Query 017578
Match_columns 369
No_of_seqs 411 out of 4494
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-49 1.1E-53 360.2 24.4 303 26-369 2-312 (313)
2 3rgz_A Protein brassinosteroid 100.0 7.7E-44 2.6E-48 361.8 23.3 329 22-360 4-355 (768)
3 3rgz_A Protein brassinosteroid 100.0 7.3E-42 2.5E-46 347.2 26.1 274 95-369 404-748 (768)
4 4eco_A Uncharacterized protein 100.0 6.4E-43 2.2E-47 347.7 17.7 316 26-361 26-501 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 1.4E-40 4.8E-45 337.6 19.1 310 24-361 263-741 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 2.8E-37 9.7E-42 295.4 25.9 281 72-366 30-413 (455)
7 4fcg_A Uncharacterized protein 100.0 1.5E-36 5E-41 278.1 17.0 270 25-338 22-314 (328)
8 2id5_A Lingo-1, leucine rich r 100.0 2.7E-35 9.4E-40 283.5 24.4 291 62-366 13-338 (477)
9 3o6n_A APL1; leucine-rich repe 100.0 1.8E-34 6.1E-39 270.7 22.5 255 103-365 63-356 (390)
10 3oja_B Anopheles plasmodium-re 100.0 3.5E-34 1.2E-38 283.1 23.2 263 95-364 61-361 (597)
11 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-33 5.4E-38 276.6 25.7 160 203-366 350-515 (562)
12 3t6q_A CD180 antigen; protein- 100.0 3.5E-34 1.2E-38 283.7 21.0 265 100-366 292-565 (606)
13 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-35 1.4E-39 266.8 11.3 218 95-339 87-306 (313)
14 3vq2_A TLR4, TOLL-like recepto 100.0 1E-32 3.4E-37 273.2 25.4 142 225-367 419-564 (606)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-32 3.8E-37 268.1 24.9 264 95-366 55-486 (520)
16 3zyj_A Leucine-rich repeat-con 100.0 3.1E-32 1.1E-36 259.5 25.3 233 134-367 64-298 (440)
17 3zyi_A Leucine-rich repeat-con 100.0 5.2E-32 1.8E-36 258.8 25.4 232 135-367 76-309 (452)
18 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-32 1.6E-36 269.3 26.1 282 72-367 52-586 (635)
19 2z80_A TOLL-like receptor 2, v 100.0 1.8E-32 6E-37 253.7 18.7 260 101-365 46-318 (353)
20 3v47_A TOLL-like receptor 5B a 100.0 8.7E-32 3E-36 257.4 23.9 259 72-344 54-414 (455)
21 3t6q_A CD180 antigen; protein- 100.0 1.8E-31 6E-36 264.3 26.0 273 72-359 33-361 (606)
22 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-32 1.8E-36 264.9 21.8 284 59-360 4-422 (549)
23 4eco_A Uncharacterized protein 100.0 3.5E-32 1.2E-36 270.4 20.6 283 72-364 273-603 (636)
24 2z63_A TOLL-like receptor 4, v 100.0 4.1E-31 1.4E-35 259.6 24.7 272 95-367 62-537 (570)
25 2id5_A Lingo-1, leucine rich r 100.0 1.7E-31 5.9E-36 256.9 21.4 280 72-365 56-360 (477)
26 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-31 1.7E-35 270.4 25.0 284 62-361 16-375 (844)
27 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-31 8.8E-36 266.6 22.3 271 95-366 339-627 (680)
28 1xku_A Decorin; proteoglycan, 100.0 1.3E-30 4.6E-35 238.9 24.8 236 95-338 62-306 (330)
29 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4E-35 239.5 23.0 220 110-338 55-277 (332)
30 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-30 5.2E-35 257.6 25.6 124 72-196 32-167 (606)
31 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-31 9.9E-36 258.1 19.3 127 72-218 21-150 (520)
32 1xku_A Decorin; proteoglycan, 100.0 1.9E-30 6.3E-35 237.9 23.6 246 109-362 52-307 (330)
33 2z66_A Variable lymphocyte rec 100.0 4.1E-31 1.4E-35 239.7 18.2 255 109-365 28-291 (306)
34 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-30 5.9E-35 260.6 24.5 250 72-335 25-306 (680)
35 2z66_A Variable lymphocyte rec 100.0 2E-31 6.8E-36 241.7 15.3 209 105-315 48-262 (306)
36 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-30 6.2E-35 238.2 21.2 277 61-359 34-331 (332)
37 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-30 4.6E-35 254.9 20.9 112 250-365 383-514 (549)
38 4fcg_A Uncharacterized protein 100.0 3.3E-30 1.1E-34 235.9 20.6 223 133-360 80-313 (328)
39 3j0a_A TOLL-like receptor 5; m 100.0 8.8E-30 3E-34 261.1 25.1 272 72-361 48-394 (844)
40 4ecn_A Leucine-rich repeat pro 100.0 9.1E-30 3.1E-34 258.5 24.5 278 72-361 515-840 (876)
41 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-30 2.7E-34 250.3 22.8 137 72-228 52-193 (562)
42 3o6n_A APL1; leucine-rich repe 100.0 9.8E-30 3.4E-34 238.4 21.2 263 94-366 78-379 (390)
43 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-29 4.2E-34 227.6 19.6 250 112-365 14-265 (285)
44 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-29 4.6E-34 227.3 18.9 274 64-357 5-283 (285)
45 2z80_A TOLL-like receptor 2, v 100.0 6E-30 2E-34 236.7 16.6 256 72-343 52-319 (353)
46 3oja_B Anopheles plasmodium-re 100.0 2.3E-29 7.7E-34 248.6 21.0 263 94-365 84-384 (597)
47 1wwl_A Monocyte differentiatio 100.0 1.4E-31 4.8E-36 243.4 3.7 245 107-361 41-309 (312)
48 4fmz_A Internalin; leucine ric 100.0 2.7E-28 9.1E-33 225.0 24.6 258 72-360 66-345 (347)
49 1wwl_A Monocyte differentiatio 100.0 8.7E-31 3E-35 238.2 4.7 266 50-339 21-310 (312)
50 3zyi_A Leucine-rich repeat-con 100.0 2.7E-28 9.1E-33 233.1 22.0 226 109-337 75-302 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 3.4E-28 1.2E-32 231.6 21.9 226 109-337 64-291 (440)
52 4fmz_A Internalin; leucine ric 100.0 8.9E-28 3.1E-32 221.5 23.2 263 72-365 44-328 (347)
53 3o53_A Protein LRIM1, AGAP0063 100.0 4.3E-30 1.5E-34 234.2 5.8 251 95-359 20-273 (317)
54 1o6v_A Internalin A; bacterial 100.0 1.7E-27 5.8E-32 228.4 24.0 257 73-361 69-366 (466)
55 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-27 1.3E-31 225.0 25.1 248 72-359 42-297 (457)
56 3oja_A Leucine-rich immune mol 100.0 2.9E-29 9.9E-34 241.6 10.3 247 106-366 31-287 (487)
57 1o6v_A Internalin A; bacterial 100.0 3.7E-27 1.3E-31 226.1 23.1 217 130-363 173-390 (466)
58 3o53_A Protein LRIM1, AGAP0063 100.0 1E-28 3.6E-33 225.0 11.0 241 110-364 11-253 (317)
59 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-26 6.5E-31 228.9 26.4 141 101-244 46-187 (635)
60 2z62_A TOLL-like receptor 4, v 100.0 2.3E-27 7.7E-32 211.8 17.6 216 125-343 21-242 (276)
61 2z63_A TOLL-like receptor 4, v 100.0 4.4E-27 1.5E-31 230.9 21.1 269 72-361 28-360 (570)
62 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-26 7.2E-31 219.8 23.2 251 72-361 64-352 (457)
63 3oja_A Leucine-rich immune mol 99.9 7E-28 2.4E-32 231.9 12.8 223 130-365 30-254 (487)
64 2o6q_A Variable lymphocyte rec 99.9 2.7E-26 9.4E-31 204.2 21.3 218 56-316 2-220 (270)
65 2o6q_A Variable lymphocyte rec 99.9 6.3E-26 2.2E-30 201.8 22.4 201 135-338 17-218 (270)
66 2z62_A TOLL-like receptor 4, v 99.9 3.8E-26 1.3E-30 203.9 20.1 209 109-318 28-241 (276)
67 1p9a_G Platelet glycoprotein I 99.9 2.4E-26 8.3E-31 206.5 18.4 201 130-337 6-207 (290)
68 1jl5_A Outer protein YOPM; leu 99.9 2.4E-26 8.3E-31 219.2 15.9 245 72-359 11-288 (454)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-26 1E-30 225.5 15.8 263 48-361 10-297 (622)
70 1jl5_A Outer protein YOPM; leu 99.9 1.8E-24 6.2E-29 206.3 24.0 237 95-362 141-410 (454)
71 3rfs_A Internalin B, repeat mo 99.9 3.8E-25 1.3E-29 197.0 17.7 202 131-343 38-240 (272)
72 1p9a_G Platelet glycoprotein I 99.9 8.1E-25 2.8E-29 196.6 18.8 205 104-316 5-210 (290)
73 2ast_B S-phase kinase-associat 99.9 2.2E-27 7.4E-32 217.8 1.7 264 57-343 34-311 (336)
74 3rfs_A Internalin B, repeat mo 99.9 7.1E-25 2.4E-29 195.2 15.9 211 104-326 36-247 (272)
75 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-27 5.7E-32 228.0 -3.5 275 73-361 86-411 (461)
76 2ca6_A RAN GTPase-activating p 99.9 1.7E-26 5.7E-31 216.2 1.9 242 100-342 23-320 (386)
77 4glp_A Monocyte differentiatio 99.9 6E-25 2.1E-29 199.4 11.4 222 135-361 65-307 (310)
78 2xwt_C Thyrotropin receptor; s 99.9 7.3E-24 2.5E-28 185.0 16.8 195 135-335 32-236 (239)
79 3goz_A Leucine-rich repeat-con 99.9 9.9E-26 3.4E-30 209.1 5.1 245 95-340 8-299 (362)
80 3m19_A Variable lymphocyte rec 99.9 8.5E-24 2.9E-28 186.0 17.2 192 57-269 3-194 (251)
81 2xwt_C Thyrotropin receptor; s 99.9 3.5E-24 1.2E-28 187.0 14.1 206 146-360 23-238 (239)
82 4glp_A Monocyte differentiatio 99.9 5.4E-24 1.8E-28 193.2 14.7 226 107-339 62-308 (310)
83 3m19_A Variable lymphocyte rec 99.9 3.3E-23 1.1E-27 182.2 19.0 179 135-316 15-194 (251)
84 1z7x_W Ribonuclease inhibitor; 99.9 2.9E-26 1E-30 219.3 -2.1 274 72-361 113-440 (461)
85 3goz_A Leucine-rich repeat-con 99.9 4.6E-25 1.6E-29 204.6 4.9 250 113-363 2-299 (362)
86 2ca6_A RAN GTPase-activating p 99.9 1.1E-25 3.9E-30 210.5 -0.4 240 125-364 23-319 (386)
87 1h6u_A Internalin H; cell adhe 99.9 6.3E-23 2.2E-27 185.9 17.5 194 105-315 37-231 (308)
88 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-22 9.2E-27 197.4 21.6 225 72-343 61-302 (622)
89 4ay9_X Follicle-stimulating ho 99.9 1.9E-22 6.3E-27 186.2 16.4 238 113-357 13-255 (350)
90 1h6u_A Internalin H; cell adhe 99.9 1.9E-22 6.4E-27 182.8 15.9 194 130-339 37-231 (308)
91 2ast_B S-phase kinase-associat 99.9 6.5E-24 2.2E-28 194.6 5.2 243 109-361 47-306 (336)
92 3cvr_A Invasion plasmid antige 99.9 2.1E-21 7.3E-26 188.9 18.1 189 109-325 59-254 (571)
93 2o6s_A Variable lymphocyte rec 99.9 2.2E-21 7.5E-26 165.5 14.5 130 135-264 29-158 (208)
94 2o6s_A Variable lymphocyte rec 99.9 5.3E-21 1.8E-25 163.1 15.9 159 159-324 29-188 (208)
95 3cvr_A Invasion plasmid antige 99.9 5.3E-21 1.8E-25 186.1 17.5 194 62-299 50-252 (571)
96 4ay9_X Follicle-stimulating ho 99.9 1.4E-20 4.9E-25 173.5 18.4 227 101-335 24-256 (350)
97 2v9t_B SLIT homolog 2 protein 99.8 1.1E-20 3.9E-25 162.5 13.6 150 185-337 14-164 (220)
98 4b8c_D Glucose-repressible alc 99.8 5E-22 1.7E-26 199.7 4.4 261 27-314 129-404 (727)
99 2xot_A Amphoterin-induced prot 99.8 6.9E-21 2.4E-25 176.3 11.8 127 137-266 21-148 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-20 1.6E-24 158.6 13.6 155 185-342 14-170 (220)
101 3e6j_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 156.7 16.6 162 52-244 12-173 (229)
102 1h6t_A Internalin B; cell adhe 99.8 1.3E-19 4.5E-24 162.6 14.7 172 130-315 42-214 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-20 2.4E-24 157.6 12.0 155 161-318 14-170 (220)
104 1h6t_A Internalin B; cell adhe 99.8 3.7E-19 1.3E-23 159.7 16.7 173 105-292 42-215 (291)
105 3e6j_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 154.5 15.5 151 184-338 21-172 (229)
106 2v9t_B SLIT homolog 2 protein 99.8 7.1E-19 2.4E-23 151.3 15.5 153 161-316 14-167 (220)
107 1m9s_A Internalin B; cell inva 99.8 5.9E-19 2E-23 173.4 16.6 173 105-292 39-212 (605)
108 2xot_A Amphoterin-induced prot 99.8 2.4E-19 8.1E-24 166.0 12.9 175 112-290 21-202 (361)
109 1m9s_A Internalin B; cell inva 99.8 4E-19 1.4E-23 174.6 14.5 189 111-316 23-212 (605)
110 3ogk_B Coronatine-insensitive 99.8 1.1E-20 3.7E-25 186.3 2.7 255 104-360 187-500 (592)
111 3ogk_B Coronatine-insensitive 99.8 6.4E-21 2.2E-25 187.9 1.0 233 127-360 263-525 (592)
112 1dce_A Protein (RAB geranylger 99.8 2.9E-22 9.9E-27 195.6 -10.4 201 131-354 346-566 (567)
113 4ezg_A Putative uncharacterize 99.8 1.7E-18 5.8E-23 146.3 13.9 105 157-265 43-147 (197)
114 4ezg_A Putative uncharacterize 99.8 1.8E-18 6E-23 146.2 13.6 152 131-290 41-194 (197)
115 1xeu_A Internalin C; cellular 99.8 6.9E-19 2.4E-23 155.6 8.7 170 156-340 17-187 (263)
116 4b8c_D Glucose-repressible alc 99.8 2.3E-19 8E-24 180.3 4.9 221 109-342 173-408 (727)
117 1dce_A Protein (RAB geranylger 99.8 1.4E-21 4.8E-26 190.8 -11.7 204 105-332 345-567 (567)
118 1xeu_A Internalin C; cellular 99.7 2.2E-18 7.7E-23 152.3 9.6 170 107-292 17-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 7.2E-18 2.5E-22 141.8 10.5 132 137-271 11-143 (192)
120 1w8a_A SLIT protein; signaling 99.7 5.8E-18 2E-22 142.4 9.3 176 185-367 11-189 (192)
121 2p1m_B Transport inhibitor res 99.7 1.5E-19 5.1E-24 178.1 -1.4 131 229-360 371-518 (594)
122 2p1m_B Transport inhibitor res 99.7 8.4E-20 2.9E-24 179.9 -4.7 107 253-360 371-493 (594)
123 2wfh_A SLIT homolog 2 protein 99.7 4.2E-17 1.4E-21 137.2 11.8 129 234-366 14-144 (193)
124 2ell_A Acidic leucine-rich nuc 99.7 5E-17 1.7E-21 133.5 11.4 132 134-267 24-160 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.1E-21 130.2 11.4 132 182-338 24-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.7 7.8E-17 2.7E-21 129.6 8.5 127 134-262 17-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.7 7.9E-16 2.7E-20 129.3 13.8 109 134-243 31-139 (193)
128 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.9E-21 127.6 7.9 129 108-239 16-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 1.9E-15 6.3E-20 125.2 13.7 111 134-244 28-138 (177)
130 2o6r_A Variable lymphocyte rec 99.6 1.1E-15 3.6E-20 126.7 12.2 132 208-342 9-141 (177)
131 3sb4_A Hypothetical leucine ri 99.6 4.9E-16 1.7E-20 141.8 6.7 194 157-354 100-327 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.6 5.3E-15 1.8E-19 122.4 9.3 130 132-266 17-152 (176)
133 3g39_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 119.2 11.1 108 256-365 11-119 (170)
134 1ds9_A Outer arm dynein; leuci 99.6 3.1E-17 1.1E-21 138.6 -5.6 149 106-260 15-180 (198)
135 1ds9_A Outer arm dynein; leuci 99.5 7.3E-17 2.5E-21 136.3 -4.3 152 156-338 16-185 (198)
136 2r9u_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 117.0 11.3 107 257-365 15-122 (174)
137 3sb4_A Hypothetical leucine ri 99.5 1.6E-14 5.4E-19 131.8 9.0 220 108-332 48-328 (329)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.2E-19 118.4 9.2 134 178-338 15-153 (176)
139 4fdw_A Leucine rich hypothetic 99.5 1.3E-12 4.3E-17 122.2 21.4 229 97-338 124-358 (401)
140 4fdw_A Leucine rich hypothetic 99.5 2.1E-12 7.3E-17 120.6 22.4 215 110-334 158-379 (401)
141 3g39_A Variable lymphocyte rec 99.5 2.6E-13 8.7E-18 111.5 12.4 106 136-244 11-116 (170)
142 2r9u_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 110.0 12.0 104 137-243 15-118 (174)
143 2ifg_A High affinity nerve gro 99.4 6.3E-13 2.2E-17 122.0 9.7 107 258-366 12-121 (347)
144 3un9_A NLR family member X1; l 99.4 2.6E-14 8.9E-19 132.3 -2.3 166 157-322 71-260 (372)
145 3un9_A NLR family member X1; l 99.4 1.2E-14 4.2E-19 134.5 -4.9 181 134-314 72-283 (372)
146 2ifg_A High affinity nerve gro 99.3 1.5E-11 5.1E-16 112.8 9.5 105 113-220 12-117 (347)
147 2ra8_A Uncharacterized protein 99.1 3.9E-11 1.3E-15 110.2 5.8 82 253-336 251-341 (362)
148 2ra8_A Uncharacterized protein 99.0 2.2E-10 7.5E-15 105.2 6.7 135 202-339 168-321 (362)
149 4fs7_A Uncharacterized protein 99.0 4E-08 1.4E-12 91.5 19.3 77 277-357 297-375 (394)
150 4gt6_A Cell surface protein; l 98.9 1.7E-07 6E-12 87.2 19.0 127 225-357 260-387 (394)
151 4fs7_A Uncharacterized protein 98.8 7.7E-08 2.6E-12 89.6 16.2 129 200-335 247-376 (394)
152 1io0_A Tropomodulin; LRR prote 98.8 2.9E-09 9.9E-14 88.4 3.7 115 224-338 30-164 (185)
153 3rw6_A Nuclear RNA export fact 98.7 5.1E-10 1.7E-14 97.9 -2.4 64 155-220 167-234 (267)
154 4gt6_A Cell surface protein; l 98.7 1.8E-06 6.1E-11 80.3 19.6 131 200-337 259-390 (394)
155 1io0_A Tropomodulin; LRR prote 98.5 1.4E-08 4.9E-13 84.1 1.3 90 225-314 60-164 (185)
156 4h09_A Hypothetical leucine ri 98.5 3.9E-05 1.3E-09 70.7 23.7 65 97-167 57-122 (379)
157 4h09_A Hypothetical leucine ri 98.3 6.7E-05 2.3E-09 69.1 20.8 131 201-335 212-343 (379)
158 3rw6_A Nuclear RNA export fact 98.3 3.8E-07 1.3E-11 79.6 5.0 80 131-212 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 2.3E-06 8E-11 69.4 4.1 34 231-264 115-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 8.7E-11 69.2 3.5 82 231-312 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 8.2E-06 2.8E-10 67.5 4.9 111 227-337 38-169 (197)
162 3rfe_A Platelet glycoprotein I 97.8 1.3E-05 4.5E-10 61.9 3.9 59 305-366 12-73 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 2.6E-05 8.9E-10 64.5 1.4 89 225-313 65-169 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0035 1.2E-07 48.1 6.5 58 257-315 11-69 (130)
165 2lz0_A Uncharacterized protein 43.6 29 0.00099 24.5 4.2 38 104-143 15-52 (100)
166 2lz0_A Uncharacterized protein 42.2 86 0.0029 21.9 6.7 13 177-189 38-50 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-49 Score=360.16 Aligned_cols=303 Identities=32% Similarity=0.631 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCCC-CccceEeCCCC--CcEEEEEcCCCCCchhhhhccCCCccee--
Q 017578 26 CCPPSERAALLAFKAALHEPYLGIFNSWT-GNDCCH-NWYGVSCDQET--HRVADINLRGESEDPIFQRAHRTGYMTG-- 99 (369)
Q Consensus 26 ~~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~-~w~gv~C~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~-- 99 (369)
.|.++|++||++||+++.++. .+.+|. +.+||. .|.||+|+..+ ++|+.|++++ +.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-------------~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------LNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-------------CCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-------------CCccCCc
Confidence 589999999999999997543 688997 567773 39999998654 7999999998 56666
Q ss_pred ecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcccc
Q 017578 100 YISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIA 179 (369)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 179 (369)
.+|+.+.++++|++|++++++.+.+.+|..|.++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 56666666666666666522445555555555555555555555555544555555555555555555555444444444
Q ss_pred CCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCC-CCCEEEeecCCcccccchhhhCCCCCcE
Q 017578 180 NLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIY-RLADLDLSMNQISGMIPASLGKMAVLAT 258 (369)
Q Consensus 180 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 258 (369)
++ ++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |++
T Consensus 147 ~l------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 147 SL------------------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GC------------------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred cC------------------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 44 4455555555554444555555554 555555555555555555555554 666
Q ss_pred EeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 259 LNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 259 L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
|++++|.+++..|..+.. ++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 666666666555555544 6677777777777655554 67789999999999999999999999999999999999999
Q ss_pred ceeCCCCCCCCCccccccccCCCcccCCCCCC
Q 017578 338 CGRIPDGSPFDHLEASSFAYNKCLCGKPLRAC 369 (369)
Q Consensus 338 ~g~ip~~~~~~~L~~l~l~~N~~~c~~~l~~~ 369 (369)
+|.+|....+++|+.+++.+|+++||.|++.|
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 99999988899999999999999999999988
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.7e-44 Score=361.78 Aligned_cols=329 Identities=25% Similarity=0.359 Sum_probs=226.4
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCCCCccceEeCCCCCcEEEEEcCCCCCchh---hh----hc--
Q 017578 22 SVVNCCPPSERAALLAFKAALHEPYLGIFNSWT-GNDCCHNWYGVSCDQETHRVADINLRGESEDPI---FQ----RA-- 91 (369)
Q Consensus 22 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~---~~----~~-- 91 (369)
++++++.++|++||++||+++.++ . .+++|. +++||. |.||+|+ .+||++|||++....+. +. .+
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~-~-~l~~W~~~~~~C~-w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDK-N-LLPDWSSNKNPCT-FDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCT-T-SSTTCCTTSCGGG-STTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CccccCCHHHHHHHHHHHhhCCCc-c-cccCCCCCCCCcC-CcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 344556789999999999999854 4 789997 778886 9999998 57999999998554332 11 01
Q ss_pred -c-CCCccee--ecCccccCCCCCCEEecCCCCCCccccCc--cCCCCCCCCEEEcCCCcCcccCChhc-cCCCCCCEEE
Q 017578 92 -H-RTGYMTG--YISPAVCKLTRLSSLTLADWKGITGEIPR--CISSIPFLRILDLIGNKLSGDIPRDI-GRLHRLAVLN 164 (369)
Q Consensus 92 -~-~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~ 164 (369)
. ..+...+ .+|+.++++++|++|++++ +.+.+.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSR-NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCS-SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCC-CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 0 0111222 2346677777888888874 667777776 67777778888888777776666654 6777777777
Q ss_pred eecCcCCCcCCcc---ccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCC
Q 017578 165 IADNNISGAIPPS---IANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQ 241 (369)
Q Consensus 165 L~~n~~~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 241 (369)
+++|.+++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|. ++.+++|++|++++|.
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence 7777777665555 5667777777777777665443 26677777777777777766665 7777777777777777
Q ss_pred cccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCC-CCCCEEEeeCCcccccchhh
Q 017578 242 ISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPR-SYFTAIDLAYNKLSGSIPRT 320 (369)
Q Consensus 242 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~ 320 (369)
+++.+|..++.+++|++|++++|.+++.+|.. ..++|++|++++|.+++.+|..+... ++|++|++++|++++.+|..
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 77777777777777777777777777666554 22667777777777766666666553 66777777777776666666
Q ss_pred ccCCCCCCEEEcccCcCceeCCC--CCCCCCccccccccCCC
Q 017578 321 LSAASYIGHLDFSHNYLCGRIPD--GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 321 l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~L~~l~l~~N~~ 360 (369)
+..+++|++|++++|+++|.+|. ...+++|+.|++++|..
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 66666677777776666666664 34556666666666543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-42 Score=347.24 Aligned_cols=274 Identities=35% Similarity=0.570 Sum_probs=260.2
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
|.+.+.+|..+.++++|++|++++ +.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CccccccCHHHhcCCCCCEEECcC-CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 888999999999999999999995 8888899999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhh---
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLG--- 251 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--- 251 (369)
|..+.++++|++|++++|++.+.+|..++.+++|++|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877776543
Q ss_pred -------------------------------------------------------------------CCCCCcEEeccCC
Q 017578 252 -------------------------------------------------------------------KMAVLATLNLDFN 264 (369)
Q Consensus 252 -------------------------------------------------------------------~l~~L~~L~L~~n 264 (369)
.+++|++|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 3467899999999
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
+++|.+|..+.. +.|+.|+|++|+++|.+|..++.+++|++|+|++|+++|.+|..+..+++|++|+|++|+++|.||.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCcccCCCCCC
Q 017578 344 GSPFDHLEASSFAYNKCLCGKPLRAC 369 (369)
Q Consensus 344 ~~~~~~L~~l~l~~N~~~c~~~l~~~ 369 (369)
..+|..+...++.|||.+||.|++.|
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred chhhccCCHHHhcCCchhcCCCCcCC
Confidence 99999999999999999999999988
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.4e-43 Score=347.70 Aligned_cols=316 Identities=23% Similarity=0.327 Sum_probs=190.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCC-------CCCC-CCCCCCCc---cceEeCCCCCcEEEEEcCCCCCchhhhhccCC
Q 017578 26 CCPPSERAALLAFKAALHEPYLGIF-------NSWT-GNDCCHNW---YGVSCDQETHRVADINLRGESEDPIFQRAHRT 94 (369)
Q Consensus 26 ~~~~~~~~~ll~~~~~~~~~~~~~~-------~~W~-~~~~c~~w---~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~ 94 (369)
+....|++||.++++++..+.+... .+|. +.+||. | .||+|+.. +||++|+|++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~-w~~~~GV~C~~~-~~V~~L~L~~------------- 90 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDM-WGAQPGVSLNSN-GRVTGLSLEG------------- 90 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGG-TTCCTTEEECTT-CCEEEEECTT-------------
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCccc-ccCCCCeEEcCC-CCEEEEEecC-------------
Confidence 3445799999999999877654432 3798 678886 9 99999865 7999999999
Q ss_pred CcceeecCccccCCCCCCEEecCCCC------------------------------------------------------
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWK------------------------------------------------------ 120 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~------------------------------------------------------ 120 (369)
+.+.|.+|+.++++++|++|+++++.
T Consensus 91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l 170 (636)
T 4eco_A 91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170 (636)
T ss_dssp SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCT
T ss_pred cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCc
Confidence 56666666666666666666665421
Q ss_pred -----------------------CCccccCccCCCCCCCCEEEcCCCcCccc-----------------CChhcc--CCC
Q 017578 121 -----------------------GITGEIPRCISSIPFLRILDLIGNKLSGD-----------------IPRDIG--RLH 158 (369)
Q Consensus 121 -----------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~ 158 (369)
.+++ +|..++++++|++|++++|.+++. +|..++ +++
T Consensus 171 ~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 171 QQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred cccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC
Confidence 2223 555566666666666666666653 666665 666
Q ss_pred CCCEEEeecCcCCCcCCccccCCCCCcEEEcccCc-cCC-CCCCcccCC------CCCCEEEcccccCCccCCc--hhcC
Q 017578 159 RLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR-ISG-PIPGSVGRL------RMMSRALLSRNQISGTIPS--SISM 228 (369)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~ 228 (369)
+|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 66666666666666666666666666666666665 555 455544443 55555555555555 4555 5555
Q ss_pred CCCCCEEEeecCCcccccc----------------------hhhhCCCC-CcEEeccCCcCcCCCCccccc---CCCCEE
Q 017578 229 IYRLADLDLSMNQISGMIP----------------------ASLGKMAV-LATLNLDFNKLSGPIPASLMN---SGISNL 282 (369)
Q Consensus 229 l~~L~~L~l~~n~l~~~~~----------------------~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~---~~L~~L 282 (369)
+++|++|++++|.++|.+| ..+..+++ |++|++++|.++ .+|..+.. ++|++|
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 5555555555555554444 44444444 555555555554 44443332 245555
Q ss_pred EcccCcCcccCCcccC-------CCCCCCEEEeeCCcccccchhh-ccCCCCCCEEEcccCcCceeCCCCC-C-------
Q 017578 283 NLSRNMLEGKIPDVFG-------PRSYFTAIDLAYNKLSGSIPRT-LSAASYIGHLDFSHNYLCGRIPDGS-P------- 346 (369)
Q Consensus 283 ~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~~-~------- 346 (369)
++++|.+++.+|..+. .+++|++|++++|+++ .+|.. +..+++|++|++++|+++ .+|... .
