BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017580
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 34/198 (17%)
Query: 85 REGFHVVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSD 144
R G V++ R + + +R ++E ++DL SV +F D +
Sbjct: 38 RRGATVIMAVRDTR-----KGEAAARTMAGQVEVRELDLQDLSSVRRFADGV-------- 84
Query: 145 MHSSIQLLINNAGILATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVP---SRI 201
S +LINNAGI+A LT +G++ + TN++G F N +P R+
Sbjct: 85 --SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHF--------ALTNLLLPRLTDRV 134
Query: 202 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 261
V V+S H + ++N E + RS+ Y Y SKL L+F+ EL R L
Sbjct: 135 VTVSSMAH---WPGRINLEDLN----WRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAG 187
Query: 262 SRHVSVIAADPGVVKTNI 279
S + +AA PG TN+
Sbjct: 188 S-PLRALAAHPGYSHTNL 204
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 32/222 (14%)
Query: 85 REGFHVVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSD 144
EG V++ GR S + + + + + +++ FQ D S K D+ ++
Sbjct: 28 EEGAKVMITGRHSDVGEKAAKSVGTPD---QIQFFQHDSSDEDGWTKLFDATEKAF---- 80
Query: 145 MHSSIQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIV 202
+ L+NNAGI S T + ++++ N G FF N + + I+
Sbjct: 81 --GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASII 138
Query: 203 NVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKS 262
N++S E G P Y SK + I S + L K
Sbjct: 139 NMSSI------------EGFVGD--------PSLGAYNASKGAVRIMSKSAALDCAL-KD 177
Query: 263 RHVSVIAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSP 304
V V PG +KT ++ ++P M+ +G + P
Sbjct: 178 YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEP 219
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 32/222 (14%)
Query: 85 REGFHVVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSD 144
EG V++ R S + + + + + +++ FQ D S K D+ ++
Sbjct: 28 EEGAKVMITDRHSDVGEKAAKSVGTPD---QIQFFQHDSSDEDGWTKLFDATEKAF---- 80
Query: 145 MHSSIQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIV 202
+ L+NNAGI S T + ++++ N G FF N + + I+
Sbjct: 81 --GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASII 138
Query: 203 NVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKS 262
N++S E G P Y SK + I S + L K
Sbjct: 139 NMSSI------------EGFVGD--------PSLGAYNASKGAVRIMSKSAALDCAL-KD 177
Query: 263 RHVSVIAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSP 304
V V PG +KT ++ ++P M+ +G + P
Sbjct: 178 YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEP 219
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 116/307 (37%), Gaps = 65/307 (21%)
Query: 35 HFQLLFQNLFP--RKSNPY---KRCVPPITGIKRPVCIVXXXXXXXXXXXXXXXXREGFH 89
H +L F NL +K N Y + V +TG R + + H
Sbjct: 21 HMKLEFMNLLSENKKENYYYCGENKVALVTGAGRGI----------GREIAKMLAKSVSH 70
Query: 90 VVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSI 149
V+ + R+ + +I S ++ + D+S + + + + + L + H ++
Sbjct: 71 VICISRTQKSCDSVVDEIKSFGYES--SGYAGDVSKKEEI---SEVINKILTE---HKNV 122
Query: 150 QLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSF 207
+L+NNAGI + R+ + ++ ++ TN F+ N+ RI+N++S
Sbjct: 123 DILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSI 181
Query: 208 THRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSV 267
Q N Y SK ++ F+ L + L SR+++V
Sbjct: 182 VGLTGNVGQAN--------------------YSSSKAGVIGFTKSLAKELA---SRNITV 218
Query: 268 IAADPGV------------VKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKG-INS---V 311
A PG +K NI+ +P+ V L L S + G IN V
Sbjct: 219 NAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFV 278
Query: 312 LDAALAP 318
+D L+P
Sbjct: 279 IDGGLSP 285
>pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
pdb|3ICC|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
Length = 255
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 30/194 (15%)
Query: 94 GRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLI 153
G ET+ +I S A + +L S V SL L + + +LI
Sbjct: 39 GNRKEEAEETVYEIQSNGGSAF--SIGANLESLHGVEALYSSLDNELQNRTGSTKFDILI 96
Query: 154 NNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRN 211
NNAGI + T + +D+ +S N FF ++ SRI+N++S R
Sbjct: 97 NNAGIGPGAFIEETTEQFFDRXVSVNAKAPFFIIQQALSRLRDN---SRIINISSAATR- 152
Query: 212 VFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAAD 271
P Y +K + ++ L + LG +R ++V A
Sbjct: 153 -------------------ISLPDFIAYSXTKGAINTXTFTLAKQLG---ARGITVNAIL 190
Query: 272 PGVVKTNIMREVPS 285
PG VKT+ E+ S
