Query 017579
Match_columns 369
No_of_seqs 147 out of 1042
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00219 Sec61 alpha subunit; 100.0 3E-79 6.5E-84 624.6 34.6 358 7-366 114-472 (474)
2 KOG1373 Transport protein Sec6 100.0 5.2E-78 1.1E-82 580.2 33.1 362 7-369 113-474 (476)
3 PRK08568 preprotein translocas 100.0 3.1E-76 6.7E-81 601.6 33.6 340 7-364 109-452 (462)
4 COG0201 SecY Preprotein transl 100.0 6.8E-73 1.5E-77 568.7 27.7 300 7-364 113-426 (436)
5 TIGR00967 3a0501s007 preprotei 100.0 2.7E-69 5.9E-74 544.4 27.5 301 7-364 95-409 (410)
6 PRK09204 secY preprotein trans 100.0 4.5E-65 9.8E-70 515.5 28.6 290 8-363 111-420 (426)
7 PRK12907 secY preprotein trans 100.0 5E-64 1.1E-68 507.4 29.3 293 8-362 109-423 (434)
8 CHL00161 secY preprotein trans 100.0 4.1E-64 8.8E-69 507.6 28.0 290 7-362 105-409 (417)
9 PF00344 SecY: SecY translocas 100.0 3.4E-63 7.4E-68 490.7 27.8 291 7-354 38-346 (346)
10 PRK12417 secY preprotein trans 100.0 3.4E-62 7.3E-67 490.8 29.0 281 11-362 103-395 (404)
11 TIGR02920 acc_sec_Y2 accessory 100.0 8E-60 1.7E-64 473.2 30.5 283 10-362 94-388 (395)
12 PF05697 Trigger_N: Bacterial 53.2 14 0.00029 32.0 3.1 37 279-315 18-61 (145)
13 PF12263 DUF3611: Protein of u 52.7 60 0.0013 29.7 7.2 60 255-327 60-121 (183)
14 PRK15374 pathogenicity island 41.2 1.2E+02 0.0027 32.4 8.2 54 304-360 306-360 (593)
15 TIGR02876 spore_yqfD sporulati 40.7 31 0.00067 35.1 3.8 62 254-319 89-159 (382)
16 PF06898 YqfD: Putative stage 37.1 33 0.00071 34.9 3.4 62 255-319 93-163 (385)
17 PF11373 DUF3175: Protein of u 36.8 33 0.00071 27.4 2.5 37 279-315 22-61 (86)
18 PF07330 DUF1467: Protein of u 33.2 45 0.00098 26.7 2.9 39 291-329 31-70 (85)
19 COG0544 Tig FKBP-type peptidyl 29.8 33 0.00071 35.7 2.0 21 292-312 37-58 (441)
20 PRK01490 tig trigger factor; P 29.1 44 0.00095 34.2 2.8 35 280-314 19-60 (435)
21 TIGR01647 ATPase-IIIA_H plasma 29.0 2.4E+02 0.0051 31.4 8.6 80 279-362 1-83 (755)
22 TIGR00115 tig trigger factor. 27.2 47 0.001 33.6 2.6 35 280-314 7-48 (408)
23 PF01484 Col_cuticle_N: Nemato 26.1 1.2E+02 0.0025 21.2 3.8 26 342-367 17-42 (53)
24 PTZ00219 Sec61 alpha subunit; 25.5 88 0.0019 32.8 4.3 108 256-365 358-468 (474)
25 PF10905 DUF2695: Protein of u 24.7 79 0.0017 23.1 2.6 23 273-295 23-45 (53)
26 PF03613 EIID-AGA: PTS system 23.9 1.9E+02 0.0041 28.0 5.9 64 252-329 131-194 (264)
27 PF08006 DUF1700: Protein of u 23.6 1.4E+02 0.0031 26.6 4.7 30 280-310 51-81 (181)
28 COG4709 Predicted membrane pro 22.5 1.3E+02 0.0028 27.8 4.2 29 280-312 51-82 (195)
29 PF13344 Hydrolase_6: Haloacid 22.3 76 0.0017 25.6 2.5 39 272-310 34-76 (101)
30 PRK10582 cytochrome o ubiquino 20.0 4.6E+02 0.0099 21.9 6.7 47 14-60 48-100 (109)
No 1
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=3e-79 Score=624.60 Aligned_cols=358 Identities=74% Similarity=1.243 Sum_probs=317.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
++|++|||+|+++|++||++++..+.++...+.++...+++++||++|++++|||||++|||||+|||+||+|++|||++
T Consensus 114 k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~ 193 (474)
T PTZ00219 114 LFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGSGISLFIATNICET 193 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHH
Confidence 46899999999999999999986543343333344467788999999999999999999999999999999999999999
Q ss_pred HhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeec
Q 017579 87 IIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSK 166 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~ 166 (369)
+||+.+++.+.+.+++.|++|.++++++.+.+++++..+++++++|.++|+++.++++++++.+++|+|++|||||++|+
T Consensus 194 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~ 273 (474)
T PTZ00219 194 IIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQ 273 (474)
T ss_pred hHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhcccccHHHHHHHHHHHHhheeeeeeEEEEeeecc
Confidence 99999998766655555789998888775556778889999999999988988888999999999999999999999999
Q ss_pred cCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccccCCccc
Q 017579 167 NARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSL 246 (369)
Q Consensus 167 k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s~~~~~ 246 (369)
|++|+++++|+|+||+||||+|||||++++|+++++++++.++++..++++++|.+.+. .+++.|++|+++|++||+++
T Consensus 274 ~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~gl~~~l~~p~~~ 352 (474)
T PTZ00219 274 KVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLINLLGQWQEVEY-SGQSVPVGGLAYYLSPPNSF 352 (474)
T ss_pred cccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccceecccc-ccccccchhHHhhcCCCcch
Confidence 99999999999999999999999999999999999998765555444455667753100 13457999999999999888
Q ss_pred chhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhHHHHHHHH
Q 017579 247 ADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGA 325 (369)
Q Consensus 247 ~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~Ga~~l~~ 325 (369)
.+.+.+|+|.++|.++++++|++|+++|.++|++||||+||||||||++|||+||| +|+|||+|+++|+|++||+|+++
T Consensus 353 ~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ 432 (474)
T PTZ00219 353 SDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGA 432 (474)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhccC
Q 017579 326 LTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF 366 (369)
Q Consensus 326 ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~~ 366 (369)
+|++|++++..+||||+||+|||+++++|+++|||.+ -|+
T Consensus 433 ia~lp~~~~~~~gGTslLI~VgV~~~~~e~~~~e~~~-~~~ 472 (474)
T PTZ00219 433 LTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQ-YGF 472 (474)
T ss_pred HHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHhh-ccC
Confidence 9999999987889999999999999999999999877 443
No 2
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-78 Score=580.20 Aligned_cols=362 Identities=77% Similarity=1.231 Sum_probs=350.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
.||..||.+++++++.||..++++|+||++++.+...++++++||+..+.+++.|||+++||||+|||+||||++|||++
T Consensus 113 Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~Agiiv~lLdEllqKGyGlgSGislfiatnice~ 192 (476)
T KOG1373|consen 113 LFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFAGIIVILLDELLQKGYGLGSGISLFIATNICES 192 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHhhHHHHHHHHHHHhccCcCcchhhhhHHHHHHH
Confidence 37999999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeec
Q 017579 87 IIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSK 166 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~ 166 (369)
+.|+.|+|.+.++++|.|++|++++++|.+.+++||.+++++||+|.++||+..++++++++.+|+|+|..|+++|++++
T Consensus 193 ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~RqnLPNl~nl~at~lif~iViYlQgfRVeLPirS~ 272 (476)
T KOG1373|consen 193 IVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQNLPNLTNLLATVLIFLIVIYLQGFRVELPIRST 272 (476)
T ss_pred HHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhccceEEEeeecch
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccccCCccc
