RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017579
(369 letters)
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional.
Length = 474
Score = 642 bits (1657), Expect = 0.0
Identities = 264/360 (73%), Positives = 317/360 (88%), Gaps = 2/360 (0%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
GAQKLLG++I +GEAVAYV SGMYG ++++G GNAILII+QL FAGI+VI LDELLQKG
Sbjct: 116 EGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKG 175
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YGLGSGISLFIATNICE IIWKAFSPTTIN+GRG EFEGA+IALFHLL TR+DK+RAL+E
Sbjct: 176 YGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKE 235
Query: 129 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 188
AFYR +LPN+TNLLATVL+FL+VIYFQGFRV LP++S+ RGQQ SYPIKLFYTSN+PII
Sbjct: 236 AFYRPHLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPII 295
Query: 189 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 248
LQ+ALVSNLYF SQ++YRR+ NF +NLLG+W+E EYS GQ VPVGG+AYY++ P+S +D
Sbjct: 296 LQTALVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYS-GQSVPVGGLAYYLSPPNSFSD 354
Query: 249 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKE 307
+ +P H + Y+VF+L +CALFSKTWIEVSGSSA+DVAKQLK+Q M M G+R++ ++ +
Sbjct: 355 IINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRV 414
Query: 308 LNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 367
LNRYIPTAA+FGGMCIGALT+LADF+GAIGSGTGILLAVTIIYQY+ETF KE+ F
Sbjct: 415 LNRYIPTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYGFLF 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 292 bits (749), Expect = 2e-95
Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 22/359 (6%)
Query: 10 GAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGN--AILIIVQLCFAGIIVICLDELLQK 67
G QKLL I++ EA +VL+G +G L A+LI +QL GI++I LDEL+ K
Sbjct: 112 GLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSK 171
Query: 68 GYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALR 127
+G+GSGISLFI + + I F+ T G G + ALF + + N
Sbjct: 172 -WGIGSGISLFILAGVSQTIFVGLFNWLTGGQG---LPVGFIPALFSAITSGN----LTL 223
Query: 128 EAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPI 187
+ L+ T++IFLIV+Y + RV +P+ RG +G YP+K Y S +P+
Sbjct: 224 ALLLTTRGLLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPV 283
Query: 188 ILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLA 247
IL AL +N+ QL+ R + +LG Y P+ G+AYY++ P S
Sbjct: 284 ILVRALQANIQLFGQLLQRLG-----IPILG-----TYDSSGASPISGLAYYLSPPHSPY 333
Query: 248 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQ 305
D +P A+ Y +FM+ LF+ W+E +G + A+QL+ M +PG R ++
Sbjct: 334 DWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIE 393
Query: 306 KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 364
K L RYIP GG +G L VLAD +GA+G GTG+LL V+I+YQ +E +E+ E+
Sbjct: 394 KVLERYIPPVTVIGGAIVGLLAVLADLLGALGGGTGLLLTVSIVYQLYEEIAREQLMEM 452
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 234 bits (598), Expect = 1e-73
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 71/365 (19%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
N + L +I+A +++ V++GMYG V G +LI++QL +IV+ L E + K
Sbjct: 97 NQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK- 155
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+G+GISL I I I PT + KVR L
Sbjct: 156 YGIGNGISLLIFAGIAATIPSGLLQPTEVRQ---------------------SKVRDLIS 194
Query: 129 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS-----KNARGQQGSYPIKLFYTS 183
LP + L+AT+++F +V++ Q R +P++S Q P+KL Y
Sbjct: 195 FLQN--LPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAG 252