Sbjct: 191 PGFVKTDXNAELLS 204
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 99 LLSETMADITS-----RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLI 153
L S T AD+ R + A + D+S V + + + + I L+
Sbjct: 38 LSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER------YGHIDCLV 91
Query: 154 NNAGI--LATSSRLTPEGYDQMMSTNYIGAFF 183
NNAG+ S LT E +D M+TN G FF
Sbjct: 92 NNAGVGRFGALSDLTEEDFDYTMNTNLKGTFF 123
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 28/197 (14%)
Query: 85 REGFHVVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSD 144
++G VV R+ + E A+ S L ++ DLS+ + +L +++
Sbjct: 54 QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS------ 107
Query: 145 MHSSIQLLINNAGILATSSRL--TPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPV-PSRI 201
HS + + INNAG+ + L + G+ M + N + V I
Sbjct: 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHI 167
Query: 202 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 261
+N+ S + V V + Y +K + + L + L +
Sbjct: 168 ININSMSGHRVLPLSVTH------------------FYSATKYAVTALTEGLRQEL-REA 208
Query: 262 SRHVSVIAADPGVVKTN 278
H+ PGVV+T
Sbjct: 209 QTHIRATCISPGVVETQ 225
>pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AG3|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
Length = 269
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 32/166 (19%)
Query: 121 VDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNY 178
+D+SS +SV + +QQ L +++NNAGI + R+ + + +++TN
Sbjct: 83 LDVSSDESVAATLEHIQQHL------GQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTN- 135
Query: 179 IGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARI 238
+ + + RI+N+ S Q N
Sbjct: 136 LNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTN-------------------- 175
Query: 239 YEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVP 284
Y +K L F+ L R +G SR ++V A PG + T++ RE+P
Sbjct: 176 YAAAKAGLEGFTRALAREVG---SRAITVNAVAPGFIDTDMTRELP 218
>pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|B Chain B, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|C Chain C, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|D Chain D, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
Length = 257
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 85 REGFHVVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSD 144
+EG VV+ GR+ L E +I E F + + Q ++ D +Q+ + D
Sbjct: 28 KEGARVVITGRTKEKLEEAKLEI---------EQFPGQILTVQXDVRNTDDIQKXIEQID 78
Query: 145 MH-SSIQLLINNAG--ILATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRI 201
I +LINNA + + L+ G++ +++ G F+ + I
Sbjct: 79 EKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNI 138
Query: 202 VNVTS 206
+N +
Sbjct: 139 INXVA 143
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 149 IQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTS 206
+ LL+NNA ++ +T E +D+ S N F N VP IVNV+S
Sbjct: 77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136
Query: 207 FTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVS 266
F P Y +K + + + + LG K R S
Sbjct: 137 MVAHVTF--------------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNS 176
Query: 267 VIAADPGVVKTNIMREV---PSF 286
V +P VV T++ ++V P F
Sbjct: 177 V---NPTVVLTDMGKKVSADPEF 196
>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE1|A Chain A, Tropinone Reductase-Ii
Length = 260
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 110 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGIL--ATSSRLTP 167
R+K ++EA DLSS + +++ + H + +L+NNAGI+ + T
Sbjct: 54 RSKGFKVEASVCDLSSRSERQELMNTVA-----NHFHGKLNILVNNAGIVIYKEAKDYTV 108
Query: 168 EGYDQMMSTNYIGAF 182
E Y +MS N+ A+
Sbjct: 109 EDYSLIMSINFEAAY 123
>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPE|B Chain B, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPF|A Chain A, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
pdb|1IPF|B Chain B, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
Length = 259
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 110 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDS---DMHSSIQLLINNAGIL--ATSSR 164
R+K ++EA DLSS S +Q L+++ H + +L+NNAGI+ +
Sbjct: 53 RSKGFKVEASVCDLSS--------RSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKD 104
Query: 165 LTPEGYDQMMSTNYIGAF 182
T E Y +MS N+ A+
Sbjct: 105 YTVEDYSLIMSINFEAAY 122
>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
Length = 283