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK 485 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccc
Confidence 5555555555555554 4555666666666665 33333 334566666666666666 455421 0
Q ss_pred -CCCccccccccCCCc
Q 017578 347 -FDHLEASSFAYNKCL 361 (369)
Q Consensus 347 -~~~L~~l~l~~N~~~ 361 (369)
+++|+.|++++|...
T Consensus 486 ~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TGGGCCEEECCSSCCC
T ss_pred ccCCccEEECcCCcCC
Confidence 116666666666544
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-40 Score=337.63 Aligned_cols=310 Identities=24% Similarity=0.395 Sum_probs=215.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCCCCCCC------CCCC--CCCc------------cceEeCCCCCcEEEEEcCCCC
Q 017578 24 VNCCPPSERAALLAFKAALHEPYLGIFNSWT------GNDC--CHNW------------YGVSCDQETHRVADINLRGES 83 (369)
Q Consensus 24 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~W~------~~~~--c~~w------------~gv~C~~~~~~v~~l~l~~~~ 83 (369)
++++..+|++||++||+++.++ +|. ..++ |. | .||+|+. .+||++|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~-W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCS-CCCSSCGGGTTCCTTEEECT-TSCEEEEECTT--
T ss_pred ccccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccc-cccccccccccCcCceEecC-CCCEEEEECcc--
Confidence 3445678999999999999764 564 2345 75 9 9999987 57999999999
Q ss_pred CchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccc--------------------------------------
Q 017578 84 EDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGE-------------------------------------- 125 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------------------------- 125 (369)
+.+.|.+|+.++++++|++|+|++++.+.|.
T Consensus 333 -----------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 333 -----------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp -----------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred -----------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 7788888888888888888888223432222
Q ss_pred --------------------------------------cCccCCCCCCCCEEEcCCCcCcc-----------------cC
Q 017578 126 --------------------------------------IPRCISSIPFLRILDLIGNKLSG-----------------DI 150 (369)
Q Consensus 126 --------------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~ 150 (369)
+|..|+++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 67777788888888888888886 37
Q ss_pred Chhcc--CCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCc-cCC-CCCCcccCCC-------CCCEEEcccccCC
Q 017578 151 PRDIG--RLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR-ISG-PIPGSVGRLR-------MMSRALLSRNQIS 219 (369)
Q Consensus 151 p~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~ 219 (369)
|..++ ++++|++|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++ +|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77776 88888888888888777888888888888888888887 766 5665444433 7777777777777
Q ss_pred ccCCc--hhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CC-CCEEEcccCcCcccCCc
Q 017578 220 GTIPS--SISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SG-ISNLNLSRNMLEGKIPD 295 (369)
Q Consensus 220 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~-L~~L~L~~n~l~~~~~~ 295 (369)
.+|. .+..+++|+.|++++|.++ .+| .++.+++|++|++++|.++ .+|..+.. ++ |++|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 6666 6777777777777777776 556 6666667777777777666 55555544 55 666666666666 4454
Q ss_pred ccCCCC-------------------------------CCCEEEeeCCcccccchhhc-cCCCCCCEEEcccCcCceeCCC
Q 017578 296 VFGPRS-------------------------------YFTAIDLAYNKLSGSIPRTL-SAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 296 ~~~~~~-------------------------------~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
.+...+ +|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 444332 4555555555555 344433 36677777777777777 5555
Q ss_pred CC-C--------CCCccccccccCCCc
Q 017578 344 GS-P--------FDHLEASSFAYNKCL 361 (369)
Q Consensus 344 ~~-~--------~~~L~~l~l~~N~~~ 361 (369)
.. . +++|+.|++++|...
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred HHhccccccccccCCccEEECCCCCCc
Confidence 21 1 126777777777654
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-37 Score=295.45 Aligned_cols=281 Identities=20% Similarity=0.217 Sum_probs=198.4
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccc-CccCCCCCCCCEEEcCCCcCcccC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEI-PRCISSIPFLRILDLIGNKLSGDI 150 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~ 150 (369)
.+++.|++++ +.+.+..|..+.++++|++|++++ +.+.+.+ +..|.++++|++|++++|.+++..
T Consensus 30 ~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDLSL-------------NSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp TTCCEEECCS-------------SCCCEECTTTTSSCTTCCEEECCC-CSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred CccCEEEecC-------------CccCcCChhHhccCccccEEECcC-CcccceECcccccccccCCEEeCCCCccCccC
Confidence 4789999998 555555555566666666666653 4443333 334555666666666666655545
Q ss_pred ChhccCCCCCCEEEeecCcCCCcCCcc--ccCCCCCcEEEcccCccCCCCCCc-ccCCCCCCEEEcccccCCccCCchhc
Q 017578 151 PRDIGRLHRLAVLNIADNNISGAIPPS--IANLSSLMHLDLRNNRISGPIPGS-VGRLRMMSRALLSRNQISGTIPSSIS 227 (369)
Q Consensus 151 p~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~ 227 (369)
|..++++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 555555566666666655555433332 555555555555555555444443 45555555555555555443333222
Q ss_pred C-------------------------------------------------------------------------------
Q 017578 228 M------------------------------------------------------------------------------- 228 (369)
Q Consensus 228 ~------------------------------------------------------------------------------- 228 (369)
.
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 1
Q ss_pred ------------------CCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcC
Q 017578 229 ------------------IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNML 289 (369)
Q Consensus 229 ------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 289 (369)
.++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+.. ++|++|++++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 135666777777777667778888999999999999999777777766 9999999999999
Q ss_pred cccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCC
Q 017578 290 EGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 290 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+. ...+++|+.|++++|++.|+|+.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 988889999999999999999999988899999999999999999999965443 35789999999999999999983
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.5e-36 Score=278.11 Aligned_cols=270 Identities=16% Similarity=0.193 Sum_probs=199.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCCCCC----C-CCCCCCCccceEeCC--------CCCcEEEEEcCCCCCchhhhhc
Q 017578 25 NCCPPSERAALLAFKAALHEPYLGIFNSW----T-GNDCCHNWYGVSCDQ--------ETHRVADINLRGESEDPIFQRA 91 (369)
Q Consensus 25 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~W----~-~~~~c~~w~gv~C~~--------~~~~v~~l~l~~~~~~~~~~~~ 91 (369)
..+..+|++||++||+++..++.++..+| . ..++|. |.|+.|+. ...+|+.|++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~-~~g~~~~~~~~~l~~~~~~~l~~L~L~~---------- 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET-RTGRALKATADLLEDATQPGRVALELRS---------- 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC-SHHHHHHHHHHHHHHHTSTTCCEEEEES----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc-cCCcchhhhHHHHhcccccceeEEEccC----------
Confidence 34567899999999999866666677788 3 556776 99999953 123555555555
Q ss_pred cCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCC
Q 017578 92 HRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNIS 171 (369)
Q Consensus 92 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~ 171 (369)
+.+. .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus 91 ----------------------------n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 91 ----------------------------VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp ----------------------------SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC
T ss_pred ----------------------------CCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc
Confidence 3333 34444555555555555555555 45555555555555555555555
Q ss_pred CcCCccccCCCCCcEEEcccCccCCCCCCcc---------cCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCc
Q 017578 172 GAIPPSIANLSSLMHLDLRNNRISGPIPGSV---------GRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQI 242 (369)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 242 (369)
.+|..+.++++|++|++++|.+.+.+|..+ ..+++|++|++++|+++ .+|..+..+++|++|++++|.+
T Consensus 141 -~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 141 -ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred -cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 555555555555555555555555555544 34888888888888888 7788888888999999999988
Q ss_pred ccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhc
Q 017578 243 SGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTL 321 (369)
Q Consensus 243 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 321 (369)
++ +|..++.+++|++|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 84 6667888899999999998888888887776 889999999998888899889999999999999999999999999
Q ss_pred cCCCCCCEEEcccCcCc
Q 017578 322 SAASYIGHLDFSHNYLC 338 (369)
Q Consensus 322 ~~l~~L~~L~ls~N~l~ 338 (369)
.++++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 99999999999877654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=283.45 Aligned_cols=291 Identities=18% Similarity=0.177 Sum_probs=220.2
Q ss_pred ccceEeCCC---------CCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCC
Q 017578 62 WYGVSCDQE---------THRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISS 132 (369)
Q Consensus 62 w~gv~C~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~ 132 (369)
|..|.|... ..+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~-------------n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~ 78 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGK-------------NRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNN 78 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCS-------------SCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCC-------------CccceECHhHccCCCCCCEEECCC-CccCEeChhhhhC
Confidence 567777532 24677888888 677777777788888888888884 6777666777888
Q ss_pred CCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEE
Q 017578 133 IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRAL 212 (369)
Q Consensus 133 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 212 (369)
+++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 88888888888888744444567788888888888888766677777788888888888877766677777777777777
Q ss_pred cccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCC------------------------CCcEEeccCCcCcC
Q 017578 213 LSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMA------------------------VLATLNLDFNKLSG 268 (369)
Q Consensus 213 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~------------------------~L~~L~L~~n~l~~ 268 (369)
+++|.+++..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 777777765555666667777777776666654444454444 45555555566653
Q ss_pred CCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCC
Q 017578 269 PIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSP 346 (369)
Q Consensus 269 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~ 346 (369)
..+..+.. ++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+. ...
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 22233444 8899999999999988888899999999999999999988899999999999999999999965443 346
Q ss_pred CCCccccccccCCCcccCCC
Q 017578 347 FDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 347 ~~~L~~l~l~~N~~~c~~~l 366 (369)
+++|+.|++++||+.|+|++
T Consensus 319 l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 319 VGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp GGGCCEEECCSSCEECSGGG
T ss_pred CcccCEEEccCCCccCccch
Confidence 78999999999999999975
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-34 Score=270.70 Aligned_cols=255 Identities=20% Similarity=0.206 Sum_probs=195.4
Q ss_pred ccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcc-ccCC
Q 017578 103 PAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPS-IANL 181 (369)
Q Consensus 103 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l 181 (369)
..+..+++|++|++++ +.+.+..+..|..+++|++|++++|.+++..|..++++++|++|++++|.++ .+|.. +.++
T Consensus 63 ~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l 140 (390)
T 3o6n_A 63 ALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140 (390)
T ss_dssp HHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred hHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCC
Confidence 3457788888888874 6666666667777888888888888887666666777888888888888877 44443 5777
Q ss_pred CCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcC---------------------------------
Q 017578 182 SSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISM--------------------------------- 228 (369)
Q Consensus 182 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~--------------------------------- 228 (369)
++|++|++++|.+.+..+..+..+++|++|++++|.+++.....+..
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeec
Confidence 88888888888877666667777788888888877776432221111
Q ss_pred ----CCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCC
Q 017578 229 ----IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYF 303 (369)
Q Consensus 229 ----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L 303 (369)
.++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+.. ++|++|++++|++++ +|..+..+++|
T Consensus 221 ~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC
Confidence 23566666666666643 46788899999999999998777777766 899999999999984 56667788999
Q ss_pred CEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCcccCC
Q 017578 304 TAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 304 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
++|++++|++. .+|..+..+++|+.|++++|++++ +| ...+++|+.|++++|++.|+|.
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccchhH
Confidence 99999999998 677778889999999999999984 44 4578999999999999999763
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-34 Score=283.06 Aligned_cols=263 Identities=19% Similarity=0.174 Sum_probs=205.5
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
+.+....+..+.++++|++|++++ +.+.+..|..|..+++|++|++++|.+++..|..++++++|++|+|++|.+++..
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 344443344467788888888885 7777766677888888888888888888766667788888888888888888444
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcC--------------------------
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISM-------------------------- 228 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-------------------------- 228 (369)
+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.....+..
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 444678888888888888888777777888888888888888777532222211
Q ss_pred -----------CCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcc
Q 017578 229 -----------IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDV 296 (369)
Q Consensus 229 -----------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~ 296 (369)
.++|+.|++++|.+++ +..+..+++|++|++++|.+++..|..+.. ++|+.|++++|.+++ +|..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECS
T ss_pred CCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcc
Confidence 1246666666666664 356888999999999999999888887776 999999999999985 5666
Q ss_pred cCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCcccC
Q 017578 297 FGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCGK 364 (369)
Q Consensus 297 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~ 364 (369)
+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++. | ...+++|+.|++++||+.|+|
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 788999999999999998 7888888999999999999999854 3 357899999999999999876
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-33 Score=276.57 Aligned_cols=160 Identities=23% Similarity=0.274 Sum_probs=124.8
Q ss_pred cCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCccc--ccchhhhCCCCCcEEeccCCcCcCCCCcc-ccc-CC
Q 017578 203 GRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISG--MIPASLGKMAVLATLNLDFNKLSGPIPAS-LMN-SG 278 (369)
Q Consensus 203 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~-~~ 278 (369)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +.. ++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 455677777777777777677777777777777777777775 33456777778888888888877655554 333 77
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC--CCCCCCccccccc
Q 017578 279 ISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD--GSPFDHLEASSFA 356 (369)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~L~~l~l~ 356 (369)
|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|. ...+++|+.++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 88888888888776666554 68999999999998 78888889999999999999999 5665 5678999999999
Q ss_pred cCCCcccCCC
Q 017578 357 YNKCLCGKPL 366 (369)
Q Consensus 357 ~N~~~c~~~l 366 (369)
+||+.|+|++
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9999999975
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-34 Score=283.67 Aligned_cols=265 Identities=19% Similarity=0.175 Sum_probs=216.2
Q ss_pred ecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChh-ccCCCCCCEEEeecCcCCCcC--Cc
Q 017578 100 YISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRD-IGRLHRLAVLNIADNNISGAI--PP 176 (369)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~~~~~~--~~ 176 (369)
.+|+.+.++++|++|++++ +.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.. +.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp CCCSSCCSCTTCCEEECTT-CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred CCChhhcccccCCEEECcc-CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 5666677777777777774 6666656666777777777777777776555543 677788888888888777544 56
Q ss_pred cccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCc-hhcCCCCCCEEEeecCCcccccchhhhCCCC
Q 017578 177 SIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPS-SISMIYRLADLDLSMNQISGMIPASLGKMAV 255 (369)
Q Consensus 177 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 255 (369)
.+.++++|++|++++|.+.+..|..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..|..++.+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 677888888888888888777778888888888888888888766554 4788899999999999998888888899999
Q ss_pred CcEEeccCCcCcCC---CCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEE
Q 017578 256 LATLNLDFNKLSGP---IPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLD 331 (369)
Q Consensus 256 L~~L~L~~n~l~~~---~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 331 (369)
|++|++++|.+++. .+..+.. ++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++| +|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 99999999998763 2234444 899999999999998889999999999999999999999999999999999 999
Q ss_pred cccCcCceeCCC-CCCCCCccccccccCCCcccCCC
Q 017578 332 FSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 332 ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
+++|++++.+|. ...+++|+.+++++||+.|+|+.
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999977665 24578999999999999999984
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.2e-35 Score=266.82 Aligned_cols=218 Identities=28% Similarity=0.490 Sum_probs=166.4
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
+.+.+.+|..+.++++|++|++++ +.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC
Confidence 678899999999999999999995 8899899999999999999999999999999999999999999999999999889
Q ss_pred CccccCCC-CCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCC
Q 017578 175 PPSIANLS-SLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKM 253 (369)
Q Consensus 175 ~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 253 (369)
|..+.+++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++..|. +..+
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 98888887 888888888888776666666554 66666665555555555555555555555555544433222 2222
Q ss_pred CCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcc
Q 017578 254 AVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFS 333 (369)
Q Consensus 254 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 333 (369)
++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|.. ..+++|+.++++
T Consensus 244 -----------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 244 -----------------------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp -----------------------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred -----------------------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 56666666666666666777777777777777777777777765 667777777777
Q ss_pred cCc-Cce
Q 017578 334 HNY-LCG 339 (369)
Q Consensus 334 ~N~-l~g 339 (369)
+|+ ++|
T Consensus 300 ~N~~lc~ 306 (313)
T 1ogq_A 300 NNKCLCG 306 (313)
T ss_dssp SSSEEES
T ss_pred CCCCccC
Confidence 776 554
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-32 Score=273.23 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=110.9
Q ss_pred hhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCC-CCccccc-CCCCEEEcccCcCcccCCcccCCCCC
Q 017578 225 SISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP-IPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSY 302 (369)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~ 302 (369)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .|..+.. ++|++|++++|.+++..|..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 344555566666666666655666667777777777777777653 4555555 88888899888888888888889999
Q ss_pred CCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCC-CccccccccCCCcccCCCC
Q 017578 303 FTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFD-HLEASSFAYNKCLCGKPLR 367 (369)
Q Consensus 303 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~-~L~~l~l~~N~~~c~~~l~ 367 (369)
|++|++++|++++..|..+..+++|+.|++++|+++ .+|. ...++ +|+.+++++||+.|+|+++
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999888999999999999999999998 4554 44565 5999999999999999863
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=268.09 Aligned_cols=264 Identities=20% Similarity=0.259 Sum_probs=204.9
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcc-cCChhccCCCCCCEEEeecCcCCC-
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSG-DIPRDIGRLHRLAVLNIADNNISG- 172 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~~~~- 172 (369)
|.+++..|..+.++++|++|++++ +.+. .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++
T Consensus 55 n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 130 (520)
T 2z7x_B 55 NRIQYLDISVFKFNQELEYLDLSH-NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130 (520)
T ss_dssp SCCCEEEGGGGTTCTTCCEEECCS-SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG
T ss_pred CccCCcChHHhhcccCCCEEecCC-Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh
Confidence 677777788888888888888885 6666 45654 78888888888888875 467788888888888888877642
Q ss_pred ------------------------cCCccccCC-----------------------------------------------
Q 017578 173 ------------------------AIPPSIANL----------------------------------------------- 181 (369)
Q Consensus 173 ------------------------~~~~~l~~l----------------------------------------------- 181 (369)
..|..+..+
T Consensus 131 ~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 222222221
Q ss_pred ------------------------------------CCCcEEEcccCccCCCCCCcc-----------------------
Q 017578 182 ------------------------------------SSLMHLDLRNNRISGPIPGSV----------------------- 202 (369)
Q Consensus 182 ------------------------------------~~L~~L~l~~n~l~~~~~~~l----------------------- 202 (369)
++|++|++++|.+.+.+|..+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~ 290 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCS
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceec
Confidence 156666666666665555544
Q ss_pred ------------------------------cCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCccc--ccchhh
Q 017578 203 ------------------------------GRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISG--MIPASL 250 (369)
Q Consensus 203 ------------------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l 250 (369)
..+++|++|++++|++++..|..+..+++|++|++++|.+++ .+|..+
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence 456778888888888887778888888888888888888875 456778
Q ss_pred hCCCCCcEEeccCCcCcCCCCcc-ccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCC
Q 017578 251 GKMAVLATLNLDFNKLSGPIPAS-LMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIG 328 (369)
Q Consensus 251 ~~l~~L~~L~L~~n~l~~~~~~~-~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 328 (369)
+.+++|++|++++|.+++.+|.. +.. ++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 88888888888888888756654 333 8888999999988877776664 78999999999998 8888888999999
Q ss_pred EEEcccCcCceeCCC--CCCCCCccccccccCCCcccCCC
Q 017578 329 HLDFSHNYLCGRIPD--GSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 329 ~L~ls~N~l~g~ip~--~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
+|++++|+++ .+|. ...+++|+.+++++|++.|+|++
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999 5665 45688999999999999999975
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=259.48 Aligned_cols=233 Identities=21% Similarity=0.234 Sum_probs=169.8
Q ss_pred CCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEc
Q 017578 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 213 (369)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 213 (369)
+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 35566666666666545555666666666666666666444455666666666666666666444455666666666666
Q ss_pred ccccCCccCCchhcCCCCCCEEEeecCC-cccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCccc
Q 017578 214 SRNQISGTIPSSISMIYRLADLDLSMNQ-ISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGK 292 (369)
Q Consensus 214 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 292 (369)
++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|.++ .+|.....++|++|++++|.+++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCcc
Confidence 6666665555566777777777777643 33333346777888888888888887 455433238899999999999988
Q ss_pred CCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCCC
Q 017578 293 IPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPLR 367 (369)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l~ 367 (369)
.|..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+. ...+++|+.|++++||+.|+|.++
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 888999999999999999999988888899999999999999999955544 346789999999999999999763
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=5.2e-32 Score=258.81 Aligned_cols=232 Identities=21% Similarity=0.228 Sum_probs=161.2
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLS 214 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 214 (369)
++++|++++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555554445555555555555555555554444555555556666666655554444445556666666666
Q ss_pred cccCCccCCchhcCCCCCCEEEeecC-CcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccC
Q 017578 215 RNQISGTIPSSISMIYRLADLDLSMN-QISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKI 293 (369)
Q Consensus 215 ~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 293 (369)
+|.++...+..+..+++|+.|++++| .+....+..+..+++|++|++++|.+++ +|.....++|++|++++|.+++..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccC
Confidence 66665544555666666777776663 3333333456777888888888888774 343222388999999999998888
Q ss_pred CcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCCC
Q 017578 294 PDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPLR 367 (369)
Q Consensus 294 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l~ 367 (369)
|..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+. ...+++|+.|++++||+.|+|.+.
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 88899999999999999999988888899999999999999999855444 346789999999999999999863
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-32 Score=269.26 Aligned_cols=282 Identities=20% Similarity=0.213 Sum_probs=202.9
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
..++.|||++ |.+++..+.++.++++|++|+|++ +.+.+..+.+|.++++|++|+|++|++++..+
T Consensus 52 ~~~~~LdLs~-------------N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred cCCCEEEeeC-------------CCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4688999999 777766667788888888888884 67776666677888888888888888875444
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCC-CCCCcccCCCCCCEEEcccccCCccCCch-----
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISG-PIPGSVGRLRMMSRALLSRNQISGTIPSS----- 225 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----- 225 (369)
..|.++++|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|++++..+..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 567778888888888888775555567777888888888777764 34566677777777777666543110000
Q ss_pred --------------------------------------------------------------------------------
Q 017578 226 -------------------------------------------------------------------------------- 225 (369)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (369)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----------------------------------------------h---------------------------------
Q 017578 226 ----------------------------------------------I--------------------------------- 226 (369)
Q Consensus 226 ----------------------------------------------l--------------------------------- 226 (369)
+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 0
Q ss_pred ----------cCCCCCCEEEeecCCcc-----------------------------------------------------
Q 017578 227 ----------SMIYRLADLDLSMNQIS----------------------------------------------------- 243 (369)
Q Consensus 227 ----------~~l~~L~~L~l~~n~l~----------------------------------------------------- 243 (369)
..+++|+.++++.|.+.
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 01123333333333221
Q ss_pred ---------------------cccchhhhCCCCCcEEeccCCcCcC-CCCccccc-CCCCEEEcccCcCcccCCcccCCC
Q 017578 244 ---------------------GMIPASLGKMAVLATLNLDFNKLSG-PIPASLMN-SGISNLNLSRNMLEGKIPDVFGPR 300 (369)
Q Consensus 244 ---------------------~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~ 300 (369)
+..+..+..++++++|++++|.+.. ..|..+.. ++|++|+|++|++++..|..|..+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 1112223344556666666665432 34444544 899999999999999999999999
Q ss_pred CCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCC-CCC-CCccccccccCCCcccCCCC
Q 017578 301 SYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDG-SPF-DHLEASSFAYNKCLCGKPLR 367 (369)
Q Consensus 301 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~L~~l~l~~N~~~c~~~l~ 367 (369)
++|++|+|++|++++..|..+..+++|++|+|++|++++.+|.. ..+ ++|+.|++++||+.|+|+++
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999999999999888889999999999999999999888763 344 68999999999999999863
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=253.74 Aligned_cols=260 Identities=19% Similarity=0.208 Sum_probs=209.9
Q ss_pred cCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccC
Q 017578 101 ISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIAN 180 (369)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 180 (369)
+|..+. ++|++|++++ +.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+.+
T Consensus 46 iP~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp CCTTCC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred cccccc--ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 344443 4899999995 7777666667889999999999999998777778889999999999999998443344788
Q ss_pred CCCCcEEEcccCccCCCCC-CcccCCCCCCEEEcccc-cCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcE
Q 017578 181 LSSLMHLDLRNNRISGPIP-GSVGRLRMMSRALLSRN-QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLAT 258 (369)
Q Consensus 181 l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 258 (369)
+++|++|++++|.+....+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999999884433 37888999999999998 466666778888999999999999998888888999999999
Q ss_pred EeccCCcCcCCCCccccc--CCCCEEEcccCcCcccCCccc---CCCCCCCEEEeeCCcccc----cchhhccCCCCCCE
Q 017578 259 LNLDFNKLSGPIPASLMN--SGISNLNLSRNMLEGKIPDVF---GPRSYFTAIDLAYNKLSG----SIPRTLSAASYIGH 329 (369)
Q Consensus 259 L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~ 329 (369)
|++++|.++ .+|..+.. ++|++|++++|.+++..+..+ .....++.++++++.+++ .+|..+..+++|+.
T Consensus 203 L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred ecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 999999886 44444332 889999999999987555433 345678899999998886 47888899999999
Q ss_pred EEcccCcCceeCCCC--CCCCCccccccccCCCcccCC
Q 017578 330 LDFSHNYLCGRIPDG--SPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 330 L~ls~N~l~g~ip~~--~~~~~L~~l~l~~N~~~c~~~ 365 (369)
|++++|+++ .+|.. ..+++|+.+++++|++.|+|+
T Consensus 282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999998 66653 578899999999999999986
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.7e-32 Score=257.38 Aligned_cols=259 Identities=20% Similarity=0.175 Sum_probs=189.0
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecC-ccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYIS-PAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDI 150 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 150 (369)
.+++.|++++ +.+.+.++ ..+.++++|++|++++ +.+.+..|..|+++++|++|++++|.+++.+
T Consensus 54 ~~L~~L~L~~-------------n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 54 QDLQFLKVEQ-------------QTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp TTCCEEECCC-------------CSTTCEECTTTTTTCTTCCEEECTT-CTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred ccccEEECcC-------------CcccceECcccccccccCCEEeCCC-CccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 3677778877 44444442 3455566666666653 5555555555555666666666666555433
Q ss_pred Chh--ccCCCCCCEEEeecCcCCCcCCcc-ccCCCCCcEEEcccCccCCCCCCcccCC----------------------
Q 017578 151 PRD--IGRLHRLAVLNIADNNISGAIPPS-IANLSSLMHLDLRNNRISGPIPGSVGRL---------------------- 205 (369)
Q Consensus 151 p~~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l---------------------- 205 (369)
|.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 333 555556666666666555444443 4555556666655555554433332221
Q ss_pred ---------------------------------------------------------------------------CCCCE
Q 017578 206 ---------------------------------------------------------------------------RMMSR 210 (369)
Q Consensus 206 ---------------------------------------------------------------------------~~L~~ 210 (369)
++|++
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 35666
Q ss_pred EEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcC
Q 017578 211 ALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNML 289 (369)
Q Consensus 211 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 289 (369)
|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 666666666667888999999999999999999888889999999999999999998777777766 9999999999999
Q ss_pred cccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCC
Q 017578 290 EGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDG 344 (369)
Q Consensus 290 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 344 (369)
++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9888999999999999999999999777777889999999999999999998864
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-31 Score=264.32 Aligned_cols=273 Identities=18% Similarity=0.129 Sum_probs=199.0
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
..++.|++++ |.+++..|..+.++++|++|++++ +.+.+..|..|.++++|++|++++|.+++..|
T Consensus 33 ~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSF-------------NVLPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTT-------------CCCSEECTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcCcEEEccC-------------CccCcCChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccCh
Confidence 4788999998 888888888999999999999995 78888888899999999999999999998888
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYR 231 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 231 (369)
..++++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 89999999999999999998665778899999999999999998644445556999999999999998877888888888
Q ss_pred CC--EEEeecCCcccccchhhhCC---------------------------------------------------CCCcE
Q 017578 232 LA--DLDLSMNQISGMIPASLGKM---------------------------------------------------AVLAT 258 (369)
Q Consensus 232 L~--~L~l~~n~l~~~~~~~l~~l---------------------------------------------------~~L~~ 258 (369)
|+ .|++++|.+++..|..+... .+|++
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 88 78888887775544333210 04555
Q ss_pred EeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 259 LNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 259 L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
|++++|.+++..+..+.. ++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 555555555444443443 56666666666665 4555556666666666666666655555555555556666655555
Q ss_pred ceeCCC--CCCCCCccccccccCC
Q 017578 338 CGRIPD--GSPFDHLEASSFAYNK 359 (369)
Q Consensus 338 ~g~ip~--~~~~~~L~~l~l~~N~ 359 (369)
.+.+|. ...+++|+.|++++|.
