Query 017578
Match_columns 369
No_of_seqs 411 out of 4494
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.3E-42 9.3E-47 358.5 26.5 329 26-360 25-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-33 4.4E-38 293.4 19.3 269 95-365 342-611 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.3E-30 1.8E-34 234.0 1.8 295 71-367 124-458 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.4E-28 5.2E-33 224.4 1.3 264 95-360 135-428 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.7E-27 8.1E-32 218.3 -4.2 263 95-366 88-380 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-26 2.6E-31 214.9 -3.7 267 73-358 8-278 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.8E-26 8.2E-31 201.6 -10.4 251 100-361 59-310 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 4.1E-25 8.8E-30 195.1 -6.2 259 94-361 191-541 (565)
9 PLN03210 Resistant to P. syrin 99.8 7E-20 1.5E-24 193.0 20.8 265 72-361 611-906 (1153)
10 PRK15370 E3 ubiquitin-protein 99.8 4E-20 8.7E-25 183.7 16.1 310 17-361 50-428 (754)
11 KOG4237 Extracellular matrix p 99.8 5.1E-23 1.1E-27 181.5 -4.6 269 95-366 77-364 (498)
12 cd00116 LRR_RI Leucine-rich re 99.8 1E-21 2.2E-26 180.2 -0.2 265 95-360 8-319 (319)
13 PLN03210 Resistant to P. syrin 99.8 5.3E-19 1.1E-23 186.4 19.5 218 134-358 611-835 (1153)
14 KOG0618 Serine/threonine phosp 99.8 2.3E-22 4.9E-27 194.1 -5.9 219 135-360 242-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 4.2E-19 9.1E-24 175.6 15.3 175 159-361 283-458 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.7E-18 6E-23 169.9 14.4 181 135-343 283-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-18 2.2E-23 173.7 11.3 216 95-338 209-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 6.6E-20 1.4E-24 168.1 1.4 251 73-337 24-319 (319)
19 KOG0617 Ras suppressor protein 99.7 2.3E-20 5E-25 147.3 -5.0 180 132-317 31-215 (264)
20 KOG0617 Ras suppressor protein 99.7 3.5E-20 7.7E-25 146.3 -6.0 180 104-290 28-212 (264)
21 KOG0618 Serine/threonine phosp 99.7 9.7E-19 2.1E-23 169.3 -1.9 258 73-361 46-323 (1081)
22 PLN03150 hypothetical protein; 99.7 3.4E-16 7.4E-21 154.8 14.3 153 25-194 367-527 (623)
23 KOG4237 Extracellular matrix p 99.6 3.4E-18 7.4E-23 151.3 -6.6 251 112-365 70-339 (498)
24 PLN03150 hypothetical protein; 99.4 3.3E-13 7.1E-18 133.7 8.3 114 256-369 420-537 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 6.5E-15 1.4E-19 136.3 -4.6 196 132-336 73-271 (722)
26 COG4886 Leucine-rich repeat (L 99.4 5.1E-13 1.1E-17 126.2 6.8 195 138-341 97-293 (394)
27 COG4886 Leucine-rich repeat (L 99.3 2E-12 4.4E-17 122.1 7.5 193 161-361 96-290 (394)
28 KOG1909 Ran GTPase-activating 99.3 8.7E-14 1.9E-18 121.9 -3.0 227 72-313 30-310 (382)
29 KOG0532 Leucine-rich repeat (L 99.3 1.8E-13 3.8E-18 126.9 -4.1 178 156-343 73-251 (722)
30 KOG1259 Nischarin, modulator o 99.2 3.8E-12 8.3E-17 109.7 2.6 128 227-360 281-411 (490)
31 KOG3207 Beta-tubulin folding c 99.2 2E-12 4.3E-17 116.5 0.2 208 131-339 118-340 (505)
32 KOG1909 Ran GTPase-activating 99.2 1.8E-12 3.8E-17 113.8 -0.3 236 101-337 22-310 (382)
33 KOG3207 Beta-tubulin folding c 99.2 2.3E-12 5E-17 116.1 -0.5 185 130-314 142-339 (505)
34 KOG1259 Nischarin, modulator o 99.2 7.7E-12 1.7E-16 107.8 1.1 127 182-314 284-412 (490)
35 KOG4658 Apoptotic ATPase [Sign 99.1 4.7E-11 1E-15 121.3 6.2 128 108-237 544-675 (889)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3E-15 95.3 4.0 16 227-242 110-125 (175)
37 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.8E-15 92.9 4.5 108 156-268 17-127 (175)
38 KOG0531 Protein phosphatase 1, 99.0 5.3E-11 1.2E-15 112.9 -1.8 241 107-361 70-318 (414)
39 KOG0531 Protein phosphatase 1, 98.9 8.6E-11 1.9E-15 111.5 -1.6 225 104-342 90-322 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.9 1E-09 2.2E-14 111.7 5.5 109 103-213 565-675 (889)
41 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.9E-14 73.7 3.8 61 277-337 1-61 (61)
42 PF08263 LRRNT_2: Leucine rich 98.8 6.7E-09 1.4E-13 64.5 4.4 40 28-68 1-43 (43)
43 KOG1859 Leucine-rich repeat pr 98.8 1.7E-10 3.8E-15 110.2 -4.3 198 157-365 83-296 (1096)
44 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.3E-14 71.4 3.2 59 135-193 2-60 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.6 8.2E-09 1.8E-13 88.1 0.8 226 73-314 31-316 (388)
46 KOG2120 SCF ubiquitin ligase, 98.5 1.1E-09 2.4E-14 94.5 -7.4 58 135-192 186-244 (419)
47 KOG2982 Uncharacterized conser 98.5 3.9E-08 8.5E-13 85.1 1.8 200 132-331 69-285 (418)
48 KOG2120 SCF ubiquitin ligase, 98.5 1.6E-09 3.4E-14 93.6 -6.8 175 182-358 185-373 (419)
49 KOG1859 Leucine-rich repeat pr 98.5 5.3E-09 1.1E-13 100.3 -5.2 178 151-338 102-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.4 1.2E-07 2.6E-12 81.2 1.4 243 105-360 26-315 (388)
51 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.6E-12 82.2 -0.3 212 131-342 42-266 (418)
52 KOG4579 Leucine-rich repeat (L 98.2 7.5E-08 1.6E-12 74.0 -3.0 129 231-364 28-162 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 4.5E-08 9.8E-13 75.2 -5.3 87 130-219 49-136 (177)
54 PF12799 LRR_4: Leucine Rich r 98.1 4E-06 8.7E-11 52.1 3.2 36 135-171 2-37 (44)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.4E-06 1.4E-10 51.2 3.8 37 301-338 1-37 (44)
56 KOG3665 ZYG-1-like serine/thre 97.9 2E-06 4.3E-11 85.8 0.2 135 134-270 122-266 (699)
57 KOG3665 ZYG-1-like serine/thre 97.9 2.6E-06 5.7E-11 85.0 -0.2 152 109-262 122-283 (699)
58 PRK15386 type III secretion pr 97.9 0.00011 2.4E-09 68.2 9.9 137 154-312 48-188 (426)
59 KOG1644 U2-associated snRNP A' 97.7 4.7E-05 1E-09 62.8 5.0 103 254-357 42-149 (233)
60 PRK15386 type III secretion pr 97.7 0.00013 2.8E-09 67.7 8.4 137 130-288 48-188 (426)
61 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.9E-09 60.2 5.2 103 135-239 43-149 (233)
62 KOG2739 Leucine-rich acidic nu 97.3 9.3E-05 2E-09 63.5 1.8 60 134-195 43-104 (260)
63 PF13306 LRR_5: Leucine rich r 97.2 0.0014 3E-08 51.1 7.3 13 130-142 31-43 (129)
64 PF13306 LRR_5: Leucine rich r 97.2 0.0015 3.3E-08 50.9 7.3 124 128-257 6-129 (129)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00035 7.7E-09 60.0 1.9 108 101-213 35-150 (260)
66 KOG4341 F-box protein containi 96.2 6.4E-05 1.4E-09 68.5 -8.1 109 228-336 318-437 (483)
67 KOG2123 Uncharacterized conser 96.0 0.00022 4.8E-09 61.8 -5.3 82 231-315 20-102 (388)
68 KOG2123 Uncharacterized conser 95.7 0.00044 9.4E-09 60.0 -5.0 83 183-269 20-103 (388)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0073 1.6E-07 31.1 1.3 12 303-314 2-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0051 1.1E-07 31.7 0.6 18 136-154 2-19 (22)
71 KOG4308 LRR-containing protein 95.1 7.5E-05 1.6E-09 71.6 -12.9 180 135-314 88-303 (478)
72 KOG1947 Leucine rich repeat pr 94.4 0.0039 8.4E-08 60.3 -3.2 11 327-337 403-413 (482)
73 PF13504 LRR_7: Leucine rich r 93.4 0.054 1.2E-06 25.9 1.4 13 135-147 2-14 (17)
74 KOG4308 LRR-containing protein 93.2 0.00073 1.6E-08 64.9 -10.3 164 103-267 109-303 (478)
75 KOG3864 Uncharacterized conser 92.5 0.017 3.7E-07 48.0 -1.8 83 72-167 101-185 (221)
76 KOG1947 Leucine rich repeat pr 92.2 0.01 2.3E-07 57.3 -4.2 17 320-336 357-373 (482)
77 KOG0473 Leucine-rich repeat pr 90.8 0.005 1.1E-07 52.2 -6.7 87 104-194 37-123 (326)
78 PF13516 LRR_6: Leucine Rich r 89.9 0.096 2.1E-06 27.4 0.0 18 301-318 2-19 (24)
79 KOG3864 Uncharacterized conser 89.7 0.031 6.7E-07 46.5 -2.9 80 231-310 102-185 (221)
80 smart00369 LRR_TYP Leucine-ric 89.1 0.42 9.1E-06 25.4 2.2 14 134-147 2-15 (26)
81 smart00370 LRR Leucine-rich re 89.1 0.42 9.1E-06 25.4 2.2 14 134-147 2-15 (26)
82 KOG4341 F-box protein containi 88.4 0.18 3.8E-06 46.8 0.7 158 108-265 267-437 (483)
83 KOG0473 Leucine-rich repeat pr 84.4 0.021 4.5E-07 48.6 -6.9 88 129-219 37-124 (326)
84 smart00364 LRR_BAC Leucine-ric 81.5 1 2.2E-05 24.1 1.3 18 325-343 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 75.5 2.5 5.5E-05 22.6 1.8 15 324-338 1-15 (26)
86 smart00368 LRR_RI Leucine rich 72.7 3.1 6.6E-05 22.6 1.7 14 325-338 2-15 (28)
87 KOG3763 mRNA export factor TAP 70.1 1.6 3.4E-05 42.1 0.3 63 252-316 216-285 (585)
88 KOG4242 Predicted myosin-I-bin 62.6 26 0.00057 33.5 6.6 59 136-194 216-280 (553)
89 KOG3763 mRNA export factor TAP 62.1 4.2 9E-05 39.4 1.4 63 228-291 216-284 (585)
90 smart00367 LRR_CC Leucine-rich 53.5 12 0.00026 19.7 1.7 11 134-144 2-12 (26)
91 PF07172 GRP: Glycine rich pro 51.2 11 0.00024 27.5 1.8 11 4-14 3-13 (95)
92 PF02950 Conotoxin: Conotoxin; 26.6 31 0.00068 23.6 0.8 6 55-60 61-66 (75)
93 TIGR00864 PCC polycystin catio 23.0 53 0.0011 38.7 2.1 31 307-337 1-31 (2740)
94 PLN03207 stomagen; Provisional 22.8 71 0.0015 23.2 2.0 19 1-19 6-24 (113)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-42 Score=358.51 Aligned_cols=329 Identities=35% Similarity=0.593 Sum_probs=252.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCCCCccceEeCCCCCcEEEEEcCCCCCch----hhhhc------c-C
Q 017578 26 CCPPSERAALLAFKAALHEPYLGIFNSWT-GNDCCHNWYGVSCDQETHRVADINLRGESEDP----IFQRA------H-R 93 (369)
Q Consensus 26 ~~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~----~~~~~------~-~ 93 (369)
...++|++||++||+++.+ +...+.+|. ..+||. |.||+|+. .++|++||+++..... .+..+ . .
T Consensus 25 ~~~~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~~c~-w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 25 MLHAEELELLLSFKSSIND-PLKYLSNWNSSADVCL-WQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS 101 (968)
T ss_pred CCCHHHHHHHHHHHHhCCC-CcccCCCCCCCCCCCc-CcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence 3367899999999999964 445678997 678886 99999985 4699999999843221 11111 1 2
Q ss_pred CCcceeecCcccc-CCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCC
Q 017578 94 TGYMTGYISPAVC-KLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISG 172 (369)
Q Consensus 94 ~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~ 172 (369)
.|.+.|.+|..+. .+++|++|++++ +.+.+.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~-n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSN-NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcC-CccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 3445555665544 666666666663 555555553 346677777777777777777777888888888888888877
Q ss_pred cCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhC
Q 017578 173 AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 252 (369)
Q Consensus 173 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 252 (369)
.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..++.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 77888888888888888888887778888888888888888888888788888888888888888888888778888888
Q ss_pred CCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEE
Q 017578 253 MAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLD 331 (369)
Q Consensus 253 l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 331 (369)
+++|++|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 888888888888888777777666 7888888888888888888888888888888888888888888888888888888
Q ss_pred cccCcCceeCCC-CCCCCCccccccccCCC
Q 017578 332 FSHNYLCGRIPD-GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 332 ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~ 360 (369)
+++|.++|.+|. ...+++|+.|++++|..