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 89/203 (43%), Gaps = 38/203 (18%)
Query: 85 REGFHVVL-VGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLK-FKDSLQQWLLD 142
R G V++ S+ E +A I DA + ++ + +++ F+++++
Sbjct: 51 RRGCKVIVNYANSTESAEEVVAAIKKNGSDA--ACVKANVGVVEDIVRMFEEAVK----- 103
Query: 143 SDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSR 200
+ + ++ +N+G+++ +TPE +D++ + N G FF
Sbjct: 104 --IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF----------------- 144
Query: 201 IVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLD 260
V ++ H + + +ITG+ +K P +Y SK + F+ + ++ D
Sbjct: 145 -VAREAYKHLEIGGRLILMGSITGQ----AKAVPKHAVYSGSKGAIETFARCMAIDM-AD 198
Query: 261 KSRHVSVIAADPGVVKTNIMREV 283
K V+V+A PG +KT++ V
Sbjct: 199 KKITVNVVA--PGGIKTDMYHAV 219
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 89/203 (43%), Gaps = 38/203 (18%)
Query: 85 REGFHVVL-VGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLK-FKDSLQQWLLD 142
R G V++ S+ E +A I DA + ++ + +++ F+++++
Sbjct: 51 RRGCKVIVNYANSTESAEEVVAAIKKNGSDA--ACVKANVGVVEDIVRMFEEAVK----- 103
Query: 143 SDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSR 200
+ + ++ +N+G+++ +TPE +D++ + N G FF
Sbjct: 104 --IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF----------------- 144
Query: 201 IVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLD 260
V ++ H + + +ITG+ +K P +Y SK + F+ + ++ D
Sbjct: 145 -VAREAYKHLEIGGRLILMGSITGQ----AKAVPKHAVYSGSKGAIETFARCMAIDM-AD 198
Query: 261 KSRHVSVIAADPGVVKTNIMREV 283
K V+V+A PG +KT++ V
Sbjct: 199 KKITVNVVA--PGGIKTDMYHAV 219
>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2
Length = 276
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 51/231 (22%)
Query: 120 QVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSSRLTP--EGYDQMMSTN 177
Q+D+ QS+ +D L++ + + +L+NNAGI + TP + M TN
Sbjct: 60 QLDIDDLQSIRALRDFLRK------EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN 113
Query: 178 YIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNA-------QVNNETIT------- 223
+ G R+VNV+S + + +ETIT
Sbjct: 114 FFGTRDVXTELLPLIKPQ---GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGL 170
Query: 224 -GKFFLRSK-------CYPCARIYEYSKLCLLIFSYELHRNLGLD-KSRHVSVIAADPGV 274
KF +K +P + Y +K+ + + S R L K + + A PG
Sbjct: 171 MNKFVEDTKKGVHQKEGWPSS-AYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGW 229
Query: 275 VKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVY 325
V+T++ + +SPE+G + + AL PP+ G +
Sbjct: 230 VRTDMAGPKAT----------------KSPEEGAETPVYLALLPPDAEGPH 264
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 44/198 (22%)
Query: 134 DSLQQWLLDSDMHSS-IQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXX 190
D++ + + H +++L++NAG+ A + R+T E ++++++ N GAF
Sbjct: 66 DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF-------- 117
Query: 191 XXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIF 249
R+ S + RN F + +++G + + ++ Y SK ++
Sbjct: 118 ---------RVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQAN-----YAASKAGVIGM 163
Query: 250 SYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGIN 309
+ + R L +V+ PG + T++ R + + A + P K +
Sbjct: 164 ARSIAREL---SKANVTANVVAPGYIDTDMTRALDERIQQGALQFI--------PAKRVG 212
Query: 310 SVLDAALAPPETSGVYFF 327
+ P E +GV F
Sbjct: 213 T-------PAEVAGVVSF 223
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 144 DMHSSIQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAF 182
D + +I +L+NNAGIL S +++ + +D + + IG F
Sbjct: 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTF 431
>pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
pdb|4HP8|B Chain B, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
Length = 247
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 110 RNKDARLEAFQVDLSSFQSVL-KFKDSLQQWLLDSDMHSSIQLLINNAGIL--ATSSRLT 166
R D L+ D + ++L F D L DS + +L+NNAGI+ A S +
Sbjct: 42 RAPDETLDIIAKDGGNASALLIDFADPLAA--KDSFTDAGFDILVNNAGIIRRADSVEFS 99
Query: 167 PEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSF 207
+D++M N FF ++VN+ S
Sbjct: 100 ELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL 140
>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp
pdb|3BHI|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Nadp
pdb|3BHJ|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Glutathione
pdb|3BHM|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With S-Hydroxymethylglutathione
Length = 276
