BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017579
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
Length = 476
Score = 507 bits (1306), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/361 (69%), Positives = 301/361 (83%), Gaps = 2/361 (0%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
NGAQKL G+II IG+++ YV++GMYG +++G G +LI +QL AG+IV+ LDELLQKG
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKG 172
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YGLGSGISLFIATNICE I+WKAFSPTT+N+GRG EFEGA+IALFHLL TR DKVRALRE
Sbjct: 173 YGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALRE 232
Query: 129 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 188
AFYRQNLPN+ NL+AT+ +F +VIYFQGFRV LP++S RGQ +YPIKLFYTSN+PII
Sbjct: 233 AFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPII 292
Query: 189 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVPVGGIAYYITAPSSLA 247
LQSALVSNLY ISQ++ R+SGN V+LLG W ++ G + PVGG+ +Y++ P S
Sbjct: 293 LQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFG 352
Query: 248 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKE 307
+ +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRE ++ E
Sbjct: 353 SVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHE 412
Query: 308 LNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 367
LNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G
Sbjct: 413 LNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSM 471
Query: 368 G 368
G
Sbjct: 472 G 472
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The
Endoplasmic Reticulum
Length = 430
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 196/359 (54%), Gaps = 45/359 (12%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G + L A L+I+Q+ F II+I LDE++ K
Sbjct: 107 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 162
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 163 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLI----------- 200
Query: 129 AFYRQNLPNV---TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM 185
Q +PN+ ++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+
Sbjct: 201 ----QGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 256
Query: 186 PIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 245
P+IL +AL +N+ +YR + +LG Y GG+ V GIAYY++ P
Sbjct: 257 PVILAAALFANIQLWGLALYR-----MGIPILG-----HYEGGR--AVDGIAYYLSTPYG 304
Query: 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQ 305
L+ + ++P HA+ Y++ M+ C +F W+E +G + +AK++ M + G R++ ++
Sbjct: 305 LSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSAIE 364
Query: 306 KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 364
L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +E +E+ SEL
Sbjct: 365 HRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSEL 423
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein
Suggests The Mechanism Of Insertion Into Membranes
Length = 482
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 207/361 (57%), Gaps = 24/361 (6%)
Query: 12 QKLLGIIIAIGEAVAYVLSGMYGSVN-QLGVGNAILIIVQLCFAGIIVICLDELLQKGYG 70
Q++ + + EA ++L G +G V + A+L+I+QL GI++I LDEL+ K +G
Sbjct: 114 QRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WG 172
Query: 71 LGSGISLFIATNICENIIWKAFSPTT----INSGRGAEFEGAVIALFHLLITRNDKVRAL 126
+GSGISLFIA + + I+ ++ +P T I+ G I F I + D L
Sbjct: 173 IGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGD----L 228
Query: 127 REAFYRQ-NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM 185
A YR + P++ +++AT+++F IV+YF+ RV +P+ + +GSYPI+ Y SN+
Sbjct: 229 WGAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNI 287
Query: 186 PIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 245
PIIL AL +N+ ++++ R G+ LG++ + S P+ G Y+ P +
Sbjct: 288 PIILTFALYANIQLWARVLDR--LGH---PWLGRFDPTTGS-----PISGFVLYVIPPRN 337
Query: 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA--N 303
+ + NP A+ YL+ + LF W+E++G AR +A+QL+ + +PG R
Sbjct: 338 IFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRT 397
Query: 304 LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
L+K L RYIP +G + + + VLADF+GA+G+GTGILL V I+Y+++E +E+ +E
Sbjct: 398 LEKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
Query: 364 L 364
+
Sbjct: 458 M 458
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel
Length = 436
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 47/361 (13%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G + L A L+I+Q+ F II+I LDE++ K
Sbjct: 108 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 163
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 164 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLI----------- 201
Query: 129 AFYRQNLPNV---TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM 185
Q +PN+ ++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+
Sbjct: 202 ----QGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 257
Query: 186 PIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 245
P+IL +AL +N+ +YR + +LG Y GG+ V GIAYY++ P
Sbjct: 258 PVILAAALFANIQLWGLALYR-----MGIPILG-----HYEGGR--AVDGIAYYLSTPYG 305
Query: 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EAN 303
L+ + ++P HA+ Y++ M+ C +F W+E +G + +AK++ M + G R E
Sbjct: 306 LSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKA 365
Query: 304 LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
++ L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +E +ER SE
Sbjct: 366 IEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSE 425
Query: 364 L 364
L
Sbjct: 426 L 426
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed
State Of The Translocation Channel And Maintains A
Membrane Seal
Length = 431
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 47/361 (13%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G + L A L+I+Q+ F II+I LDE++ K
Sbjct: 103 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 158
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 159 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLI----------- 196
Query: 129 AFYRQNLPNV---TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM 185
Q +PN+ ++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+
Sbjct: 197 ----QGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 252
Query: 186 PIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 245
