RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017579
(369 letters)
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 359 bits (923), Expect = e-122
Identities = 114/359 (31%), Positives = 196/359 (54%), Gaps = 16/359 (4%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGS-VNQLGVGNAILIIVQLCFAGIIVICLDELLQK 67
Q++ + + EA ++L G +G + A+L+I+QL GI++I LDEL+ K
Sbjct: 111 QALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK 170
Query: 68 GYGLGSGISLFIATNICENIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITRNDKVRAL 126
+G+GSGISLFIA + + I+ ++ +P T N + A++ I K
Sbjct: 171 -WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229
Query: 127 REAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMP 186
+ + P++ +++AT+++F IV+YF+ RV +P+ + +GSYPI+ Y SN+P
Sbjct: 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIP 288
Query: 187 IILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSL 246
IIL AL +N+ ++++ LG++ P+ G Y+ P ++
Sbjct: 289 IILTFALYANIQLWARVL-----DRLGHPWLGRF-----DPTTGSPISGFVLYVIPPRNI 338
Query: 247 ADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANL 304
+ NP A+ YL+ + LF W+E++G AR +A+QL+ + +PG R L
Sbjct: 339 FSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTL 398
Query: 305 QKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
+K L RYIP +G + + + VLADF+GA+G+GTGILL V I+Y+++E +E+ +E
Sbjct: 399 EKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 353 bits (908), Expect = e-120
Identities = 250/362 (69%), Positives = 301/362 (83%), Gaps = 2/362 (0%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
NGAQKL G+II IG+++ YV++GMYG +++G G +LI +QL AG+IV+ LDELLQKG
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKG 172
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YGLGSGISLFIATNICE I+WKAFSPTT+N+GRG EFEGA+IALFHLL TR DKVRALRE
Sbjct: 173 YGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALRE 232
Query: 129 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 188
AFYRQNLPN+ NL+AT+ +F +VIYFQGFRV LP++S RGQ +YPIKLFYTSN+PII
Sbjct: 233 AFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPII 292
Query: 189 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVPVGGIAYYITAPSSLA 247
LQSALVSNLY ISQ++ R+SGN V+LLG W ++ G + PVGG+ +Y++ P S
Sbjct: 293 LQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFG 352
Query: 248 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKE 307
+ +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRE ++ E
Sbjct: 353 SVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHE 412
Query: 308 LNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 367
LNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE++ E+G
Sbjct: 413 LNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSM 471
Query: 368 GF 369
G
Sbjct: 472 GA 473
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 346 bits (890), Expect = e-117
Identities = 119/357 (33%), Positives = 188/357 (52%), Gaps = 41/357 (11%)
Query: 9 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 68
G QKLL II+ EAV +V +G +G L A L+I+Q+ F II+I LDE++ K
Sbjct: 108 QGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYLDEIVSK- 163
Query: 69 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 128
YG+GSGI LFIA + + I A P EG + + LI
Sbjct: 164 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLIQG--------- 203
Query: 129 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 188
N+ + ++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+P+I
Sbjct: 204 ---VPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVI 260
Query: 189 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 248
L +AL +N+ +Y + +LG ++ V GIAYY++ P L+
Sbjct: 261 LAAALFANIQLWGLALY-----RMGIPILGHYEGGR-------AVDGIAYYLSTPYGLSS 308
Query: 249 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQK 306
+ ++P HA+ Y++ M+ C +F W+E +G + +AK++ M + G R E ++
Sbjct: 309 VISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEH 368