Q 017579 167 NARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSL 246 (369)
Q Consensus 167 k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s~~~~~ 246 (369)
|.||+++.||||++|++.||+|+.|++.++...++|++++++|.|..++++|.|++.++ ++++.|++|+.||++||.++
T Consensus 273 r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v~llG~w~~~~~-~~~~~p~~glsyy~~pp~s~ 351 (476)
T KOG1373|consen 273 RARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLVRLLGVWEDSEG-GGRSMPVSGLSYYITPPESF 351 (476)
T ss_pred hhcccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEeeeecCCC-CcccccccceeEecCChHHH
Confidence 99999999999999999999999999999999999999999999999999999987653 25789999999999999999
Q ss_pred chhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhhhhhhhHHHHHHHHH
Q 017579 247 ADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGAL 326 (369)
Q Consensus 247 ~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg~T~~yL~kvi~r~t~~Ga~~l~~i 326 (369)
.+.+.||+|.++|..++...|.+||.-|.++|+.+|||+|||||||+..++|+|+..+.|+|+||||.++++||.+++.+
T Consensus 352 ~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~G~RE~n~~~eLnr~IPtAA~~Gg~~igal 431 (476)
T KOG1373|consen 352 GEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMRGHRETNMAKELNRYIPTAAAFGGLCIGAL 431 (476)
T ss_pred HHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccceecCcchhhHHHHHHhhccHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhccCCCC
Q 017579 327 TVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 369 (369)
Q Consensus 327 a~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~~~~~ 369 (369)
++++|++|+.|+|||++++|+++++++|+++||+.+|-|..++
T Consensus 432 tV~~d~lgaiGsgtgIllavt~iyqy~E~~~kE~~~~~g~~~~ 474 (476)
T KOG1373|consen 432 TVLADLLGAIGSGTGILLAVTIIYQYFEIFAKEQAQEGGFSAL 474 (476)
T ss_pred HHHHHHhhcccCCceEEeehHHHHHHHHHHHHHHhhcCCcccC
Confidence 9999999999999999999999999999999999999988764
No 3
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.1e-76 Score=601.61 Aligned_cols=340 Identities=38% Similarity=0.690 Sum_probs=298.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCcc--ccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVN--QLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNIC 84 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~--~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~ 84 (369)
+||++||++|+++|++||.+++.++.+++.. ..++...+++++||++|++++|||||+||| ||+|||+|++|++|||
T Consensus 109 k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt~i~~wL~E~Itk-~GiGnGiSliI~~gI~ 187 (462)
T PRK08568 109 LFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSK-WGIGSGISLFILAGVS 187 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCcchHHHHHHHHH
Confidence 5799999999999999999999875432211 123446788899999999999999999999 9999999999999999
Q ss_pred HHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeee
Q 017579 85 ENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVR 164 (369)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~ 164 (369)
+++||++++..+ ++++|++|.++++.+...+++.+...+ +|.++|++..++++++++++++|+|++|||||+|
T Consensus 188 ~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~----~r~~l~~l~~~~~~~~i~~~~v~~q~~~~~IPI~ 260 (462)
T PRK08568 188 QTIFVGLFNWLT---GGQGLPVGFIPALFSAITSGNLTLALL----LTTRGLLLLGLITTIVIFLIVVYLESMRVEIPLS 260 (462)
T ss_pred HHHHHHHhhhhc---ccCccccchHHHHHHHHhcCccchhhh----hcccccHHHHHHHHHHHHHHheeEEeeEEEEEEE
Confidence 999999998754 444588999988876444443333333 7888999999999999999999999999999999
Q ss_pred eccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccccCCc
Q 017579 165 SKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 244 (369)
Q Consensus 165 ~~k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s~~~ 244 (369)
|+|.+|+++|+|+|+||+|+||+|||||++++|+++++++.+.. .+++++|++. + ..|++++++|++||+
T Consensus 261 ~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~-----~~~~~~~~~~----~-~~~~~~l~~~~~~p~ 330 (462)
T PRK08568 261 HGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLG-----IPILGTYDSS----G-ASPISGLAYYLSPPH 330 (462)
T ss_pred eccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcC-----chhhhhcccc----c-ccchhHHHHHhCCCc
Confidence 99988999999999999999999999999999999999874321 2355666542 2 237889999999998
Q ss_pred ccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-h-HHHHHHhhhhhhhhHHHHH
Q 017579 245 SLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-N-LQKELNRYIPTAAAFGGMC 322 (369)
Q Consensus 245 ~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~-T~~yL~kvi~r~t~~Ga~~ 322 (369)
+..+++.+|+|.++|.++++++|++|||||++++++||||+||||||||++|||+||| + |+|||+|+++|+|++||++
T Consensus 331 ~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~ 410 (462)
T PRK08568 331 SPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAI 410 (462)
T ss_pred chhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 8778888999999999999999999999999997799999999999999999999999 6 9999999999999999999
Q ss_pred HHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 323 IGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 323 l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
++++|++|++++..|+|||+||+||+++|++||+++|+.+|+
T Consensus 411 l~~ia~lp~~~~~~g~gtslLI~Vgv~~~~~~qi~~~~~~~~ 452 (462)
T PRK08568 411 VGLLAVLADLLGALGGGTGLLLTVSIVYQLYEEIAREQLMEM 452 (462)
T ss_pred HHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999889999999999999999999999998775
No 4
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.8e-73 Score=568.70 Aligned_cols=300 Identities=28% Similarity=0.457 Sum_probs=246.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccC---C-ccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYG---S-VNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATN 82 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~---~-~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~ag 82 (369)
++|++|||+|+++|++||++++..+.+. + ..+.++.+++++++||++||+++|||||+||| ||||||+||+|++|
T Consensus 113 k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~Gt~~lmwLgE~Itk-~GIGnGiSLiIfag 191 (436)
T COG0201 113 KIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITK-RGIGNGISLIIFAG 191 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccchHHHHHHH
Confidence 4678899999999999999999876421 1 11223568889999999999999999999999 99999999999999
Q ss_pred HHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEe
Q 017579 83 ICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLP 162 (369)
Q Consensus 83 I~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IP 162 (369)
|++++|+++++..... +.|.. ..+. +.+++.++.++++++++||+|++|||||
T Consensus 192 I~~~lp~~~~~~~~~~------~~~~~--~~~~-------------------l~~l~~~~~~l~ii~~vvyve~~~r~IP 244 (436)
T COG0201 192 IVASLPSAIFGIIGAL------PTGAL--FLSI-------------------LFLLLLVLLTLAIIFLVVYVEQARRRIP 244 (436)
T ss_pred HHHHhHHHHHHHHHHH------hcchh--HHHH-------------------HHHHHHHHHHHHHHHHHHHhhheEEEee
Confidence 9999999999853210 01100 0000 0125677888888999999999999999
