Query 017579
Match_columns 369
No_of_seqs 147 out of 1042
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_A SEC sixty-one protein h 100.0 1.9E-84 6.6E-89 663.2 24.0 354 7-365 115-476 (490)
2 2wwb_A Protein transport prote 100.0 7.3E-84 2.5E-88 657.4 27.5 359 7-366 111-470 (476)
3 3mp7_A Preprotein translocase 100.0 1.8E-80 6E-85 632.9 22.4 340 7-364 109-458 (482)
4 1rh5_A Preprotein translocase 100.0 9.6E-77 3.3E-81 599.3 31.8 319 7-364 106-426 (436)
5 3dl8_G Preprotein translocase 100.0 1.1E-71 3.6E-76 561.9 23.6 290 8-364 112-422 (429)
6 2zjs_Y Preprotein translocase 100.0 3.8E-71 1.3E-75 557.8 24.6 291 8-364 111-423 (434)
7 3j01_A Preprotein translocase 100.0 1.8E-70 6E-75 553.5 20.1 292 8-362 109-419 (435)
8 3din_C Preprotein translocase 100.0 2.6E-70 8.9E-75 551.7 20.9 283 8-364 116-417 (431)
9 2nsc_A Trigger factor, TF; cha 64.1 3.7 0.00013 32.9 2.5 34 280-313 19-59 (109)
10 1p9y_A Trigger factor, TF; alp 57.1 5.7 0.0002 32.3 2.5 34 280-313 22-62 (121)
11 2d3o_1 Trigger factor, TF; rib 50.4 4.6 0.00016 32.4 0.9 22 292-313 36-58 (112)
12 3gty_X Trigger factor, TF; cha 26.1 22 0.00074 35.2 1.3 36 279-314 18-60 (433)
13 1t11_A Trigger factor, TF; hel 26.0 30 0.001 33.7 2.4 35 279-313 21-62 (392)
14 1w26_A Trigger factor, TF; cha 24.2 36 0.0012 33.6 2.6 21 293-313 38-59 (432)
No 1
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=1.9e-84 Score=663.17 Aligned_cols=354 Identities=29% Similarity=0.485 Sum_probs=309.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
++|++|||+|+++|++||++++.++.++ .+.++..++++++||++|++++|||||+||||||+|||+||+|++|||++
T Consensus 115 k~~~~tR~lti~la~iQa~~~~~~~~~~--~~~~~~~~~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~ 192 (490)
T 2ww9_A 115 LFQSLTKVFAIVQYVILTNIFIFAGYFG--DDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATN 192 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHH
Confidence 4689999999999999999999865443 23344467889999999999999999999999999999999999999999
Q ss_pred HhHhhhccceecCCCCC--ccchhHHHHHHHH-HhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEee
Q 017579 87 IIWKAFSPTTINSGRGA--EFEGAVIALFHLL-ITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPV 163 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~--~~~G~i~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv 163 (369)
+|++++++.+.+.++|. |++|+++++++.+ ...+++..++.++++|.++|+++.+++++++++++||+|++||||||
T Consensus 193 lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~~r~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPI 272 (490)
T 2ww9_A 193 LVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPI 272 (490)
T ss_dssp HHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCSHHHHHHHHHHHHHHHHHTTCCEECCC
T ss_pred HHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHHhhccccHHHHHHHHHHHHHHHheeeeeEEEEEE
Confidence 99999998765555544 7899998887765 24433333455778899999998999999999999999999999999
Q ss_pred eeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHH----HHhhhcCCCccccccccccccccCCCccccccccccc
Q 017579 164 RSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQ----LMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYY 239 (369)
Q Consensus 164 ~~~k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~----~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~ 239 (369)
||+|++|+++|+|+|+|||||||+|||||++++|+++++ ++++.++++...+++|+|.+. .++.+|++++++|
T Consensus 273 qyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~~~~~~~~ 349 (490)
T 2ww9_A 273 RSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENA---NNLLAVPTFPLSL 349 (490)
T ss_dssp BCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCC---SSSSCSCSSBSCC
T ss_pred EEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhcc---ccccchhHHHHHH
Confidence 999999999999999999999999999999999999988 665433333233455667532 2467889999999
Q ss_pred ccCCcccchhccC-chHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhhhhhhhH
Q 017579 240 ITAPSSLADMAAN-PFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAF 318 (369)
Q Consensus 240 ~s~~~~~~~~~~~-p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg~T~~yL~kvi~r~t~~ 318 (369)