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 888888887776 45677888888888764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-33 Score=293.43 Aligned_cols=269 Identities=36% Similarity=0.558 Sum_probs=223.6
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
|.+.+.+|..++.+++|+.|++++ +.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLST-NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCC-CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 555666666666666677777663 6666666666666667777777777776667777777777777777777777777
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCC
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMA 254 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 254 (369)
|..+.++++|++|++++|.+.+.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++..|..+..++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh
Confidence 7777777788888888887777777777778888888888888877777655 457889999999999988999999999
Q ss_pred CCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcc
Q 017578 255 VLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFS 333 (369)
Q Consensus 255 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 333 (369)
+|++|++++|.+.+.+|..+.. ++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 9999999999999999988877 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCceeCCCCCCCCCccccccccCCCcccCC
Q 017578 334 HNYLCGRIPDGSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 334 ~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
+|++.|.+|....+..+....+.+|+.+|+.+
T Consensus 580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999998888888888899999999865
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=8.3e-30 Score=233.98 Aligned_cols=295 Identities=24% Similarity=0.289 Sum_probs=162.4
Q ss_pred CCcEEEEEcCCCCCchh----------hhhccCCCcceeecC-ccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEE
Q 017578 71 THRVADINLRGESEDPI----------FQRAHRTGYMTGYIS-PAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRIL 139 (369)
Q Consensus 71 ~~~v~~l~l~~~~~~~~----------~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 139 (369)
.++++.|+|...-+..+ .+.++.+.+...+++ +.+..-.++++|+|++ |.++..-...|.++.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheee
Confidence 57899999988543311 122222223333333 4555566777777774 66665555566777777777
Q ss_pred EcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCc------------------------cC
Q 017578 140 DLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR------------------------IS 195 (369)
Q Consensus 140 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~------------------------l~ 195 (369)
.|+.|+++...+..|.++++|+.|+|..|++.-.-.-.|..+++|+.|.+..|. ++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 777777774334455667777777777776652212234444444444444444 43
Q ss_pred CCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccc
Q 017578 196 GPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLM 275 (369)
Q Consensus 196 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 275 (369)
..-..++..+++|++|++++|.+....++++...++|++|+|+.|+++..-+.+|..+..|++|+|++|++.......+.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 33333444444455555555544444445555555555555555555544444555555555555555555432222222
Q ss_pred c-CCCCEEEcccCcCcccCC---cccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCc
Q 017578 276 N-SGISNLNLSRNMLEGKIP---DVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHL 350 (369)
Q Consensus 276 ~-~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L 350 (369)
. ++|++|||++|.++..+- ..|..+++|+.|++.+|++....-..|..++.|++|||.+|.|-..-|. ..++ .|
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 2 556666666666554332 2345566666666666666644445666666677777766666533333 1223 55
Q ss_pred cccccccCCCcccCCCC
Q 017578 351 EASSFAYNKCLCGKPLR 367 (369)
Q Consensus 351 ~~l~l~~N~~~c~~~l~ 367 (369)
.+|.+.--.++|||+++
T Consensus 442 k~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 442 KELVMNSSSFLCDCQLK 458 (873)
T ss_pred hhhhhcccceEEeccHH
Confidence 56666666788999875
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-28 Score=224.44 Aligned_cols=264 Identities=23% Similarity=0.231 Sum_probs=148.0
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
|.++..-.+.++.++.||+|||+. |.+...--..|..-.++++|+|++|+|+..-...|..+.+|..|.|++|.++...
T Consensus 135 N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 333333345566666667777663 4444322233444556777777777776544455666667777777777776333
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCC
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMA 254 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 254 (369)
+..|.++++|+.|+|..|++.-.-.-.|..+++|+.|.+..|.+...-...|..+.++++|+|..|++...-..++.+++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 33455577777777777766522223344444444444444444433333444455555555555555544444555555
Q ss_pred CCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCc------------------------ccCCCCCCCEEEee
Q 017578 255 VLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPD------------------------VFGPRSYFTAIDLA 309 (369)
Q Consensus 255 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~------------------------~~~~~~~L~~L~L~ 309 (369)
+|+.|++++|.|....++.+.. ++|++|+|++|+++...+. .|..+++|++|||+
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 5555555555555444444444 5555555555555543333 34455666666666
Q ss_pred CCcccccchh---hccCCCCCCEEEcccCcCceeCCC--CCCCCCccccccccCCC
Q 017578 310 YNKLSGSIPR---TLSAASYIGHLDFSHNYLCGRIPD--GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 310 ~n~l~~~~p~---~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~L~~l~l~~N~~ 360 (369)
+|.++..+.+ .|..+++|+.|++.+|++. .||. ...++.||.|++.+|+.
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence 6666554432 3555667777777777665 5554 33567777777777764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.7e-27 Score=218.32 Aligned_cols=263 Identities=27% Similarity=0.398 Sum_probs=187.9
Q ss_pred Ccc-eeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChh-ccCCCCCCEEEeecCcCCC
Q 017578 95 GYM-TGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRD-IGRLHRLAVLNIADNNISG 172 (369)
Q Consensus 95 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~~~~ 172 (369)
|++ ...+|+.+.++..|+.|||+. |.+. +.|..+...+++-+|+|++|+|. ++|.. +.+++.|-+|||++|++.
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLSh-NqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSH-NQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred cccccCCCCchhcccccceeeecch-hhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence 444 345889999999999999995 6666 67888888889999999999998 67765 468888999999999988
Q ss_pred cCCccccCCCCCcEEEcccCccCC-------------------------CCCCcccCCCCCCEEEcccccCCccCCchhc
Q 017578 173 AIPPSIANLSSLMHLDLRNNRISG-------------------------PIPGSVGRLRMMSRALLSRNQISGTIPSSIS 227 (369)
Q Consensus 173 ~~~~~l~~l~~L~~L~l~~n~l~~-------------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 227 (369)
.+|+.+.++.+|++|+|++|.+.. .+|.++..+.+|+.++++.|.+. .+|+.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 788888888889999988887542 23444444555555555555554 4555555
Q ss_pred CCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCc-ccCCcccCCCCCCCE
Q 017578 228 MIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLE-GKIPDVFGPRSYFTA 305 (369)
Q Consensus 228 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~ 305 (369)
.+.+|+.|++++|+++ .+....+.+.+|++|+++.|+++ .+|..+.. ++|+.|.+.+|+++ ..+|+.++.+.+|++
T Consensus 243 ~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 5555555555555555 33334444555555555555555 45555544 56666666666554 345666777777777
Q ss_pred EEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCC
Q 017578 306 IDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 306 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
+..++|.+. -.|+.++.+..|+.|.|++|.+. .+|. +.-++.|+.||+..||.+--+|=
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 777777776 78888999999999999999988 5555 55688999999999998876653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-26 Score=214.94 Aligned_cols=267 Identities=24% Similarity=0.344 Sum_probs=138.9
Q ss_pred cEEEEEcCCCCCchhhhhccCCCcce-eecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 73 RVADINLRGESEDPIFQRAHRTGYMT-GYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
-|+.+|++| |.++ +..|..+..+++++-|.|.. ..+. .+|+.++.+.+|++|.+++|++. .+-
T Consensus 8 FVrGvDfsg-------------NDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vh 71 (1255)
T KOG0444|consen 8 FVRGVDFSG-------------NDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQLI-SVH 71 (1255)
T ss_pred eeecccccC-------------CcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhhH-hhh
Confidence 577888888 5555 34566666666666666652 3332 45666666666666666666655 344
Q ss_pred hhccCCCCCCEEEeecCcCC-CcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCC
Q 017578 152 RDIGRLHRLAVLNIADNNIS-GAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIY 230 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 230 (369)
..+..++.|+.++++.|++. ..+|..+..+..|+.|||++|.+. +.|..+..-+++-.|+|++|.+..+..+-+.++.
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 45555556666666655553 344555555666666666666555 5555555555555666666655533333345555
Q ss_pred CCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCc-ccCCcccCCCCCCCEEEe
Q 017578 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLE-GKIPDVFGPRSYFTAIDL 308 (369)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L 308 (369)
.|-.||+++|++. .+|..+..+..|++|+|++|.+....-..+.. ++|+.|.+++.+-+ ..+|.++..+.+|..+|+
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 5555566665555 34445555555555555555543222222222 44444444443322 234444444444445555
Q ss_pred eCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccC
Q 017578 309 AYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYN 358 (369)
Q Consensus 309 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N 358 (369)
+.|.+. .+|+.+.++++|+.|+||+|+|+..--....+.+|++|.++.|
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 554444 4444444444454555554444432222233444444444444
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.8e-26 Score=201.62 Aligned_cols=251 Identities=27% Similarity=0.403 Sum_probs=223.5
Q ss_pred ecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcccc
Q 017578 100 YISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIA 179 (369)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 179 (369)
.+.+++.++..|.+|++.+ +.+. .+|.+++.+..++.+++++|++. .+|..++.+..|..++.++|.+. .+|+.++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~-n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHD-NKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEecc-chhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence 4567788999999999995 6555 68888999999999999999999 89999999999999999999998 8899999
Q ss_pred CCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEE
Q 017578 180 NLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATL 259 (369)
Q Consensus 180 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 259 (369)
.+..|+.++..+|+++ ..|..+.++.++..+++.+|++. ..|+..-+++.|++||...|-+. .+|..++.+.+|+-|
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 9999999999999998 78889999999999999999998 45555555999999999999887 789999999999999
Q ss_pred eccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcc-cCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCc
Q 017578 260 NLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDV-FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 260 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
++..|++. ..|+.-+.+.|++|+++.|++. .+|.. ...++++..||+..|++. +.|+.+..+++|.+||+|+|.++
T Consensus 212 yL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 212 YLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred Hhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 99999997 7775444499999999999998 55544 458999999999999999 89999999999999999999999
Q ss_pred eeCCCCCCCCCccccccccCCCc
Q 017578 339 GRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 339 g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
+-.+..+.+ .|..|.+.|||..
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cCCcccccc-eeeehhhcCCchH
Confidence 777777777 8999999999953
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=4.1e-25 Score=195.13 Aligned_cols=259 Identities=24% Similarity=0.339 Sum_probs=186.8
Q ss_pred CCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhcc-CCCCCCEEEeecCcCCC
Q 017578 94 TGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIG-RLHRLAVLNIADNNISG 172 (369)
Q Consensus 94 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~ 172 (369)
..++-+.+|+.++.+.+|+.|++.. +.+. .+| .|.++..|++++++.|.+. .+|+... +++++..||++.|++.
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRR-NKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhh-cccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence 3456677888888888888888874 5544 455 5777788888888888877 6777665 7899999999999998
Q ss_pred cCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCc--------------------------------
Q 017578 173 AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISG-------------------------------- 220 (369)
Q Consensus 173 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-------------------------------- 220 (369)
+.|..+.-+.+|++||+++|.++ .+|..++++ +|+.|.+.+|.+..
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 88988888999999999999998 678889998 89999998887620
Q ss_pred --------------------------------cCCchhcCCC---CCCEEEeecCCcc----------------------
Q 017578 221 --------------------------------TIPSSISMIY---RLADLDLSMNQIS---------------------- 243 (369)
Q Consensus 221 --------------------------------~~~~~l~~l~---~L~~L~l~~n~l~---------------------- 243 (369)
.+|.....-. -...++++.|++.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc
Confidence 0111110000 1334445555443
Q ss_pred -cccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhc
Q 017578 244 -GMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTL 321 (369)
Q Consensus 244 -~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 321 (369)
+.+|..+..+++|..|++++|.+. .+|..++. ..|+.|+++.|+|. .+|..+-.+..++.+-.++|++....|+.+
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 234445566677777777777665 56666655 55777777777776 666666555666666666777775566668
Q ss_pred cCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCc
Q 017578 322 SAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 322 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
..+.+|+.||+.+|.+....|..+.+.+|++|+++||||.
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 8889999999999999855556778999999999999987
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=7e-20 Score=192.99 Aligned_cols=265 Identities=22% Similarity=0.274 Sum_probs=186.4
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
..++.|++++ +.+. .++..+..+++|+.|+++++.. ...+|. +..+++|++|++++|.....+|
T Consensus 611 ~~L~~L~L~~-------------s~l~-~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 611 ENLVKLQMQG-------------SKLE-KLWDGVHSLTGLRNIDLRGSKN-LKEIPD-LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred cCCcEEECcC-------------cccc-ccccccccCCCCCEEECCCCCC-cCcCCc-cccCCcccEEEecCCCCccccc
Confidence 3677788887 4333 3556667788888888875333 335553 6777888888888776555777
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCch------
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSS------ 225 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~------ 225 (369)
..+..+++|++|++++|.....+|..+ ++++|++|++++|.....+|.. ..+|+.|++.+|.+. .+|..
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L 749 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENL 749 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccccc
Confidence 778888888888888765444666654 6777777777777654444432 345666666666654 23321
Q ss_pred ------------------------hcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCE
Q 017578 226 ------------------------ISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISN 281 (369)
Q Consensus 226 ------------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 281 (369)
....++|+.|++++|...+.+|.+++++++|+.|++++|..-+.+|.....++|++
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~ 829 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLES 829 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCE
Confidence 11235788888888877778899999999999999998865557776664488999
Q ss_pred EEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCC
Q 017578 282 LNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 282 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~ 360 (369)
|++++|..-..+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|. ...+++|+.+++.+++.
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 999987655455543 357889999999998 7888999999999999998643334544 45677788888877754
Q ss_pred c
Q 017578 361 L 361 (369)
Q Consensus 361 ~ 361 (369)
+
T Consensus 906 L 906 (1153)
T PLN03210 906 L 906 (1153)
T ss_pred c
Confidence 4
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=4e-20 Score=183.65 Aligned_cols=310 Identities=21% Similarity=0.339 Sum_probs=187.4
Q ss_pred HHHhhhccCCCCHHHHHHHHHHHHhcCCCCCCCCCC----CC-CCCCCCCc---------------cceEeCCCCCcEEE
Q 017578 17 LAVSSSVVNCCPPSERAALLAFKAALHEPYLGIFNS----WT-GNDCCHNW---------------YGVSCDQETHRVAD 76 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~----W~-~~~~c~~w---------------~gv~C~~~~~~v~~ 76 (369)
+.-..+..+...++|.+.+++.++.+..|. +..+ |. ..++|-.= ..|.|.+ ..|+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~--~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~ 125 (754)
T PRK15370 50 IAYLCHPPETASPEEIKSKFECLRMLAFPA--YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTY 125 (754)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhcCCc--hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Ccccc
Confidence 344455666788899999999999997653 3344 87 56777411 2256654 35555
Q ss_pred EEcCCCCCchh-----------------hhhcc---------------------------CCCcceeecCccccCCCCCC
Q 017578 77 INLRGESEDPI-----------------FQRAH---------------------------RTGYMTGYISPAVCKLTRLS 112 (369)
Q Consensus 77 l~l~~~~~~~~-----------------~~~~~---------------------------~~~~~~~~~~~~l~~l~~L~ 112 (369)
+..-|....+. ..... ....++ .+|..+. +.|+
T Consensus 126 l~~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~ 202 (754)
T PRK15370 126 TRVTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQIT 202 (754)
T ss_pred cccccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCc
Confidence 55544211000 00000 001111 2333332 3567
Q ss_pred EEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccC
Q 017578 113 SLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192 (369)
Q Consensus 113 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 192 (369)
.|++++ +.+. .+|..+. ++|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|..+. .+|++|++++|
T Consensus 203 ~L~Ls~-N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 203 TLILDN-NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN 272 (754)
T ss_pred EEEecC-CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC
Confidence 777764 5555 3454433 46777777777776 4565443 35777777777776 5665553 46777777777
Q ss_pred ccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCc
Q 017578 193 RISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPA 272 (369)
Q Consensus 193 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 272 (369)
++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +|..+. ++|++|++++|.+++ +|.