Query: 184 NMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP 243
+P+I SAL+SN ISQ + G A+++
Sbjct: 253 VIPVIFASALLSNPATISQFLNSNQ--------------------------GGAWFLNPI 286
Query: 244 SSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREAN 303
SL+ ++P A+ YL+ FS ++E+ + D+AK LK+Q M +PG R
Sbjct: 287 LSLS--LSDPIGAILYLIL----IIFFSFFYVEL-QLNPEDMAKNLKKQGMFIPGIRPGK 339
Query: 304 -LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGS--------GTGILLAVTIIYQYFE 354
+K L R IP G + +G + +L +F+GAIG GT +L+ V + ++
Sbjct: 340 MTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDTYK 399
Query: 355 TFEKE 359
E E
Sbjct: 400 QLESE 404
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 228 bits (584), Expect = 2e-72
Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 75/360 (20%)
Query: 9 NGAQKLLGIIIAIGEAVAYVL-SGMYGSVNQL-----GVGNAILIIVQLCFAGIIVICLD 62
+ L +++A+ +A+ VL G YG+ + G N +LI++QL + ++ L
Sbjct: 42 QQYTRYLTLVLALIQAIGIVLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLG 101
Query: 63 ELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDK 122
EL+ K YG+G+GISL I I +I W A+I LF LL +
Sbjct: 102 ELITK-YGIGNGISLIIFAGIVASIPW------------------AIINLFSLLSSAG-- 140
Query: 123 VRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS-----KNARGQQGSYPI 177
L Y + LLAT+ + L+V+Y Q R +P++ RGQ PI
Sbjct: 141 --GLLSILY-----LLLLLLATLAVILLVVYLQEARRRIPIQYAKRVVGGGRGQSSYLPI 193
Query: 178 KLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIA 237
KL Y +PII S+L++N I+Q + + PV G+A
Sbjct: 194 KLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLW--------------------PVSGLA 233
Query: 238 YYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMP 297
YY+ P + Y++F + FS + G + +D+A+ LK+ +P
Sbjct: 234 YYL------------PIGSPVYILFYIVLIIFFSYFYT-AIGFNPKDIAENLKKSGGFIP 280
Query: 298 GHRE-ANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFE 354
G R + +K LNR IP G + +G + VL D +GA+G GT +L+AV + +E
Sbjct: 281 GIRPGKSTEKYLNRVIPRLTFIGAIFLGLIAVLPDLLGALGGFGGTSLLIAVGVALDTYE 340
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 206 bits (526), Expect = 1e-62
Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 72/369 (19%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMY----GSVNQLGVGNAILIIVQLCFAGIIVICLDEL 64
+ L +++A+ +A+ VL G V G+ +LII+QL + ++ L E
Sbjct: 115 QQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQ 174
Query: 65 LQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVR 124
+ K G+G+GISL I I ++ F GA+
Sbjct: 175 ITK-RGIGNGISLIIFAGIVASLPSAIFGI-----------IGALPTG------------ 210
Query: 125 ALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS---KNARGQQGSYPIKLFY 181
A + L + +L T+ I +V+Y + R +P++ ++ RGQ P+KL Y
Sbjct: 211 ----ALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNY 266
Query: 182 TSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYIT 241
+P+I S+L+ I+Q + GG+AYY++
Sbjct: 267 AGVIPVIFASSLLLFPSTIAQF---------------------------LGNGGLAYYLS 299
Query: 242 APSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR- 300
+S++D + + Y+ + FS + E+ + ++A+ LK+ +PG R
Sbjct: 300 PLTSISDALS--PGSPVYIALYVVLIIFFSYFYTEIQF-NPEEIAENLKKSGGFIPGIRP 356
Query: 301 EANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFE 354
+ +K LNR IP G + +G + +L + +G G GT +L+ V + +E
Sbjct: 357 GKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPFYFGGTSLLIVVGVALDTYE 416
Query: 355 TFEKERASE 363
E E E
Sbjct: 417 QIEAELLME 425
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 30.5 bits (70), Expect = 1.7
Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 51/197 (25%)
Query: 14 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCF---AG-IIVICLDELLQKGY 69