++||++..+.+.+ |+|.++|.++++++|++|+|||++++++||||+||||||||++|||+|||+|+|||+|+++|+|++
T Consensus 350 l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG~T~~yL~~vi~rit~~ 429 (490)
T 2ww9_A 350 LAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVIPIAAVT 429 (490)
T ss_dssp SSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCCCSTTHHHHHHHHHHHH
T ss_pred hCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCchhHHHHHHHHHHHHHH
Confidence 9999888777888 999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhcc
Q 017579 319 GGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELG 365 (369)
Q Consensus 319 Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~ 365 (369)
||+|++++|++|++++..|||||+||+|||++|++||+++|+.++-|
T Consensus 430 Ga~~L~~lavlp~~l~~~ggGTslLI~VgV~~~~~~qi~~e~~~~g~ 476 (490)
T 2ww9_A 430 GASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIEYQQSGG 476 (490)
T ss_dssp HHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999987789999999999999999999999977633
No 2
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=7.3e-84 Score=657.38 Aligned_cols=359 Identities=69% Similarity=1.156 Sum_probs=319.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
++|++|||+|+++|++||++++.++.++...+.++.+++++++||++|++++|||||+||||||+|||+||+|++|||++
T Consensus 111 k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~It~g~GiGnGiSLiI~agI~~~ 190 (476)
T 2wwb_A 111 LFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICET 190 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 45889999999999999999988554443334455567889999999999999999999999999999999999999999
Q ss_pred HhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeec
Q 017579 87 IIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSK 166 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~ 166 (369)
+.|+.++|.+.+.+++.|++|++.++++.+.+++++.+++.++|+|+++|++..+++++++++++||+|++||||||||+
T Consensus 191 l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~~~~~ll~~~~v~~~vV~~q~~~rrIPv~ya 270 (476)
T 2wwb_A 191 IVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSA 270 (476)
T ss_dssp HHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHHHHHHHHHHHHHHHHHHHHHHCCBCCCCCBC
T ss_pred HHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccchHHHHHHHHHHHhheeEEEEEEEEEEEEec
Confidence 99999999766666667889988888877666777778888999999888888888888899999999999999999999
Q ss_pred cCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccc-cCCCcccccccccccccCCcc
Q 017579 167 NARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESE-YSGGQYVPVGGIAYYITAPSS 245 (369)
Q Consensus 167 k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~-~~~~~~~~~~gi~~~~s~~~~ 245 (369)
|.+|+++|+|+|+|||||||+|||||++++|++++++++++++++...+++++|.+.+ +..++++|++|+++|++||++
T Consensus 271 k~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~ 350 (476)
T 2wwb_A 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPES 350 (476)
T ss_dssp SSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSS
T ss_pred ccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcch
Confidence 9999999999999999999999999999999999998765545444445566675421 112467999999999999988
Q ss_pred cchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhhhhhhhHHHHHHHH
Q 017579 246 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGA 325 (369)
Q Consensus 246 ~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg~T~~yL~kvi~r~t~~Ga~~l~~ 325 (369)
..+.+.+|+|.++|.++++++|++|+++|.+++++||||+||||||||++|||+||.+|+|||+|+++|+|++||+|+++
T Consensus 351 ~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~ 430 (476)
T 2wwb_A 351 FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGA 430 (476)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777899999999999999999999999999779999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhccC
Q 017579 326 LTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF 366 (369)
Q Consensus 326 ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~~ 366 (369)
+|++|++++.++||||+||+|||+++++||++||+. |||.