Q ss_pred eeecc---CCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccccccccc
Q 017579 163 VRSKN---ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYY 239 (369)
Q Consensus 163 v~~~k---~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~ 239 (369)
+||+| .+|+++|+|+|+|||||||+|||||++++|.++++++.+. +. ..|. .+...+..+
T Consensus 245 I~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~--~~------~~~~---------~~~~~i~~~ 307 (436)
T COG0201 245 IQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNG--GL------AYYL---------SPLTSISDA 307 (436)
T ss_pred hhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCC--Cc------cccc---------cchhhHHHh
Confidence 99999 8899999999999999999999999999999999987521 00 0010 011223334
Q ss_pred ccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhH
Q 017579 240 ITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAF 318 (369)
Q Consensus 240 ~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~ 318 (369)
++| ++| +|.++++++|++|||||+++ ++||||+||||||+|.+|||+||| +|+|||+|+++|+|++
T Consensus 308 l~~--------~~~----~y~~~y~~lii~Fs~Fy~~i-~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~ 374 (436)
T COG0201 308 LSP--------GSP----VYIALYVVLIIFFSYFYTEI-QFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFI 374 (436)
T ss_pred ccC--------CcH----HHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHH
Confidence 432 234 55555566799999999999 999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhHHHhcccC------cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 319 GGMCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 319 Ga~~l~~ia~lp~~~g~~g------gGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
||+|++++|++|++++..+ ||||+||+|+|++|++||+++|+.+|+
T Consensus 375 Ga~~l~~iailp~l~~~~~~~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~ 426 (436)
T COG0201 375 GALFLGLIAILPELLGTAGGVPFYFGGTSLLIVVGVALDTYEQIEAELLMEK 426 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCeeeeeehHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999777 999999999999999999999998875
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=2.7e-69 Score=544.38 Aligned_cols=301 Identities=34% Similarity=0.574 Sum_probs=247.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
++|++||++|+++|++||.++++.+.++...+.++..++++++||++|++++|||||+||| ||+|||+|++|++||+++
T Consensus 95 k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~-~GiGnG~SliI~~gI~~~ 173 (410)
T TIGR00967 95 KINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK-YGIGNGISLLIFAGIIAT 173 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccCcHHHHHHHHHHH
Confidence 4688999999999999999998433332222223446778899999999999999999999 999999999999999999
Q ss_pred HhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeec
Q 017579 87 IIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSK 166 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~ 166 (369)
+||+++++.+... ++...+..+|+| +|++..++++++++++++|+|++|||||+||+
T Consensus 174 ~~~~~~~~~~~~~---------------------~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~ 230 (410)
T TIGR00967 174 IPSGLLQPTEVRQ---------------------SKVRDLISFLQN--LPFLLYLIATIIVFAVVVFVQQARRKIPIQSA 230 (410)
T ss_pred HHHHHHHHHHHhh---------------------hhccchhhHHHH--HHHHHHHHHHHHHHHHHheeeeeEEEEEEEEh
Confidence 9999987643100 001112233444 36677888889999999999999999999999
Q ss_pred cCCC-----CCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccccccccccc
Q 017579 167 NARG-----QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYIT 241 (369)
Q Consensus 167 k~~g-----~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s 241 (369)
|+++ +++|+|+|+||+|+||+|||||++++|+++++++.+.++. .| +.+
T Consensus 231 ~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~--------~~------------------~~~ 284 (410)
T TIGR00967 231 KRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGG--------AW------------------FLN 284 (410)
T ss_pred hhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcch--------hH------------------HHH
Confidence 8665 7899999999999999999999999999999986432110 11 112
Q ss_pred CCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhHHH
Q 017579 242 APSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGG 320 (369)
Q Consensus 242 ~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~Ga 320 (369)
+|+++ ..++|+|.++| +++|++|+|||+++ ++||||+||||||||++|||+||| +|+|||+|+++|+|++||
T Consensus 285 ~~~~~--~~~~p~~~~~y----~~lii~Fs~f~~~~-~~~p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Ga 357 (410)
T TIGR00967 285 PILSL--SLSDPIGAILY----LILIIFFSFFYVEL-QLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGS 357 (410)
T ss_pred HHHhc--CCcccHHHHHH----HHHHHHHHHHHHHH-ccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHH
Confidence 22221 13478787777 44789999999997 999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHhHHHhcccC--------cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 321 MCIGALTVLADFMGAIG--------SGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 321 ~~l~~ia~lp~~~g~~g--------gGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
++++++|++|++++..+ ||||+||+||+++|++||+++|+.+|+
T Consensus 358 i~l~~ia~~p~l~~~~~~~~~~~~~ggtsiLI~Vgv~~~~~~qi~~~~~~~~ 409 (410)
T TIGR00967 358 LFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDTYKQLESYLISRN 409 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCchHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999997554 499999999999999999999998875
No 6
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=4.5e-65 Score=515.52 Aligned_cols=290 Identities=19% Similarity=0.345 Sum_probs=235.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--ccC---Cc-cccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHH
Q 017579 8 RNGAQKLLGIIIAIGEAVAYVLSG--MYG---SV-NQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIAT 81 (369)
Q Consensus 8 f~~~qk~lti~la~iqa~~~v~~g--~~~---~~-~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~a 81 (369)
+|++|||+|+++|++||+++++.. ..+ .. ...++...++++++|++||+++|||||+||| ||+|||+||+|++
T Consensus 111 ~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs~i~~wL~e~It~-~GiGnGiSliI~~ 189 (426)
T PRK09204 111 INQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITE-RGIGNGISLIIFA 189 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcccchHHHHHH
Confidence 577888999999999999988542 221 11 1113446778899999999999999999999 9999999999999
Q ss_pred HHHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEE
Q 017579 82 NICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVL 161 (369)
Q Consensus 82 gI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~I 161 (369)
||++++|+++.+..+.... |.. +.. ..+..+++++++++++||+|++||||
T Consensus 190 gI~~~ip~~~~~~~~~~~~------~~~-~~~----------------------~~~~~~~~~~~~~~~~v~~~~~~~rI 240 (426)
T PRK09204 190 GIVAGLPSAIGQTFELART------GSL-SIL----------------------VFLLLIVLFLAVIAFVVFVEQAQRRI 240 (426)
T ss_pred HHHHHHHHHHHHHHHHhcc------Ccc-hHH----------------------HHHHHHHHHHHHHHHHheeeeeEEEE
