6.7 25 58-82 59-83 (212)
139 1ye8_A Protein THEP1, hypothet 98.5 9.8E-08 3.4E-12 80.4 5.8 29 161-189 97-128 (178)
140 3bk7_A ABC transporter ATP-bin 98.5 9.2E-09 3.1E-13 102.8 -1.1 47 35-85 97-145 (607)
141 3ozx_A RNAse L inhibitor; ATP 98.5 7.6E-08 2.6E-12 94.9 5.0 30 56-85 23-53 (538)
142 3bk7_A ABC transporter ATP-bin 98.5 3.4E-08 1.2E-12 98.7 2.6 30 56-85 380-410 (607)
143 3ozx_A RNAse L inhibitor; ATP 98.5 1.6E-07 5.5E-12 92.6 6.3 30 56-85 292-322 (538)
144 3j16_B RLI1P; ribosome recycli 98.3 7.3E-07 2.5E-11 89.0 7.1 30 56-85 101-131 (608)
145 3j16_B RLI1P; ribosome recycli 98.3 7.5E-07 2.6E-11 88.9 6.8 27 60-86 381-407 (608)
146 3g5u_A MCG1178, multidrug resi 98.3 1.9E-07 6.6E-12 101.2 1.8 41 43-86 404-445 (1284)
147 1jr3_D DNA polymerase III, del 98.3 1.3E-06 4.4E-11 81.3 7.2 130 162-342 75-210 (343)
148 2iw3_A Elongation factor 3A; a 98.2 2.8E-07 9.7E-12 95.9 2.3 42 35-79 441-483 (986)
149 2eyu_A Twitching motility prot 98.2 1.8E-06 6.2E-11 77.2 6.9 37 43-84 15-52 (261)
150 3g5u_A MCG1178, multidrug resi 98.2 7.5E-07 2.6E-11 96.6 5.2 140 44-189 1048-1216(1284)
151 4f4c_A Multidrug resistance pr 98.2 3.5E-07 1.2E-11 99.4 2.3 141 43-189 1093-1262(1321)
152 4f4c_A Multidrug resistance pr 98.2 4.2E-07 1.4E-11 98.8 2.2 41 43-86 432-473 (1321)
153 1u0j_A DNA replication protein 98.1 5.7E-06 1.9E-10 73.6 8.0 23 59-81 106-128 (267)
154 1htw_A HI0065; nucleotide-bind 98.1 1.9E-06 6.7E-11 70.8 4.3 43 38-84 16-59 (158)
155 4gp7_A Metallophosphoesterase; 98.1 3.7E-07 1.3E-11 76.3 -0.4 22 56-77 7-29 (171)
156 3jvv_A Twitching mobility prot 98.0 6.7E-06 2.3E-10 76.8 7.2 29 56-84 122-150 (356)
157 2qgz_A Helicase loader, putati 98.0 2.3E-06 8E-11 78.4 3.2 25 58-82 153-177 (308)
158 2i3b_A HCR-ntpase, human cance 98.0 1.8E-06 6.3E-11 73.2 2.2 23 60-82 4-26 (189)
159 2iw3_A Elongation factor 3A; a 97.9 2.1E-06 7.4E-11 89.3 1.9 41 43-86 687-728 (986)
160 3sop_A Neuronal-specific septi 97.8 1E-05 3.5E-10 72.7 4.3 26 60-85 5-30 (270)
161 3ux8_A Excinuclease ABC, A sub 97.8 2.5E-06 8.6E-11 86.6 0.3 29 43-74 32-61 (670)
162 2v9p_A Replication protein E1; 97.8 9.9E-06 3.4E-10 73.8 3.3 37 42-81 113-150 (305)
163 2jeo_A Uridine-cytidine kinase 97.7 1.4E-05 4.8E-10 70.6 3.0 41 39-82 9-50 (245)
164 2r2a_A Uncharacterized protein 97.7 3.7E-05 1.3E-09 65.6 5.4 63 162-237 86-153 (199)
165 3thx_B DNA mismatch repair pro 97.7 2E-05 6.8E-10 82.0 4.3 26 56-81 671-697 (918)
166 1z6g_A Guanylate kinase; struc 97.7 1.7E-05 5.8E-10 68.8 3.2 37 43-82 11-48 (218)
167 2ewv_A Twitching motility prot 97.6 7.9E-05 2.7E-09 70.0 6.7 29 56-84 134-163 (372)
168 3thx_A DNA mismatch repair pro 97.6 5.3E-05 1.8E-09 79.0 5.1 24 56-79 660-684 (934)
169 3tr0_A Guanylate kinase, GMP k 97.5 3.9E-05 1.3E-09 65.4 3.4 27 56-82 5-32 (205)
170 2qm8_A GTPase/ATPase; G protei 97.5 2.2E-05 7.7E-10 72.7 1.7 48 34-84 34-82 (337)
171 3vaa_A Shikimate kinase, SK; s 97.5 3.4E-05 1.2E-09 65.7 2.7 37 43-82 13-50 (199)
172 1tf7_A KAIC; homohexamer, hexa 97.5 1.6E-05 5.6E-10 78.3 0.6 44 37-83 20-67 (525)
173 3b85_A Phosphate starvation-in 97.5 2E-05 6.8E-10 67.9 1.0 39 39-85 10-49 (208)
174 3nwj_A ATSK2; P loop, shikimat 97.5 3.9E-05 1.3E-09 67.9 2.7 44 36-82 25-73 (250)
175 1znw_A Guanylate kinase, GMP k 97.5 5.1E-05 1.7E-09 65.1 3.3 27 56-82 18-45 (207)
176 2obl_A ESCN; ATPase, hydrolase 97.5 6.8E-05 2.3E-09 69.7 4.1 48 34-85 50-99 (347)
177 1kgd_A CASK, peripheral plasma 97.4 6.5E-05 2.2E-09 62.9 3.3 26 57-82 4-30 (180)
178 2dpy_A FLII, flagellum-specifi 97.4 0.0001 3.6E-09 70.6 5.1 48 34-85 136-185 (438)
179 1zp6_A Hypothetical protein AT 97.4 6.6E-05 2.3E-09 63.2 3.3 26 56-81 7-33 (191)
180 3c8u_A Fructokinase; YP_612366 97.4 0.00011 3.7E-09 63.1 4.6 28 56-83 20-48 (208)
181 2pt7_A CAG-ALFA; ATPase, prote 97.4 7.4E-05 2.5E-09 69.0 3.6 40 43-85 159-199 (330)
182 2gza_A Type IV secretion syste 97.4 4.8E-05 1.6E-09 71.2 2.4 37 46-85 166-203 (361)
183 2orw_A Thymidine kinase; TMTK, 97.4 0.00019 6.6E-09 60.4 5.5 27 163-189 76-102 (184)
184 3ux8_A Excinuclease ABC, A sub 97.4 8E-05 2.7E-09 75.6 3.4 33 43-78 336-369 (670)
185 2w58_A DNAI, primosome compone 97.4 0.00014 4.8E-09 61.8 4.5 51 32-82 21-79 (202)
186 1kag_A SKI, shikimate kinase I 97.3 9.1E-05 3.1E-09 61.3 2.9 23 60-82 7-29 (173)
187 3szr_A Interferon-induced GTP- 97.3 0.0001 3.4E-09 73.9 3.7 25 59-83 47-71 (608)
188 3uie_A Adenylyl-sulfate kinase 97.3 0.00011 3.7E-09 62.6 3.3 27 56-82 23-50 (200)
189 3lnc_A Guanylate kinase, GMP k 97.3 6.3E-05 2.1E-09 65.6 1.7 35 45-82 17-53 (231)
190 1lvg_A Guanylate kinase, GMP k 97.3 9.3E-05 3.2E-09 63.0 2.6 26 57-82 3-29 (198)
191 1s96_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 63.6 3.2 28 56-83 14-42 (219)
192 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.6E-09 61.9 2.8 25 60-84 4-28 (186)
193 3upu_A ATP-dependent DNA helic 97.3 0.00033 1.1E-08 67.7 6.5 48 34-82 22-70 (459)
194 2oap_1 GSPE-2, type II secreti 97.3 0.00018 6.1E-09 70.4 4.5 41 42-85 247-288 (511)
195 4eun_A Thermoresistant glucoki 97.2 0.00012 4.1E-09 62.3 2.7 25 57-81 28-53 (200)
196 3tau_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 61.8 3.6 28 56-83 6-34 (208)
197 2j41_A Guanylate kinase; GMP, 97.2 0.00018 6E-09 61.3 3.4 28 56-83 4-32 (207)
198 3asz_A Uridine kinase; cytidin 97.2 0.00015 5E-09 62.2 2.8 26 57-82 5-31 (211)
199 1knq_A Gluconate kinase; ALFA/ 97.2 0.0002 6.8E-09 59.4 3.2 25 57-81 7-32 (175)
200 1wb9_A DNA mismatch repair pro 97.2 0.00029 1E-08 72.5 5.0 25 57-81 606-631 (800)
201 1svm_A Large T antigen; AAA+ f 97.1 0.00032 1.1E-08 65.8 4.6 36 44-82 158-194 (377)
202 1qhx_A CPT, protein (chloramph 97.1 0.00021 7.2E-09 59.3 3.0 23 60-82 6-28 (178)
203 4a74_A DNA repair and recombin 97.1 0.00023 8E-09 61.5 3.2 27 56-82 23-50 (231)
204 3kb2_A SPBC2 prophage-derived 97.1 0.0002 7E-09 58.9 2.6 23 60-82 4-26 (173)
205 3aez_A Pantothenate kinase; tr 97.1 0.00022 7.5E-09 65.3 2.9 28 56-83 88-116 (312)
206 3e1s_A Exodeoxyribonuclease V, 97.1 0.00049 1.7E-08 68.3 5.6 36 44-82 194-229 (574)
207 1ewq_A DNA mismatch repair pro 97.1 0.00026 9E-09 72.4 3.6 24 58-81 576-600 (765)
208 2npi_A Protein CLP1; CLP1-PCF1 97.1 0.00031 1E-08 67.8 3.9 36 47-85 130-166 (460)
209 2o8b_B DNA mismatch repair pro 97.1 0.00057 1.9E-08 72.2 6.2 24 58-82 789-813 (1022)
210 2bdt_A BH3686; alpha-beta prot 97.1 0.00026 8.8E-09 59.5 2.9 22 60-81 5-26 (189)
211 1cr0_A DNA primase/helicase; R 97.0 0.00031 1.1E-08 63.6 3.4 38 44-84 24-62 (296)
212 3b9q_A Chloroplast SRP recepto 97.0 0.00018 6.3E-09 65.5 1.9 30 56-85 98-128 (302)
213 2qor_A Guanylate kinase; phosp 97.0 0.00034 1.2E-08 59.6 3.3 27 56-82 10-37 (204)
214 2qen_A Walker-type ATPase; unk 97.0 0.00048 1.7E-08 63.4 4.6 49 31-81 7-55 (350)
215 1tq4_A IIGP1, interferon-induc 97.0 0.00038 1.3E-08 66.0 3.7 27 59-85 71-97 (413)
216 2ehv_A Hypothetical protein PH 97.0 0.00033 1.1E-08 61.4 3.1 23 56-78 28-51 (251)
217 3tqc_A Pantothenate kinase; bi 97.0 0.00027 9.3E-09 64.7 2.6 45 38-82 69-117 (321)
218 2bbw_A Adenylate kinase 4, AK4 97.0 0.00034 1.2E-08 61.5 3.0 23 60-82 30-55 (246)
219 3ney_A 55 kDa erythrocyte memb 97.0 0.00043 1.5E-08 58.7 3.5 26 57-82 18-44 (197)
220 2qag_B Septin-6, protein NEDD5 96.9 0.00041 1.4E-08 65.9 3.5 39 39-81 25-66 (427)
221 1via_A Shikimate kinase; struc 96.9 0.00033 1.1E-08 58.1 2.6 24 59-82 6-29 (175)
222 1p9r_A General secretion pathw 96.9 0.00049 1.7E-08 65.5 3.9 29 56-84 165-194 (418)
223 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00039 1.3E-08 60.1 3.1 37 44-83 11-49 (235)
224 1ly1_A Polynucleotide kinase; 96.9 0.00039 1.3E-08 57.6 2.9 20 60-79 5-24 (181)
225 3trf_A Shikimate kinase, SK; a 96.9 0.00036 1.2E-08 58.3 2.6 24 59-82 7-30 (185)
226 3t61_A Gluconokinase; PSI-biol 96.9 0.00034 1.2E-08 59.5 2.5 23 60-82 21-43 (202)
227 1lw7_A Transcriptional regulat 96.9 0.00033 1.1E-08 65.5 2.5 28 58-85 170-198 (365)
228 1rj9_A FTSY, signal recognitio 96.9 0.00039 1.3E-08 63.3 2.9 28 58-85 102-130 (304)
229 1cke_A CK, MSSA, protein (cyti 96.9 0.00037 1.3E-08 60.3 2.5 24 59-82 7-30 (227)
230 2fna_A Conserved hypothetical 96.9 0.0012 4E-08 60.9 6.0 48 31-82 8-55 (357)
231 3kta_A Chromosome segregation 96.9 0.00058 2E-08 56.9 3.4 28 56-83 25-52 (182)
232 1gvn_B Zeta; postsegregational 96.8 0.00099 3.4E-08 60.1 4.9 23 60-82 36-58 (287)
233 2og2_A Putative signal recogni 96.8 0.00041 1.4E-08 64.6 2.4 30 56-85 155-185 (359)
234 3cm0_A Adenylate kinase; ATP-b 96.8 0.00048 1.6E-08 57.5 2.6 22 60-81 7-28 (186)
235 3e70_C DPA, signal recognition 96.8 0.00046 1.6E-08 63.5 2.5 29 57-85 128-157 (328)
236 2p5t_B PEZT; postsegregational 96.8 0.00083 2.8E-08 59.4 4.1 23 60-82 35-57 (253)
237 2yhs_A FTSY, cell division pro 96.8 0.00043 1.5E-08 66.8 2.4 29 56-84 291-320 (503)
238 3lw7_A Adenylate kinase relate 96.8 0.00053 1.8E-08 56.3 2.7 21 60-81 4-24 (179)
239 1y63_A LMAJ004144AAA protein; 96.8 0.00073 2.5E-08 56.6 3.5 21 60-80 13-33 (184)
240 1sq5_A Pantothenate kinase; P- 96.8 0.00057 2E-08 62.4 3.1 27 56-82 78-105 (308)
241 1jjv_A Dephospho-COA kinase; P 96.8 0.00058 2E-08 58.2 2.9 20 60-79 5-24 (206)
242 1nks_A Adenylate kinase; therm 96.8 0.00048 1.6E-08 57.7 2.4 23 60-82 4-26 (194)
243 1kht_A Adenylate kinase; phosp 96.8 0.00052 1.8E-08 57.4 2.5 23 60-82 6-28 (192)
244 1rz3_A Hypothetical protein rb 96.8 0.0011 3.6E-08 56.4 4.4 27 56-82 20-47 (201)
245 2qt1_A Nicotinamide riboside k 96.8 0.00082 2.8E-08 57.3 3.7 27 56-82 19-46 (207)
246 2ze6_A Isopentenyl transferase 96.8 0.00055 1.9E-08 60.6 2.6 23 60-82 4-26 (253)
247 2iyv_A Shikimate kinase, SK; t 96.8 0.00058 2E-08 57.0 2.6 23 60-82 5-27 (184)
248 4e22_A Cytidylate kinase; P-lo 96.7 0.00075 2.6E-08 59.7 3.4 25 57-81 26-51 (252)
249 2rhm_A Putative kinase; P-loop 96.7 0.00056 1.9E-08 57.4 2.4 22 60-81 8-29 (193)
250 2if2_A Dephospho-COA kinase; a 96.7 0.00064 2.2E-08 57.7 2.8 21 60-81 4-24 (204)
251 3iij_A Coilin-interacting nucl 96.7 0.00063 2.2E-08 56.6 2.6 24 59-82 13-36 (180)
252 2pez_A Bifunctional 3'-phospho 96.7 0.0007 2.4E-08 56.3 2.8 26 57-82 4-30 (179)
253 3dl0_A Adenylate kinase; phosp 96.7 0.00074 2.5E-08 58.0 3.0 23 60-82 3-25 (216)
254 2cvh_A DNA repair and recombin 96.7 0.0011 3.9E-08 56.7 4.2 24 56-79 18-42 (220)
255 2jaq_A Deoxyguanosine kinase; 96.7 0.00065 2.2E-08 57.5 2.6 23 60-82 3-25 (205)
256 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0011 3.8E-08 61.2 4.3 36 44-82 11-49 (359)
257 1e6c_A Shikimate kinase; phosp 96.7 0.00069 2.4E-08 55.8 2.6 23 60-82 5-27 (173)
258 2vli_A Antibiotic resistance p 96.7 0.00065 2.2E-08 56.5 2.3 23 60-82 8-30 (183)
259 3euj_A Chromosome partition pr 96.7 0.00049 1.7E-08 66.5 1.7 38 45-85 20-57 (483)
260 2yvu_A Probable adenylyl-sulfa 96.7 0.00091 3.1E-08 55.9 3.2 26 57-82 12-38 (186)
261 3fb4_A Adenylate kinase; psych 96.7 0.00074 2.5E-08 57.9 2.6 23 60-82 3-25 (216)
262 1zuh_A Shikimate kinase; alpha 96.7 0.00077 2.6E-08 55.4 2.6 24 59-82 9-32 (168)
263 1tev_A UMP-CMP kinase; ploop, 96.7 0.00075 2.6E-08 56.6 2.6 23 60-82 6-28 (196)
264 3sr0_A Adenylate kinase; phosp 96.6 0.00076 2.6E-08 57.7 2.6 23 60-82 3-25 (206)
265 2c95_A Adenylate kinase 1; tra 96.6 0.00075 2.6E-08 56.7 2.5 23 60-82 12-34 (196)
266 2cdn_A Adenylate kinase; phosp 96.6 0.0008 2.7E-08 57.1 2.6 23 60-82 23-45 (201)
267 2bwj_A Adenylate kinase 5; pho 96.6 0.00079 2.7E-08 56.8 2.5 23 60-82 15-37 (199)
268 2plr_A DTMP kinase, probable t 96.6 0.00085 2.9E-08 57.1 2.6 23 60-82 7-29 (213)
269 1zd8_A GTP:AMP phosphotransfer 96.6 0.00097 3.3E-08 57.8 2.9 23 60-82 10-32 (227)
270 1zak_A Adenylate kinase; ATP:A 96.6 0.00087 3E-08 57.8 2.5 23 60-82 8-30 (222)
271 2pt5_A Shikimate kinase, SK; a 96.6 0.00095 3.3E-08 54.7 2.6 23 60-82 3-25 (168)
272 1qf9_A UMP/CMP kinase, protein 96.6 0.00093 3.2E-08 55.9 2.5 23 60-82 9-31 (194)
273 3umf_A Adenylate kinase; rossm 96.6 0.00096 3.3E-08 57.5 2.6 23 60-82 32-54 (217)
274 1aky_A Adenylate kinase; ATP:A 96.5 0.00095 3.3E-08 57.5 2.6 23 60-82 7-29 (220)
275 1ex7_A Guanylate kinase; subst 96.5 0.0011 3.9E-08 55.6 3.0 23 60-82 4-26 (186)
276 1ukz_A Uridylate kinase; trans 96.5 0.0013 4.3E-08 55.8 3.0 23 60-82 18-40 (203)
277 2vp4_A Deoxynucleoside kinase; 96.5 0.0012 4E-08 57.5 2.9 25 56-80 18-43 (230)
278 2v54_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 55.7 3.0 22 60-81 7-28 (204)
279 2z0h_A DTMP kinase, thymidylat 96.5 0.0011 3.8E-08 55.7 2.5 23 60-82 3-25 (197)
280 1m7g_A Adenylylsulfate kinase; 96.5 0.0014 4.8E-08 56.1 3.2 27 56-82 23-50 (211)
281 1pzn_A RAD51, DNA repair and r 96.5 0.0018 6E-08 60.2 3.9 26 56-81 129-155 (349)
282 1n0w_A DNA repair protein RAD5 96.4 0.0018 6E-08 56.4 3.7 25 56-80 22-47 (243)
283 2b8t_A Thymidine kinase; deoxy 96.4 0.0012 4.2E-08 57.1 2.5 25 57-81 11-36 (223)
284 2rcn_A Probable GTPase ENGC; Y 96.4 0.0023 7.7E-08 59.4 4.5 34 45-82 206-240 (358)
285 2pbr_A DTMP kinase, thymidylat 96.4 0.0012 4.2E-08 55.2 2.5 22 60-81 3-24 (195)
286 2wwf_A Thymidilate kinase, put 96.4 0.0012 4.1E-08 56.3 2.4 23 60-82 13-35 (212)
287 4eaq_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 56.4 3.3 28 56-83 24-52 (229)
288 1e4v_A Adenylate kinase; trans 96.4 0.0013 4.5E-08 56.3 2.4 23 60-82 3-25 (214)
289 3be4_A Adenylate kinase; malar 96.4 0.0014 4.6E-08 56.5 2.4 23 60-82 8-30 (217)
290 2qnr_A Septin-2, protein NEDD5 96.4 0.0011 3.9E-08 60.2 1.9 24 60-83 21-45 (301)
291 1u0l_A Probable GTPase ENGC; p 96.4 0.0026 8.8E-08 57.8 4.3 27 58-84 169-196 (301)
292 3r20_A Cytidylate kinase; stru 96.3 0.0015 5.1E-08 57.0 2.6 23 60-82 12-34 (233)
293 2xb4_A Adenylate kinase; ATP-b 96.3 0.0014 4.9E-08 56.6 2.5 23 60-82 3-25 (223)
294 3tlx_A Adenylate kinase 2; str 96.3 0.0015 5.1E-08 57.4 2.6 23 60-82 32-54 (243)
295 1nn5_A Similar to deoxythymidy 96.3 0.0015 5E-08 55.8 2.4 23 60-82 12-34 (215)
296 1ak2_A Adenylate kinase isoenz 96.3 0.0015 5.3E-08 56.8 2.6 23 60-82 19-41 (233)
297 1qhl_A Protein (cell division 96.3 0.00039 1.3E-08 60.5 -1.3 26 60-85 30-55 (227)
298 1odf_A YGR205W, hypothetical 3 96.3 0.0019 6.6E-08 58.3 3.2 24 60-83 34-57 (290)
299 2f1r_A Molybdopterin-guanine d 96.3 0.00078 2.7E-08 55.9 0.5 25 60-84 5-29 (171)
300 1oix_A RAS-related protein RAB 96.3 0.0018 6.3E-08 54.3 2.8 23 60-82 32-54 (191)
301 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0018 6.2E-08 57.4 2.9 22 60-81 7-28 (260)
302 2f9l_A RAB11B, member RAS onco 96.3 0.002 7E-08 54.3 2.9 22 60-81 8-29 (199)
303 1nlf_A Regulatory protein REPA 96.2 0.0021 7E-08 57.6 3.0 27 56-82 28-55 (279)
304 1q3t_A Cytidylate kinase; nucl 96.2 0.0021 7.2E-08 56.0 3.0 27 56-82 14-41 (236)
305 1uf9_A TT1252 protein; P-loop, 96.2 0.0021 7.1E-08 54.3 2.8 21 60-80 11-31 (203)
306 3ake_A Cytidylate kinase; CMP 96.2 0.002 6.8E-08 54.6 2.6 24 59-82 4-27 (208)
307 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0027 9.1E-08 51.3 3.1 26 56-81 22-47 (149)
308 1uj2_A Uridine-cytidine kinase 96.1 0.0025 8.4E-08 56.2 3.0 23 60-82 25-47 (252)
309 1gtv_A TMK, thymidylate kinase 96.1 0.001 3.5E-08 56.8 0.3 24 60-83 3-26 (214)
310 2p67_A LAO/AO transport system 96.1 0.0032 1.1E-07 58.2 3.6 40 40-82 41-81 (341)
311 2fz4_A DNA repair protein RAD2 96.1 0.0069 2.4E-07 52.8 5.6 26 56-81 107-132 (237)
312 3cr8_A Sulfate adenylyltranfer 96.1 0.0027 9.1E-08 62.6 3.2 28 56-83 367-395 (552)
313 2yv5_A YJEQ protein; hydrolase 96.1 0.0047 1.6E-07 56.0 4.6 27 57-84 164-191 (302)
314 3crm_A TRNA delta(2)-isopenten 96.1 0.0028 9.6E-08 57.9 3.0 23 60-82 8-30 (323)
315 1vht_A Dephospho-COA kinase; s 96.0 0.0029 9.9E-08 54.3 2.9 20 60-79 7-26 (218)
316 1pui_A ENGB, probable GTP-bind 96.0 0.0018 6.1E-08 55.0 1.4 26 56-81 24-50 (210)
317 1g5t_A COB(I)alamin adenosyltr 96.0 0.0083 2.9E-07 50.5 5.3 55 162-236 119-179 (196)
318 2grj_A Dephospho-COA kinase; T 96.0 0.0034 1.2E-07 53.0 2.9 22 60-81 15-36 (192)
319 1vma_A Cell division protein F 96.0 0.0036 1.2E-07 56.9 3.3 28 57-84 103-131 (306)
320 1ltq_A Polynucleotide kinase; 96.0 0.0032 1.1E-07 56.8 2.9 22 60-81 5-26 (301)
321 1z6t_A APAF-1, apoptotic prote 95.9 0.0077 2.6E-07 59.8 5.8 47 34-80 122-170 (591)
322 2px0_A Flagellar biosynthesis 95.9 0.0032 1.1E-07 57.0 2.8 27 57-83 104-131 (296)
323 2wji_A Ferrous iron transport 95.9 0.0038 1.3E-07 50.8 2.8 23 59-81 5-27 (165)
324 2qmh_A HPR kinase/phosphorylas 95.9 0.0047 1.6E-07 52.2 3.2 23 60-82 37-59 (205)
325 1t9h_A YLOQ, probable GTPase E 95.9 0.0015 5E-08 59.5 0.1 28 57-84 172-200 (307)
326 2dr3_A UPF0273 protein PH0284; 95.8 0.0041 1.4E-07 54.1 3.0 26 56-81 21-47 (247)
327 2zej_A Dardarin, leucine-rich 95.8 0.0038 1.3E-07 51.8 2.6 21 60-80 5-25 (184)
328 1f6b_A SAR1; gtpases, N-termin 95.8 0.0042 1.4E-07 52.4 2.8 34 43-79 14-47 (198)
329 3a8t_A Adenylate isopentenyltr 95.8 0.0045 1.6E-07 56.8 3.2 23 60-82 43-65 (339)
330 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0042 1.4E-07 56.6 2.9 24 57-80 122-146 (331)
331 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0038 1.3E-07 58.3 2.7 27 56-82 22-48 (365)
332 3d3q_A TRNA delta(2)-isopenten 95.7 0.0048 1.6E-07 56.7 3.0 23 60-82 10-32 (340)
333 1np6_A Molybdopterin-guanine d 95.7 0.0045 1.5E-07 51.4 2.5 23 60-82 9-31 (174)
334 1w1w_A Structural maintenance 95.7 0.0057 1.9E-07 58.4 3.4 29 56-84 24-53 (430)
335 3qks_A DNA double-strand break 95.6 0.0051 1.7E-07 52.3 2.7 27 56-82 22-48 (203)
336 1m2o_B GTP-binding protein SAR 95.6 0.0061 2.1E-07 50.9 3.1 25 56-80 22-46 (190)
337 3vkw_A Replicase large subunit 95.6 0.011 3.6E-07 56.4 5.0 26 164-189 235-260 (446)
338 2f6r_A COA synthase, bifunctio 95.6 0.0053 1.8E-07 55.1 2.7 20 60-79 78-97 (281)
339 2wjg_A FEOB, ferrous iron tran 95.6 0.0061 2.1E-07 50.5 2.9 21 60-80 10-30 (188)
340 4aby_A DNA repair protein RECN 95.6 0.0017 5.9E-08 61.6 -0.7 28 56-83 59-86 (415)
341 2gj8_A MNME, tRNA modification 95.5 0.0064 2.2E-07 49.9 2.8 22 60-81 7-28 (172)
342 2qag_C Septin-7; cell cycle, c 95.5 0.0058 2E-07 58.0 2.8 23 60-82 34-56 (418)
343 3hr8_A Protein RECA; alpha and 95.5 0.0058 2E-07 56.7 2.8 28 56-83 59-87 (356)
344 1tf7_A KAIC; homohexamer, hexa 95.5 0.0073 2.5E-07 59.2 3.6 28 56-83 279-307 (525)
345 3exa_A TRNA delta(2)-isopenten 95.5 0.0068 2.3E-07 55.0 3.1 23 60-82 6-28 (322)
346 1xx6_A Thymidine kinase; NESG, 95.5 0.0082 2.8E-07 50.5 3.4 26 164-189 82-107 (191)
347 3zvl_A Bifunctional polynucleo 95.5 0.0061 2.1E-07 58.0 2.9 23 60-82 261-283 (416)
348 1xjc_A MOBB protein homolog; s 95.5 0.0063 2.1E-07 50.2 2.5 23 60-82 7-29 (169)
349 2h92_A Cytidylate kinase; ross 95.5 0.0071 2.4E-07 51.8 3.0 23 60-82 6-28 (219)
350 3foz_A TRNA delta(2)-isopenten 95.4 0.007 2.4E-07 54.8 3.0 23 60-82 13-35 (316)
351 1zu4_A FTSY; GTPase, signal re 95.4 0.0059 2E-07 55.9 2.5 28 57-84 104-132 (320)
352 1e69_A Chromosome segregation 95.4 0.0081 2.8E-07 55.0 3.3 27 163-189 241-268 (322)
353 1nij_A Hypothetical protein YJ 95.4 0.0066 2.3E-07 55.5 2.6 22 60-81 7-28 (318)
354 3lda_A DNA repair protein RAD5 95.4 0.0074 2.5E-07 57.0 3.0 23 56-78 176-199 (400)
355 4b3f_X DNA-binding protein smu 95.4 0.0085 2.9E-07 60.4 3.6 37 42-81 192-230 (646)
356 1a7j_A Phosphoribulokinase; tr 95.4 0.0045 1.5E-07 55.9 1.4 23 60-82 8-30 (290)
357 3qkt_A DNA double-strand break 95.3 0.008 2.7E-07 55.5 3.0 27 163-189 272-299 (339)
358 2dyk_A GTP-binding protein; GT 95.3 0.0085 2.9E-07 48.0 2.9 23 59-81 3-25 (161)
359 3tqf_A HPR(Ser) kinase; transf 95.3 0.0098 3.4E-07 49.0 3.1 21 59-79 18-38 (181)
360 2o5v_A DNA replication and rep 95.3 0.008 2.8E-07 55.9 2.9 27 56-82 25-51 (359)
361 1z2a_A RAS-related protein RAB 95.3 0.0091 3.1E-07 48.2 2.9 22 60-81 8-29 (168)
362 2nzj_A GTP-binding protein REM 95.3 0.0088 3E-07 48.7 2.8 22 60-81 7-28 (175)
363 2ged_A SR-beta, signal recogni 95.2 0.0095 3.3E-07 49.5 2.9 22 60-81 51-72 (193)
364 1kao_A RAP2A; GTP-binding prot 95.2 0.01 3.5E-07 47.7 2.9 23 59-81 5-27 (167)
365 3ice_A Transcription terminati 95.2 0.0097 3.3E-07 55.5 3.0 27 56-82 172-199 (422)
366 3q72_A GTP-binding protein RAD 95.2 0.0083 2.8E-07 48.4 2.3 22 60-81 5-26 (166)
367 2ce2_X GTPase HRAS; signaling 95.1 0.01 3.5E-07 47.6 2.8 23 59-81 5-27 (166)
368 4edh_A DTMP kinase, thymidylat 95.1 0.01 3.4E-07 51.0 2.9 26 58-83 6-32 (213)
369 3gmt_A Adenylate kinase; ssgci 95.1 0.009 3.1E-07 51.8 2.6 23 60-82 11-33 (230)
370 3q85_A GTP-binding protein REM 95.1 0.01 3.5E-07 48.0 2.8 22 60-81 5-26 (169)
371 2www_A Methylmalonic aciduria 95.1 0.0099 3.4E-07 55.1 2.9 24 60-83 77-100 (349)
372 2erx_A GTP-binding protein DI- 95.1 0.011 3.8E-07 47.8 2.9 21 60-80 6-26 (172)
373 2j9r_A Thymidine kinase; TK1, 95.1 0.024 8.3E-07 48.4 5.0 26 164-189 102-127 (214)
374 1u8z_A RAS-related protein RAL 95.1 0.011 3.9E-07 47.5 2.9 23 59-81 6-28 (168)
375 1z0j_A RAB-22, RAS-related pro 95.1 0.011 3.8E-07 47.7 2.9 22 60-81 9-30 (170)
376 1p5z_B DCK, deoxycytidine kina 95.1 0.0072 2.5E-07 53.5 1.8 23 60-82 27-49 (263)
377 1ek0_A Protein (GTP-binding pr 95.1 0.012 4E-07 47.6 2.9 23 59-81 5-27 (170)
378 1g16_A RAS-related protein SEC 95.0 0.011 3.8E-07 47.7 2.8 22 60-81 6-27 (170)
379 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.012 4E-07 48.1 2.9 22 60-81 10-31 (177)
380 1z08_A RAS-related protein RAB 95.0 0.012 4.1E-07 47.6 2.9 22 60-81 9-30 (170)
381 3k53_A Ferrous iron transport 95.0 0.011 3.7E-07 52.6 2.8 24 59-82 5-28 (271)
382 2ocp_A DGK, deoxyguanosine kin 95.0 0.013 4.3E-07 51.1 3.1 23 60-82 5-27 (241)
383 3v9p_A DTMP kinase, thymidylat 95.0 0.0094 3.2E-07 51.7 2.2 27 57-83 24-51 (227)
384 1ky3_A GTP-binding protein YPT 95.0 0.012 4.2E-07 48.0 2.9 22 60-81 11-32 (182)
385 3e2i_A Thymidine kinase; Zn-bi 95.0 0.025 8.6E-07 48.3 4.8 28 163-190 101-128 (219)
386 1c1y_A RAS-related protein RAP 95.0 0.013 4.4E-07 47.2 2.9 22 59-80 5-26 (167)
387 1nrj_B SR-beta, signal recogni 95.0 0.012 4.2E-07 50.0 2.9 23 59-81 14-36 (218)
388 2zr9_A Protein RECA, recombina 94.9 0.012 4.1E-07 54.5 3.0 26 56-81 59-85 (349)
389 3lxx_A GTPase IMAP family memb 94.9 0.012 4.2E-07 51.1 2.9 23 60-82 32-54 (239)
390 1ega_A Protein (GTP-binding pr 94.9 0.011 3.6E-07 53.7 2.5 26 56-81 7-32 (301)
391 1r2q_A RAS-related protein RAB 94.9 0.013 4.6E-07 47.2 2.9 21 60-80 9-29 (170)
392 2lkc_A Translation initiation 94.9 0.013 4.6E-07 47.7 2.9 23 59-81 10-32 (178)
393 2hxs_A RAB-26, RAS-related pro 94.9 0.014 4.8E-07 47.6 3.0 22 60-81 9-30 (178)
394 1ls1_A Signal recognition part 94.9 0.013 4.4E-07 53.0 2.9 28 57-84 97-125 (295)
395 1r8s_A ADP-ribosylation factor 94.8 0.014 4.9E-07 46.9 2.9 21 60-80 3-23 (164)
396 1svi_A GTP-binding protein YSX 94.8 0.013 4.5E-07 48.7 2.8 22 59-80 25-46 (195)
397 3tw8_B RAS-related protein RAB 94.8 0.012 4E-07 48.2 2.4 22 60-81 12-33 (181)
398 2r6a_A DNAB helicase, replicat 94.8 0.019 6.7E-07 55.1 4.3 27 56-82 201-228 (454)
399 2cxx_A Probable GTP-binding pr 94.8 0.013 4.5E-07 48.4 2.7 23 59-81 3-25 (190)
400 3bc1_A RAS-related protein RAB 94.8 0.015 5E-07 48.1 2.9 22 60-81 14-35 (195)
401 3bh0_A DNAB-like replicative h 94.8 0.022 7.4E-07 51.9 4.3 34 45-81 58-92 (315)
402 3tmk_A Thymidylate kinase; pho 94.8 0.014 4.9E-07 50.1 2.8 27 57-83 4-31 (216)
403 3t1o_A Gliding protein MGLA; G 94.8 0.017 5.9E-07 47.9 3.3 23 60-82 17-39 (198)
404 2oil_A CATX-8, RAS-related pro 94.8 0.015 5.1E-07 48.4 2.9 22 60-81 28-49 (193)
405 2fn4_A P23, RAS-related protei 94.8 0.015 5E-07 47.6 2.8 22 60-81 12-33 (181)
406 1fzq_A ADP-ribosylation factor 94.8 0.012 4.2E-07 48.6 2.3 21 60-80 19-39 (181)
407 1upt_A ARL1, ADP-ribosylation 94.8 0.015 5.3E-07 47.0 2.9 22 59-80 9-30 (171)
408 4dsu_A GTPase KRAS, isoform 2B 94.7 0.015 5.2E-07 47.9 2.9 22 60-81 7-28 (189)
409 3pqc_A Probable GTP-binding pr 94.7 0.015 5E-07 48.3 2.8 23 59-81 25-47 (195)
410 2y8e_A RAB-protein 6, GH09086P 94.7 0.015 5.2E-07 47.3 2.8 21 60-80 17-37 (179)
411 1z0f_A RAB14, member RAS oncog 94.7 0.016 5.4E-07 47.2 2.9 22 60-81 18-39 (179)
412 1m7b_A RND3/RHOE small GTP-bin 94.7 0.015 5.2E-07 48.0 2.8 22 60-81 10-31 (184)
413 3lv8_A DTMP kinase, thymidylat 94.7 0.014 4.8E-07 50.8 2.7 24 60-83 30-53 (236)
414 1udx_A The GTP-binding protein 94.7 0.0076 2.6E-07 57.2 1.0 34 46-82 148-182 (416)
415 1v5w_A DMC1, meiotic recombina 94.7 0.024 8.3E-07 52.3 4.3 25 56-80 120-145 (343)
416 3clv_A RAB5 protein, putative; 94.7 0.016 5.6E-07 48.2 2.9 22 60-81 10-31 (208)
417 3con_A GTPase NRAS; structural 94.6 0.017 5.7E-07 47.9 2.9 22 60-81 24-45 (190)
418 2zts_A Putative uncharacterize 94.6 0.017 5.9E-07 50.1 3.1 24 56-79 28-52 (251)
419 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.019 6.4E-07 54.0 3.4 25 56-80 18-43 (392)
420 2efe_B Small GTP-binding prote 94.6 0.017 5.9E-07 47.2 2.9 22 60-81 15-36 (181)
421 2bme_A RAB4A, RAS-related prot 94.6 0.017 5.8E-07 47.5 2.8 22 60-81 13-34 (186)
422 2a9k_A RAS-related protein RAL 94.6 0.018 6.1E-07 47.3 2.9 22 60-81 21-42 (187)
423 2g6b_A RAS-related protein RAB 94.6 0.018 6.1E-07 47.1 2.9 22 60-81 13-34 (180)
424 1c9k_A COBU, adenosylcobinamid 94.6 0.017 5.9E-07 48.0 2.8 21 60-80 2-22 (180)
425 3ihw_A Centg3; RAS, centaurin, 94.6 0.018 6.1E-07 47.8 2.9 21 60-80 23-43 (184)
426 3ld9_A DTMP kinase, thymidylat 94.6 0.018 6.3E-07 49.6 3.0 27 57-83 20-47 (223)
427 4tmk_A Protein (thymidylate ki 94.5 0.016 5.6E-07 49.6 2.6 23 60-82 6-28 (213)
428 3eph_A TRNA isopentenyltransfe 94.5 0.014 4.9E-07 54.7 2.4 24 60-83 5-28 (409)
429 3auy_A DNA double-strand break 94.5 0.017 5.8E-07 53.9 2.9 27 55-81 23-49 (371)
430 2gf9_A RAS-related protein RAB 94.5 0.019 6.5E-07 47.6 2.9 22 60-81 25-46 (189)
431 3kkq_A RAS-related protein M-R 94.5 0.019 6.5E-07 47.1 2.9 22 60-81 21-42 (183)
432 1moz_A ARL1, ADP-ribosylation 94.5 0.012 4.2E-07 48.3 1.7 20 60-79 21-40 (183)
433 3iev_A GTP-binding protein ERA 94.5 0.016 5.5E-07 52.6 2.6 26 56-81 9-34 (308)
434 1w36_D RECD, exodeoxyribonucle 94.5 0.022 7.7E-07 56.8 3.8 26 56-81 163-188 (608)
435 3b1v_A Ferrous iron uptake tra 94.4 0.018 6.2E-07 51.3 2.8 22 60-81 6-27 (272)
436 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.02 6.8E-07 47.0 2.9 21 60-80 8-28 (186)
437 2gk6_A Regulator of nonsense t 94.4 0.027 9.1E-07 56.5 4.3 37 42-81 183-219 (624)
438 2z43_A DNA repair and recombin 94.4 0.024 8.1E-07 51.9 3.6 26 56-81 105-131 (324)
439 4ag6_A VIRB4 ATPase, type IV s 94.4 0.018 6.1E-07 54.2 2.9 27 56-82 34-60 (392)
440 2r8r_A Sensor protein; KDPD, P 94.4 0.02 6.8E-07 49.4 2.9 23 60-82 9-31 (228)
441 3cbq_A GTP-binding protein REM 94.4 0.015 5.2E-07 48.8 2.1 21 60-80 26-46 (195)
442 1ksh_A ARF-like protein 2; sma 94.4 0.019 6.5E-07 47.3 2.7 23 59-81 20-42 (186)
443 2fg5_A RAB-22B, RAS-related pr 94.4 0.02 6.7E-07 47.7 2.8 22 60-81 26-47 (192)
444 2cjw_A GTP-binding protein GEM 94.4 0.021 7E-07 47.8 2.9 21 60-80 9-29 (192)
445 3dz8_A RAS-related protein RAB 94.4 0.02 6.9E-07 47.6 2.8 22 60-81 26-47 (191)
446 1zbd_A Rabphilin-3A; G protein 94.4 0.021 7.1E-07 47.9 2.9 22 60-81 11-32 (203)
447 3tkl_A RAS-related protein RAB 94.4 0.021 7.1E-07 47.4 2.9 22 60-81 19-40 (196)
448 2axn_A 6-phosphofructo-2-kinas 94.4 0.016 5.5E-07 56.7 2.5 23 60-82 38-60 (520)
449 2bov_A RAla, RAS-related prote 94.4 0.021 7.1E-07 47.9 2.9 22 60-81 17-38 (206)
450 3bwd_D RAC-like GTP-binding pr 94.3 0.022 7.6E-07 46.6 2.9 23 59-81 10-32 (182)
451 3t5g_A GTP-binding protein RHE 94.3 0.021 7.3E-07 46.7 2.8 22 59-80 8-29 (181)
452 3c5c_A RAS-like protein 12; GD 94.3 0.022 7.5E-07 47.3 2.9 22 60-81 24-45 (187)
453 1vg8_A RAS-related protein RAB 94.3 0.022 7.4E-07 47.9 2.9 22 60-81 11-32 (207)
454 2atv_A RERG, RAS-like estrogen 94.3 0.022 7.5E-07 47.5 2.9 22 59-80 30-51 (196)
455 3oes_A GTPase rhebl1; small GT 94.3 0.021 7.3E-07 47.9 2.8 22 60-81 27-48 (201)
456 2a5j_A RAS-related protein RAB 94.3 0.023 7.7E-07 47.3 2.9 22 60-81 24-45 (191)
457 1zd9_A ADP-ribosylation factor 94.3 0.023 7.8E-07 47.1 2.9 22 60-81 25-46 (188)
458 1z06_A RAS-related protein RAB 94.3 0.023 7.8E-07 47.1 2.9 21 60-80 23-43 (189)
459 3fdi_A Uncharacterized protein 94.3 0.023 7.7E-07 48.2 2.9 23 60-82 9-31 (201)
460 3kl4_A SRP54, signal recogniti 94.2 0.017 5.7E-07 55.0 2.2 25 60-84 100-124 (433)
461 2p5s_A RAS and EF-hand domain 94.2 0.023 7.9E-07 47.6 2.9 23 59-81 30-52 (199)
462 1x3s_A RAS-related protein RAB 94.2 0.023 7.9E-07 47.0 2.9 22 60-81 18-39 (195)
463 3reg_A RHO-like small GTPase; 94.2 0.023 8E-07 47.2 2.9 22 60-81 26-47 (194)
464 2bcg_Y Protein YP2, GTP-bindin 94.2 0.023 7.7E-07 47.8 2.8 22 60-81 11-32 (206)
465 2ew1_A RAS-related protein RAB 94.2 0.023 7.7E-07 48.0 2.8 22 60-81 29-50 (201)
466 2gf0_A GTP-binding protein DI- 94.2 0.023 7.7E-07 47.3 2.8 21 60-80 11-31 (199)
467 2iwr_A Centaurin gamma 1; ANK 94.2 0.017 5.8E-07 47.2 2.0 22 59-80 9-30 (178)
468 1gwn_A RHO-related GTP-binding 94.2 0.023 7.8E-07 48.1 2.8 23 59-81 30-52 (205)
469 2i1q_A DNA repair and recombin 94.2 0.024 8.3E-07 51.7 3.1 25 56-80 96-121 (322)
470 1zj6_A ADP-ribosylation factor 94.2 0.024 8.3E-07 46.8 2.8 22 59-80 18-39 (187)
471 2wsm_A Hydrogenase expression/ 94.2 0.023 7.9E-07 48.4 2.8 23 59-81 32-54 (221)
472 3iby_A Ferrous iron transport 94.1 0.023 8E-07 50.1 2.8 23 59-81 3-25 (256)
473 2h17_A ADP-ribosylation factor 94.1 0.022 7.7E-07 46.8 2.5 22 60-81 24-45 (181)
474 3cph_A RAS-related protein SEC 94.1 0.026 8.7E-07 47.6 2.9 21 60-80 23-43 (213)
475 2o52_A RAS-related protein RAB 94.1 0.024 8.3E-07 47.6 2.7 21 60-80 28-48 (200)
476 3a1s_A Iron(II) transport prot 94.1 0.025 8.5E-07 49.9 2.9 22 60-81 8-29 (258)
477 3lxw_A GTPase IMAP family memb 94.1 0.026 8.7E-07 49.5 2.9 22 60-81 24-45 (247)
478 2il1_A RAB12; G-protein, GDP, 94.0 0.023 7.8E-07 47.3 2.4 21 60-80 29-49 (192)
479 1g8f_A Sulfate adenylyltransfe 94.0 0.02 6.9E-07 55.6 2.2 23 60-82 398-420 (511)
480 2fh5_B SR-beta, signal recogni 94.0 0.028 9.6E-07 47.6 2.9 23 59-81 9-31 (214)
481 2h57_A ADP-ribosylation factor 94.0 0.021 7.1E-07 47.4 2.0 22 60-81 24-45 (190)
482 2b6h_A ADP-ribosylation factor 93.9 0.024 8.1E-07 47.3 2.4 21 59-79 31-51 (192)
483 2q3h_A RAS homolog gene family 93.9 0.028 9.5E-07 47.0 2.8 21 60-80 23-43 (201)
484 2qu8_A Putative nucleolar GTP- 93.9 0.026 9E-07 48.4 2.7 22 59-80 31-52 (228)
485 2hf9_A Probable hydrogenase ni 93.9 0.028 9.6E-07 48.0 2.8 23 59-81 40-62 (226)
486 4bas_A ADP-ribosylation factor 93.9 0.025 8.5E-07 47.1 2.4 22 60-81 20-41 (199)
487 2fv8_A H6, RHO-related GTP-bin 93.9 0.029 9.8E-07 47.3 2.8 23 59-81 27-49 (207)
488 1mky_A Probable GTP-binding pr 93.9 0.028 9.4E-07 53.8 3.0 22 60-81 183-204 (439)
489 2f7s_A C25KG, RAS-related prot 93.9 0.029 9.9E-07 47.6 2.8 22 60-81 28-49 (217)
490 2fu5_C RAS-related protein RAB 93.9 0.018 6.3E-07 47.2 1.5 21 60-80 11-31 (183)
491 1bif_A 6-phosphofructo-2-kinas 93.9 0.024 8.2E-07 54.7 2.5 23 60-82 42-64 (469)
492 4hlc_A DTMP kinase, thymidylat 93.8 0.029 9.8E-07 47.7 2.7 23 60-82 5-27 (205)
493 2j1l_A RHO-related GTP-binding 93.8 0.029 9.8E-07 47.7 2.7 22 59-80 36-57 (214)
494 3sfz_A APAF-1, apoptotic pepti 93.8 0.068 2.3E-06 57.6 6.2 47 34-80 122-170 (1249)
495 1u94_A RECA protein, recombina 93.8 0.031 1.1E-06 51.9 3.1 26 56-81 61-87 (356)
496 1j8m_F SRP54, signal recogniti 93.8 0.025 8.4E-07 51.1 2.4 26 58-83 98-124 (297)
497 3llu_A RAS-related GTP-binding 93.8 0.03 1E-06 46.8 2.8 23 60-82 23-45 (196)
498 4a1f_A DNAB helicase, replicat 93.8 0.041 1.4E-06 50.6 3.8 34 45-81 36-70 (338)
499 2a5y_B CED-4; apoptosis; HET: 93.8 0.039 1.3E-06 54.3 3.9 41 39-79 131-174 (549)
500 2gco_A H9, RHO-related GTP-bin 93.7 0.032 1.1E-06 46.8 2.8 22 60-81 28-49 (201)
No 1
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=100.00 E-value=8.9e-35 Score=274.22 Aligned_cols=333 Identities=50% Similarity=0.833 Sum_probs=247.3
Q ss_pred CCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhh
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (369)
..+.++|++++|++.++..+..+.+.+..++++|+||||||||++|++++..++......+.++++.....+.....+.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL- 95 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS-
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh-
Confidence 3456689999999998887776665444566999999999999999999998864332223334333222222211111
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
. +.......+++..+...+...++|..+....+.++...+.+|.+..++++++||||++.+++..++.|+++|+
T Consensus 96 ~------~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le 169 (350)
T 1g8p_A 96 S------TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ 169 (350)
T ss_dssp C------CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred c------cccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence 0 0000001123334455566677887777666666766777899988899999999999999999999999999
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQ 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 268 (369)
++...+.+.|.....+.++.+|+|+||.++.++++|++||.+++.+++|+..+.+..|+........++..+...+....