P+IL +AL +N+ +YR + +LG Y GG+ V GIAYY++ P
Sbjct: 253 PVILAAALFANIQLWGLALYR-----MGIPILG-----HYEGGR--AVDGIAYYLSTPYG 300
Query: 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EAN 303
L+ + ++P HA+ Y++ M+ C +F W+E +G + +AK++ M + G R E
Sbjct: 301 LSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKA 360
Query: 304 LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
++ L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +E +E+ SE
Sbjct: 361 IEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSE 420
Query: 364 L 364
L
Sbjct: 421 L 421
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel
Length = 436
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 47/361 (13%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G + L A L+I+Q+ F II+I LDE++ K
Sbjct: 108 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 163
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 164 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLI----------- 201
Query: 129 AFYRQNLPNV---TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM 185
Q +PN+ ++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+
Sbjct: 202 ----QGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 257
Query: 186 PIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 245
P+IL +AL +N+ +YR + +LG Y GG+ V GIAYY++ P
Sbjct: 258 PVILAAALFANIQLWGLALYR-----MGIPILG-----HYEGGR--AVDGIAYYLSTPYG 305
Query: 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EAN 303
L+ + ++P HA+ Y++ M+ C +F W+E +G + +AK++ M + G R E
Sbjct: 306 LSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKA 365
Query: 304 LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
++ L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +E +E+ SE
Sbjct: 366 IEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSE 425
Query: 364 L 364
L
Sbjct: 426 L 426
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed
State Of The Translocation Channel And Maintains A
Membrane Seal
Length = 426
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 47/361 (13%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G + L A L+I+Q+ F II+I LDE++ K
Sbjct: 98 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 153
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 154 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLI----------- 191
Query: 129 AFYRQNLPNV---TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM 185
Q +PN+ ++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+
Sbjct: 192 ----QGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 247
Query: 186 PIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 245
P+IL +AL +N+ +YR + +LG Y GG+ V GIAYY++ P
Sbjct: 248 PVILAAALFANIQLWGLALYR-----MGIPILG-----HYEGGR--AVDGIAYYLSTPYG 295
Query: 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EAN 303
L+ + ++P HA+ Y++ M+ C +F W+E +G + +AK++ M + G R E
Sbjct: 296 LSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKA 355
Query: 304 LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
++ L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +E +E+ SE
Sbjct: 356 IEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSE 415
Query: 364 L 364
L
Sbjct: 416 L 416
>pdb|3BO0|A Chain A, Ribosome-Secy Complex
pdb|3BO1|A Chain A, Ribosome-Secy Complex
pdb|3KCR|A Chain A, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
Length = 442
Score = 187 bits (475), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/371 (33%), Positives = 195/371 (52%), Gaps = 57/371 (15%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G + L A L+I+Q+ F II+I LDE++ K
Sbjct: 107 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 162
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 163 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLI----------- 200
Query: 129 AFYRQNLPNV---TNLLATVLIFLIVIYFQGFR---VVLPVRSKNAR----GQQGSYPIK 178
Q +PN+ ++ T+++FL+V+Y + R VV + + R Q P+K
Sbjct: 201 ----QGVPNIEYIAPIIGTIIVFLMVVYAECMRRRIVVNYAKRQQGRRVYAAQSTHLPLK 256
Query: 179 LFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAY 238
+ Y SN+P+IL +AL +N+ +YR + +LG Y GG+ V GIAY
Sbjct: 257 VVYVSNIPVILAAALFANIQLWGLALYR-----MGIPILG-----HYEGGR--AVDGIAY 304
Query: 239 YITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPG 298
Y++ P L+ + ++P HA+ Y++ M+ C +F W+E +G + +AK++K+ +PG
Sbjct: 305 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIKKSGAFVPG 364
Query: 299 HREAN-----LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYF 353
R ++ L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +
Sbjct: 365 IRPGEQTAKYIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMY 424
Query: 354 ETFEKERASEL 364
E +E+ SEL
Sbjct: 425 EQLLREKVSEL 435
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|A Chain A, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
Length = 490
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 161/327 (49%), Gaps = 11/327 (3%)
Query: 27 YVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86
++ +G +G + L V LI QL AGI L E++ KG+G SG + I N
Sbjct: 135 FIFAGYFG--DDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATN 192
Query: 87 IIWKAFSPTTINSGRG--AEFEGAVIALFHLLITRNDK-VRALREAFYRQNLPNVTNLLA 143
++ F + I G E +GA+I L L +++ + + AF R LPN+T +
Sbjct: 193 LVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLTTTII 252
Query: 144 TVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFIS-- 201
+ I +IV Y Q RV LP+RS ARG YPIKL YT + ++ ++ ++ +
Sbjct: 253 VLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFV 312
Query: 202 --QLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFY 259
QL+ + + ++G ++ + + VP ++ S + P + Y
Sbjct: 313 LIQLVAKNEPTHIICKIMGHYENA--NNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITY 370
Query: 260 LVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFG 319
F+L F+ W +SGSSARDVA + K+Q + + G RE N+ KELN+ IP AA G
Sbjct: 371 SAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVIPIAAVTG 430
Query: 320 GMCIGALTVLADFMGAIGSGTGILLAV 346
+ +TV+ + +G G GI++ +
Sbjct: 431 ASVLSLITVIGESLGLKGKAAGIVVGI 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,301,368
Number of Sequences: 62578
Number of extensions: 402944
Number of successful extensions: 1140
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 10
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)