Confidence 9999999988765321100 000 000 01344666778889999999999999
Q ss_pred eeeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccc
Q 017579 162 PVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVG 234 (369)
Q Consensus 162 Pv~~~k~-------~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 234 (369)
|+||+|+ +++++|+|+|+||+||||+|||+|++++|++++++. +++ .|. +
T Consensus 241 Pi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~----~~~-------~~~------------~ 297 (426)
T PRK09204 241 PVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFF----GSG-------SWL------------Q 297 (426)
T ss_pred EEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhc----Cch-------HHH------------H
Confidence 9999984 457899999999999999999999999999998871 221 122 1
Q ss_pred cccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhh
Q 017579 235 GIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 235 gi~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
.+.+|++| ++|+|.++|.+ ++++|+|||+++ ++||||+||||||||++|||+||| +|+|||+|+++
T Consensus 298 ~~~~~~~~--------~~~~~~~~y~~----lii~Fs~fy~~i-~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~ 364 (426)
T PRK09204 298 WIANYLSP--------GSPLYILLYAL----LIIFFTFFYTAI-QFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLT 364 (426)
T ss_pred HHHHHhCC--------CChHHHHHHHH----HHHHHHHHHHHH-hcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHH
Confidence 24667765 25666666654 577899999999 699999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHHHHHhHHHhcccC------cccchhHHHHHHHHHHHHHHHHhhhh
Q 017579 314 TAAAFGGMCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFETFEKERASE 363 (369)
Q Consensus 314 r~t~~Ga~~l~~ia~lp~~~g~~g------gGtslLI~Vgv~~~~~~qi~~e~~~e 363 (369)
|+|++||++++++|++|++++..+ ||||+||+|||++|++||++....++
T Consensus 365 r~t~~Ga~~l~~ia~~p~~~~~~~~~~~~~ggTslLI~Vgv~l~~~~qi~~~~~~~ 420 (426)
T PRK09204 365 RLTLVGAIYLAFIALLPEILQNALGVPFYFGGTSLLIVVGVALDTMKQIESQLMSR 420 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988665 89999999999999999998866443
No 7
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=5e-64 Score=507.42 Aligned_cols=293 Identities=20% Similarity=0.284 Sum_probs=225.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc---CC-ccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHH
Q 017579 8 RNGAQKLLGIIIAIGEAVAYVLSGMY---GS-VNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 83 (369)
Q Consensus 8 f~~~qk~lti~la~iqa~~~v~~g~~---~~-~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI 83 (369)
+|++|||+|+++|++||+++++.... +. ..+.++...++++++|++||+++|||||+||| ||+|||+|++|++||
T Consensus 109 ~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~WL~e~It~-~GIGnGiSliI~~gI 187 (434)
T PRK12907 109 SAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITA-NGVGNGISMLIFAGL 187 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCcccHHHHHHHH
Confidence 34677899999999999998764211 10 11223445677789999999999999999999 999999999999999
Q ss_pred HHHHhHhhhcccee-cCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEe
Q 017579 84 CENIIWKAFSPTTI-NSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLP 162 (369)
Q Consensus 84 ~~~l~~~~~~~~~~-~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IP 162 (369)
++++|..+.+.... ....+ + ....... ..++.++..+++++++||+|++|||||
T Consensus 188 v~~~p~~~~~~~~~~~~~~~-~--~~~~~~~----------------------~~~~~~~~~~~~i~~~v~v~~~~rrIP 242 (434)
T PRK12907 188 VAAIPNVANQIYLQQFQNAG-D--QLFMHII----------------------KMLLIGLVILAIVVGVIYIQQAVRKIP 242 (434)
T ss_pred HHHHHHHHHHHHHHHhhccC-c--hhhhhHH----------------------HHHHHHHHHHHHHHHHhheeeeeEEEE
Confidence 99999766442110 00000 0 0000000 012233444567788999999999999
Q ss_pred eeeccC-------CC-CCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccc
Q 017579 163 VRSKNA-------RG-QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVG 234 (369)
Q Consensus 163 v~~~k~-------~g-~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 234 (369)
+||+|+ +| +++|+|+|+|+|||||+|||||++++|+++++++.+. .+. .
T Consensus 243 i~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~-----------~~~------------~ 299 (434)
T PRK12907 243 IQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDS-----------SVS------------K 299 (434)
T ss_pred EEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCC-----------hHH------------H
Confidence 999952 23 5689999999999999999999999999999875221 000 0
Q ss_pred cccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhh
Q 017579 235 GIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 235 gi~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
.+..+++| ++|++.++| ++++++|+|||+.+ ++||||+||||||+|++|||+||| +|+|||+|+++
T Consensus 300 ~~~~~~~~--------~~~~~~~~y----~~lii~Fs~fyt~i-~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~ 366 (434)
T PRK12907 300 WLVANLDF--------AHPIGMTLY----VGLIVAFTYFYAFI-QVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILY 366 (434)
T ss_pred HHHHHcCC--------CCcHHHHHH----HHHHHHHHHHHHHH-ccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHH
Confidence 12233443 245555555 44689999999999 999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHHHHHhHHHhccc--------CcccchhHHHHHHHHHHHHHHHHhhh
Q 017579 314 TAAAFGGMCIGALTVLADFMGAI--------GSGTGILLAVTIIYQYFETFEKERAS 362 (369)
Q Consensus 314 r~t~~Ga~~l~~ia~lp~~~g~~--------ggGtslLI~Vgv~~~~~~qi~~e~~~ 362 (369)
|+|++||++++++|++|++++.. .||||+||+|||++|++||++....+
T Consensus 367 rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~ 423 (434)
T PRK12907 367 RLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQLVK 423 (434)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987532 48999999999999999999886644
No 8
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=4.1e-64 Score=507.57 Aligned_cols=290 Identities=20% Similarity=0.275 Sum_probs=233.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
++|++|||+|+++|++||.+++++... .....+....+++++||++|++++|||||+||| ||+|||+|++|++||+++
T Consensus 105 k~~~~tr~ltl~la~iqa~~~~~~~~~-~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~it~-~GiGnGiSliI~~~I~~~ 182 (417)
T CHL00161 105 KINQYTRYLTLGWAIIQSIGISFWLKP-YLFNWNLLLALEIVLALTSGSMIVLWLSELITE-KGLGNGSSLLIFFNIVSN 182 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCcchHHHHHHHHHHH
Confidence 478899999999999999999875321 111112235778899999999999999999999 999999999999999999
Q ss_pred HhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeec
Q 017579 87 IIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSK 166 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~ 166 (369)
+|..+.+......+ . .+.+ ..+..++++++++++++++|++|||||+||+
T Consensus 183 ~p~~~~~~~~~~~~---~-~~~~--------------------------~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~ 232 (417)
T CHL00161 183 LPKLLQSLLFSLSA---N-ITIL--------------------------SILLLLFLFFITLIGIIFLQEAIRKIPLISA 232 (417)
T ss_pred HHHHHHHHHHHhcc---c-hhHH--------------------------HHHHHHHHHHHHHHHHHHhhcceEEEEEEEh
Confidence 99776433210000 0 0000 0133455667788899999999999999999