+L + +IG +A L+ M G + + + + AG + ++ L E + +
Sbjct: 121 VLAFVQSIG--IAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITE-R 177
Query: 70 GLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREA 129
G+G+GISL I I A A+ F
Sbjct: 178 GIGNGISLIIFAGIV------------------AGLPSAIGQTF---------------E 204
Query: 130 FYRQNLPNVTNLLATVLIFLIVIYF-----QGFR---VVLPVRSKNAR--GQQGSY-PIK 178
R ++ L +++FL VI F Q R V R + G Q SY P+K
Sbjct: 205 LARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLK 264
Query: 179 LFYTSNMPIILQSALVS 195
+ +P+I S+++
Sbjct: 265 VNMAGVIPVIFASSILL 281
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 30.0 bits (68), Expect = 2.0
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 43/186 (23%)
Query: 44 AILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGA 103
A+ I++ L +IV+ L EL+ + GLG+G SL I NI N+ P + S
Sbjct: 141 ALEIVLALTSGSMIVLWLSELITE-KGLGNGSSLLIFFNIVSNL------PKLLQS---- 189
Query: 104 EFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIV---IYFQGFRVV 160
LL + N+ ++ LL L F+ + I+ Q
Sbjct: 190 -----------LLFS------------LSANITILSILLLLFLFFITLIGIIFLQEAIRK 226
Query: 161 LPVRS-----KNARGQQGSY-PIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFV 214
+P+ S K++R SY P++L MPII SAL+ +++ ++ ++
Sbjct: 227 IPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLS 286
Query: 215 NLLGKW 220
L
Sbjct: 287 LFLQLA 292
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 29.8 bits (68), Expect = 2.6
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 107 GAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRV 159
G V LF L I DK+ LR + Y N LL LI ++ G+ V
Sbjct: 6 GLVAVLFRLGI---DKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLV 55
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
type. This family is a subset of the members of the
zinc metallopeptidase family M1 (pfam01433), with a
single member characterized in Streptomyces lividans 66
and designated aminopeptidase N. The spectrum of
activity may differ somewhat from the aminopeptidase N
clade of E. coli and most other Proteobacteria, well
separated phylogenetically within the M1 family. The M1
family also includes leukotriene A-4
hydrolase/aminopeptidase (with a bifunctional active
site).
Length = 831
Score = 29.0 bits (65), Expect = 4.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 178 KLFYTSNMPIILQSALVSNLYFISQ-LMYRRYSGNFFVNLLGKWKE 222
KL T +P Q A++ + Q L+ Y+ +F NL WK
Sbjct: 725 KLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFANLADIWKR 770
>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990). This
family of proteins are functionally uncharacterized.
Length = 158
Score = 28.0 bits (63), Expect = 4.9
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 97 INSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQG 156
+ SGR FE A AL + R VR + P + L+ G
Sbjct: 25 LGSGREEVFERAAQALLSWRMFRLAGVRVIA--------PATPPEVGRT--VLLRARLGG 74
Query: 157 FRVVLPVR 164
V+ P R
Sbjct: 75 LWVLAPCR 82
>gnl|CDD|183230 PRK11613, folP, dihydropteroate synthase; Provisional.
Length = 282
Score = 28.6 bits (64), Expect = 5.5
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 243 PSSLADMAA-NPF-HALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR 300
P S +D N A+ + M++A A T I+V G S R PG
Sbjct: 25 PDSFSDGGTHNSLIDAVKHANLMINAGA----TIIDVGGESTR-------------PGAA 67
Query: 301 EANLQKELNRYIPTAAA 317
E ++++EL+R IP A
Sbjct: 68 EVSVEEELDRVIPVVEA 84
>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial
oligomycin sensitivity protein) [Energy production and
conversion].