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 249 (350)
T 1g8p_A 170 SGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKD 249 (350)
T ss_dssp HSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccch
Confidence 98777777777778888999999999877779999999999889999998788887888765443333444555556667
Q ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccccC
Q 017575 269 AKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRLRK 348 (369)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~~ 348 (369)
..+..++..++.....+.++++++++|..++...+..+.|.+.++++.|.+.|.+++++.|+.+|+.+++.+++.||+..
T Consensus 250 ~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~~ 329 (350)
T 1g8p_A 250 MDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLRR 329 (350)
T ss_dssp HHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcccc
Confidence 77788887777777778999999999999999888767899999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHhhh
Q 017575 349 DPLESIDSGLLIIEKFYEVF 368 (369)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~ 368 (369)
.|.+....++.+.++++++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~ 349 (350)
T 1g8p_A 330 DPLDEAGSTARVARTVEETL 349 (350)
T ss_dssp -----------CHHHHHHHC
T ss_pred CccccCchhHHHHHHHHhhC
Confidence 88877777788888888876
No 2
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.96 E-value=1.1e-29 Score=237.80 Aligned_cols=277 Identities=22% Similarity=0.289 Sum_probs=201.0
Q ss_pred CccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
+..++|++.+++.+..++. ..++++|+||||||||+++++++..++.. +..+...++..+.++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~--~~~~vll~G~pGtGKT~la~~la~~~~~~-------~~~i~~~~~~~~~~l~g------ 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGIC--TGGHILLEGVPGLAKTLSVNTLAKTMDLD-------FHRIQFTPDLLPSDLIG------ 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHH--HTCCEEEESCCCHHHHHHHHHHHHHTTCC-------EEEEECCTTCCHHHHHE------
T ss_pred ccceeCcHHHHHHHHHHHH--cCCeEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEecCCCCChhhcCC------
Confidence 4578999999999988885 44569999999999999999999988422 11111111222222221
Q ss_pred cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCcee
Q 017575 115 ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTV 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~ 194 (369)
..... ...+...+.+|.+. ++++||||++++++..++.|++.|+++.+++
T Consensus 91 -------------------------~~~~~--~~~~~~~~~~g~l~---~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 91 -------------------------TMIYN--QHKGNFEVKKGPVF---SNFILADEVNRSPAKVQSALLECMQEKQVTI 140 (331)
T ss_dssp -------------------------EEEEE--TTTTEEEEEECTTC---SSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred -------------------------ceeec--CCCCceEeccCccc---ccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence 11000 01122223345442 5799999999999999999999999988776
Q ss_pred eecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHH
Q 017575 195 EREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAK 270 (369)
Q Consensus 195 ~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 270 (369)
. |.....+..+.+++|+||.+. .+++++++||.+++.+++| +.+.+..|+.......... . . .+..
T Consensus 141 ~--g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p-~~~~~~~il~~~~~~~~~~-~-~-----~~~~ 210 (331)
T 2r44_A 141 G--DTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYL-DKESELEVMRRVSNMNFNY-Q-V-----QKIV 210 (331)
T ss_dssp T--TEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCC-CHHHHHHHHHHHHCTTCCC-C-C-----CCCS
T ss_pred C--CEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCC-CHHHHHHHHHhccccCcch-h-c-----cccC
Confidence 4 777888889999999998763 2899999999988999999 6677778887653321000 0 0 0001
Q ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-----------------CCCCCchhHHHHHHHHHHHHHcCCCCCCHHH
Q 017575 271 LQQQIASARSSLPAVQIDHDLKVKISKVCAEL-----------------NVDGLRGDIVSNRAAKALAALKGRDKVSAED 333 (369)
Q Consensus 271 ~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------------~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~ 333 (369)
...++..++.....+.+++++++++.+++... +. |+|.+..+++.|++.|.++|++.|+++|
T Consensus 211 ~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~-s~R~~~~ll~~a~a~A~l~g~~~v~~~d 289 (331)
T 2r44_A 211 SKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGA-STRAAINLNRVAKAMAFFNNRDYVLPED 289 (331)
T ss_dssp CHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECC-CHHHHHHHHHHHHHHHHHTTCSBCCHHH
T ss_pred CHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCc-ChhHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 22344444444457899999999999877532 33 7899999999999999999999999999
Q ss_pred HHHHHhHHhcccccCCCCC---CCChhHHHHHHHHhh
Q 017575 334 IATVMPNCLRHRLRKDPLE---SIDSGLLIIEKFYEV 367 (369)
Q Consensus 334 i~~a~~~vl~~r~~~~~~~---~~~~~~~~~~~~~~~ 367 (369)
+.+++..++.||+...++. +++.+++++++++.+
T Consensus 290 v~~~~~~vl~~r~~~~~~~~~~~~~~~~i~~~i~~~~ 326 (331)
T 2r44_A 290 IKEVAYDILNHRIILNYEAEAEGISTRQIIETILRKV 326 (331)
T ss_dssp HHHHHHHHHTTTSEECHHHHHTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhHhhccCCHHHHhcCCCHHHHHHHHHhcC
Confidence 9999999999999877664 567788888887764
No 3
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.94 E-value=2.1e-26 Score=224.79 Aligned_cols=259 Identities=17% Similarity=0.178 Sum_probs=181.3
Q ss_pred cccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEEL 116 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
.++|++.+++.+..++. ..++++|+||||||||++|++++..+.....+....+.. ..++++
T Consensus 23 ~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~------~t~~dL---------- 84 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF------STPEEV---------- 84 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT------CCHHHH----------
T ss_pred hhHHHHHHHHHHHHHHh--cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc------CCHHHh----------
Confidence 47899999999988885 556799999999999999999999885322111111100 011222
Q ss_pred hhhhhccccccCCCCCchHhhhcccchhHHhhhccc-ccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceee
Q 017575 117 SITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVK-AFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVE 195 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~ 195 (369)
+|..........+.. ....|.+. .++|+||||++++++..++.|+++|+++.+++.
T Consensus 85 ---------------------~G~~~~~~~~~~g~~~~~~~g~l~--~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~ 141 (500)
T 3nbx_X 85 ---------------------FGPLSIQALKDEGRYERLTSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERQFRNG 141 (500)
T ss_dssp ---------------------HCCBC----------CBCCTTSGG--GCSEEEEESGGGCCHHHHHHHHHHHHSSEEECS
T ss_pred ---------------------cCcccHHHHhhchhHHhhhccCCC--cceeeeHHhHhhhcHHHHHHHHHHHHHHhccCC
Confidence 222111111111111 23345443 367999999999999999999999999887764
Q ss_pred ecceeeeecCceEEEeecCCCC--CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHH
Q 017575 196 REGISISHPARFILIGSGNPEE--GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQ 273 (369)
Q Consensus 196 ~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (369)
|.+...+..+ +|+|+|+.+ ..+.++++|||.+++.+++|+.++.+..|+.........+. ...+.....
T Consensus 142 --G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~------~~~~~~~~e 212 (500)
T 3nbx_X 142 --AHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPV------PDALQVTDE 212 (500)
T ss_dssp --SSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCS------CTTTSBCHH
T ss_pred --CCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCC------CccceecHH
Confidence 6677777776 455556433 34668999999999999999877777788775432111110 001122345
Q ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHH-------cCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 274 QIASARSSLPAVQIDHDLKVKISKVCAE-------LNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 274 ~i~~~~~~~~~~~i~~~~~~~l~~~~~~-------~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
++..++.....+.+++++.+++..+... .++ |+|.+..+++.|++.|.++|++.|+++|+. ++..+++||+
T Consensus 213 ~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~i-S~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~hr~ 290 (500)
T 3nbx_X 213 EYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYV-SDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLWYDA 290 (500)
T ss_dssp HHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCC-CHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSCSSH
T ss_pred HHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCcc-chhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhhcCc
Confidence 6666666677899999999999998853 355 889999999999999999999999999999 9999999998
Q ss_pred c
Q 017575 347 R 347 (369)
Q Consensus 347 ~ 347 (369)
.
T Consensus 291 ~ 291 (500)
T 3nbx_X 291 Q 291 (500)
T ss_dssp H
T ss_pred h
Confidence 3
No 4
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.94 E-value=2.4e-26 Score=218.27 Aligned_cols=244 Identities=22% Similarity=0.194 Sum_probs=176.7
Q ss_pred ccChHHHHHHhhhhhccCCCC--------eeEEecCCCCChhHHHHHH-HhccCcceeecCCCCCCCCCCcchhhhhhhh
Q 017575 38 IVGQEEMKLCLLLNVIDPKIG--------GVMIMGDRGTGKSTTVRSL-VDLLPVIKVVVGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g--------~vlL~Gp~G~GKTtla~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (369)
|+|++.+++++.++++ +| |+||+|+||+ ||++++++ +..++...+..+. .
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~-----------~------ 273 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLR-----------R------ 273 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGG-----------G------
T ss_pred cCCCHHHHHHHHHHHc---CCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCC-----------C------
Confidence 8899999999999995 44 7999999999 99999999 8887643211000 0
Q ss_pred hhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 109 SVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
.....+.+. .... +| ..+.+|.+..|+++++|+||++++++..|..|++.|+
T Consensus 274 -----------------------ss~~gLt~s--~r~~--tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaME 325 (506)
T 3f8t_A 274 -----------------------TELTDLTAV--LKED--RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMD 325 (506)
T ss_dssp -----------------------CCHHHHSEE--EEES--SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -----------------------CCccCceEE--EEcC--CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHh
Confidence 000011111 0001 34 6778999999999999999999999999999999999
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCC----------CCCCHhHHhhhcccee-ecCCCCHHHHHHHHHHhhhccCCC
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEE----------GELRPQLLDRFGMHAQ-VGTVRDAELRVKIVEERARFDKNP 257 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~----------~~l~~al~~R~~~~i~-~~~~~~~~~~~~il~~~~~~~~~~ 257 (369)
++.+++. |. +.+.+|++|||+||++ ..++++++|||++.+. +++|+ .+.... .
T Consensus 326 e~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd-~e~d~e--~--------- 389 (506)
T 3f8t_A 326 KGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPR-PGEPEE--Q--------- 389 (506)
T ss_dssp HSEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC----------------------
T ss_pred CCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCC-hhHhhc--c---------
Confidence 9999886 55 8899999999999975 2589999999976443 55553 332210 0
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc---------------CCCCCchhHHHHHHHHHHHH
Q 017575 258 KEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL---------------NVDGLRGDIVSNRAAKALAA 322 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~---------------~~~s~R~~~~ll~~a~a~A~ 322 (369)
.......+.+.+++..++.....+.+++++.++|.+++..+ ++ |+|++..++++|+|+|+
T Consensus 390 ----~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~gi-SpR~leaLiRlA~A~A~ 464 (506)
T 3f8t_A 390 ----DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPV-TRRQLESVERLAKAHAR 464 (506)
T ss_dssp --------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-CHHHHHHHHHHHHHHHH
T ss_pred ----cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccc-cHHHHHHHHHHHHHHHH
Confidence 00012345677777777744446899999999988765321 34 89999999999999999
Q ss_pred HcCCCCCCHHHHHHHHhHHhcc--cccCCCC
Q 017575 323 LKGRDKVSAEDIATVMPNCLRH--RLRKDPL 351 (369)
Q Consensus 323 l~~~~~v~~~~i~~a~~~vl~~--r~~~~~~ 351 (369)
+++++.|+++|+..|+.++... .+..+|+
T Consensus 465 L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~ 495 (506)
T 3f8t_A 465 MRLSDDVEPEDVDIAAELVDWYLETAMQIPG 495 (506)
T ss_dssp HTTCSEECHHHHHHHHHHHHHHHHHTTC---
T ss_pred HcCcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999987664 3333544
No 5
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.93 E-value=9.2e-26 Score=225.84 Aligned_cols=256 Identities=22% Similarity=0.277 Sum_probs=183.0
Q ss_pred ccccChHHHHHHhhhhhccCCCC--------------eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIG--------------GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA 101 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g--------------~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 101 (369)
..++|++.+++++.+++. +| ++||+||||||||++|++++..++...+..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~---~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~------- 364 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF---GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTA------- 364 (595)
T ss_dssp STTSCCHHHHHHHTTTTT---CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTT-------
T ss_pred chhcChHHHHHHHHHHHh---CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccc-------
Confidence 468999999999999884 44 799999999999999999999985332100000000
Q ss_pred hhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHH
Q 017575 102 MGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 181 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~ 181 (369)
. .+.+.... ....+.....+|.+..++++++||||+++++++.++
T Consensus 365 --~-------------------------------~l~~~~~~--~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~ 409 (595)
T 3f9v_A 365 --A-------------------------------GLTAAVVR--EKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRV 409 (595)
T ss_dssp --T-------------------------------TSEEECSS--GGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHH
T ss_pred --c-------------------------------cccceeee--ccccccccccCCeeEecCCCcEEeehhhhCCHhHhh
Confidence 0 00000000 002344556688899999999999999999999999
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC------------CCCHhHHhhhccceeecCCCCHHHHHHHHHH
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG------------ELRPQLLDRFGMHAQVGTVRDAELRVKIVEE 249 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------~l~~al~~R~~~~i~~~~~~~~~~~~~il~~ 249 (369)
.|+++|+++.+++.+.|.....+.++.+|+|+||..+ .++++|+|||++.+.+....+.+ ...|+.+
T Consensus 410 ~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~ 488 (595)
T 3f9v_A 410 AIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANY 488 (595)
T ss_dssp HHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHH
T ss_pred hhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHH
Confidence 9999999999998888888999999999999998752 68999999997656555554555 6566554
Q ss_pred hhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH------------cCCCCCchhHHHHHHH
Q 017575 250 RARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE------------LNVDGLRGDIVSNRAA 317 (369)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~------------~~~~s~R~~~~ll~~a 317 (369)
-...+.... ..-....+.+.+.+..++.... ..+++++.+.|.+++.. .++ |+|.+..++++|
T Consensus 489 il~~~~~~~---~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~-s~R~l~~lirla 563 (595)
T 3f9v_A 489 ILDVHSGKS---TKNIIDIDTLRKYIAYARKYVT-PKITSEAKNLITDFFVEMRKKSSETPDSPILI-TPRQLEALIRIS 563 (595)
T ss_dssp HHTTTCCCS---SSSTTCCTTTHHHHHHHHHHHC-CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS-STTTTTHHHHHH
T ss_pred HHHHhhccc---cccCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHhhccCCCccccc-cHHHHHHHHHHH
Confidence 322111000 0000112234445555554322 37888899999988764 344 899999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 318 KALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 318 ~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
+++|++++++.|+++|+.+|+.++-
T Consensus 564 ~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 564 EAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.85 E-value=1.6e-20 Score=189.02 Aligned_cols=281 Identities=22% Similarity=0.330 Sum_probs=176.2
Q ss_pred CCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce-e---ecCCCCCCCCCCcchh-
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK-V---VVGDPYNSDPEDPEAM- 102 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~-~---~~~~~~~~~~~~~~~~- 102 (369)
..++..|++++|+..+++.+..++ ..|+ ++|+|||||||||++++|++.+++.. . ..+.+...........
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i---~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p 110 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAA---NQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVP 110 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHH---HTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEE
T ss_pred cccccccceEECchhhHhhccccc---cCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEe
Confidence 445568999999999999999998 4555 99999999999999999999997543 1 1111111100000000
Q ss_pred ---hhhhhhhhhc--------------------cccch--hh-hhccccccCCCCCchHhhhcccchh----HHhhhc-c
Q 017575 103 ---GIEVRESVVK--------------------GEELS--IT-FSKINMVDLPLGATEDRVCGTIDIE----KALTEG-V 151 (369)
Q Consensus 103 ---~~~~~~~~~~--------------------~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g-~ 151 (369)
...+...... ..++. .. ....+++. ........++|.++.. ..+..+ .
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHhcCceEEechhhcCCcccccc
Confidence 0000000000 00000 00 00000000 0122344455544321 111222 2
Q ss_pred cccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecce----------eeeecCceEEEeecCCCC-CCC
Q 017575 152 KAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGI----------SISHPARFILIGSGNPEE-GEL 220 (369)
Q Consensus 152 ~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~----------~~~~~~~~~li~t~n~~~-~~l 220 (369)
....+|.+..++++++||||++.+++..++.|+++|+++.+.+. +. ....+.++.+|+++|+.. ..+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 23468899999999999999999999999999999999876654 22 344567899999999742 248
Q ss_pred CHhHHhhhc---cceeecCC--CCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHH-HHhhCCCcccCHHHHHH
Q 017575 221 RPQLLDRFG---MHAQVGTV--RDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIAS-ARSSLPAVQIDHDLKVK 294 (369)
Q Consensus 221 ~~al~~R~~---~~i~~~~~--~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~i~~~~~~~ 294 (369)
+++|++||. +.+.++.. ...+....++. .+.. .........++++++..
T Consensus 268 ~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~-------------------------~~~~~~~~~~~~~~ls~eAl~~ 322 (604)
T 3k1j_A 268 HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQ-------------------------FVAQEVKRDGKIPHFTKEAVEE 322 (604)
T ss_dssp CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHH-------------------------HHHHHHHHHCSSCCBBHHHHHH
T ss_pred CHHHHHHhhccceEeeccccccCCHHHHHHHHH-------------------------HHHHHHhhccCcccCCHHHHHH
Confidence 999999996 34544332 12333322221 1121 12123346899999999
Q ss_pred HHHHHHHcCCC------CCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 295 ISKVCAELNVD------GLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 295 l~~~~~~~~~~------s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
|..++...... +.|.+.++++.|.+.|..++++.|+.+|+.+|+..
T Consensus 323 Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 323 IVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 99877643221 57999999999999999999999999999999864
No 7
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-18 Score=163.92 Aligned_cols=222 Identities=18% Similarity=0.222 Sum_probs=140.3
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...|++|.|.+++++.+...+.- +...++||+||||||||++|+++|+.+.. +|..+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v~ 214 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRVS 214 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEEE
Confidence 3556899999988887776555421 12345999999999999999999998842 111000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.++ +.....+..+..+... +. ......|+|+||||++.+.
T Consensus 215 ------~s~-------------------l~sk~vGese~~vr~l-------------F~--~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 215 ------GAE-------------------LVQKYIGEGSRMVREL-------------FV--MAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp ------GGG-------------------GSCSSTTHHHHHHHHH-------------HH--HHHHTCSEEEEEESSSCCT
T ss_pred ------hHH-------------------hhccccchHHHHHHHH-------------HH--HHHHhCCceEeeecchhhc
Confidence 000 0000000000000000 00 0112358899999996553
Q ss_pred H-----------H---HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 177 D-----------H---LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 177 ~-----------~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
+ . +.+.|+..|+.- .....+.+|+|+|- +..+++||++ ||+.+|.++.| +.
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~V~vIaATNr-pd~LDpAllRpGRfD~~I~i~lP-d~ 321 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQLDGF-----------ETSKNIKIIMATNR-LDILDPALLRPGRIDRKIEFPPP-SV 321 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHHHTT-----------TCCCCEEEEEEESC-SSSSCHHHHSTTSSCCEEECCCC-CH
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhhhcc-----------CCCCCeEEEeccCC-hhhCCHhHcCCCcCceEEEcCCc-CH
Confidence 2 2 345555555531 12346889999994 4569999998 99999999999 67
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL-NVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-~~~s~R~~~~ll~~a~a 319 (369)
+.+..|++... + +..++.++ .+..++... |+ |...+..+++-|..
T Consensus 322 ~~R~~Il~~~~---------------------------~----~~~l~~dv--dl~~lA~~t~G~-SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 322 AARAEILRIHS---------------------------R----KMNLTRGI--NLRKVAEKMNGC-SGADVKGVCTEAGM 367 (405)
T ss_dssp HHHHHHHHHHH---------------------------T----TSBCCSSC--CHHHHHHHCCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------------c----CCCCCccC--CHHHHHHHCCCC-CHHHHHHHHHHHHH
Confidence 77877765211 1 12222221 023334433 55 77899999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhccc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~r 345 (369)
.|..+++..|+.+|+..|+..+....
T Consensus 368 ~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 368 YALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 99999999999999999999887643
No 8
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.8e-19 Score=168.90 Aligned_cols=226 Identities=18% Similarity=0.235 Sum_probs=141.6
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...|++|.|.+++++.+...+.- +...++||+||||||||++|+++|+.+... |..+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-------fi~v~ 248 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-------FLRIV 248 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-------EEEEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-------EEEEE
Confidence 4556899999988887766555421 123459999999999999999999988421 11000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.++ +.....+..+..+... +. ......|+|+||||++.+-
T Consensus 249 ------~s~-------------------l~sk~vGesek~ir~l-------------F~--~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 249 ------GSE-------------------LIQKYLGDGPRLCRQI-------------FK--VAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp ------SGG-------------------GCCSSSSHHHHHHHHH-------------HH--HHHHTCSEEEEEEEESSSS
T ss_pred ------HHH-------------------hhhccCchHHHHHHHH-------------HH--HHHhcCCcEEEEehhhhhc
Confidence 000 0000000000000000 00 0112358899999995442
Q ss_pred -----------HHHH---HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 177 -----------DHLV---DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 177 -----------~~~~---~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
.... ..|+..|+. ......+.+|+|+|- +..+++||++ ||+.+|.++.| +.
T Consensus 289 ~~R~~~~~~~~~~~~~~l~~LL~~lDg-----------~~~~~~ViVIaATNr-pd~LDpALlRpGRfD~~I~v~lP-d~ 355 (437)
T 4b4t_I 289 TKRYDSNSGGEREIQRTMLELLNQLDG-----------FDDRGDVKVIMATNK-IETLDPALIRPGRIDRKILFENP-DL 355 (437)
T ss_dssp CCCSCSSCSSCCHHHHHHHHHHHHHHH-----------CCCSSSEEEEEEESC-STTCCTTSSCTTTEEEEECCCCC-CH
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHhhC-----------cCCCCCEEEEEeCCC-hhhcCHHHhcCCceeEEEEcCCc-CH
Confidence 1233 444444442 112346889999994 4469999998 99999999999 67
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+.... . ...+++++ +..|+..+ .|+ |.+.+..+++-|..
T Consensus 356 ~~R~~Il~~~l---------------------------~----~~~l~~dvdl~~LA~~T--~Gf-SGADI~~l~~eA~~ 401 (437)
T 4b4t_I 356 STKKKILGIHT---------------------------S----KMNLSEDVNLETLVTTK--DDL-SGADIQAMCTEAGL 401 (437)
T ss_dssp HHHHHHHHHHH---------------------------T----TSCBCSCCCHHHHHHHC--CSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------------c----CCCCCCcCCHHHHHHhC--CCC-CHHHHHHHHHHHHH
Confidence 77877765221 1 12222221 33333332 255 77899999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhcccccCC
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRHRLRKD 349 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~r~~~~ 349 (369)
.|..+++..|+.+|+..|+..+.......+
T Consensus 402 ~Air~~~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 402 LALRERRMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHcCCCccCHHHHHHHHHHHhCCCChhh
Confidence 999999999999999999998887665433
No 9
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=7.3e-18 Score=157.77 Aligned_cols=224 Identities=18% Similarity=0.256 Sum_probs=149.5
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhcc-----CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCc
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVID-----PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDP 99 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~-----~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 99 (369)
.....+|. .|++++|++.+++.+...+.. ....+++|+||||||||++|++++..+... +.... +
T Consensus 19 ~~~~~~p~-~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-------~~~~~--~ 88 (338)
T 3pfi_A 19 YETSLRPS-NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-------IKTTA--A 88 (338)
T ss_dssp ----CCCC-SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-------EEEEE--G
T ss_pred hhhccCCC-CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-------eEEec--c
Confidence 33444444 899999999988777666531 112359999999999999999999887421 10000 0
Q ss_pred chhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHH
Q 017575 100 EAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL 179 (369)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~ 179 (369)
... ..... +.......++++++||||++.+++..
T Consensus 89 ~~~-----------------------------~~~~~-----------------~~~~~~~~~~~~vl~lDEi~~l~~~~ 122 (338)
T 3pfi_A 89 PMI-----------------------------EKSGD-----------------LAAILTNLSEGDILFIDEIHRLSPAI 122 (338)
T ss_dssp GGC-----------------------------CSHHH-----------------HHHHHHTCCTTCEEEEETGGGCCHHH
T ss_pred hhc-----------------------------cchhH-----------------HHHHHHhccCCCEEEEechhhcCHHH
Confidence 000 00000 00011123568899999999999999
Q ss_pred HHHHHHHHhcCCceeeecc----ee--eeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhc
Q 017575 180 VDVLLDSAASGWNTVEREG----IS--ISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARF 253 (369)
Q Consensus 180 ~~~L~~~l~~~~~~~~~~~----~~--~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~ 253 (369)
+..|+..|+++.+.+.... .. ...+ ++.+|+++|... .++++|++||+..+.+++|+ .+....++...
T Consensus 123 ~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-~l~~~L~~R~~~~i~l~~~~-~~e~~~il~~~--- 196 (338)
T 3pfi_A 123 EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-MLSNPLRDRFGMQFRLEFYK-DSELALILQKA--- 196 (338)
T ss_dssp HHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG-GSCHHHHTTCSEEEECCCCC-HHHHHHHHHHH---
T ss_pred HHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc-ccCHHHHhhcCEEeeCCCcC-HHHHHHHHHHH---
Confidence 9999999998775442111 11 2222 589999999644 48999999997779999884 45555554421
Q ss_pred cCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHH
Q 017575 254 DKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAED 333 (369)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~ 333 (369)
.. ...+.+++++...|...+ +. ++|.+.+++..+...|...+...|+.++
T Consensus 197 ----------------------~~----~~~~~~~~~~~~~l~~~~---~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~ 246 (338)
T 3pfi_A 197 ----------------------AL----KLNKTCEEKAALEIAKRS---RS-TPRIALRLLKRVRDFADVNDEEIITEKR 246 (338)
T ss_dssp ----------------------HH----HTTCEECHHHHHHHHHTT---TT-CHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred ----------------------HH----hcCCCCCHHHHHHHHHHH---Cc-CHHHHHHHHHHHHHHHHhhcCCccCHHH
Confidence 11 113678888888877733 22 5799999999999999999888999999
Q ss_pred HHHHHhH
Q 017575 334 IATVMPN 340 (369)
Q Consensus 334 i~~a~~~ 340 (369)
+..++..
T Consensus 247 ~~~~~~~ 253 (338)
T 3pfi_A 247 ANEALNS 253 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 10
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.3e-18 Score=161.02 Aligned_cols=223 Identities=18% Similarity=0.267 Sum_probs=138.2
Q ss_pred CCCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSD 95 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 95 (369)
..|...|++|.|.+++++.+...+.. +...++||+||||||||++|+++|+.+... |..+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-------f~~v 246 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-------FLKL 246 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-------EEEE
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-------EEEE
Confidence 34566899999998887777555421 123459999999999999999999988421 1000
Q ss_pred CCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC
Q 017575 96 PEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l 175 (369)
. .++ +.....+.....+... +. ......|+|+||||++.+
T Consensus 247 ~------~s~-------------------l~~~~vGese~~ir~l-------------F~--~A~~~aP~IifiDEiDal 286 (434)
T 4b4t_M 247 A------APQ-------------------LVQMYIGEGAKLVRDA-------------FA--LAKEKAPTIIFIDELDAI 286 (434)
T ss_dssp E------GGG-------------------GCSSCSSHHHHHHHHH-------------HH--HHHHHCSEEEEEECTHHH
T ss_pred e------hhh-------------------hhhcccchHHHHHHHH-------------HH--HHHhcCCeEEeecchhhh
Confidence 0 000 0000000000000000 00 011235889999999322
Q ss_pred -----------CHHH---HHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCC
Q 017575 176 -----------DDHL---VDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRD 239 (369)
Q Consensus 176 -----------~~~~---~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~ 239 (369)
+... ...|+..|+.. .....+.+|+|+|- +..+++||++ ||+.+|.++.| +
T Consensus 287 ~~~R~~~~~~~~~~~~~~~~~lL~~ldg~-----------~~~~~ViVIaaTNr-p~~LD~AllRpGRfD~~I~i~lP-d 353 (434)
T 4b4t_M 287 GTKRFDSEKSGDREVQRTMLELLNQLDGF-----------SSDDRVKVLAATNR-VDVLDPALLRSGRLDRKIEFPLP-S 353 (434)
T ss_dssp HCCCSSGGGGTTHHHHHHHHHHHHHHTTS-----------CSSCSSEEEEECSS-CCCCCTTTCSTTSEEEEEECCCC-C
T ss_pred hhccCCCCCCCchHHHHHHHHHHHHhhcc-----------CCCCCEEEEEeCCC-chhcCHhHhcCCceeEEEEeCCc-C
Confidence 1223 34455555431 11246789999994 4569999988 99999999999 6
Q ss_pred HHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 240 AELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 240 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
.+.+..|++... +. ..+++++ +..|+..+ .|+ |.+.+..+++-|.
T Consensus 354 ~~~R~~Il~~~~---------------------------~~----~~~~~dvdl~~lA~~t--~G~-sGADi~~l~~eA~ 399 (434)
T 4b4t_M 354 EDSRAQILQIHS---------------------------RK----MTTDDDINWQELARST--DEF-NGAQLKAVTVEAG 399 (434)
T ss_dssp HHHHHHHHHHHH---------------------------HH----SCBCSCCCHHHHHHHC--SSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------------------cC----CCCCCcCCHHHHHHhC--CCC-CHHHHHHHHHHHH
Confidence 777878865221 11 1111111 23333332 255 7789999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHhHHhccc
Q 017575 319 ALAALKGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 319 a~A~l~~~~~v~~~~i~~a~~~vl~~r 345 (369)
..|..+++..|+.+|+.+|+..+...+
T Consensus 400 ~~a~r~~~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 400 MIALRNGQSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHSCSSSC
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhCCC
Confidence 999999999999999999998776543
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.4e-17 Score=158.68 Aligned_cols=221 Identities=18% Similarity=0.234 Sum_probs=138.5
Q ss_pred CCCCCCccccChHHHHHHhhhhhc------------c-CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI------------D-PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~------------~-~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...|++|.|.+++++.+...+. . ....++||+||||||||++|+++|+.+.. +|..+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRVI 275 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEEE
Confidence 455689999998888777654431 0 12345999999999999999999998842 110000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.++ ++....+..+..+... +. ......|+|+|+||++.+-
T Consensus 276 ------~s~-------------------L~sk~vGesek~ir~l-------------F~--~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 276 ------GSE-------------------LVQKYVGEGARMVREL-------------FE--MARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp ------GGG-------------------GCCCSSSHHHHHHHHH-------------HH--HHHHTCSEEEEEECCTTTS
T ss_pred ------hHH-------------------hhcccCCHHHHHHHHH-------------HH--HHHhcCCceEeeccccccc
Confidence 000 0000000000000000 00 0112358899999996542
Q ss_pred H-----------H---HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 177 D-----------H---LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 177 ~-----------~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
. . ....|+..|+.. .....+.+|+|+|- +..+++||++ ||+.+|.++.| +.
T Consensus 316 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~ViVIaATNr-pd~LDpALlRpGRFD~~I~i~lP-d~ 382 (467)
T 4b4t_H 316 GARFDDGAGGDNEVQRTMLELITQLDGF-----------DPRGNIKVMFATNR-PNTLDPALLRPGRIDRKVEFSLP-DL 382 (467)
T ss_dssp BCCSSSSCGGGGHHHHHHHHHHHHHHSS-----------CCTTTEEEEEECSC-TTSBCHHHHSTTTCCEEECCCCC-CH
T ss_pred ccccCcCCCccHHHHHHHHHHHHHhhcc-----------CCCCcEEEEeCCCC-cccCChhhhccccccEEEEeCCc-CH
Confidence 1 2 334445555421 12346889999994 4569999998 99999999999 67
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|++... + ...++.++ +..|+..+ .|+ |.+.+..+++-|..
T Consensus 383 ~~R~~Ilk~~l---------------------------~----~~~l~~dvdl~~LA~~T--~Gf-SGADI~~l~~eAa~ 428 (467)
T 4b4t_H 383 EGRANIFRIHS---------------------------K----SMSVERGIRWELISRLC--PNS-TGAELRSVCTEAGM 428 (467)
T ss_dssp HHHHHHHHHHH---------------------------T----TSCBCSSCCHHHHHHHC--CSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------------c----CCCCCCCCCHHHHHHHC--CCC-CHHHHHHHHHHHHH
Confidence 77877765221 1 12222211 23343333 255 77899999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.|..+++..|+.+|+..|+..+...
T Consensus 429 ~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 429 FAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccCHHHHHHHHHHHhcC
Confidence 9999999999999999999987653
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-17 Score=159.81 Aligned_cols=221 Identities=17% Similarity=0.197 Sum_probs=137.2
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...|++|.|.+++++.+...+.. +...++||+||||||||++|+++|+.+... |..+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-------~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-------FIFSP 247 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-------EEEEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-------EEEEe
Confidence 3556899999988887766544421 123459999999999999999999988421 10000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.++ ++....+.+...+... + .......|+|+||||++.+.
T Consensus 248 ------~s~-------------------l~sk~~Gese~~ir~~-------------F--~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 248 ------ASG-------------------IVDKYIGESARIIREM-------------F--AYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp ------GGG-------------------TCCSSSSHHHHHHHHH-------------H--HHHHHSCSEEEEEECCCSSS
T ss_pred ------hhh-------------------hccccchHHHHHHHHH-------------H--HHHHhcCCceeeeecccccc
Confidence 000 0000000000000000 0 00112368999999996442
Q ss_pred -----------HH---HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhh--hccceeecCCCCH
Q 017575 177 -----------DH---LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDR--FGMHAQVGTVRDA 240 (369)
Q Consensus 177 -----------~~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R--~~~~i~~~~~~~~ 240 (369)
.. +.+.|+..|+.. .....+.+|+|+|- +..+++||+++ |+.+|.++.| +.
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~vivI~ATNr-p~~LDpAllRpGRfD~~I~i~lP-d~ 354 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGF-----------DNLGQTKIIMATNR-PDTLDPALLRPGRLDRKVEIPLP-NE 354 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSS-----------SCTTSSEEEEEESS-TTSSCTTTTSTTSEEEEECCCCC-CH
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhcc-----------cCCCCeEEEEecCC-chhhCHHHhCCCccceeeecCCc-CH
Confidence 12 345566666531 11246788999994 44699999885 9999999998 67
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL-NVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+.... .. ..++.++ .+..++... |+ |.+.+..++.-|..
T Consensus 355 ~~R~~Il~~~~---------------------------~~----~~~~~d~--dl~~lA~~t~G~-sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 355 AGRLEIFKIHT---------------------------AK----VKKTGEF--DFEAAVKMSDGF-NGADIRNCATEAGF 400 (437)
T ss_dssp HHHHHHHHHHH---------------------------HT----SCBCSCC--CHHHHHHTCCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------------cC----CCCCccc--CHHHHHHhCCCC-CHHHHHHHHHHHHH
Confidence 77877765221 11 1111111 023334332 55 77899999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.|..+++..|+.+|+..|+..+...
T Consensus 401 ~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 401 FAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987654
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=3.1e-17 Score=149.74 Aligned_cols=228 Identities=20% Similarity=0.216 Sum_probs=144.6
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCC
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNS 94 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 94 (369)
...|...|++++|++.+++.+...+.. ....+++|+||||||||+++++++..+...-....
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~----- 83 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV----- 83 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE-----
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe-----
Confidence 355667899999999988877655421 12334999999999999999999988742210000
Q ss_pred CCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCC
Q 017575 95 DPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~ 174 (369)
...+. ....+.....+. . .........|+++||||++.
T Consensus 84 --------~~~~~-------------------~~~~~~~~~~~~----------~-----~~~~~~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 84 --------GSELV-------------------KKFIGEGASLVK----------D-----IFKLAKEKAPSIIFIDEIDA 121 (285)
T ss_dssp --------GGGGC-------------------CCSTTHHHHHHH----------H-----HHHHHHHTCSEEEEEETTHH
T ss_pred --------hHHHH-------------------HhccchHHHHHH----------H-----HHHHHHHcCCeEEEEECHHH
Confidence 00000 000000000000 0 00111223567999999976
Q ss_pred C-----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 175 L-----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 175 l-----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
+ +...+..|..+++... ....+..+.+|+|+|.. ..+++++++ ||...+.++.| +.+
T Consensus 122 l~~~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~~~~~vI~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p-~~~ 191 (285)
T 3h4m_A 122 IAAKRTDALTGGDREVQRTLMQLLAEMD--------GFDARGDVKIIGATNRP-DILDPAILRPGRFDRIIEVPAP-DEK 191 (285)
T ss_dssp HHBCCSSSCCGGGGHHHHHHHHHHHHHH--------TTCSSSSEEEEEECSCG-GGBCHHHHSTTSEEEEEECCCC-CHH
T ss_pred hcccCccccCCccHHHHHHHHHHHHHhh--------CCCCCCCEEEEEeCCCc-hhcCHHHcCCCcCCeEEEECCC-CHH
Confidence 5 5667777777776410 01123468899999964 458999999 99888999888 566
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccC-HHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQID-HDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
.+..|+.... . ...+. +.....+...+. |. +.|.+..++..|...
T Consensus 192 ~r~~il~~~~---------------------------~----~~~~~~~~~~~~l~~~~~--g~-~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 192 GRLEILKIHT---------------------------R----KMNLAEDVNLEEIAKMTE--GC-VGAELKAICTEAGMN 237 (285)
T ss_dssp HHHHHHHHHH---------------------------T----TSCBCTTCCHHHHHHHCT--TC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------h----cCCCCCcCCHHHHHHHcC--CC-CHHHHHHHHHHHHHH
Confidence 6666655321 1 11111 111233333332 34 779999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 321 AALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 321 A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
|..++++.|+.+|+.+|+..++..+-
T Consensus 238 a~~~~~~~I~~~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 238 AIRELRDYVTMDDFRKAVEKIMEKKK 263 (285)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHhccCcCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999887543
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.3e-17 Score=154.02 Aligned_cols=225 Identities=19% Similarity=0.203 Sum_probs=139.3
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...|++|.|.+.+++.+...+.- +...++||+||||||||++|+++|+.+... |..+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-------~~~v~ 238 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-------FIRVN 238 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-------EEEEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eEEEe
Confidence 4556899999988887766554420 123349999999999999999999988421 10000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC-
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 175 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l- 175 (369)
.++ ++....+.....+...+ . ......|+|+|+||++.+
T Consensus 239 ------~~~-------------------l~~~~~Ge~e~~ir~lF-------------~--~A~~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 239 ------GSE-------------------FVHKYLGEGPRMVRDVF-------------R--LARENAPSIIFIDEVDSIA 278 (428)
T ss_dssp ------GGG-------------------TCCSSCSHHHHHHHHHH-------------H--HHHHTCSEEEEEECTHHHH
T ss_pred ------cch-------------------hhccccchhHHHHHHHH-------------H--HHHHcCCCeeechhhhhhh
Confidence 000 00000000000000000 0 011235889999999311
Q ss_pred ----------CH---HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCH
Q 017575 176 ----------DD---HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDA 240 (369)
Q Consensus 176 ----------~~---~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~ 240 (369)
+. .+.+.|+..|+.- ....++.+|+|+|- +..+++||++ ||+.+|.++.+++.
T Consensus 279 ~~R~~~~~~~~~~~~r~l~~lL~~ldg~-----------~~~~~v~vI~aTN~-~~~LD~AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 279 TKRFDAQTGSDREVQRILIELLTQMDGF-----------DQSTNVKVIMATNR-ADTLDPALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp CSCSSSCSCCCCHHHHHHHHHHHHHHHS-----------CSSCSEEEEEEESC-SSSCCHHHHSSSSEEEEEECCSSCCH
T ss_pred ccccCCCCCCChHHHHHHHHHHHHhhCC-----------CCCCCEEEEEecCC-hhhcChhhhcCCcceEEEEcCCCCCH
Confidence 11 2456666666641 11246789999994 4469999998 99998999754477
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAELNVDGLRGDIVSNRAAKA 319 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~s~R~~~~ll~~a~a 319 (369)
+.+..|+.... + ...+++++ +..|+..+ .|+ |.+.+..+++-|.-
T Consensus 347 ~~R~~Il~~~~---------------------------~----~~~l~~~~dl~~lA~~t--~G~-sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 347 RERRLIFGTIA---------------------------S----KMSLAPEADLDSLIIRN--DSL-SGAVIAAIMQEAGL 392 (428)
T ss_dssp HHHHHHHHHHH---------------------------H----SSCBCTTCCHHHHHHHT--TTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------------c----CCCCCcccCHHHHHHHC--CCC-CHHHHHHHHHHHHH
Confidence 77777765211 1 11222221 33343333 255 77899999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHhHHhccccc
Q 017575 320 LAALKGRDKVSAEDIATVMPNCLRHRLR 347 (369)
Q Consensus 320 ~A~l~~~~~v~~~~i~~a~~~vl~~r~~ 347 (369)
.|..+++..|+.+|+.+|+..+.....+
T Consensus 393 ~a~r~~~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 393 RAVRKNRYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHSCSCCC
T ss_pred HHHHCCCCCCCHHHHHHHHHHhhCccCC
Confidence 9999999999999999999877665443
No 15
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=2.9e-17 Score=155.46 Aligned_cols=143 Identities=21% Similarity=0.237 Sum_probs=106.2
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCC-CCCCCCHhHHhhhccceeecCCCCHHH
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNP-EEGELRPQLLDRFGMHAQVGTVRDAEL 242 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~-~~~~l~~al~~R~~~~i~~~~~~~~~~ 242 (369)
|+++||||++.++++.++.|+..+++....+. .+.....+.+|++++. .+..+++++++||.. +.++++ ..+.
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~-~~~e 263 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPY-SEKD 263 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCC-CHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCC-CHHH
Confidence 67999999999999999999999987432210 1111223444444321 234589999999987 889888 5566
Q ss_pred HHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH
Q 017575 243 RVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAA 322 (369)
Q Consensus 243 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~ 322 (369)
...|+..+. . ...+.++++++.+|..++.. | ++|.+.+++..|...|.
T Consensus 264 ~~~il~~~~-------------------------~----~~~~~~~~~~l~~l~~~~~~-G--~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 264 TKQILRIRC-------------------------E----EEDVEMSEDAYTVLTRIGLE-T--SLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHH-------------------------H----HTTCCBCHHHHHHHHHHHHH-S--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------H----HcCCCCCHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHHHH
Confidence 666655321 1 12467999999999999874 1 67999999999999999
Q ss_pred HcCCCCCCHHHHHHHHhHHhcc
Q 017575 323 LKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 323 l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.+++..|+.+|+++++..++..
T Consensus 312 ~~~~~~It~~~v~~a~~~~~~~ 333 (368)
T 3uk6_A 312 KRKGTEVQVDDIKRVYSLFLDE 333 (368)
T ss_dssp HTTCSSBCHHHHHHHHHHSBCH
T ss_pred HhCCCCCCHHHHHHHHHHhcCH
Confidence 9999999999999999976554
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.72 E-value=9.1e-18 Score=151.78 Aligned_cols=235 Identities=20% Similarity=0.214 Sum_probs=128.0
Q ss_pred CCCccccChHHHHHHhhhhhc--cCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVI--DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~--~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
.+|++++|++.....+...+. .....+++|+||||||||++|++++....... .++. ..++.........
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~----~~~~--~v~~~~~~~~~~~-- 74 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ----GPFI--SLNCAALNENLLD-- 74 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT----SCEE--EEEGGGSCHHHHH--
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC----CCeE--EEecCCCChhHHH--
Confidence 357788998877555432221 11234499999999999999999999875321 1110 0011111111000
Q ss_pred hccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcC
Q 017575 111 VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASG 190 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~ 190 (369)
..++|... ..+ .+......|.+..++++++||||++.++++.+..|+++|+++
T Consensus 75 ------------------------~~l~g~~~--~~~-~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~ 127 (265)
T 2bjv_A 75 ------------------------SELFGHEA--GAF-TGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 (265)
T ss_dssp ------------------------HHHHCCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHC
T ss_pred ------------------------HHhcCCcc--ccc-ccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhC
Confidence 01111100 000 111122457777778899999999999999999999999987
Q ss_pred CceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCH-HHHHHHHHHhhhccCCChHHHh
Q 017575 191 WNTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDA-ELRVKIVEERARFDKNPKEFRD 262 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~-~~~~~il~~~~~~~~~~~~~~~ 262 (369)
.+. +.|.....+.++.+|+|+|+.. +.++++|.+||.. .+.+++...+ +....++.
T Consensus 128 ~~~--~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~-------------- 191 (265)
T 2bjv_A 128 ELE--RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAE-------------- 191 (265)
T ss_dssp EEC--CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHH--------------
T ss_pred Cee--cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHH--------------
Confidence 542 2344444566789999999742 3478999999963 4566655432 22222211
Q ss_pred hhHHHHHHHHHHHHHHHhh-CCC--cccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHH
Q 017575 263 SYKAEQAKLQQQIASARSS-LPA--VQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDI 334 (369)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~-~~~--~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i 334 (369)
..+...... ... ..++++++..|..+.... +.|.+.+++..+...+ ....|+.+|+
T Consensus 192 ----------~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~g---n~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 192 ----------YFAIQMCREIKLPLFPGFTERARETLLNYRWPG---NIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp ----------HHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTT---HHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred ----------HHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 111111111 122 378999998887654221 3477777666655433 3445666655
No 17
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=2.2e-17 Score=152.32 Aligned_cols=246 Identities=17% Similarity=0.228 Sum_probs=146.6
Q ss_pred cccChHHHHHHhhhhhcc--------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 37 AIVGQEEMKLCLLLNVID--------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~--------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
.++|++.+++.+..++.. ....+++|+||||||||+++++++..+...-. .+ ++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~-------~i--~~~~~ 86 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI-------KV--EATKF 86 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE-------EE--EGGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------EE--cchhc
Confidence 478999998888776632 11334999999999999999999998742110 00 00000
Q ss_pred hhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhc-CCCeEEEeCCCCCCHHH--
Q 017575 103 GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA-NRGILYVDEVNLLDDHL-- 179 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a-~~~vl~lDE~~~l~~~~-- 179 (369)
... + .. +....... .. +. ...+|.+..+ .++++||||++.+++..
T Consensus 87 ~~~--~----------------~~----~~~~~~~~-----~~-~~----~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~ 134 (310)
T 1ofh_A 87 TEV--G----------------YV----GKEVDSII-----RD-LT----DSAGGAIDAVEQNGIVFIDEIDKICKKGEY 134 (310)
T ss_dssp SSC--C----------------SG----GGSTTHHH-----HH-HH----HTTTTCHHHHHHHCEEEEECGGGGSCCSSC
T ss_pred ccC--C----------------cc----CccHHHHH-----HH-HH----HHhhHHHhhccCCCEEEEEChhhcCccccc
Confidence 000 0 00 00000000 00 00 0012233332 36799999998887554
Q ss_pred ----------HHHHHHHHhcCCceeeecceeeeecCceEEEeecCCC---CCCCCHhHHhhhccceeecCCCCHHHHHHH
Q 017575 180 ----------VDVLLDSAASGWNTVEREGISISHPARFILIGSGNPE---EGELRPQLLDRFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 180 ----------~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~---~~~l~~al~~R~~~~i~~~~~~~~~~~~~i 246 (369)
++.|+++|+++.+... .. ......+.+|+++|+. +..+++++++||...+.+++++ .+....|
T Consensus 135 ~~~~~~~~~~~~~Ll~~le~~~~~~~--~~-~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~-~~~~~~i 210 (310)
T 1ofh_A 135 SGADVSREGVQRDLLPLVEGSTVSTK--HG-MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALS-AADFERI 210 (310)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCEEEET--TE-EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCC-HHHHHHH
T ss_pred cccchhHHHHHHHHHHHhcCCeEecc--cc-cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcC-HHHHHHH
Confidence 8999999997644332 11 2234567888886532 2358999999999779999884 5667677
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc----CCCCCchhHHHHHHHHHHHH
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL----NVDGLRGDIVSNRAAKALAA 322 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~----~~~s~R~~~~ll~~a~a~A~ 322 (369)
+..+... + +.............+.++++++++|...+... ..++.|.+.+++..+-..+.
