BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017578
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 164/372 (44%), Gaps = 91/372 (24%)
Query: 27 CPPSERAALLAFKAALHEPYLGIFNSWT-GNDCCH-NWYGVSCDQ--ETHRVADINLRGE 82
C P ++ ALL K L P +SW DCC+ W GV CD +T+RV +++L G
Sbjct: 3 CNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 83 SEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLI 142
+ + IP ++++P+L L +
Sbjct: 61 NLPKPY------------------------------------PIPSSLANLPYLNFLYIG 84
Query: 143 G-NKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGS 201
G N L G IP I +L +L L I N+SGAIP ++ + +L+ LD
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS----------- 133
Query: 202 VGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLAT-LN 260
N +SGT+P SIS + L + N+ISG IP S G + L T +
Sbjct: 134 -------------YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 261 LDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLS------ 314
+ N+L+G IP + N ++ ++LSRNMLEG +FG I LA N L+
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 315 -----------------GSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAY 357
G++P+ L+ ++ L+ S N LCG IP G + S++A
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 358 NKCLCGKPLRAC 369
NKCLCG PL AC
Sbjct: 301 NKCLCGSPLPAC 312
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 137/319 (42%), Gaps = 70/319 (21%)
Query: 97 MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGR 156
+ G I + + L +L L D+ +TGEIP +S+ L + L N+L+G+IP+ IGR
Sbjct: 451 LEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP----------------- 199
L LA+L +++N+ SG IP + + SL+ LDL N +G IP
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 200 ----------------GSVGXXXXXXXXXXXXNQISGTIPSSI-SMIY------------ 230
G+ N++S P +I S +Y
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLE 290
+ LD+S N +SG IP +G M L LNL N +SG
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG---------------------- 667
Query: 291 GKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHL 350
IPD G +DL+ NKL G IP+ +SA + + +D S+N L G IP+ F+
Sbjct: 668 -SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 351 EASSFAYNKCLCGKPLRAC 369
+ F N LCG PL C
Sbjct: 727 PPAKFLNNPGLCGYPLPRC 745
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 125/265 (47%), Gaps = 31/265 (11%)
Query: 108 LTRLSSLTLADWKGITGEIPRCIS-SIPFLRILDLIGN---------------------- 144
L L L+LA+ K TGEIP +S + L LDL GN
Sbjct: 265 LKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 145 --KLSGDIPRD-IGRLHRLAVLNIADNNISGAIPPSIANLS-SLMHLDLRNNRISGPIPG 200
SG++P D + ++ L VL+++ N SG +P S+ NLS SL+ LDL +N SGPI
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 201 SV--GXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLAT 258
++ N +G IP ++S L L LS N +SG IP+SLG ++ L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 259 LNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSI 317
L L N L G IP LM + L L N L G+IP + I L+ N+L+G I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 318 PRTLSAASYIGHLDFSHNYLCGRIP 342
P+ + + L S+N G IP
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIP 528
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 131 SSIPFL------RILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPP----SIAN 180
+ IPFL + LD+ GNKLSGD R I L +LNI+ N G IPP S+
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 270
Query: 181 LS-------------------SLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGT 221
LS +L LDL N G +P G N SG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 222 IPSSISMIYR-LADLDLSMNQISGMIPASLGKM-AVLATLNLDFNKLSGPIPASLMN--- 276
+P + R L LDLS N+ SG +P SL + A L TL+L N SGPI +L
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 277 SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNY 336
+ + L L N GKIP S ++ L++N LSG+IP +L + S + L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 337 LCGRIP 342
L G IP
Sbjct: 451 LEGEIP 456
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 50/296 (16%)
Query: 97 MTGYISPAVCKLTR--LSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDI 154
+G I P +C+ + L L L + G TG+IP +S+ L L L N LSG IP +
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 155 GRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXX 214
G L +L L + N + G IP + + +L L L N ++G IP +
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 215 XNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL 274
N+++G IP I + LA L LS N SG IPA LG L L+L+ N +G IPA++
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 275 MNS---------------------------GISNL--------------------NLSRN 287
G NL N++
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 288 MLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343
+ G F +D++YN LSG IP+ + + Y+ L+ HN + G IPD
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 110/259 (42%), Gaps = 55/259 (21%)
Query: 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS 195
L+ L + GNK+SGD+ D+ R L L+++ NN S I P + + S+L HLD+ N++S
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLS 233
Query: 196 GPIPGSVGXXXXXXXXXXXXNQISGTIP----SSISMIY-------------------RL 232
G ++ NQ G IP S+ + L
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 233 ADLDLSMNQISGMIPASLG-------------------------KMAVLATLNLDFNKLS 267
LDLS N G +P G KM L L+L FN+ S
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 268 GPIPASLMN--SGISNLNLSRNMLEGKI-PDV-FGPRSYFTAIDLAYNKLSGSIPRTLSA 323
G +P SL N + + L+LS N G I P++ P++ + L N +G IP TLS
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 324 ASYIGHLDFSHNYLCGRIP 342
S + L S NYL G IP
Sbjct: 414 CSELVSLHLSFNYLSGTIP 432
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 140/338 (41%), Gaps = 41/338 (12%)
Query: 31 ERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQ- 89
E L++FK L P + W+ N + GV+C + +V I+L + + F
Sbjct: 10 EIHQLISFKDVL--PDKNLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGFSA 65
Query: 90 -----------------RAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISS 132
+H G ++G+ A LS +L+ + C S
Sbjct: 66 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SG 124
Query: 133 IPFLRI----LDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIA---NLSSLM 185
+ FL + LD G K+SG + +L+ L VL+++ N+ISGA L
Sbjct: 125 LKFLNVSSNTLDFPG-KVSGGL-----KLNSLEVLDLSANSISGANVVGWVLSDGCGELK 178
Query: 186 HLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGM 245
HL + N+ISG + V N S IP + L LD+S N++SG
Sbjct: 179 HLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 235
Query: 246 IPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVF-GPRSYFT 304
++ L LN+ N+ GPIP + S + L+L+ N G+IPD G T
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 305 AIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIP 342
+DL+ N G++P + S + L S N G +P
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 182 SSLMHLDLRNNRISGPIP--GSVGXXXXXXXXXXXXNQISGTIPSSIS---MIYRLADLD 236
+SL LDL N +SGP+ S+G N + P +S + L LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 237 LSMNQISG------MIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLE 290
LS N ISG ++ G++ LA + NK+SG + S + L++S N
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRC-VNLEFLDVSSNNFS 210
Query: 291 GKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHL 350
IP G S +D++ NKLSG R +S + + L+ S N G IP P L
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSL 268
Query: 351 EASSFAYNK 359
+ S A NK
Sbjct: 269 QYLSLAENK 277
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 137/319 (42%), Gaps = 70/319 (21%)
Query: 97 MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGR 156
+ G I + + L +L L D+ +TGEIP +S+ L + L N+L+G+IP+ IGR
Sbjct: 454 LEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP----------------- 199
L LA+L +++N+ SG IP + + SL+ LDL N +G IP
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 200 ----------------GSVGXXXXXXXXXXXXNQISGTIPSSI-SMIY------------ 230
G+ N++S P +I S +Y
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLE 290
+ LD+S N +SG IP +G M L LNL N +SG
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG---------------------- 670
Query: 291 GKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHL 350
IPD G +DL+ NKL G IP+ +SA + + +D S+N L G IP+ F+
Sbjct: 671 -SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 351 EASSFAYNKCLCGKPLRAC 369