Q ss_pred cCCC------CCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccc
Q 017579 167 NARG------QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYI 240 (369)
Q Consensus 167 k~~g------~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~ 240 (369)
|+++ +++|+|+|+||+|+||+|||||++++|+++++++++.+. .++ .....++
T Consensus 233 ~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~--------~~~-------------~~~~~~~ 291 (417)
T CHL00161 233 KQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFL--------LPL-------------LSLFLQL 291 (417)
T ss_pred hhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccch--------hhH-------------HHHHhcC
Confidence 8664 789999999999999999999999999999998743211 111 0112223
Q ss_pred cCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhHH
Q 017579 241 TAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFG 319 (369)
Q Consensus 241 s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~G 319 (369)
+ .+..+|.++++++|++|+|||+++ ++||||+||||||||++|||+||| +|+|||+|+++|+|++|
T Consensus 292 ~------------~~~~~y~~~y~~lii~Fs~f~~~i-~~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~G 358 (417)
T CHL00161 292 A------------SFKILYLVLYFVLILFFSYFYSTI-VLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLG 358 (417)
T ss_pred C------------cccHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHh
Confidence 2 233557777777899999999999 699999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhHHHhccc-------C-cccchhHHHHHHHHHHHHHHHHhhh
Q 017579 320 GMCIGALTVLADFMGAI-------G-SGTGILLAVTIIYQYFETFEKERAS 362 (369)
Q Consensus 320 a~~l~~ia~lp~~~g~~-------g-gGtslLI~Vgv~~~~~~qi~~e~~~ 362 (369)
|++++++|++|++++.. + ||||+||+|||++|++||++....+
T Consensus 359 a~~l~~la~~p~l~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~qi~a~~~~ 409 (417)
T CHL00161 359 ALFLAFIALLPNLIESVLNLSVFKGLGTTSLLILVGVAIDTSRQIQTYLIS 409 (417)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999988643 4 7999999999999999999887644
No 9
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=3.4e-63 Score=490.74 Aligned_cols=291 Identities=33% Similarity=0.554 Sum_probs=243.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHh-ccCCcc------ccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSG-MYGSVN------QLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFI 79 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g-~~~~~~------~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI 79 (369)
+++++||++|+++|++||++++... .++... ..++...+++++||++|+++++||||+||| ||+|||+|++|
T Consensus 38 ~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~G~~i~~wL~e~it~-~GiGnG~SliI 116 (346)
T PF00344_consen 38 KLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSGFINYLLIVLQLVAGSMILIWLSELITK-YGIGNGISLII 116 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccchHHHH
Confidence 4688999999999999999999653 232211 123445689999999999999999999999 99999999999
Q ss_pred HHHHHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEE
Q 017579 80 ATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRV 159 (369)
Q Consensus 80 ~agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r 159 (369)
++|||+++|+++.+..+....+.....+.+ ..+..+++++++++++||+|++||
T Consensus 117 ~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~~l~~~~~~v~l~~~~~ 170 (346)
T PF00344_consen 117 FAGIISNLPWSIINLFQLLSNKAGSLSNAL--------------------------FLLIILIITLVVIALVVYLQEAER 170 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSTSSSTH--------------------------HHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHH--------------------------HHHHHHHHHHHHHHhheeeeeeEE
Confidence 999999999997655321110000111111 115567778888899999999999
Q ss_pred EEeeeeccC----CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccccc
Q 017579 160 VLPVRSKNA----RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGG 235 (369)
Q Consensus 160 ~IPv~~~k~----~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~g 235 (369)
|||++|+|. +++++|+|+|+||+|+||+||+++++++|+++++++.+.+++ + .+.++
T Consensus 171 rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~--------~-----------~~~~~ 231 (346)
T PF00344_consen 171 RIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPN--------N-----------WLVSG 231 (346)
T ss_dssp EECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCC--------S-----------CCSSC
T ss_pred EEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCcc--------c-----------cHHHH
Confidence 999999999 888999999999999999999999999999999988654332 1 12345
Q ss_pred ccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhh
Q 017579 236 IAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPT 314 (369)
Q Consensus 236 i~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r 314 (369)
+.+|++ ++.+..+|..++++++++|||+|+.+ ++||||+||||||||++|||+||| +|+|||+|+++|
T Consensus 232 i~~~~~----------~~~~~~~y~~~~~~li~~Fs~~~~~~-~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~ 300 (346)
T PF00344_consen 232 IAYYFS----------QNLNSPLYIIFYLILIILFSYFFSFI-NINPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPR 300 (346)
T ss_dssp CHHHTS----------SSHHHHHHHHHHHHHHHHHHHHHHTS-SSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHH
T ss_pred HHHHhc----------cCcchHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHH
Confidence 666763 45677788888888999999999966 999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHhcccC------cccchhHHHHHHHHHHH
Q 017579 315 AAAFGGMCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFE 354 (369)
Q Consensus 315 ~t~~Ga~~l~~ia~lp~~~g~~g------gGtslLI~Vgv~~~~~~ 354 (369)
++++||++++++|++|++++..+ +|||++|+||+++|++|
T Consensus 301 ~~~~G~~~l~~ia~~p~~~~~~~~~~~~~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 301 LSFLGALFLALIAVLPLIFGLFGGSSLFFGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCSCCCTHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999888 99999999999999987
No 10
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.4e-62 Score=490.81 Aligned_cols=281 Identities=16% Similarity=0.227 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHHHhHh
Q 017579 11 AQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWK 90 (369)
Q Consensus 11 ~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~l~~~ 90 (369)
.|||+|+++|++||+++++++.+... ....++++++++|++|++++|||||+||| ||+| |+|++|++|||+++|++
T Consensus 103 ~~r~ltl~la~iQs~~~~~~~~~~~~--~~~~~~~~~~l~L~aGt~~~~WL~E~it~-~GIG-G~SliI~~~Iv~~~p~~ 178 (404)
T PRK12417 103 RERILTLIIAVIQSLAVILSLPSKER--ISQTNILLNTLILVTGTMFLVWLSDLNAR-YGIG-GPMPIVLVSMIKSIPQD 178 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-HHHHHHHHHHHHHHHHH
Confidence 46899999999999999876532211 11126778999999999999999999999 9999 99999999999999999
Q ss_pred hhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeeccCC-
Q 017579 91 AFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNAR- 169 (369)
Q Consensus 91 ~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~k~~- 169 (369)
+.+..+. . +.. ....+...++++++++++|++|||||+||+|+.