Length = 178
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 112 LFHLLITRNDKVRALREAFYRQNLPNVTNLLATVL 146
L ++ DK L F + P + N L +
Sbjct: 49 LSSPAVSAEDKKELLISIFKKIGDPLLQNFLRLLA 83
>gnl|CDD|237166 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 28.7 bits (65), Expect = 6.2
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 256 ALFYLVF-MLSACALFSKT-WIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 313
AL+YLV L+A ALF +E R A + E + E+ IP
Sbjct: 333 ALYYLVHSTLAAAALFLLADLVE----RQRGAAADRLAVTPELYDLDEEEEE-EVGVAIP 387
Query: 314 TAAAFGGMCIGALTVL 329
A G+ +
Sbjct: 388 ATMALLGLLFFICALA 403
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 28.3 bits (63), Expect = 6.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 269 LFSKTWIEVSGSSARDVAKQ 288
LFS+ W+EVSG D+ +Q
Sbjct: 43 LFSRDWVEVSGYVRYDIGQQ 62
>gnl|CDD|239508 cd03415, CbiX_CbiC, Archaeal sirohydrochlorin cobalt chelatase
(CbiX) single domain. Proteins in this subgroup contain
a single CbiX domain N-terminal to a precorrin-8X
methylmutase (CbiC) domain. CbiX is a cobaltochelatase,
responsible for the chelation of Co2+ into
sirohydrochlorin, while CbiC catalyzes the conversion of
cobalt-precorrin 8 to cobyrinic acid by methyl
rearrangement. Both CbiX and CbiC are involved in
vitamin B12 biosynthesis.
Length = 125
Score = 27.5 bits (61), Expect = 6.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 210 GNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLV 261
G V+ KW S+Y G + I Y+T P + + + ALFY V
Sbjct: 80 GELGVSRFYKWVMSKYGGKE------ILVYVTEPLADSPLVKL---ALFYRV 122
>gnl|CDD|220467 pfam09911, DUF2140, Uncharacterized protein conserved in bacteria
(DUF2140). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 187
Score = 27.9 bits (63), Expect = 6.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 141 LLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPI 177
LLA L + V++F+ F V PV +A+ +
Sbjct: 10 LLALNLASIAVVFFRLFAPVEPVTKPSAKESKSDAVF 46
>gnl|CDD|224266 COG1347, NqrD, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrD [Energy production and conversion].
Length = 208
Score = 27.8 bits (62), Expect = 7.1
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 19 IAIGEAVAYV--LSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQK-GYGLGSGI 75
I +G AV V S + S+ + + N++ IIVQ+ +VI +D+ L+ Y L +
Sbjct: 42 IVMGIAVTLVTGFSSFFVSLIRNYIPNSVRIIVQMAIIASLVIVVDQFLKAYAYELSKQL 101
Query: 76 SLFIATNICENII 88
S+F+ I I+
Sbjct: 102 SVFVGLIITNCIV 114
>gnl|CDD|211958 TIGR04235, seadorna_VP4, seadornavirus VP4 protein. This protein
family occurs in the seadornavirus virus group, with
designation VP4 in Banna virus, Kadipiro virus, and Liao
ning virus. Although this family has been suggested to
resemble methyltransferases, members show apparent
N-terminal sequence similarity to the outer capsid
protein VP5 of the orbivirus group, such as bluetongue
virus, which also belong to the Reoviridae.
Length = 618
Score = 28.3 bits (63), Expect = 7.3
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 1 MMTVFPPRNGAQKLLGIIIAI-GEAVAYVLSGMYGSVNQLGVGNAIL 46
+ V P G+ LG+++ + G+A++Y + YG+++ G G IL
Sbjct: 278 QLYVIHPVQGS---LGLVVQMMGDALSYNVFAQYGTLDSSGFGKTIL 321
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.417
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,473,002
Number of extensions: 1956892
Number of successful extensions: 2913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2865
Number of HSP's successfully gapped: 74
Length of query: 369
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 271
Effective length of database: 6,590,910
Effective search space: 1786136610
Effective search space used: 1786136610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)