+ F N LCG PL C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 125/265 (47%), Gaps = 31/265 (11%)
Query: 108 LTRLSSLTLADWKGITGEIPRCIS-SIPFLRILDLIGN---------------------- 144
L L L+LA+ K TGEIP +S + L LDL GN
Sbjct: 268 LKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 145 --KLSGDIPRD-IGRLHRLAVLNIADNNISGAIPPSIANLS-SLMHLDLRNNRISGPIPG 200
SG++P D + ++ L VL+++ N SG +P S+ NLS SL+ LDL +N SGPI
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 201 SV--GXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLAT 258
++ N +G IP ++S L L LS N +SG IP+SLG ++ L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 259 LNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSI 317
L L N L G IP LM + L L N L G+IP + I L+ N+L+G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 318 PRTLSAASYIGHLDFSHNYLCGRIP 342
P+ + + L S+N G IP
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIP 531
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 131 SSIPFL------RILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPP----SIAN 180
+ IPFL + LD+ GNKLSGD R I L +LNI+ N G IPP S+
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273
Query: 181 LS-------------------SLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGT 221
LS +L LDL N G +P G N SG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 222 IPSSISMIYR-LADLDLSMNQISGMIPASLGKM-AVLATLNLDFNKLSGPIPASLMN--- 276
+P + R L LDLS N+ SG +P SL + A L TL+L N SGPI +L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 277 SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNY 336
+ + L L N GKIP S ++ L++N LSG+IP +L + S + L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 337 LCGRIP 342
L G IP
Sbjct: 454 LEGEIP 459
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 50/296 (16%)
Query: 97 MTGYISPAVCKLTR--LSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDI 154
+G I P +C+ + L L L + G TG+IP +S+ L L L N LSG IP +
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 155 GRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXX 214
G L +L L + N + G IP + + +L L L N ++G IP +
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 215 XNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL 274
N+++G IP I + LA L LS N SG IPA LG L L+L+ N +G IPA++
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 275 MNS---------------------------GISNL--------------------NLSRN 287
G NL N++
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 288 MLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343
+ G F +D++YN LSG IP+ + + Y+ L+ HN + G IPD
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 110/259 (42%), Gaps = 55/259 (21%)
Query: 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS 195
L+ L + GNK+SGD+ D+ R L L+++ NN S I P + + S+L HLD+ N++S
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLS 236
Query: 196 GPIPGSVGXXXXXXXXXXXXNQISGTIP----SSISMIY-------------------RL 232
G ++ NQ G IP S+ + L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 ADLDLSMNQISGMIPASLG-------------------------KMAVLATLNLDFNKLS 267
LDLS N G +P G KM L L+L FN+ S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 268 GPIPASLMN--SGISNLNLSRNMLEGKI-PDV-FGPRSYFTAIDLAYNKLSGSIPRTLSA 323
G +P SL N + + L+LS N G I P++ P++ + L N +G IP TLS
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 324 ASYIGHLDFSHNYLCGRIP 342
S + L S NYL G IP
Sbjct: 417 CSELVSLHLSFNYLSGTIP 435
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 140/338 (41%), Gaps = 41/338 (12%)
Query: 31 ERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQ- 89
E L++FK L P + W+ N + GV+C + +V I+L + + F
Sbjct: 13 EIHQLISFKDVL--PDKNLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGFSA 68
Query: 90 -----------------RAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISS 132
+H G ++G+ A LS +L+ + C S
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SG 127
Query: 133 IPFLRI----LDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIA---NLSSLM 185
+ FL + LD G K+SG + +L+ L VL+++ N+ISGA L
Sbjct: 128 LKFLNVSSNTLDFPG-KVSGGL-----KLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 186 HLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGM 245
HL + N+ISG + V N S IP + L LD+S N++SG
Sbjct: 182 HLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 238
Query: 246 IPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVF-GPRSYFT 304
++ L LN+ N+ GPIP + S + L+L+ N G+IPD G T
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 305 AIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIP 342
+DL+ N G++P + S + L S N G +P
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 182 SSLMHLDLRNNRISGPIP--GSVGXXXXXXXXXXXXNQISGTIPSSIS---MIYRLADLD 236
+SL LDL N +SGP+ S+G N + P +S + L LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 237 LSMNQISG------MIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLE 290
LS N ISG ++ G++ LA + NK+SG + S + L++S N
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRC-VNLEFLDVSSNNFS 213
Query: 291 GKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHL 350
IP G S +D++ NKLSG R +S + + L+ S N G IP P L
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSL 271
Query: 351 EASSFAYNK 359
+ S A NK
Sbjct: 272 QYLSLAENK 280
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 10/216 (4%)
Query: 108 LTRLSSLTLAD--WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNI 165
TR S L + D + I+ P +P L++L+L N+LS + L L++
Sbjct: 45 FTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDL 104
Query: 166 ADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSS 225
N+I N +L+ LDL +N +S G+ N+I
Sbjct: 105 MSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEE 164
Query: 226 ISMI--YRLADLDLSMNQISGMIP---ASLGKMAVLATLNLDFN-KLSGPIPASLMNSGI 279
+ + L LDLS N + P ++GK+ L N N L+ + L N+ I
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSI 224
Query: 280 SNLNLSRNMLEGKIPDVFGPRSY--FTAIDLAYNKL 313
NL+L+ N L F + T +DL+YN L
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275
NQ+ P++ + +LA LD N IS + P + +L LNL N+LS + +
Sbjct: 35 NQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFV 94
Query: 276 N-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316
+ ++ L+L N + + F + +DL++N LS +
Sbjct: 95 FCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 11/209 (5%)
Query: 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXX----XXXX 212
L L LN+ DNNI + L SL +L L S +
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 213 XXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK-MAVLATLNLDFNK-LSGPI 270
N IS + S + +L LDL +N+I + + + + + L +NK L
Sbjct: 388 LTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLST 447
Query: 271 PASLMNSGISNLNLSRNMLEGK--IPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIG 328
+ + + L L R L+ P F P T +DL+ N ++ L +
Sbjct: 448 SSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLE 507
Query: 329 HLDFSHNYLC---GRIPDGSPFDHLEASS 354
LDF HN L R G P + L+ S
Sbjct: 508 ILDFQHNNLARLWKRANPGGPVNFLKGLS 536
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS 195
+ +L+L N+L P + R +LA+L+ N+IS P L L L+L++N +S
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 196 GPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISG 244
+ N I + L LDLS N +S
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 10/217 (4%)
Query: 108 LTRLSSLTLAD--WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNI 165
TR S LT D + I+ P +P L++L+L N+LS + L L++
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 166 ADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSS 225
N+I +L+ LDL +N +S G+ N+I
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 226 ISMIYR--LADLDLSMNQISGMIPA---SLGKMAVLATLNLDFN-KLSGPIPASLMNSGI 279
+ + L L+LS NQI P ++G++ L N+ L+ + L N+ I
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 280 SNLNLSRNMLEGKIPDVFGPRSY--FTAIDLAYNKLS 314
NL+LS + L F + T +DL+YN L+
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL- 274
NQ+ ++ + +L LD+ N IS + P K+ +L LNL N+LS +
Sbjct: 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94
Query: 275 MNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316
+ ++ L+L N ++ + F + +DL++N LS +
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 246 IPASLGK-MAVLATLNLDFNKLSGPIPASLMNSGIS--NLNLSRNMLEGKIPDVFGPR-S 301
IP + K + L ++L N L +PAS+ N+ +S +LNL +N++ VFGP
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609
Query: 302 YFTAIDLAYNKLSGSIPRTLSAASYIGHL-----DFSHNYLCGRIP--DGSPFDHLEASS 354
