RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017579
         (369 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  230 bits (589), Expect = 6e-73
 Identities = 117/356 (32%), Positives = 187/356 (52%), Gaps = 41/356 (11%)

Query: 8   RNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQK 67
             G QKLL II+   EAV +V +G +G +  L    A L+I+Q+ F  II+I LDE++ K
Sbjct: 106 FQGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK 162

Query: 68  GYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALR 127
            YG+GSGI LFIA  + + I   A  P           EG +    + LI          
Sbjct: 163 -YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLIQG-------- 202

Query: 128 EAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPI 187
                 N+  +  ++ T+++FL+V+Y +  RV +P+     +G  G YPIK  Y SN+P+
Sbjct: 203 ----VPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPV 258

Query: 188 ILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLA 247
           IL +AL +N+      +Y        + +LG ++           V GIAYY++ P  L+
Sbjct: 259 ILAAALFANIQLWGLALY-----RMGIPILGHYEGGR-------AVDGIAYYLSTPYGLS 306

Query: 248 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQ 305
            + ++P HA+ Y++ M+  C +F   W+E +G   + +AK++    M + G R  E  ++
Sbjct: 307 SVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIE 366

Query: 306 KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA 361
             L RYIP         +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +ER 
Sbjct: 367 HRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT 422


>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
           (Stoichactis helianthus) [TaxId: 6123]}
          Length = 175

 Score = 26.4 bits (58), Expect = 3.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 233 VGGIAYYITAPSSLADMAANPFHALFY 259
           V   AYY+++ ++L  M + PF   +Y
Sbjct: 85  VAAFAYYMSSGNTLGVMFSVPFDYNWY 111


>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 41

 Score = 24.2 bits (53), Expect = 4.4
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 102 GAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLAT 144
           G+E+E  +  +  +   R   V ALR ++   N       L T
Sbjct: 1   GSEYETMLTEIMSMGYERERVVAALRASYN--NPHRAVEYLLT 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,356,981
Number of extensions: 61618
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 7
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)