T Consensus 431 lavlp~~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~-~~~~ 470 (476)
T 2wwb_A 431 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGS 470 (476)
T ss_dssp HHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHT-CCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hhhh
Confidence 999999998788999999999999999999999999 9975
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=1.8e-80 Score=632.86 Aligned_cols=340 Identities=34% Similarity=0.682 Sum_probs=265.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccc-cchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQ-LGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICE 85 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~-~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~ 85 (369)
++|++|||+|+++|++||.+++.++.+++... .++...+++++||++||+++|||||+||| ||+|||+||+|++|||+
T Consensus 109 k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~~lmwL~E~It~-~GiGnGiSLiI~agI~~ 187 (482)
T 3mp7_A 109 FYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISLFIAAGVSQ 187 (482)
T ss_dssp -----CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHHHHHHHHHHHHH-HSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccccHHHHHHHHHH
Confidence 57889999999999999999998765433211 22346788999999999999999999999 99999999999999999
Q ss_pred HHhHhhhccceecCC-----CCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCch--hHHHHHHHHHHHHHhhheeccE
Q 017579 86 NIIWKAFSPTTINSG-----RGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP--NVTNLLATVLIFLIVIYFQGFR 158 (369)
Q Consensus 86 ~l~~~~~~~~~~~~~-----~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~i~v~~~vV~l~~~~ 158 (369)
++|++++++.+.+.+ +|.|++|+++.+++.+.. .++.++++| ++| +++.+++++++++++||+|++|
T Consensus 188 ~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~-----~~l~~~~~~-~lp~~~l~~l~~~l~v~~~vV~~q~~~ 261 (482)
T 3mp7_A 188 TILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILK-----GDLWGAIYR-GGSAPDMLSVVATIVVFFIVVYFESMR 261 (482)
T ss_dssp HHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHH-----CCSCSSCCC-SSSSCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhhcccccccccccccccchHHHHHHHHhc-----chhhHHHhh-ccchhHHHHHHHHHHHHHHhheeEeeE
Confidence 999999988543322 356788998887765432 233456777 777 7888889999999999999999
Q ss_pred EEEeeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccc
Q 017579 159 VVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAY 238 (369)
Q Consensus 159 r~IPv~~~k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~ 238 (369)
|||||||+|++ +++|+|+|+|||||||+|||||++++|+++++++++. ..+++++|++. ..+|++++++
T Consensus 262 rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~-----~~~~l~~~~~~-----~~~~~~g~~~ 330 (482)
T 3mp7_A 262 VEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL-----GHPWLGRFDPT-----TGSPISGFVL 330 (482)
T ss_dssp EEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT-----SCCSSBCCCCT-----TSCCCCBSGG
T ss_pred EEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc-----cchhhhhhccc-----ccccchhHHH
Confidence 99999999987 8999999999999999999999999999999987532 11355666432 1358899999
Q ss_pred cccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-h-HHHHHHhhhhhhh
Q 017579 239 YITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-N-LQKELNRYIPTAA 316 (369)
Q Consensus 239 ~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~-T~~yL~kvi~r~t 316 (369)
|++||.+..+++++|+|.++|.++++++|++|||||+++|++||||+||||||||++|||+||| + |+|||+|+++|+|
T Consensus 331 ~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlkk~G~~IpGiRpG~~tt~~yL~~vi~rit 410 (482)
T 3mp7_A 331 YVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVT 410 (482)
T ss_dssp GSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTTSTTCC------CTHH
T ss_pred HhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCcCCCchhHHHHHHHHHHHHH
Confidence 9999988777888999999999999999999999999999999999999999999999999999 6 7999999999999
Q ss_pred hHHHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 317 AFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 317 ~~Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
++||+|++++|++|++++..|||||+||+|||++|++||+++|+.+|+
T Consensus 411 ~~Ga~~L~~iavlp~~l~~~ggGTslLI~VgV~~~~~~qi~s~~~~~~ 458 (482)
T 3mp7_A 411 FWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHhccCCceeeeeeHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999889999999999999999999999998775
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=9.6e-77 Score=599.28 Aligned_cols=319 Identities=38% Similarity=0.736 Sum_probs=263.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHHHHHH
Q 017579 7 PRNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICEN 86 (369)
Q Consensus 7 ~f~~~qk~lti~la~iqa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~agI~~~ 86 (369)
++|++|||+|+++|++||++++.++.+.+ .++.+.+++++||++||+++|||||+||| ||+|||+||+|++|||++
T Consensus 106 ki~~~tR~lti~la~iQa~~~~~~g~~~~---~~~~~~~~~vl~L~~Gt~~lmwL~E~It~-~GiGnGiSLiI~~gI~~~ 181 (436)
T 1rh5_A 106 LFQGCQKLLSIIMCFVEAVLFVGAGAFGI---LTPLLAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGVSQT 181 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccHHHHHHHHHHH
Confidence 57899999999999999999998643322 23446778999999999999999999999 999999999999999999
Q ss_pred HhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEeeeec
Q 017579 87 IIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSK 166 (369)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IPv~~~ 166 (369)
+|++++++ .|+++++++.+.++++ +..++..+++++++++++||+|++||||||||+
T Consensus 182 lp~~~~~~-----------~G~i~~~~~~~~~~~~------------~~~~l~~l~~~l~v~~~vV~~~~~~rrIPvqya 238 (436)
T 1rh5_A 182 IFVGALGP-----------EGYLWKFLNSLIQGVP------------NIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHG 238 (436)
T ss_dssp HHHHHHST-----------TCHHHHHHHHTTTTCC------------CGGGTHHHHHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred HHHHHhcc-----------cchHHHHHHHHhcccc------------hHHHHHHHHHHHHHHHHHHhhcceEEEEEEEec
Confidence 99999875 2688777664332211 111255667778888999999999999999999
Q ss_pred cCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccccCCccc
Q 017579 167 NARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSL 246 (369)
Q Consensus 167 k~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~gi~~~~s~~~~~ 246 (369)
|.+|+++|+|+|+|||||||+|||||++++|+++++++++. +. +++++|+ +.+|++|++||++||++.
