BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017581
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 256/350 (73%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPGAFG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGAFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 255/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 255/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 255/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 254/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIP FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPAPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 254/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG F GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFASGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 254/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGAGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 254/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 253/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GK
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKA 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/349 (56%), Positives = 251/349 (71%), Gaps = 8/349 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-QG 200
GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++ G
Sbjct: 124 A-KVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 201 VKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV 260
K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG KTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSAKTV 242
Query: 261 ISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANTS 319
L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANTS
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANTS 298
Query: 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
NMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 299 NMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 253/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG G T
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGAT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 253/350 (72%), Gaps = 10/350 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+ GD + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKV--GDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG G GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRL 347
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 254/347 (73%), Gaps = 9/347 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G ++K++GP VIA GM GA MY++ +VG + L+GEIIRL+GD+A +QVYE+T+GL V +P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDICKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T PL+VELGPG+L I+DGIQRPL+ I ++G +YI RGV V ALD++ W + P
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTG-IYITRGVVVHALDREKKWAWTPM 122
Query: 142 KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGV 201
+ GD + GG + TV E H + +PPD G+V V PAG+Y++++ V+ LE G
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGF-THKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE-DGT 179
Query: 202 KKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI 261
+ M WPVR RPV KL +TP LTG R+LD LFP +GGT AIPG FG GKTV
Sbjct: 180 E--LKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVT 237
Query: 262 SQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321
Q+L+K+SN+D VVYVGCGERGNEM +VL++FP+LT G +M RT L+ANTSNM
Sbjct: 238 QQSLAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGG---PLMHRTVLIANTSNM 294
Query: 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
PVAAREASIY G+TIAEYFRD G++V++MADSTSRWAEALREIS RL
Sbjct: 295 PVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRL 341
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 253/347 (72%), Gaps = 9/347 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G ++K++GP VIA GM GA MY++ +VG + L+GEIIRL+GD+A +QVYE+T+GL V +P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T PL+VELGPG+L I+DGIQRPL+ I ++G +YI RGV V ALD++ W + P
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTG-IYITRGVVVHALDREKKWAWTPM 122
Query: 142 KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGV 201
+ GD + GG + TV E H + +PPD G+V V PAG+Y++++ V+ LE G
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE-DGT 179
Query: 202 KKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI 261
+ M WPVR RPV KL +TP LTG R+LD LFP +GGT AIPG FG GK+V
Sbjct: 180 E--LKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237
Query: 262 SQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321
Q+L+K+SN+D VVYVG GERGNEM +VL++FP+LT G +M RT L+ANTSNM
Sbjct: 238 QQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGG---PLMHRTVLIANTSNM 294
Query: 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
PVAAREASIY G+TIAEYFRD G++V++MADSTSRWAEALREIS RL
Sbjct: 295 PVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRL 341
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 243/349 (69%), Gaps = 5/349 (1%)
Query: 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVN 79
+ G + KVSGP+V+A+ M+ A++ ++ VG +IGEII + D A+IQVYEET+G+
Sbjct: 9 QIGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPG 68
Query: 80 DPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQ 139
+PV T + LSVELGPGI+ +FDGIQRPL T + ++ RGV +PALD + W F+
Sbjct: 69 EPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFE 128
Query: 140 PKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQ 199
I EG ++ GD+ V E ++QH + +P G V + +G +++ D + +E +
Sbjct: 129 AT-IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKIE-SGSFTIDDPICVIETE 186
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
K TM+Q WPVR RP+ KL D P++TGQRV+D FP GG A+PG FG GKT
Sbjct: 187 QGLKELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319
V+ ++K+S+ D VVYVGCGERGNEM +V+ +FP+L + ES+M+RT L+ANTS