T +D+ +N + ++I + S +YLC P G P + SS
Sbjct: 610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN 276
Q+ +P++I++ L+L+ NQ+ + A+ + + L +L++ FN +S P
Sbjct: 18 QVPDDLPTNITV------LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 277 -SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335
+ LNL N L F + T + L N + + LD SHN
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 149 DIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXX 208
D+P +I VLN+ N + + S L LD+ N IS P
Sbjct: 22 DLPTNI------TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 209 XXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG 268
N++S + + L +L L N I + K L TL+L N LS
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 10/217 (4%)
Query: 108 LTRLSSLTLAD--WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNI 165
TR S LT D + I+ P +P L++L+L N+LS + L L++
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 166 ADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSS 225
N+I +L+ LDL +N +S G+ N+I
Sbjct: 115 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 174
Query: 226 ISMIYR--LADLDLSMNQISGMIPA---SLGKMAVLATLNLDFN-KLSGPIPASLMNSGI 279
+ + L L+LS NQI P ++G++ L N+ L+ + L N+ I
Sbjct: 175 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 234
Query: 280 SNLNLSRNMLEGKIPDVFGPRSY--FTAIDLAYNKLS 314
NL+LS + L F + T +DL+YN L+
Sbjct: 235 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 271
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL- 274
NQ+ ++ + +L LD+ N IS + P K+ +L LNL N+LS +
Sbjct: 45 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 104
Query: 275 MNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316
+ ++ L+L N ++ + F + +DL++N LS +
Sbjct: 105 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 246 IPASLGK-MAVLATLNLDFNKLSGPIPASLMNSGIS--NLNLSRNMLEGKIPDVFGPR-S 301
IP + K + L ++L N L +PAS+ N+ +S +LNL +N++ VFGP
Sbjct: 561 IPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 619
Query: 302 YFTAIDLAYNKLSGSIPRTLSAASYIGHL-----DFSHNYLCGRIP--DGSPFDHLEASS 354
T +D+ +N + ++I + S +YLC P G P + SS
Sbjct: 620 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 679
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN 276
Q+ +P++I++ L+L+ NQ+ + A+ + + L +L++ FN +S P
Sbjct: 28 QVPDDLPTNITV------LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 277 -SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335
+ LNL N L F + T + L N + + LD SHN
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 149 DIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXX 208
D+P +I VLN+ N + + S L LD+ N IS P
Sbjct: 32 DLPTNI------TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 85
Query: 209 XXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG 268
N++S + + L +L L N I + K L TL+L N LS
Sbjct: 86 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 10/217 (4%)
Query: 108 LTRLSSLTLAD--WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNI 165
TR S LT D + I+ P +P L++L+L N+LS + L L++
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 166 ADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSS 225
N+I +L+ LDL +N +S G+ N+I
Sbjct: 110 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 169
Query: 226 ISMIYR--LADLDLSMNQISGMIPA---SLGKMAVLATLNLDFN-KLSGPIPASLMNSGI 279
+ + L L+LS NQI P ++G++ L N+ L+ + L N+ I
Sbjct: 170 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 229
Query: 280 SNLNLSRNMLEGKIPDVFGPRSY--FTAIDLAYNKLS 314
NL+LS + L F + T +DL+YN L+
Sbjct: 230 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 266
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL- 274
NQ+ ++ + +L LD+ N IS + P K+ +L LNL N+LS +
Sbjct: 40 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 99
Query: 275 MNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316
+ ++ L+L N ++ + F + +DL++N LS +
Sbjct: 100 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 246 IPASLGK-MAVLATLNLDFNKLSGPIPASLMNSGIS--NLNLSRNMLEGKIPDVFGPR-S 301
IP + K + L ++L N L +PAS+ N+ +S +LNL +N++ VFGP
Sbjct: 556 IPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 614
Query: 302 YFTAIDLAYNKLSGSIPRTLSAASYIGHL-----DFSHNYLCGRIP--DGSPFDHLEASS 354
T +D+ +N + ++I + S +YLC P G P + SS
Sbjct: 615 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 674
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN 276
Q+ +P++I++ L+L+ NQ+ + A+ + + L +L++ FN +S P
Sbjct: 23 QVPDDLPTNITV------LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 277 -SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335
+ LNL N L F + T + L N + + LD SHN
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 149 DIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXX 208
D+P +I VLN+ N + + S L LD+ N IS P
Sbjct: 27 DLPTNI------TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 209 XXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG 268
N++S + + L +L L N I + K L TL+L N LS
Sbjct: 81 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN 169
LSS T++D ++G ++S+ L GN+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG-----LTSLQQLNF----GNQVTDLKP--LANLTTLERLDISSNK 183
Query: 170 ISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQIS--GTIPSSI 226
+S ++ + NL SL+ NN+IS P +G NQ+ GT+ S
Sbjct: 184 VSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 236
Query: 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR 286
+ L DLDL+ NQIS + P L + L L L N++S P + + + ++NL L+
Sbjct: 237 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNE 291
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSP 346
N LE P T + L +N +S P +S+ + + L FS+N ++ D S
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNN----KVSDVSS 343
Query: 347 FDHL 350
+L
Sbjct: 344 LANL 347
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 40/248 (16%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 48 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P +ANL++L L L NN+I+ P + N IS S++S + L
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG-PIPASLMN-----------SGISN 281
L+ NQ++ + P L + L L++ NK+S + A L N S I+
Sbjct: 155 QLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 211
Query: 282 LNLSRNMLE-----GKIPDV--FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
L + N+ E ++ D+ + T +DLA N++S P LS + + L
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 335 NYLCGRIP 342
N + P
Sbjct: 270 NQISNISP 277
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 222 IPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL--MNSGI 279
+ +S+ +L L+ NQ+ G +PA G LA+LNL +N+++ IPA+ +
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379
Query: 280 SNLNLSRNMLEGKIPDVFGPR--SYFTAIDLAYNKLSGSI 317
NL+ + N L+ IP++F + S +AID +YN++ GS+
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSV 417
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 246 IPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVF-GPRSYFT 304
+ SL K L L +N+L G +PA +++LNL+ N + +IP F G
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVE 380
Query: 305 AIDLAYNKLSGSIPRTLSA--ASYIGHLDFSHNYLCGRIPDGSPFDHLEASSF 355
+ A+NKL IP A S +DFS+N + G + DG FD L+ + F
Sbjct: 381 NLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSV-DGKNFDPLDPTPF 430
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 26/214 (12%)
Query: 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS-LMHLDLRNNRI 194
L L+ + N+L G +P G +LA LN+A N I+ IP + + + +L +N++
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Query: 195 SGPIPG-----SVGXXXXXXXXXXXXNQISGT-----IPSSISMIYRLADLDLSMNQISG 244
IP SV + G P+ I ++ ++LS NQIS
Sbjct: 390 KY-IPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISK 447
Query: 245 MIPASLGKMAVLATLNLDFNKLSGPIPASLMNSG--------ISNLNLSRNMLEGKIPDV 296
+ L+++NL N L+ SL + +++++L N L K+ D
Sbjct: 448 FPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506
Query: 297 FGPRS--YFTAIDLAYNKLSGSIPRTLSAASYIG 328
F + Y IDL+YN S + L++++ G
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN 169
LSS T++D ++G + L+ L N+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 170 ISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQIS--GTIPSSI 226
+S ++ + NL SL+ NN+IS P +G NQ+ GT+ S
Sbjct: 185 VSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 237
Query: 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR 286
+ L DLDL+ NQIS + P L + L L L N++S P + + + ++NL L+
Sbjct: 238 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNE 292