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 51/231 (22%)
Query: 120 QVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSSRLTP--EGYDQMMSTN 177
Q+D+ QS+ +D L++ + + +L+NNAGI + TP + M TN
Sbjct: 60 QLDIDDLQSIRALRDFLRK------EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN 113
Query: 178 YIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNA-------QVNNETIT------- 223
+ G R+VNV+S + + +ETIT
Sbjct: 114 FFGTRDVCTELLPLIKPQ---GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGL 170
Query: 224 -GKFFLRSK-------CYPCARIYEYSKLCLLIFSYELHRNLGLD-KSRHVSVIAADPGV 274
KF +K +P + Y +K+ + + S R L K + + A PG
Sbjct: 171 MNKFVEDTKKGVHQKEGWPSS-AYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGW 229
Query: 275 VKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVY 325
V+T++ + +SPE+G + + AL PP+ G +
Sbjct: 230 VRTDMAGPKAT----------------KSPEEGAETPVYLALLPPDAEGPH 264
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 49/225 (21%)
Query: 107 ITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSS-IQLLINNAGILATS--S 163
+T R A F V++ S D++ + + H +++L++NAG+ A +
Sbjct: 64 VTHRGSGAPKGLFGVEVDVTDS-----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM 118
Query: 164 RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETI 222
R+T E ++++++ N GAF R+ S + RN F + ++
Sbjct: 119 RMTEEKFEKVINANLTGAF-----------------RVAQRASRSMQRNKFGRMIFIASV 161
Query: 223 TGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMRE 282
+G + + ++ Y SK ++ + + R L +V+ PG + T++ R
Sbjct: 162 SGLWGIGNQAN-----YAASKAGVIGMARSIAREL---SKANVTANVVAPGYIDTDMTRA 213
Query: 283 VPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVYFF 327
+ + A + P K + + P E +GV F
Sbjct: 214 LDERIQQGALQFI--------PAKRVGT-------PAEVAGVVSF 243
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 49/225 (21%)
Query: 107 ITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSS-IQLLINNAGILATS--S 163
+T R A F V++ S D++ + + H +++L++NAG+ A +
Sbjct: 44 VTHRGSGAPKGLFGVEVDVTDS-----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM 98
Query: 164 RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETI 222
R+T E ++++++ N GAF R+ S + RN F + ++
Sbjct: 99 RMTEEKFEKVINANLTGAF-----------------RVAQRASRSMQRNKFGRMIFIGSV 141
Query: 223 TGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMRE 282
+G + + ++ Y SK ++ + + R L +V+ PG + T++ R
Sbjct: 142 SGLWGIGNQAN-----YAASKAGVIGMARSIAREL---SKANVTANVVAPGYIDTDMTRA 193
Query: 283 VPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVYFF 327
+ + A + P K + + P E +GV F
Sbjct: 194 LDERIQQGALQFI--------PAKRVGT-------PAEVAGVVSF 223
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 144 DMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRI 201
D+ + +L+NNAG+ + R+ E +D +++TN G F RI
Sbjct: 78 DVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRI 136
Query: 202 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 261
VN+ S +TG P Y +K ++ + + L
Sbjct: 137 VNIASVVG------------VTGN--------PGQANYVAAKAGVIGLTKTSAKELA--- 173
Query: 262 SRHVSVIAADPGVVKTNI 279
SR+++V A PG + T++
Sbjct: 174 SRNITVNAIAPGFIATDM 191
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 87 GFHVVLVGRSSHLLSETMADITSR---NKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDS 143
G +VV+ R L ++ + K AR+ Q ++ + + V ++L + LD+
Sbjct: 42 GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEV----NNLVKSTLDT 97
Query: 144 DMHSSIQLLINNAG--ILATSSRLTPEGYDQMMSTNYIGAFF 183
I L+NN G L+ + ++ +G+ ++ TN G F+
Sbjct: 98 --FGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFY 137
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 147 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 204
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 205 TS 206
+S
Sbjct: 152 SS 153
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 147 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 204
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 205 TS 206
+S
Sbjct: 152 SS 153
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 147 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 204
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 205 TS 206
+S
Sbjct: 152 SS 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,192,415
Number of Sequences: 62578
Number of extensions: 322666
Number of successful extensions: 959
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 37
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)