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSC
T ss_pred ccccchhhhhccCcCCEEECCCCc
Confidence 555543 2344555555555554
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-32 Score=264.86 Aligned_cols=284 Identities=20% Similarity=0.213 Sum_probs=204.5
Q ss_pred CCCccceEeCCC-----------CCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccC
Q 017578 59 CHNWYGVSCDQE-----------THRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIP 127 (369)
Q Consensus 59 c~~w~gv~C~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p 127 (369)
|. |.|+ |+.. ..+++.|++++ +.+++..|..+.++++|++|++++ +.+.+..|
T Consensus 4 C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~ 67 (549)
T 2z81_A 4 CD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF-------------NKITYIGHGDLRACANLQVLILKS-SRINTIEG 67 (549)
T ss_dssp EC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCS-------------SCCCEECSSTTSSCTTCCEEECTT-SCCCEECT
T ss_pred CC-CCce-EECCCCccccccccCCCCccEEECcC-------------CccCccChhhhhcCCcccEEECCC-CCcCccCh
Confidence 54 8887 7642 23688899988 888888888999999999999995 88888788
Q ss_pred ccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCC-cCCccccCCCCCcEEEcccCccCCCCC-CcccCC
Q 017578 128 RCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISG-AIPPSIANLSSLMHLDLRNNRISGPIP-GSVGRL 205 (369)
Q Consensus 128 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l 205 (369)
..|..+++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 889999999999999999997666669999999999999999985 456788999999999999998544544 678999
Q ss_pred CCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchh-hhCCCCCcEEeccCCcCcC----------------
Q 017578 206 RMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPAS-LGKMAVLATLNLDFNKLSG---------------- 268 (369)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~---------------- 268 (369)
++|++|++++|.+++..|..+..+++|++|+++.|.+.. +|.. +..+++|++|++++|.+++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 999999999999988777777665555555544444331 2221 1223333344333333332
Q ss_pred --------------------------------------------------------------------------------
Q 017578 269 -------------------------------------------------------------------------------- 268 (369)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (369)
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence
Q ss_pred -----------------CCCcccc-c-CCCCEEEcccCcCcccCC---cccCCCCCCCEEEeeCCcccccch--hhccCC
Q 017578 269 -----------------PIPASLM-N-SGISNLNLSRNMLEGKIP---DVFGPRSYFTAIDLAYNKLSGSIP--RTLSAA 324 (369)
Q Consensus 269 -----------------~~~~~~~-~-~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~l 324 (369)
.+|..+. . ++|++|++++|.+++.+| ..++.+++|++|++++|++++..+ ..+..+
T Consensus 307 ~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 2333332 2 677777777777776553 335677778888888887774332 457777
Q ss_pred CCCCEEEcccCcCceeCCC-CCCCCCccccccccCCC
Q 017578 325 SYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 325 ~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~ 360 (369)
++|++|++++|+++ .+|. ...+++|+.|++++|..
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 88888888888887 4554 34556777777777764
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-32 Score=270.43 Aligned_cols=283 Identities=19% Similarity=0.218 Sum_probs=230.3
Q ss_pred CcEEEEEcCCCC-Cch-h----hhh---------c---c-CCCcceeecCc--cccCCCCCCEEecCCCCCCccccCccC
Q 017578 72 HRVADINLRGES-EDP-I----FQR---------A---H-RTGYMTGYISP--AVCKLTRLSSLTLADWKGITGEIPRCI 130 (369)
Q Consensus 72 ~~v~~l~l~~~~-~~~-~----~~~---------~---~-~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~p~~~ 130 (369)
.+++.|++++.. ..+ . +.. + . ..|.++ .+|. .++++++|++|++++ +.+.|.+| .+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~-N~l~g~ip-~~ 349 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY-NQLEGKLP-AF 349 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS-CCCEEECC-CC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC-CcCccchh-hh
Confidence 378889999865 443 1 111 1 1 235566 7787 888888999999985 78888888 78
Q ss_pred CCCCCCCEEEcCCCcCcccCChhccCCCC-CCEEEeecCcCCCcCCccccCCC--CCcEEEcccCccCCCCCCccc----
Q 017578 131 SSIPFLRILDLIGNKLSGDIPRDIGRLHR-LAVLNIADNNISGAIPPSIANLS--SLMHLDLRNNRISGPIPGSVG---- 203 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~---- 203 (369)
..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|++|++++|.+.+..|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 88888999999999888 78888888888 999999999988 7888776654 899999999999888888887
Q ss_pred ---CCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhC-C-------CCCcEEeccCCcCcCCCCc
Q 017578 204 ---RLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK-M-------AVLATLNLDFNKLSGPIPA 272 (369)
Q Consensus 204 ---~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l-------~~L~~L~L~~n~l~~~~~~ 272 (369)
.+++|++|++++|.++...+..+..+++|++|++++|.++ .+|..... . ++|++|++++|.++ .+|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 7789999999999998443444567899999999999998 55554332 2 28999999999998 7787
Q ss_pred ccc--c-CCCCEEEcccCcCcccCCcccCCCCCCCEEEe------eCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 273 SLM--N-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDL------AYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 273 ~~~--~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L------~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
.+. . ++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 775 4 999999999999997 8888999999999999 56788889999999999999999999999 68887
Q ss_pred CCCCCCccccccccCCCcccC
Q 017578 344 GSPFDHLEASSFAYNKCLCGK 364 (369)
Q Consensus 344 ~~~~~~L~~l~l~~N~~~c~~ 364 (369)
. .+++|+.|++++|+..|-.
T Consensus 584 ~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 K-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp C-CCTTCCEEECCSCTTCEEE
T ss_pred h-HhCcCCEEECcCCCCcccc
Confidence 4 3489999999999987743
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=4.1e-31 Score=259.64 Aligned_cols=272 Identities=24% Similarity=0.222 Sum_probs=179.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCC-c
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISG-A 173 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~-~ 173 (369)
+.+.+..+..+.++++|++|++++ +.+.+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .
T Consensus 62 n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 62 CEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCccCcccccCchhCCEEeCcC-CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence 556666566677788888888874 66666666777788888888888887774444457788888888888888875 4
Q ss_pred CCccccCCCCCcEEEcccCccCCCCCCc----------------------------------------------------
Q 017578 174 IPPSIANLSSLMHLDLRNNRISGPIPGS---------------------------------------------------- 201 (369)
Q Consensus 174 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~---------------------------------------------------- 201 (369)
+|..++++++|++|++++|.+.+..+..
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence 6788888888888888877654322111
Q ss_pred ---------------------------------------------------------ccCCCCCCEEEcccccC------
Q 017578 202 ---------------------------------------------------------VGRLRMMSRALLSRNQI------ 218 (369)
Q Consensus 202 ---------------------------------------------------------l~~l~~L~~L~l~~n~~------ 218 (369)
+..+++|++|++.+|.+
T Consensus 221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 300 (570)
T 2z63_A 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300 (570)
T ss_dssp HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC
T ss_pred hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh
Confidence 11122233333322222
Q ss_pred -----------------------------------------------------------CccC--CchhcCCCCCCEEEe
Q 017578 219 -----------------------------------------------------------SGTI--PSSISMIYRLADLDL 237 (369)
Q Consensus 219 -----------------------------------------------------------~~~~--~~~l~~l~~L~~L~l 237 (369)
++.. +..+..+++|++|++
T Consensus 301 ~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred hccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 1110 122233333444444
Q ss_pred ecCCcccc-----------------------cc-hhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCc-c
Q 017578 238 SMNQISGM-----------------------IP-ASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLE-G 291 (369)
Q Consensus 238 ~~n~l~~~-----------------------~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~ 291 (369)
++|.+.+. .+ ..+..+++|++|++++|.+.+..|..+.. ++|++|++++|.++ +
T Consensus 381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 44433321 11 12344445555555555555444444444 67777777777776 4
Q ss_pred cCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCCC
Q 017578 292 KIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPLR 367 (369)
Q Consensus 292 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l~ 367 (369)
.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. ...+++|+.+++++|++.|+|+..
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 6777888888889999999988887788899999999999999999977665 457889999999999999999864
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=256.94 Aligned_cols=280 Identities=17% Similarity=0.174 Sum_probs=202.6
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|+|++ |.+.+..|..+.++++|++|++++ +.+....+..|.++++|++|++++|.+.+..|
T Consensus 56 ~~L~~L~L~~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 56 PHLEELELNE-------------NIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCEEECCC-------------CccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 4678888888 666666677777777777777774 55664444456777777777777777776666
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhc----
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSIS---- 227 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~---- 227 (369)
..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++.+|.+.+..+..+.
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 6667777777777777777655566666666777777766666644444455555555555555555544333333
Q ss_pred --------------------CCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEccc
Q 017578 228 --------------------MIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSR 286 (369)
Q Consensus 228 --------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 286 (369)
...+|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 3346666677777777544467889999999999999999766666666 9999999999
Q ss_pred CcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCcccCC
Q 017578 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 287 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...-+....+.....+.+.++...|..|
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999999999999999999999999999877778899999999999999987543321112233445666777777665
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=4.8e-31 Score=270.41 Aligned_cols=284 Identities=20% Similarity=0.202 Sum_probs=190.6
Q ss_pred ccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccc-CccCCCCCCCCEEE
Q 017578 62 WYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEI-PRCISSIPFLRILD 140 (369)
Q Consensus 62 w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-p~~~~~l~~L~~L~ 140 (369)
|..|-+ -..+++.|||++ |.+++..+..+.++++|++|++++ +...+.+ |..|.++++|++|+
T Consensus 16 L~~vP~--lp~~l~~LdLs~-------------N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSF-------------NYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp SSCCCS--SCTTCCEEEEES-------------CCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEE
T ss_pred CCCCCC--CCCCcCEEECCC-------------CcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEE
Confidence 666665 345889999999 777777788888888888888885 4444444 67788888888888
Q ss_pred cCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcc--ccCCCCCcEEEcccCccCCCCC-CcccCCCCCCEEEccccc
Q 017578 141 LIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPS--IANLSSLMHLDLRNNRISGPIP-GSVGRLRMMSRALLSRNQ 217 (369)
Q Consensus 141 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~ 217 (369)
|++|.+.+..|..++++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 8888888777888888888888888888887656654 7788888888888888876544 467888888888888888
Q ss_pred CCccCCchhcCC--CCCCEEEeecCCcccccchhhhCC------------------------------------------
Q 017578 218 ISGTIPSSISMI--YRLADLDLSMNQISGMIPASLGKM------------------------------------------ 253 (369)
Q Consensus 218 ~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l------------------------------------------ 253 (369)
+++..+..+..+ ++|+.|+++.|.+.+..|..++.+
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 877666665544 455555555555444433333322
Q ss_pred --------------------------CCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEE
Q 017578 254 --------------------------AVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAI 306 (369)
Q Consensus 254 --------------------------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 306 (369)
++|++|++++|.+.+..+..+.. ++|+.|++++|.+++..|..+..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 34555555555555444444443 556666666666665555566666666666
Q ss_pred EeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCc
Q 017578 307 DLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 307 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~ 361 (369)
++++|++++..|..+..+++|+.|++++|++.+..+. ...+++|+.|++++|...
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 6666666655566666666666666666666543332 334566666666666543
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=2.6e-31 Score=266.62 Aligned_cols=271 Identities=23% Similarity=0.250 Sum_probs=219.3
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccc-cC-ccCCC--CCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGE-IP-RCISS--IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNI 170 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~p-~~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~ 170 (369)
+.+.+..+..+..+++|++|++++ +.+... ++ ..+.. .+.|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTT-CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCChhHhccccCCcEEECCC-CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 555555556667777777777764 332211 11 12222 24677777788888877778888999999999999998
Q ss_pred CCcCC-ccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCC--ccCCchhcCCCCCCEEEeecCCcccccc
Q 017578 171 SGAIP-PSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQIS--GTIPSSISMIYRLADLDLSMNQISGMIP 247 (369)
Q Consensus 171 ~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 247 (369)
++.+| ..+.++++|++|++++|.+.+..+..+..+++|+.|++.+|.+. +..|..+..+++|++|++++|.+++..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 87666 57888999999999999988888888999999999999999886 5678899999999999999999998777
Q ss_pred hhhhCCCCCcEEeccCCcCcCCCCc--------cccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccch
Q 017578 248 ASLGKMAVLATLNLDFNKLSGPIPA--------SLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIP 318 (369)
Q Consensus 248 ~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 318 (369)
..+..+++|++|++++|.+++..+. .+.. ++|++|++++|+++...+..+..+++|+.|++++|++++..+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 8899999999999999999854221 1333 899999999999996556679999999999999999997666
Q ss_pred hhccCCCCCCEEEcccCcCceeCCCC-C-CCCCccccccccCCCcccCCC
Q 017578 319 RTLSAASYIGHLDFSHNYLCGRIPDG-S-PFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 319 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~-~~~~L~~l~l~~N~~~c~~~l 366 (369)
..+..+++|+.|++++|++++..|.. . .+++|+.+++++||+.|+|+.
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 77889999999999999999766542 2 578999999999999999985
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.3e-30 Score=238.85 Aligned_cols=236 Identities=23% Similarity=0.320 Sum_probs=118.2
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
+.+++..+..+.++++|++|++++ +.+.+..|..|..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 62 NKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVR 137 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBC
T ss_pred CcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccC
Confidence 444444444455555555555553 4444444555555555555555555555 3443332 45555555555555433
Q ss_pred CccccCCCCCcEEEcccCccCC--CCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhC
Q 017578 175 PPSIANLSSLMHLDLRNNRISG--PIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 252 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 252 (369)
+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 3445555555555555555432 344445555555555555555542 333222 45555555555555444555555
Q ss_pred CCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccC------CC
Q 017578 253 MAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSA------AS 325 (369)
Q Consensus 253 l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~ 325 (369)
+++|++|++++|.+++..+..+.. ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.. .+
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 555555555555555444333333 55555555555555 44444555555555555555555433333321 24
Q ss_pred CCCEEEcccCcCc
Q 017578 326 YIGHLDFSHNYLC 338 (369)
Q Consensus 326 ~L~~L~ls~N~l~ 338 (369)
+++.|++++|.+.
T Consensus 294 ~l~~l~l~~N~~~ 306 (330)
T 1xku_A 294 SYSGVSLFSNPVQ 306 (330)
T ss_dssp CCSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 4555555555543
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=239.47 Aligned_cols=220 Identities=25% Similarity=0.347 Sum_probs=98.4
Q ss_pred CCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEc
Q 017578 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 189 (369)
Q Consensus 110 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 189 (369)
+|++|++++ +.+.+..|..|.++++|++|++++|.+++..|..++++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 55 ~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 444444442 3344333344444444444444444444333444444444444444444444 3333332 44444444
Q ss_pred ccCccCCCCCCcccCCCCCCEEEcccccCCc--cCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCc
Q 017578 190 RNNRISGPIPGSVGRLRMMSRALLSRNQISG--TIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 190 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 267 (369)
++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+++ +|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 4444443333334444444444444444431 333334333 44444444444442 232221 34444444444444
Q ss_pred CCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCc
Q 017578 268 GPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 268 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
+..+..+.. ++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 333333333 44444444444444444444444444444444444444 44444444444444444444444
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.5e-30 Score=257.59 Aligned_cols=124 Identities=27% Similarity=0.306 Sum_probs=79.0
Q ss_pred CcEEEEEcCCCCCchh----hhh------cc-CCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEE
Q 017578 72 HRVADINLRGESEDPI----FQR------AH-RTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILD 140 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~----~~~------~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 140 (369)
.+++.|++++...... +.. +. ..|.+.+..|..+.++++|++|++++ +.+.+..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC-CcccccChhhcCCcccCCEEE
Confidence 5788899988433211 111 11 22455555566666777777777764 566655566677777777777
Q ss_pred cCCCcCcccCChhccCCCCCCEEEeecCcCCC-cCCccccCCCCCcEEEcccCccCC
Q 017578 141 LIGNKLSGDIPRDIGRLHRLAVLNIADNNISG-AIPPSIANLSSLMHLDLRNNRISG 196 (369)
Q Consensus 141 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~ 196 (369)
+++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 77777765554566777777777777777664 456777777777777777766554
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=258.07 Aligned_cols=127 Identities=22% Similarity=0.258 Sum_probs=104.0
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|++++ +.+.+..|..+.++++|++|++++ +.+.+..|..|.++++|++|++++|.++ .+|
T Consensus 21 ~~L~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 21 QKTTILNISQ-------------NYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp TTCSEEECCS-------------SCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred ccccEEECCC-------------CcccccChhhccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence 4788999999 788887778999999999999995 8888888899999999999999999999 677
Q ss_pred hhccCCCCCCEEEeecCcCCC-cCCccccCCCCCcEEEcccCccCCCCCCcccCCCCC--CEEEcccccC
Q 017578 152 RDIGRLHRLAVLNIADNNISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM--SRALLSRNQI 218 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~ 218 (369)
.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 66 89999999999999986 578899999999999999988753 223333333 4444444444
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-30 Score=237.89 Aligned_cols=246 Identities=22% Similarity=0.260 Sum_probs=216.7
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEE
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLD 188 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 188 (369)
+.|++|++++ +.+.+..+..|.++++|++|++++|.+++..|..++.+++|++|++++|.++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 6899999995 7888777778999999999999999999777999999999999999999998 6777665 7999999
Q ss_pred cccCccCCCCCCcccCCCCCCEEEcccccCCc--cCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcC
Q 017578 189 LRNNRISGPIPGSVGRLRMMSRALLSRNQISG--TIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKL 266 (369)
Q Consensus 189 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 266 (369)
+++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 99999997777789999999999999999964 677889999999999999999984 565543 7999999999999
Q ss_pred cCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCC-
Q 017578 267 SGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDG- 344 (369)
Q Consensus 267 ~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~- 344 (369)
++..+..+.. ++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 9877777776 99999999999999888888999999999999999999 88999999999999999999998544331
Q ss_pred ------CCCCCccccccccCCCcc
Q 017578 345 ------SPFDHLEASSFAYNKCLC 362 (369)
Q Consensus 345 ------~~~~~L~~l~l~~N~~~c 362 (369)
...+.++.+++.+||..+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCcccccccccccceEeecCcccc
Confidence 124678899999999865
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.1e-31 Score=239.67 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=181.8
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcc--cCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcE
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSG--DIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMH 186 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 186 (369)
++|++|++++ +.+....+..|.++++|++|++++|.++. ..+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 5788888885 66664333446788888888888888772 23566667888888888888877 56777778888888
Q ss_pred EEcccCccCCCCC-CcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCccc-ccchhhhCCCCCcEEeccCC
Q 017578 187 LDLRNNRISGPIP-GSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISG-MIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 187 L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n 264 (369)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 8888888875544 467778888888888888877777777778888888888887765 46777777778888888888
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCC-CCCEEEcccCcCceeCC
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAAS-YIGHLDFSHNYLCGRIP 342 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip 342 (369)
.+++..|..+.. ++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++.-+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 777665665555 7777777777777766666677777777777777777777777777763 77777777777765422
Q ss_pred C---CCCCCCccccccccCCCcccCC
Q 017578 343 D---GSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 343 ~---~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
. ...+...+.+.+..+...|..|
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred hHHHHHHHHhhhhhhccccccccCCc
Confidence 1 0122334444555566666543
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.7e-30 Score=260.59 Aligned_cols=250 Identities=22% Similarity=0.292 Sum_probs=185.7
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..|+++++|++|++++|.+++..+
T Consensus 25 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTH-------------NQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp TTCSEEECCS-------------SCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEECCC-------------CCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 5788999998 777776667788888888888885 77777777778888888888888888884444
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhc--CC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSIS--MI 229 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l 229 (369)
..|+++++|++|++++|.+++..|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 4688888888888888888866667788888888888888888877777888888888888888888766665553 45
Q ss_pred CCCCEEEeecCCcccccchhhhCC---------------------------CCCcEEeccCCcCcCCCCccccc---CCC
Q 017578 230 YRLADLDLSMNQISGMIPASLGKM---------------------------AVLATLNLDFNKLSGPIPASLMN---SGI 279 (369)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~---~~L 279 (369)
++|++|++++|.+++..|..+..+ ++|++|++++|.+++..|..+.. ++|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 778888888888776666555433 45666777777776666655544 447
Q ss_pred CEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccC
Q 017578 280 SNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335 (369)
Q Consensus 280 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N 335 (369)
++|++++|.+++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 77777777777777777777777777777777777666655555444444444443
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2e-31 Score=241.74 Aligned_cols=209 Identities=19% Similarity=0.239 Sum_probs=103.4
Q ss_pred ccCCCCCCEEecCCCCCCcc--ccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCC-ccccCC
Q 017578 105 VCKLTRLSSLTLADWKGITG--EIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIP-PSIANL 181 (369)
Q Consensus 105 l~~l~~L~~L~l~~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l 181 (369)
+.++++|++|++++ +.+.. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+.++
T Consensus 48 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 48 FDKLTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp TTTCTTCSEEECCS-SCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred hhccccCCEEECCC-CccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhc
Confidence 44555555555553 33331 12333334455555555555554 344445555555555555555542222 244455
Q ss_pred CCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCc-cCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEe
Q 017578 182 SSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISG-TIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLN 260 (369)
Q Consensus 182 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 260 (369)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 555555555555554444445555555555555555543 3444455555555555555555544444555555555555
Q ss_pred ccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCC-CCCEEEeeCCcccc
Q 017578 261 LDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRS-YFTAIDLAYNKLSG 315 (369)
Q Consensus 261 L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~ 315 (369)
+++|.+++..+..+.. ++|++|++++|.+++..|..+..++ +|++|++++|.+++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5555554433333333 5555555555555555555554442 55555555555544
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-30 Score=238.19 Aligned_cols=277 Identities=20% Similarity=0.264 Sum_probs=232.6
Q ss_pred CccceEeCCC---------CCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCC
Q 017578 61 NWYGVSCDQE---------THRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCIS 131 (369)
Q Consensus 61 ~w~gv~C~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~ 131 (369)
.|..+.|... ..+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQN-------------NDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCS-------------SCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGST
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCC-------------CcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhh
Confidence 3888888642 23677888888 778887788999999999999995 888888888999
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccC--CCCCCcccCCCCCC
Q 017578 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRIS--GPIPGSVGRLRMMS 209 (369)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~ 209 (369)
.+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+. +..+..+..+ +|+
T Consensus 100 ~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 9999999999999999 6776665 89999999999999655667899999999999999986 3677778888 999
Q ss_pred EEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCc
Q 017578 210 RALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNM 288 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 288 (369)
+|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|+
T Consensus 176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 99999999985 565544 78999999999999888889999999999999999999777766666 999999999999
Q ss_pred CcccCCcccCCCCCCCEEEeeCCcccccchhhccC------CCCCCEEEcccCcCc--eeCCC-CCCCCCccccccccCC
Q 017578 289 LEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSA------ASYIGHLDFSHNYLC--GRIPD-GSPFDHLEASSFAYNK 359 (369)
Q Consensus 289 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~ls~N~l~--g~ip~-~~~~~~L~~l~l~~N~ 359 (369)
++ .+|..+..+++|++|++++|++++..+..+.. .++|+.|++++|.+. +..|. ...+++|+.+++++|.
T Consensus 253 l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 253 LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred Ce-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99 78888999999999999999999766666654 367899999999987 33332 3457789999998885
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.3e-30 Score=254.94 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=76.1
Q ss_pred hhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcc------------------cCCCCCCCEEEeeC
Q 017578 250 LGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDV------------------FGPRSYFTAIDLAY 310 (369)
Q Consensus 250 l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~------------------~~~~~~L~~L~L~~ 310 (369)
+..+++|++|++++|.++ .+|..+.. ++|++|++++|.+++ +|.. ...+++|++|++++
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence 455555666666666555 34443333 555555555555542 1111 12567778888888
Q ss_pred CcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCC
Q 017578 311 NKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 311 n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
|+++ .+|. ...+++|++|++++|++++.+|. ...+++|+.+++++|++.|+|+
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8887 6665 45788999999999999977775 4578899999999999999997
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.3e-30 Score=235.88 Aligned_cols=223 Identities=18% Similarity=0.263 Sum_probs=204.8
Q ss_pred CCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEE
Q 017578 133 IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRAL 212 (369)
Q Consensus 133 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 212 (369)
.+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 468999999999999 88999999999999999999999 89999999999999999999998 8899999999999999
Q ss_pred cccccCCccCCchhcC---------CCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEE
Q 017578 213 LSRNQISGTIPSSISM---------IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNL 282 (369)
Q Consensus 213 l~~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L 282 (369)
+++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+.. ++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9999998888887764 999999999999998 789999999999999999999995 5656665 999999
Q ss_pred EcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCC
Q 017578 283 NLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 283 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~ 360 (369)
++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|+|++|++.|.+|. ...+++|+.+++..+..
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 45677777777766543
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.8e-30 Score=261.08 Aligned_cols=272 Identities=23% Similarity=0.222 Sum_probs=202.0
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeec-CccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYI-SPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDI 150 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 150 (369)
.+++.||+++ +...+.+ |..+.++++|++|++++ +.+.+..|..|.++++|++|++++|.+++.+
T Consensus 48 ~~L~~LdLs~-------------n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 48 EQLQLLELGS-------------QYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CSCSEEEECT-------------TCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred ccCeEEeCCC-------------CCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 3667788887 4444555 45667777777777774 6666666666777777777777777776555
Q ss_pred Chh--ccCCCCCCEEEeecCcCCCcCC-ccccCCCCCcEEEcccCccCCCCCCcc-------------------------
Q 017578 151 PRD--IGRLHRLAVLNIADNNISGAIP-PSIANLSSLMHLDLRNNRISGPIPGSV------------------------- 202 (369)
Q Consensus 151 p~~--~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l------------------------- 202 (369)
|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence 544 6667777777777776664433 456666777777776666655444333
Q ss_pred -cCCCC------CCEEEcccccCCccCCchhcC--------------------------------------CCCCCEEEe
Q 017578 203 -GRLRM------MSRALLSRNQISGTIPSSISM--------------------------------------IYRLADLDL 237 (369)
Q Consensus 203 -~~l~~------L~~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L~l 237 (369)
..+++ |++|++++|.+++..+..+.. .++|+.|++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence 33332 677777777665444433221 257899999
Q ss_pred ecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc
Q 017578 238 SMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 238 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
++|.+.+..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..|..+..+++|++|++++|++.+.
T Consensus 274 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp TTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred CCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 999998888888999999999999999999887777766 9999999999999988899999999999999999999988
Q ss_pred chhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCc
Q 017578 317 IPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 317 ~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
.+..+..+++|+.|++++|.+++ ++. +++|+.+++++|+..
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGNKLV 394 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSCC-CSS---CCSCSEEEEESCCCC
T ss_pred ChhhhcCCCCCCEEECCCCCCCc-ccC---CCCcchhccCCCCcc
Confidence 78889999999999999999984 443 677888888887654
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=9.1e-30 Score=258.49 Aligned_cols=278 Identities=19% Similarity=0.240 Sum_probs=215.3
Q ss_pred CcEEEEEcCCCC-Cch-hh----h----------h---cc-CCCcceeecCc--cccCCCCCCEEecCCCCCCccccCcc
Q 017578 72 HRVADINLRGES-EDP-IF----Q----------R---AH-RTGYMTGYISP--AVCKLTRLSSLTLADWKGITGEIPRC 129 (369)
Q Consensus 72 ~~v~~l~l~~~~-~~~-~~----~----------~---~~-~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~p~~ 129 (369)
.+++.|++++.. ... .+ . . +. ..|.+. .+|. .+.++++|+.|++++ +.+. .+| .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~-N~l~-~lp-~ 590 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVH-NKVR-HLE-A 590 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTT-SCCC-BCC-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCC-CCcc-cch-h
Confidence 378889998864 432 11 1 1 11 235555 7777 788888888888884 6666 677 6
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCC-CCEEEeecCcCCCcCCccccCCCC--CcEEEcccCccCCCCCCcc---c
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHR-LAVLNIADNNISGAIPPSIANLSS--LMHLDLRNNRISGPIPGSV---G 203 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l---~ 203 (369)
++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.. |++|++++|.+.+.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 788888888888888887 77777888887 888888888887 77777665543 8888888888876555322 2
Q ss_pred --CCCCCCEEEcccccCCccCCchh-cCCCCCCEEEeecCCcccccchhhhCC--------CCCcEEeccCCcCcCCCCc
Q 017578 204 --RLRMMSRALLSRNQISGTIPSSI-SMIYRLADLDLSMNQISGMIPASLGKM--------AVLATLNLDFNKLSGPIPA 272 (369)
Q Consensus 204 --~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l--------~~L~~L~L~~n~l~~~~~~ 272 (369)
.+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|..+... ++|++|++++|+++ .+|.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 3347888888888888 556554 47899999999999998 566654432 38999999999998 7787
Q ss_pred ccc--c-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeC------CcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 273 SLM--N-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAY------NKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 273 ~~~--~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~------n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
.+. . ++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 775 4 899999999999996 788889999999999976 788889999999999999999999999 78888
Q ss_pred CCCCCCccccccccCCCc
Q 017578 344 GSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 344 ~~~~~~L~~l~l~~N~~~ 361 (369)
. .+++|+.|++++|+..
T Consensus 824 ~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 824 K-LTPQLYILDIADNPNI 840 (876)
T ss_dssp C-CCSSSCEEECCSCTTC
T ss_pred h-hcCCCCEEECCCCCCC
Confidence 5 4479999999999864
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7.9e-30 Score=250.29 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=114.9
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|++++ |.+.+..+..+.++++|++|++++ +.+.+..|..|.++++|++|++++|.++ .+|
T Consensus 52 ~~L~~L~Ls~-------------N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 52 PRTKALSLSQ-------------NSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp TTCCEEECCS-------------SCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCcCEEECCC-------------CCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 5788888888 788877778999999999999995 8888888888999999999999999998 677
Q ss_pred hhccCCCCCCEEEeecCcCCC-cCCccccCCCCCcEEEcccCccCCCCCCcccCCCCC--CEEEcccccC--CccCCchh
Q 017578 152 RDIGRLHRLAVLNIADNNISG-AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM--SRALLSRNQI--SGTIPSSI 226 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l 226 (369)
.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 66 89999999999999985 3467899999999999999998753 45555555 9999999988 66655555
Q ss_pred cC
Q 017578 227 SM 228 (369)
Q Consensus 227 ~~ 228 (369)
..