T Consensus 273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 273 KIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPA 342 (754)
T ss_pred ccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CCh
Confidence 776 4555443 467777777777763 444332 356777777777763 444332 577888888887773 555
Q ss_pred ccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCC-----CCC
Q 017578 273 SLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDG-----SPF 347 (369)
Q Consensus 273 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-----~~~ 347 (369)
.+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|.. ...
T Consensus 343 ~l~-~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 343 SLP-PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hhc-CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 443 67888888888887 4555443 57888888888887 5565543 35778888888887 45541 124
Q ss_pred CCccccccccCCCc
Q 017578 348 DHLEASSFAYNKCL 361 (369)
Q Consensus 348 ~~L~~l~l~~N~~~ 361 (369)
+++..+++.+||+.
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 66777888888864
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=5.1e-23 Score=181.54 Aligned_cols=269 Identities=22% Similarity=0.204 Sum_probs=177.6
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCC-CcCcccCChhccCCCCCCEEEeecCcCCCc
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIG-NKLSGDIPRDIGRLHRLAVLNIADNNISGA 173 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~ 173 (369)
|.++...+.+|+.+++||.|||+. |.+...-|.+|.+++.|..|.+-+ |+|+......|++|..|+.|.+.-|++.-.
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred CCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 566666666677777777777774 666666677777777666655554 677633334466777777777777776644
Q ss_pred CCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCC------------ccCCchhcCCCCCCEEEeecCC
Q 017578 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQIS------------GTIPSSISMIYRLADLDLSMNQ 241 (369)
Q Consensus 174 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L~~L~l~~n~ 241 (369)
....|..+++|..|.+..|.+...--..+..+..++.+.+..|.+. ...|-.++......-..+.+.+
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 4556667777777777777766332235666677777776666521 1122223333333333333333
Q ss_pred cccccchhhhCCCCCcEE--ecc-CCcCcCCCCccccc--CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc
Q 017578 242 ISGMIPASLGKMAVLATL--NLD-FNKLSGPIPASLMN--SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 242 l~~~~~~~l~~l~~L~~L--~L~-~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
+...-+..+.. +++.+ .+. .+...+..|..-.. ++|++|+|++|+++++-+.+|.....++.|.|..|++...
T Consensus 236 i~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v 313 (498)
T KOG4237|consen 236 INQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV 313 (498)
T ss_pred hcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH
Confidence 33322222221 12222 222 22333455554333 9999999999999999999999999999999999999866
Q ss_pred chhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCC
Q 017578 317 IPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 317 ~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
-...|.++..|+.|+|.+|+|+-.-|. ......|.++.+..||+.|+|.+
T Consensus 314 ~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 314 SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 677788999999999999999976664 34566788999999999999976
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=1e-21 Score=180.16 Aligned_cols=265 Identities=19% Similarity=0.255 Sum_probs=191.1
Q ss_pred Ccce-eecCccccCCCCCCEEecCCCCCCcc----ccCccCCCCCCCCEEEcCCCcCcc------cCChhccCCCCCCEE
Q 017578 95 GYMT-GYISPAVCKLTRLSSLTLADWKGITG----EIPRCISSIPFLRILDLIGNKLSG------DIPRDIGRLHRLAVL 163 (369)
Q Consensus 95 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~----~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L 163 (369)
+.++ ......+..++.|+.|++++ +.+.. .++..+...+.+++++++++.+.+ .++..+..+++|++|
T Consensus 8 ~~l~~~~~~~~~~~l~~L~~l~l~~-~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 8 ELLKTERATELLPKLLCLQVLRLEG-NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred CcccccchHHHHHHHhhccEEeecC-CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 3444 34455566777899999995 66533 255566778889999999888762 233456778899999
Q ss_pred EeecCcCCCcCCccccCCCC---CcEEEcccCccCC----CCCCcccCC-CCCCEEEcccccCCcc----CCchhcCCCC
Q 017578 164 NIADNNISGAIPPSIANLSS---LMHLDLRNNRISG----PIPGSVGRL-RMMSRALLSRNQISGT----IPSSISMIYR 231 (369)
Q Consensus 164 ~L~~n~~~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~ 231 (369)
++++|.+.+..+..+..+.. |++|++++|++.+ .+...+..+ ++|++|++++|.+++. ++..+..+++
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 99999887655555555554 9999999998763 222345566 8899999999998842 3445677788
Q ss_pred CCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCCccc----cc-CCCCEEEcccCcCcccCCcccC----
Q 017578 232 LADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIPASL----MN-SGISNLNLSRNMLEGKIPDVFG---- 298 (369)
Q Consensus 232 L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~----~~-~~L~~L~L~~n~l~~~~~~~~~---- 298 (369)
|++|++++|.+++. ++..+...++|++|++++|.+++.....+ .. ++|++|++++|.+++.....+.
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 99999999998743 34455666799999999998875433322 22 7899999999998863322221
Q ss_pred -CCCCCCEEEeeCCcccc----cchhhccCCCCCCEEEcccCcCcee----CC-CCCCC-CCccccccccCCC
Q 017578 299 -PRSYFTAIDLAYNKLSG----SIPRTLSAASYIGHLDFSHNYLCGR----IP-DGSPF-DHLEASSFAYNKC 360 (369)
Q Consensus 299 -~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~----ip-~~~~~-~~L~~l~l~~N~~ 360 (369)
..+.|++|++++|.+++ .+...+..+++|+++++++|.++.. +. ....+ +.++++++.+||+
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 24789999999999973 3455667778999999999999844 22 13345 7899999999885
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=5.3e-19 Score=186.38 Aligned_cols=218 Identities=19% Similarity=0.213 Sum_probs=88.5
Q ss_pred CCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEc
Q 017578 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 213 (369)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 213 (369)
.+|+.|+++++.+. .++..+..+++|++|+|+++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44444444444444 344444444444444444443222333 2344444444444444433344444444444455544
Q ss_pred ccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCc---
Q 017578 214 SRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLE--- 290 (369)
Q Consensus 214 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~--- 290 (369)
++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+..++|++|++.++...
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcc
Confidence 4443333333332 3444444444444332223221 233444444444433 2222211122222222111000
Q ss_pred ----ccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccC
Q 017578 291 ----GKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYN 358 (369)
Q Consensus 291 ----~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N 358 (369)
...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|....+++|+.|++++|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 00000011123455555555544445555555555555555555544444554334444555555444
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=2.3e-22 Score=194.13 Aligned_cols=219 Identities=28% Similarity=0.396 Sum_probs=155.5
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLS 214 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 214 (369)
+|+++++++|+++ .+|..++.+.+|+.+...+|.++ .+|..+...++|+.|.+..|.+. .+|.....++.|++|+|.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4555555555555 34455555555555555555554 44555555555555555555554 333444445555555555
Q ss_pred cccCCc------------------------cCC-chhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCC
Q 017578 215 RNQISG------------------------TIP-SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP 269 (369)
Q Consensus 215 ~n~~~~------------------------~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 269 (369)
.|.+.. ..| ..=..++.|+.|++.+|.+++..-..+.+.++|+.|+|++|++. .
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 554431 111 11123456888999999999887778889999999999999997 6
Q ss_pred CCccccc--CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCce-eCCCCCC
Q 017578 270 IPASLMN--SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCG-RIPDGSP 346 (369)
Q Consensus 270 ~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g-~ip~~~~ 346 (369)
+|..... ..|+.|+||+|+++ .+|+.+..++.|++|...+|++. ..| .+.+++.|+.+|+|.|+++. .+|...+
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 6665444 88999999999999 88899999999999999999998 777 78899999999999999974 5676556
Q ss_pred CCCccccccccCCC
Q 017578 347 FDHLEASSFAYNKC 360 (369)
Q Consensus 347 ~~~L~~l~l~~N~~ 360 (369)
.++|+.||++||..
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 68999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.2e-19 Score=175.62 Aligned_cols=175 Identities=25% Similarity=0.326 Sum_probs=88.6
Q ss_pred CCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEee
Q 017578 159 RLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLS 238 (369)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 238 (369)
.|+.|++++|+++ .+|.. .++|++|++++|.+.+ +|... .+|+.|++.+|.+++ +|.. ..+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc-cccc---ccccceEecC
Confidence 3444555555544 33331 2456666666666553 33211 234444455555442 3321 1356666666
Q ss_pred cCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccch
Q 017578 239 MNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIP 318 (369)
Q Consensus 239 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 318 (369)
+|++++ +|.. ..+|+.|++++|.++ .+|... .+|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|
T Consensus 351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~--~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP 418 (788)
T PRK15387 351 DNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLP 418 (788)
T ss_pred CCccCC-CCCC---Ccccceehhhccccc-cCcccc--cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCC
Confidence 666663 3432 234555556665555 233321 456666666666662 3332 245666666666665 344
Q ss_pred hhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCc
Q 017578 319 RTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 319 ~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~ 361 (369)
... .+|+.|++++|+++ .+|. ...+++|+.+++++|++.
T Consensus 419 ~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 419 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 322 34556666666665 4554 334556666666666654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.7e-18 Score=169.87 Aligned_cols=181 Identities=25% Similarity=0.322 Sum_probs=141.5
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLS 214 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 214 (369)
.|+.|++++|+++ .+|. .+++|++|++++|+++ .+|... .+|+.|++++|.++ .+|.. ..+|++|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCCc---ccccccccccCccc-ccccc---ccccceEecC
Confidence 4555666666665 3443 2478999999999998 456533 46888999999997 45542 2579999999
Q ss_pred cccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCC
Q 017578 215 RNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIP 294 (369)
Q Consensus 215 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 294 (369)
+|+++. +|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|.++ .+|... ++|+.|++++|.+++ +|
T Consensus 351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~--s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 351 DNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP--SELKELMVSGNRLTS-LP 418 (788)
T ss_pred CCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc--cCCCEEEccCCcCCC-CC
Confidence 999984 5543 3578889999999984 6653 357999999999998 455432 689999999999984 66
Q ss_pred cccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 295 DVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 295 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+++|.+|.
T Consensus 419 ~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 53 357889999999998 8999999999999999999999987655
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1e-18 Score=173.71 Aligned_cols=216 Identities=20% Similarity=0.391 Sum_probs=170.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
|.++ .+|..+. ++|+.|++++ +.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|++|++++|+++ .+
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~-N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~L 277 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANS-NQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CL 277 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCC-Cccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cc
Confidence 5555 4666554 5899999995 7776 5666543 47999999999998 7887764 58999999999998 67
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCC
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMA 254 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 254 (369)
|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+. +
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~ 346 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--P 346 (754)
T ss_pred ccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--C
Confidence 87664 58999999999998 4555443 479999999999984 555443 689999999999984 676654 7
Q ss_pred CCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhc----cCCCCCCEE
Q 017578 255 VLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTL----SAASYIGHL 330 (369)
Q Consensus 255 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L 330 (369)
+|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ..|+.|++++|++. .+|..+ ...+++..|
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred cccEEECCCCCCC-cCChhhc-CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 8999999999997 5666543 78999999999999 5565554 46999999999998 556544 445889999
Q ss_pred EcccCcCc
Q 017578 331 DFSHNYLC 338 (369)
Q Consensus 331 ~ls~N~l~ 338 (369)
++.+|+++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 99999985
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=6.6e-20 Score=168.10 Aligned_cols=251 Identities=22% Similarity=0.283 Sum_probs=187.9
Q ss_pred cEEEEEcCCCCCchhhhhccCCCccee----ecCccccCCCCCCEEecCCCCCCc------cccCccCCCCCCCCEEEcC
Q 017578 73 RVADINLRGESEDPIFQRAHRTGYMTG----YISPAVCKLTRLSSLTLADWKGIT------GEIPRCISSIPFLRILDLI 142 (369)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------~~~p~~~~~l~~L~~L~L~ 142 (369)
.++.+++++ +.++. .+++.+...+.++++++++ +.+. ..++..+..+++|++|+++
T Consensus 24 ~L~~l~l~~-------------~~l~~~~~~~i~~~l~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 89 (319)
T cd00116 24 CLQVLRLEG-------------NTLGEEAAKALASALRPQPSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLS 89 (319)
T ss_pred hccEEeecC-------------CCCcHHHHHHHHHHHhhCCCceEEeccc-cccCCcchHHHHHHHHHHhcCceeEEEcc
Confidence 377888888 44432 3566778888999999985 4444 2244567778999999999
Q ss_pred CCcCcccCChhccCCCC---CCEEEeecCcCCC----cCCccccCC-CCCcEEEcccCccCCC----CCCcccCCCCCCE
Q 017578 143 GNKLSGDIPRDIGRLHR---LAVLNIADNNISG----AIPPSIANL-SSLMHLDLRNNRISGP----IPGSVGRLRMMSR 210 (369)
Q Consensus 143 ~n~l~~~~p~~~~~l~~---L~~L~L~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~ 210 (369)
+|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 90 DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169 (319)
T ss_pred CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE
Confidence 99998666666655555 9999999999873 223345566 8999999999998843 3345667789999
Q ss_pred EEcccccCCcc----CCchhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCCcccc------c
Q 017578 211 ALLSRNQISGT----IPSSISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIPASLM------N 276 (369)
Q Consensus 211 L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------~ 276 (369)
|++++|.+++. ++..+..+++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+. .