T Consensus 211 l~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 211 LTEPHAS------L----------TEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp HHSSTTC------H----------HHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHH
T ss_pred HHhhHHH------H----------HHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhh
Confidence 6632110 0 11111111222334689999999999988652 11267999999888765444
Q ss_pred HcC-----CC-CCCHHHHHHHHhHHhc
Q 017575 323 LKG-----RD-KVSAEDIATVMPNCLR 343 (369)
Q Consensus 323 l~~-----~~-~v~~~~i~~a~~~vl~ 343 (369)
+.. .. .|+.+|+++++.....
T Consensus 275 ~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 275 FSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp HHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred cCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 322 11 4999999999876443
No 18
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.71 E-value=2.1e-16 Score=147.64 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=146.3
Q ss_pred CCCCccccChHHHHHHhhhhhccC-----CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDP-----KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~-----~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
+.+|+.++|++.+++.+...+... ...+++|+||||+||||+++++++.+...-.....++.
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~------------- 87 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL------------- 87 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC-------------
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh-------------
Confidence 348999999999999998887310 11349999999999999999999988321000000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
..... +...+ -....++|+|+||++.+.+.+++.|+..
T Consensus 88 -------------------------~~~~~------l~~~~-----------~~~~~~~v~~iDE~~~l~~~~~e~L~~~ 125 (334)
T 1in4_A 88 -------------------------VKQGD------MAAIL-----------TSLERGDVLFIDEIHRLNKAVEELLYSA 125 (334)
T ss_dssp -------------------------CSHHH------HHHHH-----------HHCCTTCEEEEETGGGCCHHHHHHHHHH
T ss_pred -------------------------cCHHH------HHHHH-----------HHccCCCEEEEcchhhcCHHHHHHHHHH
Confidence 00000 00000 0012356999999999999889999888
Q ss_pred HhcCCcee--ee--cceeee-ecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 187 AASGWNTV--ER--EGISIS-HPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 187 l~~~~~~~--~~--~~~~~~-~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
++.....+ .. ....+. ....+.++++++. ...+++++++||.+.+.++++ ..+....|+...
T Consensus 126 ~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~-~~~Ls~~l~sR~~l~~~Ld~~-~~~~l~~iL~~~----------- 192 (334)
T 1in4_A 126 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR-SGLLSSPLRSRFGIILELDFY-TVKELKEIIKRA----------- 192 (334)
T ss_dssp HHTSCCCC---------------CCCEEEEEESC-GGGSCHHHHTTCSEEEECCCC-CHHHHHHHHHHH-----------
T ss_pred HHhcccceeeccCcccccccccCCCeEEEEecCC-cccCCHHHHHhcCceeeCCCC-CHHHHHHHHHHH-----------
Confidence 87653221 00 011111 1134677777764 356999999999877888888 556666665532
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPNC 341 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~v 341 (369)
... ..+.+++++...|+..+. . ++|.+.++++.+...|...+...|+.+++++++...
T Consensus 193 --------------~~~----~~~~~~~~~~~~ia~~~~---G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 193 --------------ASL----MDVEIEDAAAEMIAKRSR---G-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp --------------HHH----TTCCBCHHHHHHHHHTST---T-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred --------------HHH----cCCCcCHHHHHHHHHhcC---C-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 111 246788888777765443 2 789999999999999999998899999999999875
Q ss_pred h
Q 017575 342 L 342 (369)
Q Consensus 342 l 342 (369)
-
T Consensus 251 ~ 251 (334)
T 1in4_A 251 N 251 (334)
T ss_dssp T
T ss_pred C
Confidence 3
No 19
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.71 E-value=2.2e-17 Score=152.17 Aligned_cols=233 Identities=18% Similarity=0.175 Sum_probs=137.3
Q ss_pred cccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCC---CCCCCcchhhhhhhhhhh
Q 017575 37 AIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYN---SDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 111 (369)
.++|+......+...+.. ....+++|+||||||||++|++++...+.. +.++. +.......+.+++++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~----~~~~v~v~~~~~~~~l~~~~lfg--- 75 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS----DRPLVTLNCAALNESLLESELFG--- 75 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS----SSCCCEEECSSCCHHHHHHHHTC---
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc----CCCeEEEeCCCCChHHHHHHhcC---
Confidence 477877665544333211 123349999999999999999999977432 12221 111111112222221
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
... .. ..|......|.+..++++++||||++.++...|..|+.+|+++.
T Consensus 76 ----------------------------~~~--g~-~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~ 124 (304)
T 1ojl_A 76 ----------------------------HEK--GA-FTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQERE 124 (304)
T ss_dssp ----------------------------CCS--SC-CC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSB
T ss_pred ----------------------------ccc--cc-cCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCE
Confidence 100 00 01111224577777889999999999999999999999999876
Q ss_pred ceeeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 192 NTVEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
+. +.|.....+.++.+|+++|... +.++++|.+||.. .+.+++. ++...+|...
T Consensus 125 ~~--~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL--~eR~edi~~l--------------- 185 (304)
T 1ojl_A 125 VQ--RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSL--RQRREDIPLL--------------- 185 (304)
T ss_dssp CC--BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCS--GGGGGGHHHH---------------
T ss_pred ee--ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCH--HHhHhhHHHH---------------
Confidence 53 3355566677899999999642 3478999999964 3445444 3222222110
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIAT 336 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~ 336 (369)
......++... .......++++++..|..+.... ..|.+.+++..+... .....|+.+|+..
T Consensus 186 ---~~~~l~~~~~~-~~~~~~~~s~~a~~~L~~~~wpG---nvReL~~~l~~~~~~---~~~~~i~~~~l~~ 247 (304)
T 1ojl_A 186 ---ADHFLRRFAER-NRKVVKGFTPQAMDLLIHYDWPG---NIRELENAIERAVVL---LTGEYISERELPL 247 (304)
T ss_dssp ---HHHHHHHHHHH-TTCCCCCBCHHHHHHHHHCCCSS---HHHHHHHHHHHHHHH---CCSSSBCGGGSCG
T ss_pred ---HHHHHHHHHHH-hccCccCCCHHHHHHHHcCCCCC---CHHHHHHHHHHHHHh---CCCCcccHHhhhh
Confidence 00011111111 11234678999998888765321 347777777665543 3456788887753
No 20
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=6.6e-17 Score=153.62 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=101.8
Q ss_pred chhhhcCCCeEEEeCCCCCCHH--------------HHHHHHHHHhcCCceeeecceeeeec--------CceEEEeecC
Q 017575 157 GLLAKANRGILYVDEVNLLDDH--------------LVDVLLDSAASGWNTVEREGISISHP--------ARFILIGSGN 214 (369)
Q Consensus 157 g~~~~a~~~vl~lDE~~~l~~~--------------~~~~L~~~l~~~~~~~~~~~~~~~~~--------~~~~li~t~n 214 (369)
+.+..+.++++||||++.++.. +++.|+.+|+++.+.+.+.+.....+ .++.+|+++|
T Consensus 131 ~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~ 210 (376)
T 1um8_A 131 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA 210 (376)
T ss_dssp TCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC
T ss_pred chhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC
Confidence 4445567899999999999887 99999999998765544333332222 3445666655
Q ss_pred CC----------------------------------------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhcc
Q 017575 215 PE----------------------------------------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFD 254 (369)
Q Consensus 215 ~~----------------------------------------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~ 254 (369)
.. ...+.++|++||+..+.++++ ..+....|+.....
T Consensus 211 ~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l-~~~~l~~i~~~~~~-- 287 (376)
T 1um8_A 211 FDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI-SLEAMVDILQKPKN-- 287 (376)
T ss_dssp CTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC-CHHHHHHHHHSSTT--
T ss_pred HHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCC-CHHHHHHHHhhhHH--
Confidence 21 113678999999877888877 45555566542100
Q ss_pred CCChHHHhhhHHHHHHHHHHHH-HHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCC------C
Q 017575 255 KNPKEFRDSYKAEQAKLQQQIA-SARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGR------D 327 (369)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~------~ 327 (369)
. +..++. ........+.++++++++|...+..... +.|.+.+++..+...+..+.. -
T Consensus 288 --------------~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~R~L~~~le~~~~~~~~~~~~~~~~~~ 351 (376)
T 1um8_A 288 --------------A-LIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-GARGLRAIIEDFCLDIMFDLPKLKGSEV 351 (376)
T ss_dssp --------------C-HHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC-TGGGHHHHHHHHHHHHHHTGGGGTTSEE
T ss_pred --------------H-HHHHHHHHHhhcCceEEECHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 0 111111 1122234578999999999998775333 569999998887766555322 1
Q ss_pred CCCHHHHHHHHhHHhcc
Q 017575 328 KVSAEDIATVMPNCLRH 344 (369)
Q Consensus 328 ~v~~~~i~~a~~~vl~~ 344 (369)
.|+.+++..+..-++..
T Consensus 352 ~i~~~~v~~~~~~~~~~ 368 (376)
T 1um8_A 352 RITKDCVLKQAEPLIIA 368 (376)
T ss_dssp EECHHHHTTSSCCEEEC
T ss_pred EEeHHHhcCCCCceeec
Confidence 58899888766554443
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=2.2e-16 Score=146.66 Aligned_cols=222 Identities=19% Similarity=0.253 Sum_probs=147.0
Q ss_pred CCCCCccccChHHHHHHhhhhhcc-----CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVID-----PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~-----~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
.+..|.+++|++.++..+...+.. ....+++|+||+|||||++|++++..+...-.. .++...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~--~~~~~~---------- 74 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV--TSGPAI---------- 74 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEE--ECTTTC----------
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEE--Eecccc----------
Confidence 344789999999887766555421 112349999999999999999999877311000 000000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
.....+.+. +.. ..++++++||||++.++...+..|+.
T Consensus 75 --------------------------~~~~~l~~~------l~~----------~~~~~~~l~lDEi~~l~~~~~~~L~~ 112 (324)
T 1hqc_A 75 --------------------------EKPGDLAAI------LAN----------SLEEGDILFIDEIHRLSRQAEEHLYP 112 (324)
T ss_dssp --------------------------CSHHHHHHH------HTT----------TCCTTCEEEETTTTSCCHHHHHHHHH
T ss_pred --------------------------CChHHHHHH------HHH----------hccCCCEEEEECCcccccchHHHHHH
Confidence 000011100 000 12467899999999999999999999
Q ss_pred HHhcCCceeeecc----eeee-ecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHH
Q 017575 186 SAASGWNTVEREG----ISIS-HPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEF 260 (369)
Q Consensus 186 ~l~~~~~~~~~~~----~~~~-~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~ 260 (369)
.++++.+.+.-.. ..+. ...++.+|+++|.. ..+++++.+||...+.+++|+ .+....++...
T Consensus 113 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-~~~~~~l~~R~~~~i~l~~~~-~~e~~~~l~~~---------- 180 (324)
T 1hqc_A 113 AMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-GLITAPLLSRFGIVEHLEYYT-PEELAQGVMRD---------- 180 (324)
T ss_dssp HHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC-SSCSCSTTTTCSCEEECCCCC-HHHHHHHHHHH----------
T ss_pred HHHhhhhHHhccccccccccccCCCCEEEEEeCCCc-ccCCHHHHhcccEEEecCCCC-HHHHHHHHHHH----------
Confidence 9998754432100 1111 22468899999954 468899999997668998885 44444443311
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Q 017575 261 RDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMPN 340 (369)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~ 340 (369)
.....+.+++++...|..++. | .+|.+.+++..+...|...+.+.|+.+++..++..
T Consensus 181 -------------------~~~~~~~~~~~~~~~l~~~~~--G--~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 181 -------------------ARLLGVRITEEAALEIGRRSR--G--TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp -------------------HHTTTCCCCHHHHHHHHHHSC--S--CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred -------------------HHhcCCCCCHHHHHHHHHHcc--C--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 111246788999888877752 2 57999999998888888888889999999988875
Q ss_pred H
Q 017575 341 C 341 (369)
Q Consensus 341 v 341 (369)
.
T Consensus 238 ~ 238 (324)
T 1hqc_A 238 L 238 (324)
T ss_dssp H
T ss_pred h
Confidence 4
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.70 E-value=7.4e-17 Score=156.02 Aligned_cols=214 Identities=15% Similarity=0.204 Sum_probs=134.5
Q ss_pred CCCccccChHHHH---HHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhh
Q 017575 33 YPFTAIVGQEEMK---LCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 33 ~~~~~i~G~~~~~---~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
.+|++++||+.++ ..+...+......+++|+||||||||+++++++..+...-. .++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a~~------------- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE----RISAVT------------- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEETTT-------------
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEecc-------------
Confidence 4789999999987 66666663222234999999999999999999998842210 000000
Q ss_pred hhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 110 VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.....+. ..+... ......++++++||||+++++...++.|+..|++
T Consensus 86 ----------------------~~~~~ir------~~~~~a-----~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~ 132 (447)
T 3pvs_A 86 ----------------------SGVKEIR------EAIERA-----RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132 (447)
T ss_dssp ----------------------CCHHHHH------HHHHHH-----HHHHHTTCCEEEEEETTTCC------CCHHHHHT
T ss_pred ----------------------CCHHHHH------HHHHHH-----HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc
Confidence 0000000 000000 0001134578999999999999999999999997
Q ss_pred CCceeeecceeeeecCceEEEeecC-CCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHH
Q 017575 190 GWNTVEREGISISHPARFILIGSGN-PEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQ 268 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~t~n-~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 268 (369)
+. +.+|++++ .....+.++|++||.+ +.+.+++ .+....++....
T Consensus 133 ~~---------------v~lI~att~n~~~~l~~aL~sR~~v-~~l~~l~-~edi~~il~~~l----------------- 178 (447)
T 3pvs_A 133 GT---------------ITFIGATTENPSFELNSALLSRARV-YLLKSLS-TEDIEQVLTQAM----------------- 178 (447)
T ss_dssp TS---------------CEEEEEESSCGGGSSCHHHHTTEEE-EECCCCC-HHHHHHHHHHHH-----------------
T ss_pred Cc---------------eEEEecCCCCcccccCHHHhCceeE-EeeCCcC-HHHHHHHHHHHH-----------------
Confidence 53 33455543 2234689999999986 8888884 555555544321
Q ss_pred HHHHHHHHHHHhh--CCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHc--CCCCCCHHHHHHHHhHH
Q 017575 269 AKLQQQIASARSS--LPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALK--GRDKVSAEDIATVMPNC 341 (369)
Q Consensus 269 ~~~~~~i~~~~~~--~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~--~~~~v~~~~i~~a~~~v 341 (369)
...... ...+.+++++++.|..++. . +.|.+.+++..+...+... +...|+.+++.+++...
T Consensus 179 -------~~~~~~~~~~~~~i~~~al~~L~~~~~---G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 179 -------EDKTRGYGGQDIVLPDETRRAIAELVN---G-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp -------HCTTTSSTTSSEECCHHHHHHHHHHHC---S-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred -------HHHhhhhccccCcCCHHHHHHHHHHCC---C-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 110111 1457899999999998852 2 6799999999888776544 45679999999988743
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.69 E-value=7e-17 Score=150.21 Aligned_cols=203 Identities=17% Similarity=0.197 Sum_probs=124.6
Q ss_pred CCCCCCccccChHHHHHHhhhhhc------------cCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI------------DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~------------~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.|...|++++|++.+++.+...+. .....+++|+||||||||++|++++..+... +..+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-------~~~v-- 82 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-------FFSV-- 82 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-------EEEE--
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-------EEEE--
Confidence 455689999999999888766551 0012349999999999999999999887421 1000
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~ 177 (369)
++ .++...+ .+.....+... -......+++++||||++.+.+
T Consensus 83 ~~----~~l~~~~-------------------~g~~~~~~~~~---------------f~~a~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 83 SS----SDLVSKW-------------------MGESEKLVKQL---------------FAMARENKPSIIFIDQVDALTG 124 (322)
T ss_dssp EH----HHHHTTT-------------------GGGHHHHHHHH---------------HHHHHHTSSEEEEEECGGGGSC
T ss_pred ch----HHHhhcc-------------------cchHHHHHHHH---------------HHHHHhcCCeEEEechhhhhhc
Confidence 00 0000000 00000000000 0111223578999999976643
Q ss_pred -----------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHH
Q 017575 178 -----------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 178 -----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~i 246 (369)
..++.|+..|+... .....+.+|+|+|.. ..+++++++||...+.++.| +.+.+..|
T Consensus 125 ~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~-~~ld~al~~Rf~~~i~~~~p-~~~~r~~i 192 (322)
T 3eie_A 125 TRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIP-WQLDSAIRRRFERRIYIPLP-DLAARTTM 192 (322)
T ss_dssp C------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCG-GGSCHHHHHHCCEEEECCCC-CHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCCh-hhCCHHHHcccCeEEEeCCC-CHHHHHHH
Confidence 45777888776411 123468899999953 45999999999988888888 56667666
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL 323 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l 323 (369)
+... .......+++..+..|+..+. |. +.+.+..+++.|...|..
T Consensus 193 l~~~-----------------------------~~~~~~~~~~~~l~~la~~t~--g~-sg~di~~l~~~a~~~a~r 237 (322)
T 3eie_A 193 FEIN-----------------------------VGDTPCVLTKEDYRTLGAMTE--GY-SGSDIAVVVKDALMQPIR 237 (322)
T ss_dssp HHHH-----------------------------HTTCCCCCCHHHHHHHHHTTT--TC-CHHHHHHHHHHHTTHHHH
T ss_pred HHHH-----------------------------hccCCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 5532 112234567777766666553 44 668888888877655543
No 24
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.69 E-value=2.5e-16 Score=153.31 Aligned_cols=135 Identities=21% Similarity=0.306 Sum_probs=104.9
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEee---------cC--CCCCCCCHhHHhhhccce
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGS---------GN--PEEGELRPQLLDRFGMHA 232 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t---------~n--~~~~~l~~al~~R~~~~i 232 (369)
++|+||||+++++.+.++.|++.|++. +.++++++| ++ ..+..+++.+++||.. +
T Consensus 296 ~~VliIDEa~~l~~~a~~aLlk~lEe~-------------~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~ 361 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIECFTYLHRALESS-------------IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI-I 361 (456)
T ss_dssp ECEEEEESGGGCBHHHHHHHHHHTTST-------------TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE-E
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhcc-------------CCCEEEEecCCccccccccccccccccCChhHHhhcce-e
Confidence 479999999999999999999999873 223333344 33 1134689999999987 7
Q ss_pred eecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHH
Q 017575 233 QVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIV 312 (369)
Q Consensus 233 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ 312 (369)
.++++ +.++...++..+. .. ..+.++++++.+|..++.. | ++|.+..
T Consensus 362 ~~~~~-~~~e~~~iL~~~~-------------------------~~----~~~~~~~~~~~~i~~~a~~-g--~~r~a~~ 408 (456)
T 2c9o_A 362 RTMLY-TPQEMKQIIKIRA-------------------------QT----EGINISEEALNHLGEIGTK-T--TLRYSVQ 408 (456)
T ss_dssp ECCCC-CHHHHHHHHHHHH-------------------------HH----HTCCBCHHHHHHHHHHHHH-S--CHHHHHH
T ss_pred eCCCC-CHHHHHHHHHHHH-------------------------HH----hCCCCCHHHHHHHHHHccC-C--CHHHHHH
Confidence 87777 5666667765331 11 1367999999999998843 2 6899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHhHHhccc
Q 017575 313 SNRAAKALAALKGRDKVSAEDIATVMPNCLRHR 345 (369)
Q Consensus 313 ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl~~r 345 (369)
+++.|...|..+|++.|+.+||+.++.+++..+
T Consensus 409 ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~ 441 (456)
T 2c9o_A 409 LLTPANLLAKINGKDSIEKEHVEEISELFYDAK 441 (456)
T ss_dssp THHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHhhcCCCccCHHHHHHHHHHhcChH
Confidence 999999999999999999999999999876543
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=6.7e-16 Score=141.73 Aligned_cols=223 Identities=17% Similarity=0.186 Sum_probs=135.0
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.+...|++++|++.+++.+...+.. ....+++|+||||||||++++++++.+...-.. ..+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~--i~~~~--- 89 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN--ISAAS--- 89 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE--EESTT---
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE--eeHHH---
Confidence 3556899999999988877655421 112349999999999999999999987421100 00000
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC--
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 175 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l-- 175 (369)
+. ............ . ........+++++||||++.+
T Consensus 90 --------l~-------------------~~~~~~~~~~~~----------~-----~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 90 --------LT-------------------SKYVGDGEKLVR----------A-----LFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp --------TS-------------------SSSCSCHHHHHH----------H-----HHHHHHHTCSEEEEEETGGGTSB
T ss_pred --------Hh-------------------hcccchHHHHHH----------H-----HHHHHHHcCCcEEEeccHHHhcc
Confidence 00 000000000000 0 001122346789999999665
Q ss_pred ---------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHH
Q 017575 176 ---------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 176 ---------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~i 246 (369)
....++.|+..++..... .....+.+|+++|.. ..+++++++||...+.++.| ..+.+..|
T Consensus 128 ~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~-~~l~~~l~~R~~~~i~~~~p-~~~~r~~i 197 (297)
T 3b9p_A 128 ERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRP-QELDEAALRRFTKRVYVSLP-DEQTRELL 197 (297)
T ss_dssp CC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCG-GGBCHHHHHHCCEEEECCCC-CHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCCh-hhCCHHHHhhCCeEEEeCCc-CHHHHHHH
Confidence 345667788777752111 112357888999843 46899999999887888877 55666666
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcC-
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKG- 325 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~- 325 (369)
+.... . .....++++.+..|...+. |. +.+.+..+++.|...|..+.
T Consensus 198 l~~~~---------------------------~--~~~~~~~~~~~~~la~~~~--g~-~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 198 LNRLL---------------------------Q--KQGSPLDTEALRRLAKITD--GY-SGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp HHHHH---------------------------G--GGSCCSCHHHHHHHHHHTT--TC-CHHHHHHHHHHHTTHHHHTCC
T ss_pred HHHHH---------------------------H--hcCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHHHh
Confidence 44221 1 1124567777777776653 44 55677788887766665443
Q ss_pred -----------CCCCCHHHHHHHHhHH
Q 017575 326 -----------RDKVSAEDIATVMPNC 341 (369)
Q Consensus 326 -----------~~~v~~~~i~~a~~~v 341 (369)
...|+.+|+..|+..+
T Consensus 246 ~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 246 VEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSC
T ss_pred hhhcccccccccCCcCHHHHHHHHHHc
Confidence 3579999999988754
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.68 E-value=5.1e-16 Score=148.12 Aligned_cols=221 Identities=16% Similarity=0.197 Sum_probs=135.0
Q ss_pred CCCCCccccChHHHHHHhhhhhcc------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVID------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPED 98 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 98 (369)
+...|++++|++.++..+...+.. ....++||+||||||||++|++++..+... +..+ +
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~-------~~~v--~ 180 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT-------FFNI--S 180 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE-------EEEE--C
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc-------EEEe--e
Confidence 444799999999988877665511 112359999999999999999999887421 1000 0
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC---
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL--- 175 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l--- 175 (369)
+..+..... +.....+... ........+++|||||++.+
T Consensus 181 ~~~l~~~~~-----------------------g~~~~~~~~~---------------~~~a~~~~~~il~iDEid~l~~~ 222 (389)
T 3vfd_A 181 AASLTSKYV-----------------------GEGEKLVRAL---------------FAVARELQPSIIFIDQVDSLLCE 222 (389)
T ss_dssp SCCC------------------------------CHHHHHHH---------------HHHHHHSSSEEEEEETGGGGC--
T ss_pred HHHhhcccc-----------------------chHHHHHHHH---------------HHHHHhcCCeEEEEECchhhccc
Confidence 000000000 0000000000 00111235689999999776
Q ss_pred --------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHH
Q 017575 176 --------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIV 247 (369)
Q Consensus 176 --------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il 247 (369)
....+..|+..|+.. ....+..+++|+|+|.. ..+++++++||...+.++.| ..+.+..|+
T Consensus 223 ~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vI~atn~~-~~l~~~l~~R~~~~i~i~~p-~~~~r~~il 291 (389)
T 3vfd_A 223 RREGEHDASRRLKTEFLIEFDGV---------QSAGDDRVLVMGATNRP-QELDEAVLRRFIKRVYVSLP-NEETRLLLL 291 (389)
T ss_dssp ------CTHHHHHHHHHHHHHHH---------C-----CEEEEEEESCG-GGCCHHHHTTCCEEEECCCC-CHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHhhcc---------cccCCCCEEEEEecCCc-hhcCHHHHcCcceEEEcCCc-CHHHHHHHH
Confidence 445677777777631 11123578999999963 46999999999877888888 456565664
Q ss_pred HHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHc---
Q 017575 248 EERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALK--- 324 (369)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~--- 324 (369)
... .......++++.+..|...+. |. +.+.+..++..|...+..+
T Consensus 292 ~~~-----------------------------~~~~~~~l~~~~~~~la~~~~--g~-~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 292 KNL-----------------------------LCKQGSPLTQKELAQLARMTD--GY-SGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp HHH-----------------------------HTTSCCCSCHHHHHHHHHHTT--TC-CHHHHHHHHHHHTTHHHHTSCC
T ss_pred HHH-----------------------------HHhcCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHhhhh
Confidence 421 112245677877776666654 33 5567777777776666544
Q ss_pred ---------CCCCCCHHHHHHHHhHH
Q 017575 325 ---------GRDKVSAEDIATVMPNC 341 (369)
Q Consensus 325 ---------~~~~v~~~~i~~a~~~v 341 (369)
+...|+.+|+..++..+
T Consensus 340 ~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 340 EQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp C---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhccchhhcCCcCHHHHHHHHHHc
Confidence 34578999999998754
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.68 E-value=1.2e-15 Score=143.83 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=135.9
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.+...|++++|++.+++.+...+.. ....+++|+||||||||++|++++..+... +..+
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-------~~~i-- 148 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT-------FFSI-- 148 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE-------EEEE--
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe-------EEEE--
Confidence 3556899999999988877655421 122349999999999999999999887321 1000
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC-
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~- 176 (369)
++ .++.. ...+.....+ .. .........++++||||++.+.
T Consensus 149 ~~----~~l~~-------------------~~~g~~~~~~----------~~-----~~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 149 SA----SSLTS-------------------KWVGEGEKMV----------RA-----LFAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp EG----GGGCC-------------------SSTTHHHHHH----------HH-----HHHHHHHTCSEEEEEETHHHHTB
T ss_pred eh----HHhhc-------------------cccchHHHHH----------HH-----HHHHHHhcCCeEEEEeCchhhhc
Confidence 00 00000 0000000000 00 0011122457899999996552
Q ss_pred ----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHH
Q 017575 177 ----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 177 ----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~i 246 (369)
...++.|+..|+.. ....+..+.+|+|+|.. ..+++++++||...+.++.| ..+.+..+
T Consensus 191 ~~~~~~~~~~~~~~~~lL~~l~~~---------~~~~~~~v~vI~atn~~-~~l~~~l~~Rf~~~i~i~~p-~~~~r~~i 259 (357)
T 3d8b_A 191 QRGDGEHESSRRIKTEFLVQLDGA---------TTSSEDRILVVGATNRP-QEIDEAARRRLVKRLYIPLP-EASARKQI 259 (357)
T ss_dssp C------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCG-GGBCHHHHTTCCEEEECCCC-CHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHhcc---------cccCCCCEEEEEecCCh-hhCCHHHHhhCceEEEeCCc-CHHHHHHH
Confidence 24566777777642 11223578899999963 45899999999987888888 45556555
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH---
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAAL--- 323 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l--- 323 (369)
+... .......++++.+..|...+. |. +.+.+..+++.|...+..
T Consensus 260 l~~~-----------------------------~~~~~~~l~~~~l~~la~~t~--G~-s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 260 VINL-----------------------------MSKEQCCLSEEEIEQIVQQSD--AF-SGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp HHHH-----------------------------HHTSCBCCCHHHHHHHHHHTT--TC-CHHHHHHHHHHHHTHHHHHCC
T ss_pred HHHH-----------------------------HhhcCCCccHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHHhh
Confidence 4421 111235577777776666553 44 567777777776554443
Q ss_pred ---------cCCCCCCHHHHHHHHhHHhcc
Q 017575 324 ---------KGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 324 ---------~~~~~v~~~~i~~a~~~vl~~ 344 (369)
.....|+.+|+..|+..+-.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGG
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence 233579999999999877654
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.67 E-value=6.6e-16 Score=145.45 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=124.8
Q ss_pred CCCCCCCccccChHHHHHHhhhhhcc------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVID------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
..+...|++++|++.+++.+...+.. ....+++|+||||||||++|++++..+... +..+
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-------~~~v- 115 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-------FFSV- 115 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-------EEEE-
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-------EEEe-
Confidence 34556899999999888877665521 012349999999999999999999987421 1000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
...++... ..+.....+... ........++|+||||++.+.
T Consensus 116 -----~~~~l~~~-------------------~~g~~~~~~~~~---------------f~~a~~~~~~vl~iDEid~l~ 156 (355)
T 2qp9_X 116 -----SSSDLVSK-------------------WMGESEKLVKQL---------------FAMARENKPSIIFIDQVDALT 156 (355)
T ss_dssp -----EHHHHHSC-------------------C---CHHHHHHH---------------HHHHHHTSSEEEEEECGGGGT
T ss_pred -----eHHHHhhh-------------------hcchHHHHHHHH---------------HHHHHHcCCeEEEEechHhhc
Confidence 00000000 000000000000 001112367899999998775
Q ss_pred H-----------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHH
Q 017575 177 D-----------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVK 245 (369)
Q Consensus 177 ~-----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~ 245 (369)
+ .+++.|+..|+... ..+..+.+|+++|.. ..+++++++||+..+.++.| +.+.+..
T Consensus 157 ~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P-~~~~r~~ 224 (355)
T 2qp9_X 157 GTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIP-WQLDSAIRRRFERRIYIPLP-DLAARTT 224 (355)
T ss_dssp C------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCG-GGSCHHHHHTCCEEEECCCC-CHHHHHH
T ss_pred ccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCc-ccCCHHHHcccCEEEEeCCc-CHHHHHH
Confidence 3 35677777776411 113468899999954 46999999999888888888 5666666
Q ss_pred HHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHc
Q 017575 246 IVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 246 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 324 (369)
|+... .......+++..+..|+..+. |. +.|.+..+++.|...|..+
T Consensus 225 il~~~-----------------------------l~~~~~~~~~~~l~~la~~t~--G~-sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 225 MFEIN-----------------------------VGDTPSVLTKEDYRTLGAMTE--GY-SGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp HHHHH-----------------------------HTTSCBCCCHHHHHHHHHHTT--TC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------------------------HhhCCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHH
Confidence 65522 111123467777777776654 44 6788888888887776643
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=5.2e-15 Score=137.45 Aligned_cols=203 Identities=17% Similarity=0.167 Sum_probs=121.7
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.|...|++++|.+.+++.+...+.. ....+++|+||||||||++|++++..+...... ......
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~-~i~~~~--- 81 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF-SISSSD--- 81 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE-EEECCS---
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEE-EEEhHH---
Confidence 3556899999999988877655420 012349999999999999999999987322110 000000
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC-
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~- 176 (369)
+.....+.....+... -.......++++||||++.+.
T Consensus 82 ---------------------------l~~~~~g~~~~~~~~l---------------f~~a~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 82 ---------------------------LVSKWLGESEKLVKNL---------------FQLARENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp ---------------------------SCCSSCCSCHHHHHHH---------------HHHHHHTSSEEEEEETTTGGGC
T ss_pred ---------------------------HHhhhhhHHHHHHHHH---------------HHHHHhcCCcEEEeecHHHhcc
Confidence 0000000000000000 001122457899999997762
Q ss_pred ----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHH
Q 017575 177 ----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 177 ----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~i 246 (369)
....+.|+..|+... ..+..+.+|+|+|.. ..+++++++||+..+.++.| +.+.+..|
T Consensus 120 ~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P-~~~~r~~i 187 (322)
T 1xwi_A 120 SRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIP-WVLDSAIRRRFEKRIYIPLP-EPHARAAM 187 (322)
T ss_dssp CSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCT-TTSCHHHHHTCCEEEECCCC-CHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCc-ccCCHHHHhhcCeEEEeCCc-CHHHHHHH
Confidence 245667777776421 113568899999954 46999999999988889888 56667666
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAA 322 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~ 322 (369)
+... .......+++..+..|+..+. |. |.+.+..+++.|...|.
T Consensus 188 l~~~-----------------------------l~~~~~~l~~~~l~~la~~t~--G~-sgadl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 188 FKLH-----------------------------LGTTQNSLTEADFRELGRKTD--GY-SGADISIIVRDALMQPV 231 (322)
T ss_dssp HHHH-----------------------------HTTCCBCCCHHHHHHHHHTCT--TC-CHHHHHHHHHHHHTHHH
T ss_pred HHHH-----------------------------HhcCCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHH
Confidence 5522 111123456666666655443 44 66778888777765544
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=5.3e-16 Score=145.68 Aligned_cols=226 Identities=14% Similarity=0.121 Sum_probs=140.8
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcce----eecCCCCCCCCCCcc
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK----VVVGDPYNSDPEDPE 100 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~----~~~~~~~~~~~~~~~ 100 (369)
...+.+|. .|.+++|++.+++.+...+.....++++|+||||+|||++++++++.+.... .....+.... ....
T Consensus 27 ~~~k~~p~-~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~ 104 (353)
T 1sxj_D 27 WVEKYRPK-NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE-RGIS 104 (353)
T ss_dssp HHHHTCCS-STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC-CCHH
T ss_pred HHHhcCCC-CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc-cchH
Confidence 33444444 7999999999999998888432224599999999999999999999874210 0000000000 0000
Q ss_pred hhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcc----cccccchhhhcCCCeEEEeCCCCCC
Q 017575 101 AMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGV----KAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
.+...+. .+.... .....+.....++.++|+||++.++
T Consensus 105 ~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~ 146 (353)
T 1sxj_D 105 IVREKVK--------------------------------------NFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146 (353)
T ss_dssp HHTTHHH--------------------------------------HHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC
T ss_pred HHHHHHH--------------------------------------HHhhhcccccchhhcccCCCCCceEEEEECCCccC
Confidence 0000000 000000 0000001112345699999999999
Q ss_pred HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCC
Q 017575 177 DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKN 256 (369)
Q Consensus 177 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~ 256 (369)
+..++.|++.|++.. ....+|+++|.. ..+.+++.+||. .+.+.+++ .+....++...
T Consensus 147 ~~~~~~Ll~~le~~~-------------~~~~~il~~~~~-~~l~~~l~sR~~-~i~~~~~~-~~~~~~~l~~~------ 204 (353)
T 1sxj_D 147 ADAQSALRRTMETYS-------------GVTRFCLICNYV-TRIIDPLASQCS-KFRFKALD-ASNAIDRLRFI------ 204 (353)
T ss_dssp HHHHHHHHHHHHHTT-------------TTEEEEEEESCG-GGSCHHHHHHSE-EEECCCCC-HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcC-------------CCceEEEEeCch-hhCcchhhccCc-eEEeCCCC-HHHHHHHHHHH------
Confidence 999999999998731 234455566633 358999999997 48888874 44444443311
Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCC-CCCHHHHH
Q 017575 257 PKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRD-KVSAEDIA 335 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~-~v~~~~i~ 335 (369)
.....+.++++++.+|.+++. | ++|.+.+++..+...+.-.+.. .|+.+|+.
T Consensus 205 -----------------------~~~~~~~i~~~~l~~l~~~~~--G--~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~ 257 (353)
T 1sxj_D 205 -----------------------SEQENVKCDDGVLERILDISA--G--DLRRGITLLQSASKGAQYLGDGKNITSTQVE 257 (353)
T ss_dssp -----------------------HHTTTCCCCHHHHHHHHHHTS--S--CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHH
T ss_pred -----------------------HHHhCCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHHHHhcCCCccCccccHHHHH
Confidence 112356799999998888764 2 6799888888877766544433 79999999
Q ss_pred HHHh
Q 017575 336 TVMP 339 (369)
Q Consensus 336 ~a~~ 339 (369)
+++.
T Consensus 258 ~~~~ 261 (353)
T 1sxj_D 258 ELAG 261 (353)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8876
No 31
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=5.1e-16 Score=143.32 Aligned_cols=224 Identities=15% Similarity=0.159 Sum_probs=132.9
Q ss_pred cccChHHHHHHhhhhhccCC---------CCeeEEecCCCCChhHHHHHHHhccCccee-ecCCCCCCCCCCcchhhhhh
Q 017575 37 AIVGQEEMKLCLLLNVIDPK---------IGGVMIMGDRGTGKSTTVRSLVDLLPVIKV-VVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~---------~g~vlL~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 106 (369)
.++|++.+++.+...+.... .++++|+||||||||++|+++++.+..... +...++.. ........
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~--~~~~~~~~-- 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE--YMEKHAVS-- 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG--CCSTTHHH--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc--ccccccHH--
Confidence 46799999888877764211 134999999999999999999998853210 00000000 00000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcc-cccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGV-KAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
.++|.... ..+.. .....+.+..+.++++||||++.+++..++.|++
T Consensus 94 -----------------------------~l~g~~~~---~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~ 141 (311)
T 4fcw_A 94 -----------------------------RLIGAPPG---YVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQ 141 (311)
T ss_dssp -----------------------------HHHCCCTT---STTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHH
T ss_pred -----------------------------HhcCCCCc---cccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHH
Confidence 11110000 00000 0001122333456899999999999999999999
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCC-------------------------CCCCCHhHHhhhccceeecCCCCH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPE-------------------------EGELRPQLLDRFGMHAQVGTVRDA 240 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~-------------------------~~~l~~al~~R~~~~i~~~~~~~~ 240 (369)
+|+++.+... .+..+.. .+..+|+|+|.. ...++++|++||+..+.+.++ ..
T Consensus 142 ~le~~~~~~~-~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~-~~ 218 (311)
T 4fcw_A 142 MLDDGRLTDS-HGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPL-TK 218 (311)
T ss_dssp HHHHSEEECT-TSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCC-CH
T ss_pred HHhcCEEEcC-CCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCC-CH
Confidence 9998765422 1222332 356689999972 234889999999876777777 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
+....|+... +...-.........+.++++++..|..+...... +.|.+.+++..+...
T Consensus 219 ~~~~~i~~~~--------------------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-n~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 219 EQIRQIVEIQ--------------------MSYLRARLAEKRISLELTEAAKDFLAERGYDPVF-GARPLRRVIQRELET 277 (311)
T ss_dssp HHHHHHHHHH--------------------THHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTT-BTTTHHHHHHHHTHH
T ss_pred HHHHHHHHHH--------------------HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccC-CchhHHHHHHHHHHH
Confidence 6666665532 1111111111233578999999999887652122 568888888765543
No 32
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=1.2e-16 Score=151.14 Aligned_cols=241 Identities=19% Similarity=0.253 Sum_probs=139.2
Q ss_pred ccChHHHHHHhhhhhc-------------c--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchh
Q 017575 38 IVGQEEMKLCLLLNVI-------------D--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM 102 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~-------------~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 102 (369)
++|++.+++.+..++. . ....+++|+||||||||++|++++..+. .++... ++..+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-------~~~~~~--~~~~l 87 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-------VPFTMA--DATTL 87 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-------CCEEEE--EHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-------CCEEEe--chHHh
Confidence 7899999888877661 0 1234599999999999999999999883 111110 00000
Q ss_pred h-hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHH---
Q 017575 103 G-IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH--- 178 (369)
Q Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~--- 178 (369)
. ....+ .. ....+ ........+.+..+.++++||||++.+++.
T Consensus 88 ~~~~~~g-------------------------------~~-~~~~~-~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~ 134 (363)
T 3hws_A 88 TEAGYVG-------------------------------ED-VENII-QKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDN 134 (363)
T ss_dssp TTCHHHH-------------------------------HH-HTHHH-HHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSC
T ss_pred ccccccc-------------------------------cc-HHHHH-HHHHHHhhhhHHhcCCcEEEEeChhhhcccccc
Confidence 0 00000 00 00000 000011123344456889999999877665
Q ss_pred -----------HHHHHHHHHhcCCceeeeccee--------eeecCceEEEeecCCCC---------CC-----------
Q 017575 179 -----------LVDVLLDSAASGWNTVEREGIS--------ISHPARFILIGSGNPEE---------GE----------- 219 (369)
Q Consensus 179 -----------~~~~L~~~l~~~~~~~~~~~~~--------~~~~~~~~li~t~n~~~---------~~----------- 219 (369)
+++.|+++|+.....+...+.. +....+..+|+++|... +.
T Consensus 135 ~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~ 214 (363)
T 3hws_A 135 PSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVK 214 (363)
T ss_dssp C---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC---------
T ss_pred cccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccc
Confidence 8999999999433333211111 11223455566655320 01
Q ss_pred ------------------------CCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHH
Q 017575 220 ------------------------LRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQI 275 (369)
Q Consensus 220 ------------------------l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 275 (369)
+.++|++||+..+.+.++ ..+...+|+...... +..++
T Consensus 215 ~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl-~~~~~~~I~~~~~~~-----------------l~~~~ 276 (363)
T 3hws_A 215 AKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL-SEEALIQILKEPKNA-----------------LTKQY 276 (363)
T ss_dssp ---CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC-CHHHHHHHHHSSTTC-----------------HHHHH
T ss_pred ccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC-CHHHHHHHHHHHHHH-----------------HHHHH
Confidence 789999999986666666 677777776631100 11122
Q ss_pred HHH-HhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCC-------CCCHHHHHHHHh
Q 017575 276 ASA-RSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRD-------KVSAEDIATVMP 339 (369)
Q Consensus 276 ~~~-~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~-------~v~~~~i~~a~~ 339 (369)
... ......+.+++++++.|...+...+. +.|.+.+++..+-.-+..+..+ .|++++|++...
T Consensus 277 ~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~-gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 277 QALFNLEGVDLEFRDEALDAIAKKAMARKT-GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHHHTTC-TTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCSC
T ss_pred HHHHHhcCceEEECHHHHHHHHHhhcCCcc-CchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcCC
Confidence 222 22234578999999999987766555 5799999998887666554422 367777765543
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=142.19 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=121.2
Q ss_pred CCCCccccChHHHHHHhhhhh---cc---------CCCCeeEEecCCCCChhHHHHHHHhccCcceee-cCCCCCCCCCC
Q 017575 32 VYPFTAIVGQEEMKLCLLLNV---ID---------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVV-VGDPYNSDPED 98 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l---~~---------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~~~~~ 98 (369)
...|++++|.+.+++.+...+ .. ....+++|+||||||||+++++++..+...-.. ....+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~----- 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFV----- 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTS-----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH-----
Confidence 357889999988877664332 11 122349999999999999999999877421100 000000
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCCCC
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVNLL 175 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~~l 175 (369)
..........+ .+.+. ...++++||||++.+
T Consensus 77 ----------------------------~~~~~~~~~~~------------------~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 77 ----------------------------EVIGGLGAARV------------------RSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp ----------------------------SSSTTHHHHHH------------------HHHHHHHHHTCSEEEEEECC---
T ss_pred ----------------------------hhccChhHHHH------------------HHHHHHHHhcCCeEEEEeCcchh
Confidence 00000000000 01111 124789999999887
Q ss_pred C------------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 176 D------------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 176 ~------------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
. ...+..+..+++. +. + ...+..+.+|+|+|.. ..+++++++ ||+..+.++.| ..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~ll~~----~~--~--~~~~~~~~vi~~tn~~-~~ld~~l~~~~R~~~~i~i~~p-~~~ 180 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLNQLLVE----MD--G--MGTTDHVIVLASTNRA-DILDGALMRPGRLDRHVFIDLP-TLQ 180 (262)
T ss_dssp ----------------CHHHHHHHHH----HH--T--CCTTCCEEEEEEESCG-GGGGSGGGSTTSCCEEEECCSC-CHH
T ss_pred hccccccccCccchhHHHHHHHHHHH----hh--C--cCCCCCEEEEecCCCh-hhcCHHHhcCCcCCeEEEeCCc-CHH
Confidence 3 3334444444432 00 0 0113468899999954 357889998 99888888888 455
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL-NVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-~~~s~R~~~~ll~~a~a~ 320 (369)
.+..|+... + ... ....+.+. .+..++... |. +.|.+..+++.|...
T Consensus 181 ~r~~il~~~------------------------~-~~~----~~~~~~~~--~~~~l~~~~~g~-~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 181 ERREIFEQH------------------------L-KSL----KLTQSSTF--YSQRLAELTPGF-SGADIANICNEAALH 228 (262)
T ss_dssp HHHHHHHHH------------------------H-HHT----TCCBTHHH--HHHHHHHTCTTC-CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH------------------------H-HhC----CCCcchhh--HHHHHHHHCCCC-CHHHHHHHHHHHHHH
Confidence 565665422 1 111 12333332 122333332 34 668899999999999
Q ss_pred HHHcCCCCCCHHHHHHHHhHHhcccc
Q 017575 321 AALKGRDKVSAEDIATVMPNCLRHRL 346 (369)
Q Consensus 321 A~l~~~~~v~~~~i~~a~~~vl~~r~ 346 (369)
|..+++..|+.+|+..|+..+.....
T Consensus 229 a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 229 AAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp --------CCBCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHhccChh
Confidence 99888899999999999998876543
No 34
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=7.1e-16 Score=138.62 Aligned_cols=216 Identities=21% Similarity=0.267 Sum_probs=132.1
Q ss_pred CCCCCCccccChHHHHHHhhhhhc---cC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI---DP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~---~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.+...|++++|.+.+++.+...+. .+ ...+++|+||||||||++++++++.+... +..+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-------~~~i-- 76 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-------FFTI-- 76 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-------EEEE--
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-------EEEE--
Confidence 455689999999988776643321 00 12349999999999999999999887421 1000
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCCC
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVNL 174 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~~ 174 (369)
++..+. ....+.....+ ...+. ...++++|+||++.
T Consensus 77 ~~~~~~-----------------------~~~~~~~~~~~------------------~~~~~~a~~~~~~il~iDeid~ 115 (257)
T 1lv7_A 77 SGSDFV-----------------------EMFVGVGASRV------------------RDMFEQAKKAAPCIIFIDEIDA 115 (257)
T ss_dssp CSCSST-----------------------TSCCCCCHHHH------------------HHHHHHHHTTCSEEEEETTHHH
T ss_pred eHHHHH-----------------------HHhhhhhHHHH------------------HHHHHHHHHcCCeeehhhhhhh
Confidence 000000 00000000000 00111 12467999999943
Q ss_pred CCH--------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCC
Q 017575 175 LDD--------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVR 238 (369)
Q Consensus 175 l~~--------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~ 238 (369)
+.. ...+.++..|+.. ..+..+.+|+++|.. ..+++++.+ ||+..+.++.|
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~-~~l~~~l~r~~rf~~~i~i~~P- 182 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRP-DVLDPALLRPGRFDRQVVVGLP- 182 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCT-TTSCGGGGSTTSSCEEEECCCC-
T ss_pred hccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCCEEEEEeeCCc-hhCCHHHcCCCcCCeEEEeCCC-
Confidence 321 3455666666531 113468899999964 468999988 99988888888
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHc-CCCCCchhHHHHHH
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAEL-NVDGLRGDIVSNRA 316 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~-~~~s~R~~~~ll~~ 316 (369)
+.+.+..|+.... . ...+++++ ... ++... |. +.|.+..++..
T Consensus 183 ~~~~r~~il~~~~---------------------------~----~~~l~~~~~~~~---la~~~~G~-~~~dl~~l~~~ 227 (257)
T 1lv7_A 183 DVRGREQILKVHM---------------------------R----RVPLAPDIDAAI---IARGTPGF-SGADLANLVNE 227 (257)
T ss_dssp CHHHHHHHHHHHH---------------------------T----TSCBCTTCCHHH---HHHTCTTC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---------------------------h----cCCCCccccHHH---HHHHcCCC-CHHHHHHHHHH
Confidence 4555656654210 0 12232222 222 23322 33 77999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHhc
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl~ 343 (369)
|...|..+++..|+.+|+.+|+..+..