T Consensus 192 ~~ 193 (562)
T 3a79_B 192 QI 193 (562)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=9.8e-30 Score=238.44 Aligned_cols=263 Identities=20% Similarity=0.209 Sum_probs=213.5
Q ss_pred CCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChh-ccCCCCCCEEEeecCcCCC
Q 017578 94 TGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRD-IGRLHRLAVLNIADNNISG 172 (369)
Q Consensus 94 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~~~~ 172 (369)
.+.+.+..+..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.++ .+|.. +.++++|++|++++|.+.+
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence 4667777777899999999999995 7888777888999999999999999999 45544 6899999999999999997
Q ss_pred cCCccccCCCCCcEEEcccCccCCCCCCcccC-------------------------------------CCCCCEEEccc
Q 017578 173 AIPPSIANLSSLMHLDLRNNRISGPIPGSVGR-------------------------------------LRMMSRALLSR 215 (369)
Q Consensus 173 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-------------------------------------l~~L~~L~l~~ 215 (369)
..+..+.++++|++|++++|.+++.....+.+ .++|++|++++
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence 77778999999999999999987542222211 12455666666
Q ss_pred ccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCC
Q 017578 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIP 294 (369)
Q Consensus 216 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~ 294 (369)
|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +|..... ++|++|++++|.++ .+|
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~ 311 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVE 311 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecC
Confidence 666542 568889999999999999998889999999999999999999985 4444444 99999999999999 567
Q ss_pred cccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCcccCCC
Q 017578 295 DVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 295 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
..+..+++|++|++++|++++. + +..+++|+.|++++|++.+.-.. ..+..+....+.+++..|.++.
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTTC
T ss_pred ccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecccc
Confidence 6788899999999999999844 3 67889999999999999753221 2455666677888998898764
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.2e-29 Score=227.61 Aligned_cols=250 Identities=18% Similarity=0.196 Sum_probs=200.1
Q ss_pred CEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEccc
Q 017578 112 SSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191 (369)
Q Consensus 112 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 191 (369)
++++.++ ..+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~-~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 5677763 5554 455433 46899999999999866667788999999999999999877788889999999999999
Q ss_pred Cc-cCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCC
Q 017578 192 NR-ISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPI 270 (369)
Q Consensus 192 n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 270 (369)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666788889999999999999998877888888999999999999998766667888899999999999888555
Q ss_pred Cccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCC
Q 017578 271 PASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDH 349 (369)
Q Consensus 271 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 349 (369)
+..+.. ++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++....+....+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 545555 8899999999998888888888888999999999998877777788888899999988888755443222334
Q ss_pred ccccccccCCCcccCC
Q 017578 350 LEASSFAYNKCLCGKP 365 (369)
Q Consensus 350 L~~l~l~~N~~~c~~~ 365 (369)
++.+....+...|.-|
T Consensus 250 l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHCCSEECCCBEEES
T ss_pred HHhcccccCccccCCc
Confidence 5556666777776554
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.3e-29 Score=227.35 Aligned_cols=274 Identities=17% Similarity=0.165 Sum_probs=222.8
Q ss_pred ceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCC
Q 017578 64 GVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIG 143 (369)
Q Consensus 64 gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~ 143 (369)
+..|.... .+.++.++ +.+. .+|..+ .++|++|++++ +.+.+..+..|..+++|++|++++
T Consensus 5 ~C~C~~~~--~~~~~c~~-------------~~l~-~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~ 65 (285)
T 1ozn_A 5 ACVCYNEP--KVTTSCPQ-------------QGLQ-AVPVGI--PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHS 65 (285)
T ss_dssp TCEEECSS--SCEEECCS-------------SCCS-SCCTTC--CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCS
T ss_pred CceECCCC--CeEEEcCc-------------CCcc-cCCcCC--CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCC
Confidence 44675432 35678877 3343 344433 46999999995 888877777899999999999999
Q ss_pred CcCcccCChhccCCCCCCEEEeecCc-CCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccC
Q 017578 144 NKLSGDIPRDIGRLHRLAVLNIADNN-ISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTI 222 (369)
Q Consensus 144 n~l~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 222 (369)
|.+++..|..+..+++|++|++++|. +....|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..
T Consensus 66 n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 99997778899999999999999997 77555788999999999999999999888888999999999999999999777
Q ss_pred CchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCC
Q 017578 223 PSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRS 301 (369)
Q Consensus 223 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~ 301 (369)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+++..+..+..++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 778999999999999999999766667999999999999999999887887776 9999999999999987777899999
Q ss_pred CCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCC---CCCCCcccccccc
Q 017578 302 YFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDG---SPFDHLEASSFAY 357 (369)
Q Consensus 302 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~---~~~~~L~~l~l~~ 357 (369)
+|++|++++|.+....+.. .....++.+..+.+.+....|.. ..+..++..++.|
T Consensus 226 ~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283 (285)
T ss_dssp TCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred ccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence 9999999999998655421 11122334457788888888872 2334444444443
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=236.73 Aligned_cols=256 Identities=18% Similarity=0.190 Sum_probs=218.6
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..|.++++|++|++++|.+++..+
T Consensus 52 ~~L~~L~l~~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSN-------------NRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred ccCcEEECCC-------------CcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 3678888888 778877677899999999999995 78888778889999999999999999995444
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCc--cccCCCCCcEEEcccCc-cCCCCCCcccCCCCCCEEEcccccCCccCCchhcC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPP--SIANLSSLMHLDLRNNR-ISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISM 228 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 228 (369)
..+.++++|++|++++|.++ .+|. .+.++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 44899999999999999998 5555 78899999999999994 66666778999999999999999999888999999
Q ss_pred CCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc----CCCCEEEcccCcCcc----cCCcccCCC
Q 017578 229 IYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN----SGISNLNLSRNMLEG----KIPDVFGPR 300 (369)
Q Consensus 229 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----~~L~~L~L~~n~l~~----~~~~~~~~~ 300 (369)
+++|++|++++|.+.......+..+++|++|++++|.+++..+..+.. ..++.++++++.+++ .+|..+..+
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 999999999999997544444556899999999999998765554432 778999999999876 467788899
Q ss_pred CCCCEEEeeCCcccccchhh-ccCCCCCCEEEcccCcCceeCCC
Q 017578 301 SYFTAIDLAYNKLSGSIPRT-LSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 301 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
++|++|++++|+++ .+|.. +..+++|++|++++|++++..|.
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 99999999999999 66665 58999999999999999987664
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-29 Score=248.64 Aligned_cols=263 Identities=19% Similarity=0.180 Sum_probs=215.7
Q ss_pred CCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCc
Q 017578 94 TGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGA 173 (369)
Q Consensus 94 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~ 173 (369)
.+.+.+..+..+..+++|++|++++ +.+.+..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++.
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 4677887788999999999999995 888888888889999999999999999954445578999999999999999988
Q ss_pred CCccccCCCCCcEEEcccCccCCCCCCcccCC-------------------------------------CCCCEEEcccc
Q 017578 174 IPPSIANLSSLMHLDLRNNRISGPIPGSVGRL-------------------------------------RMMSRALLSRN 216 (369)
Q Consensus 174 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~n 216 (369)
.|..+.++++|++|++++|.+.+.....+..+ ++|+.|++++|
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC
Confidence 88889999999999999999885432222111 23555556666
Q ss_pred cCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCc
Q 017578 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPD 295 (369)
Q Consensus 217 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~ 295 (369)
.+++ +..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+++ +|..+.. ++|+.|++++|.++ .+|.
T Consensus 243 ~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~ 318 (597)
T 3oja_B 243 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 318 (597)
T ss_dssp CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc
Confidence 6554 3678899999999999999999899999999999999999999986 4554444 89999999999999 6777
Q ss_pred ccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCcccCC
Q 017578 296 VFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 296 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
.+..+++|++|++++|.+++. + +..+++|+.|++++|++.+..+. ..+..+....+.+++..|+.+
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred ccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 788899999999999999854 3 67889999999999999865322 235555566678888888764
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.4e-31 Score=243.44 Aligned_cols=245 Identities=21% Similarity=0.232 Sum_probs=144.9
Q ss_pred CCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCc-ccCChhcc-------CCCCCCEEEeecCcCCCcCCccc
Q 017578 107 KLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLS-GDIPRDIG-------RLHRLAVLNIADNNISGAIPPSI 178 (369)
Q Consensus 107 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~~~~~~~~~l 178 (369)
..++|++|++++ +.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~-n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRV-DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHC-CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeecc-ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344555566653 444 445443322 666666666663 34444443 56666666666666666666554
Q ss_pred --cCCCCCcEEEcccCccCCCCCCcccCC-----CCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccc--cchh
Q 017578 179 --ANLSSLMHLDLRNNRISGPIPGSVGRL-----RMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGM--IPAS 249 (369)
Q Consensus 179 --~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~ 249 (369)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5666666666666666654 5555554 6666666666666665556666666666666666665543 2333
Q ss_pred h--hCCCCCcEEeccCCcCcC--CCCccc-cc-CCCCEEEcccCcCcccCC-cccCCCCCCCEEEeeCCcccccchhhcc
Q 017578 250 L--GKMAVLATLNLDFNKLSG--PIPASL-MN-SGISNLNLSRNMLEGKIP-DVFGPRSYFTAIDLAYNKLSGSIPRTLS 322 (369)
Q Consensus 250 l--~~l~~L~~L~L~~n~l~~--~~~~~~-~~-~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 322 (369)
+ ..+++|++|++++|.+++ .++..+ .. ++|++|++++|.+++.+| ..+..+++|++|++++|+++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3 566666666666666652 112121 12 566677777776665553 34455666777777777766 5565554
Q ss_pred CCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCc
Q 017578 323 AASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 323 ~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
++|++|++++|++++. |....+++|+.|++++|+..
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred --CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 6667777777777644 55556666777777776653
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.7e-28 Score=224.98 Aligned_cols=258 Identities=23% Similarity=0.351 Sum_probs=167.2
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCccc--
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGD-- 149 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-- 149 (369)
.+++.+++++ +.+.+. ++ +..+++|++|++++ +.+.. + +.+..+++|++|++++|.+.+.
T Consensus 66 ~~L~~L~l~~-------------n~i~~~-~~-~~~l~~L~~L~L~~-n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 66 TNLEYLNLNG-------------NQITDI-SP-LSNLVKLTNLYIGT-NKITD-I-SALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp TTCCEEECCS-------------SCCCCC-GG-GTTCTTCCEEECCS-SCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG
T ss_pred CCccEEEccC-------------Cccccc-hh-hhcCCcCCEEEccC-CcccC-c-hHHcCCCcCCEEECcCCcccCchh
Confidence 3678888887 333322 11 45555555555553 33332 1 2344555555555555554421
Q ss_pred -------------------CChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCE
Q 017578 150 -------------------IPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSR 210 (369)
Q Consensus 150 -------------------~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 210 (369)
.+..+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. +. +..+++|+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 203 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHY 203 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCE
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCccccc-cc-ccCCCccce
Confidence 12224445555555555555442 222 45555566666666555432 22 555666666
Q ss_pred EEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcC
Q 017578 211 ALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNML 289 (369)
Q Consensus 211 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 289 (369)
+++.+|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+.. ++|++|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHhcCCCcCEEEccCCcc
Confidence 6666666654322 6777888888888888875433 77888888888888888753 3 3333 8899999999988
Q ss_pred cccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCC
Q 017578 290 EGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKC 360 (369)
Q Consensus 290 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~ 360 (369)
++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..| ...+++|+.+++++|+.
T Consensus 278 ~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 854 457888999999999999998888889999999999999999987666 56789999999999875
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=8.7e-31 Score=238.21 Aligned_cols=266 Identities=21% Similarity=0.209 Sum_probs=212.5
Q ss_pred CCCCCCCCCCCCccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCC-ccccCc
Q 017578 50 FNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGI-TGEIPR 128 (369)
Q Consensus 50 ~~~W~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~p~ 128 (369)
...|.....|..+..+.......+++.+++++ +.+ .+|..+... |+.|++++ +.+ ...+|.
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~-------------n~l--~~p~~~~~~--L~~L~L~~-n~l~~~~~~~ 82 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRV-------------DTE--ADLGQFTDI--IKSLSLKR-LTVRAARIPS 82 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHC-------------CTT--CCCHHHHHH--HHHCCCCE-EEEEEEECBH
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeecc-------------ccc--ccHHHHHHH--Hhhccccc-ccccCCCcCH
Confidence 34565322222355544332223555566666 666 677766655 88889985 666 445666
Q ss_pred cCC-------CCCCCCEEEcCCCcCcccCChhc--cCCCCCCEEEeecCcCCCcCCccccCC-----CCCcEEEcccCcc
Q 017578 129 CIS-------SIPFLRILDLIGNKLSGDIPRDI--GRLHRLAVLNIADNNISGAIPPSIANL-----SSLMHLDLRNNRI 194 (369)
Q Consensus 129 ~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l 194 (369)
.+. ++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+
T Consensus 83 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 83 RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred HHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 555 78999999999999998899876 8999999999999999966 8888777 9999999999999
Q ss_pred CCCCCCcccCCCCCCEEEcccccCCcc--CCchh--cCCCCCCEEEeecCCccc--ccc-hhhhCCCCCcEEeccCCcCc
Q 017578 195 SGPIPGSVGRLRMMSRALLSRNQISGT--IPSSI--SMIYRLADLDLSMNQISG--MIP-ASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 195 ~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~ 267 (369)
.+..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.++
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 988889999999999999999998764 34444 889999999999999983 223 34467899999999999999
Q ss_pred CCCCcc-ccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCce
Q 017578 268 GPIPAS-LMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCG 339 (369)
Q Consensus 268 ~~~~~~-~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g 339 (369)
+..|.. +.. ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 877533 333 89999999999999 7777776 8999999999999965 66 8899999999999999985
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-28 Score=233.11 Aligned_cols=226 Identities=21% Similarity=0.229 Sum_probs=162.3
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEE
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLD 188 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 188 (369)
+++++|++++ +.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|+|++|.+++..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4677777774 667766677777777777777777777766666777777777777777777754455577777777777
Q ss_pred cccCccCCCCCCcccCCCCCCEEEcccc-cCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCc
Q 017578 189 LRNNRISGPIPGSVGRLRMMSRALLSRN-QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 189 l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 267 (369)
+++|.+....+..+..+++|++|++++| .+....+..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 7777777555566777777777777774 3433333456777777777777777764 33 4667777777777777777
Q ss_pred CCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 268 GPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 268 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
+..|..+.. ++|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666666655 7777777777777777777777777777777777777766666667777777777777764
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=231.56 Aligned_cols=226 Identities=23% Similarity=0.225 Sum_probs=177.2
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEE
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLD 188 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 188 (369)
++++.|++++ +.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 5788888885 777776677788888888888888888866667788888888888888888855555678888888888
Q ss_pred cccCccCCCCCCcccCCCCCCEEEccccc-CCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCc
Q 017578 189 LRNNRISGPIPGSVGRLRMMSRALLSRNQ-ISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 189 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 267 (369)
+++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 88888876666678888888888888744 44334456778888888888888887 444 4677888888888888888
Q ss_pred CCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 268 GPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 268 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
+..|..+.. ++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 766766666 8888888888888877788888888888888888888876667777888888888888865
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=8.9e-28 Score=221.46 Aligned_cols=263 Identities=23% Similarity=0.332 Sum_probs=178.9
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.+++++ +.+.. + +.+..+++|++|++++ +.+.+ ++. +..+++|++|++++|.+++ ++
T Consensus 44 ~~L~~L~l~~-------------~~i~~-~-~~~~~~~~L~~L~l~~-n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~ 104 (347)
T 4fmz_A 44 ESITKLVVAG-------------EKVAS-I-QGIEYLTNLEYLNLNG-NQITD-ISP-LSNLVKLTNLYIGTNKITD-IS 104 (347)
T ss_dssp TTCSEEECCS-------------SCCCC-C-TTGGGCTTCCEEECCS-SCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG
T ss_pred ccccEEEEeC-------------Ccccc-c-hhhhhcCCccEEEccC-Ccccc-chh-hhcCCcCCEEEccCCcccC-ch
Confidence 3678899998 45543 3 3488899999999996 67764 343 8999999999999999984 44
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYR 231 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 231 (369)
.+..+++|++|++++|.+. .++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++
T Consensus 105 -~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp -GGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred -HHcCCCcCCEEECcCCccc-Cchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 6899999999999999988 4444 7788888888888886543333 36666666666666666553222 455555
Q ss_pred CCEEEeecCCcccccc--------------------hhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCc
Q 017578 232 LADLDLSMNQISGMIP--------------------ASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLE 290 (369)
Q Consensus 232 L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 290 (369)
|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ +.. ++|++|++++|.++
T Consensus 179 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 5555555555542211 114556666666666666653322 323 66777777777766
Q ss_pred ccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCC
Q 017578 291 GKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 291 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
+. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|. ...+++|+.|++++|+.....+
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 42 3466777777777777777643 3466777777888887777765554 3456778888888887665544
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=4.3e-30 Score=234.18 Aligned_cols=251 Identities=22% Similarity=0.211 Sum_probs=191.4
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
+.+...+...+..+++|++|++++ +.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l 95 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L 95 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-E
T ss_pred cchhhhHHHHhccCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-c
Confidence 344444444456677899999985 77777666778888999999999998885443 7888899999999988773 2
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhh-CC
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLG-KM 253 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l 253 (369)
+ ..++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+
T Consensus 96 ~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 2 347889999999888755433 367788999999988877777888888899999999988877666664 68
Q ss_pred CCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcc
Q 017578 254 AVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFS 333 (369)
Q Consensus 254 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 333 (369)
++|++|++++|.+++. +.....++|++|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus 169 ~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 8899999999988754 3333348889999999988854 445788888999999999888 577788888889999999
Q ss_pred cCcCc-eeCCC-CCCCCCccccccccCC
Q 017578 334 HNYLC-GRIPD-GSPFDHLEASSFAYNK 359 (369)
Q Consensus 334 ~N~l~-g~ip~-~~~~~~L~~l~l~~N~ 359 (369)
+|++. +.+|. ...+++|+.+++.+++
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCccCcCHHHHHhccccceEEECCCch
Confidence 99887 55444 2356677777777443
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.7e-27 Score=228.42 Aligned_cols=257 Identities=27% Similarity=0.420 Sum_probs=129.8
Q ss_pred cEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCCh
Q 017578 73 RVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPR 152 (369)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 152 (369)
+++.|++++ +.+.+..+ +.++++|++|++++ +.+.+..+ +.++++|++|++++|.+++ ++.
T Consensus 69 ~L~~L~Ls~-------------n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~ 129 (466)
T 1o6v_A 69 NLTQINFSN-------------NQLTDITP--LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTLFNNQITD-IDP 129 (466)
T ss_dssp TCCEEECCS-------------SCCCCCGG--GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG
T ss_pred CCCEEECCC-------------CccCCchh--hhccccCCEEECCC-CccccChh--hcCCCCCCEEECCCCCCCC-ChH
Confidence 667778777 44444322 66666666666663 44543332 5666666666666666653 222
Q ss_pred hccCCCCCCEEEeecCcCCCcCC--------------------ccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEE
Q 017578 153 DIGRLHRLAVLNIADNNISGAIP--------------------PSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRAL 212 (369)
Q Consensus 153 ~~~~l~~L~~L~L~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 212 (369)
+..+++|++|++++|.+.+ ++ ..+.++++|++|++++|.+.+. ..+..+++|++|+
T Consensus 130 -~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 130 -LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 205 (466)
T ss_dssp -GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred -HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEE
Confidence 5566666666666665542 11 1134445555555555555422 2344555555555
Q ss_pred cccccCCccCC--------------------chhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCc
Q 017578 213 LSRNQISGTIP--------------------SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPA 272 (369)
Q Consensus 213 l~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 272 (369)
+++|.+.+..+ ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 206 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 206 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred ecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 55555543322 123334444444444444433222 3444444444444444443222
Q ss_pred cccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCcc
Q 017578 273 SLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLE 351 (369)
Q Consensus 273 ~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~ 351 (369)
+.. ++|++|++++|.+++..+ +..+++|++|++++|++++..| +..+++|+.|++++|++++. +....+++|+
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~ 356 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNIN 356 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCC
T ss_pred -ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCC
Confidence 222 445555555555543322 4455555555555555554433 44555555555555555532 4444556666
Q ss_pred ccccccCCCc
Q 017578 352 ASSFAYNKCL 361 (369)
Q Consensus 352 ~l~l~~N~~~ 361 (369)
.|++++|+..
T Consensus 357 ~L~l~~n~l~ 366 (466)
T 1o6v_A 357 WLSAGHNQIS 366 (466)
T ss_dssp EEECCSSCCC
T ss_pred EEeCCCCccC
Confidence 6666666544
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.8e-27 Score=224.98 Aligned_cols=248 Identities=21% Similarity=0.241 Sum_probs=171.9
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.+++++ +.+.+. | .+..+++|++|++++ +.+.+. | ++.+++|++|++++|.+++ ++
T Consensus 42 ~~L~~L~Ls~-------------n~l~~~-~-~l~~l~~L~~L~Ls~-n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~ 101 (457)
T 3bz5_A 42 ATLTSLDCHN-------------SSITDM-T-GIEKLTGLTKLICTS-NNITTL-D--LSQNTNLTYLACDSNKLTN-LD 101 (457)
T ss_dssp TTCCEEECCS-------------SCCCCC-T-TGGGCTTCSEEECCS-SCCSCC-C--CTTCTTCSEEECCSSCCSC-CC
T ss_pred CCCCEEEccC-------------CCcccC-h-hhcccCCCCEEEccC-CcCCeE-c--cccCCCCCEEECcCCCCce-ee
Confidence 3678889888 666653 3 678888888888885 666653 3 7788888888888888885 33
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYR 231 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 231 (369)
++++++|++|++++|.+++ ++ ++++++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 7788888888888888874 44 77888888888888888753 2677778888888877554444 3667777
Q ss_pred CCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeC
Q 017578 232 LADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAY 310 (369)
Q Consensus 232 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 310 (369)
|++|++++|.+++ +| ++.+++|++|++++|.+++. + +.. ++|++|++++|++++ +| +..+++|++|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 7888887777775 34 66777777777777777654 1 333 777777777777775 44 66777777777777
Q ss_pred CcccccchhhccCCC-------CCCEEEcccCcCceeCCCCCCCCCccccccccCC
Q 017578 311 NKLSGSIPRTLSAAS-------YIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNK 359 (369)
Q Consensus 311 n~l~~~~p~~l~~l~-------~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~ 359 (369)
|++++..+..+.+++ +|+.|++++|++.|.+|. ..+++|+.|++++|+
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNT 297 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCT
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCc
Confidence 777765444444333 445555555555555553 345566666666654
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.9e-29 Score=241.60 Aligned_cols=247 Identities=23% Similarity=0.241 Sum_probs=209.2
Q ss_pred cCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCc
Q 017578 106 CKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLM 185 (369)
Q Consensus 106 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 185 (369)
..+++|++|++++ +.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++ +| ..++|+
T Consensus 31 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred ccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcC
Confidence 3455899999995 88888777889999999999999999986555 8899999999999999873 33 238999
Q ss_pred EEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhh-CCCCCcEEeccCC
Q 017578 186 HLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLG-KMAVLATLNLDFN 264 (369)
Q Consensus 186 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n 264 (369)
+|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999866543 468899999999999988888999999999999999999988888876 7899999999999
Q ss_pred cCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCc-eeCCC
Q 017578 265 KLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLC-GRIPD 343 (369)
Q Consensus 265 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~ 343 (369)
.+++. +.....++|++|++++|.+++..| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|.
T Consensus 180 ~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 180 FIYDV-KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCCEE-ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc-cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 99865 333334899999999999996544 4888999999999999999 47888999999999999999987 55554
Q ss_pred -CCCCCCccccccc-------cCCCcccCCC
Q 017578 344 -GSPFDHLEASSFA-------YNKCLCGKPL 366 (369)
Q Consensus 344 -~~~~~~L~~l~l~-------~N~~~c~~~l 366 (369)
...++.|+.+++. .|+..|.|+-
T Consensus 257 ~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 3456778888876 8899998864
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.7e-27 Score=226.06 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=174.1
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 209 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 209 (369)
+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+. ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 4455666666666666653 2 235667777777777777764333 56677788888888877642 4577889999
Q ss_pred EEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCc
Q 017578 210 RALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNM 288 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 288 (369)
+|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +.. ++|++|++++|.
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 99999999986544 8899999999999999986544 8899999999999999986544 334 999999999999
Q ss_pred CcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCccc
Q 017578 289 LEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCG 363 (369)
Q Consensus 289 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~ 363 (369)
+++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++.+| ...+++|+.|++++|++...
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 997766 78899999999999999865 478899999999999999998887 67899999999999987653
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1e-28 Score=224.98 Aligned_cols=241 Identities=22% Similarity=0.197 Sum_probs=200.7
Q ss_pred CCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEc
Q 017578 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 189 (369)
Q Consensus 110 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 189 (369)
.++..+++. +.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCT-TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccc-cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 344556663 55554444556678899999999999997777889999999999999999985443 889999999999
Q ss_pred ccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCC
Q 017578 190 RNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP 269 (369)
Q Consensus 190 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 269 (369)
++|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99998742 2448999999999999875544 367899999999999987787899999999999999999987
Q ss_pred CCccccc--CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCC
Q 017578 270 IPASLMN--SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPF 347 (369)
Q Consensus 270 ~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 347 (369)
.+..+.. ++|++|++++|.+++. +. ...+++|++|++++|++++ +|..+..+++|+.|++++|++++..+....+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 7766643 8999999999999865 32 3458999999999999994 5556899999999999999999544445678
Q ss_pred CCccccccccCCCcccC
Q 017578 348 DHLEASSFAYNKCLCGK 364 (369)
Q Consensus 348 ~~L~~l~l~~N~~~c~~ 364 (369)
++|+.+++++|++.|++
T Consensus 237 ~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTCCEEECTTCCCBHHH
T ss_pred CCCCEEEccCCCccCcC
Confidence 99999999999999875
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.9e-26 Score=228.90 Aligned_cols=141 Identities=23% Similarity=0.237 Sum_probs=123.1
Q ss_pred cCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccC
Q 017578 101 ISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIAN 180 (369)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 180 (369)
+|+.+. +.+++|+|++ +.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.+
T Consensus 46 vP~~lp--~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CCSSSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCCC--cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 454442 4789999995 8898777788999999999999999999766778999999999999999999655667899
Q ss_pred CCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCc-cCCchhcCCCCCCEEEeecCCccc
Q 017578 181 LSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISG-TIPSSISMIYRLADLDLSMNQISG 244 (369)
Q Consensus 181 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~ 244 (369)
+++|++|++++|.+++..+..++.+++|++|++++|.+.. ..|..+..+++|++|++++|.+++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999999999999997777789999999999999999975 467888999999999998887654
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.3e-27 Score=211.82 Aligned_cols=216 Identities=20% Similarity=0.209 Sum_probs=180.3
Q ss_pred ccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccC
Q 017578 125 EIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGR 204 (369)
Q Consensus 125 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 204 (369)
.+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 3555443 57999999999999666668899999999999999998666678899999999999999999877788999
Q ss_pred CCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccc-cchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCC--
Q 017578 205 LRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGM-IPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGIS-- 280 (369)
Q Consensus 205 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~-- 280 (369)
+++|++|++.+|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+.. ++++
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 99999999999999877777789999999999999999863 5889999999999999999998766655555 5565
Q ss_pred --EEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 281 --NLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 281 --~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
+|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 889999999866555444 34799999999998866666678888999999999988876654
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=230.95 Aligned_cols=269 Identities=19% Similarity=0.218 Sum_probs=229.3
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|++++ +.+++..+..+.++++|++|++++ +.+.+..+..|.++++|++|++++|.+++..|
T Consensus 28 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCS-------------CCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccEEEccC-------------CccCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4788999999 888888888999999999999996 77887777889999999999999999997777
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCC-CCCCcccCCCCCCEEEcccccCCccCCchhcCCC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISG-PIPGSVGRLRMMSRALLSRNQISGTIPSSISMIY 230 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 230 (369)
..++++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 889999999999999999985545578999999999999999986 4789999999999999999999988888888888
Q ss_pred CC----CEEEeecCCcccccchhhhCCCCCcEEeccCCc-----------------------------------------
Q 017578 231 RL----ADLDLSMNQISGMIPASLGKMAVLATLNLDFNK----------------------------------------- 265 (369)
Q Consensus 231 ~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~----------------------------------------- 265 (369)
+| +.|++++|.+++..+..+... +|++|++++|.
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 88 899999999998777776655 78888887762
Q ss_pred -----------------CcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCC
Q 017578 266 -----------------LSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYI 327 (369)
Q Consensus 266 -----------------l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 327 (369)
+.+..+..+.. ++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L 327 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSL 327 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSC
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccccc
Confidence 22333444444 88999999999988 678788888 9999999999988 6665 478899
Q ss_pred CEEEcccCcCceeCCCCCCCCCccccccccCCCc
Q 017578 328 GHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 328 ~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~ 361 (369)
+.|++++|.+.+.++. ..+++|+.|++++|...