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 99999998852 344566678999999999998744 344566788999999999998863332222 1
Q ss_pred CCCCEEEcccCcCcc----cCCcccCCCCCCCEEEeeCCccccc----chhhccCC-CCCCEEEcccCcC
Q 017578 277 SGISNLNLSRNMLEG----KIPDVFGPRSYFTAIDLAYNKLSGS----IPRTLSAA-SYIGHLDFSHNYL 337 (369)
Q Consensus 277 ~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~ls~N~l 337 (369)
+.|++|++++|.+++ .+...+..+++|+++++++|.++.. +...+... +.|+++++.+|.+
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 689999999999973 3344566678999999999999865 45555555 7899999998864
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.3e-20 Score=147.32 Aligned_cols=180 Identities=26% Similarity=0.429 Sum_probs=105.1
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEE
Q 017578 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRA 211 (369)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 211 (369)
++.+.+.|.+++|+++ .+|..++.+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445555666666666 55556666666666666666665 56666666666666666666655 556666666666666
Q ss_pred EcccccCCc-cCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcC
Q 017578 212 LLSRNQISG-TIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNML 289 (369)
Q Consensus 212 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 289 (369)
++.+|.+.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..+.. ..|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 666665543 34555666666666666666665 45666666666666666666654 45555555 6666666666666
Q ss_pred cccCCcccCCCC---CCCEEEeeCCcccccc
Q 017578 290 EGKIPDVFGPRS---YFTAIDLAYNKLSGSI 317 (369)
Q Consensus 290 ~~~~~~~~~~~~---~L~~L~L~~n~l~~~~ 317 (369)
+ .+|..++.+. +=+.+.+.+|.....+
T Consensus 186 ~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 186 T-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred e-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 6 4444443321 1223344555544333
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-20 Score=146.27 Aligned_cols=180 Identities=23% Similarity=0.463 Sum_probs=148.9
Q ss_pred cccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCC
Q 017578 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 183 (369)
.+.++.+++.|.++. +.++ .+|+.+..+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSH-NKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSH-NKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhccc-Ccee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 355677777788884 6665 56777889999999999999998 78889999999999999999988 88999999999
Q ss_pred CcEEEcccCccC-CCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEecc
Q 017578 184 LMHLDLRNNRIS-GPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLD 262 (369)
Q Consensus 184 L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 262 (369)
|+.||+++|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|+++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 999999998876 357888888999999999999998 78899999999999999999887 689999999999999999
Q ss_pred CCcCcCCCCccccc----CCCCEEEcccCcCc
Q 017578 263 FNKLSGPIPASLMN----SGISNLNLSRNMLE 290 (369)
Q Consensus 263 ~n~l~~~~~~~~~~----~~L~~L~L~~n~l~ 290 (369)
+|+++ .+|+.++. .+-+.+.+.+|...
T Consensus 182 gnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 182 GNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred cceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 99998 66665544 22233444555443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=9.7e-19 Score=169.29 Aligned_cols=258 Identities=22% Similarity=0.307 Sum_probs=179.7
Q ss_pred cEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCCh
Q 017578 73 RVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPR 152 (369)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 152 (369)
++.+||++. +..+..|..+..+.+|+.|+++. +.+. .+|....++.+|+++.|.+|.+. ..|.
T Consensus 46 ~L~~l~lsn--------------n~~~~fp~~it~l~~L~~ln~s~-n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~ 108 (1081)
T KOG0618|consen 46 KLKSLDLSN--------------NQISSFPIQITLLSHLRQLNLSR-NYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA 108 (1081)
T ss_pred eeEEeeccc--------------cccccCCchhhhHHHHhhcccch-hhHh-hCchhhhhhhcchhheeccchhh-cCch
Confidence 356777775 44556677788888888888873 4433 56777778888888888888887 7888
Q ss_pred hccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCC
Q 017578 153 DIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRL 232 (369)
Q Consensus 153 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 232 (369)
.+..+.+|++|+++.|.+. .+|..+..+..++.+..++|.-.. .++... ++.+++..|.+.+.++..+..++.
T Consensus 109 ~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~- 181 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH- 181 (1081)
T ss_pred hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhhe-
Confidence 8888888888888888877 777777666666666666661111 111111 555555555555555555544444
Q ss_pred CEEEeecCCcccccchhhhC--------------------CCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCccc
Q 017578 233 ADLDLSMNQISGMIPASLGK--------------------MAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGK 292 (369)
Q Consensus 233 ~~L~l~~n~l~~~~~~~l~~--------------------l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 292 (369)
.|++.+|.+.. ..+.. -++|+.|+.+.|.++ ..-......+++++++++|+++ .
T Consensus 182 -~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~ 255 (1081)
T KOG0618|consen 182 -QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-N 255 (1081)
T ss_pred -eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-eeccccccccceeeecchhhhh-c
Confidence 45555555541 11122 245666666666665 2222233388999999999999 6
Q ss_pred CCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCc
Q 017578 293 IPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
+|+|++.+.+|+.++..+|+++ .+|..+....+|+.|++.+|.+.-..|...++..|++|++..|...
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 6699999999999999999996 8888888999999999999999855555666889999999887643
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=3.4e-16 Score=154.79 Aligned_cols=153 Identities=29% Similarity=0.549 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC---CccceEeCCC--C--CcEEEEEcCCCCCchhhhhccCCCcc
Q 017578 25 NCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCH---NWYGVSCDQE--T--HRVADINLRGESEDPIFQRAHRTGYM 97 (369)
Q Consensus 25 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~W~~~~~c~---~w~gv~C~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~~ 97 (369)
....+.|.+||+++|+++..+. ..+|.+++|+. .|.||.|... . .+|+.|+|++ +.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~---~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------n~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL---RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------QGL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc---cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC-------------CCc
Confidence 3567789999999999986532 23798765531 4999999532 2 2589999998 788
Q ss_pred eeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcc
Q 017578 98 TGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPS 177 (369)
Q Consensus 98 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~ 177 (369)
.|.+|+.+.++++|+.|+|++ +.+.|.+|..++.+++|+.|+|++|.+++.+|..++++++|++|+|++|.++|.+|..
T Consensus 431 ~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 431 RGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred cccCCHHHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 889999999999999999985 8888888888889999999999999999888988899999999999999998888888
Q ss_pred ccCC-CCCcEEEcccCcc
Q 017578 178 IANL-SSLMHLDLRNNRI 194 (369)
Q Consensus 178 l~~l-~~L~~L~l~~n~l 194 (369)
+... .++..+++.+|..
T Consensus 510 l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred HhhccccCceEEecCCcc
Confidence 7653 4667777777753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=3.4e-18 Score=151.31 Aligned_cols=251 Identities=19% Similarity=0.183 Sum_probs=158.2
Q ss_pred CEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeec-CcCCCcCCccccCCCCCcEEEcc
Q 017578 112 SSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIAD-NNISGAIPPSIANLSSLMHLDLR 190 (369)
Q Consensus 112 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~ 190 (369)
..|+|.. |.++...+..|+.+++|+.|||++|.|+..-|+.|.+++.|..|-+.+ |+|+......|.++..|+.|.+.
T Consensus 70 veirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 4556663 666655556677777777777777777766667777777766666555 66663333456667777777777
Q ss_pred cCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCccc------------ccchhhhCCCCCcE
Q 017578 191 NNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISG------------MIPASLGKMAVLAT 258 (369)
Q Consensus 191 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~l~~L~~ 258 (369)
-|++.-.....|..++++..|.+.+|.+...--.++..+..++.+.+..|.+.. ..|..++..+-...
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 666665555666677777777777776663333366666666666666665321 12223333333344
Q ss_pred EeccCCcCcCCCCcccccCCCCEE----EcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEccc
Q 017578 259 LNLDFNKLSGPIPASLMNSGISNL----NLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334 (369)
Q Consensus 259 L~L~~n~l~~~~~~~~~~~~L~~L----~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~ 334 (369)
..+.+.++...-+..+.. .++.+ .-..+.........|..+++|++|++++|++++.-+.+|.....++.|.|..
T Consensus 229 ~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 444444443222222221 11211 1111122212234688999999999999999999999999999999999999
Q ss_pred CcCceeCCC--CCCCCCccccccccCCCcccCC
Q 017578 335 NYLCGRIPD--GSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 335 N~l~g~ip~--~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
|++. .+.. ...+.+|++|++.+|...|-.|
T Consensus 308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred chHH-HHHHHhhhccccceeeeecCCeeEEEec
Confidence 9985 3333 2356788999999999888654
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=3.3e-13 Score=133.70 Aligned_cols=114 Identities=36% Similarity=0.640 Sum_probs=103.8
Q ss_pred CcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEccc
Q 017578 256 LATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334 (369)
Q Consensus 256 L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~ 334 (369)
++.|+|++|.+.+.+|..+.. ++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 788999999999999998887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCceeCCCCC--CCCCccccccccCCCcccCC-CCCC
Q 017578 335 NYLCGRIPDGS--PFDHLEASSFAYNKCLCGKP-LRAC 369 (369)
Q Consensus 335 N~l~g~ip~~~--~~~~L~~l~l~~N~~~c~~~-l~~~ 369 (369)
|+++|.+|... .+.++..+++.+|+.+|+.| ++.|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999732 23466788999999999985 5666
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=6.5e-15 Score=136.28 Aligned_cols=196 Identities=28% Similarity=0.431 Sum_probs=167.1
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEE
Q 017578 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRA 211 (369)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 211 (369)
.+..-...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..+.++..|++++++.|.++ .+|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3455567889999998 89998888889999999999988 88999999999999999999998 7788888776 8999
Q ss_pred EcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcc
Q 017578 212 LLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEG 291 (369)
Q Consensus 212 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 291 (369)
.+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..-.|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-
Confidence 99999998 78888998899999999999997 67888999999999999999987 5676666777999999999999
Q ss_pred cCCcccCCCCCCCEEEeeCCcccccchhhcc---CCCCCCEEEcccCc
Q 017578 292 KIPDVFGPRSYFTAIDLAYNKLSGSIPRTLS---AASYIGHLDFSHNY 336 (369)
Q Consensus 292 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~ls~N~ 336 (369)
.+|..|..|..|++|-|.+|.+. ..|..++ ...=.++|+..-++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88999999999999999999998 5555543 23335677777774
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=5.1e-13 Score=126.21 Aligned_cols=195 Identities=35% Similarity=0.513 Sum_probs=92.9
Q ss_pred EEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCC-CCcEEEcccCccCCCCCCcccCCCCCCEEEcccc
Q 017578 138 ILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLS-SLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRN 216 (369)
Q Consensus 138 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 216 (369)
.+++..+.+. .....+..++.++.|++.+|.++ .++....... +|++|++++|.+. .+|..+..+++|+.|++.+|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3444444442 11222333444555555555555 4444444442 5555555555554 33334455555555555555
Q ss_pred cCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCc
Q 017578 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPD 295 (369)
Q Consensus 217 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~ 295 (369)
+++ .++...+..+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+.. .++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 555 33333334455555555555554 34444334444555555555322 12222222 44455555555554 2244
Q ss_pred ccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeC
Q 017578 296 VFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRI 341 (369)
Q Consensus 296 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 341 (369)
.+..++.++.|++++|.++ .++. +..+.+++.|++++|.++..+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 4555555555555555555 2222 555555555666555554333
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2e-12 Score=122.08 Aligned_cols=193 Identities=28% Similarity=0.440 Sum_probs=160.5
Q ss_pred CEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCC-CCCEEEcccccCCccCCchhcCCCCCCEEEeec
Q 017578 161 AVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLR-MMSRALLSRNQISGTIPSSISMIYRLADLDLSM 239 (369)
Q Consensus 161 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 239 (369)
..+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 46788888775 33344566688999999999998 6666677774 9999999999998 6667889999999999999
Q ss_pred CCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccch
Q 017578 240 NQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIP 318 (369)
Q Consensus 240 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 318 (369)
|+++ .+|...+..+.|+.|++++|+++ .+|..... ..|+++.+++|... ..+..+..+.++..+.+.+|++. .++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 9998 56666668899999999999998 66766534 66999999999654 56667888999999999999987 447
Q ss_pred hhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCc
Q 017578 319 RTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 319 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
..+..+++++.|++++|+++ .++....+.+++.+++++|...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 78889999999999999998 6666778899999999998654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=8.7e-14 Score=121.91 Aligned_cols=227 Identities=19% Similarity=0.255 Sum_probs=146.2
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCccee----ecCccccCCCCCCEEecCCCCCCccc----cCc-------cCCCCCCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTG----YISPAVCKLTRLSSLTLADWKGITGE----IPR-------CISSIPFL 136 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~----~p~-------~~~~l~~L 136 (369)
..++.|+|+| |.+.. .+.+.+.+.+.|+.-++++ -++|. +|+ .+..+++|
T Consensus 30 ~s~~~l~lsg-------------nt~G~EAa~~i~~~L~~~~~L~~v~~sd--~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 30 DSLTKLDLSG-------------NTFGTEAARAIAKVLASKKELREVNLSD--MFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred CceEEEeccC-------------CchhHHHHHHHHHHHhhcccceeeehHh--hhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 3688999999 55443 2455677788899888883 44443 333 34466789
Q ss_pred CEEEcCCCcCcccCChh----ccCCCCCCEEEeecCcCCCcCC-------------ccccCCCCCcEEEcccCccCCC--
Q 017578 137 RILDLIGNKLSGDIPRD----IGRLHRLAVLNIADNNISGAIP-------------PSIANLSSLMHLDLRNNRISGP-- 197 (369)
Q Consensus 137 ~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~~~~~~~-------------~~l~~l~~L~~L~l~~n~l~~~-- 197 (369)
++||||.|.+....+.. +..+..|++|.|.+|.+...-. .-.++-+.|+++...+|++...