T Consensus 239 k~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~-~~----~~~g~~~-------~~~~~~gl~yyl~pp~~~ 306 (436)
T 1rh5_A 239 RIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM-GI----PILGHYE-------GGRAVDGIAYYLSTPYGL 306 (436)
T ss_dssp SSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT-SC----CTTCCBC-------SSSBSSSTTGGGCCCCSS
T ss_pred ccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc-Cc----chhhhcc-------cccccccchhhcCChhHH
Confidence 99999999999999999999999999999999999987432 11 2455663 247899999999998765
Q ss_pred chhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-h-HHHHHHhhhhhhhhHHHHHHH
Q 017579 247 ADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-N-LQKELNRYIPTAAAFGGMCIG 324 (369)
Q Consensus 247 ~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~-T~~yL~kvi~r~t~~Ga~~l~ 324 (369)
.+...+|.|..+|.++++++|++|+|||+++|++||||+||||||||++|||+||| + |+|||+|+++|+|++||+|++
T Consensus 307 ~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~l~ 386 (436)
T 1rh5_A 307 SSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVG 386 (436)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555788888999999999999999999999999999999999999999999999 7 799999999999999999999
Q ss_pred HHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 325 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 325 ~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
++|++|++++.+|||||+||+|||++|++||+++|+.+|+
T Consensus 387 ~ia~lp~~l~~~~gGTslLI~VgV~~~~~~qi~~~~~~~~ 426 (436)
T 1rh5_A 387 FLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSEL 426 (436)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998778999999999999999999999998775
No 5
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=1.1e-71 Score=561.88 Aligned_cols=290 Identities=18% Similarity=0.267 Sum_probs=244.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc-------CCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHH
Q 017579 8 RNGAQKLLGIIIAIGEAVAYVLSGMY-------GSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA 80 (369)
Q Consensus 8 f~~~qk~lti~la~iqa~~~v~~g~~-------~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~ 80 (369)
+|++|||+|+++|++||.+++.++.. +...+.++.+.++++++|++||+++|||||+||| ||+|||+||+|+
T Consensus 112 i~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~E~It~-~GiGnGiSliI~ 190 (429)
T 3dl8_G 112 INEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITE-KGIGNGASLIIF 190 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcCcchHHHHH
Confidence 56788999999999999999876533 1122334557788999999999999999999999 999999999999
Q ss_pred HHHHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEE
Q 017579 81 TNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVV 160 (369)
Q Consensus 81 agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~ 160 (369)
+||++++|++++++.+...+ | + .|.+ +++..+++++++++++||+|++|||
T Consensus 191 ~gI~~~lp~~~~~~~~~~~~-g-~-~~~~--------------------------~~l~~l~~~l~vi~~vV~~~~~~rr 241 (429)
T 3dl8_G 191 AGIVANFPNAVIQFYEKVKT-G-D-IGPL--------------------------TLLLIIALIIAIIVGIVYVQEAERR 241 (429)
T ss_dssp HHHHHHTTTTSSCCCCSSSC-S-S-SCTH--------------------------HHHHHHHHHHHHHHHHTCSCCCCCC
T ss_pred HHHHHHHHHHHHhHHHHhcC-C-c-chHH--------------------------HHHHHHHHHHHHHHHHHHheeeEEE
Confidence 99999999999887532211 1 1 1221 2356677888888999999999999
Q ss_pred EeeeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccc
Q 017579 161 LPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPV 233 (369)
Q Consensus 161 IPv~~~k~-------~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 233 (369)
|||||+|+ +|+++|+|+|+|||||||+|||||++++|+++++++. + +|.