T Consensus 328 ~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp CEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCB
T ss_pred CEEeCcCCcccccccc-ccCCCCCEEeCcCCccC
Confidence 9999999998877776 67899999999998754
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.1e-26 Score=219.81 Aligned_cols=251 Identities=19% Similarity=0.174 Sum_probs=149.8
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.+++++ +.+++. + ++.+++|++|++++ +.+.+. + ++.+++|++|++++|.+++ +|
T Consensus 64 ~~L~~L~Ls~-------------n~l~~~-~--~~~l~~L~~L~Ls~-N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~ 122 (457)
T 3bz5_A 64 TGLTKLICTS-------------NNITTL-D--LSQNTNLTYLACDS-NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD 122 (457)
T ss_dssp TTCSEEECCS-------------SCCSCC-C--CTTCTTCSEEECCS-SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC
T ss_pred CCCCEEEccC-------------CcCCeE-c--cccCCCCCEEECcC-CCCcee-e--cCCCCcCCEEECCCCcCCe-ec
Confidence 3678888888 555553 2 67777777777774 556543 3 6677777777777777774 43
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCC
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYR 231 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 231 (369)
++.+++|++|++++|.+++ ++ ++++++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++
T Consensus 123 --~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 6677777777777777764 32 556666666666666443333 35555666666666666554 22 445555
Q ss_pred CCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCccc-------------
Q 017578 232 LADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVF------------- 297 (369)
Q Consensus 232 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~------------- 297 (369)
|+.|++++|.+++. .++.+++|++|++++|++++ +| +.. ++|++|++++|++++..+..+
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 55555555555532 24455555555555555554 33 222 555555555555554332222
Q ss_pred ----------------CCCCCCCEEEeeCCcccccchhh--------ccCCCCCCEEEcccCcCceeCCCCCCCCCcccc
Q 017578 298 ----------------GPRSYFTAIDLAYNKLSGSIPRT--------LSAASYIGHLDFSHNYLCGRIPDGSPFDHLEAS 353 (369)
Q Consensus 298 ----------------~~~~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l 353 (369)
+.+++|+.|++++|...+.+|.. +..+++|++|++++|+++| ++ ...+++|+.|
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L 344 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSL 344 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEE
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEE
Confidence 34456666666666655555432 4455677777777777776 33 5567778888
Q ss_pred ccccCCCc
Q 017578 354 SFAYNKCL 361 (369)
Q Consensus 354 ~l~~N~~~ 361 (369)
++++|...
T Consensus 345 ~l~~N~l~ 352 (457)
T 3bz5_A 345 SCVNAHIQ 352 (457)
T ss_dssp ECCSSCCC
T ss_pred ECCCCCCC
Confidence 88777654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=7e-28 Score=231.95 Aligned_cols=223 Identities=23% Similarity=0.199 Sum_probs=193.4
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 209 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 209 (369)
...+++|++|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3445689999999999998777899999999999999999986554 889999999999999988432 338999
Q ss_pred EEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc--CCCCEEEcccC
Q 017578 210 RALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN--SGISNLNLSRN 287 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n 287 (369)
+|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+.. ++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999976554 4678999999999999888889999999999999999999888877763 99999999999
Q ss_pred cCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccCCCcccCC
Q 017578 288 MLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 288 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
.+++..+ ...+++|++|++++|.+++ +|..+..+++|+.|++++|++++..+....+++|+.+++++|++.|++.
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 9996633 4468999999999999996 4555889999999999999999754456678999999999999998753
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2.7e-26 Score=204.16 Aligned_cols=218 Identities=21% Similarity=0.280 Sum_probs=122.9
Q ss_pred CCCCCCccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCC
Q 017578 56 NDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPF 135 (369)
Q Consensus 56 ~~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 135 (369)
.++|. |.|+.|... ..++.+++++ +.++. +|..+. ++
T Consensus 2 ~~~C~-~~~~~C~c~-~~~~~l~~~~-------------~~l~~-ip~~~~---------------------------~~ 38 (270)
T 2o6q_A 2 EALCK-KDGGVCSCN-NNKNSVDCSS-------------KKLTA-IPSNIP---------------------------AD 38 (270)
T ss_dssp CCCBG-GGTCSBEEE-TTTTEEECTT-------------SCCSS-CCSCCC---------------------------TT
T ss_pred CccCC-CCCCCCEeC-CCCCEEEccC-------------CCCCc-cCCCCC---------------------------CC
Confidence 46786 999998653 2455677777 33331 232221 34
Q ss_pred CCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEccc
Q 017578 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSR 215 (369)
Q Consensus 136 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 215 (369)
+++|++++|.+++..+..+.++++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 45555555555533333455555555555555555422222334555555555555555544444455555555555555
Q ss_pred ccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCC
Q 017578 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIP 294 (369)
Q Consensus 216 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~ 294 (369)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 5555544555555666666666666665444444566666666666666666444433433 666777777777665555
Q ss_pred cccCCCCCCCEEEeeCCccccc
Q 017578 295 DVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 295 ~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
..+..+++|+.|++++|.+...
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCCS
T ss_pred HHhccccCCCEEEecCCCeeCC
Confidence 5667777777777777776544
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=6.3e-26 Score=201.81 Aligned_cols=201 Identities=19% Similarity=0.267 Sum_probs=127.1
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLS 214 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 214 (369)
..++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5678888888888 5666553 568888888888875555577778888888888888775555556777777777777
Q ss_pred cccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccC
Q 017578 215 RNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKI 293 (369)
Q Consensus 215 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~ 293 (369)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77777655556666777777777777776555555666666666666666665433333333 55555555555555444
Q ss_pred CcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCc
Q 017578 294 PDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 294 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444555555555555555555433334444555555555555443
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=3.8e-26 Score=203.89 Aligned_cols=209 Identities=22% Similarity=0.245 Sum_probs=184.8
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEE
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLD 188 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 188 (369)
+.|++|++++ +.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4799999995 888877777899999999999999999976667899999999999999999977778899999999999
Q ss_pred cccCccCCCCCCcccCCCCCCEEEcccccCCcc-CCchhcCCCCCCEEEeecCCcccccchhhhCCCCCc----EEeccC
Q 017578 189 LRNNRISGPIPGSVGRLRMMSRALLSRNQISGT-IPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLA----TLNLDF 263 (369)
Q Consensus 189 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 263 (369)
+++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999977777899999999999999999863 689999999999999999999987777777777777 899999
Q ss_pred CcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccch
Q 017578 264 NKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIP 318 (369)
Q Consensus 264 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 318 (369)
|.+++..+..+...+|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9998665555555789999999999997777778999999999999999987654
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.4e-26 Score=206.51 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=118.7
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 209 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 209 (369)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 456777888888888887 5665553 577888888888776666677777788888887777764322 25666677
Q ss_pred EEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCc
Q 017578 210 RALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNM 288 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 288 (369)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.. ++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777776666 45555566666666666666666544455555666666666666555333333322 455555555555
Q ss_pred CcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 289 LEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 289 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
+++..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 55333334444445555555555544 4444444444444444444433
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.4e-26 Score=219.20 Aligned_cols=245 Identities=18% Similarity=0.232 Sum_probs=133.9
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCC-----------------
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIP----------------- 134 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~----------------- 134 (369)
.+++++++++ +.+ |.+|+.++++++|++|++++ +.+.+.+|..++.++
T Consensus 11 ~~L~~L~l~~-------------n~l-~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 11 TFLQEPLRHS-------------SNL-TEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp -------------------------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccchhhhccc-------------Cch-hhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCE
Confidence 3667777777 444 55555555555555555553 445555555554443
Q ss_pred ----------------CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCC
Q 017578 135 ----------------FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPI 198 (369)
Q Consensus 135 ----------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 198 (369)
+|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +
T Consensus 76 L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 76 LELNNLGLSSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp EECTTSCCSCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-C
T ss_pred EEecCCccccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-C
Confidence 45555555555553 3422 2455555555555552 2221 1577777777777774 5
Q ss_pred CCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCC
Q 017578 199 PGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSG 278 (369)
Q Consensus 199 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 278 (369)
| .++.+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|... ++
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~ 216 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LS 216 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TT
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--Cc
Confidence 5 47777888888888887774 44432 477777787777775 45 57777788888888887764 33322 56
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCccccccccC
Q 017578 279 ISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYN 358 (369)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N 358 (369)
|++|++++|.++ .+|. +..+++|++|++++|++++ +|.. .++|+.|++++|++++ +|. .+++|+.|++++|
T Consensus 217 L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ls~N 287 (454)
T 1jl5_A 217 LESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE--LPQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSS
T ss_pred ccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc--ccCcCCEEECcCC
Confidence 777777777777 5553 6777777777777777764 4432 2556666666666553 443 1244555555554
Q ss_pred C
Q 017578 359 K 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 288 ~ 288 (454)
T 1jl5_A 288 I 288 (454)
T ss_dssp C
T ss_pred c
Confidence 4
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.9e-26 Score=225.54 Aligned_cols=263 Identities=24% Similarity=0.317 Sum_probs=154.3
Q ss_pred CCCCCCC-CCCCCCCccceEe------CCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCC
Q 017578 48 GIFNSWT-GNDCCHNWYGVSC------DQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWK 120 (369)
Q Consensus 48 ~~~~~W~-~~~~c~~w~gv~C------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 120 (369)
.++..|. ..++|. |.|..| ......++.+++++ +.++ .+|..+. ++|++|++++ +
T Consensus 10 ~~w~~W~~~~~~~~-~~~r~~~~~~~~~c~~~~l~~L~ls~-------------n~L~-~lp~~l~--~~L~~L~L~~-N 71 (622)
T 3g06_A 10 AVWSAWRRAAPAEE-SRGRAAVVQKMRACLNNGNAVLNVGE-------------SGLT-TLPDCLP--AHITTLVIPD-N 71 (622)
T ss_dssp CHHHHHHHTCCGGG-HHHHHHHHHHHHHHHHHCCCEEECCS-------------SCCS-CCCSCCC--TTCSEEEECS-C
T ss_pred HHHHHHHhcCCcch-hccccccCcccccccCCCCcEEEecC-------------CCcC-ccChhhC--CCCcEEEecC-C
Confidence 3445676 556675 865422 11123578899988 4444 4555444 6777777774 5
Q ss_pred CCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCC
Q 017578 121 GITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPG 200 (369)
Q Consensus 121 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 200 (369)
.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++. +|.
T Consensus 72 ~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~ 138 (622)
T 3g06_A 72 NLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPV 138 (622)
T ss_dssp CCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCC
Confidence 555 3444 4566777777777766 4554 5566677777776666 3443 34556666666665552 333
Q ss_pred cccCCCCCCEEEcccccCCccCCchh-----------------cCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 201 SVGRLRMMSRALLSRNQISGTIPSSI-----------------SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 201 ~l~~l~~L~~L~l~~n~~~~~~~~~l-----------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
. +++|++|++++|.+++ +|..+ ..+++|+.|++++|.+++ +|. ..++|+.|++++
T Consensus 139 ~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 139 L---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN 210 (622)
T ss_dssp C---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred C---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence 2 2555555555555543 22111 223566666666666663 332 234566666666
Q ss_pred CcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 264 NKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 264 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
|.++ .+|... ++|++|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|.
T Consensus 211 N~l~-~l~~~~--~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 211 NRLT-SLPALP--SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp SCCS-SCCCCC--TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred Cccc-ccCCCC--CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 6665 333221 567777777777774 44 34567777777777777 4554 5567777777777777 5554
Q ss_pred -CCCCCCccccccccCCCc
Q 017578 344 -GSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 344 -~~~~~~L~~l~l~~N~~~ 361 (369)
...+++|+.|++++|+..
T Consensus 279 ~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGGGSCTTCEEECCSCCCC
T ss_pred HHhhccccCEEEecCCCCC
Confidence 445677777777777754
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.8e-24 Score=206.26 Aligned_cols=237 Identities=19% Similarity=0.328 Sum_probs=120.8
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcC
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAI 174 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 174 (369)
|.+.+ +| .++++++|++|++++ +.+.+ +|..+ ++|++|++++|.+++ +| .++++++|++|++++|.+++ +
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~-N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDN-NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCS-SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCC-CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 44443 44 466666666666664 44543 34322 356666666666663 44 46666666666666666653 3
Q ss_pred CccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCC
Q 017578 175 PPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMA 254 (369)
Q Consensus 175 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 254 (369)
|... ++|++|++++|.+. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|.+++ +|.. .+
T Consensus 211 ~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 211 PDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cC
Confidence 3322 35666666666665 455 36666677777777766663 3321 2455555555555553 3321 24
Q ss_pred CCcEEeccCCcCcC--CCCccc-------------cc--CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccc
Q 017578 255 VLATLNLDFNKLSG--PIPASL-------------MN--SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSI 317 (369)
Q Consensus 255 ~L~~L~L~~n~l~~--~~~~~~-------------~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 317 (369)
+|++|++++|.+++ ..|..+ .. ++|++|++++|++++ +|.. +++|++|++++|+++ .+
T Consensus 278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 45555555555543 111100 00 356666666666653 3332 356677777777666 45
Q ss_pred hhhccCCCCCCEEEcccCcCce--eCCCC-CCC-------------CCccccccccCCCcc
Q 017578 318 PRTLSAASYIGHLDFSHNYLCG--RIPDG-SPF-------------DHLEASSFAYNKCLC 362 (369)
Q Consensus 318 p~~l~~l~~L~~L~ls~N~l~g--~ip~~-~~~-------------~~L~~l~l~~N~~~c 362 (369)
|. .+++|++|++++|++++ .+|.. ..+ ++|+.|++++|+...
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 54 35677777777777776 45541 122 566777777776654
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3.8e-25 Score=196.99 Aligned_cols=202 Identities=19% Similarity=0.247 Sum_probs=139.8
Q ss_pred CCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCE
Q 017578 131 SSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSR 210 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 210 (369)
..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++ + +.+.++++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34566677777766665 233 45666777777777776663 2 35666677777777777776655555667777777
Q ss_pred EEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcC
Q 017578 211 ALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNML 289 (369)
Q Consensus 211 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 289 (369)
|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 777777777655566677777777777777777655555677777777777777777555544444 7777778877777
Q ss_pred cccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 290 EGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 290 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
++..+..+..+++|++|++++|.+.+. +++|+.++++.|+++|.+|.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 776676677788888888888877644 44677778888888888876
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=8.1e-25 Score=196.57 Aligned_cols=205 Identities=21% Similarity=0.204 Sum_probs=179.0
Q ss_pred cccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCC
Q 017578 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 183 (369)
.+.++++++++++++ +.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++ ++.. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTT
T ss_pred cccccCCccEEECCC-CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCc
Confidence 477899999999995 7776 5666554 689999999999997778889999999999999999984 4433 78999
Q ss_pred CcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 184 LMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 184 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
|++|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999998 7788899999999999999999987778899999999999999999977777788999999999999
Q ss_pred CcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc
Q 017578 264 NKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 264 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
|++++..+..+.. ++|++|++++|+++ .+|..+...++|+.+++++|.+...
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9998544444444 99999999999999 7788888889999999999998753
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=2.2e-27 Score=217.83 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=211.5
Q ss_pred CCCCCccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCC--CCCCEEecCCCCCCccccCccCCCCC
Q 017578 57 DCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKL--TRLSSLTLADWKGITGEIPRCISSIP 134 (369)
Q Consensus 57 ~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~p~~~~~l~ 134 (369)
..|.+|.++.|+. ..++.+|+++ +.+. +..+.++ ++++.|++++ +.+.+..+. +..++
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~-------------~~~~---~~~~~~~~~~~l~~L~l~~-n~l~~~~~~-~~~~~ 93 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTG-------------KNLH---PDVTGRLLSQGVIAFRCPR-SFMDQPLAE-HFSPF 93 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTT-------------CBCC---HHHHHHHHHTTCSEEECTT-CEECSCCCS-CCCCB
T ss_pred HHHHHHHHHhcCc--hhheeecccc-------------ccCC---HHHHHhhhhccceEEEcCC-ccccccchh-hccCC
Confidence 4555699998864 3578899998 4444 3455666 8999999995 777766555 66799
Q ss_pred CCCEEEcCCCcCccc-CChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccC-ccCCC-CCCcccCCCCCCEE
Q 017578 135 FLRILDLIGNKLSGD-IPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNN-RISGP-IPGSVGRLRMMSRA 211 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L 211 (369)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 999999999998865 7788899999999999999998888888999999999999999 56642 56667889999999
Q ss_pred Ecccc-cCCcc-CCchhcCCC-CCCEEEeecC--Ccc-cccchhhhCCCCCcEEeccCCc-CcCCCCccccc-CCCCEEE
Q 017578 212 LLSRN-QISGT-IPSSISMIY-RLADLDLSMN--QIS-GMIPASLGKMAVLATLNLDFNK-LSGPIPASLMN-SGISNLN 283 (369)
Q Consensus 212 ~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~ 283 (369)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.. ++|++|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 99999 88764 577788899 9999999999 455 4577788899999999999999 77676766666 9999999
Q ss_pred cccCc-CcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 284 LSRNM-LEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 284 L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
+++|. +.......+..+++|++|++++| ++...-..+. .++..|++++|++++..|.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 99995 44333346788999999999999 5543333332 2356677999999998887
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.1e-25 Score=195.22 Aligned_cols=211 Identities=21% Similarity=0.269 Sum_probs=179.0
Q ss_pred cccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCC
Q 017578 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 183 (369)
...++++|+.|++++ +.+. .+ ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+.++++
T Consensus 36 ~~~~l~~L~~L~l~~-~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANN-SDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTT-SCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCC-CCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 356788999999985 5555 23 347889999999999999985 3 47889999999999999999666667889999
Q ss_pred CcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 184 LMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 184 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999999977777789999999999999999977777788999999999999999977777788999999999999
Q ss_pred CcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCC
Q 017578 264 NKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASY 326 (369)
Q Consensus 264 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 326 (369)
|.+++..+..+.. ++|++|++++|.+.+. +++|+.++++.|.++|.+|.+++.++.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999776665655 9999999999988743 557889999999999999988877654
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=1.7e-27 Score=227.97 Aligned_cols=275 Identities=17% Similarity=0.159 Sum_probs=175.7
Q ss_pred cEEEEEcCCCCCchhhhhccCCCcce----eecCccccCCCCCCEEecCCCCCCccccCcc-----CCCCCCCCEEEcCC
Q 017578 73 RVADINLRGESEDPIFQRAHRTGYMT----GYISPAVCKLTRLSSLTLADWKGITGEIPRC-----ISSIPFLRILDLIG 143 (369)
Q Consensus 73 ~v~~l~l~~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~-----~~~l~~L~~L~L~~ 143 (369)
+++.|++++ +.++ +.++..+.++++|++|++++ +.+.+..+.. ....++|++|++++
T Consensus 86 ~L~~L~L~~-------------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 86 KIQKLSLQN-------------CCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp CCCEEECTT-------------SCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ceeEEEccC-------------CCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence 467777777 5555 35577788888888888885 5565432222 22356788888888
Q ss_pred CcCccc----CChhccCCCCCCEEEeecCcCCCcCCcccc-----CCCCCcEEEcccCccCCC----CCCcccCCCCCCE
Q 017578 144 NKLSGD----IPRDIGRLHRLAVLNIADNNISGAIPPSIA-----NLSSLMHLDLRNNRISGP----IPGSVGRLRMMSR 210 (369)
Q Consensus 144 n~l~~~----~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~ 210 (369)
|.+++. ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|++
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 887753 344556678888888888877643333332 245788888888877643 3555666778888
Q ss_pred EEcccccCCccCC-----chhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCCccccc-----
Q 017578 211 ALLSRNQISGTIP-----SSISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIPASLMN----- 276 (369)
Q Consensus 211 L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----- 276 (369)
|++++|.+++... .....+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 8888877664321 1223467778888887777653 4566666777888888777776443333322
Q ss_pred -CCCCEEEcccCcCccc----CCcccCCCCCCCEEEeeCCcccccchhhccC-----CCCCCEEEcccCcCce----eCC
Q 017578 277 -SGISNLNLSRNMLEGK----IPDVFGPRSYFTAIDLAYNKLSGSIPRTLSA-----ASYIGHLDFSHNYLCG----RIP 342 (369)
Q Consensus 277 -~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~ls~N~l~g----~ip 342 (369)
++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 4777777777777654 3445556677777777777776554444432 5677777777777764 444
Q ss_pred C-CCCCCCccccccccCCCc
Q 017578 343 D-GSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 343 ~-~~~~~~L~~l~l~~N~~~ 361 (369)
. ...+++|+.|++++|+..
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhCCCccEEECCCCCCC
Confidence 3 234566777777777643
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.7e-26 Score=216.17 Aligned_cols=242 Identities=17% Similarity=0.272 Sum_probs=191.2
Q ss_pred ecCccccCCCCCCEEecCCCCCCccc----cCccCCCCCCCCEEEcCCC---cCcccCChhc-------cCCCCCCEEEe
Q 017578 100 YISPAVCKLTRLSSLTLADWKGITGE----IPRCISSIPFLRILDLIGN---KLSGDIPRDI-------GRLHRLAVLNI 165 (369)
Q Consensus 100 ~~~~~l~~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~L 165 (369)
.++..+..+++|++|++++ +.+... ++..+..+++|++|++++| ++++.+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4567788899999999995 666655 3445778999999999986 4445566554 68899999999
Q ss_pred ecCcCCC----cCCccccCCCCCcEEEcccCccCCCCCCc----ccCC---------CCCCEEEcccccCC-ccCC---c
Q 017578 166 ADNNISG----AIPPSIANLSSLMHLDLRNNRISGPIPGS----VGRL---------RMMSRALLSRNQIS-GTIP---S 224 (369)
Q Consensus 166 ~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~~~-~~~~---~ 224 (369)
++|.+.+ .++..+.++++|++|++++|.++...+.. +..+ ++|++|++++|+++ +.++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999986 46777888999999999999886433333 3334 89999999999987 3344 4
Q ss_pred hhcCCCCCCEEEeecCCccc-----ccchhhhCCCCCcEEeccCCcCc----CCCCccccc-CCCCEEEcccCcCccc--
Q 017578 225 SISMIYRLADLDLSMNQISG-----MIPASLGKMAVLATLNLDFNKLS----GPIPASLMN-SGISNLNLSRNMLEGK-- 292 (369)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~-~~L~~L~L~~n~l~~~-- 292 (369)
.+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+.. ++|++|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 67788999999999999873 23447788999999999999986 455665555 8999999999999865
Q ss_pred --CCccc--CCCCCCCEEEeeCCcccc----cchhhc-cCCCCCCEEEcccCcCceeCC
Q 017578 293 --IPDVF--GPRSYFTAIDLAYNKLSG----SIPRTL-SAASYIGHLDFSHNYLCGRIP 342 (369)
Q Consensus 293 --~~~~~--~~~~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~ip 342 (369)
++..+ ..+++|++|++++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45666 348999999999999997 488877 568999999999999987654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=6e-25 Score=199.43 Aligned_cols=222 Identities=20% Similarity=0.209 Sum_probs=135.1
Q ss_pred CCCEEEcCCCcCcccCCh---hccCCCCCCEEEeecCcCCCcCCccc--cCCCCCcEEEcccCccCCCCC----CcccCC
Q 017578 135 FLRILDLIGNKLSGDIPR---DIGRLHRLAVLNIADNNISGAIPPSI--ANLSSLMHLDLRNNRISGPIP----GSVGRL 205 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~l 205 (369)
.++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355566665555421000 11123456666666666666666655 666666666666666665433 223456
Q ss_pred CCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccc--cc--hhhhCCCCCcEEeccCCcCcCCCCcc---c-cc-
Q 017578 206 RMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGM--IP--ASLGKMAVLATLNLDFNKLSGPIPAS---L-MN- 276 (369)
Q Consensus 206 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~~---~-~~- 276 (369)
++|++|++++|++.+..+..+..+++|++|++++|++.+. ++ ..++.+++|++|++++|.++. ++.. + ..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 6677777777777666666666677777777777765532 11 122456677777777777652 2221 1 22
Q ss_pred CCCCEEEcccCcCcccCCcccCCC---CCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCcccc
Q 017578 277 SGISNLNLSRNMLEGKIPDVFGPR---SYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEAS 353 (369)
Q Consensus 277 ~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l 353 (369)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|+|++|++++ +|....+++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEE
Confidence 677777777777776656555554 57777777777777 5666553 677777777777774 2444567777777
Q ss_pred ccccCCCc
Q 017578 354 SFAYNKCL 361 (369)
Q Consensus 354 ~l~~N~~~ 361 (369)
++++|++.
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777754
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.3e-24 Score=184.98 Aligned_cols=195 Identities=17% Similarity=0.239 Sum_probs=116.6
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCc-CCCcCCccccCCCCCcEEEccc-CccCCCCCCcccCCCCCCEEE
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN-ISGAIPPSIANLSSLMHLDLRN-NRISGPIPGSVGRLRMMSRAL 212 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 212 (369)
+|++|++++|.+++..+..+.++++|++|++++|. ++...+..+.++++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56677777777764444466667777777777775 6544444566677777777776 666655555666677777777
Q ss_pred cccccCCccCCchhcCCCCCC---EEEeecC-CcccccchhhhCCCCCc-EEeccCCcCcCCCCccccc-CCCCEEEccc
Q 017578 213 LSRNQISGTIPSSISMIYRLA---DLDLSMN-QISGMIPASLGKMAVLA-TLNLDFNKLSGPIPASLMN-SGISNLNLSR 286 (369)
Q Consensus 213 l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 286 (369)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+|..... ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 77777664 444 56666666 7777777 77655555677777777 7777777766 33332222 4555555555
Q ss_pred Cc-CcccCCcccCCC-CCCCEEEeeCCcccccchhhccCCCCCCEEEcccC
Q 017578 287 NM-LEGKIPDVFGPR-SYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335 (369)
Q Consensus 287 n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N 335 (369)
|. +++..+..+..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 53 554444445555 55555555555554 22222 3444555555443
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=9.9e-26 Score=209.08 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=192.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccccC----ccCCCCC-CCCEEEcCCCcCcccCChhccCC-----CCCCEEE
Q 017578 95 GYMTGYISPAVCKLTRLSSLTLADWKGITGEIP----RCISSIP-FLRILDLIGNKLSGDIPRDIGRL-----HRLAVLN 164 (369)
Q Consensus 95 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~ 164 (369)
+.++|.+|..+...++|++|++++ +.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 678888888778888899999995 77776555 6677888 89999999999997767666664 9999999
Q ss_pred eecCcCCCcCCcccc----CC-CCCcEEEcccCccCCCCCCcc----cC-CCCCCEEEcccccCCccC----CchhcCCC
Q 017578 165 IADNNISGAIPPSIA----NL-SSLMHLDLRNNRISGPIPGSV----GR-LRMMSRALLSRNQISGTI----PSSISMIY 230 (369)
Q Consensus 165 L~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~~~~~~----~~~l~~l~ 230 (369)
+++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..+..++
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 999999866665444 44 899999999999986655443 33 369999999999998643 34455665
Q ss_pred -CCCEEEeecCCcccccchhhh----CC-CCCcEEeccCCcCcCCCC----ccccc--CCCCEEEcccCcCcccCC----
Q 017578 231 -RLADLDLSMNQISGMIPASLG----KM-AVLATLNLDFNKLSGPIP----ASLMN--SGISNLNLSRNMLEGKIP---- 294 (369)
Q Consensus 231 -~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~----~~~~~--~~L~~L~L~~n~l~~~~~---- 294 (369)
+|++|++++|.+++..+..+. .. ++|++|++++|.+++... ..+.. ++|++|++++|.+++..+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 999999999999877665444 44 599999999999986433 33333 589999999999986544
Q ss_pred cccCCCCCCCEEEeeCCccccc-------chhhccCCCCCCEEEcccCcCcee
Q 017578 295 DVFGPRSYFTAIDLAYNKLSGS-------IPRTLSAASYIGHLDFSHNYLCGR 340 (369)
Q Consensus 295 ~~~~~~~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~ls~N~l~g~ 340 (369)
..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|++.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4457789999999999995433 344677888999999999998765
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=8.5e-24 Score=185.98 Aligned_cols=192 Identities=20% Similarity=0.282 Sum_probs=131.3
Q ss_pred CCCCCccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCC
Q 017578 57 DCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFL 136 (369)
Q Consensus 57 ~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 136 (369)
+|+. |.|+.|.. ..+.+++++ +.+. .+|..+. +.++.|++++ +.+.+..+..|..+++|
T Consensus 3 ~Cp~-~~gC~C~~---~~~~l~~~~-------------~~l~-~~p~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L 61 (251)
T 3m19_A 3 TCET-VTGCTCNE---GKKEVDCQG-------------KSLD-SVPSGIP--ADTEKLDLQS-TGLATLSDATFRGLTKL 61 (251)
T ss_dssp -CHH-HHSSEEEG---GGTEEECTT-------------CCCS-SCCSCCC--TTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred cCCC-CCceEcCC---CCeEEecCC-------------CCcc-ccCCCCC--CCCCEEEccC-CCcCccCHhHhcCcccC
Confidence 4565 99999964 234578887 3333 3444443 4677777774 66766666667777777
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccc
Q 017578 137 RILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRN 216 (369)
Q Consensus 137 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 216 (369)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 77777777777666666777777777777777777555556677777777777777777555555667777777777777
Q ss_pred cCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCC
Q 017578 217 QISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGP 269 (369)
Q Consensus 217 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 269 (369)
++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77755555667777777777777777755555666677777777777766644
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=3.5e-24 Score=187.01 Aligned_cols=206 Identities=15% Similarity=0.150 Sum_probs=173.5
Q ss_pred CcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCc-cCCCCCCcccCCCCCCEEEccc-ccCCccCC
Q 017578 146 LSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNR-ISGPIPGSVGRLRMMSRALLSR-NQISGTIP 223 (369)
Q Consensus 146 l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~ 223 (369)
++ .+|. +. ++|++|++++|.+++..+..+.++++|++|++++|. ++...+..+..+++|++|++++ |.+++..+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 55 5676 43 489999999999996666689999999999999997 8766667899999999999999 99997777
Q ss_pred chhcCCCCCCEEEeecCCcccccchhhhCCCCCc---EEeccCC-cCcCCCCccccc-CCCC-EEEcccCcCcccCCccc
Q 017578 224 SSISMIYRLADLDLSMNQISGMIPASLGKMAVLA---TLNLDFN-KLSGPIPASLMN-SGIS-NLNLSRNMLEGKIPDVF 297 (369)
Q Consensus 224 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~-~~L~-~L~L~~n~l~~~~~~~~ 297 (369)
..+..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+.. ++|+ +|++++|.++...+..+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 889999999999999999985 665 88888888 9999999 888655555655 8999 99999999994444445
Q ss_pred CCCCCCCEEEeeCCc-ccccchhhccCC-CCCCEEEcccCcCceeCCCCCCCCCccccccccCCC
Q 017578 298 GPRSYFTAIDLAYNK-LSGSIPRTLSAA-SYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAYNKC 360 (369)
Q Consensus 298 ~~~~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~N~~ 360 (369)
.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|++.++..