T Consensus 228 a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 228 AALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 999999999999999999999987653
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=6.1e-15 Score=128.57 Aligned_cols=213 Identities=20% Similarity=0.142 Sum_probs=132.9
Q ss_pred CCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++..|.+++|++..++.+...+.....++++|+||+|+|||++++.++..+..... ...+...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~--------------- 74 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEM--------------- 74 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEE---------------
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEe---------------
Confidence 44578899999999888877774323335999999999999999999987632110 0000000
Q ss_pred hccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcC
Q 017575 111 VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASG 190 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~ 190 (369)
.............. +... .........++.+++|||++.+++..++.|+.++++.
T Consensus 75 ----------------~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~ 129 (226)
T 2chg_A 75 ----------------NASDERGIDVVRHK------IKEF---ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY 129 (226)
T ss_dssp ----------------ETTCTTCHHHHHHH------HHHH---HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT
T ss_pred ----------------ccccccChHHHHHH------HHHH---hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc
Confidence 00000000000000 0000 0000111245779999999999999999999999862
Q ss_pred CceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHH
Q 017575 191 WNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAK 270 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 270 (369)
+....+|+++|.. ..+.+++.+||. .+.+++++ .+....++...
T Consensus 130 -------------~~~~~~i~~~~~~-~~~~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~-------------------- 173 (226)
T 2chg_A 130 -------------SKSCRFILSCNYV-SRIIEPIQSRCA-VFRFKPVP-KEAMKKRLLEI-------------------- 173 (226)
T ss_dssp -------------TTTEEEEEEESCG-GGSCHHHHTTSE-EEECCCCC-HHHHHHHHHHH--------------------
T ss_pred -------------CCCCeEEEEeCCh-hhcCHHHHHhCc-eeecCCCC-HHHHHHHHHHH--------------------
Confidence 2356677777743 458899999998 58888885 44444454321
Q ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 271 LQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 271 ~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.... .+.+++++...|...+. . ++|.+.+++..+...+ +.|+.+|+++++.
T Consensus 174 -----~~~~----~~~~~~~~~~~l~~~~~---g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 174 -----CEKE----GVKITEDGLEALIYISG---G-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp -----HHHH----TCCBCHHHHHHHHHHHT---T-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred -----HHHc----CCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 1111 34588888888876552 2 5687777776655433 6899999999876
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.63 E-value=1.5e-16 Score=157.81 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=95.1
Q ss_pred CCCeEEEeCCCCCCHH----HHHHHHHHHhcCCce-eeecceeeeec-CceEEEeecCCCCCCCCHhHHhhhccceeecC
Q 017575 163 NRGILYVDEVNLLDDH----LVDVLLDSAASGWNT-VEREGISISHP-ARFILIGSGNPEEGELRPQLLDRFGMHAQVGT 236 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~----~~~~L~~~l~~~~~~-~~~~~~~~~~~-~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~ 236 (369)
.++++||||++.+++. .++.|+++|+..+.. +...+.....+ .++.+|+|+|+. ..++++|++||.+ +.++.
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~-~~l~~aL~~R~~v-i~~~~ 252 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL-ATIPGPLRDRMEI-INIAG 252 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST-TTSCHHHHHHEEE-EECCC
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc-ccCCHHHHhhcce-eeeCC
Confidence 4569999999999887 458899999865432 22112222333 468899999964 4699999999975 88888
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
| +.+....|+.... +.+...........+.++++++..|...+.. -.+.|.+.+.+..
T Consensus 253 ~-~~~e~~~Il~~~l-------------------~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~--~~~vR~L~~~i~~ 310 (543)
T 3m6a_A 253 Y-TEIEKLEIVKDHL-------------------LPKQIKEHGLKKSNLQLRDQAILDIIRYYTR--EAGVRSLERQLAA 310 (543)
T ss_dssp C-CHHHHHHHHHHTH-------------------HHHHHHHTTCCGGGCEECHHHHHHHHHHHCC--CSSSHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHH-------------------HHHHHHHcCCCcccccCCHHHHHHHHHhCCh--hhchhHHHHHHHH
Confidence 8 4566666655321 1111111111122578899999887763331 1256888776665
Q ss_pred HHHHHHHc------CCCCCCHHHHHHHHhH
Q 017575 317 AKALAALK------GRDKVSAEDIATVMPN 340 (369)
Q Consensus 317 a~a~A~l~------~~~~v~~~~i~~a~~~ 340 (369)
+...|... +...|+.+++.+++..
T Consensus 311 ~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 311 ICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 55444432 2346899999988764
No 37
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=1.8e-15 Score=156.31 Aligned_cols=210 Identities=17% Similarity=0.221 Sum_probs=127.8
Q ss_pred ccccChHHHHHHhhhhhcc-------C--CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVID-------P--KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~-------~--~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (369)
..++|++.+++.+..++.. + ..++++|+||||||||++|++++..+.... .++..+ ++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~----~~~i~i--~~s~~~~~- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE----ESMIRI--DMSEYMEK- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT----TCEEEE--EGGGGCSS-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC----cceEEE--echhcccc-
Confidence 3578999988777666531 1 112599999999999999999999873211 111000 00000000
Q ss_pred hhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
... .++. ..+.+....++|+||||++.+++++++.|+++
T Consensus 564 ----------------------------------~~~----~~~~---l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 564 ----------------------------------HST----SGGQ---LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp ----------------------------------CCC----C------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred ----------------------------------ccc----ccch---hhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence 000 0000 01222334578999999999999999999999
Q ss_pred HhcCCceeeecceeeeecCceEEEeecCCCCCC-----------CCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccC
Q 017575 187 AASGWNTVEREGISISHPARFILIGSGNPEEGE-----------LRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDK 255 (369)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~-----------l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~ 255 (369)
|+++.++.. +.......++.+|+|+|..... ++++|++||+..+.++++ ..+....|+...
T Consensus 603 le~g~~~~~--~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l-~~~~~~~i~~~~----- 674 (758)
T 3pxi_A 603 LEDGRLTDS--KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL-EKKHLTEIVSLM----- 674 (758)
T ss_dssp HHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC---CHHHHHHHHHHH-----
T ss_pred hccCeEEcC--CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC-CHHHHHHHHHHH-----
Confidence 999877654 2223334678999999954432 889999999877888888 456666665532
Q ss_pred CChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 017575 256 NPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAA 317 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a 317 (369)
+...-.........+.+++++.++|.+.+..... +.|.+.+++..+
T Consensus 675 ---------------l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~R~L~~~i~~~ 720 (758)
T 3pxi_A 675 ---------------SDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEY-GARPLRRAIQKH 720 (758)
T ss_dssp ---------------HHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTT-TTTTHHHHHHHH
T ss_pred ---------------HHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCC-CChHHHHHHHHH
Confidence 1111112222234578999999999775433333 458877777643
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.63 E-value=5.2e-15 Score=143.34 Aligned_cols=204 Identities=15% Similarity=0.151 Sum_probs=121.9
Q ss_pred CCCCCCCccccChHHHHHHhhhhhcc------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVID------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
..|...|++++|++.++..+...+.. ....++||+||||||||++|++++..+.....+ ...+.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~-~v~~~--- 202 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF-SISSS--- 202 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE-EECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEE-EEeHH---
Confidence 34556899999999988877655420 112349999999999999999999987321100 00000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
++.. ...|... ......-.......++|+||||++.+.
T Consensus 203 --------~l~~---------------------------~~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~ 240 (444)
T 2zan_A 203 --------DLVS---------------------------KWLGESE-------KLVKNLFQLARENKPSIIFIDEIDSLC 240 (444)
T ss_dssp --------------------------------------------CC-------CTHHHHHHHHHHSCSEEEEESCTTTTC
T ss_pred --------HHHh---------------------------hhcchHH-------HHHHHHHHHHHHcCCeEEEEechHhhc
Confidence 0000 0000000 000000001122467899999998772
Q ss_pred -----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHH
Q 017575 177 -----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVK 245 (369)
Q Consensus 177 -----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~ 245 (369)
..+++.|+..|+... ..+..+.+|+|+|.. ..+++++++||+..+.++.| +.+.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P-~~~~r~~ 308 (444)
T 2zan_A 241 GSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIP-WVLDSAIRRRFEKRIYIPLP-EAHARAA 308 (444)
T ss_dssp CCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESCG-GGSCHHHHTTCCEEEECCCC-CHHHHHH
T ss_pred cCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCCc-cccCHHHHhhcceEEEeCCc-CHHHHHH
Confidence 245666666665311 123568899999954 46999999999987888888 5666666
Q ss_pred HHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH
Q 017575 246 IVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAA 322 (369)
Q Consensus 246 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~ 322 (369)
|+... .......+++..+..|+..+. |. |.+.+..+++.|...|.
T Consensus 309 il~~~-----------------------------l~~~~~~l~~~~l~~la~~t~--G~-sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 309 MFRLH-----------------------------LGSTQNSLTEADFQELGRKTD--GY-SGADISIIVRDALMQPV 353 (444)
T ss_dssp HHHHH-----------------------------HTTSCEECCHHHHHHHHHHTT--TC-CHHHHHHHHHHHHTHHH
T ss_pred HHHHH-----------------------------HhcCCCCCCHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHH
Confidence 65422 111234467777766666553 44 66788888777765554
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.62 E-value=4.8e-16 Score=143.47 Aligned_cols=215 Identities=16% Similarity=0.210 Sum_probs=131.8
Q ss_pred cccChHHHHHHhhhhhc---------------cCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch
Q 017575 37 AIVGQEEMKLCLLLNVI---------------DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA 101 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~---------------~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 101 (369)
+++|++.+++.+...+. .....+++|+||||||||++|++++..+.........++.. .++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~--~~~-- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVS--VTR-- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEE--EcH--
Confidence 58999988777753321 11223499999999999999999998874221100000000 000
Q ss_pred hhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC------
Q 017575 102 MGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL------ 175 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l------ 175 (369)
..+. . ...+ .......+.+..++++++||||++.+
T Consensus 108 --~~l~-------------------~--------~~~g----------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 148 (309)
T 3syl_A 108 --DDLV-------------------G--------QYIG----------HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE 148 (309)
T ss_dssp --GGTC-------------------C--------SSTT----------CHHHHHHHHHHHHTTSEEEEETGGGSCCCC--
T ss_pred --HHhh-------------------h--------hccc----------ccHHHHHHHHHhcCCCEEEEEChhhhccCCCc
Confidence 0000 0 0000 00001123344557889999999866
Q ss_pred ---CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHH
Q 017575 176 ---DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 176 ---~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~ 248 (369)
+...++.|++.|+++ +.++.+|+++|+... .++++|.+||...+.+++| +.+....|+.
T Consensus 149 ~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~-~~~~~~~il~ 214 (309)
T 3syl_A 149 RDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDY-SDEELFEIAG 214 (309)
T ss_dssp -CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCC-CHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCc-CHHHHHHHHH
Confidence 889999999999863 246678888875321 1468999999888999998 4566666654
Q ss_pred HhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc----CCCCCchhHHHHHHHHHHHHHc
Q 017575 249 ERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL----NVDGLRGDIVSNRAAKALAALK 324 (369)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~----~~~s~R~~~~ll~~a~a~A~l~ 324 (369)
.. ... ..+.+++++...+..++... ..++.|.+.+++..+...+..+
T Consensus 215 ~~-------------------------l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 215 HM-------------------------LDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp HH-------------------------HHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------------------------HHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 22 111 24689999999998876522 1124688888888776544332
Q ss_pred ----CCCCCCHHHHHHH
Q 017575 325 ----GRDKVSAEDIATV 337 (369)
Q Consensus 325 ----~~~~v~~~~i~~a 337 (369)
+...++.+++..+
T Consensus 266 ~~~~~~~~~~~~~l~~i 282 (309)
T 3syl_A 266 LFTASSGPLDARALSTI 282 (309)
T ss_dssp HHHC---CEEHHHHHEE
T ss_pred HHhccCCCCCHHHHhhc
Confidence 3456777776644
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.62 E-value=2.1e-15 Score=140.25 Aligned_cols=215 Identities=15% Similarity=0.124 Sum_probs=127.8
Q ss_pred hcCCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhh
Q 017575 27 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 27 ~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
++.+| ..|++++|++.++..+...+......+ +++.||||||||+++++++..+...-. .++.....
T Consensus 18 ~k~rP-~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~----~i~~~~~~------- 85 (324)
T 3u61_B 18 QKYRP-STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM----FVNGSDCK------- 85 (324)
T ss_dssp HHSCC-CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE----EEETTTCC-------
T ss_pred HhhCC-CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE----EEcccccC-------
Confidence 33444 479999999999888887774222224 788888999999999999988842210 00000000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC-HHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-DHLVDVLL 184 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~-~~~~~~L~ 184 (369)
.+.+...+ ..+... ....++++++||||++.+. .+.++.|+
T Consensus 86 ----------------------------~~~i~~~~---~~~~~~-------~~~~~~~~vliiDEi~~l~~~~~~~~L~ 127 (324)
T 3u61_B 86 ----------------------------IDFVRGPL---TNFASA-------ASFDGRQKVIVIDEFDRSGLAESQRHLR 127 (324)
T ss_dssp ----------------------------HHHHHTHH---HHHHHB-------CCCSSCEEEEEEESCCCGGGHHHHHHHH
T ss_pred ----------------------------HHHHHHHH---HHHHhh-------cccCCCCeEEEEECCcccCcHHHHHHHH
Confidence 00000000 000000 0011256799999999999 99999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
..+++. +.++.+|+++|... .+++++.+||.. +.+.+|+ .+....|+.....
T Consensus 128 ~~le~~-------------~~~~~iI~~~n~~~-~l~~~l~sR~~~-i~~~~~~-~~e~~~il~~~~~------------ 179 (324)
T 3u61_B 128 SFMEAY-------------SSNCSIIITANNID-GIIKPLQSRCRV-ITFGQPT-DEDKIEMMKQMIR------------ 179 (324)
T ss_dssp HHHHHH-------------GGGCEEEEEESSGG-GSCTTHHHHSEE-EECCCCC-HHHHHHHHHHHHH------------
T ss_pred HHHHhC-------------CCCcEEEEEeCCcc-ccCHHHHhhCcE-EEeCCCC-HHHHHHHHHHHHH------------
Confidence 999861 24567888888544 689999999975 8998884 5555455442110
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCH-HHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDH-DLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
....+.. ...+.+++ +++..|...+. . +.|.+.+.+..+. ....|+.+++..++.
T Consensus 180 ------~l~~~~~----~~~~~~~~~~~~~~l~~~~~---g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 180 ------RLTEICK----HEGIAIADMKVVAALVKKNF---P-DFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp ------HHHHHHH----HHTCCBSCHHHHHHHHHHTC---S-CTTHHHHHHHHHG------GGTCBCC--------
T ss_pred ------HHHHHHH----HcCCCCCcHHHHHHHHHhCC---C-CHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 0011111 12467877 88888776642 2 6798888777654 234577777776544
No 41
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=3.3e-15 Score=154.37 Aligned_cols=221 Identities=14% Similarity=0.180 Sum_probs=135.8
Q ss_pred cccChHHHHHHhhhhhccC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhh
Q 017575 37 AIVGQEEMKLCLLLNVIDP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
.++|++.+++.+..++... ..++++|+||||||||++|++++..+... +..+ ++......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~-------~~~i--~~s~~~~~-- 527 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE-------LLRF--DMSEYMER-- 527 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCE-------EEEE--EGGGCSSS--
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------EEEE--echhhcch--
Confidence 4789998887766555311 12359999999999999999999988411 1000 00000000
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
.. ...++..+. |..+. -.++. ..+.+..+.++|+||||++.+++++++.|+++|
T Consensus 528 ------~~------~~~l~g~~~--------g~~g~---~~~~~---l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~l 581 (758)
T 1r6b_X 528 ------HT------VSRLIGAPP--------GYVGF---DQGGL---LTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVM 581 (758)
T ss_dssp ------SC------CSSSCCCCS--------CSHHH---HHTTH---HHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred ------hh------HhhhcCCCC--------CCcCc---cccch---HHHHHHhCCCcEEEEeCccccCHHHHHHHHHHh
Confidence 00 000000000 00000 00110 123334456789999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCC------------------------CCCHhHHhhhccceeecCCCCHHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEG------------------------ELRPQLLDRFGMHAQVGTVRDAELR 243 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~------------------------~l~~al~~R~~~~i~~~~~~~~~~~ 243 (369)
+++.++.. .|..+.. .++.+|+|+|+... .++++|++||+..+.++++ ..+..
T Consensus 582 e~~~~~~~-~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l-~~~~~ 658 (758)
T 1r6b_X 582 DNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL-STDVI 658 (758)
T ss_dssp HHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCC-CHHHH
T ss_pred cCcEEEcC-CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCC-CHHHH
Confidence 99877653 3555554 57889999997431 4789999999877888888 45666
Q ss_pred HHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 244 VKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 244 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
..|+.... .+.-.........+.+++++++.|.+.....+. +.|.+.+++..+.
T Consensus 659 ~~i~~~~l--------------------~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 659 HQVVDKFI--------------------VELQVQLDQKGVSLEVSQEARNWLAEKGYDRAM-GARPMARVIQDNL 712 (758)
T ss_dssp HHHHHHHH--------------------HHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTT-BTTTHHHHHHHHH
T ss_pred HHHHHHHH--------------------HHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCC-CchHHHHHHHHHH
Confidence 66655321 111111111122468999999999988765444 5788888776554
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.61 E-value=3.2e-17 Score=148.30 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=130.8
Q ss_pred CCCCCCccccChHHHHHHhhhhhc-----------c-CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI-----------D-PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~-----------~-~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.+...|++++|++.+++.+...+. . ....+++|+||||||||++|++++..+. .++..+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-------~~~~~v~- 76 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-------VPFFSMG- 76 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-------CCCCCCC-
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-------CCEEEec-
Confidence 455689999998877665544331 0 0123499999999999999999998773 2221110
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCCC
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVNL 174 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~~ 174 (369)
+........ +. +... ..+.+. ...++++||||++.
T Consensus 77 -~~~~~~~~~-----------------------~~-----------------~~~~-~~~~~~~a~~~~~~vl~iDEid~ 114 (268)
T 2r62_A 77 -GSSFIEMFV-----------------------GL-----------------GASR-VRDLFETAKKQAPSIIFIDEIDA 114 (268)
T ss_dssp -SCTTTTSCS-----------------------SS-----------------CSSS-SSTTHHHHHHSCSCEEEESCGGG
T ss_pred -hHHHHHhhc-----------------------ch-----------------HHHH-HHHHHHHHHhcCCeEEEEeChhh
Confidence 000000000 00 0000 011111 12568999999987
Q ss_pred CCHHH---------------HHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCC
Q 017575 175 LDDHL---------------VDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTV 237 (369)
Q Consensus 175 l~~~~---------------~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~ 237 (369)
+.... ++.|+..++.. ......+.+|+|+|.. ..+++++.+ ||...+.++.|
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~ttn~~-~~ld~~l~r~~Rf~~~i~i~~p 183 (268)
T 2r62_A 115 IGKSRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVIVLAATNRP-EILDPALMRPGRFDRQVLVDKP 183 (268)
T ss_dssp TTC----------CCCSCSSTTTTTTTTTCS----------SCSCSCCEEEECBSCC-TTSCGGGGSSSSSCCCCBCCCC
T ss_pred hcccccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEEEEEecCCc-hhcCHhHcCCCCCCeEEEecCc
Confidence 76532 23333333320 0123458899999964 458999999 89888899988
Q ss_pred CCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHH-HHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 238 RDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHD-LKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 238 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
+. +.+..++.... ....+..+ .+..|...+ .|. +.|.+..++..
T Consensus 184 ~~-~~r~~il~~~~-------------------------------~~~~~~~~~~~~~la~~~--~g~-~g~dl~~l~~~ 228 (268)
T 2r62_A 184 DF-NGRVEILKVHI-------------------------------KGVKLANDVNLQEVAKLT--AGL-AGADLANIINE 228 (268)
T ss_dssp CT-TTHHHHHHHHT-------------------------------SSSCCCSSCCTTTTTSSS--CSS-CHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHH-------------------------------hcCCCCCccCHHHHHHHc--CCC-CHHHHHHHHHH
Confidence 54 44555544221 01111111 112222221 244 56888889999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHhccccc
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCLRHRLR 347 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl~~r~~ 347 (369)
|...|..++...|+.+|+..++..+..++..
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHHhhcchh
Confidence 9888888888899999999999988887664
No 43
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=6.7e-15 Score=136.48 Aligned_cols=230 Identities=20% Similarity=0.192 Sum_probs=137.0
Q ss_pred hhhcCCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhh
Q 017575 25 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGI 104 (369)
Q Consensus 25 ~~~~~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
..++.+|. .|++++|++.+++.+...+......+++|+||||+|||++++.++..+..... ..
T Consensus 15 ~~~k~~p~-~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~----------------~~ 77 (327)
T 1iqp_A 15 WVEKYRPQ-RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW----------------RH 77 (327)
T ss_dssp HHHHTCCC-STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH----------------HH
T ss_pred hhhccCCC-CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc----------------cC
Confidence 33444444 78999999999888877764222335999999999999999999988631100 00
Q ss_pred hhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 105 EVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
. ++.+..... ... .. ....+.. . ...+++..+++.++++||++.+++..++.|+
T Consensus 78 ~-------------------~~~~~~~~~-~~~-~~--~~~~~~~-~--~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~ 131 (327)
T 1iqp_A 78 N-------------------FLELNASDE-RGI-NV--IREKVKE-F--ARTKPIGGASFKIIFLDEADALTQDAQQALR 131 (327)
T ss_dssp H-------------------EEEEETTCH-HHH-HT--THHHHHH-H--HHSCCGGGCSCEEEEEETGGGSCHHHHHHHH
T ss_pred c-------------------eEEeecccc-Cch-HH--HHHHHHH-H--HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHH
Confidence 0 000000000 000 00 0000000 0 0012222346789999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhh
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSY 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 264 (369)
..|++. +....+|+++|.. ..+.+++.+||.. +.+++++ .+....++...
T Consensus 132 ~~le~~-------------~~~~~~i~~~~~~-~~l~~~l~sr~~~-~~~~~l~-~~~~~~~l~~~-------------- 181 (327)
T 1iqp_A 132 RTMEMF-------------SSNVRFILSCNYS-SKIIEPIQSRCAI-FRFRPLR-DEDIAKRLRYI-------------- 181 (327)
T ss_dssp HHHHHT-------------TTTEEEEEEESCG-GGSCHHHHHTEEE-EECCCCC-HHHHHHHHHHH--------------
T ss_pred HHHHhc-------------CCCCeEEEEeCCc-cccCHHHHhhCcE-EEecCCC-HHHHHHHHHHH--------------
Confidence 999862 2345667777743 3588999999984 8888874 44444443311
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH-------HHcCCCCCCHHHHHHH
Q 017575 265 KAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALA-------ALKGRDKVSAEDIATV 337 (369)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A-------~l~~~~~v~~~~i~~a 337 (369)
.....+.++++++..|...+. . ++|.+.+++..+...+ .......+.+.++.+.
T Consensus 182 ---------------~~~~~~~~~~~~~~~l~~~~~---g-~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l 242 (327)
T 1iqp_A 182 ---------------AENEGLELTEEGLQAILYIAE---G-DMRRAINILQAAAALDKKITDENVFMVASRARPEDIREM 242 (327)
T ss_dssp ---------------HHTTTCEECHHHHHHHHHHHT---T-CHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHH
T ss_pred ---------------HHhcCCCCCHHHHHHHHHHCC---C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHH
Confidence 112356789999988887763 2 6788888776554221 1111233445555555
Q ss_pred HhHHhcccc
Q 017575 338 MPNCLRHRL 346 (369)
Q Consensus 338 ~~~vl~~r~ 346 (369)
+..++.++.
T Consensus 243 ~~~~~~~~~ 251 (327)
T 1iqp_A 243 MLLALKGNF 251 (327)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHcCCH
Confidence 666665543
No 44
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.60 E-value=4.1e-15 Score=142.32 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=100.7
Q ss_pred CCCeEEEeCCCCCCH------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeec-----CCCCCCCCHhHH
Q 017575 163 NRGILYVDEVNLLDD------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSG-----NPEEGELRPQLL 225 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~-----n~~~~~l~~al~ 225 (369)
+.+++++||++.+.. .+|+.|+++|+..++.. ....+. ..++.+|+|+ ||.+ +-++|.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~--~~~~~d-~~~ilfI~~gaf~~~~~~d--lipel~ 324 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST--KHGMVK-TDHILFIASGAFQVARPSD--LIPELQ 324 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE--TTEEEE-CTTCEEEEEECCSSCCGGG--SCHHHH
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc--ccceec-CCcEEEEeccccccCChhh--cchHHh
Confidence 567999999965532 27899999999765443 121121 2467888887 6543 558999
Q ss_pred hhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH----
Q 017575 226 DRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE---- 301 (369)
Q Consensus 226 ~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~---- 301 (369)
+||.+++.++.. +.+...+|+..-. ...+.++.........++.++++++..|++.+.+
T Consensus 325 ~R~~i~i~l~~l-t~~e~~~Il~~~~----------------~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~ 387 (444)
T 1g41_A 325 GRLPIRVELTAL-SAADFERILTEPH----------------ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 387 (444)
T ss_dssp TTCCEEEECCCC-CHHHHHHHHHSST----------------TCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeCCCC-CHHHHHHHHHHHH----------------HhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccC
Confidence 999998888888 6777778875210 0112233333333445688999999999987653
Q ss_pred -cCCCCCchhHHHHHHHHHHHHHcC-----C-CCCCHHHHHHHHhH
Q 017575 302 -LNVDGLRGDIVSNRAAKALAALKG-----R-DKVSAEDIATVMPN 340 (369)
Q Consensus 302 -~~~~s~R~~~~ll~~a~a~A~l~~-----~-~~v~~~~i~~a~~~ 340 (369)
-+. ++|.+.+++..+..-+.++- . -.|+.+++...+.-
T Consensus 388 t~~~-GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 388 TENI-GARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp SCCC-GGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred CccC-CchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCc
Confidence 233 67998887776544433321 1 14788888876653
No 45
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.59 E-value=4.2e-15 Score=141.48 Aligned_cols=239 Identities=17% Similarity=0.144 Sum_probs=146.1
Q ss_pred CccccChHHHHHHhhhhh--ccCCCCeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNV--IDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l--~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
+..++|+......+...+ +......++|.|++||||+++++++....+... .+. .+++.........+++++.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv--~v~~~~~~~~~~~~elfg~-- 211 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFV--ALNVASIPRDIFEAELFGY-- 211 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEE--EEETTTSCHHHHHHHHHCB--
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeE--EEecCCCCHHHHHHHhcCC--
Confidence 345777765544332222 111222399999999999999999998875321 111 1122222223333333331
Q ss_pred ccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCC
Q 017575 112 KGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGW 191 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~ 191 (369)
.. .++ .|.....+|.+..+++|++||||++.++++.|..|+++|+++.
T Consensus 212 -----------------------------~~--g~~-tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~ 259 (387)
T 1ny5_A 212 -----------------------------EK--GAF-TGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGK 259 (387)
T ss_dssp -----------------------------CT--TSS-TTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSE
T ss_pred -----------------------------CC--CCC-CCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCc
Confidence 10 001 1222346789999999999999999999999999999999986
Q ss_pred ceeeecceeeeecCceEEEeecCCC------CCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhH
Q 017575 192 NTVEREGISISHPARFILIGSGNPE------EGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYK 265 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~li~t~n~~------~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 265 (369)
+.- .|.....+.++.+|+++|.. .+.+.+.|..|+.. +.+.-|+.++...+|...-
T Consensus 260 ~~~--~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~--------------- 321 (387)
T 1ny5_A 260 FYR--LGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLA--------------- 321 (387)
T ss_dssp ECC--BTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHH---------------
T ss_pred EEe--CCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHH---------------
Confidence 543 35556667789999999963 25589999999865 4444443444444443211
Q ss_pred HHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 017575 266 AEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATV 337 (369)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a 337 (369)
..+.+++.... ......++++++..+..+....| .|.+.+++..|...+ ..+.|+.+|+...
T Consensus 322 ---~~~l~~~~~~~-~~~~~~~~~~a~~~l~~~~wpGN---vreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 322 ---NHFLKKFSRKY-AKEVEGFTKSAQELLLSYPWYGN---VRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp ---HHHHHHHHHHT-TCCCCEECHHHHHHHHHSCCTTH---HHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred ---HHHHHHHHHHc-CCCCCCCCHHHHHHHHhCCCCcH---HHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 11111111111 12224689999998887765433 488888777765543 3457888888643
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.59 E-value=9.5e-15 Score=134.45 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=98.4
Q ss_pred CCCCCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.|...|++++|.+.+++.+...+.. ....+++|+||||||||++|++++..+... +..
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-------~i~-- 79 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FIS-- 79 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-------EEE--
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-------EEE--
Confidence 4556899999999887776655421 122349999999999999999999987411 100
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVN 173 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~ 173 (369)
.++..+.... .|.. .....+.+. ...|+++||||++
T Consensus 80 v~~~~l~~~~-------------------------------~g~~----------~~~~~~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 80 IKGPELLTMW-------------------------------FGES----------EANVREIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp ECHHHHHHHH-------------------------------HTTC----------TTHHHHHHHHHHHTCSEEEEECSTT
T ss_pred EEhHHHHhhh-------------------------------cCch----------HHHHHHHHHHHHhcCCeEEEEEChH
Confidence 0010000000 0000 000011111 1357899999997
Q ss_pred CCCH--------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCC
Q 017575 174 LLDD--------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTV 237 (369)
Q Consensus 174 ~l~~--------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~ 237 (369)
.+.+ .+++.|+..|+.- . ...++.+|+|+|.. ..+++++++ ||...+.++.|
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~----~-------~~~~v~vi~atn~~-~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 119 SIAKARGGNIGDGGGAADRVINQILTEMDGM----S-------TKKNVFIIGATNRP-DIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp HHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS----C-------TTSSEEEEEEESCG-GGSCGGGGSTTSSCEEEECCCC
T ss_pred HHhhccCCCcCCcchHHHHHHHHHHHHhhcc----c-------CCCCEEEEEecCCc-cccChHHhcCCccceEEecCCc
Confidence 6544 3467888888741 0 13468899999954 458999998 99988899888
Q ss_pred CCHHHHHHHHH
Q 017575 238 RDAELRVKIVE 248 (369)
Q Consensus 238 ~~~~~~~~il~ 248 (369)
+.+.+..|+.
T Consensus 187 -~~~~r~~il~ 196 (301)
T 3cf0_A 187 -DEKSRVAILK 196 (301)
T ss_dssp -CHHHHHHHHH
T ss_pred -CHHHHHHHHH
Confidence 5566666755
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.59 E-value=1e-14 Score=141.47 Aligned_cols=217 Identities=23% Similarity=0.274 Sum_probs=133.1
Q ss_pred CCCCCCccccChHHHHHHhhhhhc---cC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI---DP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~---~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
.+...|++++|+++++..+...+. .+ ...+++|+||||||||++++++++... .+|..+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~-------~~f~~i-- 80 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN-------VPFFHI-- 80 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT-------CCEEEE--
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC-------CCeeeC--
Confidence 345689999999887665543321 00 123499999999999999999998763 111100
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhh---cCCCeEEEeCCCC
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK---ANRGILYVDEVNL 174 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---a~~~vl~lDE~~~ 174 (369)
++ +++. ....+. ++ .. ....+.. ..|+++||||++.
T Consensus 81 s~----~~~~-------------------~~~~g~----------------~~-~~-~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 81 SG----SDFV-------------------ELFVGV----------------GA-AR-VRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp EG----GGTT-------------------TCCTTH----------------HH-HH-HHHHHHHHHHTCSEEEEEETGGG
T ss_pred CH----HHHH-------------------HHHhcc----------------cH-HH-HHHHHHHHHhcCCCEEEEechhh
Confidence 00 0000 000000 00 00 0111211 2578999999976
Q ss_pred CCH--------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCC
Q 017575 175 LDD--------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVR 238 (369)
Q Consensus 175 l~~--------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~ 238 (369)
+.. ..++.|+..|+.- ..+..+.+|+++|.. ..+++++++ ||+..+.++.|
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTn~~-~~Ld~allR~gRFd~~i~i~~P- 186 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKEGIIVMAATNRP-DILDPALLRPGRFDKKIVVDPP- 186 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHHHHHS-----------CGGGTEEEEEEESCG-GGSCGGGGSTTSSCEEEECCCC-
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCCCEEEEEecCCh-hhhchhhcccCcceeEeecCCC-
Confidence 533 2456666666531 113468899999964 458999987 99988999888
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHc-CCCCCchhHHHHHH
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAEL-NVDGLRGDIVSNRA 316 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~-~~~s~R~~~~ll~~ 316 (369)
+.+.+..|+.... + ...+++++ +.. ++... |. +.|.+.+++..
T Consensus 187 d~~~R~~Il~~~~---------------------------~----~~~l~~~v~l~~---la~~t~G~-sgadL~~lv~~ 231 (476)
T 2ce7_A 187 DMLGRKKILEIHT---------------------------R----NKPLAEDVNLEI---IAKRTPGF-VGADLENLVNE 231 (476)
T ss_dssp CHHHHHHHHHHHH---------------------------T----TSCBCTTCCHHH---HHHTCTTC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---------------------------H----hCCCcchhhHHH---HHHhcCCC-cHHHHHHHHHH
Confidence 5566666654211 1 11222222 233 33333 34 56889999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
|...|..++...|+.+|+..++..+...
T Consensus 232 Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 232 AALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 9999998888999999999999988653
No 48
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.57 E-value=2.4e-14 Score=126.40 Aligned_cols=230 Identities=17% Similarity=0.259 Sum_probs=134.5
Q ss_pred CCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhh
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRE 108 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (369)
..+..+.+++|++..++.+...+......+ ++|+||+|+|||++++.++..+.........++. .+. ...
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~----~~~----~~~- 87 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG----VCD----NCR- 87 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS----CSH----HHH-
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc----ccH----HHH-
Confidence 344478899999999888877764222223 9999999999999999999877422110000000 000 000
Q ss_pred hhhccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHH
Q 017575 109 SVVKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDS 186 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~ 186 (369)
.+..... ..++..... .....+. ..+.. ... .....++.+++|||++.+++..++.|+..
T Consensus 88 ~~~~~~~-------~~~~~~~~~~~~~~~~~~------~~~~~----~~~-~~~~~~~~vlviDe~~~l~~~~~~~l~~~ 149 (250)
T 1njg_A 88 EIEQGRF-------VDLIEIDAASRTKVEDTR------DLLDN----VQY-APARGRFKVYLIDEVHMLSRHSFNALLKT 149 (250)
T ss_dssp HHHTTCC-------SSEEEEETTCGGGHHHHH------HHHHS----CCC-SCSSSSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred HHhccCC-------cceEEecCcccccHHHHH------HHHHH----hhh-chhcCCceEEEEECcccccHHHHHHHHHH
Confidence 0000000 000000000 0000000 00000 000 00123467999999999999999999999
Q ss_pred HhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHH
Q 017575 187 AASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKA 266 (369)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 266 (369)
+++. +..+.+|+++|.. ..+.+++.+|+. .+.+++++ .+....++...
T Consensus 150 l~~~-------------~~~~~~i~~t~~~-~~~~~~l~~r~~-~i~l~~l~-~~e~~~~l~~~---------------- 197 (250)
T 1njg_A 150 LEEP-------------PEHVKFLLATTDP-QKLPVTILSRCL-QFHLKALD-VEQIRHQLEHI---------------- 197 (250)
T ss_dssp HHSC-------------CTTEEEEEEESCG-GGSCHHHHTTSE-EEECCCCC-HHHHHHHHHHH----------------
T ss_pred HhcC-------------CCceEEEEEeCCh-HhCCHHHHHHhh-hccCCCCC-HHHHHHHHHHH----------------
Confidence 9752 3456677777743 358899999975 48888884 44444443321
Q ss_pred HHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 267 EQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 267 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+ .. ..+.+++++...|.+.+. | ++|.+..+++.+. ..+...|+.+|+++++.
T Consensus 198 --------~-~~----~~~~~~~~~~~~l~~~~~--G--~~~~~~~~~~~~~----~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 198 --------L-NE----EHIAHEPRALQLLARAAE--G--SLRDALSLTDQAI----ASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp --------H-HH----TTCCBCHHHHHHHHHHHT--T--CHHHHHHHHHHHH----TTTTSSBCHHHHHHHSC
T ss_pred --------H-Hh----cCCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHHH----hccCceecHHHHHHHhC
Confidence 1 11 245788888888887773 2 5788888777653 23345899999998864
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.55 E-value=6e-14 Score=124.08 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=129.5
Q ss_pred hcCCCCCCCccccC---hHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhh
Q 017575 27 ESQRPVYPFTAIVG---QEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMG 103 (369)
Q Consensus 27 ~~~~~~~~~~~i~G---~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (369)
...++..+|++++| +..+++.+......+...+++|+||||||||++++.++..+.... ..+... ++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~----~~~~~~--~~---- 88 (242)
T 3bos_A 19 VHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE----RRSFYI--PL---- 88 (242)
T ss_dssp CCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEE--EG----
T ss_pred CCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEE--EH----
Confidence 33444568888887 245666665554322233499999999999999999998874210 000000 00
Q ss_pred hhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHH--HH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHL--VD 181 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~--~~ 181 (369)
. .+...+ ....-...++.+++|||++.++... +.
T Consensus 89 ~-------------------------------~~~~~~-------------~~~~~~~~~~~vliiDe~~~~~~~~~~~~ 124 (242)
T 3bos_A 89 G-------------------------------IHASIS-------------TALLEGLEQFDLICIDDVDAVAGHPLWEE 124 (242)
T ss_dssp G-------------------------------GGGGSC-------------GGGGTTGGGSSEEEEETGGGGTTCHHHHH
T ss_pred H-------------------------------HHHHHH-------------HHHHHhccCCCEEEEeccccccCCHHHHH
Confidence 0 000000 0000011346799999998887655 88
Q ss_pred HHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhc--cceeecCCCCHHHHHHHHHHhhhccCC
Q 017575 182 VLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFG--MHAQVGTVRDAELRVKIVEERARFDKN 256 (369)
Q Consensus 182 ~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~--~~i~~~~~~~~~~~~~il~~~~~~~~~ 256 (369)
.|+.+++... . .....+|.++|..+. .+.+++.+||. ..+.+++|+. +....++...
T Consensus 125 ~l~~~l~~~~---~--------~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~-~~~~~~l~~~------ 186 (242)
T 3bos_A 125 AIFDLYNRVA---E--------QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMD-DEKLAALQRR------ 186 (242)
T ss_dssp HHHHHHHHHH---H--------HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCG-GGHHHHHHHH------
T ss_pred HHHHHHHHHH---H--------cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCH-HHHHHHHHHH------
Confidence 8888876410 0 112224444442222 35689999994 5588988854 4454554421
Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 017575 257 PKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIAT 336 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~ 336 (369)
.. ...+.+++++...|...+. . +.|.+.+++..+...|...++ .|+.+++++
T Consensus 187 -------------------~~----~~~~~~~~~~~~~l~~~~~---g-~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~ 238 (242)
T 3bos_A 187 -------------------AA----MRGLQLPEDVGRFLLNRMA---R-DLRTLFDVLDRLDKASMVHQR-KLTIPFVKE 238 (242)
T ss_dssp -------------------HH----HTTCCCCHHHHHHHHHHTT---T-CHHHHHHHHHHHHHHHHHHTC-CCCHHHHHH
T ss_pred -------------------HH----HcCCCCCHHHHHHHHHHcc---C-CHHHHHHHHHHHHHHHHHhCC-CCcHHHHHH
Confidence 11 1235789999888887652 2 679999999998888866654 599999999
Q ss_pred HHh
Q 017575 337 VMP 339 (369)
Q Consensus 337 a~~ 339 (369)
++.
T Consensus 239 ~l~ 241 (242)
T 3bos_A 239 MLR 241 (242)
T ss_dssp HHT
T ss_pred Hhh
Confidence 875
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=2.3e-14 Score=134.19 Aligned_cols=216 Identities=14% Similarity=0.135 Sum_probs=129.6
Q ss_pred CCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhh
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++.+|++++|++.+++.+...+......|++|+|||||||||+++++++.+..... ...
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~----------------~~~----- 78 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY----------------SNM----- 78 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH----------------HHH-----
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc----------------cce-----
Confidence 33489999999999999988884222223899999999999999999998742110 000
Q ss_pred hccccchhhhhccccccCCCC--CchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHh
Q 017575 111 VKGEELSITFSKINMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAA 188 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~ 188 (369)
+..+... ...+.+... ...+... +....++..++++||++.+....++.|+..|+
T Consensus 79 --------------~~~~~~~~~~~~~~ir~~---i~~~~~~------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le 135 (340)
T 1sxj_C 79 --------------VLELNASDDRGIDVVRNQ---IKDFAST------RQIFSKGFKLIILDEADAMTNAAQNALRRVIE 135 (340)
T ss_dssp --------------EEEECTTSCCSHHHHHTH---HHHHHHB------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred --------------EEEEcCcccccHHHHHHH---HHHHHhh------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Confidence 0000000 000000000 0000000 00011235699999999999999999999998
Q ss_pred cCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHH
Q 017575 189 SGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQ 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 268 (369)
+. +....+|+++|. ...+.+++.+||.. +.+.+++. +....++..
T Consensus 136 ~~-------------~~~~~~il~~n~-~~~i~~~i~sR~~~-~~~~~l~~-~~~~~~l~~------------------- 180 (340)
T 1sxj_C 136 RY-------------TKNTRFCVLANY-AHKLTPALLSQCTR-FRFQPLPQ-EAIERRIAN------------------- 180 (340)
T ss_dssp HT-------------TTTEEEEEEESC-GGGSCHHHHTTSEE-EECCCCCH-HHHHHHHHH-------------------
T ss_pred cC-------------CCCeEEEEEecC-ccccchhHHhhcee-EeccCCCH-HHHHHHHHH-------------------
Confidence 62 234556667774 34689999999974 88887743 333333221
Q ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 269 AKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
+ .....+.+++++...+..++.. +.|.+.+++..+...+.-.+...|+.+++..++.
T Consensus 181 ------~----~~~~~~~i~~~~~~~i~~~s~G----~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 181 ------V----LVHEKLKLSPNAEKALIELSNG----DMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp ------H----HHTTTCCBCHHHHHHHHHHHTT----CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred ------H----HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 1 1123567899998888887732 5677766665443222111223677777766544
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.54 E-value=1.3e-13 Score=130.56 Aligned_cols=246 Identities=18% Similarity=0.180 Sum_probs=144.0
Q ss_pred CCccccChHHHHHHhhhhhcc----CCCCeeEEecCCCCChhHHHHHHHhccCcce-----eecCCCCCCCCC-Ccchhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVID----PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK-----VVVGDPYNSDPE-DPEAMG 103 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~----~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~-~~~~~~ 103 (369)
.+..++|++..++.+...+.. ...+.++|+||||||||++++.++..+.... ......+++... ++....
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 346789999888777665521 1222399999999999999999998874320 000000111000 000111
Q ss_pred hhhhhhhhccccchhhhhccccccCCC-CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHH--HH
Q 017575 104 IEVRESVVKGEELSITFSKINMVDLPL-GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH--LV 180 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~--~~ 180 (369)
..+...+. . ..+. +.....+... +....-....+.++||||++.+... .+
T Consensus 97 ~~l~~~l~--~------------~~~~~~~~~~~~~~~-------------l~~~l~~~~~~~vlilDEi~~l~~~~~~~ 149 (387)
T 2v1u_A 97 SAIAEAVG--V------------RVPFTGLSVGEVYER-------------LVKRLSRLRGIYIIVLDEIDFLPKRPGGQ 149 (387)
T ss_dssp HHHHHHHS--C------------CCCSSCCCHHHHHHH-------------HHHHHTTSCSEEEEEEETTTHHHHSTTHH
T ss_pred HHHHHHhC--C------------CCCCCCCCHHHHHHH-------------HHHHHhccCCeEEEEEccHhhhcccCCCC
Confidence 11111100 0 0000 0000010000 0000001113559999999988776 77
Q ss_pred HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCC
Q 017575 181 DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNP 257 (369)
Q Consensus 181 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~ 257 (369)
..|..+++.... ...+..+.+|+++|..+ ..+.+++.+||.. .+.++++ ..+....++...
T Consensus 150 ~~l~~l~~~~~~--------~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l-~~~~~~~il~~~------- 213 (387)
T 2v1u_A 150 DLLYRITRINQE--------LGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPY-TAPQLRDILETR------- 213 (387)
T ss_dssp HHHHHHHHGGGC--------C-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCC-CHHHHHHHHHHH-------
T ss_pred hHHHhHhhchhh--------cCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCC-CHHHHHHHHHHH-------
Confidence 777777763110 00034677888888543 4588999999965 5788877 456665665532
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 017575 258 KEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATV 337 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a 337 (369)
+. .......+++++.+.+...+..... .+|.+.++++.|...|...+...|+.+|+..+
T Consensus 214 -----------------~~---~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a 272 (387)
T 2v1u_A 214 -----------------AE---EAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSA 272 (387)
T ss_dssp -----------------HH---HHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred -----------------HH---hhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 11 1122467888899999888873322 67999999999999999888899999999999
Q ss_pred HhHHhc
Q 017575 338 MPNCLR 343 (369)
Q Consensus 338 ~~~vl~ 343 (369)
+.....
T Consensus 273 ~~~~~~ 278 (387)
T 2v1u_A 273 RAEIER 278 (387)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 876543
No 52
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=2.1e-13 Score=128.14 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=123.2
Q ss_pred cCCCCCCCccccChHHHHHHhhhhh-ccCCCCeeEEecCCCCChhHHHHHHHh-ccCcceeecCCCCCCCCCCcchhhhh
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNV-IDPKIGGVMIMGDRGTGKSTTVRSLVD-LLPVIKVVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l-~~~~~g~vlL~Gp~G~GKTtla~~la~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (369)
+++| ..|++++|++.++..+...+ ......+++|+||||+||||+++++++ +..+..+.......... .+......
T Consensus 7 kyrP-~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~-~~~~~~~~ 84 (354)
T 1sxj_E 7 KYRP-KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV-TASNRKLE 84 (354)
T ss_dssp TTCC-CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred ccCC-CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec-ccccccce
Confidence 3444 47999999999998888776 322223499999999999999999999 45433211000000000 00000000
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhh--cccccc-----cchhhhcCCCeEEEeCCCCCCHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTE--GVKAFE-----PGLLAKANRGILYVDEVNLLDDH 178 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~-----~g~~~~a~~~vl~lDE~~~l~~~ 178 (369)
+....+ .. .+.+.... ............+.. ....+. +| ...++.+++|||++.+++.
T Consensus 85 ~~~~~~-~~----------~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~--l~~~~~vlilDE~~~L~~~ 149 (354)
T 1sxj_E 85 LNVVSS-PY----------HLEITPSD--MGNNDRIVIQELLKEVAQMEQVDFQDSKDG--LAHRYKCVIINEANSLTKD 149 (354)
T ss_dssp -CCEEC-SS----------EEEECCC------CCHHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHH
T ss_pred eeeecc-cc----------eEEecHhh--cCCcchHHHHHHHHHHHHhccccccccccc--cCCCCeEEEEeCccccCHH
Confidence 000000 00 00000000 000000000000000 000000 11 1246789999999999999
Q ss_pred HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCCh
Q 017575 179 LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPK 258 (369)
Q Consensus 179 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~ 258 (369)
.++.|++.|++. +....+|.++|. ...+.+++.+||. .+.+.+++ .+....++...
T Consensus 150 ~~~~L~~~le~~-------------~~~~~~Il~t~~-~~~l~~~l~sR~~-~~~~~~~~-~~~~~~~l~~~-------- 205 (354)
T 1sxj_E 150 AQAALRRTMEKY-------------SKNIRLIMVCDS-MSPIIAPIKSQCL-LIRCPAPS-DSEISTILSDV-------- 205 (354)
T ss_dssp HHHHHHHHHHHS-------------TTTEEEEEEESC-SCSSCHHHHTTSE-EEECCCCC-HHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhh-------------cCCCEEEEEeCC-HHHHHHHHHhhce-EEecCCcC-HHHHHHHHHHH--------
Confidence 999999999862 234556666663 3358899999995 48998884 45454454321
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhCCCcccC-HHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 259 EFRDSYKAEQAKLQQQIASARSSLPAVQID-HDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
.... .+.++ ++++..|...+. . +.|.+.+++..+...