T Consensus 242 IPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~----~--------~~~------------ 297 (429)
T 3dl8_G 242 IPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQ----N--------PFI------------ 297 (429)
T ss_dssp CCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCS----S--------CCC------------
T ss_pred EEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcc----h--------HHH------------
Confidence 99999974 5799999999999999999999999999999998652 1 232
Q ss_pred ccccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhh
Q 017579 234 GGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYI 312 (369)
Q Consensus 234 ~gi~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi 312 (369)
+++.+|++|+ +|+| .++++++|++|+|||+++ ++||||+||||||||++|||+||| +|+|||+|++
T Consensus 298 ~~~~~~l~~~--------~~~y----~~~y~~lii~Fs~fy~~i-~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi 364 (429)
T 3dl8_G 298 KVIADMFQPG--------AIFY----NFLYVTFIVFFTYFYTAV-LINPVELAENLHKAGAFIPGVRPGQDTVKYLERII 364 (429)
T ss_dssp CTTTTTTTTT--------HHHH----HHHHHHHHHHHHHHHHTC-TTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--------chHH----HHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHH
Confidence 2456778763 3544 445555789999999999 799999999999999999999999 9999999999
Q ss_pred hhhhhHHHHHHHHHHHhHHHhcc-cC-----cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 313 PTAAAFGGMCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 313 ~r~t~~Ga~~l~~ia~lp~~~g~-~g-----gGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
+|+|++||+|++++|++|++++. .| ||||+||+|||++|++||+++|..++.
T Consensus 365 ~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~l~~~~ 422 (429)
T 3dl8_G 365 NRLIFFGALFLSVIALIPILISVWFNIPFYFGGTTALIVVGVALDTFRQIETYLIQKK 422 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCSCCCSTHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 45 899999999999999999999987653
No 6
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=3.8e-71 Score=557.85 Aligned_cols=291 Identities=21% Similarity=0.296 Sum_probs=240.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh---ccCC--ccc--cchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHH
Q 017579 8 RNGAQKLLGIIIAIGEAVAYVLSG---MYGS--VNQ--LGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA 80 (369)
Q Consensus 8 f~~~qk~lti~la~iqa~~~v~~g---~~~~--~~~--~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~ 80 (369)
+|++|||+|+++|++||++++.+. .++. ..+ .++.+.++++++|++||+++|||||+||| ||+|||+||+|+
T Consensus 111 i~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwLgE~It~-~GIGnGiSliI~ 189 (434)
T 2zjs_Y 111 INQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITE-YGIGNGTSLIIF 189 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccccHHHHH
Confidence 356778999999999999999863 1121 123 34556788999999999999999999999 999999999999
Q ss_pred HHHHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEE
Q 017579 81 TNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVV 160 (369)
Q Consensus 81 agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~ 160 (369)
+|||+++|+++.+..+... .+ + .+.. ..++.+++++++++++||+|++|||
T Consensus 190 ~gIv~~lp~~~~~~~~~~~-~~-~-~~~~--------------------------~~~~~l~~~~~vi~~vV~~~~~~rr 240 (434)
T 2zjs_Y 190 AGIVVEWLPQILRTIGLIR-TG-E-VNLV--------------------------AFLFFLAFIVLAFAGMAAVQQAERR 240 (434)
T ss_dssp HHHHHTHHHHHHHHHHTTT-TT-S-SCHH--------------------------HHHHHHHHHHHHHHHHHHHHHCEEE
T ss_pred HHHHHHHHHHHHHHHHHhc-cC-c-ccHH--------------------------HHHHHHHHHHHHHHHHHHheeeEEE
Confidence 9999999998876542111 00 0 0111 0134566777888899999999999
Q ss_pred EeeeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccc
Q 017579 161 LPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPV 233 (369)
Q Consensus 161 IPv~~~k~-------~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 233 (369)
|||||+|+ +|+++|+|+|+|||||||+|||||++++|+++++++. ++ .|.