Sbjct: 247 VVQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPEL---IDPNTGESLMERTVLIANTS 303
Query: 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
NMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALRE+SGRL
Sbjct: 304 NMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRL 352
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 337 bits (864), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 173/349 (49%), Positives = 229/349 (65%), Gaps = 5/349 (1%)
Query: 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVN 79
+ G + KVSGP+V A+ + A++ + VG +IGEII D A+IQVYEET+G+
Sbjct: 9 QIGKIIKVSGPLVXAENXSEASIQDXCLVGDLGVIGEIIEXRQDVASIQVYEETSGIGPG 68
Query: 80 DPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQ 139
+PV T + LSVELGPGI+ FDGIQRPL T + ++ RGV +PALD + W F+
Sbjct: 69 EPVRSTGEALSVELGPGIISQXFDGIQRPLDTFXEVTQSNFLGRGVQLPALDHEKQWWFE 128
Query: 140 PKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQ 199
I EG ++ GD+ V E ++QH + +P G V + +G +++ D + +E +
Sbjct: 129 AT-IEEGTEVSAGDIIGYVDETKIIQHKIXVPNGIKGTVQKIE-SGSFTIDDPICVIETE 186
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
K T Q WPVR RP+ KL D P +TGQRV+D FP GG A+PG FG GKT
Sbjct: 187 QGLKELTXXQKWPVRRGRPIKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319
V+ ++K+S+ D VVYVGCGERGNE +V+ +FP+L + ES+ +RT L+ANTS
Sbjct: 247 VVQHQIAKWSDVDLVVYVGCGERGNEXTDVVNEFPEL---IDPNTGESLXERTVLIANTS 303
Query: 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368
N PVAAREASIYTGITIAEYFRD GY+V++ ADSTSRWAEALRE SGRL
Sbjct: 304 NXPVAAREASIYTGITIAEYFRDXGYDVAIXADSTSRWAEALREXSGRL 352
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 226 DTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNE 285
D P + G R +D L +G I G GK+ + + +++D +V GERG E
Sbjct: 52 DQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGRE 111
Query: 286 MAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345
+ E L PQ S + + LV TS+ P R + +T TIAEYFRD G
Sbjct: 112 VNEFLALLPQ-----------STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGK 160
Query: 346 NVSMMADSTSRWAEALREI 364
NV +M DS +R+A A R++
Sbjct: 161 NVLLMMDSVTRYARAARDV 179
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 209 QAWPVRTPRPVSSKLA-ADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267
+ P+ P P +L+ AD L TG +V+D L P GG + G G GKTV+ Q L
Sbjct: 107 ERHPIHRPAPEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 166
Query: 268 ---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324
+ V+ G GER E ++ + ++ V+ +T++V N P
Sbjct: 167 NVAQEHGGLSVFAGVGERTREGNDLYHEM----------KDSGVISKTSMVFGQMNEPPG 216
Query: 325 AREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
AR TG+T+AEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 217 ARLRVALTGLTMAEYFRDREGQDVLLFIDNIFRFTQAGSEVSALLG 262
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 15/163 (9%)
Query: 212 PVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK--- 267
P+ P P +LA + +L TG +V+D L P + GG + G G GKTV+ Q L
Sbjct: 117 PIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176
Query: 268 YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327
+ V+ G GER E ++ + ++ V+ +T +V N P AR
Sbjct: 177 QEHGGISVFAGVGERTREGNDLYHEM----------KDSGVISKTAMVFGQMNEPPGARM 226
Query: 328 ASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
TG+T+AEYFRD G + + D+ R+ +A E+S LG
Sbjct: 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLG 269
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 22 GYVRKVSGPVVIADGMNGA--AMYELVRVGHD---------NLIGEI-IRLEGDSATIQV 69
G V +V GPVV NG A+Y +++ H +L E+ + L D+
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 70 YEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
T GL+ V+ T P+SV +G LG +F+ + P+
Sbjct: 64 MASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPI 103
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 97 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 156
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 157 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 211
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 212 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 268
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 97 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 156
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 157 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 211
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 212 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 268
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 108 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 167
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 168 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 222
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 223 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 279
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 108 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 167
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 168 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 222
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 223 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 279
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 102 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 161
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 162 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 216
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 217 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 273
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 209 QAWPVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267
+ W + P +L+ LL TG +V+D + P GG + G G GKTV L +
Sbjct: 105 ERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIR 164
Query: 268 ---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324
+S V+ G GER E + + ++T + +V+ + +LV N P