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSP 346
N LE P T + L +N +S P +S+ + + L FS+N ++ D S
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNN----KVSDVSS 344
Query: 347 FDHL 350
+L
Sbjct: 345 LANL 348
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 39/248 (15%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 48 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P +ANL++L L L NN+I+ P + N IS S++S + L
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG-PIPASLMN-----------SGISN 281
L S NQ++ + P L + L L++ NK+S + A L N S I+
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 282 LNLSRNMLE-----GKIPDV--FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
L + N+ E ++ D+ + T +DLA N++S P LS + + L
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 335 NYLCGRIP 342
N + P
Sbjct: 271 NQISNISP 278
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 41/270 (15%)
Query: 101 ISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRL 160
I+P + LT L+ LTL + IT P + ++ L L+L N +S DI + L L
Sbjct: 100 ITP-LANLTNLTGLTLFN-NQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LSGLTSL 153
Query: 161 AVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISG 220
LN + N ++ P +ANL++L LD+ +N++S + NQIS
Sbjct: 154 QQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 209
Query: 221 TIP--------------------SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLN 260
P +++ + L DLDL+ NQIS + P L + L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 261 LDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRT 320
L N++S P + + + ++NL L+ N LE P T + L +N +S P
Sbjct: 268 LGANQISNISPLAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 322
Query: 321 LSAASYIGHLDFSHNYLCGRIPDGSPFDHL 350
+S+ + + L F +N ++ D S +L
Sbjct: 323 VSSLTKLQRLFFYNN----KVSDVSSLANL 348
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 39/248 (15%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 48 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P +ANL++L L L NN+I+ P + N IS S++S + L
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG-PIPASLMN-----------SGISN 281
L+ S NQ++ + P L + L L++ NK+S + A L N S I+
Sbjct: 155 QLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 282 LNLSRNMLE-----GKIPDV--FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
L + N+ E ++ D+ + T +DLA N++S P LS + + L
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 335 NYLCGRIP 342
N + P
Sbjct: 271 NQISNISP 278
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN 169
LSS T++D ++G ++S+ L GN+++ P + L L L+I+ N
Sbjct: 139 ELSSNTISDISALSG-----LTSLQQLSF----GNQVTDLKP--LANLTTLERLDISSNK 187
Query: 170 ISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQIS--GTIPSSI 226
+S ++ + NL SL+ NN+IS P +G NQ+ GT+ S
Sbjct: 188 VSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 240
Query: 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR 286
+ L DLDL+ NQIS + P L + L L L N++S P + + + ++NL L+
Sbjct: 241 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNE 295
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSP 346
N LE P T + L +N +S P +S+ + + L F++N ++ D S
Sbjct: 296 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN----KVSDVSS 347
Query: 347 FDHL 350
+L
Sbjct: 348 LANL 351
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 52 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 104
Query: 174 IPPSIANLSSLMHLDLRNNRIS--GPIPG-----------------SVGXXXXXXXXXXX 214
P +ANL++L L L NN+I+ P+ S
Sbjct: 105 TP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 162
Query: 215 XNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL 274
NQ++ P ++ + L LD+S N++S + + L K+ L +L N++S P +
Sbjct: 163 GNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 218
Query: 275 MNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
+ + + L+L+ N L K + T +DLA N++S P LS + + L
Sbjct: 219 L-TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 273
Query: 335 NYLCGRIP 342
N + P
Sbjct: 274 NQISNISP 281
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN 169
LSS T++D ++G ++S+ L GN+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG-----LTSLQQLNF----GNQVTDLKP--LANLTTLERLDISSNK 183
Query: 170 ISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQIS--GTIPSSI 226
+S ++ + NL SL+ NN+IS P +G NQ+ GT+ S
Sbjct: 184 VSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 236
Query: 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR 286
+ L DLDL+ NQIS + P L + L L L N++S P + + + ++NL L+
Sbjct: 237 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNE 291
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSP 346
N LE P T + L +N +S P +S+ + + L F +N ++ D S
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN----KVSDVSS 343
Query: 347 FDHL 350
+L
Sbjct: 344 LANL 347
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 40/248 (16%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 48 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P +ANL++L L L NN+I+ P + N IS S++S + L
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG-PIPASLMN-----------SGISN 281
L+ NQ++ + P L + L L++ NK+S + A L N S I+
Sbjct: 155 QLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 211
Query: 282 LNLSRNMLE-----GKIPDV--FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
L + N+ E ++ D+ + T +DLA N++S P LS + + L
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 335 NYLCGRIP 342
N + P
Sbjct: 270 NQISNISP 277
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN 169
LSS T++D ++G ++S+ L GN+++ P + L L L+I+ N
Sbjct: 140 ELSSNTISDISALSG-----LTSLQQLSF----GNQVTDLKP--LANLTTLERLDISSNK 188
Query: 170 ISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQIS--GTIPSSI 226
+S ++ + NL SL+ NN+IS P +G NQ+ GT+ S
Sbjct: 189 VSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 241
Query: 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR 286
+ L DLDL+ NQIS + P L + L L L N++S P + + + ++NL L+
Sbjct: 242 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNE 296
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSP 346
N LE P T + L +N +S P +S+ + + L F +N ++ D S
Sbjct: 297 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN----KVSDVSS 348
Query: 347 FDHL 350
+L
Sbjct: 349 LANL 352
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 53 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 105
Query: 174 IPPSIANLSSLMHLDLRNNRIS--GPIPG-----------------SVGXXXXXXXXXXX 214
P +ANL++L L L NN+I+ P+ S
Sbjct: 106 TP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163
Query: 215 XNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASL 274
NQ++ P ++ + L LD+S N++S + + L K+ L +L N++S P +
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 219
Query: 275 MNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
+ + + L+L+ N L K + T +DLA N++S P LS + + L
Sbjct: 220 L-TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 335 NYLCGRIP 342
N + P
Sbjct: 275 NQISNISP 282
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 33/244 (13%)
Query: 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN 169
LSS T++D ++G + L+ L N+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 170 ISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQIS--GTIPSSI 226
+S ++ + NL SL+ NN+IS P +G NQ+ GT+ S
Sbjct: 185 VSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 237
Query: 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR 286
+ L DLDL+ NQIS + P L + L L L N++S P + + + ++NL L+
Sbjct: 238 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNE 292
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSP 346
N LE P T + L +N +S P +S+ + + L F +N ++ D S
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN----KVSDVSS 344
Query: 347 FDHL 350
+L
Sbjct: 345 LANL 348
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 39/248 (15%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIG---NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
AD GI + I + +L L I N+L+ P + L +L + + +N I+
Sbjct: 48 ADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P +ANL++L L L NN+I+ P + N IS S++S + L
Sbjct: 101 TP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG-PIPASLMN-----------SGISN 281
L S NQ++ + P L + L L++ NK+S + A L N S I+
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 282 LNLSRNMLE-----GKIPDV--FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334