T Consensus 241 IPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~---~~--------~~~------------ 297 (434)
T 2zjs_Y 241 IPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQ---DN--------PVL------------ 297 (434)
T ss_dssp EEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCT---TC--------HHH------------
T ss_pred EeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhc---cc--------hHH------------
Confidence 99999984 2789999999999999999999999999999998653 11 232
Q ss_pred ccccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhh
Q 017579 234 GGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYI 312 (369)
Q Consensus 234 ~gi~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi 312 (369)
+++++|++|+ +|+|.++|.+ ++++|+|||+++ ++||||+||||||||++|||+||| +|+|||+|++
T Consensus 298 ~~~~~~l~~~--------~~~y~~~y~~----lii~Fs~fyt~i-~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi 364 (434)
T 2zjs_Y 298 QGIANFFNPT--------RPSGLFIEVL----LVILFTYVYTAV-QFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIV 364 (434)
T ss_dssp HHHHHHHCSS--------SHHHHHHHHH----HHHHHHHHHHHC-SSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCC--------ChHHHHHHHH----HHHHHHHHHHHH-ccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHH
Confidence 2456778764 5777666665 567999999999 799999999999999999999999 9999999999
Q ss_pred hhhhhHHHHHHHHHHHhHHHhccc-C------cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 313 PTAAAFGGMCIGALTVLADFMGAI-G------SGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 313 ~r~t~~Ga~~l~~ia~lp~~~g~~-g------gGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
+|+|++||+|++++|++|++++.. | ||||+||+|||++|++||+++|..+|+
T Consensus 365 ~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~ 423 (434)
T 2zjs_Y 365 SRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRS 423 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987644 3 899999999999999999999997664
No 7
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=1.8e-70 Score=553.49 Aligned_cols=292 Identities=18% Similarity=0.276 Sum_probs=242.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc-----CCccccchhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHH
Q 017579 8 RNGAQKLLGIIIAIGEAVAYVLSGMY-----GSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATN 82 (369)
Q Consensus 8 f~~~qk~lti~la~iqa~~~v~~g~~-----~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~ag 82 (369)
+|++|||+|+++|++||.+++.++.. +...+.++...++++++|++||+++|||||+||| ||+|||+||+|++|
T Consensus 109 i~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~E~It~-~GiGnGiSLiI~~g 187 (435)
T 3j01_A 109 ISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE-RGIGNGISIIIFAG 187 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHHHHSTT-SCCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccHHHHHHH
Confidence 46688999999999999999876532 1112234446678999999999999999999999 99999999999999
Q ss_pred HHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEe
Q 017579 83 ICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLP 162 (369)
Q Consensus 83 I~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IP 162 (369)
||+++|+++.+..+.... + +. +.. ..+..+++++++++++||+|++|||||
T Consensus 188 I~~~lp~~~~~~~~~~~~-~-~~-~~~--------------------------~~l~~~~~~l~vi~~vV~~~~~~rrIP 238 (435)
T 3j01_A 188 IVAGLPPAIAHTIEQARQ-G-DL-HFL--------------------------VLLLVAVLVFAVTFFVVFVERGQRRIV 238 (435)
T ss_dssp HHHHSSTTSSSCCCSSSS-T-TS-SSH--------------------------HHHHHHHHHHHHHHHTTCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHhc-c-cc-hHH--------------------------HHHHHHHHHHHHHHHHHHhheeEEEEE
Confidence 999999998876431110 0 10 110 014556777788899999999999999
Q ss_pred eeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccccc
Q 017579 163 VRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGG 235 (369)
Q Consensus 163 v~~~k~-------~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~g 235 (369)
|||+|+ +|+++|+|+|+|||||||+|||||++++|+++++++.+. .+ ++|. ++