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 99999999887444433 4567889999998887751111 1123446788888888876532
Q ss_pred --CCCcccCCCCCCEEEcccccCCc----cCCchhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCc
Q 017578 198 --IPGSVGRLRMMSRALLSRNQISG----TIPSSISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 198 --~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 267 (369)
+...+...+.|+.+.+..|.+.. .+..++..+++|++||+.+|.++.. +...+..+++|++|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 22335566778888887777642 2234567777888888888877643 3345556777888888887776
Q ss_pred CCCCccccc------CCCCEEEcccCcCccc----CCcccCCCCCCCEEEeeCCcc
Q 017578 268 GPIPASLMN------SGISNLNLSRNMLEGK----IPDVFGPRSYFTAIDLAYNKL 313 (369)
Q Consensus 268 ~~~~~~~~~------~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l 313 (369)
......+.. +.|+.|.+.+|.++.. +...+...+.|+.|+|++|++
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 555443332 6777777777777531 222334456677777777777
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.8e-13 Score=126.93 Aligned_cols=178 Identities=26% Similarity=0.415 Sum_probs=156.4
Q ss_pred CCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEE
Q 017578 156 RLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADL 235 (369)
Q Consensus 156 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 235 (369)
.+.--...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3445567899999998 89999999999999999999987 78899999999999999999998 7888888775 9999
Q ss_pred EeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccc
Q 017578 236 DLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 236 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 314 (369)
-+++|+++ .+|+.++....|..|+.+.|.+. .+|..+.. .+|+.|.+..|++. .+|..+..+ .|..||++.|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 99999998 68999999999999999999997 56666555 89999999999998 667777754 5889999999999
Q ss_pred ccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 315 GSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 315 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
.+|..|.+++.|++|-|.+|.++ ..|+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 99999999999999999999998 4554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=3.8e-12 Score=109.66 Aligned_cols=128 Identities=24% Similarity=0.211 Sum_probs=69.7
Q ss_pred cCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCE
Q 017578 227 SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTA 305 (369)
Q Consensus 227 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 305 (369)
..++.|+++|+++|.++ .+.++..-.++++.|++++|.+.... . +.. ++|+.|||++|.++ .+..|-..+-+++.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-N-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-h-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 33455666666666655 44555555566666666666655221 1 222 56666666666665 33334444555666
Q ss_pred EEeeCCcccccchhhccCCCCCCEEEcccCcCce--eCCCCCCCCCccccccccCCC
Q 017578 306 IDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCG--RIPDGSPFDHLEASSFAYNKC 360 (369)
Q Consensus 306 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~~~~~~L~~l~l~~N~~ 360 (369)
|.|++|.+. ....+.++-+|..||+++|+|.. .+..++.+|-|+.+.+.+||.
T Consensus 357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 666666653 22344555566666666666542 233344556666666666664
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2e-12 Score=116.54 Aligned_cols=208 Identities=22% Similarity=0.225 Sum_probs=125.3
Q ss_pred CCCCCCCEEEcCCCcCcccCC--hhccCCCCCCEEEeecCcCCC--cCCccccCCCCCcEEEcccCccCCCCCC-cccCC
Q 017578 131 SSIPFLRILDLIGNKLSGDIP--RDIGRLHRLAVLNIADNNISG--AIPPSIANLSSLMHLDLRNNRISGPIPG-SVGRL 205 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l 205 (369)
.++.+|+.+.|.++.+. ..+ .....+++++.|||++|-+.. .+-+....+++|+.|+++.|++.-.... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778888888888776 333 245678888888888887652 2223345778888888888887522111 12256
Q ss_pred CCCCEEEcccccCCcc-CCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCC-ccccc-CCCCEE
Q 017578 206 RMMSRALLSRNQISGT-IPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIP-ASLMN-SGISNL 282 (369)
Q Consensus 206 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L 282 (369)
++|+.|.++.|+++.. +...+..+++|+.|++..|............++.|++|+|++|++..... ..... +.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7778888888877632 22233556777778877774222223333455677778887777653321 11222 777777
Q ss_pred EcccCcCccc-CCcc-----cCCCCCCCEEEeeCCcccc-cchhhccCCCCCCEEEcccCcCce
Q 017578 283 NLSRNMLEGK-IPDV-----FGPRSYFTAIDLAYNKLSG-SIPRTLSAASYIGHLDFSHNYLCG 339 (369)
Q Consensus 283 ~L~~n~l~~~-~~~~-----~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~g 339 (369)
+++.+.++.. .|+. ....++|++|++..|++.+ ..-..+..+++|+.|.+-.|+++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7777776532 2222 2455677777777777742 111234455666666666776653
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=1.8e-12 Score=113.81 Aligned_cols=236 Identities=19% Similarity=0.256 Sum_probs=153.3
Q ss_pred cCccccCCCCCCEEecCCCCCCccc----cCccCCCCCCCCEEEcCCCc---CcccCCh-------hccCCCCCCEEEee
Q 017578 101 ISPAVCKLTRLSSLTLADWKGITGE----IPRCISSIPFLRILDLIGNK---LSGDIPR-------DIGRLHRLAVLNIA 166 (369)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~L~~n~---l~~~~p~-------~~~~l~~L~~L~L~ 166 (369)
+-+.+..+..++.+++++ +.+... +...+.+.+.|+..++++-. ....+|. .+...++|++|+|+
T Consensus 22 v~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 345566778889999996 555432 34556677888888887542 2223443 33456789999999
Q ss_pred cCcCCCcCCcc----ccCCCCCcEEEcccCccCCC-------------CCCcccCCCCCCEEEcccccCCcc----CCch
Q 017578 167 DNNISGAIPPS----IANLSSLMHLDLRNNRISGP-------------IPGSVGRLRMMSRALLSRNQISGT----IPSS 225 (369)
Q Consensus 167 ~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~~~~~----~~~~ 225 (369)
.|-+.-..++. +.++..|++|.|.+|.+... ......+-++|+++....|++... +...
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 99876444433 45678889999988877521 112234557788888888877542 2344
Q ss_pred hcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCCccccc-----CCCCEEEcccCcCcccCCcc
Q 017578 226 ISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIPASLMN-----SGISNLNLSRNMLEGKIPDV 296 (369)
Q Consensus 226 l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~ 296 (369)
+...+.|+.+.+..|.+... +...+..+++|+.|+|++|.|+......++. ++|+.|++++|.+......+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 56667788888888877422 3345667888888888888876543322222 66788888888776544333
Q ss_pred c-----CCCCCCCEEEeeCCccccc----chhhccCCCCCCEEEcccCcC
Q 017578 297 F-----GPRSYFTAIDLAYNKLSGS----IPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 297 ~-----~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l 337 (369)
+ ...++|++|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 2357788888888877642 333445567777788888777
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.3e-12 Score=116.13 Aligned_cols=185 Identities=22% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCCCCCCEEEcCCCcCccc--CChhccCCCCCCEEEeecCcCCCcCCcc-ccCCCCCcEEEcccCccCCC-CCCcccCC
Q 017578 130 ISSIPFLRILDLIGNKLSGD--IPRDIGRLHRLAVLNIADNNISGAIPPS-IANLSSLMHLDLRNNRISGP-IPGSVGRL 205 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~-~~~~l~~l 205 (369)
...+++++.|||+.|-+..- +-.....+|+|+.|+++.|++.-...+. -..+++|+.|.++.|.++.. +...+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 34455555555555544311 1122234555555555555543111110 11334555555555554411 11123344
Q ss_pred CCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCccccc-chhhhCCCCCcEEeccCCcCcCCC-Ccc------cccC
Q 017578 206 RMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMI-PASLGKMAVLATLNLDFNKLSGPI-PAS------LMNS 277 (369)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~------~~~~ 277 (369)
|+|+.|++..|............++.|+.|+|++|.+.... -...+.++.|+.|+++.+.+...- |+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 55555555555322222222233445555555555544211 023344555555555555544221 111 0005
Q ss_pred CCCEEEcccCcCccc-CCcccCCCCCCCEEEeeCCccc
Q 017578 278 GISNLNLSRNMLEGK-IPDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 278 ~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~ 314 (369)
+|++|++..|++.+. .-..+..+++|+.|.+..|.++
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 555555555555311 1122333444444555455444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=7.7e-12 Score=107.80 Aligned_cols=127 Identities=29% Similarity=0.329 Sum_probs=62.9
Q ss_pred CCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEec
Q 017578 182 SSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNL 261 (369)
Q Consensus 182 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 261 (369)
+.|+++|+++|.++ .+..+..-.|+++.|++++|++... ..+..+++|+.||+++|.++ .+..+-..+.++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 45666666666655 4444555556666666666665421 22555556666666666554 23333334555555566
Q ss_pred cCCcCcCCCCccccc-CCCCEEEcccCcCccc-CCcccCCCCCCCEEEeeCCccc
Q 017578 262 DFNKLSGPIPASLMN-SGISNLNLSRNMLEGK-IPDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 262 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~ 314 (369)
++|.+.. +. .+.. -+|..||+++|++... -...++++|.|+.+.|.+|.+.
T Consensus 360 a~N~iE~-LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET-LS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh-hh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555431 11 1111 3455555555555421 1223445555555555555544
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=4.7e-11 Score=121.25 Aligned_cols=128 Identities=28% Similarity=0.452 Sum_probs=88.3
Q ss_pred CCCCCEEecCCCCC--CccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCc
Q 017578 108 LTRLSSLTLADWKG--ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLM 185 (369)
Q Consensus 108 l~~L~~L~l~~~~~--~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 185 (369)
++.|++|-+.+ +. +......+|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus 544 ~~~L~tLll~~-n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQR-NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEee-cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 44677777764 32 33333445777888888888887666688888888888888888888887 8888888888888
Q ss_pred EEEcccCccCCCCCCcccCCCCCCEEEcccccCC--ccCCchhcCCCCCCEEEe
Q 017578 186 HLDLRNNRISGPIPGSVGRLRMMSRALLSRNQIS--GTIPSSISMIYRLADLDL 237 (369)
Q Consensus 186 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l 237 (369)
+|++..+.....+|.....+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888877755555666667888888888765421 122233344444444444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.4e-10 Score=95.33 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=4.7
Q ss_pred cCCCCCCEEEeecCCc
Q 017578 227 SMIYRLADLDLSMNQI 242 (369)
Q Consensus 227 ~~l~~L~~L~l~~n~l 242 (369)
..+++|+.|++.+|.+
T Consensus 110 ~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp GG-TT--EEE-TT-GG
T ss_pred HcCCCcceeeccCCcc
Confidence 3344444444444444
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.6e-10 Score=92.85 Aligned_cols=108 Identities=31% Similarity=0.392 Sum_probs=30.0
Q ss_pred CCCCCCEEEeecCcCCCcCCcccc-CCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchh-cCCCCCC
Q 017578 156 RLHRLAVLNIADNNISGAIPPSIA-NLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSI-SMIYRLA 233 (369)
Q Consensus 156 ~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 233 (369)
+..++++|+|++|.++ .+ +.++ .+.+|+.|++++|.+.. + ..+..+++|++|++++|+++. +.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 3344555666666555 22 2333 34556666666666552 2 235555666666666666653 33333 3456666
Q ss_pred EEEeecCCcccc-cchhhhCCCCCcEEeccCCcCcC
Q 017578 234 DLDLSMNQISGM-IPASLGKMAVLATLNLDFNKLSG 268 (369)
Q Consensus 234 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 268 (369)
+|++++|++... --..+..+++|+.|++.+|.++.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 666666666431 12345567777777777777663
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=5.3e-11 Score=112.91 Aligned_cols=241 Identities=26% Similarity=0.271 Sum_probs=153.2
Q ss_pred CCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcE
Q 017578 107 KLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMH 186 (369)
Q Consensus 107 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 186 (369)
.+..++.+.+.. +.+. .+-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~-n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccch-hhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 455556666552 3333 22334667788888888888887 4444466788888888888888732 23556677888
Q ss_pred EEcccCccCCCCCCcccCCCCCCEEEcccccCCccCC-chhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCc
Q 017578 187 LDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIP-SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNK 265 (369)
Q Consensus 187 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 265 (369)
|++++|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 88888887632 345567888888888888774433 2 4667778888888887752 3344455555666777777
Q ss_pred CcCCCCcccccC--CCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCcee---
Q 017578 266 LSGPIPASLMNS--GISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGR--- 340 (369)
Q Consensus 266 l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~--- 340 (369)
++..-+. .... .|+.+++++|.+. ..+..+..+..+..+++.+|++... ..+...+.+..+....|.+...
T Consensus 220 i~~~~~l-~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 220 ISKLEGL-NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred ceeccCc-ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 6632221 1112 2788888888887 3335566777888888888887632 2234445566666777765421
Q ss_pred CCC--CCCCCCccccccccCCCc
Q 017578 341 IPD--GSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 341 ip~--~~~~~~L~~l~l~~N~~~ 361 (369)
... ....+.++...+.+||..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred hccccccccccccccccccCccc
Confidence 111 345567777777777653
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=8.6e-11 Score=111.50 Aligned_cols=225 Identities=29% Similarity=0.284 Sum_probs=110.4
Q ss_pred cccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCC
Q 017578 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 183 (369)
.+..++.|+.|++.+ +.+... ...+..+++|++|++++|.|+.. . .+..++.|+.|++.+|.++ .+ ..+..+..
T Consensus 90 ~l~~~~~l~~l~l~~-n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~ 163 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYD-NKIEKI-ENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNLSGNLIS-DI-SGLESLKS 163 (414)
T ss_pred ccccccceeeeeccc-cchhhc-ccchhhhhcchheeccccccccc-c-chhhccchhhheeccCcch-hc-cCCccchh
Confidence 355566666666663 444422 22245566666666666666522 1 3445555666666666665 22 23334566
Q ss_pred CcEEEcccCccCCCCC-CcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCC--CCcEEe
Q 017578 184 LMHLDLRNNRISGPIP-GSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMA--VLATLN 260 (369)
Q Consensus 184 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~ 260 (369)
|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.++..- .+..+. .|+.++
T Consensus 164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~ 238 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELY 238 (414)
T ss_pred hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHh
Confidence 6666666666653322 1 3555666666666666542 222333334444455555554221 112222 256666
Q ss_pred ccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc---chhh-ccCCCCCCEEEcccC
Q 017578 261 LDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS---IPRT-LSAASYIGHLDFSHN 335 (369)
Q Consensus 261 L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~p~~-l~~l~~L~~L~ls~N 335 (369)
+.+|.+.. .+..+.. ..+..+++.+|++...- .+.....+..+....|.+... .... ....+.++.+.+.+|
T Consensus 239 l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 239 LSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred cccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 66666552 2111111 55666666666654221 123334444455555554321 1111 334455666666666
Q ss_pred cCceeCC
Q 017578 336 YLCGRIP 342 (369)
Q Consensus 336 ~l~g~ip 342 (369)
.+....+
T Consensus 316 ~~~~~~~ 322 (414)
T KOG0531|consen 316 PIRKISS 322 (414)
T ss_pred ccccccc
Confidence 5554433
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=1e-09 Score=111.72 Aligned_cols=109 Identities=25% Similarity=0.354 Sum_probs=85.4
Q ss_pred ccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCC
Q 017578 103 PAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLS 182 (369)
Q Consensus 103 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 182 (369)
..+..++.|+.||+++ +.-.+.+|..++++-+||+|++++..+. .+|..++++..|.+|++..+.....+|.....++
T Consensus 565 ~ff~~m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HHHhhCcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 3477899999999996 5555689999999999999999999999 8999999999999999999876656666667799
Q ss_pred CCcEEEcccCccC--CCCCCcccCCCCCCEEEc
Q 017578 183 SLMHLDLRNNRIS--GPIPGSVGRLRMMSRALL 213 (369)
Q Consensus 183 ~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l 213 (369)
+|++|.+...... ...-..+..+.+|+.+..