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC--
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCccC
Confidence 44 899999999995 986667788899 99999999999998 56654 799999999988753
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=5.4e-24 Score=193.15 Aligned_cols=226 Identities=18% Similarity=0.175 Sum_probs=181.9
Q ss_pred CCCCCCEEecCCCCCCccc-cCc--cCCCCCCCCEEEcCCCcCcccCChhc--cCCCCCCEEEeecCcCCCcCC----cc
Q 017578 107 KLTRLSSLTLADWKGITGE-IPR--CISSIPFLRILDLIGNKLSGDIPRDI--GRLHRLAVLNIADNNISGAIP----PS 177 (369)
Q Consensus 107 ~l~~L~~L~l~~~~~~~~~-~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~~~~~~~----~~ 177 (369)
+...++.+.+.+ ..+... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..
T Consensus 62 ~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGA-AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECS-CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeC-CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 344578888874 444322 111 11234679999999999998888887 899999999999999986555 34
Q ss_pred ccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCcc--C--CchhcCCCCCCEEEeecCCcccccch----h
Q 017578 178 IANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGT--I--PSSISMIYRLADLDLSMNQISGMIPA----S 249 (369)
Q Consensus 178 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~ 249 (369)
+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 45789999999999999988888999999999999999997652 2 2334788999999999999973 333 3
Q ss_pred hhCCCCCcEEeccCCcCcCCCCccccc----CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCC
Q 017578 250 LGKMAVLATLNLDFNKLSGPIPASLMN----SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAAS 325 (369)
Q Consensus 250 l~~l~~L~~L~L~~n~l~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 325 (369)
++.+++|++|++++|.+++..|..+.. ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence 578899999999999999887766554 59999999999999 6677664 7999999999999953 43 57889
Q ss_pred CCCEEEcccCcCce
Q 017578 326 YIGHLDFSHNYLCG 339 (369)
Q Consensus 326 ~L~~L~ls~N~l~g 339 (369)
+|+.|++++|+++.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999999873
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=3.3e-23 Score=182.15 Aligned_cols=179 Identities=20% Similarity=0.265 Sum_probs=119.9
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLS 214 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 214 (369)
..++++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666666 4554443 456666666666665555556666666666666666666555566666667777777
Q ss_pred cccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccC
Q 017578 215 RNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKI 293 (369)
Q Consensus 215 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~ 293 (369)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 76666555566666777777777777776555555667777777777777776544444544 77777777777777666
Q ss_pred CcccCCCCCCCEEEeeCCccccc
Q 017578 294 PDVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 294 ~~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
+..+..+++|++|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777788888888888888765
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.9e-26 Score=219.31 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=210.5
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccc-----cCCCCCCEEecCCCCCCccc----cCccCCCCCCCCEEEcC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAV-----CKLTRLSSLTLADWKGITGE----IPRCISSIPFLRILDLI 142 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~L~ 142 (369)
.+++.|++++ +.+++..+..+ ...++|++|++++ +.+.+. ++..+..+++|++|+++
T Consensus 113 ~~L~~L~Ls~-------------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 113 PTLQELHLSD-------------NLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp TTCCEEECCS-------------SBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred CceeEEECCC-------------CcCchHHHHHHHHHHhcCCCcceEEECCC-CCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 4788999999 66654433332 2367899999995 777753 35666778999999999
Q ss_pred CCcCcccCChhcc-----CCCCCCEEEeecCcCCCc----CCccccCCCCCcEEEcccCccCCCC-----CCcccCCCCC
Q 017578 143 GNKLSGDIPRDIG-----RLHRLAVLNIADNNISGA----IPPSIANLSSLMHLDLRNNRISGPI-----PGSVGRLRMM 208 (369)
Q Consensus 143 ~n~l~~~~p~~~~-----~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L 208 (369)
+|.+++..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.... +..+..+++|
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 9998855444443 367999999999999853 4667788999999999999886432 2223368999
Q ss_pred CEEEcccccCCcc----CCchhcCCCCCCEEEeecCCcccccchhhhC-----CCCCcEEeccCCcCcCCC----Ccccc
Q 017578 209 SRALLSRNQISGT----IPSSISMIYRLADLDLSMNQISGMIPASLGK-----MAVLATLNLDFNKLSGPI----PASLM 275 (369)
Q Consensus 209 ~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~----~~~~~ 275 (369)
++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++.. +..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 9999999999864 5777888999999999999998665555543 269999999999998663 33333
Q ss_pred c-CCCCEEEcccCcCcccCCcccCC-----CCCCCEEEeeCCcccc----cchhhccCCCCCCEEEcccCcCcee-----
Q 017578 276 N-SGISNLNLSRNMLEGKIPDVFGP-----RSYFTAIDLAYNKLSG----SIPRTLSAASYIGHLDFSHNYLCGR----- 340 (369)
Q Consensus 276 ~-~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~----- 340 (369)
. ++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence 3 89999999999998765544432 6799999999999997 7888999999999999999999864
Q ss_pred ---CCCCCCCCCccccccccCCCc
Q 017578 341 ---IPDGSPFDHLEASSFAYNKCL 361 (369)
Q Consensus 341 ---ip~~~~~~~L~~l~l~~N~~~ 361 (369)
+|. ...+|+.|.+.++.+.
T Consensus 419 ~~~l~~--~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 419 VESVRQ--PGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHTS--TTCCCCEEECTTCCCC
T ss_pred HHHhcc--CCcchhheeecccccC
Confidence 443 3345666666666543
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.6e-25 Score=204.61 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=196.7
Q ss_pred EEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC----hhccCCC-CCCEEEeecCcCCCcCCccccCC-----C
Q 017578 113 SLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP----RDIGRLH-RLAVLNIADNNISGAIPPSIANL-----S 182 (369)
Q Consensus 113 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~ 182 (369)
.+.++ .+.+.+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls-~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLT-LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECC-CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccc-cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677 488888888888877889999999999996555 6778888 99999999999997777777665 9
Q ss_pred CCcEEEcccCccCCCCCCcc----cCC-CCCCEEEcccccCCccCCchh----cC-CCCCCEEEeecCCccccc----ch
Q 017578 183 SLMHLDLRNNRISGPIPGSV----GRL-RMMSRALLSRNQISGTIPSSI----SM-IYRLADLDLSMNQISGMI----PA 248 (369)
Q Consensus 183 ~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~ 248 (369)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999987666544 344 899999999999987666554 33 369999999999998643 44
Q ss_pred hhhCCC-CCcEEeccCCcCcCCCCccccc------CCCCEEEcccCcCccc----CCcccCC-CCCCCEEEeeCCccccc
Q 017578 249 SLGKMA-VLATLNLDFNKLSGPIPASLMN------SGISNLNLSRNMLEGK----IPDVFGP-RSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 249 ~l~~l~-~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~L~~n~l~~~----~~~~~~~-~~~L~~L~L~~n~l~~~ 316 (369)
.+...+ +|++|++++|.+++..+..+.. ++|++|++++|.+++. ++..+.. .++|++|++++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 555665 9999999999998777654432 4899999999999863 3444544 46999999999999875
Q ss_pred ch----hhccCCCCCCEEEcccCcCceeCC--------CCCCCCCccccccccCCCccc
Q 017578 317 IP----RTLSAASYIGHLDFSHNYLCGRIP--------DGSPFDHLEASSFAYNKCLCG 363 (369)
Q Consensus 317 ~p----~~l~~l~~L~~L~ls~N~l~g~ip--------~~~~~~~L~~l~l~~N~~~c~ 363 (369)
.+ ..+..+++|+.|++++|.+.+..+ ....+++|+.+++++|+....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 44 445678999999999998442211 234677899999999986543
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.1e-25 Score=210.49 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=193.8
Q ss_pred ccCccCCCCCCCCEEEcCCCcCcccCC----hhccCCCCCCEEEeecCcC---CCcCCccc-------cCCCCCcEEEcc
Q 017578 125 EIPRCISSIPFLRILDLIGNKLSGDIP----RDIGRLHRLAVLNIADNNI---SGAIPPSI-------ANLSSLMHLDLR 190 (369)
Q Consensus 125 ~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~~---~~~~~~~l-------~~l~~L~~L~l~ 190 (369)
.++..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+ ++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 356667788999999999999986533 3467899999999999644 44556555 688999999999
Q ss_pred cCccCC----CCCCcccCCCCCCEEEcccccCCccCCch----hcCC---------CCCCEEEeecCCcc-cccc---hh
Q 017578 191 NNRISG----PIPGSVGRLRMMSRALLSRNQISGTIPSS----ISMI---------YRLADLDLSMNQIS-GMIP---AS 249 (369)
Q Consensus 191 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~~ 249 (369)
+|.+.. .++..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|.++ ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999986 36667889999999999999997544433 3444 89999999999997 3344 46
Q ss_pred hhCCCCCcEEeccCCcCcCC-----CCccccc-CCCCEEEcccCcCc----ccCCcccCCCCCCCEEEeeCCccccc---
Q 017578 250 LGKMAVLATLNLDFNKLSGP-----IPASLMN-SGISNLNLSRNMLE----GKIPDVFGPRSYFTAIDLAYNKLSGS--- 316 (369)
Q Consensus 250 l~~l~~L~~L~L~~n~l~~~-----~~~~~~~-~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~--- 316 (369)
+..+++|++|++++|.++.. .+..+.. ++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 77899999999999998732 2324444 89999999999996 56788889999999999999999876
Q ss_pred -chhhccC--CCCCCEEEcccCcCce----eCCCC--CCCCCccccccccCCCcccC
Q 017578 317 -IPRTLSA--ASYIGHLDFSHNYLCG----RIPDG--SPFDHLEASSFAYNKCLCGK 364 (369)
Q Consensus 317 -~p~~l~~--l~~L~~L~ls~N~l~g----~ip~~--~~~~~L~~l~l~~N~~~c~~ 364 (369)
++..+.. +++|++|+|++|++++ .+|.. ..+++|+.|++++|+.....
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5677744 8999999999999997 46652 24799999999999987654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=6.3e-23 Score=185.88 Aligned_cols=194 Identities=23% Similarity=0.383 Sum_probs=133.1
Q ss_pred ccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCC
Q 017578 105 VCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL 184 (369)
Q Consensus 105 l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 184 (369)
..++++|++|++++ +.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFG-TGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred HHHcCCcCEEEeeC-CCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence 34567788888875 55543 33 46777788888888887774 443 7777888888888887763 3 357777788
Q ss_pred cEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCC
Q 017578 185 MHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 185 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 264 (369)
++|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCC
Confidence 888888887764 33 37777778888887777764332 67777777777777777643 32 677777777777777
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccc
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSG 315 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 315 (369)
.+++..+ +.. ++|++|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7764332 333 777777777777775442 6677777777777777763
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.7e-22 Score=197.38 Aligned_cols=225 Identities=22% Similarity=0.301 Sum_probs=160.8
Q ss_pred CcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCC
Q 017578 72 HRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP 151 (369)
Q Consensus 72 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 151 (369)
.+++.|++++ |.++ .+|. .+++|++|++++ +.+. .+|. .+++|++|++++|.++ .+|
T Consensus 61 ~~L~~L~L~~-------------N~l~-~lp~---~l~~L~~L~Ls~-N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~ 117 (622)
T 3g06_A 61 AHITTLVIPD-------------NNLT-SLPA---LPPELRTLEVSG-NQLT-SLPV---LPPGLLELSIFSNPLT-HLP 117 (622)
T ss_dssp TTCSEEEECS-------------CCCS-CCCC---CCTTCCEEEECS-CCCS-CCCC---CCTTCCEEEECSCCCC-CCC
T ss_pred CCCcEEEecC-------------CCCC-CCCC---cCCCCCEEEcCC-CcCC-cCCC---CCCCCCEEECcCCcCC-CCC
Confidence 3677888888 5444 3443 456777777774 5554 3443 4566777777777666 344
Q ss_pred hhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCc---c--------------cCCCCCCEEEcc
Q 017578 152 RDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGS---V--------------GRLRMMSRALLS 214 (369)
Q Consensus 152 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l--------------~~l~~L~~L~l~ 214 (369)
. .+++|++|++++|+++ .+|.. +++|++|++++|.+++ +|.. + ..+++|+.|+++
T Consensus 118 ~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls 189 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS 189 (622)
T ss_dssp C---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred C---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECC
Confidence 3 3455666666666655 34432 2555556665555543 2221 1 233889999999
Q ss_pred cccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCC
Q 017578 215 RNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIP 294 (369)
Q Consensus 215 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 294 (369)
+|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|
T Consensus 190 ~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp~~--l~~L~~L~Ls~N~L~-~lp 257 (622)
T 3g06_A 190 DNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLT-SLP 257 (622)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCC
T ss_pred CCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CCCC--CCcCcEEECCCCCCC-cCC
Confidence 999885 444 3478999999999998 4553 35789999999999985 5522 288999999999999 555
Q ss_pred cccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC
Q 017578 295 DVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD 343 (369)
Q Consensus 295 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 343 (369)
. .+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 5 5689999999999999 8899999999999999999999987665
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.9e-22 Score=186.16 Aligned_cols=238 Identities=20% Similarity=0.177 Sum_probs=149.2
Q ss_pred EEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCc-cccCCCCCcE-EEcc
Q 017578 113 SLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPP-SIANLSSLMH-LDLR 190 (369)
Q Consensus 113 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~-L~l~ 190 (369)
+++-++ ++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|.+++++++ +.++
T Consensus 13 ~v~C~~-~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQE-SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEES-TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecC-CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 344442 4444 455544 24677777777777733334567777777777777776544443 4566766654 4455
Q ss_pred cCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeec-CCcccccchhhhCCC-CCcEEeccCCcCcC
Q 017578 191 NNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSM-NQISGMIPASLGKMA-VLATLNLDFNKLSG 268 (369)
Q Consensus 191 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~ 268 (369)
.|++....|..+..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766666777777777777777777765555555666677777755 345433334455443 57777888887774
Q ss_pred CCCcccccCCCCEEEccc-CcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCC
Q 017578 269 PIPASLMNSGISNLNLSR-NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPF 347 (369)
Q Consensus 269 ~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 347 (369)
..+..+...+++++++++ |.++...+..|..+++|++|++++|+|+ .+|.. .+.+|+.|.+.++.-.+.+|....+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLEKL 245 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCchhC
Confidence 333333336677777764 5555444456777788888888888877 44432 3456666766666555577776677
Q ss_pred CCcccccccc
Q 017578 348 DHLEASSFAY 357 (369)
Q Consensus 348 ~~L~~l~l~~ 357 (369)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 7777777754
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.9e-22 Score=182.79 Aligned_cols=194 Identities=22% Similarity=0.366 Sum_probs=168.1
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 209 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 209 (369)
+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 346789999999999998 466 6889999999999999998 4555 8999999999999999985 3 3689999999
Q ss_pred EEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCc
Q 017578 210 RALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNM 288 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 288 (369)
+|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +.. ++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 999999999863 3 38999999999999999986533 88999999999999999854 33 444 999999999999
Q ss_pred CcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCce
Q 017578 289 LEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCG 339 (369)
Q Consensus 289 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g 339 (369)
+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 986544 7889999999999999996553 7899999999999999975
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.5e-24 Score=194.63 Aligned_cols=243 Identities=17% Similarity=0.233 Sum_probs=195.0
Q ss_pred CCCCEEecCCCCCCccccCccCCCC--CCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCc-CCccccCCCCCc
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSI--PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGA-IPPSIANLSSLM 185 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~ 185 (369)
..++.+++++ +.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3478999985 5544 3445555 7899999999999966554 66899999999999998855 777889999999
Q ss_pred EEEcccCccCCCCCCcccCCCCCCEEEcccc-cCCc-cCCchhcCCCCCCEEEeecC-Ccccc-cchhhhCCC-CCcEEe
Q 017578 186 HLDLRNNRISGPIPGSVGRLRMMSRALLSRN-QISG-TIPSSISMIYRLADLDLSMN-QISGM-IPASLGKMA-VLATLN 260 (369)
Q Consensus 186 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~ 260 (369)
+|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999988777888899999999999999 6775 36677889999999999999 88865 677888999 999999
Q ss_pred ccCC--cCc-CCCCccccc-CCCCEEEcccCc-CcccCCcccCCCCCCCEEEeeCCc-ccccchhhccCCCCCCEEEccc
Q 017578 261 LDFN--KLS-GPIPASLMN-SGISNLNLSRNM-LEGKIPDVFGPRSYFTAIDLAYNK-LSGSIPRTLSAASYIGHLDFSH 334 (369)
Q Consensus 261 L~~n--~l~-~~~~~~~~~-~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ls~ 334 (369)
+++| .++ +.++..+.. ++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9999 455 334444444 899999999999 777788889999999999999995 4433334688899999999999
Q ss_pred CcCceeCCCCC--CC-CCccccccccCCCc
Q 017578 335 NYLCGRIPDGS--PF-DHLEASSFAYNKCL 361 (369)
Q Consensus 335 N~l~g~ip~~~--~~-~~L~~l~l~~N~~~ 361 (369)
| ++... .+ .++..|++.+|...
T Consensus 282 ~-----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 282 I-----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp S-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred c-----cCHHHHHHHHhhCcceEEecccCc
Confidence 8 33311 12 34667777777654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.1e-21 Score=188.85 Aligned_cols=189 Identities=26% Similarity=0.376 Sum_probs=143.5
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEE
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLD 188 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 188 (369)
.+|+.|++++ +.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+
T Consensus 59 ~~L~~L~Ls~-n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNR-LNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCS-SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCC-CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 3788999985 67765 67655 378999999999988 677 457889999999998885 776 654 889999
Q ss_pred cccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcC
Q 017578 189 LRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSG 268 (369)
Q Consensus 189 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 268 (369)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++|.|+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 99998885 555 57888888888888885 555 56788888888888875 565 54 78888888888887
Q ss_pred CCCcccccCCC-------CEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCC
Q 017578 269 PIPASLMNSGI-------SNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAAS 325 (369)
Q Consensus 269 ~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 325 (369)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 194 ~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 194 SLPA-VPV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred chhh-HHH-hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5565 432 66 88888888887 5676666788888888888888877777766543
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.2e-21 Score=165.53 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcc
Q 017578 135 FLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLS 214 (369)
Q Consensus 135 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 214 (369)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555554443333334444444444444444442222233444444444444444443333333444444444444
Q ss_pred cccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCC
Q 017578 215 RNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 215 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 264 (369)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44444333333334444444444444443322222333333444444333
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.3e-21 Score=163.13 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=72.8
Q ss_pred CCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEee
Q 017578 159 RLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLS 238 (369)
Q Consensus 159 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 238 (369)
+|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555555443333334444555555555555443333334444555555555555443333334444555555555
Q ss_pred cCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccc
Q 017578 239 MNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSI 317 (369)
Q Consensus 239 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 317 (369)
+|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+.+ .+++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 55544333333444455555555555444333222322 445555555544432 2234444555555555555
Q ss_pred hhhccCC
Q 017578 318 PRTLSAA 324 (369)
Q Consensus 318 p~~l~~l 324 (369)
|.+++.+
T Consensus 182 p~~~~~l 188 (208)
T 2o6s_A 182 RNSAGSV 188 (208)
T ss_dssp BCTTSSB
T ss_pred eccCccc
Confidence 5444443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=5.3e-21 Score=186.08 Aligned_cols=194 Identities=19% Similarity=0.322 Sum_probs=141.9
Q ss_pred ccce-EeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEE
Q 017578 62 WYGV-SCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILD 140 (369)
Q Consensus 62 w~gv-~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 140 (369)
|.|+ .|.. .+++.|++++ +.+++ +|..+. ++|++|++++ +.+. .+| ..+++|++|+
T Consensus 50 ~~~l~~C~~--~~L~~L~Ls~-------------n~L~~-lp~~l~--~~L~~L~Ls~-N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 50 VSLLKECLI--NQFSELQLNR-------------LNLSS-LPDNLP--PQITVLEITQ-NALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHHHHHHHH--TTCSEEECCS-------------SCCSC-CCSCCC--TTCSEEECCS-SCCS-CCC---CCCTTCCEEE
T ss_pred hhhcccccc--CCccEEEeCC-------------CCCCc-cCHhHc--CCCCEEECcC-CCCc-ccc---cccCCCCEEE
Confidence 7888 6764 3788888888 66665 666553 7788888885 6666 566 4467888888
Q ss_pred cCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCc
Q 017578 141 LIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISG 220 (369)
Q Consensus 141 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 220 (369)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 88888885 666 554 78888888888874 665 57888888888888875 554 56788888888888875
Q ss_pred cCCchhcCCCCCCEEEeecCCcccccchhhhCCCCC-------cEEeccCCcCcCCCCccccc-CCCCEEEcccCcCccc
Q 017578 221 TIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVL-------ATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGK 292 (369)
Q Consensus 221 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 292 (369)
+|. +. ++|+.|++++|.++ .+|. +.. +| ++|++++|.++ .+|..+.. ++|+.|++++|.+++.
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 565 54 78888888888887 5555 443 66 88888888887 56766655 8888888888888877
Q ss_pred CCcccCC
Q 017578 293 IPDVFGP 299 (369)
Q Consensus 293 ~~~~~~~ 299 (369)
+|..+..
T Consensus 246 ~p~~l~~ 252 (571)
T 3cvr_A 246 IRESLSQ 252 (571)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7766554
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.4e-20 Score=173.48 Aligned_cols=227 Identities=17% Similarity=0.057 Sum_probs=162.2
Q ss_pred cCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCCh-hccCCCCCCE-EEeecCcCCCcCCccc
Q 017578 101 ISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPR-DIGRLHRLAV-LNIADNNISGAIPPSI 178 (369)
Q Consensus 101 ~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~~n~~~~~~~~~l 178 (369)
+|..+ .+++++|+|++ +.++...+..|.++++|++|+|++|.+.+.+|. .|.+++++++ +.+..|+++...|..|
T Consensus 24 iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred cCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 45444 35788999985 777754445688899999999999988656654 5678888775 5666788886667788
Q ss_pred cCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEccc-ccCCccCCchhcCC-CCCCEEEeecCCcccccchhhhCCCCC
Q 017578 179 ANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSR-NQISGTIPSSISMI-YRLADLDLSMNQISGMIPASLGKMAVL 256 (369)
Q Consensus 179 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L 256 (369)
..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .++.......+|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccch
Confidence 8899999999999998866666666777788888865 45554444555555 35888999999988 455555566788
Q ss_pred cEEeccCCcCcCCCCcc-ccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEccc
Q 017578 257 ATLNLDFNKLSGPIPAS-LMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334 (369)
Q Consensus 257 ~~L~L~~n~l~~~~~~~-~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~ 334 (369)
+++++.+++..+.+|.. +.. ++|++|++++|+++...+.. +.+|+.|.+.++.--..+| .+..+++|+.+++++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 89998754433466654 444 88999999999998444433 4456666665554444666 477888899988876
Q ss_pred C
Q 017578 335 N 335 (369)
Q Consensus 335 N 335 (369)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 4
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.1e-20 Score=162.51 Aligned_cols=150 Identities=24% Similarity=0.262 Sum_probs=83.5
Q ss_pred cEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCC
Q 017578 185 MHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 185 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 264 (369)
+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46777777766 4555443 56777777777776555556666666777777777666555666666666666666666
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
.++...+..+.. ++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 665322222222 4555555555555544444444445555555555554443333444444444444444443
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=5e-22 Score=199.66 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCC--CCCCCCCccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCcc
Q 017578 27 CPPSERAALLAFKAALHEPYLGIFNSWT--GNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPA 104 (369)
Q Consensus 27 ~~~~~~~~ll~~~~~~~~~~~~~~~~W~--~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (369)
....++++++++..+........-..|. ..... .|.++.+.. .++++++|.+ +.+.. ++..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~l~L~~-------------n~~~~-~~~~ 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG-TATNSAVST--PLTPKIELFA-------------NGKDE-ANQA 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccc-cCCCceecC--CccceEEeeC-------------CCCCc-chhh
Confidence 4566789999998877544333445675 23334 498888765 5789999987 44443 3444
Q ss_pred ccCCCCCCEEecCC----CCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccC
Q 017578 105 VCKLTRLSSLTLAD----WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIAN 180 (369)
Q Consensus 105 l~~l~~L~~L~l~~----~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 180 (369)
+.....|+.+.+.. ++.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 44444455444432 12222 45677888999999999999998 78888889999999999999998 88999999
Q ss_pred CCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCC-CcEE
Q 017578 181 LSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAV-LATL 259 (369)
Q Consensus 181 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L 259 (369)
+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.+++.+|..+..+.. +..+
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 999999999999998 78999999999999999999997 67888999999999999999999888887765422 2347
Q ss_pred eccCCcCcCCCCcccccCCCCEEEcccC--------cCcccCCcccCCCCCCCEEEeeCCccc
Q 017578 260 NLDFNKLSGPIPASLMNSGISNLNLSRN--------MLEGKIPDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 260 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n--------~l~~~~~~~~~~~~~L~~L~L~~n~l~ 314 (369)
++++|.+++.+|. .++.|+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 347 ~l~~N~l~~~~p~-----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 347 YLRDNRPEIPLPH-----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHCCCCCCCCC-----C-----------------------------------------CCC
T ss_pred hhccCcccCcCcc-----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 7888998887774 4566777666 333333344445555556666666654
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=6.9e-21 Score=176.34 Aligned_cols=127 Identities=23% Similarity=0.201 Sum_probs=58.6
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcccc-CCCCCcEEEcccCccCCCCCCcccCCCCCCEEEccc
Q 017578 137 RILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIA-NLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSR 215 (369)
Q Consensus 137 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 215 (369)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45566666655 3454332 2355555555555543333343 455555555555555444444444444444444444
Q ss_pred ccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcC
Q 017578 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKL 266 (369)
Q Consensus 216 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 266 (369)
|+++...+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 444433333344444444444444444433333333333344443333333
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=158.65 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=122.7
Q ss_pred cEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCC-chhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 185 MHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIP-SSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 185 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
+++++++|.++ .+|..+. +.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58899999887 4666553 456889999998887644 4578888899999999888877677888888888888888
Q ss_pred CcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCC
Q 017578 264 NKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIP 342 (369)
Q Consensus 264 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 342 (369)
|.+++..+..+.. ++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8888666655655 888888888888887778888888888888888888887778888888888888888888775443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.4e-19 Score=156.68 Aligned_cols=162 Identities=22% Similarity=0.247 Sum_probs=95.9
Q ss_pred CCCCCCCCCCccceEeCCCCCcEEEEEcCCCCCchhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCccccCccCC
Q 017578 52 SWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCIS 131 (369)
Q Consensus 52 ~W~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~ 131 (369)
.|.+...|. |.+|.|... ++ +.+|..+. ++|++|++++ +.+.+..|..|.
T Consensus 12 ~~~~~~~Cs-~~~v~c~~~--~l------------------------~~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~ 61 (229)
T 3e6j_A 12 ACPSQCSCS-GTTVDCRSK--RH------------------------ASVPAGIP--TNAQILYLHD-NQITKLEPGVFD 61 (229)
T ss_dssp CCCTTCEEE-TTEEECTTS--CC------------------------SSCCSCCC--TTCSEEECCS-SCCCCCCTTTTT
T ss_pred cCCCCCEEe-CCEeEccCC--Cc------------------------CccCCCCC--CCCCEEEcCC-CccCccCHHHhh
Confidence 455777786 999999642 11 11222221 5666777764 666665566666
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEE
Q 017578 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRA 211 (369)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 211 (369)
.+++|++|++++|.++...+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 6666777777666666333344566666666666666666444444556666666666666665 455555666666666
Q ss_pred EcccccCCccCCchhcCCCCCCEEEeecCCccc
Q 017578 212 LLSRNQISGTIPSSISMIYRLADLDLSMNQISG 244 (369)
Q Consensus 212 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 244 (369)
++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 666666654444445555555555555555543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.3e-19 Score=162.65 Aligned_cols=172 Identities=23% Similarity=0.350 Sum_probs=137.1
Q ss_pred CCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCC
Q 017578 130 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 209 (369)
Q Consensus 130 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 209 (369)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 346788999999999988 444 47889999999999999984 444 8889999999999998874 3 3488889999
Q ss_pred EEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCc
Q 017578 210 RALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNM 288 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 288 (369)
+|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +.. ++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999988753 5678888899999999888754 567888888888888888875544 434 888888888888
Q ss_pred CcccCCcccCCCCCCCEEEeeCCcccc
Q 017578 289 LEGKIPDVFGPRSYFTAIDLAYNKLSG 315 (369)
Q Consensus 289 l~~~~~~~~~~~~~L~~L~L~~n~l~~ 315 (369)
+++ ++ .+..+++|+.|++++|++++
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 874 33 37788888888888888774
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=157.58 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=139.5
Q ss_pred CEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCC-CcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeec
Q 017578 161 AVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP-GSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSM 239 (369)
Q Consensus 161 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 239 (369)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 68999999998 6787664 467899999999997644 4588999999999999999988888999999999999999
Q ss_pred CCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccch
Q 017578 240 NQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIP 318 (369)
Q Consensus 240 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 318 (369)
|.+++..+..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999888888999999999999999999887877776 999999999999998889999999999999999999987654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.7e-19 Score=159.73 Aligned_cols=173 Identities=27% Similarity=0.388 Sum_probs=141.5
Q ss_pred ccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCC
Q 017578 105 VCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL 184 (369)
Q Consensus 105 l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 184 (369)
+.++++|++|++++ +.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTC
T ss_pred hhhcCcccEEEccC-CCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCC
Confidence 45688899999985 66653 33 47888999999999999985 443 8899999999999999874 3 348889999
Q ss_pred cEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCC
Q 017578 185 MHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 185 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 264 (369)
++|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999998853 4688899999999999999864 678889999999999999986544 888999999999999
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCccc
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGK 292 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 292 (369)
.+++ ++. +.. ++|+.|++++|.++..