T Consensus 179 ~~~~~~~----------~-~~~------------------------~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~~ 223 (404)
T PRK12417 179 VIEYIDA----------S-HIV------------------------IILLILLVIITLFFLYFIELVEYRIPYNDIMNHN 223 (404)
T ss_pred HHHHHHH----------H-HHH------------------------HHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhhc
Confidence 8765310 0 000 012233334455678999999999999998742
Q ss_pred --CCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccccCCcccc
Q 017579 170 --GQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLA 247 (369)
Q Consensus 170 --g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s~~~~~~ 247 (369)
.+++|+|+|+|+|||||+|||||++++|+++++++++.++++. |.+ ....++++
T Consensus 224 ~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~-------~~~------------~~~~~~~~----- 279 (404)
T PRK12417 224 RFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNS-------GIS------------ADMDMLSF----- 279 (404)
T ss_pred cCCCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcH-------HHH------------HHHHHcCC-----
Confidence 2678999999999999999999999999999998765544321 111 11222332
Q ss_pred hhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhHHHHHHHHH
Q 017579 248 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGAL 326 (369)
Q Consensus 248 ~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~Ga~~l~~i 326 (369)
++|.|.++|.++ .++|+|||+.+ ++||||+||||||||++|||+||| +|+|||+|+++|+|++||+|++++
T Consensus 280 ---~~~~~~~~y~~l----ii~fs~fys~i-~~nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~i 351 (404)
T PRK12417 280 ---GSPLGVTVYLIL----QFLLSYFFSFV-NINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVI 351 (404)
T ss_pred ---CCcHHHHHHHHH----HHHHHHHHHHH-hcCHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777664 67788888888 999999999999999999999999 999999999999999999999999
Q ss_pred HHhHHHhccc--------CcccchhHHHHHHHHHHHHHHHHhhh
Q 017579 327 TVLADFMGAI--------GSGTGILLAVTIIYQYFETFEKERAS 362 (369)
Q Consensus 327 a~lp~~~g~~--------ggGtslLI~Vgv~~~~~~qi~~e~~~ 362 (369)
|++|.++... -||||+||+|||++|++||++....+
T Consensus 352 a~lP~~~~~~~~~~~~~~~ggtsllI~Vgv~ldt~~qi~s~l~~ 395 (404)
T PRK12417 352 AGIPLYFTLFDPHLSTEIYFSGQFMMFVGMSFNIADEIRALLYF 395 (404)
T ss_pred HHHHHHHHhcCCccccceeccchheehhhhHHHHHHHHHHHHHH
Confidence 9999987421 28999999999999999999876643
No 11
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=8e-60 Score=473.16 Aligned_cols=283 Identities=18% Similarity=0.268 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHHHhH
Q 017579 10 GAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIW 89 (369)
Q Consensus 10 ~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~l~~ 89 (369)
+.|||+|+++|++||.++++++.+... ..++ ..+++++||++|++++|||||++|| ||+| |+|++|++||++++|+
T Consensus 94 ~~tr~ltl~~a~iQs~~~~~~~~~~~~-~~~~-~~~~~vl~L~~Gt~iv~wL~E~it~-~GiG-G~sllI~~~I~s~~~~ 169 (395)
T TIGR02920 94 YRERFLTLIIAIIQGLAIIHSFTNKNG-LSDF-NMLLATLILVTGTCLLVWLADLNAK-YGIG-GSMPIVLVSMLKNIPS 169 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-cchh-HHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-hHHHHHHHHHHHHHHH
Confidence 357999999999999999876432111 1123 4677899999999999999999999 9999 9999999999999999
Q ss_pred hhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeeccC-
Q 017579 90 KAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA- 168 (369)
Q Consensus 90 ~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~k~- 168 (369)
++++..+.+ .+.. ..+..+.+++++++++++|++|||||++|+|+
T Consensus 170 ~~~~~~~~~-------~~~~---------------------------~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~ 215 (395)
T TIGR02920 170 NVFELFQMS-------YIWL---------------------------IALLILLTLVALFLLAFIERAEYRIPVNDISLH 215 (395)
T ss_pred HHHHHHhcc-------hHHH---------------------------HHHHHHHHHHHHHHHHheecceEEEEEEEchhh
Confidence 987653210 0111 02233445556667899999999999999873
Q ss_pred -C-CCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccccCCccc
Q 017579 169 -R-GQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSL 246 (369)
Q Consensus 169 -~-g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s~~~~~ 246 (369)
| ++++|+|+|+||+||||+|||||++++|+++++.+.+.++++.. +++|. .+++
T Consensus 216 ~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~---~~~~~----------------~~~~----- 271 (395)
T TIGR02920 216 NRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSL---INNWV----------------FQFS----- 271 (395)
T ss_pred ccCCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCch---HHHHh----------------hccC-----
Confidence 3 36788999999999999999999999998887666544333210 11121 1121
Q ss_pred chhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhHHHHHHHH
Q 017579 247 ADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGA 325 (369)
Q Consensus 247 ~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~Ga~~l~~ 325 (369)
.++|+|.++|.+++ ++|+|||+.+ ++||||+||||||||++|||+||| +|+|||+|+++|+|++||+++++
T Consensus 272 ---~~~~~~~i~y~~li----i~fs~fys~i-~~nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ 343 (395)
T TIGR02920 272 ---FSSPVGILIYLILQ----MLLSYFFTFV-NINPKEISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAF 343 (395)
T ss_pred ---CcchHHHHHHHHHH----HHHHHHHHHh-eECHHHHHHHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 24687888887765 5666777777 999999999999999999999999 99999999999999999999999
Q ss_pred HHHhHHHhc-c---c----CcccchhHHHHHHHHHHHHHHHHhhh
Q 017579 326 LTVLADFMG-A---I----GSGTGILLAVTIIYQYFETFEKERAS 362 (369)
Q Consensus 326 ia~lp~~~g-~---~----ggGtslLI~Vgv~~~~~~qi~~e~~~ 362 (369)
+|++|.++. . . .||||++|+|||++|++||++....+
T Consensus 344 ia~lP~~~~~~~~~~~~~~~ggtsllI~vgv~ldt~~qi~~~~~~ 388 (395)
T TIGR02920 344 QLGIPLYFALFVPHLLTEAYIPGQFMMITGMSFNIADEIRTILYF 388 (395)
T ss_pred HHHHHHHHHHHhccccceeehhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 999999874 2 2 28999999999999999999887644
No 12
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=53.20 E-value=14 Score=31.96 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhhhh
Q 017579 279 GSSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIPTA 315 (369)
Q Consensus 279 ~~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~r~ 315 (369)
.++++++.+.++ +....|||+||| .-.+-+++....-
T Consensus 18 ~v~~~~~~~~~~~~l~~~~k~~~ipGFRkGK~P~~vi~~~~g~~ 61 (145)
T PF05697_consen 18 EVPAEEVEKAYEKALKELAKKVKIPGFRKGKAPRNVIEKRYGKE 61 (145)
T ss_dssp EE-HHHHHHHHHHHHHHHHTTTTBTTS-TTSS-HHHHHHHHCHH
T ss_pred EECHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHH
Confidence 345565555553 356789999999 6667777666554
No 13
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=52.67 E-value=60 Score=29.73 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc--hHHHHHHhhhhhhhhHHHHHHHHHH
Q 017579 255 HALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA--NLQKELNRYIPTAAAFGGMCIGALT 327 (369)
Q Consensus 255 ~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg--~T~~yL~kvi~r~t~~Ga~~l~~ia 327 (369)
+..++.++....+++++|-| ..+||+|++. =|..||. +|.+-|++-+ ..=+.|+.++++.