Query: 307 ELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 363
L RYIP +G L +A+F+GA+G GTG+LL V+I+Y+ +E +ER SE
Sbjct: 369 RLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSE 425
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 310 bits (796), Expect = e-102
Identities = 103/359 (28%), Positives = 166/359 (46%), Gaps = 11/359 (3%)
Query: 8 RNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQK 67
K+ I+ + ++ +G +G L V LI QL AGI L E++ K
Sbjct: 116 FQSLTKVFAIVQYVILTNIFIFAGYFGD--DLSVVQIGLINFQLVGAGIFTTLLAEVIDK 173
Query: 68 GYGLGSGISLFIATNICENIIWKAFSPTTINSGRG--AEFEGAVIALFHLLITRNDK-VR 124
G+G SG + I N++ F + I G E +GA+I L L +++ +
Sbjct: 174 GFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIG 233
Query: 125 ALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSN 184
+ AF R LPN+T + + I +IV Y Q RV LP+RS ARG YPIKL YT
Sbjct: 234 GIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGC 293
Query: 185 MPIILQSALVSNL----YFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYI 240
+ ++ ++ + + + QL+ + + ++G + + VP ++
Sbjct: 294 LSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHY--ENANNLLAVPTFPLSLLA 351
Query: 241 TAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR 300
S + P + Y F+L F+ W +SGSSARDVA + K+Q + + G R
Sbjct: 352 PPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRR 411
Query: 301 EANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 359
E N+ KELN+ IP AA G + +TV+ + +G G GI++ + + E E
Sbjct: 412 EQNVAKELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIE 470
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 1e-07
Identities = 66/381 (17%), Positives = 121/381 (31%), Gaps = 137/381 (35%)
Query: 46 LI-IVQLCFAGIIVIC---------LDELLQKGYGLGSGI--SLFIATNICENIIWKAFS 93
LI ++QL A +V L L+ G G+ ++ IA W++F
Sbjct: 240 LIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS----WESFF 293
Query: 94 PTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP----------------- 136
+ A+ LF + VR EA+ +LP
Sbjct: 294 VSVRK---------AITVLFFI------GVRCY-EAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 137 --NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALV 194
+++NL + + LP + I L N ++ +V
Sbjct: 338 MLSISNLTQEQVQDYV----NKTNSHLPAGKQVE--------ISLV---NGA---KNLVV 379
Query: 195 S----NLY-FISQLMYRRY---SGNFFVNLLGKWKESEYS------GGQYVPVGGIAYYI 240
S +LY L R+ SG L + + +S +++P +
Sbjct: 380 SGPPQSLYGLNLTL--RKAKAPSG------LDQSR-IPFSERKLKFSNRFLP-------V 423
Query: 241 TAP--SS-LADMAANPFHALFYLVFMLSACAL----FSKTWIEVSGSSAR----DVAKQL 289
+P S L + L +A + + T+ GS R +++++
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-TF---DGSDLRVLSGSISERI 479
Query: 290 KEQQMVMPGHREANLQKELNRYIPTAAAFG--GMC-IGALT-VLADFMGAIGSGTGILLA 345
+ + +P E Q + + FG G +G LT D G+G +++A
Sbjct: 480 VDCIIRLPVKWETTTQFKATHIL----DFGPGGASGLGVLTHRNKD-----GTGVRVIVA 530
Query: 346 VTIIYQYFETFEKERASELGF 366
T + + GF
Sbjct: 531 --------GTLDINPDDDYGF 543
Score = 52.0 bits (124), Expect = 2e-07
Identities = 62/342 (18%), Positives = 104/342 (30%), Gaps = 112/342 (32%)
Query: 94 PTTINSGRGAEFEGAVIALFHLLITRNDKVRA--LREAFYRQNLPNVTNLLA-----TVL 146
P T++ G E LL+ A L+E F + LP T A T
Sbjct: 8 PLTLSHG---SLE------HVLLVPTASFFIASQLQEQFN-KILPEPTEGFAADDEPTTP 57
Query: 147 IFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYR 206
L V F G+ V S + G + +L L F + +
Sbjct: 58 AEL-VGKFLGY-----VSSLVEPSKVGQFDQ----------VLNLCLT---EFENCYL-- 96
Query: 207 RYSGN----FFVNLLGKWKESEYSGGQYVPVGGIAYYITA------------PSSLADMA 250
GN LL + ++ + + I YITA S+L A
Sbjct: 97 --EGNDIHALAAKLLQE-NDTTLVKTKEL----IKNYITARIMAKRPFDKKSNSALFR-A 148
Query: 251 ANPFHALFYLVF----MLSAC-----ALFS------KTWIEVSGSSARDVAKQLKEQQMV 295
+A +F L+ I+ S + ++ + + + V
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 296 MPGHREANLQKELNR--------YIPTAA-AFGGMCIGALTVLADFM------------- 333
+ N+ + L Y+ + + IG + LA ++
Sbjct: 209 FT--QGLNILEWLENPSNTPDKDYLLSIPISCPL--IG-VIQLAHYVVTAKLLGFTPGEL 263
Query: 334 -----GAIGSGTGILLAVTI-IYQYFETFEK--ERASELGFF 367