T Consensus 206 -----------------~~~~----~~~~~~~~~l~~i~~~~~---G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 206 -----------------VTNE----RIQLETKDILKRIAQASN---G-NLRVSLLMLESMALN 243 (354)
T ss_dssp -----------------HHHH----TCEECCSHHHHHHHHHHT---T-CHHHHHHHHTHHHHT
T ss_pred -----------------HHHc----CCCCCcHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh
Confidence 1111 46788 888888887763 2 678888888766544
No 53
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.53 E-value=2e-14 Score=135.80 Aligned_cols=223 Identities=21% Similarity=0.186 Sum_probs=137.0
Q ss_pred ccccChHHHHHHhhhhh--ccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 36 TAIVGQEEMKLCLLLNV--IDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l--~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
..++|+......+...+ +......+++.|++||||+++++++....+....+. .+++.........+++++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv--~vnc~~~~~~~~~~~lfg~---- 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFV--DLNCASIPQELAESELFGH---- 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEE--EEESSSSCTTTHHHHHHEE----
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcE--EEEcccCChHHHHHHhcCc----
Confidence 35678765533332221 111223399999999999999999998775332111 1222222333334444331
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
.. .. -.|.....+|.+..++++++||||++.+++..|..|+.+|+++.+.
T Consensus 203 ---------------------------~~--g~-~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~ 252 (368)
T 3dzd_A 203 ---------------------------EK--GA-FTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFT 252 (368)
T ss_dssp ---------------------------CS--CS-SSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEEC
T ss_pred ---------------------------cc--cc-cCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcc
Confidence 10 00 1122334678899999999999999999999999999999998654
Q ss_pred eeecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHH
Q 017575 194 VEREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKA 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 266 (369)
-. |.....+.++.+|+++|... +.+.++|+.|+.. .+.+|+. ++...+|...-
T Consensus 253 ~~--g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpL--reR~~Di~~l~---------------- 312 (368)
T 3dzd_A 253 RL--GGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPL--RERGKDVILLA---------------- 312 (368)
T ss_dssp CB--TCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCG--GGSTTHHHHHH----------------
T ss_pred cC--CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCCh--hhchhhHHHHH----------------
Confidence 32 55555667899999999542 4588999999976 2445554 44333442211
Q ss_pred HHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 017575 267 EQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKAL 320 (369)
Q Consensus 267 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~ 320 (369)
..+.++.... .......+++++++.|..+....+ .|.+.+++..+...
T Consensus 313 --~~~l~~~~~~-~~~~~~~~~~~a~~~L~~~~wpGN---vreL~n~i~~~~~~ 360 (368)
T 3dzd_A 313 --EYFLKKFAKE-YKKNCFELSEETKEYLMKQEWKGN---VRELKNLIERAVIL 360 (368)
T ss_dssp --HHHHHHHHHH-TTCCCCCBCHHHHHHHHTCCCTTH---HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHH-cCCCCCCcCHHHHHHHHhCCCCcH---HHHHHHHHHHHHHh
Confidence 1111121111 112336799999998888776443 38888887776543
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=4.5e-14 Score=147.47 Aligned_cols=223 Identities=16% Similarity=0.199 Sum_probs=131.5
Q ss_pred ccccChHHHHHHhhhhhccCC---------CCeeEEecCCCCChhHHHHHHHhccCcce-eecCCCCCCCCCCcchhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPK---------IGGVMIMGDRGTGKSTTVRSLVDLLPVIK-VVVGDPYNSDPEDPEAMGIE 105 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~---------~g~vlL~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 105 (369)
..++|++.+++.+...+.... .++++|+||||||||++|++++..+.... .+...++.. .......+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~--~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE--YMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT--CCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh--ccchhHHHH
Confidence 457899988887766653111 13599999999999999999999884321 000011111 000011111
Q ss_pred hhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHH
Q 017575 106 VRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLD 185 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~ 185 (369)
+++. +. ...|.. .++. ..+.+....++++||||++.+++++++.|++
T Consensus 636 l~g~-------------------~~-----~~~G~~------~~g~---l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~ 682 (854)
T 1qvr_A 636 LIGA-------------------PP-----GYVGYE------EGGQ---LTEAVRRRPYSVILFDEIEKAHPDVFNILLQ 682 (854)
T ss_dssp C--------------------------------------------C---HHHHHHHCSSEEEEESSGGGSCHHHHHHHHH
T ss_pred HcCC-------------------CC-----CCcCcc------ccch---HHHHHHhCCCeEEEEecccccCHHHHHHHHH
Confidence 1100 00 000000 0000 0122223346799999999999999999999
Q ss_pred HHhcCCceeeecceeeeecCceEEEeecCCC-------------------------CCCCCHhHHhhhccceeecCCCCH
Q 017575 186 SAASGWNTVEREGISISHPARFILIGSGNPE-------------------------EGELRPQLLDRFGMHAQVGTVRDA 240 (369)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~-------------------------~~~l~~al~~R~~~~i~~~~~~~~ 240 (369)
+|+++.++-. .|..+.. .+..+|+|+|.. ...+.++|++||+..+.+.++ ..
T Consensus 683 ~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl-~~ 759 (854)
T 1qvr_A 683 ILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPL-TK 759 (854)
T ss_dssp HHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCC-CH
T ss_pred HhccCceECC-CCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCC-CH
Confidence 9999876532 2333333 467789999962 234789999999876777766 56
Q ss_pred HHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHH-HHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 017575 241 ELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIAS-ARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 241 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~ 318 (369)
+....|+... + .++.. .......+.++++++..|..+...... +.|.+.+++..+-
T Consensus 760 edi~~i~~~~--------------------l-~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~g-n~R~L~~~i~~~~ 816 (854)
T 1qvr_A 760 EQIRQIVEIQ--------------------L-SYLRARLAEKRISLELTEAAKDFLAERGYDPVF-GARPLRRVIQREL 816 (854)
T ss_dssp HHHHHHHHHH--------------------H-HHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTT-BTSTHHHHHHHHT
T ss_pred HHHHHHHHHH--------------------H-HHHHHHHHhCCceEEECHHHHHHHHHcCCCCCC-ChHHHHHHHHHHH
Confidence 6666665532 1 11111 111122468999999999988762122 4588888877654
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=1.2e-13 Score=134.66 Aligned_cols=220 Identities=17% Similarity=0.197 Sum_probs=128.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|++..++.+...+.....++++|+||||||||++++.++..+.... .+... .+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~----~p~~l------------~~----- 236 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE----VPEIL------------RD----- 236 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC----SCTTT------------SS-----
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCC----CChhh------------cC-----
Confidence 6788999999888877766433445699999999999999999999874211 00000 00
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
..++.+... ....|.+. ... .-....+....++|+|+| ...+.++.|+..|+++
T Consensus 237 ---------~~~~~l~~~---~~~~g~~e------~~~-~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g--- 290 (468)
T 3pxg_A 237 ---------KRVMTLDMG---TKYRGEFE------DRL-KKVMDEIRQAGNIILFID----AAIDASNILKPSLARG--- 290 (468)
T ss_dssp ---------CCEECC-------------C------TTH-HHHHHHHHTCCCCEEEEC----C--------CCCTTSS---
T ss_pred ---------CeEEEeeCC---ccccchHH------HHH-HHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---
Confidence 000000000 00000000 000 000011222457899999 4455666666666542
Q ss_pred eeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHH
Q 017575 194 VEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQA 269 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 269 (369)
.+.+|+++|+.++ .+++++.+||.. +.+++| ..+....|+....
T Consensus 291 ------------~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p-~~e~~~~iL~~~~------------------ 338 (468)
T 3pxg_A 291 ------------ELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQP-SVDESIQILQGLR------------------ 338 (468)
T ss_dssp ------------SCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCC-CHHHHHHHHHHTT------------------
T ss_pred ------------CEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCC-CHHHHHHHHHHHH------------------
Confidence 5678999997663 489999999986 999999 5566666655321
Q ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHcCCC-CCCHHHHHHHHh
Q 017575 270 KLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALKGRD-KVSAEDIATVMP 339 (369)
Q Consensus 270 ~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~~~~-~v~~~~i~~a~~ 339 (369)
........+.++++++.++..++..+-.. .++.++++++.|.+.+.+.+.. .....+++..+.
T Consensus 339 -------~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~ 404 (468)
T 3pxg_A 339 -------DRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLD 404 (468)
T ss_dssp -------TTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHH
T ss_pred -------HHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 11112246789999999999998865321 3568899999999888887654 223344444433
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=4e-13 Score=127.55 Aligned_cols=243 Identities=17% Similarity=0.159 Sum_probs=145.4
Q ss_pred CccccChHHHHHHhhhhhcc----CCCC--eeEEecCCCCChhHHHHHHHhccCcce--eecCCCCCCCCCCcchhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVID----PKIG--GVMIMGDRGTGKSTTVRSLVDLLPVIK--VVVGDPYNSDPEDPEAMGIEV 106 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~----~~~g--~vlL~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 106 (369)
+..++|++..++.+...+.. .... .++|+||||+|||++++.+++.+.... .+...++... ..+......+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-RNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-CSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-CCHHHHHHHH
Confidence 36789998877766555531 1224 599999999999999999998885431 0000011000 0000111111
Q ss_pred hhhhhccccchhhhhccccccCC-CCCchHhhhcccchhHHhhhcccccccchh-hhcCCCeEEEeCCCCCCHHHHHHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLP-LGATEDRVCGTIDIEKALTEGVKAFEPGLL-AKANRGILYVDEVNLLDDHLVDVLL 184 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-~~a~~~vl~lDE~~~l~~~~~~~L~ 184 (369)
...+. . ..+ .......+...+ ...+ ...++.+++|||++.++...+..|+
T Consensus 95 ~~~l~--~------------~~~~~~~~~~~~~~~l--------------~~~l~~~~~~~vlilDE~~~l~~~~~~~L~ 146 (389)
T 1fnn_A 95 ARSLN--I------------PFPRRGLSRDEFLALL--------------VEHLRERDLYMFLVLDDAFNLAPDILSTFI 146 (389)
T ss_dssp HHHTT--C------------CCCSSCCCHHHHHHHH--------------HHHHHHTTCCEEEEEETGGGSCHHHHHHHH
T ss_pred HHHhC--c------------cCCCCCCCHHHHHHHH--------------HHHHhhcCCeEEEEEECccccchHHHHHHH
Confidence 11000 0 000 000001110000 0001 1123669999999999999999999
Q ss_pred HHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCChHHH
Q 017575 185 DSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNPKEFR 261 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 261 (369)
.++++. .. ....++.+|+++|..+ ..+.+++.+||.. .+.++++ ..+....++..+
T Consensus 147 ~~~~~~----~~-----~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl-~~~~~~~~l~~~----------- 205 (389)
T 1fnn_A 147 RLGQEA----DK-----LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPY-TKDQIFDILLDR----------- 205 (389)
T ss_dssp HHTTCH----HH-----HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCC-BHHHHHHHHHHH-----------
T ss_pred HHHHhC----CC-----CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCC-CHHHHHHHHHHH-----------
Confidence 998641 00 0013566777777431 3478899999975 5777777 445555554422
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc------CCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017575 262 DSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL------NVDGLRGDIVSNRAAKALAALKGRDKVSAEDIA 335 (369)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~------~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~ 335 (369)
+.. ......++++++..+...+... +. .+|.+..+++.|...|..++...|+.+|+.
T Consensus 206 -------------~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 268 (389)
T 1fnn_A 206 -------------AKA---GLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVR 268 (389)
T ss_dssp -------------HHH---HBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred -------------HHh---hcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 111 1123478999999998888532 22 679999999999999999899999999999
Q ss_pred HHHhHHhcc
Q 017575 336 TVMPNCLRH 344 (369)
Q Consensus 336 ~a~~~vl~~ 344 (369)
.++..+...
T Consensus 269 ~~~~~~~~~ 277 (389)
T 1fnn_A 269 KSSKEVLFG 277 (389)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHHhhh
Confidence 998876544
No 57
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.51 E-value=1.7e-13 Score=124.22 Aligned_cols=221 Identities=17% Similarity=0.211 Sum_probs=118.1
Q ss_pred CCCCCCccccChHHHHHHhhhhhc--------------cCCCCeeEEecCCCCChhHHHHHHHhccCcceee-cCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI--------------DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVV-VGDPYNS 94 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~--------------~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~-~~~~~~~ 94 (369)
.|...|+++.|.+++++.+...+. ....| ++|+|||||||||+++++++.++..... .+..+..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 344567788787777666544321 11233 9999999999999999999988542110 0100000
Q ss_pred CCCCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCC
Q 017575 95 DPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~ 174 (369)
.........+... +.. .....|.++|+||++.
T Consensus 83 --~~~~~~~~~i~~v--------------------------------------------f~~--a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 83 --MYVGESERAVRQV--------------------------------------------FQR--AKNSAPCVIFFDEVDA 114 (274)
T ss_dssp --STTHHHHHHHHHH--------------------------------------------HHH--HHHTCSEEEEEETCTT
T ss_pred --hhhhHHHHHHHHH--------------------------------------------HHH--HHhcCCCeEeeehhhh
Confidence 0000000000000 000 0012467999999965
Q ss_pred CCH-----------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 175 LDD-----------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 175 l~~-----------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
+.. ...+.++..|+.+. .....++++++|.. ..+++++++ ||+..+.++.| +.+
T Consensus 115 ~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i~ia~tn~p-~~LD~al~r~gRfd~~i~~~~P-~~~ 181 (274)
T 2x8a_A 115 LCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVFIMAATNRP-DIIDPAILRPGRLDKTLFVGLP-PPA 181 (274)
T ss_dssp TCC---------CTTHHHHHHHHHHTCC-----------STTCEEEEEEESCG-GGSCHHHHSTTSSCEEEECCSC-CHH
T ss_pred hhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEEEEeecCCh-hhCCHhhcCcccCCeEEEeCCc-CHH
Confidence 421 23455555555421 12346677888843 458999998 99999999999 567
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH---cCCCCCchhHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAE---LNVDGLRGDIVSNRAAK 318 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~---~~~~s~R~~~~ll~~a~ 318 (369)
.+..|++.... . .....++.++ .+..++.. .|+ |...+..+++.|.
T Consensus 182 ~r~~il~~~~~---------------------------~-~~~~~~~~~~--~~~~la~~~~~~g~-sgadl~~l~~~a~ 230 (274)
T 2x8a_A 182 DRLAILKTITK---------------------------N-GTKPPLDADV--NLEAIAGDLRCDCY-TGADLSALVREAS 230 (274)
T ss_dssp HHHHHHHHHTT---------------------------T-TBTTBBCTTC--CHHHHHTCSGGGSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---------------------------c-ccCCCCcccc--CHHHHHHhhccCCc-CHHHHHHHHHHHH
Confidence 77777653210 0 0011111111 02223322 255 6677777777777
Q ss_pred HHHHHc-----------CCCCCCHHHHHHHHhHHhc
Q 017575 319 ALAALK-----------GRDKVSAEDIATVMPNCLR 343 (369)
Q Consensus 319 a~A~l~-----------~~~~v~~~~i~~a~~~vl~ 343 (369)
..|..+ +...|+.+|+.+|+..+-.
T Consensus 231 ~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 231 ICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp HHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred HHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 666532 2336899999999986544
No 58
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.51 E-value=8.8e-14 Score=135.62 Aligned_cols=216 Identities=21% Similarity=0.280 Sum_probs=130.7
Q ss_pred CCCCCccccChHHHHHHhhhhhc---cC---------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVI---DP---------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPED 98 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~---~~---------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 98 (369)
+...|++++|+++++..+...+. .+ ...+++|+||||||||+|++++++.+... +..+ +
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~-------~i~i--~ 96 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP-------FITA--S 96 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC-------EEEE--E
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEE--e
Confidence 56689999999887655532221 10 01239999999999999999999987411 1000 0
Q ss_pred cchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhh---cCCCeEEEeCCCCC
Q 017575 99 PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAK---ANRGILYVDEVNLL 175 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---a~~~vl~lDE~~~l 175 (369)
+ +++. .......... ....+.. ..|+++|+||++.+
T Consensus 97 g----~~~~-------------------~~~~g~~~~~------------------v~~lfq~a~~~~p~il~IDEId~l 135 (499)
T 2dhr_A 97 G----SDFV-------------------EMFVGVGAAR------------------VRDLFETAKRHAPCIVFIDEIDAV 135 (499)
T ss_dssp G----GGGT-------------------SSCTTHHHHH------------------HHHHTTTSSSSSSCEEEEECGGGT
T ss_pred h----hHHH-------------------HhhhhhHHHH------------------HHHHHHHHHhcCCCEEEEehHHHH
Confidence 0 0000 0000000000 0011111 23689999999655
Q ss_pred C-----------H---HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCC
Q 017575 176 D-----------D---HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRD 239 (369)
Q Consensus 176 ~-----------~---~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~ 239 (369)
. . ...+.|+..|+.+. ....+.+++++|.++ .+++++++ ||+..+.++.| +
T Consensus 136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~-~LD~aLlr~gRfdr~i~i~~P-d 202 (499)
T 2dhr_A 136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-ILDPALLRPGRFDRQIAIDAP-D 202 (499)
T ss_dssp CCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG-GSCTTTSSTTSSCCEEECCCC-C
T ss_pred HHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh-hcCcccccccccceEEecCCC-C
Confidence 3 2 23445555554321 134577888888543 48999998 89888999988 5
Q ss_pred HHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHc-CCCCCchhHHHHHHH
Q 017575 240 AELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAEL-NVDGLRGDIVSNRAA 317 (369)
Q Consensus 240 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~-~~~s~R~~~~ll~~a 317 (369)
.+.+..|+... .+...+++++ +.. ++... |. +.|.+.+++..|
T Consensus 203 ~~~R~~IL~~~-------------------------------~~~~~l~~dv~l~~---lA~~t~G~-~gadL~~lv~~A 247 (499)
T 2dhr_A 203 VKGREQILRIH-------------------------------ARGKPLAEDVDLAL---LAKRTPGF-VGADLENLLNEA 247 (499)
T ss_dssp HHHHHHHHHHT-------------------------------TSSSCCCCSSTTHH---HHTTSCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------HhcCCCChHHHHHH---HHHhcCCC-CHHHHHHHHHHH
Confidence 56666665421 1122333332 222 33332 33 558999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHhHHhcc
Q 017575 318 KALAALKGRDKVSAEDIATVMPNCLRH 344 (369)
Q Consensus 318 ~a~A~l~~~~~v~~~~i~~a~~~vl~~ 344 (369)
...|..+++..|+.+|+..++..+..+
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 888888888899999999999988765
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.51 E-value=8.6e-14 Score=128.51 Aligned_cols=213 Identities=20% Similarity=0.161 Sum_probs=129.0
Q ss_pred CCCCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCccee-ecCCCCCCCCCCcchhhhhhh
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKV-VVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 107 (369)
.+| ..|++++|++.+++.+...+......+++|+||+|+|||++++.++..+..... .....++...
T Consensus 11 ~~p-~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----------- 78 (319)
T 2chq_A 11 YRP-RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD----------- 78 (319)
T ss_dssp TSC-SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-----------
T ss_pred cCC-CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-----------
Confidence 344 479999999999998888774322224999999999999999999988621100 0000000000
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
. ......... ...+.. ...+..+++.+++|||++.++...++.|+..+
T Consensus 79 -----------------~--~~~~~~~~~-------~~~~~~------~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l 126 (319)
T 2chq_A 79 -----------------E--RGIDVVRHK-------IKEFAR------TAPIGGAPFKIIFLDEADALTADAQAALRRTM 126 (319)
T ss_dssp -----------------T--TCTTTSSHH-------HHHHHH------SCCSSSCCCEEEEEETGGGSCHHHHHTTGGGT
T ss_pred -----------------c--cChHHHHHH-------HHHHHh------cCCCCCCCceEEEEeCCCcCCHHHHHHHHHHH
Confidence 0 000000000 000000 00111245679999999999999999998888
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAE 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 267 (369)
++ .+..+.+|+++|.. ..+.+++.+||.. +.+.+++ .+....++...
T Consensus 127 e~-------------~~~~~~~i~~~~~~-~~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~----------------- 173 (319)
T 2chq_A 127 EM-------------YSKSCRFILSCNYV-SRIIEPIQSRCAV-FRFKPVP-KEAMKKRLLEI----------------- 173 (319)
T ss_dssp SS-------------SSSSEEEEEEESCG-GGSCHHHHTTCEE-EECCCCC-HHHHHHHHHHH-----------------
T ss_pred Hh-------------cCCCCeEEEEeCCh-hhcchHHHhhCeE-EEecCCC-HHHHHHHHHHH-----------------
Confidence 65 13456677777743 4689999999974 8888885 44444443311
Q ss_pred HHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 268 QAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.....+.++++++..|...+ +. +.|.+.+.+..+. .. ...|+.+++.+++.
T Consensus 174 ------------~~~~~~~i~~~~l~~l~~~~---~G-~~r~~~~~l~~~~---~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 174 ------------CEKEGVKITEDGLEALIYIS---GG-DFRKAINALQGAA---AI--GEVVDADTIYQITA 224 (319)
T ss_dssp ------------HHTTCCCBCHHHHHHHHHTT---TT-CHHHHHHHHHHHH---HS--SSCBCHHHHHHHTT
T ss_pred ------------HHHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---Hc--CCCCCHHHHHHHHC
Confidence 11234678999888777544 22 5677776665443 22 34588888776644
No 60
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=7.5e-14 Score=135.02 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=94.6
Q ss_pred CCCeEEEeCCCCCCH--HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhc--cceeecC
Q 017575 163 NRGILYVDEVNLLDD--HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFG--MHAQVGT 236 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~--~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~--~~i~~~~ 236 (369)
+++++||||++.+.. ..+..|+..++.. .. .....+++|.++.. ..+.+++++||. ..+.+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l----~~-------~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNEL----HD-------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHH----HT-------TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHH----HH-------CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 578999999988765 7888888888641 00 11234445554322 127899999995 5588888
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
| +.+.+..|+.... .. ..+.++++++.+|+..+ +. +.|.+..++..
T Consensus 263 p-~~e~r~~iL~~~~-------------------------~~----~~~~i~~e~l~~la~~~---~g-n~R~l~~~L~~ 308 (440)
T 2z4s_A 263 P-DEETRKSIARKML-------------------------EI----EHGELPEEVLNFVAENV---DD-NLRRLRGAIIK 308 (440)
T ss_dssp C-CHHHHHHHHHHHH-------------------------HH----HTCCCCTTHHHHHHHHC---CS-CHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHH-------------------------HH----cCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHH
Confidence 8 4566666655321 11 14678888888877654 22 67999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 317 AKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 317 a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
+.+.|...++ .|+.+++++++....
T Consensus 309 ~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 309 LLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 9999998876 599999999988765
No 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=2.7e-13 Score=128.15 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=133.6
Q ss_pred CCCCCCCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhh
Q 017575 29 QRPVYPFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 29 ~~~~~~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (369)
.+|. .|.+++|++.+++.+...+......+ ++|+||+|+|||++++.++..+.........++.. +. .+.
T Consensus 10 ~rp~-~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~----~~----~~~ 80 (373)
T 1jr3_A 10 WRPQ-TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV----CD----NCR 80 (373)
T ss_dssp TCCC-STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS----SH----HHH
T ss_pred hCCC-chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc----cH----HHH
Confidence 3444 78899999999888877774323334 89999999999999999998874221110111110 00 000
Q ss_pred hhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHH
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSA 187 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l 187 (369)
. +..+... .++.+.... ..+.-++......- ... ...+++.+++|||++.++...++.|+..+
T Consensus 81 ~-~~~~~~~-------~~~~~~~~~----~~~~~~~~~l~~~~----~~~-~~~~~~~vliiDe~~~l~~~~~~~Ll~~l 143 (373)
T 1jr3_A 81 E-IEQGRFV-------DLIEIDAAS----RTKVEDTRDLLDNV----QYA-PARGRFKVYLIDEVHMLSRHSFNALLKTL 143 (373)
T ss_dssp H-HHTSCCS-------SCEEEETTC----SCCSSCHHHHHHHT----TSC-CSSSSSEEEEEECGGGSCHHHHHHHHHHH
T ss_pred H-HhccCCC-------ceEEecccc----cCCHHHHHHHHHHH----hhc-cccCCeEEEEEECcchhcHHHHHHHHHHH
Confidence 0 0000000 000000000 00000000000000 000 01234679999999999999999999999
Q ss_pred hcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHH
Q 017575 188 ASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAE 267 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 267 (369)
++ .+.++.+|+++|. ...+.+++.+||. .+.+.+++ .+....++...
T Consensus 144 e~-------------~~~~~~~Il~~~~-~~~l~~~l~sr~~-~i~~~~l~-~~~~~~~l~~~----------------- 190 (373)
T 1jr3_A 144 EE-------------PPEHVKFLLATTD-PQKLPVTILSRCL-QFHLKALD-VEQIRHQLEHI----------------- 190 (373)
T ss_dssp HS-------------CCSSEEEEEEESC-GGGSCHHHHTTSE-EEECCCCC-HHHHHHHHHHH-----------------
T ss_pred hc-------------CCCceEEEEEeCC-hHhCcHHHHhhee-EeeCCCCC-HHHHHHHHHHH-----------------
Confidence 86 2345666666663 3358899999995 48888884 45444554321
Q ss_pred HHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 268 QAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
.... .+.+++++...|.+.+ +. ++|.+.+++..+... +...|+.+++.+++.
T Consensus 191 --------~~~~----~~~~~~~a~~~l~~~~---~G-~~r~~~~~l~~~~~~----~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 191 --------LNEE----HIAHEPRALQLLARAA---EG-SLRDALSLTDQAIAS----GDGQVSTQAVSAMLG 242 (373)
T ss_dssp --------HHHH----TCCBCHHHHHHHHHHS---SS-CHHHHHHHHHHHHHH----TTTCBCHHHHHHHTT
T ss_pred --------HHHc----CCCCCHHHHHHHHHHC---CC-CHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 1111 3578888888777765 22 678888877665322 245688888877654
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.48 E-value=1.7e-13 Score=122.83 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=83.4
Q ss_pred CCCeEEEeCCCCCC-----------H---HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--
Q 017575 163 NRGILYVDEVNLLD-----------D---HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD-- 226 (369)
Q Consensus 163 ~~~vl~lDE~~~l~-----------~---~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~-- 226 (369)
.++++++||++.+. . ...+.++..|+.+. ....+.+++++|.+ ..+++++++
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p-~~ld~~l~r~~ 175 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRP-DILDPALLRPG 175 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCG-GGSCGGGGSTT
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCc-hhCCHHHcCCC
Confidence 35799999995331 1 23345555554321 12346777888853 459999998
Q ss_pred hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHH-HHHHHHHHHHc-CC
Q 017575 227 RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDL-KVKISKVCAEL-NV 304 (369)
Q Consensus 227 R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~l~~~~~~~-~~ 304 (369)
||+..+.++.| +.+.+..|+... .+ ...+++++ +.. ++... |.
T Consensus 176 rf~~~i~i~~p-~~~~r~~il~~~---------------------------~~----~~~~~~~~~~~~---la~~~~G~ 220 (254)
T 1ixz_A 176 RFDRQIAIDAP-DVKGREQILRIH---------------------------AR----GKPLAEDVDLAL---LAKRTPGF 220 (254)
T ss_dssp SSCEEEECCSC-CHHHHHHHHHHH---------------------------HT----TSCBCTTCCHHH---HHHTCTTC
T ss_pred cCCeEEeeCCc-CHHHHHHHHHHH---------------------------Hc----CCCCCcccCHHH---HHHHcCCC
Confidence 89888999988 556666665421 01 12333322 333 33333 33
Q ss_pred CCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 305 DGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 305 ~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
+.|.+..++..|...|..++...|+.+|+.+++
T Consensus 221 -~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 221 -VGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 568999999999999998888899999999876
No 63
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.48 E-value=3e-14 Score=145.51 Aligned_cols=158 Identities=23% Similarity=0.345 Sum_probs=94.4
Q ss_pred CCCCCccccChHHHHHHhhhhhccC-------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDP-------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~-------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
|...+.++.|.+++++.+...+.-| ...++||+||||||||++|++++..+.. +|..+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v-- 542 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISI-- 542 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEEC--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEe--
Confidence 4456888999999988887665321 1123999999999999999999999842 11110
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCH
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 177 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~ 177 (369)
..+++. ....+.++..+...+. . -....|+|+||||++.+-+
T Consensus 543 ----~~~~l~-------------------s~~vGese~~vr~lF~-------------~--Ar~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 543 ----KGPELL-------------------TMWFGESEANVREIFD-------------K--ARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp ----CHHHHH-------------------TTTCSSCHHHHHHHHH-------------H--HHTTCSEEEECSCGGGCC-
T ss_pred ----ccchhh-------------------ccccchHHHHHHHHHH-------------H--HHHcCCceeechhhhHHhh
Confidence 000111 0111111111110000 0 0123588999999965422
Q ss_pred --------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 178 --------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 178 --------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
.+.+.|+..|+.- .....+++|+|+|. +..+++|+++ ||+.++.++.| +.+
T Consensus 585 ~R~~~~~~~~~~~~rv~~~lL~~mdg~-----------~~~~~V~vi~aTN~-p~~lD~AllRpgRfd~~i~v~lP-d~~ 651 (806)
T 3cf2_A 585 ARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVFIIGATNR-PDIIDPAILRPGRLDQLIYIPLP-DEK 651 (806)
T ss_dssp -------------CHHHHHHHHHHHSS-----------CSSSSEEEECC-CC-SSSSCHHHHSTTTSCCEEEC------C
T ss_pred ccCCCCCCCchHHHHHHHHHHHHHhCC-----------CCCCCEEEEEeCCC-chhCCHhHcCCCcceEEEEECCc-CHH
Confidence 2567788888741 11246889999994 4569999999 99999999998 556
Q ss_pred HHHHHHH
Q 017575 242 LRVKIVE 248 (369)
Q Consensus 242 ~~~~il~ 248 (369)
.+..|++
T Consensus 652 ~R~~il~ 658 (806)
T 3cf2_A 652 SRVAILK 658 (806)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 6666654
No 64
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.47 E-value=1.8e-13 Score=133.63 Aligned_cols=215 Identities=19% Similarity=0.244 Sum_probs=131.9
Q ss_pred CCCccccChHHHHHHhhhhhcc-------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCc
Q 017575 33 YPFTAIVGQEEMKLCLLLNVID-------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDP 99 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~-------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 99 (369)
..|.+++|++.++..+...+.. ....++||+||||||||++|++++..+.. +|.. .++
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~--vn~ 271 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFL--ING 271 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEE--EEH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEE--EEc
Confidence 4788999998887776554421 12334999999999999999999988731 1100 001
Q ss_pred chhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhh---hcCCCeEEEeCCCCC-
Q 017575 100 EAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLA---KANRGILYVDEVNLL- 175 (369)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~a~~~vl~lDE~~~l- 175 (369)
..+.+.+. +.....+ .+.+. ...|+++||||++.+
T Consensus 272 ~~l~~~~~-----------------------g~~~~~~------------------~~~f~~A~~~~p~iLfLDEId~l~ 310 (489)
T 3hu3_A 272 PEIMSKLA-----------------------GESESNL------------------RKAFEEAEKNAPAIIFIDELDAIA 310 (489)
T ss_dssp HHHHTSCT-----------------------THHHHHH------------------HHHHHHHHHTCSEEEEEESHHHHC
T ss_pred hHhhhhhc-----------------------chhHHHH------------------HHHHHHHHhcCCcEEEecchhhhc
Confidence 01100000 0000000 11111 124679999999433
Q ss_pred ----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHH
Q 017575 176 ----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELR 243 (369)
Q Consensus 176 ----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~ 243 (369)
+..+++.|+..|+... .+.++.+|+|+|.. ..+++++.+ ||...+.++.| ..+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn~~-~~Ld~al~r~gRf~~~i~i~~P-~~~eR 377 (489)
T 3hu3_A 311 PKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRP-NSIDPALRRFGRFDREVDIGIP-DATGR 377 (489)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEESCG-GGBCGGGGSTTSSCEEEECCCC-CHHHH
T ss_pred cccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecCCc-cccCHHHhCCCcCceEEEeCCC-CHHHH
Confidence 3368899999998521 23478899999964 458999998 89888888888 56666
Q ss_pred HHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHc-CCCCCchhHHHHHHHHHHHH
Q 017575 244 VKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAEL-NVDGLRGDIVSNRAAKALAA 322 (369)
Q Consensus 244 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~-~~~s~R~~~~ll~~a~a~A~ 322 (369)
..|+..... ...+..+. .+..++... |. +.+.+..+++.|...|.
T Consensus 378 ~~IL~~~~~-------------------------------~~~l~~~~--~l~~la~~t~g~-s~~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 378 LEILQIHTK-------------------------------NMKLADDV--DLEQVANETHGH-VGADLAALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHTT-------------------------------TSCBCTTC--CHHHHHHTCTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------------------------------cCCCcchh--hHHHHHHHccCC-cHHHHHHHHHHHHHHHH
Confidence 667553211 11111110 122333332 34 66888888888888887
Q ss_pred HcCCC-----------------CCCHHHHHHHHhHHhcc
Q 017575 323 LKGRD-----------------KVSAEDIATVMPNCLRH 344 (369)
Q Consensus 323 l~~~~-----------------~v~~~~i~~a~~~vl~~ 344 (369)
.+..+ .|+.+|+..|+..+-..
T Consensus 424 r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 424 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp HTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred HhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 66543 47889999998876554
No 65
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.46 E-value=5.8e-13 Score=121.01 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=67.1
Q ss_pred CceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhC
Q 017575 205 ARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSL 282 (369)
Q Consensus 205 ~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 282 (369)
..+.+++++|.+ ..+++++++ ||+..+.++.| +.+.+..|+... .+
T Consensus 177 ~~~i~~a~t~~p-~~ld~~l~r~~rf~~~i~i~~p-~~~~r~~il~~~---------------------------~~--- 224 (278)
T 1iy2_A 177 TAIVVMAATNRP-DILDPALLRPGRFDRQIAIDAP-DVKGREQILRIH---------------------------AR--- 224 (278)
T ss_dssp CCEEEEEEESCT-TSSCHHHHSTTSSCCEEECCCC-CHHHHHHHHHHH---------------------------HT---
T ss_pred CCEEEEEecCCc-hhCCHhHcCCCcCCeEEEeCCc-CHHHHHHHHHHH---------------------------Hc---
Confidence 346778888854 459999998 89888999988 566666665421 01
Q ss_pred CCcccCHHH-HHHHHHHHHHc-CCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 017575 283 PAVQIDHDL-KVKISKVCAEL-NVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVM 338 (369)
Q Consensus 283 ~~~~i~~~~-~~~l~~~~~~~-~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~ 338 (369)
...+++++ +.. ++... |. +.|.+..++..|...|...+...|+.+|+.+|+
T Consensus 225 -~~~~~~~~~~~~---la~~~~G~-~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 225 -GKPLAEDVDLAL---LAKRTPGF-VGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp -TSCBCTTCCHHH---HHHTCTTC-CHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred -cCCCCcccCHHH---HHHHcCCC-CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 12333332 333 33333 33 558899999999999988888899999999886
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=9e-13 Score=121.86 Aligned_cols=211 Identities=17% Similarity=0.116 Sum_probs=129.9
Q ss_pred CCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhh
Q 017575 32 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVV 111 (369)
Q Consensus 32 ~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (369)
+..|++++|++.+++.+...+......+++|+||+|+|||++++.++..+..... ..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~----------------~~------- 73 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY----------------AD------- 73 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH----------------HH-------
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc----------------cC-------
Confidence 3478999999999888877774222234999999999999999999988631100 00
Q ss_pred ccccchhhhhccccccCCC--CCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 112 KGEELSITFSKINMVDLPL--GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.++.+.. ....+.+... ...+.... ..+..+++.+++|||++.++...++.|+..+++
T Consensus 74 ------------~~~~~~~~~~~~~~~i~~~---~~~~~~~~-----~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 133 (323)
T 1sxj_B 74 ------------GVLELNASDDRGIDVVRNQ---IKHFAQKK-----LHLPPGKHKIVILDEADSMTAGAQQALRRTMEL 133 (323)
T ss_dssp ------------HEEEECTTSCCSHHHHHTH---HHHHHHBC-----CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH
T ss_pred ------------CEEEecCccccChHHHHHH---HHHHHhcc-----ccCCCCCceEEEEECcccCCHHHHHHHHHHHhc
Confidence 0000000 0000000000 00000000 001123467999999999999999999999986
Q ss_pred CCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHH
Q 017575 190 GWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQA 269 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 269 (369)
. +....+|+++|. ...+.+++.+||.. +.+.+++ .+....++...
T Consensus 134 ~-------------~~~~~~il~~~~-~~~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~------------------- 178 (323)
T 1sxj_B 134 Y-------------SNSTRFAFACNQ-SNKIIEPLQSQCAI-LRYSKLS-DEDVLKRLLQI------------------- 178 (323)
T ss_dssp T-------------TTTEEEEEEESC-GGGSCHHHHTTSEE-EECCCCC-HHHHHHHHHHH-------------------
T ss_pred c-------------CCCceEEEEeCC-hhhchhHHHhhceE-EeecCCC-HHHHHHHHHHH-------------------
Confidence 2 245566777774 34588999999984 8888884 45454554421
Q ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Q 017575 270 KLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATVMP 339 (369)
Q Consensus 270 ~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~ 339 (369)
... ..+.+++++...|...+. . ++|.+.+++..+.. . ...|+.+++.+++.
T Consensus 179 ------~~~----~~~~~~~~~~~~l~~~~~---G-~~r~a~~~l~~~~~---~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 179 ------IKL----EDVKYTNDGLEAIIFTAE---G-DMRQAINNLQSTVA---G--HGLVNADNVFKIVD 229 (323)
T ss_dssp ------HHH----HTCCBCHHHHHHHHHHHT---T-CHHHHHHHHHHHHH---H--HSSBCHHHHHHHHT
T ss_pred ------HHH----cCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHh---c--CCCcCHHHHHHHHC
Confidence 111 135688888888887773 2 56887777765442 1 14578888877655
No 67
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.45 E-value=1.3e-13 Score=112.70 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=85.4
Q ss_pred cccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 37 AIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
+++|+......+...+.. ....+++|+||||||||++|++++....... .++. . ++..+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~----~~~v-~--~~~~~~----------- 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ----GEFV-Y--RELTPD----------- 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT----SCCE-E--EECCTT-----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC----CCEE-E--ECCCCC-----------
Confidence 467877765555443311 1233499999999999999999998874221 1110 0 000000
Q ss_pred cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCcee
Q 017575 115 ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTV 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~ 194 (369)
.. ....|.+..++++++||||++.++++.|..|+.+|...
T Consensus 64 ----------------------------------~~--~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~---- 103 (145)
T 3n70_A 64 ----------------------------------NA--PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE---- 103 (145)
T ss_dssp ----------------------------------TS--SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS----
T ss_pred ----------------------------------cc--hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc----
Confidence 00 11235566678899999999999999999999999542
Q ss_pred eecceeeeecCceEEEeecCCCC------CCCCHhHHhhhcc-ceeecC
Q 017575 195 EREGISISHPARFILIGSGNPEE------GELRPQLLDRFGM-HAQVGT 236 (369)
Q Consensus 195 ~~~~~~~~~~~~~~li~t~n~~~------~~l~~al~~R~~~-~i~~~~ 236 (369)
+.++.+|+|+|... +.+++.|..|+.. .+.+|+
T Consensus 104 ---------~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 104 ---------HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp ---------SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred ---------CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 34567889998542 3588999999865 244443
No 68
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=8.1e-14 Score=113.76 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=83.1
Q ss_pred cccChHHHHHHhhhhhcc--CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccc
Q 017575 37 AIVGQEEMKLCLLLNVID--PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGE 114 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~--~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (369)
+++|++..+..+...+.. ....+++|+||||||||++|++++.... ++.. .++..+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~--~~~~~~~~---------- 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVS--PARVEYLI---------- 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEEC--CSSTTHHH----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEE--echhhCCh----------
Confidence 357877665544333311 1233499999999999999999998763 1100 00000000
Q ss_pred cchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCcee
Q 017575 115 ELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTV 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~ 194 (369)
....|.+..++++++||||++.++++.+..|+++|+++.
T Consensus 65 --------------------------------------~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~--- 103 (143)
T 3co5_A 65 --------------------------------------DMPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE--- 103 (143)
T ss_dssp --------------------------------------HCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT---
T ss_pred --------------------------------------HhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC---
Confidence 012355566778999999999999999999999998742
Q ss_pred eecceeeeecCceEEEeecCCCCCC----CCHhHHhhhcc-ceeecC
Q 017575 195 EREGISISHPARFILIGSGNPEEGE----LRPQLLDRFGM-HAQVGT 236 (369)
Q Consensus 195 ~~~~~~~~~~~~~~li~t~n~~~~~----l~~al~~R~~~-~i~~~~ 236 (369)
+.++.+|+|+|..... +++.|.+||.. .+.+|+
T Consensus 104 ---------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 104 ---------RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp ---------TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred ---------CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 3467788888854333 55778888754 344544
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.44 E-value=2.2e-12 Score=133.21 Aligned_cols=231 Identities=19% Similarity=0.223 Sum_probs=136.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.|+.++|++..++.+...+......+++|+||||||||++++.++..+.... .+.. +..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~----v~~~------------~~~----- 242 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD----VPEV------------MAD----- 242 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTC----SCGG------------GTT-----
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCC----CChh------------hcC-----
Confidence 5788999998888777666433344599999999999999999998873211 0000 000
Q ss_pred ccchhhhhccccccCCCCCch--HhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCC---------CHHHHHH
Q 017575 114 EELSITFSKINMVDLPLGATE--DRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL---------DDHLVDV 182 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l---------~~~~~~~ 182 (369)
..++........ ....|. ....+.. ....+..+.+.++||||++.+ ..+..+.
T Consensus 243 ---------~~~~~~~~~~l~~~~~~~g~--~e~~l~~-----~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~ 306 (758)
T 1r6b_X 243 ---------CTIYSLDIGSLLAGTKYRGD--FEKRFKA-----LLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANL 306 (758)
T ss_dssp ---------CEEEECCCC---CCCCCSSC--HHHHHHH-----HHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHH
T ss_pred ---------CEEEEEcHHHHhccccccch--HHHHHHH-----HHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHH
Confidence 000000000000 000000 0000000 001112234689999999887 2233344
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCC----CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCCh
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEE----GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPK 258 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~----~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~ 258 (369)
|..++++ ..+.+|+++|+.+ ...+++|.+||.. +.++.|+ .+....|+...
T Consensus 307 L~~~l~~---------------~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~-i~v~~p~-~~e~~~il~~l-------- 361 (758)
T 1r6b_X 307 IKPLLSS---------------GKIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPS-IEETVQIINGL-------- 361 (758)
T ss_dssp HSSCSSS---------------CCCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECCCCC-HHHHHHHHHHH--------
T ss_pred HHHHHhC---------------CCeEEEEEeCchHHhhhhhcCHHHHhCceE-EEcCCCC-HHHHHHHHHHH--------
Confidence 4333332 2566788888532 2367899999985 9999884 55555665421
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHH----cCCCCCCHH
Q 017575 259 EFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAAL----KGRDKVSAE 332 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l----~~~~~v~~~ 332 (369)
...+.. ...+.++++++..+...+..+-.. .+..+++++..|.+.+.+ .+...|+.+
T Consensus 362 -------------~~~~~~----~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~ 424 (758)
T 1r6b_X 362 -------------KPKYEA----HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVA 424 (758)
T ss_dssp -------------HHHHHH----HHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHH
T ss_pred -------------HHHHHH----hcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHH
Confidence 111111 225788999999999888764221 345788888888887777 345679999
Q ss_pred HHHHHHhHHhc
Q 017575 333 DIATVMPNCLR 343 (369)
Q Consensus 333 ~i~~a~~~vl~ 343 (369)
|+..++.....
T Consensus 425 di~~~~~~~~~ 435 (758)
T 1r6b_X 425 DIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhcC
Confidence 99999887653
No 70
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.43 E-value=4.6e-13 Score=124.40 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=87.5
Q ss_pred CCCeEEEeCCCCCCH--HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhc--cceeecC
Q 017575 163 NRGILYVDEVNLLDD--HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFG--MHAQVGT 236 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~--~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~--~~i~~~~ 236 (369)
+++++||||++.++. ..+..|+.+++.. .. .....+++++++.. ..++++|.+||. ..+.+++
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~----~~-------~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTL----YL-------LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHH----HH-------TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHH----HH-------CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 478999999988875 7788888887641 00 11234455555432 148999999995 4467766
Q ss_pred CCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 017575 237 VRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRA 316 (369)
Q Consensus 237 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~ 316 (369)
+.+....|+... + . ...+.++++++.+|...+ | +.|.+..++..
T Consensus 167 --~~~e~~~il~~~------------------------~-~----~~~~~l~~~~l~~l~~~~---g--~~r~l~~~l~~ 210 (324)
T 1l8q_A 167 --DNKTRFKIIKEK------------------------L-K----EFNLELRKEVIDYLLENT---K--NVREIEGKIKL 210 (324)
T ss_dssp --CHHHHHHHHHHH------------------------H-H----HTTCCCCHHHHHHHHHHC---S--SHHHHHHHHHH
T ss_pred --CHHHHHHHHHHH------------------------H-H----hcCCCCCHHHHHHHHHhC---C--CHHHHHHHHHH
Confidence 556666665532 1 1 124688999998888776 2 56888888777
Q ss_pred HHHHH--H--HcCCCCC-CHHHHHHHHhHHhc
Q 017575 317 AKALA--A--LKGRDKV-SAEDIATVMPNCLR 343 (369)
Q Consensus 317 a~a~A--~--l~~~~~v-~~~~i~~a~~~vl~ 343 (369)
+.+.. . +.+...| +.+++.+++...+.
T Consensus 211 ~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 211 IKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 65540 0 1223457 88999998887665
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=6e-13 Score=126.21 Aligned_cols=132 Identities=22% Similarity=0.228 Sum_probs=94.6
Q ss_pred eEEEeCCCCCCHHH-HHH-HHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhccceeecCCCCHH
Q 017575 166 ILYVDEVNLLDDHL-VDV-LLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 166 vl~lDE~~~l~~~~-~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
+++|||++.+.... +.. +..+++.. .++.+|+++|..+ ..+.+++.+||...+.++++ ..+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l-~~~ 200 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPY-DAE 200 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCC-CHH
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCC-CHH
Confidence 99999998876542 455 55555421 4677888888543 45889999998767899888 556
Q ss_pred HHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH
Q 017575 242 LRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALA 321 (369)
Q Consensus 242 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A 321 (369)
....++..+ + ........+++++++.+..++..... ++|.+.++++.|...|
T Consensus 201 ~~~~il~~~------------------------~---~~~~~~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 201 QLKFILSKY------------------------A---EYGLIKGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHH------------------------H---HHTSCTTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH------------------------H---HhhcccCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHh
Confidence 565665532 1 11223467889999999998863322 6799999999988877
Q ss_pred HHcCCCCCCHHHHHHHHhHHh
Q 017575 322 ALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 322 ~l~~~~~v~~~~i~~a~~~vl 342 (369)
. +...|+.+|+..++....
T Consensus 253 ~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 253 S--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp T--SSSCCCHHHHHHHHHHHH
T ss_pred c--CCCccCHHHHHHHHHHHh
Confidence 6 667899999999987765
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.41 E-value=1.2e-12 Score=135.24 Aligned_cols=208 Identities=17% Similarity=0.172 Sum_probs=124.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.++.++|++..++.+...+......+++|+||||||||+++++++..+.... .+.... .
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~----~p~~l~--~--------------- 236 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNE----VPEILR--D--------------- 236 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSC----SCTTTS--S---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCC----CChhhc--C---------------
Confidence 6788999999988887776433445699999999999999999999873211 010000 0
Q ss_pred ccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 017575 114 EELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNT 193 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~ 193 (369)
..++.+... ....|.+. ... .-.........++|+||| ...+.++.|+..|++
T Consensus 237 ---------~~~~~~~~g---~~~~G~~e------~~l-~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~---- 289 (758)
T 3pxi_A 237 ---------KRVMTLDMG---TKYRGEFE------DRL-KKVMDEIRQAGNIILFID----AAIDASNILKPSLAR---- 289 (758)
T ss_dssp ---------CCEECC-------------C------TTH-HHHHHHHHTCCCCEEEEC----C--------CCCTTS----
T ss_pred ---------CeEEEeccc---ccccchHH------HHH-HHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhc----
Confidence 000000000 00000000 000 000011222467899999 444566666666554
Q ss_pred eeecceeeeecCceEEEeecCCCCC----CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHH
Q 017575 194 VEREGISISHPARFILIGSGNPEEG----ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQA 269 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~li~t~n~~~~----~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 269 (369)
..+.+|+++|+.++ .+++++.+||.. +.+++| +.+....|+....