T Consensus 189 ~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred cCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 9985 443 444 8999999999998753
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.1e-19 Score=154.53 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=80.1
Q ss_pred CcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 184 LMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 184 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456667666665 4454332 5666666666666655555666666666666666666543334455555566666655
Q ss_pred CcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCc
Q 017578 264 NKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 264 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
|.+++..+..+.. ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5555333333322 45555555555554 44444444555555555555554333334444445555555554444
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7.1e-19 Score=151.26 Aligned_cols=153 Identities=22% Similarity=0.303 Sum_probs=135.8
Q ss_pred CEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecC
Q 017578 161 AVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMN 240 (369)
Q Consensus 161 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 240 (369)
+.++++++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67889999888 7777664 78999999999999777778999999999999999999888999999999999999999
Q ss_pred CcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc
Q 017578 241 QISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 241 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
.++...+..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..+..+..+++|++|++++|.+..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 999666666788999999999999999877777766 9999999999999988888899999999999999998754
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=5.9e-19 Score=173.35 Aligned_cols=173 Identities=28% Similarity=0.386 Sum_probs=112.9
Q ss_pred ccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCC
Q 017578 105 VCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSL 184 (369)
Q Consensus 105 l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 184 (369)
+..+++|+.|++++ +.+.. ++ .+..+++|+.|+|++|.+.+..| +..+++|++|+|++|.+.+ ++ .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~-n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcC-CCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 35567777777774 44442 33 36667777777777777774333 6677777777777777763 33 56677777
Q ss_pred cEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCC
Q 017578 185 MHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 185 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 264 (369)
++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 777777777764 2 3466777777777777777643 556677777777777777765444 666777777777777
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCccc
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGK 292 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 292 (369)
.+++. + .+.. ++|+.|+|++|.+.+.
T Consensus 186 ~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 76642 3 2333 6677777777766643
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=166.02 Aligned_cols=175 Identities=25% Similarity=0.260 Sum_probs=144.3
Q ss_pred CEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhcc-CCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcc
Q 017578 112 SSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIG-RLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLR 190 (369)
Q Consensus 112 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 190 (369)
+.+++++ +.+. .+|..+. +.+++|+|++|.+++..+..+. .+++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 21 ~~l~c~~-~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5788884 6665 4676553 4689999999999976666676 89999999999999997777789999999999999
Q ss_pred cCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhh---hCCCCCcEEeccCCcCc
Q 017578 191 NNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASL---GKMAVLATLNLDFNKLS 267 (369)
Q Consensus 191 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~ 267 (369)
+|.+....+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997777789999999999999999998889999999999999999999996444444 56899999999999998
Q ss_pred CCCCccccc-CC--CCEEEcccCcCc
Q 017578 268 GPIPASLMN-SG--ISNLNLSRNMLE 290 (369)
Q Consensus 268 ~~~~~~~~~-~~--L~~L~L~~n~l~ 290 (369)
+..+..+.. +. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 544334433 33 477888888876
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=4e-19 Score=174.55 Aligned_cols=189 Identities=22% Similarity=0.328 Sum_probs=146.4
Q ss_pred CCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcc
Q 017578 111 LSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLR 190 (369)
Q Consensus 111 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 190 (369)
+..+.+.. ..+....+ +..+++|+.|++++|.+. .++ .+..+++|++|+|++|.+.+ +++ +..+++|++|+|+
T Consensus 23 l~~l~l~~-~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKK-KSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTC-SCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECC
T ss_pred HHHHhccC-CCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECc
Confidence 33445553 44443332 456788999999999988 455 58889999999999999984 444 8889999999999
Q ss_pred cCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCC
Q 017578 191 NNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPI 270 (369)
Q Consensus 191 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 270 (369)
+|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 999874 33 688899999999999998852 4588888999999999988854 56788888999999888888655
Q ss_pred Cccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccccc
Q 017578 271 PASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGS 316 (369)
Q Consensus 271 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 316 (369)
| +.. ++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 5 433 8888888888888753 3577888888888888888754
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.1e-20 Score=186.30 Aligned_cols=255 Identities=7% Similarity=-0.032 Sum_probs=136.6
Q ss_pred cccCCCCCCEEecCCCCCCc----cccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCC--------
Q 017578 104 AVCKLTRLSSLTLADWKGIT----GEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNIS-------- 171 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~-------- 171 (369)
....+++|++|++++ +.+. +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.....
T Consensus 187 ~~~~~~~L~~L~L~~-n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYM-TEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHCCCCCEEECTT-CCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHhcCCCccEEEeec-cCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 344556666666663 4443 2233334456666666666666653 4455555555666655532111
Q ss_pred ------------------CcCCccccCCCCCcEEEcccCccCCCCC-CcccCCCCCCEEEcccccCCccCCchhcCCCCC
Q 017578 172 ------------------GAIPPSIANLSSLMHLDLRNNRISGPIP-GSVGRLRMMSRALLSRNQISGTIPSSISMIYRL 232 (369)
Q Consensus 172 ------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 232 (369)
..+|..+..+++|++|++++|.+++... ..+..+++|++|++.++...+.++.....+++|
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 1122223333444444444444321111 112344444444444221111222222445566
Q ss_pred CEEEee-----------cCCccccc-chhhhCCCCCcEEeccCCcCcCCCCccccc--CCCCEEEcc----cCcCccc--
Q 017578 233 ADLDLS-----------MNQISGMI-PASLGKMAVLATLNLDFNKLSGPIPASLMN--SGISNLNLS----RNMLEGK-- 292 (369)
Q Consensus 233 ~~L~l~-----------~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~----~n~l~~~-- 292 (369)
++|+++ .+.+++.. +.....+++|++|++..|.+++..+..+.. ++|++|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 666666 23444322 222344666777777666666554444433 667777775 5566542
Q ss_pred ---CCcccCCCCCCCEEEeeCCc--ccccchhhcc-CCCCCCEEEcccCcCce-eCCC-CCCCCCccccccccCCC
Q 017578 293 ---IPDVFGPRSYFTAIDLAYNK--LSGSIPRTLS-AASYIGHLDFSHNYLCG-RIPD-GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 293 ---~~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~-~l~~L~~L~ls~N~l~g-~ip~-~~~~~~L~~l~l~~N~~ 360 (369)
++..+..+++|++|+++.|. +++..+..+. .+++|++|++++|++++ .++. ...+++|+.|++++|+.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 23335567788888887543 6665555554 47889999999999876 3333 24578999999999983
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=6.4e-21 Score=187.90 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=171.4
Q ss_pred CccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCC-ccccCCCCCcEEEcccCccCCCCCCcccCC
Q 017578 127 PRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIP-PSIANLSSLMHLDLRNNRISGPIPGSVGRL 205 (369)
Q Consensus 127 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 205 (369)
+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 344566677777777765433 677778889999999999999764333 346789999999999443222333444678
Q ss_pred CCCCEEEccc-----------ccCCcc-CCchhcCCCCCCEEEeecCCcccccchhhhC-CCCCcEEecc----CCcCcC
Q 017578 206 RMMSRALLSR-----------NQISGT-IPSSISMIYRLADLDLSMNQISGMIPASLGK-MAVLATLNLD----FNKLSG 268 (369)
Q Consensus 206 ~~L~~L~l~~-----------n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~ 268 (369)
++|++|++.+ +.+++. ++.....+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 9999999993 555543 2233456899999999999999887777776 8999999996 567765
Q ss_pred C-----CCccccc-CCCCEEEcccCc--CcccCCcccC-CCCCCCEEEeeCCcccc-cchhhccCCCCCCEEEcccCcCc
Q 017578 269 P-----IPASLMN-SGISNLNLSRNM--LEGKIPDVFG-PRSYFTAIDLAYNKLSG-SIPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 269 ~-----~~~~~~~-~~L~~L~L~~n~--l~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
. ++..+.. ++|++|+++++. +++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 3 2222322 899999997543 6655444443 47899999999999987 45666688999999999999987
Q ss_pred ee-CCC-CCCCCCccccccccCCC
Q 017578 339 GR-IPD-GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 339 g~-ip~-~~~~~~L~~l~l~~N~~ 360 (369)
+. ++. ...+++|+.|++++|+.
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHHHHHHHhcCccCeeECcCCcC
Confidence 54 333 23578999999999984
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.9e-22 Score=195.65 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=140.1
Q ss_pred CCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCc-------------CCCcCCccccCCCCCcEEE-cccCccCC
Q 017578 131 SSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNN-------------ISGAIPPSIANLSSLMHLD-LRNNRISG 196 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~l~~ 196 (369)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. ..+..|..++++++|++|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 44566667777777666 566666666667666665443 2233344444445555444 333321
Q ss_pred CCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc
Q 017578 197 PIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN 276 (369)
Q Consensus 197 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 276 (369)
..|+.+.+.+|.++.. +. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..
T Consensus 423 ---------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 1233333444444321 11 248889999998885 565 888889999999999888 77777776
Q ss_pred -CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccc-hhhccCCCCCCEEEcccCcCceeCCCCC----CCCCc
Q 017578 277 -SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSI-PRTLSAASYIGHLDFSHNYLCGRIPDGS----PFDHL 350 (369)
Q Consensus 277 -~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~~----~~~~L 350 (369)
++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.+|... .+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 889999999999985 56 7888999999999999999776 8899999999999999999997776543 26777
Q ss_pred cccc
Q 017578 351 EASS 354 (369)
Q Consensus 351 ~~l~ 354 (369)
+.|+
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 7764
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.7e-18 Score=146.27 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=51.3
Q ss_pred CCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEE
Q 017578 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLD 236 (369)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 236 (369)
+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444444 333 3444444444444444332 122344445555555555555444444455555555555
Q ss_pred eecCCcccccchhhhCCCCCcEEeccCCc
Q 017578 237 LSMNQISGMIPASLGKMAVLATLNLDFNK 265 (369)
Q Consensus 237 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 265 (369)
+++|.+++..+..++.+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 55555554455555555555555555554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.8e-18 Score=146.17 Aligned_cols=152 Identities=18% Similarity=0.273 Sum_probs=110.3
Q ss_pred CCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCE
Q 017578 131 SSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSR 210 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 210 (369)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45667888888888887 556 6777888888888888654 3346777888888888888887767777888888888
Q ss_pred EEcccccCCccCCchhcCCCCCCEEEeecCC-cccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCc
Q 017578 211 ALLSRNQISGTIPSSISMIYRLADLDLSMNQ-ISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNM 288 (369)
Q Consensus 211 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 288 (369)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+.. ++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 8888888887777788888888888888887 54 455 57778888888888887764 22 2222 556666666665
Q ss_pred Cc
Q 017578 289 LE 290 (369)
Q Consensus 289 l~ 290 (369)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=6.9e-19 Score=155.57 Aligned_cols=170 Identities=21% Similarity=0.319 Sum_probs=139.5
Q ss_pred CCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEE
Q 017578 156 RLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADL 235 (369)
Q Consensus 156 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 235 (369)
.+.++..++++++.++ .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556777888888887 344 5788999999999999987 455 68899999999999999986444 8899999999
Q ss_pred EeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCccc
Q 017578 236 DLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 236 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 314 (369)
++++|.+++ +|. +.. ++|++|++++|.+++ ++ .+.. ++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999985 443 333 899999999999985 33 3444 8999999999999864 3 6888999999999999998
Q ss_pred ccchhhccCCCCCCEEEcccCcCcee
Q 017578 315 GSIPRTLSAASYIGHLDFSHNYLCGR 340 (369)
Q Consensus 315 ~~~p~~l~~l~~L~~L~ls~N~l~g~ 340 (369)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 66 6788999999999999998754
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.3e-19 Score=180.27 Aligned_cols=221 Identities=18% Similarity=0.185 Sum_probs=127.1
Q ss_pred CCCCEEecCCCCCCccccCccCCCCCCCC-----EEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCC
Q 017578 109 TRLSSLTLADWKGITGEIPRCISSIPFLR-----ILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSS 183 (369)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~-----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 183 (369)
++++.|++.. +.+.. .+..+.....|+ .+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~-n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeC-CCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 5577777764 44443 233222222222 2333334444 45777889999999999999998 88888889999
Q ss_pred CcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 184 LMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 184 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999998 88999999999999999999999 78999999999999999999997 7788899999999999999
Q ss_pred CcCcCCCCccccc--CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCC--------cccccchhhccCCCCCCEEEcc
Q 017578 264 NKLSGPIPASLMN--SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYN--------KLSGSIPRTLSAASYIGHLDFS 333 (369)
Q Consensus 264 n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~ls 333 (369)
|.+++.+|..+.. .....+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 9999888877654 23335789999999888764 455666666 3343444445566677777888
Q ss_pred cCcCceeCC
Q 017578 334 HNYLCGRIP 342 (369)
Q Consensus 334 ~N~l~g~ip 342 (369)
+|.+.+...
T Consensus 400 ~Nil~~~~~ 408 (727)
T 4b8c_D 400 YNTLCQHYA 408 (727)
T ss_dssp --CCCGGGC
T ss_pred ccccccccC
Confidence 888764443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.4e-21 Score=190.81 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=131.9
Q ss_pred ccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCc-------------CcccCChhccCCCCCCEEE-eecCcC
Q 017578 105 VCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNK-------------LSGDIPRDIGRLHRLAVLN-IADNNI 170 (369)
Q Consensus 105 l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~~ 170 (369)
+..+++|+.|++++ +.+. .+|..++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~-n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSV-EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCH-HHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCCh-hhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 36789999999995 6665 789999999999999998774 5567777888888999888 565543
Q ss_pred CCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhh
Q 017578 171 SGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASL 250 (369)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 250 (369)
. +|+.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+
T Consensus 423 ~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 423 D-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred c-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence 2 23334444444432111 135556666666553 444 566666666666666665 556666
Q ss_pred hCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccC-CcccCCCCCCCEEEeeCCcccccchh---hccCCC
Q 017578 251 GKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKI-PDVFGPRSYFTAIDLAYNKLSGSIPR---TLSAAS 325 (369)
Q Consensus 251 ~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~---~l~~l~ 325 (369)
+.+++|++|++++|.+++ +| .+.. ++|++|++++|.+++.. |..+..+++|+.|++++|++++..|. .+..++
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 666666666666666664 44 3333 66666666666666554 66677777777777777777654432 233467
Q ss_pred CCCEEEc
Q 017578 326 YIGHLDF 332 (369)
Q Consensus 326 ~L~~L~l 332 (369)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 7777754
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-18 Score=152.26 Aligned_cols=170 Identities=19% Similarity=0.316 Sum_probs=114.3
Q ss_pred CCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcE
Q 017578 107 KLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMH 186 (369)
Q Consensus 107 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 186 (369)
++.+++.+++++ +.+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +.++++|++
T Consensus 17 ~l~~l~~l~l~~-~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcC-CCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCE
Confidence 345556666764 555532 2 3567788888888888887 455 67778888888888888873 444 778888888
Q ss_pred EEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcC
Q 017578 187 LDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKL 266 (369)
Q Consensus 187 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 266 (369)
|++++|.+.+ ++.. .. ++|++|++++|++++. +.+..+++|+.|++++|++++. + .+..+++|++|++++|.+
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 8888888774 3332 22 7777777777777642 3467777777777777777643 3 566777777777777777
Q ss_pred cCCCCccccc-CCCCEEEcccCcCccc
Q 017578 267 SGPIPASLMN-SGISNLNLSRNMLEGK 292 (369)
Q Consensus 267 ~~~~~~~~~~-~~L~~L~L~~n~l~~~ 292 (369)
++. ..+.. ++|+.|++++|.+++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 654 22333 6677777777766643
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=7.2e-18 Score=141.81 Aligned_cols=132 Identities=27% Similarity=0.372 Sum_probs=75.6
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCc-cccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEccc
Q 017578 137 RILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPP-SIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSR 215 (369)
Q Consensus 137 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 215 (369)
++++++++.++ .+|..+.. +|++|++++|.+++..+. .+.++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 44544322 555666666655533332 255556666666666666555555566666666666666
Q ss_pred ccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCC
Q 017578 216 NQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIP 271 (369)
Q Consensus 216 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 271 (369)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66665555555666666666666666665556666666666666666666655443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.8e-18 Score=142.39 Aligned_cols=176 Identities=16% Similarity=0.268 Sum_probs=135.8
Q ss_pred cEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCc-hhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccC
Q 017578 185 MHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPS-SISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDF 263 (369)
Q Consensus 185 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 263 (369)
+++++++|.+. .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999996 67776543 899999999999876654 488999999999999999988889999999999999999
Q ss_pred CcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhh-ccCCCCCCEEEcccCcCceeC
Q 017578 264 NKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRT-LSAASYIGHLDFSHNYLCGRI 341 (369)
Q Consensus 264 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~i 341 (369)
|.+++..+..+.. ++|++|++++|++++..|..+..+++|++|++++|.+.+..+.. +.. .++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 9999877776666 99999999999999988999999999999999999998776521 111 0111122233333333
Q ss_pred CCCCCCCCccccccccCCCcccCCCC
Q 017578 342 PDGSPFDHLEASSFAYNKCLCGKPLR 367 (369)
Q Consensus 342 p~~~~~~~L~~l~l~~N~~~c~~~l~ 367 (369)
|. .+......++..+.+.|..+..
T Consensus 166 P~--~l~~~~l~~l~~~~~~C~~~~~ 189 (192)
T 1w8a_A 166 PS--KVRDVQIKDLPHSEFKCSSENS 189 (192)
T ss_dssp ST--TTTTSBGGGSCTTTCCCCCC--
T ss_pred Ch--HHcCCChhhCcHhhcCcCCCCC
Confidence 43 4555666678888888887643
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.5e-19 Score=178.14 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=82.9
Q ss_pred CCCCCEEEeecCCcccccchhhh-CCCCCcEEecc--C----CcCcCCCCc-----cccc-CCCCEEEcccCcCcccCCc
Q 017578 229 IYRLADLDLSMNQISGMIPASLG-KMAVLATLNLD--F----NKLSGPIPA-----SLMN-SGISNLNLSRNMLEGKIPD 295 (369)
Q Consensus 229 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~~~-----~~~~-~~L~~L~L~~n~l~~~~~~ 295 (369)
+++|+.|.++.+.+++..+..+. .+++|++|+++ + +.+++.... .+.. ++|++|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 45566665555555544444443 46677777776 3 344321111 1112 6777777766 55544444
Q ss_pred ccCC-CCCCCEEEeeCCcccccchhhc-cCCCCCCEEEcccCcCceeCCC--CCCCCCccccccccCCC
Q 017578 296 VFGP-RSYFTAIDLAYNKLSGSIPRTL-SAASYIGHLDFSHNYLCGRIPD--GSPFDHLEASSFAYNKC 360 (369)
Q Consensus 296 ~~~~-~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip~--~~~~~~L~~l~l~~N~~ 360 (369)
.+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ...+++|+.|++++|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4443 7889999999998877655555 6688999999999988643322 23478899999988875
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=8.4e-20 Score=179.93 Aligned_cols=107 Identities=9% Similarity=0.038 Sum_probs=66.8
Q ss_pred CCCCcEEeccCCcCcCCCCccccc--CCCCEEEcc--c----CcCccc-----CCcccCCCCCCCEEEeeCCcccccchh
Q 017578 253 MAVLATLNLDFNKLSGPIPASLMN--SGISNLNLS--R----NMLEGK-----IPDVFGPRSYFTAIDLAYNKLSGSIPR 319 (369)
Q Consensus 253 l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~--~----n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~p~ 319 (369)
+++|++|.+..|.+++.....+.. ++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 455555555555555433333332 677777777 3 444421 112245567788888866 66665555
Q ss_pred hccC-CCCCCEEEcccCcCceeCCC-C-CCCCCccccccccCCC
Q 017578 320 TLSA-ASYIGHLDFSHNYLCGRIPD-G-SPFDHLEASSFAYNKC 360 (369)
Q Consensus 320 ~l~~-l~~L~~L~ls~N~l~g~ip~-~-~~~~~L~~l~l~~N~~ 360 (369)
.+.. +++|+.|++++|.+++..+. . ..+++|+.|++++|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 5555 88899999999988754332 1 2478999999999986
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=137.20 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=81.5
Q ss_pred EEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCc
Q 017578 234 DLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNK 312 (369)
Q Consensus 234 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 312 (369)
.++++++.++ .+|..+. ++|++|++++|.++ .+|..+.. ++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555554 3443322 35666666666665 44444444 666666666666666666667777777777777777
Q ss_pred ccccchhhccCCCCCCEEEcccCcCceeCCC-CCCCCCccccccccCCCcccCCC
Q 017578 313 LSGSIPRTLSAASYIGHLDFSHNYLCGRIPD-GSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 313 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
+++..+..+..+++|++|+|++|++++..+. ...+++|+.+++++||+.|+|++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 7766666677777777777777777743332 34567777777777777777764
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=5e-17 Score=133.51 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=84.6
Q ss_pred CCCCEEEcCCCcCc-ccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEE
Q 017578 134 PFLRILDLIGNKLS-GDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRAL 212 (369)
Q Consensus 134 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 212 (369)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56667777777665 55666666666777777777766633 5566666677777776666655555555566666666
Q ss_pred cccccCCccC-CchhcCCCCCCEEEeecCCcccccc---hhhhCCCCCcEEeccCCcCc
Q 017578 213 LSRNQISGTI-PSSISMIYRLADLDLSMNQISGMIP---ASLGKMAVLATLNLDFNKLS 267 (369)
Q Consensus 213 l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 267 (369)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666421 2556666777777777776664433 35666777777777777665
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.8e-16 Score=130.20 Aligned_cols=132 Identities=20% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCcEEEcccCccC-CCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEe
Q 017578 182 SSLMHLDLRNNRIS-GPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLN 260 (369)
Q Consensus 182 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 260 (369)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP------ 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC------
Confidence 45666666666555 44555555555555555555555533 4444455555555555555443444444444
Q ss_pred ccCCcCcCCCCcccccCCCCEEEcccCcCcccC-CcccCCCCCCCEEEeeCCcccccch---hhccCCCCCCEEEcccCc
Q 017578 261 LDFNKLSGPIPASLMNSGISNLNLSRNMLEGKI-PDVFGPRSYFTAIDLAYNKLSGSIP---RTLSAASYIGHLDFSHNY 336 (369)
Q Consensus 261 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~N~ 336 (369)
+|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 96 -----------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 -----------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -----------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -----------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4555555555554321 2456666777777777777774443 366777777777777777
Q ss_pred Cc
Q 017578 337 LC 338 (369)
Q Consensus 337 l~ 338 (369)
+.