GA G G++ AV I +E+F +A + FF
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Score = 38.1 bits (88), Expect = 0.004
Identities = 41/272 (15%), Positives = 77/272 (28%), Gaps = 96/272 (35%)
Query: 126 LREAF--YRQNLPNVTNLLATVLIFLI-------VIYFQGFRVVLPVRSKNARGQQG--- 173
LR+ + Y + ++ A L LI ++ QG ++ + + + +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 174 SYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVP 232
S PI S P+I L + L + G L G +G Q +
Sbjct: 233 SIPI-----S-CPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKGA------TGHSQGLV 278
Query: 233 VGGIAYYITAPSSLADMAANPFHALFYLVFMLSAC-ALFSKTWIE--------------- 276
A I S + A+ L F+ C + T +
Sbjct: 279 T---AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 277 -----VSGSSARDVAKQLKE-------------------QQMVMPGHREA------NLQK 306
+S + V + + + +V+ G ++ L+K
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 307 E--------------------LNRYIPTAAAF 318
NR++P A+ F
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Score = 35.8 bits (82), Expect = 0.024
Identities = 44/292 (15%), Positives = 74/292 (25%), Gaps = 115/292 (39%)
Query: 62 DELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRND 121
D + YG F +I N +P + G E +G I + +
Sbjct: 1650 DNHFKDTYG-------FSILDIVIN------NPVNLTIHFGGE-KGKRIRENYSAMIFET 1695
Query: 122 KVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFY 181
V + + + N +T F R ++G L
Sbjct: 1696 IVDGKLKT---EKIFKEINEHSTSYTF--------------------RSEKG----LLSA 1728
Query: 182 TSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNL--------LGKWKESEYSGGQYVPV 233
T Q AL + + + + LG EY+
Sbjct: 1729 TQF----TQPALTL----MEKAAFEDLKSKGLIPADATFAGHSLG-----EYA------- 1768
Query: 234 GGIAYYITAPSSLADMAANPFHALFYLVF------------------MLSACALF-SKTW 274
A +SLAD +L +VF A+ +
Sbjct: 1769 --------ALASLAD--VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 275 IEVSGSSARDVAKQLKE---------------QQMVMPGHREA--NLQKELN 309
S + + V +++ + QQ V G A + LN
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 62/357 (17%), Positives = 104/357 (29%), Gaps = 99/357 (27%)
Query: 4 VFPPRN--GAQKLLGIIIAIGEA--VAYV-LSGMYGSVNQLGVGNAILIIVQLCFAGIIV 58
VF N Q L + A+ E V + G+ LG G + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV------LGSGKTWV---------ALD 169
Query: 59 ICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLL-- 116
+CL +Q I W +N E + L LL
Sbjct: 170 VCLSYKVQCKMDFK--------------IFW-------LNLKNCNSPETVLEMLQKLLYQ 208
Query: 117 ITRNDKVRALREAFYRQNLPNVTNLLATVLIF------LIVI-------YFQGF----RV 159
I N R+ + + + ++ L +L L+V+ + F ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 160 VLPVRSK---NARGQQGSYPIKL------FYTSNMPIILQSALVSNLYFISQLMYRRYSG 210
+L R K + + I L + +L L L +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTT 325
Query: 211 N-FFVNLLGK--------WKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYL- 260
N ++++ + W ++ V SSL + + +F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKH-------VNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 261 -VFMLSA---CALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 313
VF SA L S W +V S V +L + +V E KE IP
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-----EKQ-PKESTISIP 429
Score = 39.5 bits (91), Expect = 0.002
Identities = 35/316 (11%), Positives = 92/316 (29%), Gaps = 69/316 (21%)
Query: 39 LGVGNAI----LIIVQLCFAG--IIVICLDELLQKGYGLGSGISLFIATNICENIIWKAF 92
+ +A+ + L ++ ++E+L+ Y F+ + I +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSM 107
Query: 93 SPTTINSGRGAEF-EGAVIALFHLLITRNDKVRALREAFYR-QNLPNV----------TN 140
R + + V A ++ ++R LR+A + NV T
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 141 LLATVLIFLIVIYFQGFRVV-LPVRSKNARG-----QQ-------GSYPIKLFYTSNMPI 187
+ V + V F++ L +++ N+ Q ++ + ++SN+ +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 188 ILQSALVSNLYFISQLMYRRYSGNFFVNLL------GKWKESEYSGGQYVPVGGIAYYIT 241
+ S + Y LL + ++ + + T