T Consensus 60 ~~a~~gl~~l~~si~~~fry--------~Rlar~L~~~---~~~~~P~k~~~~~~l~~Gl--~~nl~Gmllt~lG 121 (183)
T PF12263_consen 60 FLAICGLVALFFSIFWSFRY--------TRLARRLRSP---NPAKRPSKADVVRLLRIGL--IINLVGMLLTLLG 121 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHhccc---CCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33455566666666666666 5668999954 5889997 7888877654 3333344444443
No 14
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=41.18 E-value=1.2e+02 Score=32.36 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhHHHhcccCcccc-hhHHHHHHHHHHHHHHHHh
Q 017579 304 LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTG-ILLAVTIIYQYFETFEKER 360 (369)
Q Consensus 304 T~~yL~kvi~r~t~~Ga~~l~~ia~lp~~~g~~ggGts-lLI~Vgv~~~~~~qi~~e~ 360 (369)
-.+.++|....++-+-|-.+.++++++..+ .||+| .+-+||+++-.-++|.++-
T Consensus 306 KAEE~qK~mgCvgKIlG~vitaVsvvAAvf---TGGASLAlAaVGlAL~aaDeI~qa~ 360 (593)
T PRK15374 306 KAEETNRIMGCIGKVLGALLTIVSVVAAVF---TGGASLALAAVGLAVMVADEIVKAA 360 (593)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888876544 36888 4788999998888776654
No 15
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=40.73 E-value=31 Score=35.10 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhh----hhhcCCCHHHHHHHHHHcCCcccccccc-----hHHHHHHhhhhhhhhHH
Q 017579 254 FHALFYLVFMLSACALFSKTW----IEVSGSSARDVAKQLKEQQMVMPGHREA-----NLQKELNRYIPTAAAFG 319 (369)
Q Consensus 254 ~~~i~Y~~~~~~l~i~Fs~fy----~~is~~~p~diA~~Lkk~g~~IpG~Rpg-----~T~~yL~kvi~r~t~~G 319 (369)
++.+++++++.++ =+|.| .--...+++++.+.|++.|.. ||.+-. ..++.|.+-.+.++|+|
T Consensus 89 ~G~~~f~~ll~~l---S~fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~-~G~~k~~id~~~ie~~l~~~~~~i~WV~ 159 (382)
T TIGR02876 89 IGILLFLAIVYFL---SNFIWKIDITGVKGETPYEIRKQLKEMGIK-PGVWKFSVDVYKLERKLLDRVPEIMWAG 159 (382)
T ss_pred HHHHHHHHHHHHH---hheEEEEEEECCCCCCHHHHHHHHHHcCCC-cCeeeCCCCHHHHHHHHHhhCCCcEEEE
Confidence 4555555554433 36888 444467899999999999944 565542 56677777777777765
No 16
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=37.09 E-value=33 Score=34.85 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hhhc---CCCHHHHHHHHHHcCCcccccccc-h----HHHHHHhhhhhhhhHH
Q 017579 255 HALFYLVFMLSACALFSKTW-IEVS---GSSARDVAKQLKEQQMVMPGHREA-N----LQKELNRYIPTAAAFG 319 (369)
Q Consensus 255 ~~i~Y~~~~~~l~i~Fs~fy-~~is---~~~p~diA~~Lkk~g~~IpG~Rpg-~----T~~yL~kvi~r~t~~G 319 (369)
+.+++++++. ++=+|.| ++++ ..+++++.+.|++.|..-.=.+.. + .++.|.+-++-++|+|
T Consensus 93 G~~~f~~~l~---~lS~fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~~id~~~~ie~~l~~~~~~i~WV~ 163 (385)
T PF06898_consen 93 GIVLFLALLY---ILSSFIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKFKIDSCEEIEKKLRKQFPDISWVG 163 (385)
T ss_pred HHHHHHHHHH---HHcCeEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeecCCChHHHHHHHHHhhCCCeEEEE
Confidence 4455555443 3446777 3554 478899999999998664333434 4 5566666666666655
No 17
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.79 E-value=33 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHcCCcccccccc---hHHHHHHhhhhhh
Q 017579 279 GSSARDVAKQLKEQQMVMPGHREA---NLQKELNRYIPTA 315 (369)
Q Consensus 279 ~~~p~diA~~Lkk~g~~IpG~Rpg---~T~~yL~kvi~r~ 315 (369)
.-||++||+.||++-..=.-.+++ ..-..|+-||+|+
T Consensus 22 ~~dp~~IA~SLk~Sae~S~RRk~~pf~SAMSML~FYINRA 61 (86)
T PF11373_consen 22 SDDPKKIAASLKRSAEHSRRRKATPFRSAMSMLNFYINRA 61 (86)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhcc
Confidence 569999999999766554433433 4556777777775
No 18
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=33.18 E-value=45 Score=26.73 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=34.9
Q ss_pred HcCCcccccccc-hHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 017579 291 EQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVL 329 (369)
Q Consensus 291 k~g~~IpG~Rpg-~T~~yL~kvi~r~t~~Ga~~l~~ia~l 329 (369)
|.|...||--|| +..-.+.|..-+.|++.++.-++++.+
T Consensus 31 E~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 31 EAGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred cCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999 999999999999999999988888776
No 19
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=29.78 E-value=33 Score=35.69 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=13.7
Q ss_pred cCCcccccccc-hHHHHHHhhh
Q 017579 292 QQMVMPGHREA-NLQKELNRYI 312 (369)
Q Consensus 292 ~g~~IpG~Rpg-~T~~yL~kvi 312 (369)
....|||+||| .-.+.+++..
T Consensus 37 k~v~IpGFRkGKvP~~ii~~ry 58 (441)
T COG0544 37 KKVKIPGFRKGKVPRKVIEQRY 58 (441)
T ss_pred hhCcCCCCCCCCCCHHHHHHHH
Confidence 35679999999 4444444433
No 20
>PRK01490 tig trigger factor; Provisional
Probab=29.12 E-value=44 Score=34.22 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhhh
Q 017579 280 SSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIPT 314 (369)
Q Consensus 280 ~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~r 314 (369)
++++++.+.++ +....|||+||| .-...+++...+
T Consensus 19 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGkvP~~ii~k~~g~ 60 (435)
T PRK01490 19 VPAEEIEKAVDKALKKLAKTVRIPGFRKGKVPRKIVEQRYGE 60 (435)
T ss_pred EcHHHHHHHHHHHHHHHHhhCcCCCccCCCCCHHHHHHHHhH
Confidence 45555554443 345789999999 555666665543
No 21
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=28.97 E-value=2.4e+02 Score=31.38 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHcCCcc-cccccchHHHHHHhhhhhhhhHHHHHHHHHHHhHHHhcccC--cccchhHHHHHHHHHHHH
Q 017579 279 GSSARDVAKQLKEQQMVM-PGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFET 355 (369)
Q Consensus 279 ~~~p~diA~~Lkk~g~~I-pG~Rpg~T~~yL~kvi~r~t~~Ga~~l~~ia~lp~~~g~~g--gGtslLI~Vgv~~~~~~q 355 (369)
|.+.+|.++++++.|--. |-.+|..-.+++++....+.++ +-+.+++..+++-+. ...-++++++..++.+++
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~l----L~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe 76 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPEKKVSPLLKFLGFFWNPLSWV----MEAAAIIAIALENWVDFVIILGLLLLNATIGFIEE 76 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhchHHHH----HHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHH
Confidence 467899999999999765 3333345566777666665432 222223333344322 222245666677888888
Q ss_pred HHHHhhh
Q 017579 356 FEKERAS 362 (369)
Q Consensus 356 i~~e~~~ 362 (369)
-++|+..