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999998765422 122233444555555544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.3e-09 Score=73.67 Aligned_cols=61 Identities=31% Similarity=0.451 Sum_probs=51.1
Q ss_pred CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 277 SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 277 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
++|++|++++|+++...+.+|..+++|++|++++|++....+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877677888888899999998888877777888888899998888875
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.81 E-value=6.7e-09 Score=64.51 Aligned_cols=40 Identities=48% Similarity=1.013 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCC-C--CCCCCCccceEeC
Q 017578 28 PPSERAALLAFKAALHEPYLGIFNSWT-G--NDCCHNWYGVSCD 68 (369)
Q Consensus 28 ~~~~~~~ll~~~~~~~~~~~~~~~~W~-~--~~~c~~w~gv~C~ 68 (369)
+++|++||++||+++..++...+.+|+ . .+||. |.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~-W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS-WSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC-STTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCee-eccEEeC
Confidence 368999999999999976677899998 3 68897 9999996
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.81 E-value=1.7e-10 Score=110.17 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=132.1
Q ss_pred CCCCCEEEeecCcCCCcC-CccccCCCCCcEEEcccCccCCCCCCcccCC-CCCCEEEcccccCC----------ccCCc
Q 017578 157 LHRLAVLNIADNNISGAI-PPSIANLSSLMHLDLRNNRISGPIPGSVGRL-RMMSRALLSRNQIS----------GTIPS 224 (369)
Q Consensus 157 l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~~ 224 (369)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.++++.+.. ...+..+ .+|++|. .+|.++ |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhcccccc
Confidence 344444444333222222 5567788999999999998763 1222222 1233332 122111 11111
Q ss_pred hhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcc-cCCCCC
Q 017578 225 SISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDV-FGPRSY 302 (369)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~-~~~~~~ 302 (369)
++ .+..|.+.+++.|.+. .+-.++.-++.|+.|+|++|+++... .+.. ++|++|||+.|.+. .+|.. ...+ .
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-K 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-h
Confidence 11 1345778888999887 56678888899999999999998543 3333 89999999999998 44442 3334 4
Q ss_pred CCEEEeeCCcccccchhhccCCCCCCEEEcccCcCce--eCCCCCCCCCccccccccCCCcccCC
Q 017578 303 FTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCG--RIPDGSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 303 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
|+.|.+++|.++ . -..+.++++|+.|||++|-+.+ ++-....+-.|..|.+.|||..|.+-
T Consensus 234 L~~L~lrnN~l~-t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-T-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred heeeeecccHHH-h-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 999999999987 2 2457799999999999998875 33334456788899999999999764
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.8e-09 Score=71.39 Aligned_cols=59 Identities=37% Similarity=0.530 Sum_probs=27.3
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR 193 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 193 (369)
+|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44455555555543222344445555555555554443333344444455555544443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=8.2e-09 Score=88.14 Aligned_cols=226 Identities=18% Similarity=0.208 Sum_probs=148.2
Q ss_pred cEEEEEcCCCCCchhhhhccCCCcceeecC----ccccCCCCCCEEecCCCCCCccc----cC-------ccCCCCCCCC
Q 017578 73 RVADINLRGESEDPIFQRAHRTGYMTGYIS----PAVCKLTRLSSLTLADWKGITGE----IP-------RCISSIPFLR 137 (369)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~----~p-------~~~~~l~~L~ 137 (369)
.++.+||+| |.+..... ..+.+-.+|+..++++ .++|. ++ ..+-++|+|+
T Consensus 31 ~~~evdLSG-------------NtigtEA~e~l~~~ia~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 31 ELVEVDLSG-------------NTIGTEAMEELCNVIANVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred ceeEEeccC-------------CcccHHHHHHHHHHHhhhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 678999999 55554433 3455667788888773 33333 22 3456789999
Q ss_pred EEEcCCCcCcccCChh----ccCCCCCCEEEeecCcCCC----cCCcc---------ccCCCCCcEEEcccCccCCCCCC
Q 017578 138 ILDLIGNKLSGDIPRD----IGRLHRLAVLNIADNNISG----AIPPS---------IANLSSLMHLDLRNNRISGPIPG 200 (369)
Q Consensus 138 ~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~~~~----~~~~~---------l~~l~~L~~L~l~~n~l~~~~~~ 200 (369)
.++||.|.+....|.. +++-+.|.+|.+++|.+.. .+..+ ..+-+.|+++....|++.. .+.
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~ 174 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSK 174 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcH
Confidence 9999999988666643 4667889999999987641 11111 2244789999999888762 221
Q ss_pred -----cccCCCCCCEEEcccccCCcc-----CCchhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcC
Q 017578 201 -----SVGRLRMMSRALLSRNQISGT-----IPSSISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKL 266 (369)
Q Consensus 201 -----~l~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 266 (369)
.+..-.+|+++.+..|.+... .-..+..+++|++||+.+|.++-. +...+..++.|++|.+.+|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 233446788888888877632 112345678899999999988743 334555677889999998888
Q ss_pred cCCCCccccc-------CCCCEEEcccCcCcccCCcc-------cCCCCCCCEEEeeCCccc
Q 017578 267 SGPIPASLMN-------SGISNLNLSRNMLEGKIPDV-------FGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 267 ~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~-------~~~~~~L~~L~L~~n~l~ 314 (369)
+......+.. ++|..|-..+|...+.+... -..++-|..|.+.+|++.
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 7655443322 77788888777765432211 134556666666777665
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.1e-09 Score=94.54 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCCEEEcCCCcCccc-CChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccC
Q 017578 135 FLRILDLIGNKLSGD-IPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN 192 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 192 (369)
.|++|||+...++.. +-..+..+.+|+.|.+.++++...+...++...+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 355555555555411 1122344555555555555555555455555555555555544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.9e-08 Score=85.12 Aligned_cols=200 Identities=19% Similarity=0.140 Sum_probs=109.9
Q ss_pred CCCCCCEEEcCCCcCcc--cCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCC-CCCCcccCCCCC
Q 017578 132 SIPFLRILDLIGNKLSG--DIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISG-PIPGSVGRLRMM 208 (369)
Q Consensus 132 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L 208 (369)
..+.++.+||.+|.++. .+...+.++|+|+.|+++.|.+...+...-....+|++|.|.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45778888888888872 233345678888888888888773332222456788888888777642 233456677788
Q ss_pred CEEEcccccCCccC--CchhcCC-CCCCEEEeecCCccc--ccchhhhCCCCCcEEeccCCcCcCCCCccccc--CCCCE
Q 017578 209 SRALLSRNQISGTI--PSSISMI-YRLADLDLSMNQISG--MIPASLGKMAVLATLNLDFNKLSGPIPASLMN--SGISN 281 (369)
Q Consensus 209 ~~L~l~~n~~~~~~--~~~l~~l-~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~ 281 (369)
++|+++.|.+.... ....... +.+++|.+..|...- ..-.--..++++..+-+..|.+.......-.. +.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 88888777443110 0111111 234444444432210 00011123456666666666554332221111 55566
Q ss_pred EEcccCcCcccC-CcccCCCCCCCEEEeeCCcccccchh------hccCCCCCCEEE
Q 017578 282 LNLSRNMLEGKI-PDVFGPRSYFTAIDLAYNKLSGSIPR------TLSAASYIGHLD 331 (369)
Q Consensus 282 L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~ 331 (369)
|+|+.|++.... .+.+..++.|..|.++++.+.+.+.. .++.+++++.|+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 677777665322 24456667777777777766543321 245556666554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.6e-09 Score=93.64 Aligned_cols=175 Identities=22% Similarity=0.234 Sum_probs=121.3
Q ss_pred CCCcEEEcccCccCCC-CCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCC-cccc-cchhhhCCCCCcE
Q 017578 182 SSLMHLDLRNNRISGP-IPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQ-ISGM-IPASLGKMAVLAT 258 (369)
Q Consensus 182 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~ 258 (369)
+.|++|||++..++.. +-..+..+.+|+.|.+.++++++.+...+..-.+|+.|+++.+. ++.. ..--+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4588899988877632 22345677889999999999998888888888999999998753 3322 2234567888999
Q ss_pred EeccCCcCcCCCCcc-ccc--CCCCEEEcccCcCc---ccCCcccCCCCCCCEEEeeCCc-ccccchhhccCCCCCCEEE
Q 017578 259 LNLDFNKLSGPIPAS-LMN--SGISNLNLSRNMLE---GKIPDVFGPRSYFTAIDLAYNK-LSGSIPRTLSAASYIGHLD 331 (369)
Q Consensus 259 L~L~~n~l~~~~~~~-~~~--~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ 331 (369)
|+++.|.+..+.-.. +.. ++++.|+++++.-. ..+..-...+++|..|||++|. ++......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999998776443222 222 78889999886421 1222223568899999998775 5556667788889999999
Q ss_pred cccCcCceeCCC----CCCCCCccccccccC
Q 017578 332 FSHNYLCGRIPD----GSPFDHLEASSFAYN 358 (369)
Q Consensus 332 ls~N~l~g~ip~----~~~~~~L~~l~l~~N 358 (369)
++.|+. .+|. ....|.|.+|++.|.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 988864 3333 345677777776553
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=5.3e-09 Score=100.30 Aligned_cols=178 Identities=26% Similarity=0.331 Sum_probs=125.9
Q ss_pred ChhccCCCCCCEEEeecCcCCCcCCccccCC-CCCcEEEcccCccC----------CCCCCcccCCCCCCEEEcccccCC
Q 017578 151 PRDIGRLHRLAVLNIADNNISGAIPPSIANL-SSLMHLDLRNNRIS----------GPIPGSVGRLRMMSRALLSRNQIS 219 (369)
Q Consensus 151 p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~----------~~~~~~l~~l~~L~~L~l~~n~~~ 219 (369)
|-.+..+..|+.|.++++++.. ...+..+ ..|++|... |.++ |.+..++ .+.+|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 5567788999999999998862 1122111 234444322 2211 1111111 2346888888899887
Q ss_pred ccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccC
Q 017578 220 GTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFG 298 (369)
Q Consensus 220 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~ 298 (369)
.+..++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.++ .+|..-.. .+|..|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHH
Confidence 6677888889999999999999844 47888999999999999997 45543322 6799999999999732 2367
Q ss_pred CCCCCCEEEeeCCcccccc-hhhccCCCCCCEEEcccCcCc
Q 017578 299 PRSYFTAIDLAYNKLSGSI-PRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~ 338 (369)
++.+|+.||++.|-+.+.- -..++.+..|+.|.|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8899999999999887632 223456678888999999774
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=1.2e-07 Score=81.16 Aligned_cols=243 Identities=17% Similarity=0.186 Sum_probs=109.1
Q ss_pred ccCCCCCCEEecCCCCCCccc----cCccCCCCCCCCEEEcCCCcCc---ccCC-------hhccCCCCCCEEEeecCcC
Q 017578 105 VCKLTRLSSLTLADWKGITGE----IPRCISSIPFLRILDLIGNKLS---GDIP-------RDIGRLHRLAVLNIADNNI 170 (369)
Q Consensus 105 l~~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~L~~n~~ 170 (369)
+..+..+..++||+ |.+... +...+.+-++|+..+++.-... ..++ ..+.++|+|+..+|+.|.+
T Consensus 26 l~~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 33456666667765 443322 2333445556666666543211 1122 1234556666666666665
Q ss_pred CCcCCcc----ccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCccccc
Q 017578 171 SGAIPPS----IANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMI 246 (369)
Q Consensus 171 ~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 246 (369)
....|+. +++-+.|++|.+++|.+...--.-+++ .|.+| ..| .....-+.|+++....|++.. .
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlen-g 172 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLEN-G 172 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhcc-C
Confidence 5444433 234455556666555543110000000 00000 000 001223455666666665542 1
Q ss_pred ch-----hhhCCCCCcEEeccCCcCcCCCCccc------ccCCCCEEEcccCcCccc----CCcccCCCCCCCEEEeeCC
Q 017578 247 PA-----SLGKMAVLATLNLDFNKLSGPIPASL------MNSGISNLNLSRNMLEGK----IPDVFGPRSYFTAIDLAYN 311 (369)
Q Consensus 247 ~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n 311 (369)
+. .+..-..|+++.+..|.|....-..+ ...+|+.||++.|.++-. +...+...+.|+.|.+..|
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 11 12222456666666665542211111 115666666666666421 2233344455666666666
Q ss_pred cccccchhh----c--cCCCCCCEEEcccCcCceeCCC--------CCCCCCccccccccCCC
Q 017578 312 KLSGSIPRT----L--SAASYIGHLDFSHNYLCGRIPD--------GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 312 ~l~~~~p~~----l--~~l~~L~~L~ls~N~l~g~ip~--------~~~~~~L~~l~l~~N~~ 360 (369)
-++..-... + ...|+|..|...+|.+.|.+-. ...+|-|..+.+.||.+
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 655332222 1 1235666666667765543221 11344555555666654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.2e-07 Score=82.21 Aligned_cols=212 Identities=18% Similarity=0.181 Sum_probs=132.7
Q ss_pred CCCCCCCEEEcCCCcCcccC-Chhc-cCCCCCCEEEeecCcCCC--cCCccccCCCCCcEEEcccCccCCCCCCcccCCC
Q 017578 131 SSIPFLRILDLIGNKLSGDI-PRDI-GRLHRLAVLNIADNNISG--AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLR 206 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~-p~~~-~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 206 (369)
.....++.+.+.++.|...- ...| ...+.++.+||..|.++. .+...+.+++.|++|+++.|.+...+...-..+.