Sbjct: 165 NIAIEHSGYSVFAGVGERTREGNDF---YHEMT-------DSNVIDKVSLVYGQMNEPPG 214
Query: 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369
R TG+T+AE FRD G +V + D+ R+ A E+S LG
Sbjct: 215 NRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLG 259
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 25/174 (14%)
Query: 209 QAWPVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTV------- 260
Q P+ P +++ + +L TG +V+D L P GG + G G GKTV
Sbjct: 112 QFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 171
Query: 261 -ISQALSKYSNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVA 316
+++A YS V+ G GER GN++ +++ + + + + LV
Sbjct: 172 NVAKAHGGYS-----VFAGVGERTREGNDLYHEMIESGVINL-------KDATSKVALVY 219
Query: 317 NTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
N P AR TG+T+AEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 220 GQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 273
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 135 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 194
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 195 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 249
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S LG
Sbjct: 250 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 306
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 135 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 189
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 190 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 242
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
EYFRD G +V + D+ R+ +A E+S LG
Sbjct: 243 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 275
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 192 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 244
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
EYFRD G +V + D+ R+ +A E+S LG
Sbjct: 245 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 277
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 192 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 244
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
EYFRD G +V + D+ R+ +A E+S LG
Sbjct: 245 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 277
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 192 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 244
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
EYFRD G +V + D+ R+ +A E+S LG
Sbjct: 245 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 277
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 125 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 179
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 180 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 232
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
EYFRD G +V + D+ R+ +A E+S LG
Sbjct: 233 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 265
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 183 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 237
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 238 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 290
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369
EYFRD G +V + D+ R+ +A E+S LG
Sbjct: 291 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 323
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 231 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVL 290
TG R ++AL G + G GK+V+ +++Y+ +D +V GERG E+ + +
Sbjct: 143 TGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFI 202
Query: 291 MDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMM 350
+ + PDGR SV+ + A P+ + + Y IAE FRD G +V ++
Sbjct: 203 EN-----ILGPDGRARSVV----IAAPADVSPLLRMQGAAYA-TRIAEDFRDRGQHVLLI 252
Query: 351 ADSTSRWAEALREISGRLG 369
DS +R+A A REI+ +G
Sbjct: 253 MDSLTRYAMAQREIALAIG 271
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 205 FTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQ 263
T ++ + +P P + S+ + PL TG +DA+ P G I G GKT ++
Sbjct: 122 ITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVAT 181
Query: 264 --ALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321
L++ + VYV G++ + +A+V+ +F +E M+ T +VA T++
Sbjct: 182 DTILNQQGQNVICVYVAIGQKASSVAQVVTNF----------QERGAMEYTIVVAETADS 231
Query: 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
P + + YTG +AEYF + ++ D S+ A+A R++S
Sbjct: 232 PATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMS 275
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 219 VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--ISQALSKYSNSDTVVY 276
V + + D P+ TG + +D++ P G I G GKT I +++ + +Y
Sbjct: 136 VIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIY 195
Query: 277 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITI 336
V G++ + ++ V+ E + T +V T++ A + + Y G +
Sbjct: 196 VAIGQKASTISNVVRKL----------EEHGALANTIVVVATASESAALQYLAPYAGCAM 245
Query: 337 AEYFRDMGYNVSMMADSTSRWAEALREIS 365
EYFRD G + ++ D S+ A A R+IS
Sbjct: 246 GEYFRDRGEDALIIYDDLSKQAVAYRQIS 274
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETAG 75
EY +++V GP++ + ++G EL+ V N G+++ ++ D A +Q++E T+G
Sbjct: 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSG 69
Query: 76 LMVNDPVLR-THKPLSVELGPGILGNIFDGIQRP 108
+ + + +R PL + + ++G +FDG+ RP
Sbjct: 70 INLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRP 103
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 286 MAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMG 344
A + + F + + D R+ + R+ + N +N P R A+ +T AEY + G
Sbjct: 188 FAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKG 247
Query: 345 YNVSMMADSTSRWAEALREISG 366
+V ++ + +AEALREIS
Sbjct: 248 MHVLVIMTDMTNYAEALREISA 269
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 212 PVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS--QALSKY 268
P+ +P P V + + PL TG + +D++ P G I G GKT I+ +++
Sbjct: 128 PIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187