T Consensus 77 ~~a~~~~ 83 (755)
T TIGR01647 77 NKAGNAV 83 (755)
T ss_pred HHHHHHH
Confidence 8887744
No 22
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=27.16 E-value=47 Score=33.65 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhhh
Q 017579 280 SSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIPT 314 (369)
Q Consensus 280 ~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~r 314 (369)
++++++.+.++ +....|||+||| .-...++|...+
T Consensus 7 v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~~i~k~~g~ 48 (408)
T TIGR00115 7 VPAEEVEEEVDKALKELAKKVKIPGFRKGKVPRSVVEKRYGK 48 (408)
T ss_pred ECHHHHHHHHHHHHHHHHhhCCCCCccCCCCCHHHHHHHHhH
Confidence 45555555553 456789999999 666666665543
No 23
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=26.07 E-value=1.2e+02 Score=21.19 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccCC
Q 017579 342 ILLAVTIIYQYFETFEKERASELGFF 367 (369)
Q Consensus 342 lLI~Vgv~~~~~~qi~~e~~~e~~~~ 367 (369)
.++.+..+++-.++++.|-..||..|
T Consensus 17 ~l~~~p~i~~~i~~~~~~~~~em~~f 42 (53)
T PF01484_consen 17 CLITVPSIYNDIQNFQSELDDEMEEF 42 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999988888653
No 24
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=25.54 E-value=88 Score=32.83 Aligned_cols=108 Identities=8% Similarity=-0.021 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCHH-HHHHHHHHcCCcccccccc-hHHHHHHhhhhhhhhHHHHHHHHHHHhHHHh
Q 017579 256 ALFYLVFMLSACALFSKTWIEVSGSSAR-DVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVLADFM 333 (369)
Q Consensus 256 ~i~Y~~~~~~l~i~Fs~fy~~is~~~p~-diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r~t~~Ga~~l~~ia~lp~~~ 333 (369)
..+|.++++++.++|++||+.+ ..+.. -=+|+..||=-.=-+..|| .--|-.+|+++|.---=+++=++...+-.++
T Consensus 358 ~p~~~iiy~ilii~fs~ffs~~-~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~l 436 (474)
T PTZ00219 358 DPIHTILYIVFVLFSCALFSKT-WIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTIL 436 (474)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999988 32221 3467777777677889999 7779999999996554443333333221222
Q ss_pred -cccCcccchhHHHHHHHHHHHHHHHHhhhhcc
Q 017579 334 -GAIGSGTGILLAVTIIYQYFETFEKERASELG 365 (369)
Q Consensus 334 -g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~ 365 (369)
...+ ..+==-.+-++.....|..+|-.+|--
T Consensus 437 p~~~~-~~~gGTslLI~VgV~~~~~e~~~~e~~ 468 (474)
T PTZ00219 437 ADFLG-AIGSGTGILLAVTIIYQYYETFAKEKE 468 (474)
T ss_pred HHHHH-hcCCchhhhhhHHHHHHHHHHHHHHHh
Confidence 2332 211111122556777778888788753
No 25
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=24.67 E-value=79 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=18.3
Q ss_pred hhhhhcCCCHHHHHHHHHHcCCc
Q 017579 273 TWIEVSGSSARDVAKQLKEQQMV 295 (369)
Q Consensus 273 fy~~is~~~p~diA~~Lkk~g~~ 295 (369)
.|..--+.+.+++.+.|+++|+|
T Consensus 23 ~fl~~~~~~~~~vl~~l~~nGg~ 45 (53)
T PF10905_consen 23 QFLRQRQLDWEDVLEWLRENGGY 45 (53)
T ss_pred HHHHHcCCCHHHHHHHHHHcCCC
Confidence 34333388999999999999986
No 26
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=23.88 E-value=1.9e+02 Score=27.97 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 017579 252 NPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVL 329 (369)
Q Consensus 252 ~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg~T~~yL~kvi~r~t~~Ga~~l~~ia~l 329 (369)
++++.++|.+++.+...++.|+-....=-.-+|..+++ ++ .-++|....++.+|-..+|.++.-
T Consensus 131 n~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~~-------------~~~~~i~~~asilGl~vvGal~as 194 (264)
T PF03613_consen 131 NILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-QS-------------GLLQKITEAASILGLMVVGALIAS 194 (264)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778877777766776665554112234445555 22 346889999999999999987754
No 27
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.56 E-value=1.4e+02 Score=26.61 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHcCCcccccccc-hHHHHHHh
Q 017579 280 SSARDVAKQLKEQQMVMPGHREA-NLQKELNR 310 (369)
Q Consensus 280 ~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~k 310 (369)
=||||+|+++++.- .++..++. ..++....
T Consensus 51 G~P~~iA~~i~~~~-~i~~~~~~~~~~~~~~~ 81 (181)
T PF08006_consen 51 GSPKEIAREILAEY-SIKEEEKKKSWRNILRA 81 (181)
T ss_pred CCHHHHHHHHHHhh-hhhhhhccchhhhhHHH
Confidence 39999999998654 34555554 44444433
No 28
>COG4709 Predicted membrane protein [Function unknown]
Probab=22.47 E-value=1.3e+02 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHcCCcccccccc---hHHHHHHhhh
Q 017579 280 SSARDVAKQLKEQQMVMPGHREA---NLQKELNRYI 312 (369)
Q Consensus 280 ~~p~diA~~Lkk~g~~IpG~Rpg---~T~~yL~kvi 312 (369)
=||||+|.+.+.+. |.|.- +|.++..|-+
T Consensus 51 G~P~eiA~ei~s~~----~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 51 GDPKEIAAEILSER----GIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred CCHHHHHHHHHHHc----cchHHhccCcccchHHHH
Confidence 48999999988665 33431 5666666643
No 29
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.33 E-value=76 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=25.6
Q ss_pred hhhhhhcCCCHHHHHHHHHHcCCcccc---cccc-hHHHHHHh
Q 017579 272 KTWIEVSGSSARDVAKQLKEQQMVMPG---HREA-NLQKELNR 310 (369)
Q Consensus 272 ~fy~~is~~~p~diA~~Lkk~g~~IpG---~Rpg-~T~~yL~k 310 (369)
+|-|+=|..+++++++.|++.|..++= +=|+ .+.+||++
T Consensus 34 ~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 34 VFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp EEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 345666678889999999999966432 1124 78888887
No 30
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.03 E-value=4.6e+02 Score=21.95 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCCccccc-----hhHHHHHHHHHHHhHHHHHH
Q 017579 14 LLGIIIAIGEAVAYVLSGM-YGSVNQLG-----VGNAILIIVQLCFAGIIVIC 60 (369)
Q Consensus 14 ~lti~la~iqa~~~v~~g~-~~~~~~~~-----~~~~~~ivl~L~~Gt~~lmw 60 (369)
..-+++|++|.+....... .+...+.. ..+.+.+++.++.||+-+|+
T Consensus 48 ~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 48 GTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445678888888765322 12111112 23556678888899988877
Done!