L + N+ E ++ D+ + T +DLA N++S P LS + + L
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 335 NYLCGRIP 342
N + P
Sbjct: 271 NQISNISP 278
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 24/253 (9%)
Query: 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS 195
++ LDL GN LS D+ +L +LN++ N + + + +LS+L LDL NN +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 196 GPIPG----------------SVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSM 239
+ G S N+I+ R+ LDL +
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 240 NQISGMIPASLGKMA-VLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFG 298
N+I + A L + L LNL +N + + ++ + + L+LS N L P+ F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPE-FQ 211
Query: 299 PRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN-YLCGRIPD-GSPFDHLEASSFA 356
+ T I L NKL I + L + + H D N + CG + D S ++ +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Query: 357 YNKCLCGKPLRAC 369
K L G+ C
Sbjct: 271 TVKKLTGQNEEEC 283
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 122 ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANL 181
+TG + RC+ P +++LDL N++ IP+D+ L L LN+A N + L
Sbjct: 440 LTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 182 SSLMHLDLRNNRISGPIPG 200
+SL ++ L +N PG
Sbjct: 497 TSLQYIWLHDNPWDCTCPG 515
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 127 PRCISSIPFLRILDLIGNKLSGDIPRDIGRLH---RLAVLNIADNNISGAIPPSIANLSS 183
P ++P L +L L N LS +PR G H +L L++++NN+ + +S
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 184 LMHLDLRNNRIS----GPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSM 239
L +L L +NR++ IP +S + S++++ + +LD S
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSLFHA------------NVSYNLLSTLAIPIAVEELDASH 214
Query: 240 NQISGMI-PASLGKMAVLATLNLDFNKLSGPIPASLMNS-GISNLNLSRNMLEGKIPDVF 297
N I+ + P ++ L L L N L+ A L+N G+ ++LS N LE + F
Sbjct: 215 NSINVVRGPVNVE----LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 298 GPRSYFTAIDLAYNKLSG------SIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLE 351
+ ++ N+L IP TL LD SHN+L + FD LE
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIP-TLKV------LDLSHNHLLHVERNQPQFDRLE 321
Query: 352 ASSFAYNKCLCGK 364
+N + K
Sbjct: 322 NLYLDHNSIVTLK 334
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG-PIPASL 274
N++S + + +L L L+ N++ + ++ L TL + NKL PI
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 275 MNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPR-TLSAASYIGHLDFS 333
++ L L RN L+ P VF + T + L YN+L S+P+ + + L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 334 HNYLCGRIPDGSPFDHL 350
+N L R+P+G+ FD L
Sbjct: 166 NNQL-KRVPEGA-FDKL 180
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 8/186 (4%)
Query: 131 SSIPF-LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSI-ANLSSLMHLD 188
S+IP + LDL NKLS + RL +L +L + DN + +P I L +L L
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91
Query: 189 LRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPA 248
+ +N++ G NQ+ P + +L L L N++ +
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 249 SLGKMAVLATLNLDFNKLSGPIPASLMN--SGISNLNLSRNMLEGKIPD-VFGPRSYFTA 305
K+ L L L N+L +P + + + L L N L+ ++P+ F
Sbjct: 152 VFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209
Query: 306 IDLAYN 311
+ L N
Sbjct: 210 LQLQEN 215
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS 195
++ LDL GN LS D+ +L +LN++ N + + + +LS+L LDL NN +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 196 GPIPG-SVGXXXXXXXXXXXXNQISGT-------IPSSISMIY--------RLADLDLSM 239
+ G S+ + G + I+M+ R+ LDL +
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 240 NQISGMIPASLGKMA-VLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFG 298
N+I + A L + L LNL +N + + ++ + + L+LS N L P+ F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPE-FQ 211
Query: 299 PRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN-YLCGRIPD-GSPFDHLEASSFA 356
+ T I L NKL I + L + + H D N + CG + D S ++ +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Query: 357 YNKCLCGKPLRAC 369
K L G+ C
Sbjct: 271 TVKKLTGQNEEEC 283
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 127 PRCISSIPFLRILDLIGNKLSGDIPRDIGRLH---RLAVLNIADNNISGAIPPSIANLSS 183
P ++P L +L L N LS +PR G H +L L++++NN+ + +S
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 184 LMHLDLRNNRIS----GPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSM 239
L +L L +NR++ IP +S + S++++ + +LD S
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHAN------------VSYNLLSTLAIPIAVEELDASH 220
Query: 240 NQISGMI-PASLGKMAVLATLNLDFNKLSGPIPASLMNS-GISNLNLSRNMLEGKIPDVF 297
N I+ + P ++ L L L N L+ A L+N G+ ++LS N LE + F
Sbjct: 221 NSINVVRGPVNVE----LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 298 GPRSYFTAIDLAYNKLSG------SIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLE 351
+ ++ N+L IP TL LD SHN+L + FD LE
Sbjct: 275 VKMQRLERLYISNNRLVALNLYGQPIP-TLKV------LDLSHNHLLHVERNQPQFDRLE 327
Query: 352 ASSFAYNKCLCGK 364
+N + K
Sbjct: 328 NLYLDHNSIVTLK 340
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 224 SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN--SGISN 281
S++ + L L L+ NQ+ + K+ L L L N+L +P + + + ++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 282 LNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRI 341
LNL+ N L+ VF + T +DL+YN+L + + L N L +
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSV 196
Query: 342 PDGSPFDHLEASSFAY 357
PDG FD L + + +
Sbjct: 197 PDGV-FDRLTSLQYIW 211
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 13/154 (8%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLN--IADNNISGAI 174
+D K + G I +P +R L L GNKL DI L L L I N ++
Sbjct: 51 SDIKSVQG-----IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQSL 100
Query: 175 PPSIAN-LSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P + + L++L L L N++ G NQ+ + L
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS 267
+LDLS NQ+ + K+ L L L N+L
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 29/142 (20%)
Query: 125 EIPRCISSIPFLRILDLIGNKLSGDIPRD--IGRLHRLAVLNIADNNISGAIPPSIANLS 182
EIPR IP L+ + G I D GRL L L + N ++G P + S
Sbjct: 22 EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 183 SLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQI 242
+ L L N+I +IS + +++L L+L NQI
Sbjct: 79 HIQELQLGENKIK---------------------EISNKM---FLGLHQLKTLNLYDNQI 114
Query: 243 SGMIPASLGKMAVLATLNLDFN 264
S ++P S + L +LNL N
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASN 136
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 122 ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANL 181
+TG P ++ L L NK+ + LH+L LN+ DN IS +P S +L
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 182 SSLMHLDLRNN 192
+SL L+L +N
Sbjct: 126 NSLTSLNLASN 136
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275
NQ++G P++ + +L L N+I + + L TLNL N++S +P S
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 276 N-SGISNLNLSRN 287
+ + +++LNL+ N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 232 LADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLE 290
L L+L NQ++G+ P + + + L L NK+ + + LNL N +
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 291 GKIPDVFGPRSYFTAIDLAYN 311
+P F + T+++LA N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 122 ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIAN- 180
+T I RC+ P +++LDL NK+ IP+ + +L L LN+A N + ++P I +
Sbjct: 411 LTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQL-KSVPDGIFDR 466
Query: 181 LSSLMHLDLRNN 192
L+SL + L N
Sbjct: 467 LTSLQKIWLHTN 478
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 150 IPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXX 209
+P+D+ + + +LNI+ N IS I +LS L L + +NRI
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 210 XXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGM-IPASLGKMAVLATLNLDFNKL-- 266
N++ + S L LDLS N + I G M+ L L L L
Sbjct: 73 YLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 267 SGPIPASLMNSGISNLNLSRNML 289
S +P I++LN+S+ +L
Sbjct: 130 SSVLP-------IAHLNISKVLL 145
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 113/288 (39%), Gaps = 33/288 (11%)
Query: 70 ETHRVADINLRGESEDPIFQRA------------HRTGYMTGYISPAV----CKLTRLSS 113
E HR+ R E F ++ R Y+ Y+ + C LT +SS
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSS 286
Query: 114 LTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