Sbjct: 226 RIHSIQAELRRLLKSKPYEN-------CLLVLLNVQNAKAWNAFNLSCKILL------TT 272
Query: 242 APSSLADMAANPFHALFYLVFMLS------ACALFSKTWIEVSGSSARDVAKQLKEQQMV 295
+ D + L +L K +++ +++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLS 331
Query: 296 MPGHREANLQKELNRY 311
+ +++ L +
Sbjct: 332 IIA---ESIRDGLATW 344
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.048
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 9/38 (23%)
Query: 291 EQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTV 328
E+Q + LQ L Y +A + I A T+
Sbjct: 18 EKQAL------KKLQASLKLYADDSAP--ALAIKA-TM 46
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 28.6 bits (65), Expect = 3.7
Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 52/194 (26%)
Query: 17 IIIAIGEAVAYVL-----SGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGL 71
+++AI +++ GM G V G +V L + ++ L E + + G+
Sbjct: 118 LVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE-RGI 176
Query: 72 GSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFY 131
G+GIS+ I I A A+
Sbjct: 177 GNGISIIIFAGIV------------------AGLPPAIAHTIEQA--------------- 203
Query: 132 RQNLPNVTNLLATVLIFLIVIYF-----QGFRVVLPV------RSKNARGQQGSY-PIKL 179
RQ + LL ++ V +F +G R + V + + Q ++ P+K+
Sbjct: 204 RQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRI-VVNYAKRQQGRRVYAAQSTHLPLKV 262
Query: 180 FYTSNMPIILQSAL 193
+P I S++
Sbjct: 263 NMAGVIPAIFASSI 276
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase
protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A
{Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Length = 119
Score = 27.4 bits (61), Expect = 4.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 98 NSGRGAEFEGAVIALFHLLITRNDKVRAL 126
G EG +ALF+ + V A+
Sbjct: 18 FIGATVLIEGERVALFY---IPDSGVYAV 43
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 27.8 bits (62), Expect = 4.7
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 100 GRGAEFEGAVIAL------FHLLITRNDKVRALREAFYRQNLPNVT 139
G GA F G + + L+ KV + A L
Sbjct: 88 GTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGAR 133
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta;
HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}
Length = 764
Score = 27.4 bits (61), Expect = 8.4
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 212 FFVNLLG---KWKESEYSGGQYV 231
FFVNL+ W S G +V
Sbjct: 677 FFVNLVDMNIAWTASGADGESWV 699
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 27.5 bits (62), Expect = 8.5
Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 50/195 (25%)
Query: 14 LLGIIIAIGEAVA---YVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYG 70
+ + ++G A V V G+ ++ ++ L + ++ + + + + G
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITE-KG 180
Query: 71 LGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAF 130
+G+G SL I I A F AVI + +
Sbjct: 181 IGNGASLIIFAGIV------------------ANFPNAVIQFYEKV-------------- 208
Query: 131 YRQNLPNVTNLLATVLIFLIVIYF-----QGFRVVLPV------RSKNARGQQGSY-PIK 178
+ LL + + + +I + R + P+ + + +Y PIK
Sbjct: 209 -KTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRI-PIQYPGRQVGRQLYAGRKTYLPIK 266
Query: 179 LFYTSNMPIILQSAL 193
+ +PII AL
Sbjct: 267 INPAGVIPIIFAQAL 281
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini
hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A
{Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A*
3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A*
1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
Length = 748
Score = 27.4 bits (61), Expect = 9.1
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 212 FFVNLLG---KWKESEYSGGQYV 231
FFVNLL +WK + +
Sbjct: 664 FFVNLLDMGTEWKPTAADADVFE 686
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.417
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,732,984
Number of extensions: 351989
Number of successful extensions: 882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 25
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)