T Consensus 290 -----------~~v~~I~at~~~~~~~~~~~d~al~rRf~~-i~v~~p-~~~~~~~il~~~~------------------ 338 (758)
T 3pxi_A 290 -----------GELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQP-SVDESIQILQGLR------------------ 338 (758)
T ss_dssp -----------SSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCC-CHHHHHHHHHHTT------------------
T ss_pred -----------CCEEEEeCCChHHHHHHhhccHHHHhhCcE-EEeCCC-CHHHHHHHHHHHH------------------
Confidence 25678999997763 589999999976 999999 5666667765321
Q ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCC--CCCchhHHHHHHHHHHHHHcCCC
Q 017575 270 KLQQQIASARSSLPAVQIDHDLKVKISKVCAELNV--DGLRGDIVSNRAAKALAALKGRD 327 (369)
Q Consensus 270 ~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~--~s~R~~~~ll~~a~a~A~l~~~~ 327 (369)
........+.++++++..+..++..+-. ..++.+++++..|.+.+.+....
T Consensus 339 -------~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~ 391 (758)
T 3pxi_A 339 -------DRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFT 391 (758)
T ss_dssp -------TTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccC
Confidence 1111234678999999999998886522 14578889999998888876543
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=3.9e-12 Score=120.29 Aligned_cols=242 Identities=14% Similarity=0.152 Sum_probs=139.8
Q ss_pred CCCccccChHHHHHHhhhhhcc---CCCC-eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcch--hhhhh
Q 017575 33 YPFTAIVGQEEMKLCLLLNVID---PKIG-GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEA--MGIEV 106 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~---~~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 106 (369)
+.+..++|++..++.+...+.. ...+ .++|+||+|+|||++++.+++.+..... ..+.....++.. ....+
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~---~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL---GKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC---SSCEEEEEEHHHHCSHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CCceEEEEECCCCCCHHHH
Confidence 3456789999888777665531 1223 3999999999999999999988743210 000000000000 00011
Q ss_pred hhhhhccccchhhhhccccccCC-CCCchHhhhcccchhHHhhhcccccccchhh-hcCCCeEEEeCCCCCC----HHHH
Q 017575 107 RESVVKGEELSITFSKINMVDLP-LGATEDRVCGTIDIEKALTEGVKAFEPGLLA-KANRGILYVDEVNLLD----DHLV 180 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~a~~~vl~lDE~~~l~----~~~~ 180 (369)
...+... + .. ..+ ........... + ...+. ...+.+++|||++.+. ...+
T Consensus 94 ~~~i~~~--l-------~~-~~~~~~~~~~~~~~~-------------l-~~~l~~~~~~~vlilDE~~~l~~~~~~~~l 149 (386)
T 2qby_A 94 LADLLES--L-------DV-KVPFTGLSIAELYRR-------------L-VKAVRDYGSQVVIVLDEIDAFVKKYNDDIL 149 (386)
T ss_dssp HHHHTTT--T-------SC-CCCSSSCCHHHHHHH-------------H-HHHHHTCCSCEEEEEETHHHHHHSSCSTHH
T ss_pred HHHHHHH--h-------CC-CCCCCCCCHHHHHHH-------------H-HHHHhccCCeEEEEEcChhhhhccCcCHHH
Confidence 1100000 0 00 000 00000000000 0 00011 1236799999997654 4566
Q ss_pred HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC--CCCCHhHHhhhcc-ceeecCCCCHHHHHHHHHHhhhccCCC
Q 017575 181 DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE--GELRPQLLDRFGM-HAQVGTVRDAELRVKIVEERARFDKNP 257 (369)
Q Consensus 181 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~--~~l~~al~~R~~~-~i~~~~~~~~~~~~~il~~~~~~~~~~ 257 (369)
..|+..++.. ...++.+|+++|..+ ..+.+.+.+||.. .+.++++ ..+....++...
T Consensus 150 ~~l~~~~~~~------------~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l-~~~~~~~il~~~------- 209 (386)
T 2qby_A 150 YKLSRINSEV------------NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPY-NAEELEDILTKR------- 209 (386)
T ss_dssp HHHHHHHHSC------------CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCC-CHHHHHHHHHHH-------
T ss_pred HHHhhchhhc------------CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCC-CHHHHHHHHHHH-------
Confidence 6777666541 123567777877433 3477889999853 5888888 455555554422
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 017575 258 KEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGRDKVSAEDIATV 337 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~~~v~~~~i~~a 337 (369)
+ ........+++++..++..++..... ++|.+.+++..+...|...+...|+.+|+..+
T Consensus 210 -----------------~---~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 210 -----------------A---QMAFKPGVLPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp -----------------H---HHHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred -----------------H---HhhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 1 11223467899999999998864322 67999999999998888888899999999998
Q ss_pred HhHHh
Q 017575 338 MPNCL 342 (369)
Q Consensus 338 ~~~vl 342 (369)
+..+.
T Consensus 269 ~~~~~ 273 (386)
T 2qby_A 269 KEEIE 273 (386)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.38 E-value=4.7e-13 Score=136.69 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=54.7
Q ss_pred CCCeEEEeCCCCCC-----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhc
Q 017575 163 NRGILYVDEVNLLD-----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFG 229 (369)
Q Consensus 163 ~~~vl~lDE~~~l~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~ 229 (369)
.|+|+||||++.+- ..+.+.|+..|+.- ....++.+|+++|. +..++++|++ ||+
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-----------~~~~~V~VIaaTN~-~d~LD~ALrR~GRFd 364 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVIVMAATNR-PNSIDPALRRFGRFD 364 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-----------CGGGCEEEEEECSS-TTTSCTTTTSTTSSC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-----------cccCCEEEEEecCC-hhhcCHHHhCCcccc
Confidence 58899999996543 23567777777641 11236888999994 3469999999 999
Q ss_pred cceeecCCCCHHHHHHHHH
Q 017575 230 MHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 230 ~~i~~~~~~~~~~~~~il~ 248 (369)
..|.++.| +.+.+..|++
T Consensus 365 ~~I~i~~P-d~~~R~~IL~ 382 (806)
T 3cf2_A 365 REVDIGIP-DATGRLEILQ 382 (806)
T ss_dssp EEEECCCC-CHHHHHHHHH
T ss_pred eEEecCCC-CHHHHHHHHH
Confidence 99999999 6777877765
No 75
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2.9e-12 Score=126.50 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=118.7
Q ss_pred cCCCCCCCccccChHHHHHHhhhhhcc-----------------CCCCeeEEecCCCCChhHHHHHHHhccCcceeecCC
Q 017575 28 SQRPVYPFTAIVGQEEMKLCLLLNVID-----------------PKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGD 90 (369)
Q Consensus 28 ~~~~~~~~~~i~G~~~~~~~l~~~l~~-----------------~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~ 90 (369)
+.+|. .|++++|++.+++.+...+.. +....++|+||||||||++|++++..+...-.
T Consensus 32 kyrP~-~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i---- 106 (516)
T 1sxj_A 32 KYAPT-NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL---- 106 (516)
T ss_dssp HTCCS-SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE----
T ss_pred ccCCC-CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE----
Confidence 34444 899999999887777655531 01134999999999999999999998832110
Q ss_pred CCCCCCCCc-chhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEE
Q 017575 91 PYNSDPEDP-EAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYV 169 (369)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~l 169 (369)
.++...... ......+...... . .+.+.+ .. .........++.++||
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~-------------------~---~~~~~~------~~----~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDN-------------------M---SVVGYF------KH----NEEAQNLNGKHFVIIM 154 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTB-------------------C---CSTTTT------TC--------CCSSTTSEEEEE
T ss_pred EEeCCCcchHHHHHHHHHHHhcc-------------------c---cHHHHH------hh----hhhhhhccCCCeEEEE
Confidence 011100000 0000000000000 0 000000 00 0000112245679999
Q ss_pred eCCCCCCHHH---HHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHHHHHH
Q 017575 170 DEVNLLDDHL---VDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKI 246 (369)
Q Consensus 170 DE~~~l~~~~---~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~~~~i 246 (369)
||++.+.... ...|+.++++.. ..+.++++.. ... ..+++.+|+. .+.+++|+ .+....+
T Consensus 155 DEid~l~~~~~~~l~~L~~~l~~~~-------------~~iIli~~~~-~~~-~l~~l~~r~~-~i~f~~~~-~~~~~~~ 217 (516)
T 1sxj_A 155 DEVDGMSGGDRGGVGQLAQFCRKTS-------------TPLILICNER-NLP-KMRPFDRVCL-DIQFRRPD-ANSIKSR 217 (516)
T ss_dssp CSGGGCCTTSTTHHHHHHHHHHHCS-------------SCEEEEESCT-TSS-TTGGGTTTSE-EEECCCCC-HHHHHHH
T ss_pred ECCCccchhhHHHHHHHHHHHHhcC-------------CCEEEEEcCC-CCc-cchhhHhceE-EEEeCCCC-HHHHHHH
Confidence 9998886643 477778776521 2333333322 222 2346766665 58888884 4444444
Q ss_pred HHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHcCC
Q 017575 247 VEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALKGR 326 (369)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~~~ 326 (369)
+.. +.... .+.++++++..|.+.+. . +.|.+++++..+.. +.
T Consensus 218 L~~-------------------------i~~~~----~~~i~~~~l~~la~~s~---G-diR~~i~~L~~~~~-----~~ 259 (516)
T 1sxj_A 218 LMT-------------------------IAIRE----KFKLDPNVIDRLIQTTR---G-DIRQVINLLSTIST-----TT 259 (516)
T ss_dssp HHH-------------------------HHHHH----TCCCCTTHHHHHHHHTT---T-CHHHHHHHHTHHHH-----HS
T ss_pred HHH-------------------------HHHHc----CCCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHh-----cC
Confidence 331 11111 35688888888776652 2 56888777765432 34
Q ss_pred CCCCHHHHHHHHh
Q 017575 327 DKVSAEDIATVMP 339 (369)
Q Consensus 327 ~~v~~~~i~~a~~ 339 (369)
..|+.+++..++.
T Consensus 260 ~~It~~~v~~~~~ 272 (516)
T 1sxj_A 260 KTINHENINEISK 272 (516)
T ss_dssp SCCCTTHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 5688888877765
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.8e-12 Score=119.18 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=91.5
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhcc-ceeecCCC
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFGM-HAQVGTVR 238 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~~-~i~~~~~~ 238 (369)
.+.|++|||++.+. .++.|+.+++-. .. ....+.+|+++|..+. .+++++.+||.. .+.++++
T Consensus 132 ~~~ii~lDE~d~l~--~q~~L~~l~~~~--~~--------~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pY- 198 (318)
T 3te6_A 132 RKTLILIQNPENLL--SEKILQYFEKWI--SS--------KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKV- 198 (318)
T ss_dssp CEEEEEEECCSSSC--CTHHHHHHHHHH--HC--------SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCC-
T ss_pred CceEEEEecHHHhh--cchHHHHHHhcc--cc--------cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCC-
Confidence 45699999999887 566666665410 00 1236788888885432 144566889864 4665555
Q ss_pred CHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhh------------------------C------CCcccC
Q 017575 239 DAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSS------------------------L------PAVQID 288 (369)
Q Consensus 239 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------~------~~~~i~ 288 (369)
+.++...|+.++.. ..... . ..+.++
T Consensus 199 t~~el~~Il~~Rl~------------------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (318)
T 3te6_A 199 DKNELQQMIITRLK------------------------SLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN 254 (318)
T ss_dssp CHHHHHHHHHHHHH------------------------HHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred CHHHHHHHHHHHHH------------------------hhhccccccccccccccccccccccccccccccccccccccC
Confidence 78888888776531 11100 0 023689
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHhHHh
Q 017575 289 HDLKVKISKVCAELNVDGLRGDIVSNRAAKALAALK---------GRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 289 ~~~~~~l~~~~~~~~~~s~R~~~~ll~~a~a~A~l~---------~~~~v~~~~i~~a~~~vl 342 (369)
++++++++..+..... ..|.+.++++.|..+|..+ |...|+.+++..++..++
T Consensus 255 ~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 255 NKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp HHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHh
Confidence 9999999987654433 6899999999999888642 223566666666665544
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.33 E-value=5.2e-12 Score=131.91 Aligned_cols=213 Identities=18% Similarity=0.223 Sum_probs=118.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKG 113 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (369)
.|+.++|++..++.+...+......+++|+||||||||++++.++..+.... .+... . ..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~----~p~~l-~-~~-------------- 227 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGD----VPEGL-K-GK-------------- 227 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTC----SCTTS-T-TC--------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCC----Cchhh-c-CC--------------
Confidence 6788999998888777666432334599999999999999999999873211 00000 0 00
Q ss_pred ccchhhhhccccccCCCCCch--HhhhcccchhHHhhhcccccccchhhh-cCCCeEEEeCCCCCC--------HHHHHH
Q 017575 114 EELSITFSKINMVDLPLGATE--DRVCGTIDIEKALTEGVKAFEPGLLAK-ANRGILYVDEVNLLD--------DHLVDV 182 (369)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~g~~~~-a~~~vl~lDE~~~l~--------~~~~~~ 182 (369)
.++.+...... ....| +....+.. .. ..+.. ..+.|+||||++.+. .+..+.
T Consensus 228 ----------~~~~l~~~~l~~g~~~~g--~~~~~l~~----~~-~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~ 290 (854)
T 1qvr_A 228 ----------RIVSLQMGSLLAGAKYRG--EFEERLKA----VI-QEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNM 290 (854)
T ss_dssp ----------EEEEECC-------------CHHHHHHH----HH-HHHHTTCSSEEEEECCC------------------
T ss_pred ----------eEEEeehHHhhccCccch--HHHHHHHH----HH-HHHHhcCCCeEEEEecHHHHhccCCccchHHHHHH
Confidence 00000000000 00000 00000000 00 00111 135699999999886 445566
Q ss_pred HHHHHhcCCceeeecceeeeecCceEEEeecCCCCC---CCCHhHHhhhccceeecCCCCHHHHHHHHHHhhhccCCChH
Q 017575 183 LLDSAASGWNTVEREGISISHPARFILIGSGNPEEG---ELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKE 259 (369)
Q Consensus 183 L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~---~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~ 259 (369)
|..+++.+ .+.+|+++|+.+. .++++|.+||.. +.+++|+ .+....|+...
T Consensus 291 L~~~l~~~---------------~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~-~~e~~~iL~~~--------- 344 (854)
T 1qvr_A 291 LKPALARG---------------ELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPT-VEETISILRGL--------- 344 (854)
T ss_dssp -HHHHHTT---------------CCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCC-HHHHHHHHHHH---------
T ss_pred HHHHHhCC---------------CeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCC-HHHHHHHHHhh---------
Confidence 77777653 3457777775432 478999999996 9999994 56566665421
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHHHHHcC
Q 017575 260 FRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVD--GLRGDIVSNRAAKALAALKG 325 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--s~R~~~~ll~~a~a~A~l~~ 325 (369)
.........+.++++++..+..++..+-.. .++.+++++..|.+.+.+..
T Consensus 345 ----------------~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~ 396 (854)
T 1qvr_A 345 ----------------KEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMAL 396 (854)
T ss_dssp ----------------HHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------hhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhc
Confidence 111112336788999999999988765321 35678888888888777753
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.30 E-value=2.7e-12 Score=117.45 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=49.4
Q ss_pred cCCCeEEEeCCCCCCH-------------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--
Q 017575 162 ANRGILYVDEVNLLDD-------------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD-- 226 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~-------------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~-- 226 (369)
..++|+||||++.+.+ .+++.|+++|+.....-...........++.+|+|+|.. ..+++++++
T Consensus 98 ~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-~~ld~al~R~~ 176 (293)
T 3t15_A 98 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-STLYAPLIRDG 176 (293)
T ss_dssp SSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC-CC--CHHHHHH
T ss_pred CCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc-ccCCHHHhCCC
Confidence 3688999999976544 356899999985432211001112223568899999954 458999996
Q ss_pred hhccceeecCCCCHHHHHHHHH
Q 017575 227 RFGMHAQVGTVRDAELRVKIVE 248 (369)
Q Consensus 227 R~~~~i~~~~~~~~~~~~~il~ 248 (369)
||+..+.+ | +.+.+..|+.
T Consensus 177 R~d~~i~~--P-~~~~r~~Il~ 195 (293)
T 3t15_A 177 RMEKFYWA--P-TREDRIGVCT 195 (293)
T ss_dssp HEEEEEEC--C-CHHHHHHHHH
T ss_pred CCceeEeC--c-CHHHHHHHHH
Confidence 88765653 4 6777777766
No 79
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.26 E-value=6.9e-12 Score=106.38 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=40.6
Q ss_pred CCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 33 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 33 ~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|+.++|++..++.+...+.....++++|+||+|+|||++++.++..+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 36888999999888887776432334599999999999999999998874
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.25 E-value=5.5e-12 Score=106.64 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|..++|++..++.+...+.....++++|+||+|||||++++.++..+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999998888877776432344599999999999999999998874
No 81
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.22 E-value=1.6e-11 Score=111.05 Aligned_cols=113 Identities=14% Similarity=0.242 Sum_probs=69.6
Q ss_pred cCCCeEEEeCCCCC----------CHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCH-hHHhhhcc
Q 017575 162 ANRGILYVDEVNLL----------DDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRP-QLLDRFGM 230 (369)
Q Consensus 162 a~~~vl~lDE~~~l----------~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~-al~~R~~~ 230 (369)
.+++++||||++.+ ....++.|...++.. ...+..+.+|+|+|... .+++ .+.+||..
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~----------~~~~~~~~ii~ttn~~~-~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA----------PPQGRKLLIIGTTSRKD-VLQEMEMLNAFST 191 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC----------CSTTCEEEEEEEESCHH-HHHHTTCTTTSSE
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCc----------cCCCCCEEEEEecCChh-hcchhhhhcccce
Confidence 34679999998765 445556666655431 11234678899999532 2444 57889988
Q ss_pred ceeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCC-CCCch
Q 017575 231 HAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNV-DGLRG 309 (369)
Q Consensus 231 ~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~-~s~R~ 309 (369)
.+.+++++.++....++.. ...++++.+..|...+..+.+ .+.|.
T Consensus 192 ~i~~p~l~~r~~i~~i~~~----------------------------------~~~~~~~~~~~l~~~~~g~~~~g~ir~ 237 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALEL----------------------------------LGNFKDKERTTIAQQVKGKKVWIGIKK 237 (272)
T ss_dssp EEECCCEEEHHHHHHHHHH----------------------------------HTCSCHHHHHHHHHHHTTSEEEECHHH
T ss_pred EEcCCCccHHHHHHHHHHh----------------------------------cCCCCHHHHHHHHHHhcCCCccccHHH
Confidence 8888877654443333221 124577788777777754211 13577
Q ss_pred hHHHHHHHHH
Q 017575 310 DIVSNRAAKA 319 (369)
Q Consensus 310 ~~~ll~~a~a 319 (369)
+.+++..|..
T Consensus 238 l~~~l~~a~~ 247 (272)
T 1d2n_A 238 LLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.21 E-value=4.7e-10 Score=127.06 Aligned_cols=149 Identities=16% Similarity=0.088 Sum_probs=102.0
Q ss_pred HHHhhhhhccCCCC-eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCCCcchhhhhhhhhhhccccchhhhhcc
Q 017575 45 KLCLLLNVIDPKIG-GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKI 123 (369)
Q Consensus 45 ~~~l~~~l~~~~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (369)
...+..++ ..+ ..++.||+|||||++++.+|..++ .++....++.+.....+...
T Consensus 635 ~~tl~~Al---~~~~~~~l~GpaGtGKTe~vk~LA~~lg-------~~~v~~nc~e~ld~~~lg~~-------------- 690 (2695)
T 4akg_A 635 FATLTDSL---HQKYGGCFFGPAGTGKTETVKAFGQNLG-------RVVVVFNCDDSFDYQVLSRL-------------- 690 (2695)
T ss_dssp HHHHHHHH---HTTCEEEEECCTTSCHHHHHHHHHHTTT-------CCCEEEETTSSCCHHHHHHH--------------
T ss_pred HHHHHHHH---HhCCCCcccCCCCCCcHHHHHHHHHHhC-------CcEEEEECCCCCChhHhhHH--------------
Confidence 34445555 333 389999999999999999999994 33333222222222222111
Q ss_pred ccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCCHHHHHHH-------HHHHhcCCceeee
Q 017575 124 NMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVL-------LDSAASGWNTVER 196 (369)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~~~~~~~L-------~~~l~~~~~~~~~ 196 (369)
-.|... .+.++++||+|++++++++.+ .+.+.++...+..
T Consensus 691 -------------------------------~~g~~~--~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~ 737 (2695)
T 4akg_A 691 -------------------------------LVGITQ--IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITL 737 (2695)
T ss_dssp -------------------------------HHHHHH--HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEEC
T ss_pred -------------------------------HHHHHh--cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEee
Confidence 012222 256999999999999999888 5556667666666
Q ss_pred cceeeeecCceEEEeecCCCC---CCCCHhHHhhhccceeecCCCCHHHHHHHHHHhhh
Q 017575 197 EGISISHPARFILIGSGNPEE---GELRPQLLDRFGMHAQVGTVRDAELRVKIVEERAR 252 (369)
Q Consensus 197 ~~~~~~~~~~~~li~t~n~~~---~~l~~al~~R~~~~i~~~~~~~~~~~~~il~~~~~ 252 (369)
.|.++..+.++.+++|+||.. .+++++|.+||.. +.+..| +.+....|+....+
T Consensus 738 ~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~-v~m~~P-d~~~i~ei~l~s~G 794 (2695)
T 4akg_A 738 LEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFRE-FSMKSP-QSGTIAEMILQIMG 794 (2695)
T ss_dssp SSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEE-EECCCC-CHHHHHHHHHHHHH
T ss_pred CCcEEecCCCceEEEEeCCCccCcccccHHHHhheEE-EEeeCC-CHHHHHHHHHHhcC
Confidence 688899999999999999853 2499999999975 889888 55666566544333
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.18 E-value=2.9e-10 Score=105.90 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=53.6
Q ss_pred cCCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHH
Q 017575 162 ANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAE 241 (369)
Q Consensus 162 a~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~ 241 (369)
++..|++|||++.+....++.|++.|++- +.+..+|+++|. +..+.+++.+||.. +.+.+++ .+
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~~-~~~l~~ti~SRc~~-~~~~~~~-~~ 170 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATRE-PERLLATLRSRCRL-HYLAPPP-EQ 170 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESC-GGGSCHHHHTTSEE-EECCCCC-HH
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCC-hHhCcHHHhhccee-eeCCCCC-HH
Confidence 35679999999999999999999999861 335555666553 34699999999975 8998884 55
Q ss_pred HHHHHHH
Q 017575 242 LRVKIVE 248 (369)
Q Consensus 242 ~~~~il~ 248 (369)
....++.
T Consensus 171 ~~~~~L~ 177 (334)
T 1a5t_A 171 YAVTWLS 177 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 84
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.18 E-value=5.7e-10 Score=126.41 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCCCCH------HHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC----CCCCHhHHhhhccce
Q 017575 163 NRGILYVDEVNLLDD------HLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE----GELRPQLLDRFGMHA 232 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~----~~l~~al~~R~~~~i 232 (369)
++.|+|+||+|.... ...+.|+++|+.+.+...+.+..... .++++|+|+||+. ..+++++++||.+ +
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~l~~rllRrf~v-i 1413 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIPMSERFTRHAAI-L 1413 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCCCCHHHHTTEEE-E
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCccCChhhhheeeE-E
Confidence 456999999876543 37889999999876655444444444 6799999999875 3599999999976 9
Q ss_pred eecCCCCHHHHHHHHHH
Q 017575 233 QVGTVRDAELRVKIVEE 249 (369)
Q Consensus 233 ~~~~~~~~~~~~~il~~ 249 (369)
.++.|+ .+....|+..
T Consensus 1414 ~i~~P~-~~~l~~I~~~ 1429 (2695)
T 4akg_A 1414 YLGYPS-GKSLSQIYEI 1429 (2695)
T ss_dssp ECCCCT-TTHHHHHHHH
T ss_pred EeCCCC-HHHHHHHHHH
Confidence 999995 4556667654
No 85
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.13 E-value=9.3e-12 Score=116.10 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..||...+++.+++.+ ..|. +.|+||||||||||+++|+++.++.++.. +.++.............+..+
T Consensus 9 ~ls~~y~~~~~L~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v 85 (359)
T 3fvq_A 9 HLSKSFQNTPVLNDISLSL---DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYL 85 (359)
T ss_dssp EEEEEETTEEEEEEEEEEE---CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred eEEEEECCEEEEEeeEEEE---cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEE
Confidence 3444566666777888888 7787 89999999999999999999998876321 222211000111112234555
Q ss_pred hhccccchhhhhcccccc-CC---CCCc--h---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMVD-LP---LGAT--E---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~~---~~~~--~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~ 172 (369)
+|....++..++..++.. .. .... . ..+...+++. ..+++|+++.. -+.....+|.++++|||
T Consensus 86 fQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 86 VQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp CTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 565555555444322211 00 0010 1 1111111221 22333433211 11112238999999999
Q ss_pred -CCCCHHHHHHHHHHHh
Q 017575 173 -NLLDDHLVDVLLDSAA 188 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~ 188 (369)
..+|+..+..++..+.
T Consensus 166 ts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 166 FSALDEQLRRQIREDMI 182 (359)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 8999998888876553
No 86
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.12 E-value=6.9e-12 Score=112.22 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=78.6
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++..+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..+.. +.+... ........+..++
T Consensus 21 l~~~y~~~~vl~~vsl~i---~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~---~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 21 LRKRIGKKEILKGISFEI---EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE---EPHEVRKLISYLP 94 (256)
T ss_dssp EEEEETTEEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT---CHHHHHTTEEEEC
T ss_pred EEEEECCEEEEEeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc---cHHHHhhcEEEEc
Confidence 333455545677788888 7787 99999999999999999999998875321 212111 1111112223333
Q ss_pred hccccchhhhhcccccc----CCCCC-----chHhhhcccchhHHhhhcccccccchhhh--------cCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKINMVD----LPLGA-----TEDRVCGTIDIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~- 172 (369)
|....++..++...+.. ..... ....+...+++..........++.|..++ .+|.++++|||
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 33222222122111100 00000 00111111122111111112233333222 38999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
..+|+..+..+.+++.+
T Consensus 175 s~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 175 SGLDVLNAREVRKILKQ 191 (256)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 79999999999988865
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.10 E-value=9.1e-12 Score=128.88 Aligned_cols=159 Identities=22% Similarity=0.313 Sum_probs=92.6
Q ss_pred CCCCCccccChHHHHHHhhhhhccC-------------CCCeeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCCC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDP-------------KIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE 97 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~-------------~~g~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 97 (369)
+...+++++|.+.+++.+...+..+ ..++++|+||||||||++++++++.+. .++..+.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-------~~~i~v~- 543 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIK- 543 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-------CCCCCCC-
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-------CCEEEEe-
Confidence 3446888999988888776655311 123499999999999999999999984 2221111
Q ss_pred CcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC-
Q 017575 98 DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~- 176 (369)
+..+... ..+.....+... +. ......|+++||||++.+.
T Consensus 544 -~~~l~~~-----------------------~~g~~~~~i~~~-------------f~--~a~~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 544 -GPELLTM-----------------------WFGESEANVREI-------------FD--KARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp -CSSSTTC-----------------------CTTTSSHHHHHH-------------HH--HHHHHCSBCCCCSSHHHHCC
T ss_pred -chHhhhh-----------------------hcCccHHHHHHH-------------HH--HHHhcCCeEEEEEChhhhhh
Confidence 0000000 000000000000 00 0111246899999995431
Q ss_pred -------------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHH
Q 017575 177 -------------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAE 241 (369)
Q Consensus 177 -------------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~ 241 (369)
..+++.|+..|+.. .....+++|+|+|.. ..+++++++ ||+..+.++.|+ .+
T Consensus 585 ~r~~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~~~v~vI~tTN~~-~~ld~allrpgRf~~~i~~~~p~-~~ 651 (806)
T 1ypw_A 585 ARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVFIIGATNRP-DIIDPAILRPGRLDQLIYIPLPD-EK 651 (806)
T ss_dssp TTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCBSC-GGGSCTTSSGGGTTSCCCCCCCC-CS
T ss_pred hccCCCCCcchhHHHHHHHHHHHHhcc-----------cccCCeEEEEecCCc-ccCCHHHhCccccCceeecCCCC-HH
Confidence 23445555555431 122468899999954 459999999 999889998885 45
Q ss_pred HHHHHHHH
Q 017575 242 LRVKIVEE 249 (369)
Q Consensus 242 ~~~~il~~ 249 (369)
.+..|+..
T Consensus 652 ~r~~Il~~ 659 (806)
T 1ypw_A 652 SRVAILKA 659 (806)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 56677653
No 88
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.10 E-value=6.7e-12 Score=112.70 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=82.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..+|...+++.+++.+ ..|. +.|+||||||||||+++|++++++..+.. +.++.............+..+
T Consensus 29 ~l~~~y~~~~vL~~vsl~i---~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v 105 (263)
T 2olj_A 29 QLKKSFGSLEVLKGINVHI---REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMV 105 (263)
T ss_dssp EEEEEETTEEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEE
T ss_pred eEEEEECCEEEEEeeEEEE---cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEE
Confidence 4444566655777888888 7787 89999999999999999999998875321 222210000111112233344
Q ss_pred hhccccchhhhhcccccc-----CCCCCc--h---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeC
Q 017575 110 VVKGEELSITFSKINMVD-----LPLGAT--E---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDE 171 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-----~~~~~~--~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE 171 (369)
+|....++..++...+.. ...... . ..+...+++. ..+++|+++.. .+.....+|.++++||
T Consensus 106 ~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE 185 (263)
T 2olj_A 106 FQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE 185 (263)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 444333332222211110 000000 0 1112222221 12333333211 1112223899999999
Q ss_pred C-CCCCHHHHHHHHHHHhc
Q 017575 172 V-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 172 ~-~~l~~~~~~~L~~~l~~ 189 (369)
| ..+|+..+..+.+++.+
T Consensus 186 Pts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 186 PTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp TTTTSCHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9 89999999999988865
No 89
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.08 E-value=1.6e-11 Score=110.17 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=40.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
+++.-+|...+++.+++.+ ..|. +.|+||||||||||+++|++++++..+
T Consensus 12 ~l~~~y~~~~vl~~vsl~i---~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 12 NIVKYFGEFKALDGVSISV---NKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp EEEEEETTEEEEEEECCEE---ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred eeEEEECCEeeEeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3444456555677788888 6787 899999999999999999999988753
No 90
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.08 E-value=1.7e-11 Score=114.54 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=82.6
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++..+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.++... .+ ....+..++
T Consensus 9 l~~~y~~~~vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--~~--~~r~ig~v~ 81 (359)
T 2yyz_A 9 LKKYFGKVKAVDGVSFEV---KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI--PP--KYREVGMVF 81 (359)
T ss_dssp EEEEETTEEEEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS--CG--GGTTEEEEC
T ss_pred EEEEECCEEEEeeeEEEE---cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC--Ch--hhCcEEEEe
Confidence 333455545667788888 7777 89999999999999999999998876321 2222111 11 112344445
Q ss_pred hccccchhhhhcccccc-CCC-CCc-------hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKINMVD-LPL-GAT-------EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~-~~~-~~~-------~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~- 172 (369)
|....++..++...+.. ... ... ...+...+++. ..+++|+++.. .+.....+|.+++||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 54444444333322111 000 000 11122222221 22333333211 11122238999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
..||+..+..+++.+.+
T Consensus 162 s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKH 178 (359)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 89999999888888764
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.08 E-value=1.2e-09 Score=124.53 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCeEEEeCCCCCCHH------HHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCC----CCCCHhHHhhhcccee
Q 017575 164 RGILYVDEVNLLDDH------LVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEE----GELRPQLLDRFGMHAQ 233 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~----~~l~~al~~R~~~~i~ 233 (369)
..|+|+||+|...++ ..+.|+++|+.+.....+.+..+.+ .++++|+|+||.. ..+++++.+||.+ +.
T Consensus 1375 ~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~ 1452 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LL 1452 (3245)
T ss_dssp EEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EE
T ss_pred eEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCccCCHHHHhhceE-EE
Confidence 359999999987754 8899999999876655433444444 7899999999864 2489999999987 99
Q ss_pred ecCCCCHHHHHHHHH
Q 017575 234 VGTVRDAELRVKIVE 248 (369)
Q Consensus 234 ~~~~~~~~~~~~il~ 248 (369)
+++|+ .+....|..
T Consensus 1453 i~~ps-~esL~~If~ 1466 (3245)
T 3vkg_A 1453 VDFPS-TSSLTQIYG 1466 (3245)
T ss_dssp CCCCC-HHHHHHHHH
T ss_pred eCCCC-HHHHHHHHH
Confidence 99994 555656643
No 92
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.07 E-value=9.5e-12 Score=116.84 Aligned_cols=149 Identities=20% Similarity=0.155 Sum_probs=83.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++..||...+++.+++.+ ..|. +.|+||||||||||+|+|+++.++..+. .+.++... .+ ....+..+
T Consensus 8 ~l~~~yg~~~~L~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~--~~--~~r~ig~V 80 (381)
T 3rlf_A 8 NVTKAWGEVVVSKDINLDI---HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PP--AERGVGMV 80 (381)
T ss_dssp EEEEEETTEEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC--CG--GGSCEEEE
T ss_pred eEEEEECCEEEEeeeEEEE---CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC--CH--HHCCEEEE
Confidence 3444566666777888888 7787 8999999999999999999999887632 12222111 11 11234445
Q ss_pred hhccccchhhhhcccccc----CCCCCc-----hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMVD----LPLGAT-----EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~ 172 (369)
||....++..++..++.. ...... ...+...+++. ..+++|+++.. .+.....+|.++++|||
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 555444444443322110 000000 01111122221 22333333211 11111238999999999
Q ss_pred -CCCCHHHHHHHHHHHhc
Q 017575 173 -NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~~ 189 (369)
..||+..+..+++.|.+
T Consensus 161 ts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISR 178 (381)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHH
Confidence 89999988888887764
No 93
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.06 E-value=1.5e-11 Score=114.71 Aligned_cols=147 Identities=17% Similarity=0.126 Sum_probs=80.7
Q ss_pred cccc-ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhh
Q 017575 36 TAIV-GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 36 ~~i~-G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
+..+ |...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.++... .+ ....+..++
T Consensus 21 ~~~y~g~~~vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--~~--~~r~ig~v~ 93 (355)
T 1z47_A 21 EKIYPGGARSVRGVSFQI---REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL--PP--QKRNVGLVF 93 (355)
T ss_dssp EECCTTSTTCEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC--CG--GGSSEEEEC
T ss_pred EEEEcCCCEEEeeeEEEE---CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC--Ch--hhCcEEEEe
Confidence 3344 5545677788888 6777 89999999999999999999998875321 2222111 00 112333444
Q ss_pred hccccchhhhhcccccc----CCCCCc-----hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKINMVD----LPLGAT-----EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~- 172 (369)
|....++..++..++.. ...... ...+...+++. ..+++|+++.. .+.....+|.+++||||
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 44434333332221110 000000 11122222221 22333433211 11122238999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
..||+..+..+++.|.+
T Consensus 174 s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 174 AAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp CCSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 89999999888888764
No 94
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.05 E-value=2e-11 Score=108.33 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=79.3
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchh-hhhhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAM-GIEVRESV 110 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~ 110 (369)
+.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..+.. +.+... ...... ...+..++
T Consensus 13 ~~~y~~~~vl~~vsl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~ 87 (240)
T 1ji0_A 13 HVYYGAIHAIKGIDLKV---PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN--KPAHVINRMGIALVP 87 (240)
T ss_dssp EEEETTEEEEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT--CCHHHHHHTTEEEEC
T ss_pred EEEECCeeEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC--CCHHHHHhCCEEEEe
Confidence 33445444667778887 6777 89999999999999999999998875321 222211 011111 11233334
Q ss_pred hccccchhhhhcccccc--CC-CCCc--h---Hhhhccc-chhHHhhhcccccccchhhh--------cCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKINMVD--LP-LGAT--E---DRVCGTI-DIEKALTEGVKAFEPGLLAK--------ANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~--~~-~~~~--~---~~~~~~~-~~~~~~~~g~~~~~~g~~~~--------a~~~vl~lDE~- 172 (369)
|....++..++...+.. .. .... . ..+...+ ++..........++.|..++ .+|.++++|||
T Consensus 88 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 88 EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred cCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 43333332222211110 00 0111 1 1111111 12111111112233333222 38999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
..+|+.....+++.+.+
T Consensus 168 s~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 168 LGLAPILVSEVFEVIQK 184 (240)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 79999999999998865
No 95
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.05 E-value=7.5e-12 Score=109.89 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=79.0
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcch---hh-hhh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEA---MG-IEV 106 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~---~~-~~~ 106 (369)
++..+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.+.... .... .. ..+
T Consensus 10 l~~~y~~~~~l~~vsl~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~~~~~~i 84 (224)
T 2pcj_A 10 IKKVIRGYEILKGISLSV---KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYT--NEKELSLLRNRKL 84 (224)
T ss_dssp EEEEETTEEEEEEEEEEE---ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSS--CHHHHHHHHHHHE
T ss_pred EEEEECCEeeEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCC--CHHHHHHHHhCcE
Confidence 333455544667778888 6777 88999999999999999999998875321 2122110 1110 11 223
Q ss_pred hhhhhccccchhhhhcccccc----CCCC--Cch---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEE
Q 017575 107 RESVVKGEELSITFSKINMVD----LPLG--ATE---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYV 169 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~l 169 (369)
..++|....++..++...+.. .... ... ..+...+++. ..+++|+++.. -+.....+|.++++
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 333443333322222111100 0000 000 1111111111 22333333211 11112238999999
Q ss_pred eCC-CCCCHHHHHHHHHHHhc
Q 017575 170 DEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 170 DE~-~~l~~~~~~~L~~~l~~ 189 (369)
||| ..+|+.....+.+.+.+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHH
Confidence 999 78999999999988864
No 96
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.05 E-value=1.2e-11 Score=111.22 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCC-----C---CCCcc-
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNS-----D---PEDPE- 100 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~-----~---~~~~~- 100 (369)
+++.-+|...+++.+++.+ ..|. +.|+||||||||||+++|++++++..+.. +.+... . .....
T Consensus 11 ~l~~~y~~~~vl~~vsl~i---~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 1b0u_A 11 DLHKRYGGHEVLKGVSLQA---RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQ 87 (262)
T ss_dssp EEEEEETTEEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred eEEEEECCEEEEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhh
Confidence 3444456555677788888 7787 89999999999999999999998875322 212110 0 00000
Q ss_pred --hhhhhhhhhhhccccchhhhhcccccc----C-CCCCc-----hHhhhcccchhHH-hhhcccccccchhhh------
Q 017575 101 --AMGIEVRESVVKGEELSITFSKINMVD----L-PLGAT-----EDRVCGTIDIEKA-LTEGVKAFEPGLLAK------ 161 (369)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~-----~~~~~~~~~~~~~-~~~g~~~~~~g~~~~------ 161 (369)
.....+..++|....++..++...+.. . ..... ...+...+++... .......++.|..++
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAra 167 (262)
T 1b0u_A 88 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARA 167 (262)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 112233344444333333222211110 0 00000 1112222222222 122222233333222
Q ss_pred --cCCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 162 --ANRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 162 --a~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
.+|.++++||| ..+|+..+..+++++.+
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 168 LAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 38999999999 78999999999988864
No 97
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.04 E-value=4.4e-11 Score=112.33 Aligned_cols=149 Identities=18% Similarity=0.140 Sum_probs=81.2
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhh
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRES 109 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 109 (369)
+++.-+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.++... .+ ....+..+
T Consensus 16 ~l~~~y~~~~vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--~~--~~r~ig~v 88 (372)
T 1v43_A 16 NLTKRFGNFTAVNKLNLTI---KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL--PP--KDRNISMV 88 (372)
T ss_dssp EEEEEETTEEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS--CG--GGGTEEEE
T ss_pred EEEEEECCEEEEeeeEEEE---CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC--Ch--hhCcEEEE
Confidence 3444456555677788888 7777 89999999999999999999998876321 2222111 11 11234444
Q ss_pred hhccccchhhhhcccccc-CCC-CCc-------hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC
Q 017575 110 VVKGEELSITFSKINMVD-LPL-GAT-------EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV 172 (369)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~~~-~~~-------~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~ 172 (369)
+|....++..++...+.. ... ... ...+...+++. ..+++|+++.. .+.....+|.+++||||
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 554444444333322211 000 001 11122222222 22344443211 12222238999999999
Q ss_pred -CCCCHHHHHHHHHHHhc
Q 017575 173 -NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 -~~l~~~~~~~L~~~l~~ 189 (369)
..||+..+..+++.|.+
T Consensus 169 ~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHH
Confidence 89999999888888764
No 98
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.03 E-value=2.5e-11 Score=110.02 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=40.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
+++.-+|...+++.+++.+ ..|. +.|+||||||||||+++|++++++..+
T Consensus 26 ~l~~~y~~~~vL~~isl~i---~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 26 QIGRMKQGKTILKKISWQI---AKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp EEEEEETTEEEEEEEEEEE---ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred eEEEEECCEEEEEeeeEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 3444456555677788888 6777 899999999999999999999988753
No 99
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.03 E-value=1.1e-11 Score=107.82 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=37.5
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+.-+|. .+++.+++.+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 17 s~~y~~-~il~~vsl~i---~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~ 63 (214)
T 1sgw_A 17 SVGYDK-PVLERITMTI---EKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63 (214)
T ss_dssp EEESSS-EEEEEEEEEE---ETTCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEeCC-eEEeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 334455 5667778887 6777 99999999999999999999998765
No 100
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.02 E-value=1.5e-11 Score=110.67 Aligned_cols=49 Identities=31% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.-+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..
T Consensus 16 ~l~~~~~~~~vL~~vsl~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 65 (266)
T 4g1u_C 16 HLHYHVQQQALINDVSLHI---ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65 (266)
T ss_dssp EEEEEETTEEEEEEEEEEE---ETTCEEEEECCTTSCHHHHHHHHTSSSCCSS
T ss_pred eEEEEeCCeeEEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 4445567666788888888 6787 99999999999999999999998765
No 101
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.02 E-value=2.6e-11 Score=113.00 Aligned_cols=145 Identities=16% Similarity=0.071 Sum_probs=80.3
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhc
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVK 112 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 112 (369)
.-+|.. +++.+++.+ ..|. +.|+||||||||||+|+|+++.++..+.. +.++.. .......+..++|.
T Consensus 9 ~~y~~~-~l~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~----~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 9 RKWKNF-SLDNLSLKV---ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD----LSPEKHDIAFVYQN 80 (348)
T ss_dssp EECSSC-EEEEEEEEE---CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT----SCHHHHTCEEECTT
T ss_pred EEECCE-EEeeeEEEE---cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCC----CchhhCcEEEEecC
Confidence 344554 667788888 7777 89999999999999999999998876321 222211 01112233444444
Q ss_pred cccchhhhhccccc------cCCCCCchHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCH
Q 017575 113 GEELSITFSKINMV------DLPLGATEDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 113 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
...++..++..++. ..+.......+...+++. ..+++|+++.. .+.....+|.+++|||| ..+|+
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 44443333221110 000000011112112111 22344443211 12222238999999999 89999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
.....+++.|.+
T Consensus 161 ~~~~~l~~~l~~ 172 (348)
T 3d31_A 161 RTQENAREMLSV 172 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888888864
No 102
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.02 E-value=1.9e-11 Score=109.25 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=37.7
Q ss_pred cccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 37 AIVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 37 ~i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.-+| ...+++.+++.+ ..|. +.|+||||+|||||+++|++++++..+
T Consensus 12 ~~y~~~~~vl~~isl~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 12 FYYQAENFLFQQLNFDL---NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp EEETTTTEEEEEEEEEE---ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred EEeCCCCeEEEEEEEEE---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3344 444566778887 6777 899999999999999999999988753
No 103
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.01 E-value=2e-11 Score=110.25 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=39.1
Q ss_pred CCccccChH-HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQE-EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~-~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..||.. .+++.+++.+ ..|. +.|+||||||||||+++|++++++..
T Consensus 12 ~ls~~y~~~~~~L~~isl~i---~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 12 ELNYNYSDGTHALKGINMNI---KRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp EEEEECTTSCEEEEEEEEEE---ETTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEEECCCCeEEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 344445432 3677888888 7787 89999999999999999999998875
No 104
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.00 E-value=3.4e-11 Score=107.23 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||||||||||+++|++++++..+.. +.++.. .........+..++|....++
T Consensus 22 ~~vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~ 96 (247)
T 2ff7_A 22 PVILDNINLSI---KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL--ADPNWLRRQVGVVLQDNVLLN 96 (247)
T ss_dssp CEEEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT--SCHHHHHHHEEEECSSCCCTT
T ss_pred cceeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh--CCHHHHHhcEEEEeCCCcccc
Confidence 34566778888 6777 99999999999999999999998875321 222211 111112223334444333322
Q ss_pred hhhhccccccCCCCCchHhh---hcccchhHHhhh-----------cccccccchhhh--------cCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRV---CGTIDIEKALTE-----------GVKAFEPGLLAK--------ANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------g~~~~~~g~~~~--------a~~~vl~lDE~-~~ 174 (369)
.++...+...........+ .....+...+.. ....++.|..++ .+|.++++||| ..
T Consensus 97 -~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~ 175 (247)
T 2ff7_A 97 -RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175 (247)
T ss_dssp -SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSC
T ss_pred -ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 2322222111111111111 111111111000 011233333222 38999999999 89
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+++.+.+
T Consensus 176 LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 176 LDYESEHVIMRNMHK 190 (247)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988865
No 105
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.99 E-value=2.2e-11 Score=114.03 Aligned_cols=148 Identities=16% Similarity=0.082 Sum_probs=81.5
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESV 110 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 110 (369)
++.-+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.++... .+ ....+..++
T Consensus 9 l~~~y~~~~vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--~~--~~r~ig~v~ 81 (362)
T 2it1_A 9 IVKKFGNFTALNNINLKI---KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL--PP--KDRNVGLVF 81 (362)
T ss_dssp EEEESSSSEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS--CG--GGTTEEEEC
T ss_pred EEEEECCEEEEEeeEEEE---CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC--CH--hHCcEEEEe
Confidence 333455545667788888 7777 88999999999999999999998875321 2222111 11 112334444
Q ss_pred hccccchhhhhcccccc----CCCCCc-----hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-
Q 017575 111 VKGEELSITFSKINMVD----LPLGAT-----EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV- 172 (369)
Q Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~- 172 (369)
|....++..++..++.. ...... ...+...+++. ..+++|+++.. .+.....+|.+++||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 54444443333221110 000000 01111111111 22334443211 12222238999999999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 017575 173 NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 173 ~~l~~~~~~~L~~~l~~ 189 (369)
..||+..+..+++.+.+
T Consensus 162 s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 162 SNLDALLRLEVRAELKR 178 (362)
T ss_dssp GGSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 89999999888888764
No 106
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.98 E-value=2.5e-10 Score=100.89 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=77.4
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchh----hhhhhhhhhcccc
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAM----GIEVRESVVKGEE 115 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 115 (369)
+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.+.... ..... ...+..++|....
T Consensus 20 ~L~~isl~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 20 ALKNVNLNI---KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL--DDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC--CHHHHHHHHHHHEEEECTTCCC
T ss_pred eEEeeeEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccC--CHHHHHHHhhccEEEEecCCcc
Confidence 566778887 7787 99999999999999999999998876321 2222111 11111 1124444554444
Q ss_pred chhhhhcccccc---C----CCCCc--hH---hhhcccch--------hHHhhhcccccc-cchhhhcCCCeEEEeCC-C
Q 017575 116 LSITFSKINMVD---L----PLGAT--ED---RVCGTIDI--------EKALTEGVKAFE-PGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 116 ~~~~~~~~~~~~---~----~~~~~--~~---~~~~~~~~--------~~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~ 173 (369)
++..++...+.. . ..... .. .....+++ ...+++|+++.. .+.....+|.++++||| .
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts 174 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTW 174 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 443333221110 0 00000 01 11111111 122333333211 11111238999999999 8
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+..+..+++++.+
T Consensus 175 ~LD~~~~~~i~~~l~~ 190 (235)
T 3tif_A 175 ALDSKTGEKIMQLLKK 190 (235)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988865
No 107
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.97 E-value=1.8e-11 Score=114.47 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=81.1
Q ss_pred ccccChHH--HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCC-CCcchhhhhhhh
Q 017575 36 TAIVGQEE--MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDP-EDPEAMGIEVRE 108 (369)
Q Consensus 36 ~~i~G~~~--~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~-~~~~~~~~~~~~ 108 (369)
+..+|... +++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.++.... .........+..