+L +T E + S + L+L+ K G P +L L L N G
Sbjct: 287 FSLV---SVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSN--KGG 338
Query: 174 IPPSIANLSSLMHLDLRNNRIS--GPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYR 231
S +L SL LDL N +S G S N + T+ S+ + +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397
Query: 232 LADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR----N 287
L LD + + M S+ +++ + LD + + + + +G+S+L + + +
Sbjct: 398 LEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 288 MLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335
E +PD+F T +DL+ +L P ++ S + L+ SHN
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 17/254 (6%)
Query: 88 FQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLS 147
F+ A+ Y+ G I C LT +SS +L +T E + S + L+L+ K
Sbjct: 286 FRLAYLDYYLDGIIDLFNC-LTNVSSFSLV---SVTIERVKDFSYNFGWQHLELVNCKF- 340
Query: 148 GDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS--GPIPGSVGXX 205
G P +L L L N G S +L SL LDL N +S G S
Sbjct: 341 GQFP--TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396
Query: 206 XXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNK 265
N + T+ S+ + +L LD + + M S+ +++ + LD +
Sbjct: 397 ISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISH 454
Query: 266 LSGPIPASLMNSGISNLNLSR----NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTL 321
+ + + +G+S+L + + + E +PD+F T +DL+ +L P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 322 SAASYIGHLDFSHN 335
++ S + L+ SHN
Sbjct: 515 NSLSSLQVLNMSHN 528
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 35/305 (11%)
Query: 70 ETHRVADINLRGESEDPIFQRA------------HRTGYMTGYISPAV----CKLTRLSS 113
E HR+ R E F ++ R Y+ Y+ + C LT +SS
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSS 286
Query: 114 LTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGA 173
+L +T E + S + L+L+ K G P +L L L N G
Sbjct: 287 FSLV---SVTIERVKDFSYNFGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSN--KGG 338
Query: 174 IPPSIANLSSLMHLDLRNNRIS--GPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYR 231
S +L SL LDL N +S G S N + T+ S+ + +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397
Query: 232 LADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR----N 287
L LD + + M S+ +++ + LD + + + + +G+S+L + + +
Sbjct: 398 LEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 288 MLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPF 347
E +PD+F T +DL+ +L P ++ S + L+ + N L +PDG F
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDG-IF 514
Query: 348 DHLEA 352
D L +
Sbjct: 515 DRLTS 519
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191
S P L++LDL ++ L L+ L + N I + + LSSL L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 192 NRISGPIPGSVGXXXXXXXXXXXXNQI-SGTIPSSISMIYRLADLDLSMNQISGMIPASL 250
++ +G N I S +P S + L LDLS N+I + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 251 GKMAVLATLNLDFNKLSGPI----PASLMNSGISNLNLSRNMLEGKIPD-VFGPRSYFTA 305
+ + LNL + P+ P + + L L N L+ +PD +F +
Sbjct: 171 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQK 229
Query: 306 IDLAYNKLSGSIPR 319
I L N S PR
Sbjct: 230 IWLHTNPWDCSCPR 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191
S P L++LDL ++ L L+ L + N I + + LSSL L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 192 NRISGPIPGSVGXXXXXXXXXXXXNQI-SGTIPSSISMIYRLADLDLSMNQISGMIPASL 250
++ +G N I S +P S + L LDLS N+I + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 251 GKMAVLATLNLDFNKLSGPI----PASLMNSGISNLNLSRNMLEGKIPD-VFGPRSYFTA 305
+ + LNL + P+ P + + L L N L+ +PD +F +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQK 228
Query: 306 IDLAYNKLSGSIPR 319
I L N S PR
Sbjct: 229 IWLHTNPWDCSCPR 242
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191
S P L++LDL ++ L L+ L + N I + + LSSL L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 192 NRISGPIPGSVGXXXXXXXXXXXXNQI-SGTIPSSISMIYRLADLDLSMNQISGMIPASL 250
++ +G N I S +P S + L LDLS N+I + L
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Query: 251 GKMAVLATLNLDFNKLSGPI----PASLMNSGISNLNLSRNMLEGKIPD-VFGPRSYFTA 305
+ + LNL + P+ P + + L L N L+ +PD +F +
Sbjct: 172 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQK 230
Query: 306 IDLAYNKLSGSIPR 319
I L N S PR
Sbjct: 231 IWLHTNPWDCSCPR 244
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191
S P L++LDL ++ L L+ L + N I + + LSSL L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 192 NRISGPIPGSVGXXXXXXXXXXXXNQI-SGTIPSSISMIYRLADLDLSMNQISGMIPASL 250
++ +G N I S +P S + L LDLS N+I + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 251 GKMAVLATLNLDFNKLSGPI----PASLMNSGISNLNLSRNMLEGKIPD-VFGPRSYFTA 305
+ + LNL + P+ P + + L L N L+ +PD +F +
Sbjct: 171 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQK 229
Query: 306 IDLAYNKLSGSIPR 319
I L N S PR
Sbjct: 230 IWLHTNPWDCSCPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 154 IGRLHRLAVLNIADNNI-SGAIPPSIANLSSLMHLDLRNNRISG 196
IG L L LN+A N I S +P +NL++L HLDL +N+I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 7/194 (3%)
Query: 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191
S P L++LDL ++ L L+ L + N I + + LSSL L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 192 NRISGPIPGSVGXXXXXXXXXXXXNQI-SGTIPSSISMIYRLADLDLSMNQISGMIPASL 250
++ +G N I S +P S + L LDLS N+I + L
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Query: 251 GKMAVLATLNLDFNKLSGPI----PASLMNSGISNLNLSRNMLEGKIPD-VFGPRSYFTA 305
+ + LNL + P+ P + + L L N L+ +PD +F +
Sbjct: 172 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQK 230
Query: 306 IDLAYNKLSGSIPR 319
I L N S PR
Sbjct: 231 IWLHTNPWDCSCPR 244
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 128 RCISSIPFLRILDLIGNK----LSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183
RC + L + NK L IPRD+ L+ D N +P ++N
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELY-------LDGNQFTLVPKELSNYKH 55
Query: 184 LMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQIS 243
L +DL NNRIS S N++ P + + L L L N IS
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 244 GMIPASLGKMAVLATLNLDFNKL 266
+ + ++ L+ L + N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 222 IPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISN 281
+P +S L +DLS N+IS + S M L TL L +N+L P + G+ +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF--DGLKS 103
Query: 282 LNL 284
L L
Sbjct: 104 LRL 106
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 126 IPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLM 185
+P+ +S+ L ++DL N++S + + +L L ++ N + P + L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 186 HLDLRNNRIS 195
L L N IS
Sbjct: 106 LLSLHGNDIS 115
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 1/154 (0%)
Query: 97 MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGR 156
+ G + A LT L L L+D + P + L L L L P
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG 126
Query: 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXN 216
L L L + DNN+ + +L +L HL L NRI + N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASL 250
++ P + + RL L L N +S M+PA +
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEV 219
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 26/142 (18%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275
NQI+ P + L +L L NQ+ + + L L+L N+L+ +P++
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSA-- 106
Query: 276 NSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335
VF + + + NKL+ +PR + +++ HL N
Sbjct: 107 --------------------VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 336 YLCGRIPDGSPFDHLEASSFAY 357
L IP G+ FD L + + AY
Sbjct: 146 QL-KSIPHGA-FDRLSSLTHAY 165
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 125 EIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL 184
E+P I ++ LR+LDL N+L+ +P ++G +L DN ++ +P NL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318
Query: 185 MHLDLRNN 192
L + N
Sbjct: 319 QFLGVEGN 326
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 98 TGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRL 157
+G + A + +LS + +AD T IP+ + P L L L GNK++ + L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--PSLTELHLDGNKITKVDAASLKGL 215
Query: 158 HRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQ 217
+ LA L ++ N+IS S+AN L L L NN++ +PG + N
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNN 274
Query: 218 ISG 220
IS
Sbjct: 275 ISA 277