T Consensus 239 vqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~--~~------~~~~------------~~ 298 (435)
T 3j01_A 239 VNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGG--TG------WNWL------------TT 298 (435)
T ss_dssp CCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSC--CC------SSCC------------SS
T ss_pred EEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCC--cc------hhHH------------HH
Confidence 999984 478999999999999999999999999999999875321 00 1342 34
Q ss_pred ccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhh
Q 017579 236 IAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPT 314 (369)
Q Consensus 236 i~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r 314 (369)
+.+|++|+ +|+|.++|.+ ++++|+|||+++ ++||||+||||||||++|||+||| +|+|||+|+++|
T Consensus 299 ~~~~l~~~--------~~~~~~~y~~----lii~F~~fyt~i-~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~r 365 (435)
T 3j01_A 299 ISLYLQPG--------QPLYVLLYAS----AIIFFCFFYTAL-VFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTR 365 (435)
T ss_dssp SSCCCCSS--------GGGGTHHHHH----HHHHHHHHHHHH-SSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHH
T ss_pred HHHHcCCC--------CcHHHHHHHH----HHHHHHHHHHHH-ccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHH
Confidence 66778764 6888888876 467999999999 999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHhccc------CcccchhHHHHHHHHHHHHHHHHhhh
Q 017579 315 AAAFGGMCIGALTVLADFMGAI------GSGTGILLAVTIIYQYFETFEKERAS 362 (369)
Q Consensus 315 ~t~~Ga~~l~~ia~lp~~~g~~------ggGtslLI~Vgv~~~~~~qi~~e~~~ 362 (369)
+|++||+|++++|++|++++.. .||||+||+|||++|++||++++..+
T Consensus 366 it~~Ga~~L~~iavlP~~l~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~ 419 (435)
T 3j01_A 366 LTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMS 419 (435)
T ss_dssp HCHHHHHHHHHHHHHHHHTTSCCSSSSSSCCHHHHHTHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCeecccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 48999999999999999999998744
No 8
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.6e-70 Score=551.69 Aligned_cols=283 Identities=18% Similarity=0.220 Sum_probs=239.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCC---c-cccc-hhHHHHHHHHHHHhHHHHHHHhHhhhhccccCchhHHHHHHH
Q 017579 8 RNGAQKLLGIIIAIGEAVAYVLSGMYGS---V-NQLG-VGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATN 82 (369)
Q Consensus 8 f~~~qk~lti~la~iqa~~~v~~g~~~~---~-~~~~-~~~~~~ivl~L~~Gt~~lmwL~E~it~g~GiGnGiSLiI~ag 82 (369)
+|++|||+|+++|++||.+++.++..+. . .+.+ +...++++++|++||+++|||||+||| ||+|||+||+|++|
T Consensus 116 i~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~E~It~-~GiGnGiSliI~~g 194 (431)
T 3din_C 116 FAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITE-KGIGNGISILIFAG 194 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccchHHHHHHH
Confidence 4677899999999999999987654321 1 1233 457789999999999999999999999 99999999999999
Q ss_pred HHHHHhHhhhccceecCCCCCccchhHHHHHHHHHhcchhHHHHHHHHhhCCchhHHHHHHHHHHHHHhhheeccEEEEe
Q 017579 83 ICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLP 162 (369)
Q Consensus 83 I~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~i~v~~~vV~l~~~~r~IP 162 (369)
||+++|++++++.+ + + .|.+ +++..+++++++++++||+|++|||||
T Consensus 195 I~~~lp~~~~~~~~---~---~-~~~~--------------------------~~l~~l~~~l~vi~~vV~~~~~~rrIP 241 (431)
T 3din_C 195 IVARYPSYIRQAYL---G---G-LNLL--------------------------EWIFLIAVALITIFGIILVQQAERRIT 241 (431)
T ss_dssp HHHHSTTSSSCCSS---C---C-SCTH--------------------------HHHHHHHHHHHHHHHHTTTCCBCCCCC
T ss_pred HHHHHHHHHHHHhc---c---c-ccHH--------------------------HHHHHHHHHHHHHHHHHhheeeEEEEE
Confidence 99999999987642 1 1 1222 235667788888899999999999999
Q ss_pred eeecc-------CCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCccccccc
Q 017579 163 VRSKN-------ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGG 235 (369)
Q Consensus 163 v~~~k-------~~g~~~~~PiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~g 235 (369)
|||+| .+|+++|+|+|+|||||||+|||||++++|+++++++. + +|.