T Consensus 10 ~~~y~~~~~~vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~ 86 (353)
T 1oxx_K 10 SKVFKKGKVVALDNVNINI---ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGM 86 (353)
T ss_dssp EEEEGGGTEEEEEEEEEEE---CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEE
T ss_pred EEEECCEeeeeEeceEEEE---CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEE
Confidence 33455555 666788888 7777 89999999999999999999998875321 11111100 000011123344
Q ss_pred hhhccccchhhhhcccccc-CCC-CCc----h---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeC
Q 017575 109 SVVKGEELSITFSKINMVD-LPL-GAT----E---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDE 171 (369)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~-~~~----~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE 171 (369)
++|....++..++...+.. ... ... . ..+...+++. ..+++|+++.. .+.....+|.+++|||
T Consensus 87 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE 166 (353)
T 1oxx_K 87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE 166 (353)
T ss_dssp EETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4454444444333222110 000 001 0 1112222221 22334443211 1222223899999999
Q ss_pred C-CCCCHHHHHHHHHHHhc
Q 017575 172 V-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 172 ~-~~l~~~~~~~L~~~l~~ 189 (369)
| ..||+..+..+++.+.+
T Consensus 167 P~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 167 PFSNLDARMRDSARALVKE 185 (353)
T ss_dssp TTTTSCGGGHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9 89999988888887764
No 108
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.97 E-value=2.8e-10 Score=100.78 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcce
Q 017575 45 KLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.+++.+ ...-+.|+||||||||||+++|+++.++..
T Consensus 15 l~~isl~i---~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (240)
T 2onk_A 15 RLNVDFEM---GRDYCVLLGPTGAGKSVFLELIAGIVKPDR 52 (240)
T ss_dssp EEEEEEEE---CSSEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EeeeEEEE---CCEEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 55667777 553399999999999999999999998875
No 109
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.95 E-value=9.9e-11 Score=105.65 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=38.7
Q ss_pred CccccCh---HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQ---EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~---~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++..+|. ..+++.+++.+ ..|. +.|+||||||||||+++|++++++..
T Consensus 22 l~~~y~~~~~~~vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~ 73 (271)
T 2ixe_A 22 VSFAYPNHPNVQVLQGLTFTL---YPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73 (271)
T ss_dssp EEECCTTCTTSCCEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEeCCCCCceeeEeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3344554 34677788888 7787 89999999999999999999998775
No 110
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.5e-09 Score=99.60 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecCCCCHHH
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAEL 242 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~~~~~~~ 242 (369)
+..|+||||++++....++.|++.|++ .|....+|+++|. +..+.+++.+| .+.+.+++..+.
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEe-------------p~~~t~fIl~t~~-~~kl~~tI~SR---~~~f~~l~~~~i 144 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEE-------------PPEYAVIVLNTRR-WHYLLPTIKSR---VFRVVVNVPKEF 144 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHS-------------CCTTEEEEEEESC-GGGSCHHHHTT---SEEEECCCCHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhC-------------CCCCeEEEEEECC-hHhChHHHHce---eEeCCCCCHHHH
Confidence 456999999999999999999999987 2344555555542 34699999999 488888866554
Q ss_pred HHHHHHH
Q 017575 243 RVKIVEE 249 (369)
Q Consensus 243 ~~~il~~ 249 (369)
..++..
T Consensus 145 -~~~L~~ 150 (305)
T 2gno_A 145 -RDLVKE 150 (305)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 455443
No 111
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.94 E-value=4.7e-10 Score=99.84 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=72.6
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeecCCCCCCC-CCCcchhhhhhhhhhhccccchhhhh
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSD-PEDPEAMGIEVRESVVKGEELSITFS 121 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (369)
+++.+++.+ ..|. +.|+||||+|||||+++|++++++. +.....-... ..........+...+|....++..++
T Consensus 15 vl~~vsl~i---~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 15 RLGPLSGEV---RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TEEEEEEEE---ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 344566777 6777 8999999999999999999999876 4221110000 00111112223333343332222222
Q ss_pred ccccccCC-CCCchH---hhhcccchhHHhhhcccccccchhhh--------cCCC-------eEEEeCC-CCCCHHHHH
Q 017575 122 KINMVDLP-LGATED---RVCGTIDIEKALTEGVKAFEPGLLAK--------ANRG-------ILYVDEV-NLLDDHLVD 181 (369)
Q Consensus 122 ~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~g~~~~~~g~~~~--------a~~~-------vl~lDE~-~~l~~~~~~ 181 (369)
...+.... ...... .+...+++..........++.|..++ .+|. ++++||| +.+|+..+.
T Consensus 91 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 91 WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp HHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred HHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 21111100 000111 12222222111111112222333222 2688 9999999 899999999
Q ss_pred HHHHHHhc
Q 017575 182 VLLDSAAS 189 (369)
Q Consensus 182 ~L~~~l~~ 189 (369)
.+.+.+.+
T Consensus 171 ~l~~~l~~ 178 (249)
T 2qi9_C 171 ALDKILSA 178 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 112
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.93 E-value=3.2e-11 Score=113.45 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=79.5
Q ss_pred ccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCC----CCcchhhhhhh
Q 017575 36 TAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDP----EDPEAMGIEVR 107 (369)
Q Consensus 36 ~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~----~~~~~~~~~~~ 107 (369)
+.-+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.++..+.. +.++.... ..+ ....+.
T Consensus 10 ~~~y~~~~vl~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig 84 (372)
T 1g29_1 10 WKVFGEVTAVREMSLEV---KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIA 84 (372)
T ss_dssp EEEETTEEEEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEE
T ss_pred EEEECCEEEEeeeEEEE---cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEE
Confidence 33445544666778887 6777 89999999999999999999998875321 11111000 000 012233
Q ss_pred hhhhccccchhhhhcccccc----CCCCCc-----hHhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEe
Q 017575 108 ESVVKGEELSITFSKINMVD----LPLGAT-----EDRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVD 170 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lD 170 (369)
.++|....++..++..++.. ...... ...+...+++. ..+++|+.+.. .+.....+|.+++||
T Consensus 85 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 164 (372)
T 1g29_1 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD 164 (372)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 44444444443333221110 000000 01111111111 22333333211 112222389999999
Q ss_pred CC-CCCCHHHHHHHHHHHhc
Q 017575 171 EV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 171 E~-~~l~~~~~~~L~~~l~~ 189 (369)
|| ..||+..+..++..+.+
T Consensus 165 EP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 165 EPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp CTTTTSCHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHH
Confidence 99 89999999888888764
No 113
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.92 E-value=4.8e-10 Score=104.61 Aligned_cols=142 Identities=18% Similarity=0.118 Sum_probs=79.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcch---hhhhhhhhhhcccc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEA---MGIEVRESVVKGEE 115 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 115 (369)
.+++.+++.+ ..|. +.|+||||||||||+++|+++.++.++.. +.++... .... ....+..++|....
T Consensus 42 ~aL~~vsl~i---~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~--~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 42 QALNNVSLHV---PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL--SESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC--CHHHHHHHHTTEEEECSSCCC
T ss_pred EEEEeeEEEE---cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC--CHHHHHHHhCcEEEEeCCCcc
Confidence 3677888988 7888 89999999999999999999998876321 2222111 1111 12344555565544
Q ss_pred chhhhhcccccc----CCCCC--ch---Hhhhcccchh-------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCCCH
Q 017575 116 LSITFSKINMVD----LPLGA--TE---DRVCGTIDIE-------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLLDD 177 (369)
Q Consensus 116 ~~~~~~~~~~~~----~~~~~--~~---~~~~~~~~~~-------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l~~ 177 (369)
++..++...+.. ..... .. ..+...+++. ..+++|+++.. .+.....+|.++++||| ..||+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~ 196 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 444333222110 00000 00 1111111111 12233332211 11111138999999999 89999
Q ss_pred HHHHHHHHHHhc
Q 017575 178 HLVDVLLDSAAS 189 (369)
Q Consensus 178 ~~~~~L~~~l~~ 189 (369)
..+..++++|.+
T Consensus 197 ~~~~~i~~lL~~ 208 (366)
T 3tui_C 197 ATTRSILELLKD 208 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988864
No 114
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=6.2e-09 Score=87.78 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCCCccccC----hHHHHHHhhhhhc--cCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 32 VYPFTAIVG----QEEMKLCLLLNVI--DPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 32 ~~~~~~i~G----~~~~~~~l~~~l~--~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+|+++++ +..++..+...+- ....|. ++|+|||||||||+++++++.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346777775 3444443332221 112344 99999999999999999999885
No 115
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.91 E-value=1.4e-10 Score=109.58 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=82.4
Q ss_pred CCcccc--ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceee---cCCCCCCCCCCcchhhhhhh
Q 017575 34 PFTAIV--GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVV---VGDPYNSDPEDPEAMGIEVR 107 (369)
Q Consensus 34 ~~~~i~--G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~ 107 (369)
+++..| |...+++.+++.+ ..|. +.|+||+|||||||+++|+++.+ ..+. .+.++.. ..+......+.
T Consensus 24 ~l~~~y~~~~~~~L~~vsl~i---~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~--~~~~~~rr~ig 97 (390)
T 3gd7_A 24 DLTAKYTEGGNAILENISFSI---SPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS--ITLEQWRKAFG 97 (390)
T ss_dssp EEEEESSSSSCCSEEEEEEEE---CTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS--SCHHHHHHTEE
T ss_pred EEEEEecCCCeEEeeceeEEE---cCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc--CChHHHhCCEE
Confidence 344445 5556788888988 7887 99999999999999999999987 4321 1222211 11222223444
Q ss_pred hhhhccccchhhhhccccccCCCCCchHh---hhcccchhHH------------------hhhcccccc-cchhhhcCCC
Q 017575 108 ESVVKGEELSITFSKINMVDLPLGATEDR---VCGTIDIEKA------------------LTEGVKAFE-PGLLAKANRG 165 (369)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------------~~~g~~~~~-~g~~~~a~~~ 165 (369)
.++|....++ .++..++. ......... ....+.+... +++|+++.. .+.....+|.
T Consensus 98 ~v~Q~~~lf~-~tv~enl~-~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 98 VIPQKVFIFS-GTFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EESCCCCCCS-EEHHHHHC-TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEcCCcccCc-cCHHHHhh-hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 4555443333 22222211 111111111 1111111111 333333211 1111223899
Q ss_pred eEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 166 ILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 166 vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+++|||| ..||+..+..+++.+.+
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999 79999999999998875
No 116
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.91 E-value=2.3e-09 Score=110.90 Aligned_cols=160 Identities=22% Similarity=0.308 Sum_probs=93.4
Q ss_pred CCCCCCccccChHHHHHHhhhhhc------------cCCCC-eeEEecCCCCChhHHHHHHHhccCcceeecCCCCCCCC
Q 017575 30 RPVYPFTAIVGQEEMKLCLLLNVI------------DPKIG-GVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDP 96 (369)
Q Consensus 30 ~~~~~~~~i~G~~~~~~~l~~~l~------------~~~~g-~vlL~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 96 (369)
.+...|++++|++.+++.+...+. ....+ +++|+|||||||||+++++++.++..-...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v-------- 269 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI-------- 269 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE--------
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE--------
Confidence 344689999997766544433221 01233 399999999999999999999885221000
Q ss_pred CCcchhhhhhhhhhhccccchhhhhccccccCCCCCchHhhhcccchhHHhhhcccccccchhhhcCCCeEEEeCCCCCC
Q 017575 97 EDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 176 (369)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~a~~~vl~lDE~~~l~ 176 (369)
++ .++.. .........+. . .+ .......++++|+||++.+.
T Consensus 270 -~~----~~l~~-------------------~~~g~~~~~l~------~-------vf--~~a~~~~p~il~iDEid~l~ 310 (806)
T 1ypw_A 270 -NG----PEIMS-------------------KLAGESESNLR------K-------AF--EEAEKNAPAIIFIDELDAIA 310 (806)
T ss_dssp -EH----HHHSS-------------------SSTTHHHHHHH------H-------HH--HHHHHHCSEEEEEESGGGTS
T ss_pred -Ec----hHhhh-------------------hhhhhHHHHHH------H-------HH--HHHHhcCCcEEEeccHHHhh
Confidence 00 00000 00000000000 0 00 00112357899999995442
Q ss_pred -----------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHh--hhccceeecCCCCHHHH
Q 017575 177 -----------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLD--RFGMHAQVGTVRDAELR 243 (369)
Q Consensus 177 -----------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~--R~~~~i~~~~~~~~~~~ 243 (369)
...++.|+.+|+... ....+.+|+++|+. ..+++++.+ ||...+.+..| ..+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn~~-~~ld~al~r~gRf~~~i~i~~p-~~~~r 377 (806)
T 1ypw_A 311 PKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRP-NSIDPALRRFGRFDREVDIGIP-DATGR 377 (806)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECSCT-TTSCTTTTSTTSSCEEECCCCC-CHHHH
T ss_pred hccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccCCc-hhcCHHHhcccccccccccCCC-CHHHH
Confidence 346677888876421 12467888999964 458888887 89877888888 56667
Q ss_pred HHHHHH
Q 017575 244 VKIVEE 249 (369)
Q Consensus 244 ~~il~~ 249 (369)
..|+..
T Consensus 378 ~~il~~ 383 (806)
T 1ypw_A 378 LEILQI 383 (806)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677664
No 117
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.90 E-value=4.3e-11 Score=106.40 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+++.+++.+ ..|. +.|+||||||||||+++|+++.++..
T Consensus 15 ~~vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (243)
T 1mv5_A 15 EQILRDISFEA---QPNSIIAFAGPSGGGKSTIFSLLERFYQPTA 56 (243)
T ss_dssp SCSEEEEEEEE---CTTEEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred CceEEEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 34566778888 7887 99999999999999999999998765
No 118
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.90 E-value=1.1e-09 Score=98.68 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=34.2
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+++.+ ..|. +.|+||||+|||||+++|+++.++..
T Consensus 22 vl~~vsl~i---~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~ 61 (266)
T 2yz2_A 22 ALENVSLVI---NEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61 (266)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred eeeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 566778887 7787 88999999999999999999998775
No 119
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.89 E-value=1.1e-10 Score=104.84 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=32.6
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ . |. +.|+||||+|||||+++|+++. +..
T Consensus 19 ~il~~vsl~i---~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 19 FSLENINLEV---N-GEKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEEEEEEEEE---C-SSEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred eeEEeeeEEE---C-CEEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 3556677787 7 87 9999999999999999999999 765
No 120
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.89 E-value=7e-09 Score=98.93 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=89.9
Q ss_pred CCCeEEEeCCCCCC------HHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC--CCC---HhHHhhhccc
Q 017575 163 NRGILYVDEVNLLD------DHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG--ELR---PQLLDRFGMH 231 (369)
Q Consensus 163 ~~~vl~lDE~~~l~------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~--~l~---~al~~R~~~~ 231 (369)
++.+++|||++.++ .+.+..|...+.+... .+ ...++.+|++++.... .+. +.+.+|+..+
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~----~~----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS----RD----GVNRIGFLLVASDVRALSYMREKIPQVESQIGFK 209 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC----TT----SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc----CC----CCceEEEEEEeccccHHHHHhhhcchhhhhcCCe
Confidence 35699999997653 4666666666654100 00 0146777777762210 123 5566777666
Q ss_pred eeecCCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcC--CCCCch
Q 017575 232 AQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELN--VDGLRG 309 (369)
Q Consensus 232 i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~--~~s~R~ 309 (369)
+.+++++ .+....++..+ .... .....+++++...+...+.... .+.+|.
T Consensus 210 i~l~~l~-~~e~~~ll~~~------------------------~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 210 LHLPAYK-SRELYTILEQR------------------------AELG---LRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EECCCCC-HHHHHHHHHHH------------------------HHHH---BCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred eeeCCCC-HHHHHHHHHHH------------------------HHhc---CCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 7787774 45454554422 1111 1234578888888887775211 015788
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 310 DIVSNRAAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 310 ~~~ll~~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
+..+++.+...|...+...++.+++..++....
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 999999888888888888999999998886544
No 121
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.88 E-value=9.5e-11 Score=107.28 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||+|||||||+++|++++++..+.. +.++.. .....+...+..++|....+.
T Consensus 67 ~~vL~~isl~i---~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~--~~~~~~r~~i~~v~Q~~~lf~ 141 (306)
T 3nh6_A 67 RETLQDVSFTV---MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ--VTQASLRSHIGVVPQDTVLFN 141 (306)
T ss_dssp CEEEEEEEEEE---CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTS--BCHHHHHHTEEEECSSCCCCS
T ss_pred CceeeeeeEEE---cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEccc--CCHHHHhcceEEEecCCccCc
Confidence 34677788888 7777 99999999999999999999998875322 222211 112223334444444433332
Q ss_pred hhhhccccccCCCCCchHhhh------cccchh---------------HHhhhcccccc-cchhhhcCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRVC------GTIDIE---------------KALTEGVKAFE-PGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~ 174 (369)
.++..++.........+.+. +..+.. ..+++|+++.. .+.....+|.+++|||| ..
T Consensus 142 -~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~ 220 (306)
T 3nh6_A 142 -DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSA 220 (306)
T ss_dssp -EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSC
T ss_pred -ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 23322221111111111111 111111 01223322111 11111138999999999 79
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+.+.+.+
T Consensus 221 LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 221 LDTSNERAIQASLAK 235 (306)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999888888864
No 122
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.87 E-value=5.7e-10 Score=100.05 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.+++.+++.+ ..|. +.|+||||||||||+++|++++++.
T Consensus 34 ~vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 73 (260)
T 2ghi_A 34 RTLKSINFFI---PSGTTCALVGHTGSGKSTIAKLLYRFYDAE 73 (260)
T ss_dssp CSEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCE
T ss_pred ceeEeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 3667788888 7787 9999999999999999999999763
No 123
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.86 E-value=1.1e-10 Score=104.15 Aligned_cols=46 Identities=30% Similarity=0.306 Sum_probs=35.9
Q ss_pred cccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhc--cCcce
Q 017575 37 AIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDL--LPVIK 85 (369)
Q Consensus 37 ~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~--l~~~~ 85 (369)
.-+|...+++.+++.+ ..|. +.|+||||+|||||+++|+++ .++..
T Consensus 11 ~~y~~~~vl~~vsl~i---~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~ 59 (250)
T 2d2e_A 11 ASIDGETILKGVNLVV---PKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59 (250)
T ss_dssp EEETTEEEEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEE
T ss_pred EEECCEEEEeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3345444666778887 6777 899999999999999999998 55544
No 124
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.83 E-value=9.5e-10 Score=96.75 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=34.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||+|||||||+++|++++++..
T Consensus 22 ~il~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 62 (229)
T 2pze_A 22 PVLKDINFKI---ERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62 (229)
T ss_dssp CSEEEEEEEE---ETTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred eeeeeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 4566778887 6777 99999999999999999999998865
No 125
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.83 E-value=9.5e-10 Score=97.24 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=34.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+++.+++.+ ..|. +.|+||||||||||+++|++++++..
T Consensus 19 ~vl~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 59 (237)
T 2cbz_A 19 PTLNGITFSI---PEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59 (237)
T ss_dssp CSEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTCSEEEE
T ss_pred ceeeeeEEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4566778888 7787 99999999999999999999998765
No 126
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.79 E-value=1.3e-09 Score=109.06 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=78.0
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||+|+||||++++++++.++.++.. +.+... .+.......+..++|....++
T Consensus 356 ~~~l~~i~l~i---~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~ 430 (582)
T 3b5x_A 356 KPALSHVSFSI---PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD--YKLTNLRRHFALVSQNVHLFN 430 (582)
T ss_pred ccccccceEEE---CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhh--CCHHHHhcCeEEEcCCCcccc
Confidence 45788999998 7787 99999999999999999999998765321 211111 111112223333334333322
Q ss_pred hhhhccccccCC-CCCchHhhh---cccchh------------------HHhhhcccccc-cchhhhcCCCeEEEeCC-C
Q 017575 118 ITFSKINMVDLP-LGATEDRVC---GTIDIE------------------KALTEGVKAFE-PGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~------------------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~ 173 (369)
.++..++.... .....+++. ...+.. ..+++|+++.. -+.....+|.++++||| .
T Consensus 431 -~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts 509 (582)
T 3b5x_A 431 -DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509 (582)
T ss_pred -ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 23222221110 111111111 111111 12333333211 11112238999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+.....+.+.+.+
T Consensus 510 ~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 510 ALDTESERAIQAALDE 525 (582)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999888875
No 127
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=4e-08 Score=80.28 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCC--CCCHhHHhhhcc
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEG--ELRPQLLDRFGM 230 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~--~l~~al~~R~~~ 230 (369)
++++++|||+..++...+..|+++++... . .+ ...+|.|+|..+. ...+.|.+||..
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~---~-~g-------~~~iiits~~~p~~l~~~~~L~SRl~~ 141 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFR---N-SG-------KGFLLLGSEYTPQQLVIREDLRTRMAY 141 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHH---H-HT-------CCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHH---H-cC-------CcEEEEECCCCHHHccccHHHHHHHhc
Confidence 46799999999888777888888887521 0 01 1213445552222 222899999865
No 128
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.75 E-value=3.7e-10 Score=101.66 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=36.4
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++..+|...+++.+++.+ ..|. +.|+||||||||||+++|+++.
T Consensus 25 ~l~~~y~~~~vl~~vsl~i---~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 25 DLHVSVEDKAILRGLSLDV---HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEEETTEEEEEEEEEEE---CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred eEEEEECCEEEEEeeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444456555677788888 7787 9999999999999999999984
No 129
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.71 E-value=1.7e-08 Score=91.72 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.+++.+ ..|. +.|+||+|||||||+++|++++++..
T Consensus 53 vl~~isl~i---~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 92 (290)
T 2bbs_A 53 VLKDINFKI---ERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92 (290)
T ss_dssp SEEEEEEEE---CTTCEEEEEESTTSSHHHHHHHHTTSSCEEE
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 455566666 6777 99999999999999999999998765
No 130
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.68 E-value=2.3e-09 Score=107.52 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=76.3
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. +.|+||+|+||||++++++++.++..+.. +.+... .+...+...+..++|....++
T Consensus 369 ~~l~~isl~i---~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~- 442 (598)
T 3qf4_B 369 PVLKDITFHI---KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK--IKRSSLRSSIGIVLQDTILFS- 442 (598)
T ss_dssp CSCCSEEEEC---CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG--SCHHHHHHHEEEECTTCCCCS-
T ss_pred ccccceEEEE---cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh--CCHHHHHhceEEEeCCCcccc-
Confidence 4677788887 6777 99999999999999999999998875321 212111 112222333333444333322
Q ss_pred hhhccccccCCCCCchHhh---hcccchh------------------HHhhhcccccc-cchhhhcCCCeEEEeCC-CCC
Q 017575 119 TFSKINMVDLPLGATEDRV---CGTIDIE------------------KALTEGVKAFE-PGLLAKANRGILYVDEV-NLL 175 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~l 175 (369)
.++..++.........+++ ....... ..+++|+++.. -++....+|.++++||| ..+
T Consensus 443 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~L 522 (598)
T 3qf4_B 443 TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522 (598)
T ss_dssp SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTC
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 2222221111011111111 1111100 12233333211 11112238999999999 799
Q ss_pred CHHHHHHHHHHHhc
Q 017575 176 DDHLVDVLLDSAAS 189 (369)
Q Consensus 176 ~~~~~~~L~~~l~~ 189 (369)
|+.....+.+.+.+
T Consensus 523 D~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 523 DTKTEKSIQAAMWK 536 (598)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888888764
No 131
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.67 E-value=1.8e-09 Score=108.02 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=77.4
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||+|+||||++++++++.++.++.. +.+... .+.......+..++|....++
T Consensus 356 ~~~l~~v~~~i---~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~ 430 (582)
T 3b60_A 356 VPALRNINLKI---PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE--YTLASLRNQVALVSQNVHLFN 430 (582)
T ss_dssp CCSEEEEEEEE---CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT--BCHHHHHHTEEEECSSCCCCS
T ss_pred CccccceeEEE---cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc--cCHHHHHhhCeEEccCCcCCC
Confidence 34677788888 6777 99999999999999999999998875322 222211 111222233334444433332
Q ss_pred hhhhccccccCC-CCCchHhh---hcccchhHHhh-----------hcccccccchhhh--------cCCCeEEEeCC-C
Q 017575 118 ITFSKINMVDLP-LGATEDRV---CGTIDIEKALT-----------EGVKAFEPGLLAK--------ANRGILYVDEV-N 173 (369)
Q Consensus 118 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~-----------~g~~~~~~g~~~~--------a~~~vl~lDE~-~ 173 (369)
.++..++.... .....+++ ....+...... .+...+..|..++ .+|.++++||| .
T Consensus 431 -~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts 509 (582)
T 3b60_A 431 -DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509 (582)
T ss_dssp -SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTS
T ss_pred -CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 23322221111 11122211 11111111000 0111233333222 38999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+.....+.+.+.+
T Consensus 510 ~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 510 ALDTESERAIQAALDE 525 (582)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999988888865
No 132
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.65 E-value=1.5e-07 Score=107.80 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHh-------cCCceeeec-ceeeeecCceEEEeecCCCC---CCCCHhHHhhhccce
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAA-------SGWNTVERE-GISISHPARFILIGSGNPEE---GELRPQLLDRFGMHA 232 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~-------~~~~~~~~~-~~~~~~~~~~~li~t~n~~~---~~l~~al~~R~~~~i 232 (369)
+.+.++||+|+++.++++.+.+.+. ++...+.-. |.++..+..+.+++|+||.. .+++++|.+||.. +
T Consensus 657 GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v 735 (3245)
T 3vkg_A 657 GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-M 735 (3245)
T ss_dssp TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE-E
T ss_pred CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE-E
Confidence 6699999999999999988887665 222223223 66788888999999999842 3599999999976 9
Q ss_pred eecCCCCHHHHHHHHHHhhhcc
Q 017575 233 QVGTVRDAELRVKIVEERARFD 254 (369)
Q Consensus 233 ~~~~~~~~~~~~~il~~~~~~~ 254 (369)
.+..| +.+....|+....+|.
T Consensus 736 ~m~~P-d~~~i~ei~L~s~Gf~ 756 (3245)
T 3vkg_A 736 AMIKP-DREMIAQVMLYSQGFK 756 (3245)
T ss_dssp ECCSC-CHHHHHHHHHHTTTCS
T ss_pred EEeCC-CHHHHHHHHHHHcccc
Confidence 99999 5666666655444443
No 133
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.65 E-value=3.4e-09 Score=105.96 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=77.6
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccch
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELS 117 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
..+++.+++.+ ..|. +.|+||+|+||||++++|+++.++.++.. +.+... .+...+...+..++|....++
T Consensus 356 ~~~l~~isl~i---~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~ 430 (587)
T 3qf4_A 356 DPVLSGVNFSV---KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT--VKLKDLRGHISAVPQETVLFS 430 (587)
T ss_dssp CCSEEEEEEEE---CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG--BCHHHHHHHEEEECSSCCCCS
T ss_pred CcceeceEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc--CCHHHHHhheEEECCCCcCcC
Confidence 34677788888 7777 99999999999999999999998875321 222211 112222333444444433332
Q ss_pred hhhhccccccCCCCCchHhhh------cccchh---------------HHhhhcccccc-cchhhhcCCCeEEEeCC-CC
Q 017575 118 ITFSKINMVDLPLGATEDRVC------GTIDIE---------------KALTEGVKAFE-PGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------------~~~~~g~~~~~-~g~~~~a~~~vl~lDE~-~~ 174 (369)
.++..++.........++.. +..+.. ..+++|+++.. -++....+|.++++||| ..
T Consensus 431 -~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 431 -GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp -EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred -ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 23322221111111222111 110000 11222222111 11111138999999999 79
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+.+.+.+
T Consensus 510 LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 510 VDPITEKRILDGLKR 524 (587)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888864
No 134
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.64 E-value=6.3e-09 Score=103.94 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.+++.+++.+ ..|. +.|+||+|+||||++++++++.++.++
T Consensus 355 ~~l~~isl~i---~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 355 PILKDINLSI---EKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp CSEEEEEEEE---CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred cceeeeEEEE---CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 4677788888 7777 999999999999999999999988753
No 135
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.63 E-value=9e-09 Score=103.18 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=75.8
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchhh
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSIT 119 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
+++.+++.+ ..|. +.|+||+|+|||||+++|+++.++.++.. +.+... .+.......+..++|....++ .
T Consensus 359 vl~~isl~i---~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~--~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 359 IFQDFSLSI---PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ--LNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp EEEEEEEEE---CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTT--BCHHHHHHSEEEECSSCCCCS-S
T ss_pred cccceEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhh--CCHHHHHhceEEEccCCcccC-C
Confidence 567778887 6777 99999999999999999999998876322 222211 111222233334444433332 2
Q ss_pred hhccccccC-CC--CCchHhhh---cccchhHH---h----h----hcccccccchhhh--------cCCCeEEEeCC-C
Q 017575 120 FSKINMVDL-PL--GATEDRVC---GTIDIEKA---L----T----EGVKAFEPGLLAK--------ANRGILYVDEV-N 173 (369)
Q Consensus 120 ~~~~~~~~~-~~--~~~~~~~~---~~~~~~~~---~----~----~g~~~~~~g~~~~--------a~~~vl~lDE~-~ 173 (369)
++..++... +. ....+++. ...+.... + + .+...+..|..++ .+|.++++||| .
T Consensus 433 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts 512 (595)
T 2yl4_A 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 512 (595)
T ss_dssp BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCS
T ss_pred CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 332222111 11 01222111 11111000 0 0 0011233333222 38999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|+.....+.+.+.+
T Consensus 513 ~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 513 ALDAENEYLVQEALDR 528 (595)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888888864
No 136
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.53 E-value=4e-08 Score=97.02 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.7
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. +.|+||||||||||+++|+++.++..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 340 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 340 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3566 99999999999999999999998765
No 137
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.53 E-value=5.5e-09 Score=103.19 Aligned_cols=48 Identities=35% Similarity=0.290 Sum_probs=35.4
Q ss_pred CCccccChHH-HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVGQEE-MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G~~~-~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++.-+|... ++..++ .+ ..|. +.|+||||||||||+++|++++++..
T Consensus 26 ~ls~~yg~~~~~l~~vs-~i---~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~ 75 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRLP-VV---KEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75 (538)
T ss_dssp CEEEECSTTCCEEECCC-CC---CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CcEEEECCccccccCcC-cC---CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4455556532 344455 44 6777 99999999999999999999997654
No 138
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.52 E-value=1.3e-07 Score=80.41 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred CeeEEecCCCCChhHHHHHHHhccC
Q 017575 58 GGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 58 g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.+++|+||||||||++|.+++..+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999998874
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.52 E-value=9.8e-08 Score=80.38 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.2
Q ss_pred hcCCCeEEEeC--C-CCCCHHHHHHHHHHHhc
Q 017575 161 KANRGILYVDE--V-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 161 ~a~~~vl~lDE--~-~~l~~~~~~~L~~~l~~ 189 (369)
..+|.++++|| | +.+|+..+..+.+.+++
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 35789999999 6 78999999999999975
No 140
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.50 E-value=9.2e-09 Score=102.84 Aligned_cols=47 Identities=34% Similarity=0.284 Sum_probs=34.0
Q ss_pred CccccChHH-HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 35 FTAIVGQEE-MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 35 ~~~i~G~~~-~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.-||... ++..++ .+ ..|. +.|+||||+|||||+++|++++++..
T Consensus 97 ls~~yg~~~~~l~~vs-~i---~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~ 145 (607)
T 3bk7_A 97 CVHRYGVNAFVLYRLP-IV---KDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 145 (607)
T ss_dssp EEEECSTTCCEEECCC-CC---CTTSEEEEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred eEEEECCCCeeeCCCC-CC---CCCCEEEEECCCCChHHHHHHHHhCCCCCCC
Confidence 334445432 344444 44 6777 99999999999999999999997654
No 141
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.49 E-value=7.6e-08 Score=94.89 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. +.|+||||+|||||+|+|++++.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~ 53 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 6777 88999999999999999999997764
No 142
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.49 E-value=3.4e-08 Score=98.71 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.7
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. +.|+||||+|||||+++|++++++..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4566 89999999999999999999998765
No 143
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.45 E-value=1.6e-07 Score=92.57 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.9
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. +.|+||||||||||+++|+++.++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~ 322 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADE 322 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4566 89999999999999999999998865
No 144
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.31 E-value=7.3e-07 Score=89.01 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=27.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. +.|+||||+|||||+++|++++++..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~ 131 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 5676 99999999999999999999998764
No 145
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.5e-07 Score=88.92 Aligned_cols=27 Identities=33% Similarity=0.542 Sum_probs=24.8
Q ss_pred eEEecCCCCChhHHHHHHHhccCccee
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
+.|+||+|+|||||+++|++++++..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 799999999999999999999987653
No 146
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.26 E-value=1.9e-07 Score=101.17 Aligned_cols=41 Identities=37% Similarity=0.475 Sum_probs=35.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.+++.+++.+ ..|. +.|+||+|||||||+++|.++.++.++
T Consensus 404 ~vL~~isl~i---~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 404 QILKGLNLKV---KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp CSEEEEEEEE---CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred cceecceEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3677788888 6777 999999999999999999999988753
No 147
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.26 E-value=1.3e-06 Score=81.33 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=85.6
Q ss_pred cCCCeEEEeCCCC-CCHHHHHHHHHHHhcCCceeeecceeeeecCce-EEEeecCCCC----CCCCHhHHhhhccceeec
Q 017575 162 ANRGILYVDEVNL-LDDHLVDVLLDSAASGWNTVEREGISISHPARF-ILIGSGNPEE----GELRPQLLDRFGMHAQVG 235 (369)
Q Consensus 162 a~~~vl~lDE~~~-l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~li~t~n~~~----~~l~~al~~R~~~~i~~~ 235 (369)
++..++++||++. ++...++.|+..+++ .|.+. .++.++++.+ ..+.+++.+|+.+ +.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~-------------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~~ 140 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGL-------------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTCQ 140 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTT-------------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEEC
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhc-------------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEee
Confidence 3456999999998 999999999999986 13343 4444444332 2367889999975 8888
Q ss_pred CCCCHHHHHHHHHHhhhccCCChHHHhhhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 017575 236 TVRDAELRVKIVEERARFDKNPKEFRDSYKAEQAKLQQQIASARSSLPAVQIDHDLKVKISKVCAELNVDGLRGDIVSNR 315 (369)
Q Consensus 236 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~s~R~~~~ll~ 315 (369)
+++..+.. ..+.. . . ....+.+++++...|.+.+. . +.|.+.+.+.
T Consensus 141 ~l~~~~l~-~~l~~------------------------~-~----~~~g~~i~~~a~~~l~~~~~---g-dl~~~~~ele 186 (343)
T 1jr3_D 141 TPEQAQLP-RWVAA------------------------R-A----KQLNLELDDAANQVLCYCYE---G-NLLALAQALE 186 (343)
T ss_dssp CCCTTHHH-HHHHH------------------------H-H----HHTTCEECHHHHHHHHHSST---T-CHHHHHHHHH
T ss_pred CCCHHHHH-HHHHH------------------------H-H----HHcCCCCCHHHHHHHHHHhc---h-HHHHHHHHHH
Confidence 88654433 33221 1 1 12357899999888877653 2 5677776666
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHhHHh
Q 017575 316 AAKALAALKGRDKVSAEDIATVMPNCL 342 (369)
Q Consensus 316 ~a~a~A~l~~~~~v~~~~i~~a~~~vl 342 (369)
..... .+...|+.++|.+.+....
T Consensus 187 kl~l~---~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 187 RLSLL---WPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHH---CTTCEECHHHHHHHHHHHC
T ss_pred HHHHh---cCCCCCCHHHHHHHHhhhh
Confidence 54332 3445799999888766543
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.23 E-value=2.8e-07 Score=95.88 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=34.1
Q ss_pred CccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHh
Q 017575 35 FTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 35 ~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~ 79 (369)
++.-||...+++.+++.+ ..|. +.|+||||+|||||+++|++
T Consensus 441 ls~~yg~~~iL~~vsl~I---~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 441 FSLAYGAKILLNKTQLRL---KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTEEEEEEEEEEE---ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCEEeEecceEEE---cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444566655677788888 6777 99999999999999999984
No 149
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.22 E-value=1.8e-06 Score=77.17 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=30.9
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.+++.++ + ..|. ++|+||+||||||+++++++++++.
T Consensus 15 ~vl~~i~--i---~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 15 DKVLELC--H---RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp THHHHGG--G---CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--h---CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4667776 4 5666 9999999999999999999998764
No 150
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.21 E-value=7.5e-07 Score=96.58 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchhh
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSIT 119 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
+++.+++.+ ..|. +.|+||+|+||||++++|+++.++.++.. +.+... .....+...+..+.|....++ .
T Consensus 1048 ~l~~vsl~i---~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~~-~ 1121 (1284)
T 3g5u_A 1048 VLQGLSLEV---KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ--LNVQWLRAQLGIVSQEPILFD-C 1121 (1284)
T ss_dssp SBSSCCEEE---CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS--SCHHHHTTSCEEEESSCCCCS-S
T ss_pred eecceeEEE---cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc--CCHHHHHhceEEECCCCcccc-c
Confidence 677888888 7777 99999999999999999999998876432 222221 122223333333444332221 2
Q ss_pred hhccccccCC-C-CCchHhhhccc------chh---------------HHhhhcccc-cccchhhhcCCCeEEEeCC-CC
Q 017575 120 FSKINMVDLP-L-GATEDRVCGTI------DIE---------------KALTEGVKA-FEPGLLAKANRGILYVDEV-NL 174 (369)
Q Consensus 120 ~~~~~~~~~~-~-~~~~~~~~~~~------~~~---------------~~~~~g~~~-~~~g~~~~a~~~vl~lDE~-~~ 174 (369)
++..++.... . ....+.+.... +.. ..+++|+++ ..-++....+|.++++||| ..
T Consensus 1122 ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~ 1201 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201 (1284)
T ss_dssp BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSS
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 2222211100 0 11111111000 000 112333322 1112222238999999999 78
Q ss_pred CCHHHHHHHHHHHhc
Q 017575 175 LDDHLVDVLLDSAAS 189 (369)
Q Consensus 175 l~~~~~~~L~~~l~~ 189 (369)
+|+.....+.+.+++
T Consensus 1202 lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1202 LDTESEKVVQEALDK 1216 (1284)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999888888864
No 151
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.20 E-value=3.5e-07 Score=99.38 Aligned_cols=141 Identities=22% Similarity=0.237 Sum_probs=78.8
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcceeec---CCCCCCCCCCcchhhhhhhhhhhccccchh
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKVVV---GDPYNSDPEDPEAMGIEVRESVVKGEELSI 118 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++.+++.+ ..|. +.|+||+||||||++++|.++..+.++.. +.+.. ..+...+++.+..+.|....++
T Consensus 1093 ~VL~~isl~I---~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~--~i~~~~lR~~i~~V~Qdp~LF~- 1166 (1321)
T 4f4c_A 1093 EILKGLSFSV---EPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK--TLNPEHTRSQIAIVSQEPTLFD- 1166 (1321)
T ss_dssp CSEEEEEEEE---CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT--TBCHHHHHTTEEEECSSCCCCS-
T ss_pred ccccceeEEE---CCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh--hCCHHHHHhheEEECCCCEeeC-
Confidence 3678888888 6777 99999999999999999999998765321 22221 1223334444444444333332
Q ss_pred hhhccccc-cC-CCCCchHhhhccc------chhHH---------------hhhcccccc-cchhhhcCCCeEEEeCC-C
Q 017575 119 TFSKINMV-DL-PLGATEDRVCGTI------DIEKA---------------LTEGVKAFE-PGLLAKANRGILYVDEV-N 173 (369)
Q Consensus 119 ~~~~~~~~-~~-~~~~~~~~~~~~~------~~~~~---------------~~~g~~~~~-~g~~~~a~~~vl~lDE~-~ 173 (369)
.+++.++. .. +...+.++++..+ +.... +++|+++.. -++....+|.|++|||+ .
T Consensus 1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence 22322221 11 1222333322111 11111 222322211 11111128999999999 7
Q ss_pred CCCHHHHHHHHHHHhc
Q 017575 174 LLDDHLVDVLLDSAAS 189 (369)
Q Consensus 174 ~l~~~~~~~L~~~l~~ 189 (369)
.+|++....+.+.+++
T Consensus 1247 aLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDR 1262 (1321)
T ss_dssp STTSHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8999988888888865
No 152
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.18 E-value=4.2e-07 Score=98.78 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=35.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.+++.+++.+ ..|. +.|+||+||||||++++|.+..++.++
T Consensus 432 ~vL~~isl~i---~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 432 PILRGMNLRV---NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp CSEEEEEEEE---CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred ceeeceEEee---cCCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 3577788888 6777 999999999999999999999988764
No 153
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.12 E-value=5.7e-06 Score=73.56 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=21.4
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++|+||||||||+++++|+...
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 49999999999999999999875
No 154
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.11 E-value=1.9e-06 Score=70.83 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=36.9
Q ss_pred ccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 38 IVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
-+|...+++.+++.+ ..|. +.|+||+|+|||||+++|++.+ +.
T Consensus 16 ~~g~~~~l~~vsl~i---~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~ 59 (158)
T 1htw_A 16 RFGKKFAEILLKLHT---EKAIMVYLNGDLGAGKTTLTRGMLQGI-GH 59 (158)
T ss_dssp HHHHHHHHHHHHHCC---SSCEEEEEECSTTSSHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHhcccccc---CCCCEEEEECCCCCCHHHHHHHHHHhC-CC
Confidence 356666788889988 7787 8999999999999999999999 44
No 155
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.09 E-value=3.7e-07 Score=76.27 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.5
Q ss_pred CCCe-eEEecCCCCChhHHHHHH
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSL 77 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~l 77 (369)
..|. ++|+||||||||||++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 5677 999999999999999953
No 156
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.05 E-value=6.7e-06 Score=76.76 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=25.1
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccCcc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
..|.++|+||+||||||+++++++.+++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 34449999999999999999999998764
No 157
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.00 E-value=2.3e-06 Score=78.40 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.4
Q ss_pred CeeEEecCCCCChhHHHHHHHhccC
Q 017575 58 GGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 58 g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.+++|+||||||||+|+++++..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3499999999999999999998774
No 158
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.99 E-value=1.8e-06 Score=73.20 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=22.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|+||||+||||+++.|++.++
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 88999999999999999999986
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.94 E-value=2.1e-06 Score=89.33 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=34.7
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCccee
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIKV 86 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~~ 86 (369)
.+++.+++.+ ..|. +.|+||||+|||||+++|++++++..+
T Consensus 687 ~iL~dVSl~I---~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 687 PQITDINFQC---SLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp CSEEEEEEEE---ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred eeeeccEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3566777777 6777 999999999999999999999988753
No 160
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.84 E-value=1e-05 Score=72.66 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=22.1
Q ss_pred eEEecCCCCChhHHHHHHHhccCcce
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+.|+||||+|||||+++|++...+..
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 78999999999999999999987654
No 161
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.84 E-value=2.5e-06 Score=86.61 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHH
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTV 74 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla 74 (369)
.+++.+++.+ ..|. +.|+||||||||||+
T Consensus 32 ~~L~~vsl~i---~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEI---PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEE---ETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEE---CCCCEEEEECCCCCCHHHHh
Confidence 4677888888 7787 999999999999997
No 162
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.78 E-value=9.9e-06 Score=73.77 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..+++.+++.+ ..|. +.|+||||+|||||+++|++++
T Consensus 113 ~~vL~~vsl~i---~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGI---PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTC---TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEe---cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45788888888 7777 9999999999999999999998
No 163
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.71 E-value=1.4e-05 Score=70.59 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=24.5
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|...+++.+++.+ ..|. +.|.||+||||||++++|++.++
T Consensus 9 ~~~~~~l~~isl~i---~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 9 SGVDLGTENLYFQS---MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -----------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCceeecceeccC---CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36667888999998 6777 99999999999999999999874
No 164
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.70 E-value=3.7e-05 Score=65.63 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=40.7
Q ss_pred cCCCeEEEeCCCCC--CH-HHH--HHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeecC
Q 017575 162 ANRGILYVDEVNLL--DD-HLV--DVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGT 236 (369)
Q Consensus 162 a~~~vl~lDE~~~l--~~-~~~--~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~~ 236 (369)
.++.+++|||.+.+ +. +.. ..++..++.. ....+.+|.++++ +..++.++++|+..++++..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~------------r~~~~~iil~tq~-~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTH------------RHQGIDIFVLTQG-PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGT------------TTTTCEEEEEESC-GGGBCHHHHTTEEEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhc------------CcCCeEEEEECCC-HHHHhHHHHHHhheEEEEcC
Confidence 34789999999776 21 111 1233333321 1234667777876 45699999999999999877
Q ss_pred C
Q 017575 237 V 237 (369)
Q Consensus 237 ~ 237 (369)
+
T Consensus 153 ~ 153 (199)
T 2r2a_A 153 N 153 (199)
T ss_dssp C
T ss_pred c
Confidence 4
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.69 E-value=2e-05 Score=81.99 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|+||||+||||++|+++...
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 4455 9999999999999999997653
No 166
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.69 E-value=1.7e-05 Score=68.81 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..++.+++.+ ..|. +.|+||+|||||||+++|+++.+
T Consensus 11 ~~l~~isl~i---~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 11 SSGLVPRGSM---NNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp --------------CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred ccccCCceec---CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467888888 6777 99999999999999999999884
No 167
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.61 E-value=7.9e-05 Score=69.99 Aligned_cols=29 Identities=34% Similarity=0.667 Sum_probs=25.4
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
..|. ++|+||+||||||++++|++.+++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 4555 9999999999999999999998754
No 168
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.55 E-value=5.3e-05 Score=79.02 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=20.6
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHh
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~ 79 (369)
..|. ++|+||||+||||++|.++.
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556 99999999999999999943
No 169
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.54 E-value=3.9e-05 Score=65.36 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=24.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. +.|+|||||||||++++|++..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566 89999999999999999999875
No 170
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.53 E-value=2.2e-05 Score=72.74 Aligned_cols=48 Identities=27% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCccccChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
+++.-+|...+++.+++.+ ..|. +.|+||||+|||||++++++.+.+.
T Consensus 34 ~~~~~~~~~~~l~~i~~~~---~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 34 RADHRAAVRDLIDAVLPQT---GRAIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp SHHHHHHHHHHHHHHGGGC---CCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CcccccChHHHHHhCCccc---CCCeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 3344455566788888887 6676 9999999999999999999887543
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=3.4e-05 Score=65.74 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
...+.+++.+ ..+. ++|+|||||||||+++.|++.++
T Consensus 13 ~~~~~~~~~~---~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 13 LGTENLYFQS---NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCceeEec---CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3577888887 5665 99999999999999999998873
No 172
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.52 E-value=1.6e-05 Score=78.29 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=35.8
Q ss_pred cccChHHHHHHhhh-hhccCCCCe-eEEecCCCCChhHHHHH--HHhccCc
Q 017575 37 AIVGQEEMKLCLLL-NVIDPKIGG-VMIMGDRGTGKSTTVRS--LVDLLPV 83 (369)
Q Consensus 37 ~i~G~~~~~~~l~~-~l~~~~~g~-vlL~Gp~G~GKTtla~~--la~~l~~ 83 (369)
.+.+...+++.+++ .+ ..|. ++|+||||||||||+++ ++++.++
T Consensus 20 ~~~~g~~~Ld~i~~G~i---~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~ 67 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGL---PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF 67 (525)
T ss_dssp EECCCCTTHHHHTTSSE---ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred cccCCchhHHHhcCCCC---CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence 34444567889998 87 6777 99999999999999999 6788764
No 173
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.51 E-value=2e-05 Score=67.86 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=31.2
Q ss_pred cChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+|+..+++.+ ..|. +.|+||||||||||+++|+++ ++..
T Consensus 10 ~g~~~~l~~i-------~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~ 49 (208)
T 3b85_A 10 LGQKHYVDAI-------DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS 49 (208)
T ss_dssp HHHHHHHHHH-------HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred HhHHHHHHhc-------cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence 4666666664 3455 899999999999999999999 7654
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.49 E-value=3.9e-05 Score=67.93 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=33.6
Q ss_pred cccc-ChHHHHHHhhhhhccCCC---Ce-eEEecCCCCChhHHHHHHHhccC
Q 017575 36 TAIV-GQEEMKLCLLLNVIDPKI---GG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 36 ~~i~-G~~~~~~~l~~~l~~~~~---g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+..+ +...+++.+++.+ .. |. +.|+|++||||||+++.|++.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i---~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEV---KPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------CHHHHHHHHTT---HHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEecCcchhhhhhhhhh---hhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3335 6667899999998 44 65 99999999999999999999774
No 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.48 E-value=5.1e-05 Score=65.10 Aligned_cols=27 Identities=41% Similarity=0.698 Sum_probs=24.2
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. +.|+|||||||||++++|+++++
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5677 88999999999999999999985
No 176
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.46 E-value=6.8e-05 Score=69.67 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=39.7
Q ss_pred CCccccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..++ ...+++.+ +.+ ..|. +.|+||||+|||||+++|++...+..