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 83/227 (36%), Gaps = 46/227 (20%)
Query: 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR 193
P +LDL NK++ D L L L + +N IS P + A L L L L N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 194 IS---GPIPGSVGXXXXXXXXXXXX--------NQIS----GTIPSSISMIY-------- 230
+ +P ++ NQ+ GT P S I
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 231 -----RLAD----------------LDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP 269
R+AD L L N+I+ + ASL + LA L L FN +S
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 270 IPASLMNS-GISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSG 315
SL N+ + L+L+ N L K+P Y + L N +S
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 108 LTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIAD 167
+ +LS + +AD T IP+ + P L L L GNK++ + L+ LA L ++
Sbjct: 170 MKKLSYIRIADTNITT--IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 168 NNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISG 220
N+IS S+AN L L L NN++ +PG + N IS
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 83/227 (36%), Gaps = 46/227 (20%)
Query: 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR 193
P +LDL NK++ D L L L + +N IS P + A L L L L N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 194 IS---GPIPGSVGXXXXXXXXXXXX--------NQIS----GTIPSSISMIY-------- 230
+ +P ++ NQ+ GT P S I
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 231 -----RLAD----------------LDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP 269
R+AD L L N+I+ + ASL + LA L L FN +S
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 270 IPASLMNS-GISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSG 315
SL N+ + L+L+ N L K+P Y + L N +S
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 117 ADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLN--IADNNISGAI 174
+D K + G I +P +R L L GNKL DI L L L I N ++
Sbjct: 51 SDIKSVQG-----IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQSL 100
Query: 175 PPSIAN-LSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLA 233
P + + L++L L L N++ G NQ+ + L
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG 268
LDL NQ+ + K+ L L+L+ N+L
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 224 SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN--SGISN 281
S++ + L L L+ NQ+ + K+ L L L N+L +P + + + ++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 282 LNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRI 341
L L N L+ VF + T +DL N+L + + L + N L +
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSV 196
Query: 342 PDGSPFDHLEA 352
PDG FD L +
Sbjct: 197 PDGV-FDRLTS 206
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 58/161 (36%)
Query: 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVL 163
A L L L L+D + P + L L L L P L L L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 164 NIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIP 223
+ DN + + +L +L HL L NRIS + N+++ P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 224 SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264
+ + RL L L N +S + +L + L L L+ N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 59/163 (36%)
Query: 102 SPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLA 161
+ A L L L L+D + P + L L L L P L L
Sbjct: 72 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 131
Query: 162 VLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGT 221
L + DN + + +L +L HL L NRIS + N+++
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 222 IPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264
P + + RL L L N +S + +L + L L L+ N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 127 PRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNI-SGAIPPSIANLSSLM 185
P S + L L + KL+ IG+L L LN+A N I S +P +NL++L+
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 186 HLDLRNNRIS 195
H+DL N I
Sbjct: 157 HVDLSYNYIQ 166
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 108 LTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIAD 167
LT L++L +A + ++ L LDL +L LHRL +LN++
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 168 NNISGAIPPSIANLSSLMHLDLRNNRIS 195
NN+ L SL LD NRI
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 127 PRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNI-SGAIPPSIANLSSLM 185
P S + L L + KL+ IG+L L LN+A N I S +P +NL++L+
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 186 HLDLRNNRIS 195
H+DL N I
Sbjct: 152 HVDLSYNYIQ 161
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 108 LTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIAD 167
LT L++L +A + ++ L LDL +L LHRL +LN++
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 168 NNISGAIPPSIANLSSLMHLDLRNNRIS 195
NN+ L SL LD NRI
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 8/264 (3%)
Query: 103 PAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAV 162
P+VC + S + K + E+P IS+ R+L+L N++ L L +
Sbjct: 36 PSVCSCSNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 163 LNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTI 222
L ++ N+I + L++L L+L +NR++ IP N +I
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESI 151
Query: 223 PS-SISMIYRLADLDL-SMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGIS 280
PS + + I L LDL + ++S + + ++ L LNL L IP +
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLD 210
Query: 281 NLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGR 340
L+LS N L P F + + + +++ + ++ +HN L
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 341 IPD-GSPFDHLEASSFAYNKCLCG 363
D +P HLE +N C
Sbjct: 271 PHDLFTPLHHLERIHLHHNPWNCN 294
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXN 216
L +L LN+ N + +L+ L L L NN+++ G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 217 QISGTIPSSI-SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS 267
Q+ ++PS + + +L +L L+ NQ+ + + K+ L TL+L N+L
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXN 216
L +L LN+ N + +L+ L L L NN+++ G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 217 QISGTIPSSI-SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS 267
Q+ ++PS + + +L +L L+ NQ+ + + K+ L TL+L N+L
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 92/260 (35%), Gaps = 57/260 (21%)
Query: 103 PAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAV 162
P+VC + S + +G++ E+P+ I S R L+L+ N + LH L V
Sbjct: 47 PSVCSCSNQFSKVVCTRRGLS-EVPQGIPSNT--RYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 163 LNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTI 222
L + N+I + L+SL L+L +N ++ IP N +I
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESI 162
Query: 223 PS--------------------------SISMIYRLADLDLSMNQISGMIPASLGKMAVL 256
PS + ++ L L+L M I M +L + L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGL 220
Query: 257 ATLNLDFNKLSGPIPAS-----------LMNSGIS--------------NLNLSRNMLEG 291
L + N P S +MNS +S LNL+ N L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 292 KIPDVFGPRSYFTAIDLAYN 311
D+F P Y + L +N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 229 IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN--SGISNLNLSR 286
+ +L L LS NQI + K+ L L L NKL +P + + + + L L
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDT 109
Query: 287 NMLEGKIPD-VFGPRSYFTAIDLAYNKLSGSIPR 319
N L+ +PD +F + I L N S PR
Sbjct: 110 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 34/204 (16%)
Query: 139 LDLIGNKLSGDIPRDI-GRLHRLAVLNIADNNIS--GAIPPSIANLSSLMHLDLRNNRIS 195
L+L NKL +P + +L +L L+++ N +S G S +SL +LDL N
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--- 88
Query: 196 GPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAV 255
G I T+ S+ + +L LD + + M S+ +++
Sbjct: 89 GVI----------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSL 125
Query: 256 LATLNLDFNKLSGPIPASLMNSGISNLNLSR----NMLEGKIPDVFGPRSYFTAIDLAYN 311
+ LD + + + + +G+S+L + + + E +PD+F T +DL+
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 312 KLSGSIPRTLSAASYIGHLDFSHN 335
+L P ++ S + L+ SHN
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 104 AVCKLTRLSSLTLAD--WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLA 161
+C+++ + SL L + + I+ +C + L+ LDL L G +P + L+ L
Sbjct: 247 GLCEMS-VESLNLQEHRFSDISSTTFQCFTQ---LQELDLTATHLKG-LPSGMKGLNLLK 301
Query: 162 VLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPI-PGSVGXXXXXXXXXXXXNQISG 220