T Consensus 159 ~~ 160 (168)
T 2ell_A 159 DQ 160 (168)
T ss_dssp SC
T ss_pred hh
Confidence 65
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=7.8e-17 Score=129.61 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=64.0
Q ss_pred CCCCEEEcCCCcCc-ccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEE
Q 017578 134 PFLRILDLIGNKLS-GDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRAL 212 (369)
Q Consensus 134 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 212 (369)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44444445555555555555555422 3444455555555555555443444444455555555
Q ss_pred cccccCCcc-CCchhcCCCCCCEEEeecCCcccccc---hhhhCCCCCcEEecc
Q 017578 213 LSRNQISGT-IPSSISMIYRLADLDLSMNQISGMIP---ASLGKMAVLATLNLD 262 (369)
Q Consensus 213 l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 262 (369)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555432 22445555555555555555554333 345556666666554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=7.9e-16 Score=129.33 Aligned_cols=109 Identities=23% Similarity=0.335 Sum_probs=57.1
Q ss_pred CCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEc
Q 017578 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 213 (369)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 213 (369)
++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35555555555555 44555555555555555555555444444555555555555555555444444555555555555
Q ss_pred ccccCCccCCchhcCCCCCCEEEeecCCcc
Q 017578 214 SRNQISGTIPSSISMIYRLADLDLSMNQIS 243 (369)
Q Consensus 214 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (369)
++|.++...+..+..+++|+.|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555433334444555555555555443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.7e-16 Score=127.58 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=106.5
Q ss_pred CCCCCEEecCCCCCCc-cccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcE
Q 017578 108 LTRLSSLTLADWKGIT-GEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMH 186 (369)
Q Consensus 108 l~~L~~L~l~~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 186 (369)
.++|+.|++++ +.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 46788999985 6676 67888888899999999999998854 67888999999999999998667777778899999
Q ss_pred EEcccCccCCC-CCCcccCCCCCCEEEcccccCCccCC---chhcCCCCCCEEEeec
Q 017578 187 LDLRNNRISGP-IPGSVGRLRMMSRALLSRNQISGTIP---SSISMIYRLADLDLSM 239 (369)
Q Consensus 187 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~ 239 (369)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998753 33678889999999999999886655 5788889999988753
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.9e-15 Score=125.21 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=55.5
Q ss_pred CCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEc
Q 017578 134 PFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 213 (369)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 213 (369)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45555555555555333334455555555555555555333333455555555555555555444444445555555555
Q ss_pred ccccCCccCCchhcCCCCCCEEEeecCCccc
Q 017578 214 SRNQISGTIPSSISMIYRLADLDLSMNQISG 244 (369)
Q Consensus 214 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 244 (369)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5555553333334444555555555555443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=126.67 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=92.8
Q ss_pred CCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEccc
Q 017578 208 MSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSR 286 (369)
Q Consensus 208 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 286 (369)
.+.+++.+++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 344333 357888888888887655556677788888888888877544444444 7788888888
Q ss_pred CcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCC
Q 017578 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIP 342 (369)
Q Consensus 287 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 342 (369)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88776666667777778888888887775555555677777788887777776554
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=4.9e-16 Score=141.83 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=119.3
Q ss_pred CCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccC----CccCCchhcCCC--
Q 017578 157 LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQI----SGTIPSSISMIY-- 230 (369)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l~-- 230 (369)
+++|+.|+|.+ .++...+.+|.++++|+++++.+|.+....+..|....++..+....+.. ......++..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777776 55544445566777777777777766555555666655555555443111 111112222222
Q ss_pred ------------------------CCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcc
Q 017578 231 ------------------------RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLS 285 (369)
Q Consensus 231 ------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~ 285 (369)
+++.+.+.++-...........+++|+++++.+|.++...+..+.. .+|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3333444333211111111123788999999988887444445554 789999998
Q ss_pred cCcCcccCCcccCCCCCCC-EEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCC--CCCCCCccccc
Q 017578 286 RNMLEGKIPDVFGPRSYFT-AIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPD--GSPFDHLEASS 354 (369)
Q Consensus 286 ~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~L~~l~ 354 (369)
+| ++...+.+|.++.+|+ .+++.+ .++..-+..|.++++|+.+++++|+++ .|+. ....++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 87 7767778889999999 999988 677566688889999999999888888 4443 22344555543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.3e-15 Score=122.38 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=62.3
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEE
Q 017578 132 SIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRA 211 (369)
Q Consensus 132 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 211 (369)
++++|++|++++|.++ .+|......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555555555 2332222222555555555555532 344455555555555555543322223455555555
Q ss_pred EcccccCCccCCc--hhcCCCCCCEEEeecCCcccccch----hhhCCCCCcEEeccCCcC
Q 017578 212 LLSRNQISGTIPS--SISMIYRLADLDLSMNQISGMIPA----SLGKMAVLATLNLDFNKL 266 (369)
Q Consensus 212 ~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 266 (369)
++++|.+. .+|. .+..+++|+.|++++|.++ ..|. .+..+++|++|++++|.+
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555553 2332 4455555555555555554 2333 245555555555555543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.4e-14 Score=119.16 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=70.0
Q ss_pred CcEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccC
Q 017578 256 LATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335 (369)
Q Consensus 256 L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N 335 (369)
.+++++++|.++ .+|..+. +++++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcC-ccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666665 3444332 56677777777777666666677777777777777777555555666777777777777
Q ss_pred cCceeCCC-CCCCCCccccccccCCCcccCC
Q 017578 336 YLCGRIPD-GSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 336 ~l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
++++..+. ...+++|+.|++++|++.|+|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77654443 3456667777777777777764
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=3.1e-17 Score=138.60 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=90.8
Q ss_pred cCCCCCCEEecCCCCCCccccCc------cCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCcccc
Q 017578 106 CKLTRLSSLTLADWKGITGEIPR------CISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIA 179 (369)
Q Consensus 106 ~~l~~L~~L~l~~~~~~~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 179 (369)
.....++.++++. +.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~-~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEK-VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSE-EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchhe-eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3344455555542 444444443 56666777777777777763 55 6666777777777777766 5666666
Q ss_pred CCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCC-chhcCCCCCCEEEeecCCcccccch----------
Q 017578 180 NLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIP-SSISMIYRLADLDLSMNQISGMIPA---------- 248 (369)
Q Consensus 180 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~---------- 248 (369)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66677777777776664 33 45666667777777776664222 3566666677777777666554433
Q ss_pred hhhCCCCCcEEe
Q 017578 249 SLGKMAVLATLN 260 (369)
Q Consensus 249 ~l~~l~~L~~L~ 260 (369)
.+..+++|++|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 255666666665
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7.3e-17 Score=136.30 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=79.1
Q ss_pred CCCCCCEEEeecCcCCCcCCc------cccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCC
Q 017578 156 RLHRLAVLNIADNNISGAIPP------SIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMI 229 (369)
Q Consensus 156 ~l~~L~~L~L~~n~~~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 229 (369)
....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~---------- 83 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK---------- 83 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC----------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc----------
Confidence 344555555555555544443 44455555555555555443 33 4444444444444444444
Q ss_pred CCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCC-cccCCCCCCCEEE
Q 017578 230 YRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIP-DVFGPRSYFTAID 307 (369)
Q Consensus 230 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ 307 (369)
.+|..+..+++|++|++++|.+++ +| .+.. ++|++|++++|.+++..+ ..+..+++|++|+
T Consensus 84 ---------------~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 84 ---------------KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp ---------------SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ---------------cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 334444444445555555555443 22 1222 555555555555553221 3466677777777
Q ss_pred eeCCcccccchh----------hccCCCCCCEEEcccCcCc
Q 017578 308 LAYNKLSGSIPR----------TLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 308 L~~n~l~~~~p~----------~l~~l~~L~~L~ls~N~l~ 338 (369)
+++|.+.+.+|. .+..+++|+.|| +|.++
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777665554 266777888776 45444
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.7e-14 Score=117.02 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=67.0
Q ss_pred cEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCc
Q 017578 257 ATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNY 336 (369)
Q Consensus 257 ~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 336 (369)
+.+++++|.++ .+|..+. +++++|++++|.+++..|..+..+++|++|+|++|+|++..+..+..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 45666666664 4444433 566666666666666666666666677777777777665444445666777777777777
Q ss_pred CceeCCC-CCCCCCccccccccCCCcccCC
Q 017578 337 LCGRIPD-GSPFDHLEASSFAYNKCLCGKP 365 (369)
Q Consensus 337 l~g~ip~-~~~~~~L~~l~l~~N~~~c~~~ 365 (369)
+++..+. ...+++|+.|++++|++.|+|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6644333 3456666777777777777664
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.6e-14 Score=131.81 Aligned_cols=220 Identities=12% Similarity=0.052 Sum_probs=156.2
Q ss_pred CCCCCEEecCCCCCCc----------c---------cc-CccCCC--------CCCCCEEEcCCCcCcccCChhccCCCC
Q 017578 108 LTRLSSLTLADWKGIT----------G---------EI-PRCISS--------IPFLRILDLIGNKLSGDIPRDIGRLHR 159 (369)
Q Consensus 108 l~~L~~L~l~~~~~~~----------~---------~~-p~~~~~--------l~~L~~L~L~~n~l~~~~p~~~~~l~~ 159 (369)
+++|+.|+|++ +.+. . .+ +..|.+ +++|+.|++.+ .++...+..|.++++
T Consensus 48 l~~L~~LdLs~-n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISN-AEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEE-EEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCc-ceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 77788888874 4433 0 12 234566 89999999988 787555567889999
Q ss_pred CCEEEeecCcCCCcCCccccCCCCCcEEEcccCcc----CCCCCCcccCCCCCC--------------------------
Q 017578 160 LAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRI----SGPIPGSVGRLRMMS-------------------------- 209 (369)
Q Consensus 160 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L~-------------------------- 209 (369)
|+.+++++|.+....+..|.++.++.++....+.. .......+..+..|+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 99999999988756666777777777776655321 111222333334443
Q ss_pred EEEcccccCCccCCchh-cCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCC-EEEccc
Q 017578 210 RALLSRNQISGTIPSSI-SMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGIS-NLNLSR 286 (369)
Q Consensus 210 ~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~-~L~L~~ 286 (369)
.+.+.++-.. .....+ ..+++|+.+++++|.++...+..|.++.+|+++++.+| ++...+..+.. .+|+ .+++.+
T Consensus 206 ~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 3333322111 001111 23789999999999998766778999999999999997 66444445555 8899 999998
Q ss_pred CcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEc
Q 017578 287 NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDF 332 (369)
Q Consensus 287 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 332 (369)
.++...+.+|.++++|+.+++++|++....+..|.++++|+.++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 788777899999999999999999999777778999999999864
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.4e-14 Score=118.37 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=69.1
Q ss_pred ccCCCCCcEEEcccCccCCCCCCcccCCC-CCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCC
Q 017578 178 IANLSSLMHLDLRNNRISGPIPGSVGRLR-MMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVL 256 (369)
Q Consensus 178 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 256 (369)
+.++.+|++|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445566677777776666 3333 33332 566666666665543 345555555555555555553322333455555
Q ss_pred cEEeccCCcCcCCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchh----hccCCCCCCEEEc
Q 017578 257 ATLNLDFNKLSGPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPR----TLSAASYIGHLDF 332 (369)
Q Consensus 257 ~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l 332 (369)
++|++++|.++ .+|. ...+..+++|+.|++++|.++ .+|. .+..+++|+.||+
T Consensus 91 ~~L~L~~N~i~-~~~~---------------------~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 91 TELILTNNSLV-ELGD---------------------LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CEEECCSCCCC-CGGG---------------------GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred CEEECCCCcCC-cchh---------------------hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 55555555543 2222 013445555555555555555 3333 2555666666666
Q ss_pred ccCcCc
Q 017578 333 SHNYLC 338 (369)
Q Consensus 333 s~N~l~ 338 (369)
++|.+.
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 666543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=1.3e-12 Score=122.17 Aligned_cols=229 Identities=9% Similarity=0.042 Sum_probs=160.5
Q ss_pred ceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCc
Q 017578 97 MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPP 176 (369)
Q Consensus 97 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~ 176 (369)
+...-..++.++ +|+.+.+. .++...-..+|.++ +|+.+++.. .+...-+..|.++++|+.+++.+|.++ .++.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~--~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~ 197 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLN--EGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPA 197 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECC--TTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECT
T ss_pred cCEehHhhcccC-CccEEEeC--CCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eech
Confidence 333334455554 78888887 34554445566664 688888875 565444567888889999999888887 4444
Q ss_pred cccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCC
Q 017578 177 SIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVL 256 (369)
Q Consensus 177 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 256 (369)
......+|+.+.+..+ +...-...|..+++|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++......|.++++|
T Consensus 198 ~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 198 STFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTC
T ss_pred hhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCC
Confidence 4334688888888754 55555667888888998888764 44445566666 7888888844 4554556788888889
Q ss_pred cEEeccCCcCc-----CCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEE
Q 017578 257 ATLNLDFNKLS-----GPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHL 330 (369)
Q Consensus 257 ~~L~L~~n~l~-----~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 330 (369)
+++.+.+|.+. ...+..+.. ++|+.+++. +.++.....+|..+.+|+.+.+.++ ++..-..+|..+ +|+.+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 99988887664 122233333 788888888 4577666778888889999988655 654556678888 89999
Q ss_pred EcccCcCc
Q 017578 331 DFSHNYLC 338 (369)
Q Consensus 331 ~ls~N~l~ 338 (369)
++++|.+.
T Consensus 351 ~l~~n~~~ 358 (401)
T 4fdw_A 351 KVEGTTPP 358 (401)
T ss_dssp EECCSSCC
T ss_pred EEcCCCCc
Confidence 99888765
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=2.1e-12 Score=120.61 Aligned_cols=215 Identities=10% Similarity=0.066 Sum_probs=86.7
Q ss_pred CCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEc
Q 017578 110 RLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 189 (369)
Q Consensus 110 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 189 (369)
+|+.+.+. +.+...-...|.++++|+.+++.+|.++ .++.......+|+.+.+..+ +...-...|.++++|+.+++
T Consensus 158 ~L~~i~lp--~~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFP--STLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECC--TTCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeC--CCccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 34444444 2333222334444455555555444444 22222212344555544422 33222334444445555554
Q ss_pred ccCccCCCCCCcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcc-----cccchhhhCCCCCcEEeccCC
Q 017578 190 RNNRISGPIPGSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQIS-----GMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 190 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n 264 (369)
..+ +...-...|.. .+|+.+.+. +.++..-..+|.++++|+.+++.++.+. ...+..|.++++|+.+.+..
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 432 22222223333 444444442 2233233344444445555554444332 12233444444555555442
Q ss_pred cCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCC-CCCEEEccc
Q 017578 265 KLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAAS-YIGHLDFSH 334 (369)
Q Consensus 265 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~ls~ 334 (369)
.++......+.. .+|+.+.+..+ ++.....+|.++ +|+.+++.+|.+....+..+..++ +++.|.+..
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 233222222222 44555554332 333334444444 455555554444433333333332 344444433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2.6e-13 Score=111.51 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEccc
Q 017578 136 LRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSR 215 (369)
Q Consensus 136 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 215 (369)
.+++++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 355666666666 4554442 5566666666666655555566666666666666666654444556666666666666
Q ss_pred ccCCccCCchhcCCCCCCEEEeecCCccc
Q 017578 216 NQISGTIPSSISMIYRLADLDLSMNQISG 244 (369)
Q Consensus 216 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 244 (369)
|++++..+..+..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665444456666666666666666553
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=5.3e-13 Score=110.00 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=53.4
Q ss_pred CEEEcCCCcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEcccCccCCCCCCcccCCCCCCEEEcccc
Q 017578 137 RILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALLSRN 216 (369)
Q Consensus 137 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 216 (369)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 4444332 45555555555555444445555555555555555555433333455555555555555
Q ss_pred cCCccCCchhcCCCCCCEEEeecCCcc
Q 017578 217 QISGTIPSSISMIYRLADLDLSMNQIS 243 (369)
Q Consensus 217 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (369)
++++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555433333555555555555555554
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=6.3e-13 Score=121.98 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=63.4
Q ss_pred EEeccCC-cCcCCCCccccc-CCCCEEEccc-CcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEccc
Q 017578 258 TLNLDFN-KLSGPIPASLMN-SGISNLNLSR-NMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSH 334 (369)
Q Consensus 258 ~L~L~~n-~l~~~~~~~~~~-~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~ 334 (369)
.++++++ .++ .+|. +.. ++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455554 454 3444 433 5566666664 666655556666666666666666666666666666666666666666
Q ss_pred CcCceeCCCCCCCCCccccccccCCCcccCCC
Q 017578 335 NYLCGRIPDGSPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 335 N~l~g~ip~~~~~~~L~~l~l~~N~~~c~~~l 366 (369)
|+|++..+.......|+.|++.+|++.|+|.+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 66664333322222366667777777776654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=2.6e-14 Score=132.31 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=102.6
Q ss_pred CCCCCEEEeecCcCCCcCCccccC-----CCCCcEEEcccCccCCCCCCcc-cCCCCCCEEEcccccCCccCCchh----
Q 017578 157 LHRLAVLNIADNNISGAIPPSIAN-----LSSLMHLDLRNNRISGPIPGSV-GRLRMMSRALLSRNQISGTIPSSI---- 226 (369)
Q Consensus 157 l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l---- 226 (369)
++.|++|++++|.++......+.. ..+|++|++++|.++......+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999998887433333322 2688888888888753222222 235677888888887765433333
Q ss_pred -cCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCC----Cccccc-CCCCEEEcccCcCccc----
Q 017578 227 -SMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPI----PASLMN-SGISNLNLSRNMLEGK---- 292 (369)
Q Consensus 227 -~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~-~~L~~L~L~~n~l~~~---- 292 (369)
...++|++|++++|.++.. ++..+...++|++|+|++|.+++.. +..+.. ++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456788888888877642 3444466777888888887776432 222222 6677777777777643
Q ss_pred CCcccCCCCCCCEEEeeCCcccccchhhcc
Q 017578 293 IPDVFGPRSYFTAIDLAYNKLSGSIPRTLS 322 (369)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 322 (369)
++..+...++|++|+|++|.|++.....+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 233344456677777777777655444443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.2e-14 Score=134.53 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=90.7
Q ss_pred CCCCEEEcCCCcCcccCChhcc-----CCCCCCEEEeecCcCCCcCCccc-cCCCCCcEEEcccCccCCCCCCcc-----
Q 017578 134 PFLRILDLIGNKLSGDIPRDIG-----RLHRLAVLNIADNNISGAIPPSI-ANLSSLMHLDLRNNRISGPIPGSV----- 202 (369)
Q Consensus 134 ~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l----- 202 (369)
+.|++|++++|.++......+. ..++|++|+|++|.++......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555432222221 12455555555555542212222 223455666666665542211111
Q ss_pred cCCCCCCEEEcccccCCc----cCCchhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCCccc
Q 017578 203 GRLRMMSRALLSRNQISG----TIPSSISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIPASL 274 (369)
Q Consensus 203 ~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 274 (369)
...++|++|++++|.++. .++..+...++|++|++++|.+++. ++..+...++|++|++++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234566666666666643 2334445666777777777776543 24455566677777777777764332222
Q ss_pred c----c-CCCCEEEcccCcCcccCCcccCCC---C--CCCEEE--eeCCccc
Q 017578 275 M----N-SGISNLNLSRNMLEGKIPDVFGPR---S--YFTAID--LAYNKLS 314 (369)
Q Consensus 275 ~----~-~~L~~L~L~~n~l~~~~~~~~~~~---~--~L~~L~--L~~n~l~ 314 (369)
. . ++|++|+|++|.+++.....+... . .++.+. +..+.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 2 1 677777777777765433333221 1 155555 5555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.5e-11 Score=112.77 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=79.2
Q ss_pred EEecCCCCCCccccCccCCCCCCCCEEEcCC-CcCcccCChhccCCCCCCEEEeecCcCCCcCCccccCCCCCcEEEccc
Q 017578 113 SLTLADWKGITGEIPRCISSIPFLRILDLIG-NKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 191 (369)
Q Consensus 113 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 191 (369)
.++.++.+.+. .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45666422565 4777 88888888888885 888866667788888888888888888877777788888888888888
Q ss_pred CccCCCCCCcccCCCCCCEEEcccccCCc
Q 017578 192 NRISGPIPGSVGRLRMMSRALLSRNQISG 220 (369)
Q Consensus 192 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 220 (369)
|.+++..+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888855555555554 8888888887763
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=3.9e-11 Score=110.23 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCCCcEEeccCCcCcCCCCcccc----cCCCCEEEcccCcCccc----CCcccCCCCCCCEEEeeCCcccccchhhccC-
Q 017578 253 MAVLATLNLDFNKLSGPIPASLM----NSGISNLNLSRNMLEGK----IPDVFGPRSYFTAIDLAYNKLSGSIPRTLSA- 323 (369)
Q Consensus 253 l~~L~~L~L~~n~l~~~~~~~~~----~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~- 323 (369)
+++|++|++.+|.+.+..+..+. .++|++|+|+.|.+++. ++..+..+++|+.|++++|.+++..-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 55666666666665533322222 15677777777766643 2233344567777777777776554444443
Q ss_pred CCCCCEEEcccCc
Q 017578 324 ASYIGHLDFSHNY 336 (369)
Q Consensus 324 l~~L~~L~ls~N~ 336 (369)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456777665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=2.2e-10 Score=105.22 Aligned_cols=135 Identities=10% Similarity=0.140 Sum_probs=82.7
Q ss_pred ccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhh--CCCCCcEEeccC--CcCcCC-----CCc
Q 017578 202 VGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLG--KMAVLATLNLDF--NKLSGP-----IPA 272 (369)
Q Consensus 202 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~-----~~~ 272 (369)
+..+|+|+.|.+.++.-. .++. + .+++|+.|++..+.+.......+. .+++|++|+|+. +...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344455555555554211 1222 2 256677777776666544444443 567777777642 111111 111
Q ss_pred ccc---cCCCCEEEcccCcCcccCCccc---CCCCCCCEEEeeCCccccc----chhhccCCCCCCEEEcccCcCce
Q 017578 273 SLM---NSGISNLNLSRNMLEGKIPDVF---GPRSYFTAIDLAYNKLSGS----IPRTLSAASYIGHLDFSHNYLCG 339 (369)
Q Consensus 273 ~~~---~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~g 339 (369)
.+. .++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 121 2899999999999875433222 3578999999999999874 34445667999999999998864
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=4e-08 Score=91.52 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCC--CCCCCccccc
Q 017578 277 SGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDG--SPFDHLEASS 354 (369)
Q Consensus 277 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~L~~l~ 354 (369)
.+|+.+.+..+ ++.....+|..+.+|+.+++.++ ++..-..+|.++.+|+.+++..+ ++ .|+.. ....+|+.++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVE 372 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEE
Confidence 66777776543 44455566777777777777643 44344556777777777777655 43 44431 2334566665
Q ss_pred ccc
Q 017578 355 FAY 357 (369)
Q Consensus 355 l~~ 357 (369)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.85 E-value=1.7e-07 Score=87.16 Aligned_cols=127 Identities=9% Similarity=0.128 Sum_probs=67.6
Q ss_pred hhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCCCEEEcccCcCcccCCcccCCCCCC
Q 017578 225 SISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGISNLNLSRNMLEGKIPDVFGPRSYF 303 (369)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L 303 (369)
+|..+..|+.+.+..+... .....+.++.+|+.+.+.. .++......+.. .+|+.+++..+ ++.....+|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3455556666666544322 3344556666677777643 333222233333 67777777653 554556677777778
Q ss_pred CEEEeeCCcccccchhhccCCCCCCEEEcccCcCceeCCCCCCCCCcccccccc
Q 017578 304 TAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYLCGRIPDGSPFDHLEASSFAY 357 (369)
Q Consensus 304 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~L~~l~l~~ 357 (369)
+.+.+..+ ++..-..+|.++++|+.+++.++.... .......+|+.+.+..
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC-------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCC
Confidence 87777644 543445667777788888777764321 1112334555555543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=7.7e-08 Score=89.59 Aligned_cols=129 Identities=8% Similarity=0.011 Sum_probs=87.2
Q ss_pred CcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CC
Q 017578 200 GSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SG 278 (369)
Q Consensus 200 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~ 278 (369)
..+.....++.+.+..+... .....+.....++.+......+ ....+..+.+|+.+.+..+ ++......+.. .+
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCC
Confidence 34555666666666554332 3445566666777666655432 2245667888999888654 44333344544 88
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccC
Q 017578 279 ISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335 (369)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N 335 (369)
|+.+++..+ ++.....+|.++.+|+.+.+..+ +...-..+|.++++|+.+++..+
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999999754 66566788899999999999876 66455677889999999988654
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=2.9e-09 Score=88.35 Aligned_cols=115 Identities=11% Similarity=0.182 Sum_probs=72.2
Q ss_pred chhcCCCCCCEEEeecC-Ccccc----cchhhhCCCCCcEEeccCCcCcCCCCcccc----c-CCCCEEEcccCcCccc-
Q 017578 224 SSISMIYRLADLDLSMN-QISGM----IPASLGKMAVLATLNLDFNKLSGPIPASLM----N-SGISNLNLSRNMLEGK- 292 (369)
Q Consensus 224 ~~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~-~~L~~L~L~~n~l~~~- 292 (369)
..+...+.|++|++++| .+... +...+...++|++|+|++|.+.......+. . +.|++|+|++|.+++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33455566666666666 55432 233444556677777777766543322222 1 6677777777777643
Q ss_pred ---CCcccCCCCCCCEEEe--eCCccccc----chhhccCCCCCCEEEcccCcCc
Q 017578 293 ---IPDVFGPRSYFTAIDL--AYNKLSGS----IPRTLSAASYIGHLDFSHNYLC 338 (369)
Q Consensus 293 ---~~~~~~~~~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 338 (369)
+...+...+.|++|+| ++|.+.+. +...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666677888888 77887754 3455566688888888888764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.73 E-value=5.1e-10 Score=97.86 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=36.3
Q ss_pred cCCCCCCEEEeecCcCCC--cCCccccCCCCCcEEEcccCccCCCCCCcccCCC--CCCEEEcccccCCc
Q 017578 155 GRLHRLAVLNIADNNISG--AIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLR--MMSRALLSRNQISG 220 (369)
Q Consensus 155 ~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~ 220 (369)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ..+..+. +|++|++.+|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 456677777777777764 3344555667777777777766532 1222222 45555555555543
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=1.8e-06 Score=80.28 Aligned_cols=131 Identities=8% Similarity=0.141 Sum_probs=90.9
Q ss_pred CcccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CC
Q 017578 200 GSVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SG 278 (369)
Q Consensus 200 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~ 278 (369)
..|..+.+|+.+.+..+... ....++.++..|+.+.+.. .++......|.++.+|+++.+..+ ++......+.. .+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35667788888888765433 4567788899999999964 455455678889999999999764 54333445555 89
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccCcC
Q 017578 279 ISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 337 (369)
|+++.+..+ ++.....+|.++.+|+.+++.++... -..+.....|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999754 76566788999999999999988653 24677788899988876654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.4e-08 Score=84.13 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=48.8
Q ss_pred hhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCC----ccccc-CCCCEEEc--ccCcCccc-
Q 017578 225 SISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIP----ASLMN-SGISNLNL--SRNMLEGK- 292 (369)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~-~~L~~L~L--~~n~l~~~- 292 (369)
.+...++|++|++++|.+... +...+...++|++|+|++|.+.+... ..+.. +.|++|+| ++|.++..
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 334445555566665555432 22333444566666666666654321 22222 56677777 66666543
Q ss_pred ---CCcccCCCCCCCEEEeeCCccc
Q 017578 293 ---IPDVFGPRSYFTAIDLAYNKLS 314 (369)
Q Consensus 293 ---~~~~~~~~~~L~~L~L~~n~l~ 314 (369)
+...+...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334445567777777777765
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=3.9e-05 Score=70.70 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=33.9
Q ss_pred ceeecCccccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCCCcCcccCCh-hccCCCCCCEEEeec
Q 017578 97 MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPR-DIGRLHRLAVLNIAD 167 (369)
Q Consensus 97 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~ 167 (369)
++..-..++.+|.+|+.+++. ..++..-..+|.++ +|+.+.+..+ +. .+.. .|.. .+|+.+.+..
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp--~~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVA--STVTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEEC--TTCCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCCSEEECCT
T ss_pred ccChHHHHhhCCCCCCEEEeC--CcceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCcccccCCC
Confidence 443344567778888888886 33443334445555 4666655432 33 2222 2322 3566666654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=6.7e-05 Score=69.06 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=80.7
Q ss_pred cccCCCCCCEEEcccccCCccCCchhcCCCCCCEEEeecCCcccccchhhhCCCCCcEEeccCCcCcCCCCccccc-CCC
Q 017578 201 SVGRLRMMSRALLSRNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKLSGPIPASLMN-SGI 279 (369)
Q Consensus 201 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L 279 (369)
.+....+|+.+.+..+ +......++..+..|+.+.+..+ ++......+..+.+|+.+.+..+ +.......+.. .+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444556666665443 22234455666777777777655 44344556667777787777543 33222223333 778
Q ss_pred CEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccccchhhccCCCCCCEEEcccC
Q 017578 280 SNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSGSIPRTLSAASYIGHLDFSHN 335 (369)
Q Consensus 280 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N 335 (369)
+.+.+.++.++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888777777666677788888888888654 44344456777777777776543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=3.8e-07 Score=79.58 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=63.3
Q ss_pred CCCCCCCEEEcCCCcCcc--cCChhccCCCCCCEEEeecCcCCCcCCccccCCC--CCcEEEcccCccCCCCCC------
Q 017578 131 SSIPFLRILDLIGNKLSG--DIPRDIGRLHRLAVLNIADNNISGAIPPSIANLS--SLMHLDLRNNRISGPIPG------ 200 (369)
Q Consensus 131 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~------ 200 (369)
.++++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999996 4567778899999999999999854 3344444 999999999999876653
Q ss_pred -cccCCCCCCEEE
Q 017578 201 -SVGRLRMMSRAL 212 (369)
Q Consensus 201 -~l~~l~~L~~L~ 212 (369)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 255677777665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2.3e-06 Score=69.42 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=18.1
Q ss_pred CCCEEEeecCC-cccccchhhhCCCCCcEEeccCC
Q 017578 231 RLADLDLSMNQ-ISGMIPASLGKMAVLATLNLDFN 264 (369)
Q Consensus 231 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n 264 (369)
+|++|++++|. +++..-..+..+++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 45555555543 44444444555555555555555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=2.6e-06 Score=69.19 Aligned_cols=82 Identities=7% Similarity=-0.011 Sum_probs=47.0
Q ss_pred CCCEEEeecCCcccccchhhhCCCCCcEEeccCCc-CcCCCCccccc-----CCCCEEEcccCc-CcccCCcccCCCCCC
Q 017578 231 RLADLDLSMNQISGMIPASLGKMAVLATLNLDFNK-LSGPIPASLMN-----SGISNLNLSRNM-LEGKIPDVFGPRSYF 303 (369)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-----~~L~~L~L~~n~-l~~~~~~~~~~~~~L 303 (369)
.|+.||++++.++...-..+..+++|++|+|++|. +++..-..+.. ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56677777776665555556666777777777664 44332222221 246666666653 554444445556666
Q ss_pred CEEEeeCCc
Q 017578 304 TAIDLAYNK 312 (369)
Q Consensus 304 ~~L~L~~n~ 312 (369)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=8.2e-06 Score=67.48 Aligned_cols=111 Identities=10% Similarity=0.103 Sum_probs=71.2
Q ss_pred cCCCCCCEEEeecC-Ccccc----cchhhhCCCCCcEEeccCCcCcCCCCccccc-----CCCCEEEcccCcCccc----
Q 017578 227 SMIYRLADLDLSMN-QISGM----IPASLGKMAVLATLNLDFNKLSGPIPASLMN-----SGISNLNLSRNMLEGK---- 292 (369)
Q Consensus 227 ~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~~---- 292 (369)
..-+.|+.|+++++ .+... +.+.+..-+.|++|+|++|.+.+.....+.. +.|++|+|++|.+.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44456777777664 55432 3445556667777777777776544333332 7788888888887643
Q ss_pred CCcccCCCCCCCEEEeeCC---cccc----cchhhccCCCCCCEEEcccCcC
Q 017578 293 IPDVFGPRSYFTAIDLAYN---KLSG----SIPRTLSAASYIGHLDFSHNYL 337 (369)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n---~l~~----~~p~~l~~l~~L~~L~ls~N~l 337 (369)
+.+.+.....|++|+|++| .+.. .+...+...++|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345566677888888765 3443 2455677778888888887754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.81 E-value=1.3e-05 Score=61.93 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=34.6
Q ss_pred EEEeeCCccc-ccchhhccCCCCCCEEEcccCcCceeCCCC--CCCCCccccccccCCCcccCCC
Q 017578 305 AIDLAYNKLS-GSIPRTLSAASYIGHLDFSHNYLCGRIPDG--SPFDHLEASSFAYNKCLCGKPL 366 (369)
Q Consensus 305 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~L~~l~l~~N~~~c~~~l 366 (369)
.++.+++.++ ..+|..+ .++++.|+|++|+|+ .+|.. ..+++|+.|+|.+||+.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4555555553 2334322 134666777777766 34432 2456677778888888888865
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=2.6e-05 Score=64.46 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=42.6
Q ss_pred hhcCCCCCCEEEeecCCcccc----cchhhhCCCCCcEEeccCCcCcCCCCccccc-----CCCCEEEcccC---cCcc-
Q 017578 225 SISMIYRLADLDLSMNQISGM----IPASLGKMAVLATLNLDFNKLSGPIPASLMN-----SGISNLNLSRN---MLEG- 291 (369)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n---~l~~- 291 (369)
++..-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|+.|.|.+.....+.. ..|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 334444555555555555432 2233334455666666666555433222211 45666666543 2221
Q ss_pred ---cCCcccCCCCCCCEEEeeCCcc
Q 017578 292 ---KIPDVFGPRSYFTAIDLAYNKL 313 (369)
Q Consensus 292 ---~~~~~~~~~~~L~~L~L~~n~l 313 (369)
.+...+..-+.|+.|+++.|.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1233444456666777766554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0035 Score=48.07 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=45.5
Q ss_pred cEEeccCCcCc-CCCCcccccCCCCEEEcccCcCcccCCcccCCCCCCCEEEeeCCcccc
Q 017578 257 ATLNLDFNKLS-GPIPASLMNSGISNLNLSRNMLEGKIPDVFGPRSYFTAIDLAYNKLSG 315 (369)
Q Consensus 257 ~~L~L~~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 315 (369)
..++.+++.++ ..+|..+. .++++|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47788888876 35565443 679999999999997777778888999999999998753
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.59 E-value=29 Score=24.46 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=17.5
Q ss_pred cccCCCCCCEEecCCCCCCccccCccCCCCCCCCEEEcCC
Q 017578 104 AVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIG 143 (369)
Q Consensus 104 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L~~ 143 (369)
++.+|+.|+.+.+- ..++..-..+|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP--~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQ--PNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEEC--TTSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcC--CchheEcHHHHhccCCccEEEEcC
Confidence 44555555555554 223322233455555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.21 E-value=86 Score=21.92 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=5.7
Q ss_pred cccCCCCCcEEEc
Q 017578 177 SIANLSSLMHLDL 189 (369)
Q Consensus 177 ~l~~l~~L~~L~l 189 (369)
.|.++.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3444444444444
Done!