T Consensus 50 ~l~~~~~tg~~ald~l-l~i---~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 50 VIDQPFILGVRAIDGL-LTC---GIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CCCSEECCSCHHHHHH-SCE---ETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ccceecCCCCEEEEee-eee---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 4555565 45688888 888 6777 99999999999999999999997664
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=6.5e-05 Score=62.91 Aligned_cols=26 Identities=19% Similarity=0.538 Sum_probs=23.4
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|. +.|+||+||||||+++.|++..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455 99999999999999999999875
No 178
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.44 E-value=0.0001 Score=70.61 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCccccC-hHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 34 PFTAIVG-QEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 34 ~~~~i~G-~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+++..++ ...+++.+ +.+ ..|. +.|+||+|||||||+++|++...+..
T Consensus 136 ~v~~~~~tg~~vld~v-l~i---~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 136 PIEHVLDTGVRAINAL-LTV---GRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CCCSBCCCSCHHHHHH-SCC---BTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ccceecCCCceEEeee-EEe---cCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 4455565 45688888 888 6777 99999999999999999999997764
No 179
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.43 E-value=6.6e-05 Score=63.21 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.2
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|+|||||||||+++.|++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4566 9999999999999999999984
No 180
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.42 E-value=0.00011 Score=63.07 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. +.|+||||||||||+++|++.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4555 999999999999999999999863
No 181
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.41 E-value=7.4e-05 Score=69.00 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=34.2
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+.+.+.+.+ ..|. ++|+||+|+||||++++|++++++..
T Consensus 159 ~~l~~l~~~i---~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~ 199 (330)
T 2pt7_A 159 QAISAIKDGI---AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 199 (330)
T ss_dssp HHHHHHHHHH---HHTCCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred HHHhhhhhhc---cCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 3677888888 5565 99999999999999999999998654
No 182
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.41 E-value=4.8e-05 Score=71.21 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=32.6
Q ss_pred HHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 46 LCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 46 ~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+.+.+++ ..|. ++|+||+|+||||++++|++++++..
T Consensus 166 ~~l~~~i---~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 166 SFLRRAV---QLERVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp HHHHHHH---HTTCCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred HHHHHHH---hcCCEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 7888888 5666 99999999999999999999998654
No 183
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=0.00019 Score=60.35 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=22.1
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
+.++++|||++.++++....|..+.++
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC
Confidence 356999999999988888887777765
No 184
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.36 E-value=8e-05 Score=75.56 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=27.2
Q ss_pred HHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHH
Q 017575 43 EMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLV 78 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la 78 (369)
.+++.+++.+ ..|. +.|+||||||||||++++.
T Consensus 336 ~~L~~vsl~I---~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKI---PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEE---ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEe---cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3567778887 6777 9999999999999997653
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.35 E-value=0.00014 Score=61.81 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=33.4
Q ss_pred CCCCccccChH----HHHHHhhhhhccC-CC---CeeEEecCCCCChhHHHHHHHhccC
Q 017575 32 VYPFTAIVGQE----EMKLCLLLNVIDP-KI---GGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 32 ~~~~~~i~G~~----~~~~~l~~~l~~~-~~---g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+|+++++.. .++..+...+... .. .+++|+||+|||||+++++++..+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34677887643 2333333222211 11 4599999999999999999998874
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=9.1e-05 Score=61.27 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.8
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|||||||||+++.|++.++
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 187
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.33 E-value=0.0001 Score=73.86 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.9
Q ss_pred eeEEecCCCCChhHHHHHHHhccCc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.+.|+||+||||||++++|+++..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 3999999999999999999999855
No 188
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.31 E-value=0.00011 Score=62.58 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.1
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. +.|+||+||||||+++.|++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566 99999999999999999999884
No 189
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.31 E-value=6.3e-05 Score=65.64 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=19.6
Q ss_pred HHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHH-hccC
Q 017575 45 KLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLV-DLLP 82 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la-~~l~ 82 (369)
...+++.+ ..|. +.|+||+||||||++++|+ +..+
T Consensus 17 ~~~~sl~v---~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLK---SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCE---ECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCccc---CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55667777 6677 8999999999999999999 8874
No 190
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.30 E-value=9.3e-05 Score=63.04 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|. +.|+||||+||||++++|++..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 344 99999999999999999999875
No 191
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.29 E-value=0.00011 Score=63.57 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=24.4
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. +.|+||||+|||||+++|++..++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3555 899999999999999999999874
No 192
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=0.00011 Score=61.92 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.7
Q ss_pred eEEecCCCCChhHHHHHHHhccCcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
+.|+|||||||||++++|++++++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred EEEECCCCCCHHHHHHHHHhhCCcc
Confidence 7899999999999999999998643
No 193
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00033 Score=67.71 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=35.7
Q ss_pred CCcccc-ChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 34 PFTAIV-GQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 34 ~~~~i~-G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+|..+- +|..++..+...+.. ..+.++|.|++|||||+++..++..+.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 565554 677788777666532 223699999999999999999887774
No 194
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.26 E-value=0.00018 Score=70.36 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..+.+.+.+++ ..|. ++|+||+||||||+++++++++++..
T Consensus 247 ~~~l~~l~~~v---~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 247 SGVLAYLWLAI---EHKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHHHHHHHH---HTTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 34567777777 4565 99999999999999999999997654
No 195
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.00012 Score=62.30 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
.|. ++|+|||||||||++++|++.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 455 9999999999999999999887
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.23 E-value=0.00017 Score=61.84 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. ++|+||+|+||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3455 899999999999999999999864
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.20 E-value=0.00018 Score=61.28 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. ++|+|||||||||+++.|++.+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3455 899999999999999999999843
No 198
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.19 E-value=0.00015 Score=62.15 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|. +.|+||+||||||+++.|+++++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455 89999999999999999999875
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.16 E-value=0.0002 Score=59.36 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
.|. ++|+|||||||||+++.|++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 345 9999999999999999999876
No 200
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.16 E-value=0.00029 Score=72.45 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
.|. ++|+||||+||||++|+++++.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 455 9999999999999999999875
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.13 E-value=0.00032 Score=65.82 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=28.7
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++.+.+.+ ..|. ++|+||||+||||+++++++...
T Consensus 158 ~l~~~~~~i---~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNI---PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCC---TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhccccc---CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 455555665 5665 99999999999999999998763
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.12 E-value=0.00021 Score=59.30 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|+|||||||+++.|+..++
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999874
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.10 E-value=0.00023 Score=61.52 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. +.|+||||||||||++++++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5677 99999999999999999998553
No 204
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.09 E-value=0.0002 Score=58.88 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.||+||||||+++.|+..++
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998873
No 205
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.08 E-value=0.00022 Score=65.26 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. +.|+||+|||||||+++|++++++
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 4566 999999999999999999999864
No 206
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.08 E-value=0.00049 Score=68.33 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=27.6
Q ss_pred HHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 44 MKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
...++...+ ..+.++|.|||||||||+++.+...+.
T Consensus 194 Q~~Av~~~~---~~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 194 QASVLDQLA---GHRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp HHHHHHHHT---TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344555444 455599999999999999999988764
No 207
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.07 E-value=0.00026 Score=72.38 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=22.2
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhcc
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
|. ++|+||||+||||++|+++++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 55 9999999999999999999876
No 208
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00031 Score=67.76 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.9
Q ss_pred HhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 47 CLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 47 ~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+.+.+ ..|. ++|+||+|||||||+|+|+++..+..
T Consensus 130 ~vsl~i---~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 130 KIRMSN---FEGPRVVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp HHHHHS---SSCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred cCceEe---CCCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence 567776 6777 99999999999999999999997654
No 209
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.06 E-value=0.00057 Score=72.16 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.3
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhccC
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|. ++|+||||+||||++|.+ +++.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 55 999999999999999999 7764
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.05 E-value=0.00026 Score=59.51 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.1
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+||||+||||+++.|++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998744
No 211
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.03 E-value=0.00031 Score=63.61 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 44 MKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
+++.+...+ ..|. ++|+||||+|||||++.+++.+.+.
T Consensus 24 ~Ld~i~~~l---~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 24 GINDKTLGA---RGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp THHHHHCSB---CTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCC---CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 466777777 6787 9999999999999999999988654
No 212
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00018 Score=65.46 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=25.8
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. ++|+||+||||||+++.|++.+.+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3455 89999999999999999999987653
No 213
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00034 Score=59.65 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|. ++|+|||||||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455 99999999999999999998875
No 214
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.01 E-value=0.00048 Score=63.38 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+......++|++..++.+...+. ..+.++|+||+|+|||++++.++...
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~--~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLE--NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCCChHhcCChHHHHHHHHHHHh--cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455678999988888877763 12349999999999999999998765
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.99 E-value=0.00038 Score=66.02 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.3
Q ss_pred eeEEecCCCCChhHHHHHHHhccCcce
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.+.|+||||+|||||+++|+++.++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~ 97 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEE 97 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTST
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccC
Confidence 489999999999999999999987654
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.99 E-value=0.00033 Score=61.39 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.1
Q ss_pred CCCe-eEEecCCCCChhHHHHHHH
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLV 78 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la 78 (369)
..|. ++|+||||+|||||+++++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 5666 9999999999999999999
No 217
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.98 E-value=0.00027 Score=64.73 Aligned_cols=45 Identities=27% Similarity=0.212 Sum_probs=32.4
Q ss_pred ccChHHHHHHhhhhhccCC-CCe---eEEecCCCCChhHHHHHHHhccC
Q 017575 38 IVGQEEMKLCLLLNVIDPK-IGG---VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 38 i~G~~~~~~~l~~~l~~~~-~g~---vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.+|....+..+...+.... .+. +.|.||+||||||++++|++++.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455566666666654221 122 88999999999999999999985
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.96 E-value=0.00034 Score=61.55 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred eEEecCCCCChhHHHHHHH---hccC
Q 017575 60 VMIMGDRGTGKSTTVRSLV---DLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la---~~l~ 82 (369)
++|+|||||||||+++.|+ +...
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 9999999999999999999 5543
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.96 E-value=0.00043 Score=58.73 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|. +.|+||+|+|||||++.|.+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 444 89999999999999999998875
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.95 E-value=0.00041 Score=65.89 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=31.1
Q ss_pred cChHHHHHHhhhhhccCCCCe---eEEecCCCCChhHHHHHHHhcc
Q 017575 39 VGQEEMKLCLLLNVIDPKIGG---VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~g~---vlL~Gp~G~GKTtla~~la~~l 81 (369)
+|... +..+++.+ ..|. +.|+||||+|||||+++|++..
T Consensus 25 y~~~~-L~~vsl~i---~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 25 FDSLP-DQLVNKSV---SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC--C-HHHHHHSC---C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ECCee-cCCCceEe---cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 45444 88899998 6675 7899999999999999999985
No 221
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.94 E-value=0.00033 Score=58.07 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.8
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.++|.|||||||||+++.|+..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998874
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.93 E-value=0.00049 Score=65.49 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=25.2
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
..|. ++|+||+|+||||+++++++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3455 9999999999999999999998654
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.00039 Score=60.07 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHHHhhh-hhccCCCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 44 MKLCLLL-NVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 44 ~~~~l~~-~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.++.+.. .+ ..|. ++|+||||+|||||++.++....+
T Consensus 11 ~Ld~~~~ggi---~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 11 DFDKLIQGGI---PQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp HHHGGGTTSE---ETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC---cCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3444444 44 5666 999999999999999999977643
No 224
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.93 E-value=0.00039 Score=57.64 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHh
Q 017575 60 VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~ 79 (369)
++|.|+|||||||+++.|+.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 78999999999999999998
No 225
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.92 E-value=0.00036 Score=58.32 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.9
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.++|+||+||||||+++.|+..++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998873
No 226
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.92 E-value=0.00034 Score=59.49 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|++||||||+++.|++.++
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998873
No 227
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.90 E-value=0.00033 Score=65.54 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=25.3
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
+. +.|+||+|||||||+++|++++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 55 99999999999999999999997654
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.90 E-value=0.00039 Score=63.31 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.9
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
|. ++|+||+||||||+++.|++++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 44 99999999999999999999997654
No 229
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00037 Score=60.26 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.8
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.+.|+||+||||||+++.|++.++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998763
No 230
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.87 E-value=0.0012 Score=60.89 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=38.9
Q ss_pred CCCCCccccChHHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 31 PVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 31 ~~~~~~~i~G~~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+......++|++..++.+.. + ..+.++|+||+|+|||++++.++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l---~~~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-L---RAPITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-T---CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHhcChHHHHHHHHH-h---cCCcEEEECCCCCCHHHHHHHHHHhcC
Confidence 44456678999988888877 6 335699999999999999999987764
No 231
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.86 E-value=0.00058 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.5
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|-.+|+||+||||||++++|..++.+
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4555899999999999999999998854
No 232
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.83 E-value=0.00099 Score=60.14 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|||||||||+++.++..++
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999988763
No 233
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00041 Score=64.59 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=25.7
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
..|. ++|+||+|+||||+++.|++.+.+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 3455 99999999999999999999987543
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.82 E-value=0.00048 Score=57.53 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|+|||||||+++.|+..+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999766
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.80 E-value=0.00046 Score=63.51 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCcce
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
.|. ++|+||+|+||||+++.|++.+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455 99999999999999999999987653
No 236
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.80 E-value=0.00083 Score=59.38 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|+|||||||+++.|+..++
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999874
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.80 E-value=0.00043 Score=66.81 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.3
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
..|. ++|+||+||||||+++.|++++.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 4555 9999999999999999999998654
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00053 Score=56.32 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|.|||||||||+++.| ..+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEECCCCCCHHHHHHHH-HHC
Confidence 789999999999999999 554
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.00073 Score=56.57 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=20.5
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++|+|++||||||+++.|+..
T Consensus 13 I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999988
No 240
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.79 E-value=0.00057 Score=62.35 Aligned_cols=27 Identities=44% Similarity=0.533 Sum_probs=23.8
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. +.|+||+||||||++++|++++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455 99999999999999999999876
No 241
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00058 Score=58.18 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=19.2
Q ss_pred eEEecCCCCChhHHHHHHHh
Q 017575 60 VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~ 79 (369)
+.|+||+||||||+++.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999998
No 242
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.79 E-value=0.00048 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|+|||||||+++.|+..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 243
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00052 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998774
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.76 E-value=0.0011 Score=56.43 Aligned_cols=27 Identities=26% Similarity=0.134 Sum_probs=23.5
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+. +.|.||+||||||+++.|++.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445 99999999999999999999874
No 245
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.76 E-value=0.00082 Score=57.29 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.5
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+. +.|+|++||||||+++.|++.++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4455 89999999999999999999873
No 246
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.76 E-value=0.00055 Score=60.61 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|||||||||+++.|++.++
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 78999999999999999998774
No 247
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.75 E-value=0.00058 Score=56.98 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|+|+|||||||+++.|+..++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998773
No 248
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.74 E-value=0.00075 Score=59.66 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.8
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
.|. +.|+||+||||||+++.|+..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 344 9999999999999999999555
No 249
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.00056 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|.|+|||||||+++.++..+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999876
No 250
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.74 E-value=0.00064 Score=57.75 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
+.|+|++||||||+++.|++ +
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEECCCCcCHHHHHHHHHH-C
Confidence 78999999999999999999 5
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.72 E-value=0.00063 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.7
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.++|+|+|||||||+++.++..++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999998763
No 252
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.72 E-value=0.0007 Score=56.29 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|. +.|+|++||||||+++.+++.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344 89999999999999999999873
No 253
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.71 E-value=0.00074 Score=57.96 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|||||||||+++.|+..++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 254
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.0011 Score=56.70 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=22.1
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHh
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~ 79 (369)
..|. ++|+||||+||||+++.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5666 99999999999999999998
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.70 E-value=0.00065 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|++||||||+++.|++.++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 78999999999999999999874
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.70 E-value=0.0011 Score=61.21 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=27.8
Q ss_pred HHHHhhhhhccCCCCe---eEEecCCCCChhHHHHHHHhccC
Q 017575 44 MKLCLLLNVIDPKIGG---VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 44 ~~~~l~~~l~~~~~g~---vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++..+...+ ..|. ++|+||+|+||||++++|++.+.
T Consensus 11 il~~l~~~i---~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRI---EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTT---TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445555555 3332 89999999999999999998875
No 257
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.00069 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.3
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|++||||||+++.|+..++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998774
No 258
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.67 E-value=0.00065 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=17.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEECCC----CHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999998874
No 259
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.67 E-value=0.00049 Score=66.45 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=30.3
Q ss_pred HHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhccCcce
Q 017575 45 KLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++.+++.+ ...-+.|+||+|||||||+++|++++++..
T Consensus 20 l~~vsl~i---~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 20 FFARTFDF---DELVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp EEEEEEEC---CSSEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ccceEEEE---ccceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 34556666 453389999999999999999999998764
No 260
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.00091 Score=55.94 Aligned_cols=26 Identities=42% Similarity=0.563 Sum_probs=23.1
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.|. ++|+|++||||||+++.++..+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 444 99999999999999999999875
No 261
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.66 E-value=0.00074 Score=57.92 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.9
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|||||||||+++.|+..++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 262
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.65 E-value=0.00077 Score=55.36 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.9
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++|.|++||||||+++.|+..++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999998873
No 263
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.00075 Score=56.57 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|+|||||||+++.|+..++
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998763
No 264
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.65 E-value=0.00076 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|||||||+|.++.|+..+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 68999999999999999998874
No 265
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.64 E-value=0.00075 Score=56.74 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998774
No 266
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.62 E-value=0.0008 Score=57.07 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|+|+|||||||+++.|+..++
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998763
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.62 E-value=0.00079 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998874
No 268
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.59 E-value=0.00085 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.6
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|+|||||||+++.|+..++
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999874
No 269
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.58 E-value=0.00097 Score=57.77 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999998774
No 270
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.58 E-value=0.00087 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.6
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|||||||||+++.|+..++
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998874
No 271
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.56 E-value=0.00095 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|++||||||+++.|+..++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 272
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.55 E-value=0.00093 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|++||||||+++.++..++
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998763
No 273
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.55 E-value=0.00096 Score=57.54 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|+|||||||+|.++.|+..+.
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 88999999999999999998874
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.55 E-value=0.00095 Score=57.50 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|+|||||||+++.|+..+.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998774
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.54 E-value=0.0011 Score=55.60 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=21.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|+||+|+|||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999987765
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.50 E-value=0.0013 Score=55.83 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.3
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|++||||||+++.|+..++
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998774
No 277
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.49 E-value=0.0012 Score=57.46 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
..|. +.|.|++||||||+++.|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4455 999999999999999999988
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.49 E-value=0.0013 Score=55.70 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|.|.|++||||||+++.|+..+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987
No 279
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0011 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|.|.|++||||||+++.|+..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999873
No 280
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.47 E-value=0.0014 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. ++|.|++||||||+++.|++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4565 99999999999999999999885
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.45 E-value=0.0018 Score=60.20 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. +.|+||||+|||||++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5677 9999999999999999999987
No 282
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.45 E-value=0.0018 Score=56.38 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
..|. ++|+||||+||||+++.++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4566 999999999999999999983
No 283
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.0012 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
.|. ++++||+|+||||++..++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 455 8899999999999887766555
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.43 E-value=0.0023 Score=59.44 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 45 KLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++.+...+ .|. +.|+||||+|||||+++|++...
T Consensus 206 l~~L~~~~----~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEAL----TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHH----TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhc----CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 34444444 355 99999999999999999999885
No 285
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.43 E-value=0.0012 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|.|++||||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 286
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.42 E-value=0.0012 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|++||||||+++.|+..++
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 287
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.38 E-value=0.0018 Score=56.37 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. +.|.||+||||||+++.|++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3566 999999999999999999999863
No 288
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0013 Score=56.33 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 289
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.36 E-value=0.0014 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..+.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998774
No 290
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.35 E-value=0.0011 Score=60.18 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=19.0
Q ss_pred eEEecCCCCChhHHHHHHHhc-cCc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL-LPV 83 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~-l~~ 83 (369)
++|+||+|+|||||++.|++. ..+
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-----
T ss_pred EEEECCCCCCHHHHHHHHhCCCccC
Confidence 699999999999999998876 443
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.35 E-value=0.0026 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.0
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
|. +.|+||||+|||||+++|+++..+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccccc
Confidence 44 8999999999999999999998654
No 292
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.35 E-value=0.0015 Score=56.96 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|.||+||||||+++.|++.+.
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998773
No 293
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.34 E-value=0.0014 Score=56.64 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.34 E-value=0.0015 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|||||||||+++.|+..++
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998763
No 295
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.33 E-value=0.0015 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|++||||||+++.|+..++
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 296
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.32 E-value=0.0015 Score=56.79 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.|+|||||||+++.|+..+.
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998874
No 297
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.32 E-value=0.00039 Score=60.47 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.4
Q ss_pred eEEecCCCCChhHHHHHHHhccCcce
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVIK 85 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~~ 85 (369)
++|+||+||||||++++|++++.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCC
Confidence 77899999999999999999997653
No 298
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.31 E-value=0.0019 Score=58.29 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.5
Q ss_pred eEEecCCCCChhHHHHHHHhccCc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+.|.||+||||||+++.|++.+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 899999999999999999999864
No 299
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.00078 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=23.0
Q ss_pred eEEecCCCCChhHHHHHHHhccCcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
+.|+|++||||||+++.|++++.+.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc
Confidence 7899999999999999999998754
No 300
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.29 E-value=0.0018 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|++|+|||||++.+++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999998764
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.28 E-value=0.0018 Score=57.40 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|+|.|+|||||||+++.|+..+
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999875
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.25 E-value=0.002 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|++|+|||||++.+++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999875
No 303
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.24 E-value=0.0021 Score=57.62 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. ++|+||||+|||||++.++..+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4566 99999999999999999997654
No 304
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0021 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+. +.|+|++||||||+++.|++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3444 99999999999999999998763
No 305
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0021 Score=54.28 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
+.|.|++||||||+++.|++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 899999999999999999986
No 306
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.21 E-value=0.002 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.7
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.+.|.|++||||||+++.+++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 388999999999999999999773
No 307
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.17 E-value=0.0027 Score=51.27 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.2
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|-.+|+||+|+|||+++.+|.-.+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44448999999999999999998665
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.15 E-value=0.0025 Score=56.20 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|.|.|++||||||+++.|+..++
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999999774
No 309
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.11 E-value=0.001 Score=56.81 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.8
Q ss_pred eEEecCCCCChhHHHHHHHhccCc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+.|.|++||||||+++.|+..+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999988753
No 310
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.10 E-value=0.0032 Score=58.24 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=31.3
Q ss_pred ChHHHHHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 40 GQEEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 40 G~~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+...++..+.... ..+. +.|+|+||+||||+++.+++.+.
T Consensus 41 ~~~~~~~~l~~~~---~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 41 LSTQLLDAIMPYC---GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHHHHGGGC---SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccc---CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4445666666665 5555 99999999999999999998764
No 311
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.09 E-value=0.0069 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.4
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
..+++++.||+|+|||.++-.++...
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34459999999999999998777655
No 312
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.09 E-value=0.0027 Score=62.55 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. +.|+|++||||||++++|++.+.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4565 899999999999999999999864
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.08 E-value=0.0047 Score=56.04 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.|. +.|+||||+|||||+++|+ ...+.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 345 8999999999999999999 77543
No 314
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.06 E-value=0.0028 Score=57.88 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.8
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+||+||||||+++.|+..++
T Consensus 8 i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999885
No 315
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.05 E-value=0.0029 Score=54.29 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=19.4
Q ss_pred eEEecCCCCChhHHHHHHHh
Q 017575 60 VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~ 79 (369)
+.|.|++||||||+++.|++
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999998
No 316
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.03 E-value=0.0018 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.2
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|+|++|+|||||++.+++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4565 9999999999999999998765
No 317
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.98 E-value=0.0083 Score=50.54 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=37.8
Q ss_pred cCCCeEEEeCC------CCCCHHHHHHHHHHHhcCCceeeecceeeeecCceEEEeecCCCCCCCCHhHHhhhccceeec
Q 017575 162 ANRGILYVDEV------NLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVG 235 (369)
Q Consensus 162 a~~~vl~lDE~------~~l~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~li~t~n~~~~~l~~al~~R~~~~i~~~ 235 (369)
.+.++++|||+ ..++. ..+++++.++ |...-+|.|+|- -+++|.+.-+.+=++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~R-------------p~~~~vIlTGr~----ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPL---EEVISALNAR-------------PGHQTVIITGRG----CHRDILDLADTVSELR 178 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTS-------------CTTCEEEEECSS----CCHHHHHHCSEEEECC
T ss_pred CCCCEEEEeCCCccccCCCCCH---HHHHHHHHhC-------------cCCCEEEEECCC----CcHHHHHhCcceeeec
Confidence 45789999999 34554 4567777653 456668888884 4778888888744444
Q ss_pred C
Q 017575 236 T 236 (369)
Q Consensus 236 ~ 236 (369)
.
T Consensus 179 ~ 179 (196)
T 1g5t_A 179 P 179 (196)
T ss_dssp C
T ss_pred c
Confidence 3
No 318
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.97 E-value=0.0034 Score=52.99 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
+.|+|++||||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999875
No 319
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.97 E-value=0.0036 Score=56.89 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.+. ++++||+|+||||++..|++.+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 344 8999999999999999999998643
No 320
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.95 E-value=0.0032 Score=56.84 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.2
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|.|+|||||||+++.|+..+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999999853
No 321
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.95 E-value=0.0077 Score=59.80 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=35.9
Q ss_pred CCccccChHHHHHHhhhhhccCC-CCe-eEEecCCCCChhHHHHHHHhc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPK-IGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~-~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
....++|++..+..+...+.... ... ++|+||+|+||||||+.++..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 45678999988888877764211 223 999999999999999988754
No 322
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0032 Score=56.99 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.+. ++|+||+|+||||++..|+..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344 999999999999999999998864
No 323
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.90 E-value=0.0038 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.87 E-value=0.0047 Score=52.18 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.||+|+|||+++..++....
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999988763
No 325
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.87 E-value=0.0015 Score=59.49 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.|. +.|+||||+|||||+++|++...+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 455 9999999999999999999887543
No 326
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.0041 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|.||||+||||++..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566 9999999999999987665443
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.82 E-value=0.0038 Score=51.82 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++|+|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999875
No 328
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.82 E-value=0.0042 Score=52.39 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=26.5
Q ss_pred HHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHh
Q 017575 43 EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 43 ~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~ 79 (369)
.+++.+.+.. ....++++|++|+|||+|++.+.+
T Consensus 14 ~~l~~~~~~~---~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYK---KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTT---CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccC---CCcEEEEECCCCCCHHHHHHHHhc
Confidence 3555666554 455699999999999999999865
No 329
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.81 E-value=0.0045 Score=56.76 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=22.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+||+|||||+|+..|+..++
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999999885
No 330
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.80 E-value=0.0042 Score=56.56 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.1
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
.|. ++|.||||||||+|+..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445 899999999999999999875
No 331
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.79 E-value=0.0038 Score=58.27 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|-.+|+||||+||||++.+|+..+.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 445588999999999999999987764
No 332
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.72 E-value=0.0048 Score=56.72 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.||+||||||+++.|+..++
T Consensus 10 I~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcCcHHHHHHHHHHHcC
Confidence 88999999999999999999885
No 333
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.70 E-value=0.0045 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|.|++|+||||+++.+.+.+.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhcc
Confidence 88999999999999999988764
No 334
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.66 E-value=0.0057 Score=58.42 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
..++ ++|+||||+|||+++++|+.++.+.
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 4445 9999999999999999999988654
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.64 E-value=0.0051 Score=52.34 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|-.+|+||||+|||+++.+|.-.+.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445599999999999999999987774
No 336
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.61 E-value=0.0061 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~ 80 (369)
....++++|++|+|||+|++.+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3446999999999999999998864
No 337
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.61 E-value=0.011 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.+++++||..+++......++..+..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 57999999999999988888776643
No 338
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.60 E-value=0.0053 Score=55.10 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=19.1
Q ss_pred eEEecCCCCChhHHHHHHHh
Q 017575 60 VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~ 79 (369)
|+|.|++||||||+++.|+.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 339
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.59 E-value=0.0061 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++|+|++|+|||||++.+++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999874
No 340
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.56 E-value=0.0017 Score=61.60 Aligned_cols=28 Identities=36% Similarity=0.318 Sum_probs=24.7
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|-++|+||||+|||||+++|+.+++.
T Consensus 59 ~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 59 GGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp CSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5667999999999999999999888864
No 341
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.52 E-value=0.0064 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|+||+|||||++.+++..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999998754
No 342
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.52 E-value=0.0058 Score=58.03 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.6
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+||+|+|||||+++|++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999999999999875
No 343
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.52 E-value=0.0058 Score=56.70 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. ++|+||||+|||||+..++..+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556 999999999999999999887643
No 344
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.51 E-value=0.0073 Score=59.24 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
..|. ++|.||||+|||||++.+++...+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5676 999999999999999999998764
No 345
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.50 E-value=0.0068 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.||+|||||+++..++..++
T Consensus 6 i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEECCCcCCHHHHHHHHHHhCc
Confidence 78999999999999999998875
No 346
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.0082 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=20.4
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.+++++||++.++++....+..+.+.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999988877766665554
No 347
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.50 E-value=0.0061 Score=57.98 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|+|+|||||||+++.++..+.
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999988763
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.46 E-value=0.0063 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|.|++|+||||++..+...+.
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhH
Confidence 88999999999999999988774
No 349
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.46 E-value=0.0071 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|.|++||||||+++.++..++
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999999873
No 350
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.45 E-value=0.007 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=21.6
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++|.||+|||||+|+..++..++
T Consensus 13 i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCccCHHHHHHHHHHhCC
Confidence 88999999999999999998875
No 351
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.45 E-value=0.0059 Score=55.88 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.0
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.+. ++++||+|+||||++..|+..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344 8999999999999999999988643
No 352
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.40 E-value=0.0081 Score=54.99 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 163 NRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 163 ~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+|.+++|||| ..+|+.....|.+.+.+
T Consensus 241 ~~~~lllDEp~~~LD~~~~~~l~~~l~~ 268 (322)
T 1e69_A 241 PSPFYVLDEVDSPLDDYNAERFKRLLKE 268 (322)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 5789999999 78999999999988865
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.38 E-value=0.0066 Score=55.51 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|++|+||||+++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999886
No 354
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.37 E-value=0.0074 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.3
Q ss_pred CCCe-eEEecCCCCChhHHHHHHH
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLV 78 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la 78 (369)
..|. ++|+||||||||||++.++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 3455 9999999999999999654
No 355
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.36 E-value=0.0085 Score=60.35 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhccCCCCe-eEEecCCCCChhHHH-HHHHhcc
Q 017575 42 EEMKLCLLLNVIDPKIGG-VMIMGDRGTGKSTTV-RSLVDLL 81 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla-~~la~~l 81 (369)
....+++..++ .... .+|.||||||||+++ .++..++
T Consensus 192 ~~Q~~AV~~al---~~~~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 192 TSQKEAVLFAL---SQKELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp HHHHHHHHHHH---HCSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34566777666 3444 899999999999765 5555554
No 356
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.36 E-value=0.0045 Score=55.85 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.3
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|.|.||+||||||+++.++..++
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998764
No 357
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.33 E-value=0.008 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCeEEEeCC-CCCCHHHHHHHHHHHhc
Q 017575 163 NRGILYVDEV-NLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 163 ~~~vl~lDE~-~~l~~~~~~~L~~~l~~ 189 (369)
+|.++++||| +.+|+..+..|.++|.+
T Consensus 272 ~p~~lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 272 EISLLILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp TTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 6889999999 78899888888888764
No 358
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.33 E-value=0.0085 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.3
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998654
No 359
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.30 E-value=0.0098 Score=48.96 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.0
Q ss_pred eeEEecCCCCChhHHHHHHHh
Q 017575 59 GVMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~ 79 (369)
.++|.|++|+||||++..+..
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 399999999999999988865
No 360
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.30 E-value=0.008 Score=55.85 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|-++|+||||+|||+++++|+.+..
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHHhcc
Confidence 455689999999999999999998763
No 361
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.28 E-value=0.0091 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||||++.+.+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999988653
No 362
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.26 E-value=0.0088 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.4
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 9999999999999999987643
No 363
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.0095 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998764
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.17 E-value=0.01 Score=47.70 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.8
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||+|++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999998887543
No 365
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.17 E-value=0.0097 Score=55.50 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. ++|+||+|+|||++++.|++.+.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4555 99999999999999999998763
No 366
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.16 E-value=0.0083 Score=48.41 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 8999999999999999986543
No 367
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.15 E-value=0.01 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999997653
No 368
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.15 E-value=0.01 Score=50.96 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=23.0
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhccCc
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
|. |.|.|++||||||+++.++..+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45 899999999999999999988853
No 369
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.14 E-value=0.009 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|.|||||||||+++.|+..+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998773
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.13 E-value=0.01 Score=47.98 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999997544
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.09 E-value=0.0099 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccCc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+.|+|+||+|||||++.+++.+.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999987643
No 372
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.011 Score=47.77 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.4
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998764
No 373
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.08 E-value=0.024 Score=48.38 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHhc
Q 017575 164 RGILYVDEVNLLDDHLVDVLLDSAAS 189 (369)
Q Consensus 164 ~~vl~lDE~~~l~~~~~~~L~~~l~~ 189 (369)
.++++|||+..++++....|..+.+.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhC
Confidence 57999999999988877666555444
No 374
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.08 E-value=0.011 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.2
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||+|++.+.+.-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999987643
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.07 E-value=0.011 Score=47.70 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999987654
No 376
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.06 E-value=0.0072 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|.|++||||||+++.|+..+.
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999884
No 377
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.05 E-value=0.012 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.0
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||+|++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999887543
No 378
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.05 E-value=0.011 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 8999999999999999987543
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.04 E-value=0.012 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999987543
No 380
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.00 E-value=0.012 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999987553
No 381
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.00 E-value=0.011 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.4
Q ss_pred eeEEecCCCCChhHHHHHHHhccC
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
.++|+|+||+|||||++.+.+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999987753
No 382
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.013 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|.|++||||||+++.|+..++
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999884
No 383
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.98 E-value=0.0094 Score=51.66 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.|. |.|.|++||||||+++.|+..+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444 999999999999999999988853
No 384
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.96 E-value=0.012 Score=48.04 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 9999999999999999887643
No 385
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.96 E-value=0.025 Score=48.27 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=23.4
Q ss_pred CCCeEEEeCCCCCCHHHHHHHHHHHhcC
Q 017575 163 NRGILYVDEVNLLDDHLVDVLLDSAASG 190 (369)
Q Consensus 163 ~~~vl~lDE~~~l~~~~~~~L~~~l~~~ 190 (369)
+..++++||+..++++....+..+.+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence 4679999999999998888888877543
No 386
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.96 E-value=0.013 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.7
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
+++++|++|+|||+|++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 387
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.96 E-value=0.012 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.7
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||+|++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999998765
No 388
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.95 E-value=0.012 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|.||||+|||||+..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556 9999999999999998887654
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.93 E-value=0.012 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+|+|++|+|||||++.|.+...
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHcCCCc
Confidence 99999999999999999987653
No 390
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.92 E-value=0.011 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
..+.+.|+|+||+|||||++.+.+.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34459999999999999999998764
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.90 E-value=0.013 Score=47.16 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999998754
No 392
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.90 E-value=0.013 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+.+.-
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 39999999999999999987643
No 393
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.88 E-value=0.014 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 9999999999999999987643
No 394
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.86 E-value=0.013 Score=52.95 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.9
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCcc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
.+. +.++|++|+||||++..+++.+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 344 8899999999999999999998643
No 395
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.85 E-value=0.014 Score=46.86 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998654
No 396
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.85 E-value=0.013 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
.++++|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3999999999999999999765
No 397
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.85 E-value=0.012 Score=48.16 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.6
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987543
No 398
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.83 E-value=0.019 Score=55.09 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..|. ++|.|+||+|||+|+..++....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677 99999999999999999988764
No 399
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.82 E-value=0.013 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.1
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||+|++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 38999999999999999987653
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.79 E-value=0.015 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998643
No 401
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.79 E-value=0.022 Score=51.95 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=26.1
Q ss_pred HHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 45 KLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
++.+.--+ ..|. ++|.|+||+|||+|+..++...
T Consensus 58 LD~~lgGl---~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSB---CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCC---CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444445 6777 9999999999999998887544
No 402
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.78 E-value=0.014 Score=50.08 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.|. +.+.|++|+||||.++.++..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 355 999999999999999999998864
No 403
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.77 E-value=0.017 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++++|++|+|||+|++.+.+...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 99999999999999999987664
No 404
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.77 E-value=0.015 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999987643
No 405
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.77 E-value=0.015 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 9999999999999999987653
No 406
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.76 E-value=0.012 Score=48.57 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.5
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998765
No 407
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.76 E-value=0.015 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.5
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
.++++|++|+|||+|++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998653
No 408
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.74 E-value=0.015 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 9999999999999999997544
No 409
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.74 E-value=0.015 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||||++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 39999999999999999987654
No 410
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.72 E-value=0.015 Score=47.32 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999998754
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.71 E-value=0.016 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999998654
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.71 E-value=0.015 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987643
No 413
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.71 E-value=0.014 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=22.0
Q ss_pred eEEecCCCCChhHHHHHHHhccCc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
|.|.|++|+||||+++.|+..+..
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 414
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.70 E-value=0.0076 Score=57.16 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhccC
Q 017575 46 LCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 46 ~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.+.+.+ ..+. +.|+|+||+|||||+++|++..+
T Consensus 148 ~~i~lel---k~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 148 RRLRLEL---MLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp EEEEEEE---CCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred eeeeeEE---cCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 3455555 4555 99999999999999999998854
No 415
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.67 E-value=0.024 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
..|. ++|.||||+|||+++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566 899999999999999998875
No 416
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.66 E-value=0.016 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 9999999999999999998754
No 417
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.65 E-value=0.017 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||||++.+.+..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999998653
No 418
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.64 E-value=0.017 Score=50.12 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.9
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHh
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~ 79 (369)
..|. ++|.|+||+|||+++..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4556 99999999999999977653
No 419
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.61 E-value=0.019 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=21.8
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
..|. +.|+|+||+|||||+++|++.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3444 999999999999999999984
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.60 E-value=0.017 Score=47.20 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999987643
No 421
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.59 E-value=0.017 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999987543
No 422
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.58 E-value=0.018 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|+++|++|+|||+|++.+.+.-
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 9999999999999999988543
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.018 Score=47.06 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 9999999999999999987654
No 424
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.57 E-value=0.017 Score=47.95 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|||||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 425
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.56 E-value=0.018 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.6
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++|+|++|+|||+|++.+..-
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999776654
No 426
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.56 E-value=0.018 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCe-eEEecCCCCChhHHHHHHHhccCc
Q 017575 57 IGG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 57 ~g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
.|. |.|.|++||||||+++.++..+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344 899999999999999999998864
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.55 E-value=0.016 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|.|.|++|+||||.++.++..+.
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998885
No 428
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.54 E-value=0.014 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred eEEecCCCCChhHHHHHHHhccCc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
++|.||+|+|||+++..|+..++.
T Consensus 5 i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEECcchhhHHHHHHHHHHHCCC
Confidence 789999999999999999988753
No 429
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.53 E-value=0.017 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 55 PKIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 55 ~~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+..|-.+|+||||+|||+++.+|+-.+
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 355559999999999999999998643
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.51 E-value=0.019 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999987653
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.50 E-value=0.019 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 9999999999999999988543
No 432
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.49 E-value=0.012 Score=48.26 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.5
Q ss_pred eEEecCCCCChhHHHHHHHh
Q 017575 60 VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~ 79 (369)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999988863
No 433
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.48 E-value=0.016 Score=52.63 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=21.8
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|.+.|+|.||+|||||++.+.+.-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34559999999999999999997653
No 434
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.45 E-value=0.022 Score=56.81 Aligned_cols=26 Identities=42% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
..+.+++.|||||||||++..+...+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 44559999999999999988776655
No 435
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.45 E-value=0.018 Score=51.30 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|+||||||||++.+++.-
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999998753
No 436
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.45 E-value=0.02 Score=47.00 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.2
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+-
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999988754
No 437
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.44 E-value=0.027 Score=56.47 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhccCCCCeeEEecCCCCChhHHHHHHHhcc
Q 017575 42 EEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 42 ~~~~~~l~~~l~~~~~g~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+....++...+ ..+..+|.||||||||+++..+...+
T Consensus 183 ~~Q~~av~~~l---~~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 183 HSQVYAVKTVL---QRPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp HHHHHHHHHHH---TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 33455555555 44558999999999999876665443
No 438
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.44 E-value=0.024 Score=51.88 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|.||||+|||+++..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3455 9999999999999999988654
No 439
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.44 E-value=0.018 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=23.0
Q ss_pred CCCeeEEecCCCCChhHHHHHHHhccC
Q 017575 56 KIGGVMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 56 ~~g~vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
..+|++++||+|+|||++++.+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 355699999999999999999987654
No 440
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.43 E-value=0.02 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+++.|++|+||||++-.++..+.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 99999999999999888877764
No 441
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.42 E-value=0.015 Score=48.76 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=19.2
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 999999999999999998654
No 442
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.41 E-value=0.019 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
+++++|++|+|||+|++.+.+.-
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999987543
No 443
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.02 Score=47.72 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999987654
No 444
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.40 E-value=0.021 Score=47.79 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++|+|++|+|||+|++.+.+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998753
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.02 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|++|+|||+|++.+.+.-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 9999999999999999987654
No 446
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.38 E-value=0.021 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987643
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.38 E-value=0.021 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999988643
No 448
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.38 E-value=0.016 Score=56.66 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+++|.||+||||+++.|+..+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998763
No 449
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.38 E-value=0.021 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|+++|++|+|||+|++.+.+.-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 9999999999999999987543
No 450
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.32 E-value=0.022 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.1
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+..--
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999887543
No 451
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.32 E-value=0.021 Score=46.74 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
+++++|++|+|||+|++.+..-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3999999999999999998743
No 452
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.32 E-value=0.022 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 9999999999999998887543
No 453
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.31 E-value=0.022 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999987654
No 454
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.022 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
.++++|++|+|||+|++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998764
No 455
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|++|+|||+|++.+.+.-
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 9999999999999999988654
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.29 E-value=0.023 Score=47.25 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999987643
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.28 E-value=0.023 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999997543
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.26 E-value=0.023 Score=47.08 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.3
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999998754
No 459
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.26 E-value=0.023 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=21.8
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|.|.|++||||||+++.|+..+.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999984
No 460
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.25 E-value=0.017 Score=55.01 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.4
Q ss_pred eEEecCCCCChhHHHHHHHhccCcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLPVI 84 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~~~ 84 (369)
++++||+|+||||++..|+..+...
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999888543
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.24 E-value=0.023 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+.+.-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 39999999999999999987653
No 462
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.24 E-value=0.023 Score=47.04 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999987654
No 463
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.24 E-value=0.023 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999987654
No 464
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.22 E-value=0.023 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987654
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.023 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=19.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|++|+|||+|++.+.+..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 9999999999999999887643
No 466
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.023 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.5
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 999999999999999999764
No 467
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.22 E-value=0.017 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
+++++|++|+|||+|++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999988764
No 468
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.21 E-value=0.023 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.4
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+.+.-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999998653
No 469
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.19 E-value=0.024 Score=51.69 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.3
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
..|. ++|.||||+|||+++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455 999999999999999988764
No 470
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.024 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
.++++|++|+|||+|++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999853
No 471
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.16 E-value=0.023 Score=48.41 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+||||++..++..+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 39999999999999999988765
No 472
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.14 E-value=0.023 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.6
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++|+|+||||||||++.+.+.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998764
No 473
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.11 E-value=0.022 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998653
No 474
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.09 E-value=0.026 Score=47.63 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.4
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
|+++|++|+|||+|++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998754
No 475
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.09 E-value=0.024 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=18.8
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999998754
No 476
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.09 E-value=0.025 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++|+|+||+|||||++.+.+.-
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 9999999999999999998754
No 477
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.07 E-value=0.026 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.3
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|+|+|.+|+|||||++.|.+.-
T Consensus 24 I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 9999999999999999998754
No 478
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.03 E-value=0.023 Score=47.33 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=18.8
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998754
No 479
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.99 E-value=0.02 Score=55.64 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=22.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
+.|+|.+||||||++++|+..+.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHT
T ss_pred EEecccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999985
No 480
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.96 E-value=0.028 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.3
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999987654
No 481
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.96 E-value=0.021 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987654
No 482
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.95 E-value=0.024 Score=47.34 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.0
Q ss_pred eeEEecCCCCChhHHHHHHHh
Q 017575 59 GVMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~ 79 (369)
.++++|++|+|||+|++.+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999998864
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.95 E-value=0.028 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 23 i~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999988754
No 484
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.93 E-value=0.026 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.8
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
.|+++|++|+|||+|++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3999999999999999998764
No 485
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.90 E-value=0.028 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.4
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++|+|++|+|||||+..++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 39999999999999998888664
No 486
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.89 E-value=0.025 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|+++|++|+|||+|++.+.+.-
T Consensus 20 i~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987644
No 487
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.029 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred eeEEecCCCCChhHHHHHHHhcc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~l 81 (369)
.++++|++|+|||+|++.+.+.-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999988643
No 488
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.87 E-value=0.028 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
+.|+|+||+|||||++.+.+..
T Consensus 183 vaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 9999999999999999998875
No 489
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.86 E-value=0.029 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.8
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
|+|+|++|+|||+|++.+.+.-
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999987643
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.86 E-value=0.018 Score=47.25 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=8.9
Q ss_pred eEEecCCCCChhHHHHHHHhc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~ 80 (369)
++++|++|+|||+|++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999888643
No 491
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.85 E-value=0.024 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.1
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|+++|.||+||||+++.++..+.
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.84 E-value=0.029 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.3
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
|.|.|+.||||||.++.|+..+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 88999999999999999998874
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.83 E-value=0.029 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.3
Q ss_pred eeEEecCCCCChhHHHHHHHhc
Q 017575 59 GVMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 59 ~vlL~Gp~G~GKTtla~~la~~ 80 (369)
.++++|++|+|||+|++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3999999999999999998753
No 494
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.83 E-value=0.068 Score=57.55 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCccccChHHHHHHhhhhhccCCCC-e-eEEecCCCCChhHHHHHHHhc
Q 017575 34 PFTAIVGQEEMKLCLLLNVIDPKIG-G-VMIMGDRGTGKSTTVRSLVDL 80 (369)
Q Consensus 34 ~~~~i~G~~~~~~~l~~~l~~~~~g-~-vlL~Gp~G~GKTtla~~la~~ 80 (369)
....++|++..++.+...+.....+ . +.|+|+.|+||||||+.++..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4566899998888777766422222 2 889999999999999888765
No 495
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.82 E-value=0.031 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 56 KIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 56 ~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
..|. ++|.||||+|||+|+..++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555 9999999999999998887654
No 496
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.82 E-value=0.025 Score=51.13 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.8
Q ss_pred Ce-eEEecCCCCChhHHHHHHHhccCc
Q 017575 58 GG-VMIMGDRGTGKSTTVRSLVDLLPV 83 (369)
Q Consensus 58 g~-vlL~Gp~G~GKTtla~~la~~l~~ 83 (369)
+. ++++|++|+||||++..++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44 889999999999999999988854
No 497
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.81 E-value=0.03 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.5
Q ss_pred eEEecCCCCChhHHHHHHHhccC
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLLP 82 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l~ 82 (369)
++++|++|+|||+|++.+.+...
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 99999999999999998877553
No 498
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.77 E-value=0.041 Score=50.59 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHhhhhhccCCCCe-eEEecCCCCChhHHHHHHHhcc
Q 017575 45 KLCLLLNVIDPKIGG-VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 45 ~~~l~~~l~~~~~g~-vlL~Gp~G~GKTtla~~la~~l 81 (369)
++.+.--+ ..|. ++|.|+||+|||+|+..++...
T Consensus 36 LD~~~gGl---~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 36 LDNYTSGF---NKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHCSB---CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCC---CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444445 6777 9999999999999999887765
No 499
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.77 E-value=0.039 Score=54.33 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=30.8
Q ss_pred cChHHHHHHhhhhhccCCC--Ce-eEEecCCCCChhHHHHHHHh
Q 017575 39 VGQEEMKLCLLLNVIDPKI--GG-VMIMGDRGTGKSTTVRSLVD 79 (369)
Q Consensus 39 ~G~~~~~~~l~~~l~~~~~--g~-vlL~Gp~G~GKTtla~~la~ 79 (369)
+|++..++.+.-.+..... .. +.|+|+.|+||||||+.++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5988877777655532211 23 89999999999999999995
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.74 E-value=0.032 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEecCCCCChhHHHHHHHhcc
Q 017575 60 VMIMGDRGTGKSTTVRSLVDLL 81 (369)
Q Consensus 60 vlL~Gp~G~GKTtla~~la~~l 81 (369)
++++|++|+|||+|++.+.+.-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 9999999999999999988654
Done!