L ++ N+ S AN SL HL +R N + G + N I
Sbjct: 302 KLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA 361
Query: 221 TIPSSISM--IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPAS 273
+ S+ + + L L+LS N+ G+ + + L L+L F +L P S
Sbjct: 362 SDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275
N I P + S +L +DLS NQIS + P + + L +L L NK++ +P SL
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLF 100
Query: 276 N--SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFS 333
+ L L+ N + D F + L NKL T S I + +
Sbjct: 101 EGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 334 HN-YLC 338
N ++C
Sbjct: 161 QNPFIC 166
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275
N I P + S +L +DLS NQIS + P + + L +L L NK++ +P SL
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLF 100
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 142 IGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 199
IGN D+ + L +L L DN IS P +A+L +L+ + L+NN+IS P
Sbjct: 158 IGNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS----GPIPASLMNSGISNLNLSR 286
L L L+ N ++ + P + L L+L+ N+L+ +PA+L L++SR
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL-----EILDISR 535
Query: 287 NMLEGKIPDVFGPRSYFTAIDLAYNKL 313
N L PDVF S +D+ +NK
Sbjct: 536 NQLLAPNPDVFVSLS---VLDITHNKF 559
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 128 RCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHL 187
R ++ L++L+L NK++ L L VLN++ N + + L + ++
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 188 DLRNNRIS 195
DL+ N I+
Sbjct: 344 DLQKNHIA 351
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKL 266
NQI+ P + +L LDL NQ++ + K+ L L+L+ N+L
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 122 ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANL 181
IT P + L LDL N+L+ +L +L L++ DN + + NL
Sbjct: 50 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 109
Query: 182 SSLMHLDLRNN 192
SL H+ L NN
Sbjct: 110 KSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKL 266
NQI+ P + +L LDL NQ++ + K+ L L+L+ N+L
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 122 ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANL 181
IT P + L LDL N+L+ +L +L L++ DN + + NL
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 182 SSLMHLDLRNN 192
SL H+ L NN
Sbjct: 102 KSLTHIWLLNN 112
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 68/254 (26%)
Query: 111 LSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNI 170
+S L D+KG+ L L L+ NK+S + L +L L I+ N++
Sbjct: 66 ISELRKDDFKGLQ-----------HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 171 SGAIPPSIANLSSLMHLDLRNNRI--------------------------SGPIPGSVG- 203
IPP++ SSL+ L + +NRI SG PG+
Sbjct: 115 V-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 204 -XXXXXXXXXXXXNQISGTIPSSISMIY------------------RLADLDLSMNQISG 244
I +P +++ ++ +L L L NQI
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 245 MIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNL------NLSRNMLEGKIPDVFG 298
+ SL + L L+LD NKLS +PA L + + + N+++ + P FG
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290
Query: 299 -PRSYFTAIDLAYN 311
R+Y+ I L N
Sbjct: 291 VKRAYYNGISLFNN 304
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 134 PFLRILDLIGNKLS-GDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192
P L +LDL +L D LH L VLN++ + + + L +L HL+L+ N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 193 RI-SGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLG 251
G I + +S+ + RL L LS +S + +
Sbjct: 460 HFPKGNIQKT----------------------NSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 252 KMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYN 311
+ ++ ++L N+L+ +L + LNL+ N + +P + S I+L N
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 312 KL 313
L
Sbjct: 558 PL 559
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 187 LDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMI 246
LDL NNRI+ + N I+ S S + L LDLS N +S +
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 247 PASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR--NM-LEGKIP-DVFGPRSY 302
+ ++ L LNL N SL S ++ L + R NM KI F ++
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175
Query: 303 FTAIDLAYNKLSGSIPRTLSAASYIGHL 330
+++ + L P++L + + HL
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHL 203
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 187 LDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMI 246
LDL NNRI+ + N I+ S S + L LDLS N +S +
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 247 PASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSR--NM-LEGKIP-DVFGPRSY 302
+ ++ L LNL N SL S ++ L + R NM KI F ++
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 149
Query: 303 FTAIDLAYNKLSGSIPRTLSAASYIGHL 330
+++ + L P++L + + HL
Sbjct: 150 LEELEIDASDLQSYEPKSLKSIQNVSHL 177
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275
NQI+ P + +L L+L++NQ++ + K+ L L L N+L IP +
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS-IPMGVF 108
Query: 276 NS--GISNLNLSRNMLEGKIPDVFGPRSYF 303
++ ++++ L N + + D+ +++
Sbjct: 109 DNLKSLTHIYLFNNPWDCECSDILYLKNWI 138
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 133 IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192
+P+ R+ L ++ + G L L L+++ N + ++P L +L LD+ N
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 193 RISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 252
R++ G++ N++ P ++ +L L L+ NQ++ + L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 253 MAVLATLNLDFNKL 266
+ L TL L N L
Sbjct: 171 LENLDTLLLQENSL 184
>pdb|2XSA|A Chain A, Ogoga Apostructure
pdb|2XSB|A Chain A, Ogoga Pugnac Complex
Length = 447
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 273 SLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDF 332
L +G+ NL L + + +P+ R F + A LS + R L A GH+ F
Sbjct: 101 QLARAGLRNLVLLFDDIPSVLPE--ADRHRFDSFAEAQADLSNMVLRHLRGA---GHVVF 155
Query: 333 SHNYLCGRIPDGSP 346
CGR+ G P
Sbjct: 156 CPTEYCGRMAGGDP 169
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 105 VCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLN 164
+ LT L SL+L ++ I P ++S+ L N+++ P + RL L
Sbjct: 173 IANLTDLYSLSL-NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLK 227
Query: 165 IADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPS 224
I +N I+ P +ANLS L L++ N+IS +V NQIS S
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--S 281
Query: 225 SISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIP 271
++ + +L L L+ NQ+ +G + L TL L N ++ P
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 133 IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192
+P+ R+ L ++ + G L L L+++ N + ++P L +L LD+ N
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 193 RISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 252
R++ G++ N++ P ++ +L L L+ NQ++ + L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 253 MAVLATLNLDFNKL 266
+ L TL L N L
Sbjct: 171 LENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 133 IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192
+P+ R+ L ++ + G L L L+++ N + ++P L +L LD+ N
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 193 RISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 252
R++ G++ N++ P ++ +L L L+ NQ++ + L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 253 MAVLATLNLDFNKL 266
+ L TL L N L
Sbjct: 171 LENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 133 IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192
+P+ R+ L ++ + G L L L+++ N + ++P L +L LD+ N
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110
Query: 193 RISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 252
R++ G++ N++ P ++ +L L L+ NQ++ + L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 253 MAVLATLNLDFNKL 266
+ L TL L N L
Sbjct: 171 LENLDTLLLQENSL 184
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 122 ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANL 181
IT P + L LDL N+L+ +L +L L++ DN + + NL
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 182 SSLMHLDLRNN 192
SL H+ L NN
Sbjct: 102 RSLTHIWLLNN 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,204,621
Number of Sequences: 62578
Number of extensions: 394416
Number of successful extensions: 1150
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 276
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)