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 33445667777777765221 1223 356889999999999873 3344467899999999999998744333224667
Q ss_pred CCCEEEcccccCCcc-CCchhcCCCCCCEEEeecCCccccc--chhhhCC-CCCcEEeccCCcCcCCCC-ccccc--CCC
Q 017578 207 MMSRALLSRNQISGT-IPSSISMIYRLADLDLSMNQISGMI--PASLGKM-AVLATLNLDFNKLSGPIP-ASLMN--SGI 279 (369)
Q Consensus 207 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l-~~L~~L~L~~n~l~~~~~-~~~~~--~~L 279 (369)
+|+.|.|.+..+.-. ....+..++.++.|.++.|.+.... .+..... +.+++|+...|....-.. ..+.. +++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 899999999887632 3344567777888888877432110 0011111 234455554443210000 00001 677
Q ss_pred CEEEcccCcCcccC-CcccCCCCCCCEEEeeCCcccc-cchhhccCCCCCCEEEcccCcCceeCC
Q 017578 280 SNLNLSRNMLEGKI-PDVFGPRSYFTAIDLAYNKLSG-SIPRTLSAASYIGHLDFSHNYLCGRIP 342 (369)
Q Consensus 280 ~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~g~ip 342 (369)
..+.+..|.+...- -......+.+..|+|+.|+|.. .--+.+..+++|..|.+++|.+...+-
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 88888888775322 2345566777789999999864 233567888999999999998865443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=7.5e-08 Score=74.05 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=83.0
Q ss_pred CCCEEEeecCCcccccch---hhhCCCCCcEEeccCCcCcCCCCccccc--CCCCEEEcccCcCcccCCcccCCCCCCCE
Q 017578 231 RLADLDLSMNQISGMIPA---SLGKMAVLATLNLDFNKLSGPIPASLMN--SGISNLNLSRNMLEGKIPDVFGPRSYFTA 305 (369)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 305 (369)
.+..++++.+++. .+++ .+.....|+..++++|.+. ..|+.+.. +.++.|++++|.+. .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455667777664 2333 3334455667788888776 44554444 57788888888887 66767888888888
Q ss_pred EEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccc-cccccCCCcccC
Q 017578 306 IDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEA-SSFAYNKCLCGK 364 (369)
Q Consensus 306 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~-l~l~~N~~~c~~ 364 (369)
|+++.|.+. ..|..+..+.++-+||..+|.+. +||...-.+.+.. .++.++|+--+|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccC
Confidence 888888887 66777777888888888888776 5665433333322 234444544333
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=4.5e-08 Score=75.22 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=54.5
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhcc-CCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIG-RLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM 208 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 208 (369)
+.....|+.++|++|.+. .+|..|. ..+.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 344556666677777776 4554443 4456667777777766 66666667777777777777665 455555556666
Q ss_pred CEEEcccccCC
Q 017578 209 SRALLSRNQIS 219 (369)
Q Consensus 209 ~~L~l~~n~~~ 219 (369)
-.|+..+|...
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 66666666554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4e-06 Score=52.07 Aligned_cols=36 Identities=39% Similarity=0.649 Sum_probs=21.2
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCC
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNIS 171 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~ 171 (369)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 45555666666666666666655
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=6.4e-06 Score=51.16 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCc
Q 017578 301 SYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 301 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777777 56666777777777777777776
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=2e-06 Score=85.83 Aligned_cols=135 Identities=20% Similarity=0.231 Sum_probs=70.3
Q ss_pred CCCCEEEcCCCcCc-ccCChhcc-CCCCCCEEEeecCcCCC-cCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCE
Q 017578 134 PFLRILDLIGNKLS-GDIPRDIG-RLHRLAVLNIADNNISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSR 210 (369)
Q Consensus 134 ~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 210 (369)
.+|++||+++.... ...|..++ -+|.|+.|.+.+-.+.. .+-....++++|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664322 12222332 35666666666654431 1122234566666666666666522 45666666666
Q ss_pred EEcccccCCc-cCCchhcCCCCCCEEEeecCCccccc--c----hhhhCCCCCcEEeccCCcCcCCC
Q 017578 211 ALLSRNQISG-TIPSSISMIYRLADLDLSMNQISGMI--P----ASLGKMAVLATLNLDFNKLSGPI 270 (369)
Q Consensus 211 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~ 270 (369)
|.+.+=.+.. ..-..+..+++|++||+|........ . +.-..+++|+.||.++..+.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6666544432 11234556667777777665443211 1 11124566777777766665443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=2.6e-06 Score=84.95 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=84.1
Q ss_pred CCCCEEecCCCCCCccccCccCC-CCCCCCEEEcCCCcCccc-CChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcE
Q 017578 109 TRLSSLTLADWKGITGEIPRCIS-SIPFLRILDLIGNKLSGD-IPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMH 186 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 186 (369)
.+|++|++++...+...-|..++ .+|.|+.|.+++-.+... +-....++++|..||+++++++ .+ ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 56777777653333333333343 367777777777655421 1223356777777777777776 22 55667777777
Q ss_pred EEcccCccCC-CCCCcccCCCCCCEEEcccccCCccC--C----chhcCCCCCCEEEeecCCcccccchhh-hCCCCCcE
Q 017578 187 LDLRNNRISG-PIPGSVGRLRMMSRALLSRNQISGTI--P----SSISMIYRLADLDLSMNQISGMIPASL-GKMAVLAT 258 (369)
Q Consensus 187 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~ 258 (369)
|.+.+=.+.. ..-..+.++++|+.||++..+..... . +.-..+++|+.||.+++.+...+-+.+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776654432 11124566777777777765543211 0 111346677777777776665443333 23344444
Q ss_pred Eecc
Q 017578 259 LNLD 262 (369)
Q Consensus 259 L~L~ 262 (369)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 4433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=0.00011 Score=68.17 Aligned_cols=137 Identities=17% Similarity=0.282 Sum_probs=86.5
Q ss_pred ccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCC
Q 017578 154 IGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLA 233 (369)
Q Consensus 154 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 233 (369)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+ .++|++|++.+|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 345788999999999887 6662 2 2479999998755434566544 35899999998833224543 477
Q ss_pred EEEeecCCcc--cccchhhhCCCCCcEEeccCCc-Cc-CCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEee
Q 017578 234 DLDLSMNQIS--GMIPASLGKMAVLATLNLDFNK-LS-GPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLA 309 (369)
Q Consensus 234 ~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~-l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 309 (369)
.|++..+... +.+|. +|+.|.+.+++ .. ...|. ...++|++|++++|... ..|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccc-ccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 7887765543 12333 46677765432 11 11121 12278999999988765 3444333 578888887
Q ss_pred CCc
Q 017578 310 YNK 312 (369)
Q Consensus 310 ~n~ 312 (369)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=4.7e-05 Score=62.78 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=68.0
Q ss_pred CCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc-chhhccCCCCCCEEEc
Q 017578 254 AVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS-IPRTLSAASYIGHLDF 332 (369)
Q Consensus 254 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l 332 (369)
.+...+++++|.+. .++..-..+.|.+|.+.+|.++...|..-..+++|..|.+.+|.|... .-+.+..+|+|++|.+
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 35677888888775 222222227888888888888877776666677788888888877521 1123567788888888
Q ss_pred ccCcCceeCCC----CCCCCCcccccccc
Q 017578 333 SHNYLCGRIPD----GSPFDHLEASSFAY 357 (369)
Q Consensus 333 s~N~l~g~ip~----~~~~~~L~~l~l~~ 357 (369)
-+|+++..--. +..+|+|+.||+.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 88877632211 23567777777754
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00013 Score=67.72 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=88.0
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 209 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 209 (369)
+..+++++.|++++|.++ .+|. -..+|+.|.++++.--..+|..+. .+|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445688999999999888 6672 234699999988543336666553 6899999999842224553 467
Q ss_pred EEEcccccCC--ccCCchhcCCCCCCEEEeecCCcc--cccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcc
Q 017578 210 RALLSRNQIS--GTIPSSISMIYRLADLDLSMNQIS--GMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLS 285 (369)
Q Consensus 210 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 285 (369)
.|++..+... +.+|. +|+.|.+.++... ...|.. -.++|++|++.+|... ..|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP-~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP-ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc-ccCcEEEec
Confidence 7777765542 23343 4667776443211 011211 1257999999988765 3444333 789999998
Q ss_pred cCc
Q 017578 286 RNM 288 (369)
Q Consensus 286 ~n~ 288 (369)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 764
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00013 Score=60.18 Aligned_cols=103 Identities=22% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCC-CCCcccCCCCCCEEEc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGP-IPGSVGRLRMMSRALL 213 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l 213 (369)
....+||++|.+. .+ ..+..++.|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|++... .-..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4556677777665 22 2455666777777777777633333223345677777777766521 0123556667777777
Q ss_pred ccccCCccC---CchhcCCCCCCEEEeec
Q 017578 214 SRNQISGTI---PSSISMIYRLADLDLSM 239 (369)
Q Consensus 214 ~~n~~~~~~---~~~l~~l~~L~~L~l~~ 239 (369)
-+|.++..- -..+..+++|++||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 776665321 12345566666666654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=9.3e-05 Score=63.49 Aligned_cols=60 Identities=27% Similarity=0.439 Sum_probs=27.2
Q ss_pred CCCCEEEcCCCcCcccCChhccCCCCCCEEEeecC--cCCCcCCccccCCCCCcEEEcccCccC
Q 017578 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADN--NISGAIPPSIANLSSLMHLDLRNNRIS 195 (369)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~ 195 (369)
..|+.+++.+..++ ++ ..+..|++|++|.++.| .+.+.++.....+++|+++++++|++.
T Consensus 43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444444443 11 12334555555555555 333333333334455555555555543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0014 Score=51.15 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=4.5
Q ss_pred CCCCCCCCEEEcC
Q 017578 130 ISSIPFLRILDLI 142 (369)
Q Consensus 130 ~~~l~~L~~L~L~ 142 (369)
|.++++|+.+++.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3334344444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.20 E-value=0.0015 Score=50.93 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=63.6
Q ss_pred ccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCC
Q 017578 128 RCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRM 207 (369)
Q Consensus 128 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 207 (369)
..|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......+.++++|+.+.+.. .+.......+...++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3467777888888874 455344456778888999998875 5534445677777899999865 443344456777889
Q ss_pred CCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCc
Q 017578 208 MSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLA 257 (369)
Q Consensus 208 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 257 (369)
|+.+.+..+ +.......+.+. .|+.+.+.. .+.......|.++++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 999998765 544445566666 888888765 33333445666665553
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00035 Score=60.00 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=68.3
Q ss_pred cCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCC--cCcccCChhccCCCCCCEEEeecCcCCCcCCcc-
Q 017578 101 ISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGN--KLSGDIPRDIGRLHRLAVLNIADNNISGAIPPS- 177 (369)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~- 177 (369)
+..-...+..|+.|++.+ ..++.. ..+..+++|++|.++.| ++.+.++.....+++|++|++++|++.. ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n-~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVIN-VGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccccccchhhhhhhc-cceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 444445566666666663 444321 23566889999999999 6666666556677999999999999862 333
Q ss_pred --ccCCCCCcEEEcccCccCCCCC---CcccCCCCCCEEEc
Q 017578 178 --IANLSSLMHLDLRNNRISGPIP---GSVGRLRMMSRALL 213 (369)
Q Consensus 178 --l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l 213 (369)
+..+.+|..|++.+|..++.-. ..|.-+++|++|+-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 3556777788888776653111 12334555555543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.21 E-value=6.4e-05 Score=68.47 Aligned_cols=109 Identities=21% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCCCCCEEEeecCC-cccccchhhh-CCCCCcEEeccCCcCcCCC-Cccccc--CCCCEEEcccCcCcccC-----Cccc
Q 017578 228 MIYRLADLDLSMNQ-ISGMIPASLG-KMAVLATLNLDFNKLSGPI-PASLMN--SGISNLNLSRNMLEGKI-----PDVF 297 (369)
Q Consensus 228 ~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~-~~~~~~--~~L~~L~L~~n~l~~~~-----~~~~ 297 (369)
+..+|++|.++.++ ++..-...++ ++..|+.+++.++...... -..... +.++++.++++.+.... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34556666665554 2222112222 3455666666655432111 011111 66677777665542111 1222
Q ss_pred CCCCCCCEEEeeCCccc-ccchhhccCCCCCCEEEcccCc
Q 017578 298 GPRSYFTAIDLAYNKLS-GSIPRTLSAASYIGHLDFSHNY 336 (369)
Q Consensus 298 ~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~ls~N~ 336 (369)
..+..++.+.++++... +.....+..+++|+.+++-+++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34556667777776643 2333445666777777776664
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.00022 Score=61.76 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccC-CcccCCCCCCCEEEee
Q 017578 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKI-PDVFGPRSYFTAIDLA 309 (369)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~ 309 (369)
+.+.|++.++.+++. .....|+.|+.|.|+-|.|+..-| ..-.++|++|.|..|.+.+.. -..+.++++|+.|-|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344455555555422 223345555555555555542211 111144555555555444211 1123344444555555
Q ss_pred CCcccc
Q 017578 310 YNKLSG 315 (369)
Q Consensus 310 ~n~l~~ 315 (369)
.|.-.|
T Consensus 97 ENPCc~ 102 (388)
T KOG2123|consen 97 ENPCCG 102 (388)
T ss_pred cCCccc
Confidence 444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.00044 Score=60.01 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccc-cchhhhCCCCCcEEec
Q 017578 183 SLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGM-IPASLGKMAVLATLNL 261 (369)
Q Consensus 183 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L 261 (369)
+.+.|+..++.+..+ .....++.|+.|.|+-|+++. -..+..+++|++|+|..|.+.+. -...+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 444455555544421 223345555555555555542 12344455555555555554421 0122344555555555
Q ss_pred cCCcCcCC
Q 017578 262 DFNKLSGP 269 (369)
Q Consensus 262 ~~n~l~~~ 269 (369)
..|.-.+.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 55544433
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0073 Score=31.12 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=5.3
Q ss_pred CCEEEeeCCccc
Q 017578 303 FTAIDLAYNKLS 314 (369)
Q Consensus 303 L~~L~L~~n~l~ 314 (369)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.51 E-value=0.0051 Score=31.73 Aligned_cols=18 Identities=50% Similarity=0.827 Sum_probs=9.0
Q ss_pred CCEEEcCCCcCcccCChhc
Q 017578 136 LRILDLIGNKLSGDIPRDI 154 (369)
Q Consensus 136 L~~L~L~~n~l~~~~p~~~ 154 (369)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.08 E-value=7.5e-05 Score=71.56 Aligned_cols=180 Identities=21% Similarity=0.245 Sum_probs=89.7
Q ss_pred CCCEEEcCCCcCcccCC----hhccCCCCCCEEEeecCcCCCcCCcc----ccCC-CCCcEEEcccCccCCC----CCCc
Q 017578 135 FLRILDLIGNKLSGDIP----RDIGRLHRLAVLNIADNNISGAIPPS----IANL-SSLMHLDLRNNRISGP----IPGS 201 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~ 201 (369)
.+..+.|.+|.+..... ..+...+.|+.|+++.|.+.+..-.. +... ..+++|++..+.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37778888888774332 23456777888888888776322111 2221 4556666666665532 2333
Q ss_pred ccCCCCCCEEEcccccCCc----cCCchhc----CCCCCCEEEeecCCcccc----cchhhhCCCC-CcEEeccCCcCcC
Q 017578 202 VGRLRMMSRALLSRNQISG----TIPSSIS----MIYRLADLDLSMNQISGM----IPASLGKMAV-LATLNLDFNKLSG 268 (369)
Q Consensus 202 l~~l~~L~~L~l~~n~~~~----~~~~~l~----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~ 268 (369)
+.....++.+++..|.+.. .++..+. ...++++|.++++.++.. ....+...+. +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 4455666777777666531 1122222 345566666666555422 1122233333 4445555555543
Q ss_pred CCCccccc------CCCCEEEcccCcCcccC----CcccCCCCCCCEEEeeCCccc
Q 017578 269 PIPASLMN------SGISNLNLSRNMLEGKI----PDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 269 ~~~~~~~~------~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~ 314 (369)
..-..... ..+++++++.|.+++.. ...+..++.++.+.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 21111110 34455555555554322 223334445555555555554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.41 E-value=0.0039 Score=60.34 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=6.8
Q ss_pred CCEEEcccCcC
Q 017578 327 IGHLDFSHNYL 337 (369)
Q Consensus 327 L~~L~ls~N~l 337 (369)
++.|+++.+..