T Consensus 242 vqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~----~--------~~~-------------- 295 (431)
T 3din_C 242 IQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITN----N--------ETL-------------- 295 (431)
T ss_dssp CCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSST----T--------CCC--------------
T ss_pred EEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcc----h--------HHH--------------
Confidence 99998 46899999999999999999999999999999987541 1 231
Q ss_pred ccccccCCcccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHHHHhhhhh
Q 017579 236 IAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPT 314 (369)
Q Consensus 236 i~~~~s~~~~~~~~~~~p~~~i~Y~~~~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpG~Rpg-~T~~yL~kvi~r 314 (369)
.+|++|. +|+ |.++++++|++|||||+++ ++||||+||||||||++|||+||| +|+|||+|+++|
T Consensus 296 -~~~~~~~--------~~~----y~~~y~~lii~Fs~fy~~i-~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~r 361 (431)
T 3din_C 296 -KNLFRAG--------GFL----YLLIYGLLVFFFTYFYSVV-IFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNR 361 (431)
T ss_dssp -CCCSSTT--------HHH----HHHHHHHHHHHHHHHHHTC-TTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHH
T ss_pred -HHHcCCC--------cHH----HHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHH
Confidence 2345541 344 4555555789999999999 799999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHhcc-cC-----cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017579 315 AAAFGGMCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFETFEKERASEL 364 (369)
Q Consensus 315 ~t~~Ga~~l~~ia~lp~~~g~-~g-----gGtslLI~Vgv~~~~~~qi~~e~~~e~ 364 (369)
+|++||+|++++|++|++++. .| ||||+||+|||++|++||+++|..++.
T Consensus 362 it~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~ 417 (431)
T 3din_C 362 VTFIGAVFLVVIALLPYLVQGAIKVNVWIGGTSALIAVGVALDIIQQMETHMVMRH 417 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 44 899999999999999999999986653
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=64.07 E-value=3.7 Score=32.86 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhh
Q 017579 280 SSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 280 ~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
.+++|+.+.++ +....|||+||| .-.+.+++...
T Consensus 19 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 19 FGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ECHHHHHHHHHHHHHHHhccCCCCCcCCCCCCHHHHHHHHh
Confidence 45555554443 245789999999 55565655543
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=57.14 E-value=5.7 Score=32.35 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=21.1
Q ss_pred CCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhh
Q 017579 280 SSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 280 ~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
.+++|+.+.++ +....|||+||| .-.+.+++...
T Consensus 22 v~~~~~~~~~~~~~~~~~k~v~ipGFRkGKvP~~vi~k~yG 62 (121)
T 1p9y_A 22 IAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYG 62 (121)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhhCccCCcCCCCCCHHHHHHHHH
Confidence 44555544443 245799999999 55565655543
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=50.38 E-value=4.6 Score=32.42 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=14.9
Q ss_pred cCCcccccccc-hHHHHHHhhhh
Q 017579 292 QQMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 292 ~g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
....|||+||| .-.+.+++..-
T Consensus 36 k~~~ipGFRkGKvP~~vi~k~yG 58 (112)
T 2d3o_1 36 RDVRVPGFRPGKAPRKVIENRVG 58 (112)
T ss_dssp TTSCBTTBCTTCCCSTTHHHHTT
T ss_pred hhCCCCCcCCCCCCHHHHHHHhC
Confidence 45789999999 54555555443
No 12
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=26.07 E-value=22 Score=35.24 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhhh
Q 017579 279 GSSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIPT 314 (369)
Q Consensus 279 ~~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~r 314 (369)
.++++|+.+.+. +....|||+||| .-.+.+++...+
T Consensus 18 ~v~~~~~~~~~~~~~k~~~k~v~ipGFRkGKvP~~vi~k~yG~ 60 (433)
T 3gty_X 18 VFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGE 60 (433)
T ss_dssp ECCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHTTSTT
T ss_pred EEcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhhH
Confidence 456666655553 346899999999 667777777665
No 13
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=26.00 E-value=30 Score=33.69 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhh
Q 017579 279 GSSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 279 ~~~p~diA~~Lk------k~g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
..+++|+.+.+. +....|||+||| .-.+.++|..-
T Consensus 21 ~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k~yG 62 (392)
T 1t11_A 21 TVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYG 62 (392)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHh
Confidence 345555555553 246899999999 65666665543
No 14
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=24.22 E-value=36 Score=33.58 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=15.2
Q ss_pred CCcccccccc-hHHHHHHhhhh
Q 017579 293 QMVMPGHREA-NLQKELNRYIP 313 (369)
Q Consensus 293 g~~IpG~Rpg-~T~~yL~kvi~ 313 (369)
...|||+||| .-.+.+++..-
T Consensus 38 ~~~ipGFRkGKvP~~vi~~~yG 59 (432)
T 1w26_A 38 KVRIDGFRKGKVPMNIVAQRYG 59 (432)
T ss_dssp HTTCGGGCCSSSCHHHHHHHHC
T ss_pred hCCCCCcCCCCCCHHHHHHHHh
Confidence 4689999999 65666655553
Done!