T Consensus 403 l~~L~l~~~~~ 413 (482)
T KOG1947|consen 403 LRVLNLSDCRL 413 (482)
T ss_pred cceEecccCcc
Confidence 56677666653
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.054 Score=25.87 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=5.3
Q ss_pred CCCEEEcCCCcCc
Q 017578 135 FLRILDLIGNKLS 147 (369)
Q Consensus 135 ~L~~L~L~~n~l~ 147 (369)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.25 E-value=0.00073 Score=64.86 Aligned_cols=164 Identities=21% Similarity=0.281 Sum_probs=75.7
Q ss_pred ccccCCCCCCEEecCCCCCCccc----cCccCCCC-CCCCEEEcCCCcCccc----CChhccCCCCCCEEEeecCcCCC-
Q 017578 103 PAVCKLTRLSSLTLADWKGITGE----IPRCISSI-PFLRILDLIGNKLSGD----IPRDIGRLHRLAVLNIADNNISG- 172 (369)
Q Consensus 103 ~~l~~l~~L~~L~l~~~~~~~~~----~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~~~~- 172 (369)
..+...+.|+.|++++ +.+.+. +-..+... ..+++|++..|.+++. +...+.....++.++++.|.+..
T Consensus 109 ~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred HHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence 3445556666666664 444322 11112222 3455566666655522 22334445566666666665520
Q ss_pred ---cCCcccc----CCCCCcEEEcccCccCCC----CCCcccCCCC-CCEEEcccccCCcc----CCchhcCC-CCCCEE
Q 017578 173 ---AIPPSIA----NLSSLMHLDLRNNRISGP----IPGSVGRLRM-MSRALLSRNQISGT----IPSSISMI-YRLADL 235 (369)
Q Consensus 173 ---~~~~~l~----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L 235 (369)
.++..+. ...++++|++.++.++.. +...+...+. +..+++..|.+.+. +...+..+ ..++++
T Consensus 188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l 267 (478)
T KOG4308|consen 188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVL 267 (478)
T ss_pred hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhh
Confidence 1122222 345566666666554411 1112233333 44455655555432 12222333 445666
Q ss_pred EeecCCccccc----chhhhCCCCCcEEeccCCcCc
Q 017578 236 DLSMNQISGMI----PASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 236 ~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 267 (369)
+++.|.++... ...+..++.++++.+..|.+.
T Consensus 268 ~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 268 DLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 66666665432 223334455666666666554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=0.017 Score=47.99 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCC-CCCCCCEEEcCCC-cCccc
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCIS-SIPFLRILDLIGN-KLSGD 149 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~L~~n-~l~~~ 149 (369)
..|..+|-++ ..+...--..+.+++.++.|.+.++..+...--+.++ -.++|+.|++++| +|+..
T Consensus 101 ~~IeaVDAsd-------------s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 101 VKIEAVDASD-------------SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred ceEEEEecCC-------------chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 3567777776 4444444556777777777777765555433222222 2467788888765 45544
Q ss_pred CChhccCCCCCCEEEeec
Q 017578 150 IPRDIGRLHRLAVLNIAD 167 (369)
Q Consensus 150 ~p~~~~~l~~L~~L~L~~ 167 (369)
--..+..+++|+.|.+.+
T Consensus 168 GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHHHhhhhHHHHhcC
Confidence 444556677777776654
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.16 E-value=0.01 Score=57.33 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=12.1
Q ss_pred hccCCCCCCEEEcccCc
Q 017578 320 TLSAASYIGHLDFSHNY 336 (369)
Q Consensus 320 ~l~~l~~L~~L~ls~N~ 336 (369)
....++.++.+.+.++.
T Consensus 357 ~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHhcCCCcchhhhhhhh
Confidence 34567778888877776
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.83 E-value=0.005 Score=52.24 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=42.3
Q ss_pred cccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCC
Q 017578 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 183 (369)
.+..+.+.+.||+++ +.+. .+-..|.-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.++...++
T Consensus 37 ei~~~kr~tvld~~s-~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSS-NRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhh-hHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 444555555555553 3222 12222334444555555555554 44555555555555555555544 44555555555
Q ss_pred CcEEEcccCcc
Q 017578 184 LMHLDLRNNRI 194 (369)
Q Consensus 184 L~~L~l~~n~l 194 (369)
++++++.+|.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 55555555443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.87 E-value=0.096 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.6
Q ss_pred CCCCEEEeeCCcccccch
Q 017578 301 SYFTAIDLAYNKLSGSIP 318 (369)
Q Consensus 301 ~~L~~L~L~~n~l~~~~p 318 (369)
++|++|+|++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455566666666554433
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=0.031 Score=46.51 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=44.3
Q ss_pred CCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCC-CCccccc--CCCCEEEcccC-cCcccCCcccCCCCCCCEE
Q 017578 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP-IPASLMN--SGISNLNLSRN-MLEGKIPDVFGPRSYFTAI 306 (369)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~--~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L 306 (369)
.++.+|-++..+..+.-+.+..+++++.|.+.+|.--+. .-+.+.. ++|+.|++++| ++++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777777766667777777777777776642211 1111111 55666666644 3444444445555555555
Q ss_pred EeeC
Q 017578 307 DLAY 310 (369)
Q Consensus 307 ~L~~ 310 (369)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.08 E-value=0.42 Score=25.44 Aligned_cols=14 Identities=64% Similarity=0.793 Sum_probs=7.9
Q ss_pred CCCCEEEcCCCcCc
Q 017578 134 PFLRILDLIGNKLS 147 (369)
Q Consensus 134 ~~L~~L~L~~n~l~ 147 (369)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.08 E-value=0.42 Score=25.44 Aligned_cols=14 Identities=64% Similarity=0.793 Sum_probs=7.9
Q ss_pred CCCCEEEcCCCcCc
Q 017578 134 PFLRILDLIGNKLS 147 (369)
Q Consensus 134 ~~L~~L~L~~n~l~ 147 (369)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.43 E-value=0.18 Score=46.76 Aligned_cols=158 Identities=18% Similarity=0.111 Sum_probs=87.6
Q ss_pred CCCCCEEecCCCCCCccccCccC-CCCCCCCEEEcCCCcCccc-CChhc-cCCCCCCEEEeecCcC-CCcCCccc-cCCC
Q 017578 108 LTRLSSLTLADWKGITGEIPRCI-SSIPFLRILDLIGNKLSGD-IPRDI-GRLHRLAVLNIADNNI-SGAIPPSI-ANLS 182 (369)
Q Consensus 108 l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~-~p~~~-~~l~~L~~L~L~~n~~-~~~~~~~l-~~l~ 182 (369)
+..+..+++..++.++..--..+ ..+..|++|+.+++...+. .-..+ .+.++|+.|-+..++- +..--..+ .+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 44455566555555543321111 3466777777776644211 11122 3567777777777652 21111112 3556
Q ss_pred CCcEEEcccCccC--CCCCCcccCCCCCCEEEcccccCCccC-----CchhcCCCCCCEEEeecCCcc-cccchhhhCCC
Q 017578 183 SLMHLDLRNNRIS--GPIPGSVGRLRMMSRALLSRNQISGTI-----PSSISMIYRLADLDLSMNQIS-GMIPASLGKMA 254 (369)
Q Consensus 183 ~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~ 254 (369)
.|+.+++..+... +++...-.+.+.|+.+.++++...... ...-..+..|+.+.++++... ...-+.+..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 7777777766532 223333345677888888876543211 222245667888888887654 23445666778
Q ss_pred CCcEEeccCCc
Q 017578 255 VLATLNLDFNK 265 (369)
Q Consensus 255 ~L~~L~L~~n~ 265 (369)
+|+.+++-+++
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 88888887765
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.37 E-value=0.021 Score=48.61 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=69.9
Q ss_pred cCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCC
Q 017578 129 CISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM 208 (369)
Q Consensus 129 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 208 (369)
.+......+.||++.|++. ..-..+.-++.|..|+++.|.+. ..|..+.....++.+++..|..+ ..|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4566778888999988876 44556667788888899988887 77888888888888888888776 678888888888
Q ss_pred CEEEcccccCC
Q 017578 209 SRALLSRNQIS 219 (369)
Q Consensus 209 ~~L~l~~n~~~ 219 (369)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888887754
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.55 E-value=1 Score=24.15 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=12.9
Q ss_pred CCCCEEEcccCcCceeCCC
Q 017578 325 SYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 325 ~~L~~L~ls~N~l~g~ip~ 343 (369)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46778888888877 5555
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.50 E-value=2.5 Score=22.63 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.1
Q ss_pred CCCCCEEEcccCcCc
Q 017578 324 ASYIGHLDFSHNYLC 338 (369)
Q Consensus 324 l~~L~~L~ls~N~l~ 338 (369)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 367888999999886
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.69 E-value=3.1 Score=22.63 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=10.5
Q ss_pred CCCCEEEcccCcCc
Q 017578 325 SYIGHLDFSHNYLC 338 (369)
Q Consensus 325 ~~L~~L~ls~N~l~ 338 (369)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 56778888888774
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.10 E-value=1.6 Score=42.13 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=38.2
Q ss_pred CCCCCcEEeccCCcCcCCCC-ccccc--CCCCEEEcccC--cCcccCCcccC--CCCCCCEEEeeCCccccc
Q 017578 252 KMAVLATLNLDFNKLSGPIP-ASLMN--SGISNLNLSRN--MLEGKIPDVFG--PRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 252 ~l~~L~~L~L~~n~l~~~~~-~~~~~--~~L~~L~L~~n--~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~ 316 (369)
+.+.+..++|++|++..... ..+.. ++|+.|+|++| .+.. ..++. ....|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 45677888888888753221 12222 88888888888 3321 11222 223477888888887653
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.62 E-value=26 Score=33.53 Aligned_cols=59 Identities=27% Similarity=0.270 Sum_probs=27.7
Q ss_pred CCEEEcCCCcCcccCChhccC---CCCCCEEEeecCcCC---CcCCccccCCCCCcEEEcccCcc
Q 017578 136 LRILDLIGNKLSGDIPRDIGR---LHRLAVLNIADNNIS---GAIPPSIANLSSLMHLDLRNNRI 194 (369)
Q Consensus 136 L~~L~L~~n~l~~~~p~~~~~---l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l 194 (369)
+.+++++.|.....+|..+.. -.-++.++.+...+. +.-+-..+.-++++..+++.|..
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 556666666665555543321 123455555554432 11111223344566666665543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.13 E-value=4.2 Score=39.40 Aligned_cols=63 Identities=25% Similarity=0.243 Sum_probs=35.5
Q ss_pred CCCCCCEEEeecCCcccc--cchhhhCCCCCcEEeccCC--cCcCCCCc--ccccCCCCEEEcccCcCcc
Q 017578 228 MIYRLADLDLSMNQISGM--IPASLGKMAVLATLNLDFN--KLSGPIPA--SLMNSGISNLNLSRNMLEG 291 (369)
Q Consensus 228 ~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n--~l~~~~~~--~~~~~~L~~L~L~~n~l~~ 291 (369)
+.+.+..+.|++|++... +..--...++|+.|+|++| .+.. .++ .+....|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCcccc
Confidence 445667777777776522 1122234567888888877 3221 111 1122667777777877754
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.47 E-value=12 Score=19.71 Aligned_cols=11 Identities=64% Similarity=0.794 Sum_probs=5.0
Q ss_pred CCCCEEEcCCC
Q 017578 134 PFLRILDLIGN 144 (369)
Q Consensus 134 ~~L~~L~L~~n 144 (369)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 91
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.17 E-value=11 Score=27.51 Aligned_cols=11 Identities=36% Similarity=0.455 Sum_probs=4.3
Q ss_pred cchHHHHHHHH
Q 017578 4 CVSFYTAQLLL 14 (369)
Q Consensus 4 ~~~~~~~~~~~ 14 (369)
-+.++++.++|
T Consensus 3 SK~~llL~l~L 13 (95)
T PF07172_consen 3 SKAFLLLGLLL 13 (95)
T ss_pred hhHHHHHHHHH
Confidence 33444333333
No 92
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=26.56 E-value=31 Score=23.64 Aligned_cols=6 Identities=33% Similarity=1.486 Sum_probs=3.4
Q ss_pred CCCCCC
Q 017578 55 GNDCCH 60 (369)
Q Consensus 55 ~~~~c~ 60 (369)
..+||+
T Consensus 61 ~~~CC~ 66 (75)
T PF02950_consen 61 NSECCS 66 (75)
T ss_dssp TTCBSS
T ss_pred CCCCCC
Confidence 455665
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.97 E-value=53 Score=38.72 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred EeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 307 DLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 307 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
||++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
No 94
>PLN03207 stomagen; Provisional
Probab=22.83 E-value=71 Score=23.21 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=8.2
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 017578 1 MGGCVSFYTAQLLLIFLAV 19 (369)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (369)
|++.++...++++++++++
T Consensus 6 ~~~tt~~~~lffLl~~lll 24 (113)
T PLN03207 6 MTATTRCLTLFFLLFFLLL 24 (113)
T ss_pred ccccchhHHHHHHHHHHHH
Confidence 3444555444444433333
Done!