Query: 269 SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A V+ R+ + T +V +++ P
Sbjct: 188 GQDVICIYVAIGQKQSTVAGVVETL----------RQHDALDYTIVVTASASEPAPLLYL 237
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y G + EYF G + ++ D S+ A A RE+S
Sbjct: 238 APYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELS 274
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 209 QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT--VISQAL 265
+ P+ + P V + + PL TG + +DAL P G I G GKT I +
Sbjct: 125 ETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTII 184
Query: 266 SKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325
++ + +YV G++ + +A V+ + PD T +V +++ P
Sbjct: 185 NQKDQNMICIYVAIGQKESTVATVVETLAK--HGAPD--------YTIVVTASASQPAPL 234
Query: 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y G+ + EYF MG +V ++ D S+ A A R++S
Sbjct: 235 LFLAPYAGVAMGEYFMIMGKHVLVVIDDLSKQAAAYRQLS 274
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETAG 75
EY +++V GP+ + ++G EL+ V N G+++ ++ D A +Q++E T+G
Sbjct: 10 KEYRTIKEVVGPLXAVEKVSGVKYEELIEVRXQNGEIRRGQVLEVQEDKAXVQIFEGTSG 69
Query: 76 LMVNDPVLR-THKPLSVELGPGILGNIFDGIQRP 108
+ + + +R PL + + +G +FDG+ RP
Sbjct: 70 INLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRP 103
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 304 REESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALR 362
R+ + R+ N +N P R A+ +T AEY + G +V ++ + +AEALR
Sbjct: 206 RQTGAIDRSVXFXNLANDPAIERIATPRXALTAAEYLAYEKGXHVLVIXTDXTNYAEALR 265
Query: 363 EISG 366
EIS
Sbjct: 266 EISA 269
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 226 DTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS--QALSKYSNSDTVVYVGCGERG 283
DTPL TG + +D+ P G I G GKT I+ +++ +YV G++
Sbjct: 156 DTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKK 215
Query: 284 NEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM 343
+ +A ++ R+ + TT+V +++ P + + + Y G EYF
Sbjct: 216 SAIARIIDKL----------RQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYS 265
Query: 344 GYNVSMMADSTSRWAEALREIS 365
G + ++ D S+ A A R++S
Sbjct: 266 GRDALVVYDDLSKHAVAYRQLS 287
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ V ++ +FE++ + G V +V + A G+N + ELV + G L
Sbjct: 20 ITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVXVSELVEFVETGVKGVAFNL 79
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E D+ I + E + V R + + V +G +LG + + + PL
Sbjct: 80 EEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPL 128
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 116 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 172
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 173 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 222
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 223 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 259
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 123 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 182
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 183 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 232
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREIS 365
E+FRD G + ++ D S+ A A R++S
Sbjct: 233 EWFRDNGKHALIVYDDLSKQAVAYRQLS 260
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMV 78
+E G V V + G+N ELV + G + LE I ++ +
Sbjct: 4 NETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNLEPGQVGIVLFGSDRLVKE 62
Query: 79 NDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
+ V RT + V +GPG+LG + D + P+
Sbjct: 63 GELVKRTGNIVDVPVGPGLLGRVVDALGNPI 93
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 122 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 181
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 182 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 231
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREIS 365
E+FRD G + ++ D S+ A A R++S
Sbjct: 232 EWFRDNGKHALIVYDDLSKQAVAYRQLS 259
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMV 78
+E G V V + G+N ELV + G + LE I ++ +
Sbjct: 3 NETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNLEPGQVGIVLFGSDRLVKE 61
Query: 79 NDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
+ V RT + V +GPG+LG + D + P+
Sbjct: 62 GELVKRTGNIVDVPVGPGLLGRVVDALGNPI 92
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 207 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREIS 365
E+FRD G + ++ D S+ A A R++S
Sbjct: 257 EWFRDNGKHALIVYDDLSKQAVAYRQLS 284
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 10 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALIL 68
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 69 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 207 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREIS 365
E+FRD G + ++ D S+ A A R++S
Sbjct: 257 EWFRDNGKHALIVYDDLSKQAVAYRQLS 284
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 10 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNL 68
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 69 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 207 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREIS 365
E+FRD G + ++ D S+ A A R++S
Sbjct: 257 EWFRDNGKHALIVYDDLSKQAVAYRQLS 284
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 10 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNL 68
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 69 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 121 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 177
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 178 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 227
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 228 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 264
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 212 PVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK--- 267
P+ P ++L + TG +V++ L P GG + G G GKTV+ L
Sbjct: 131 PIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA 190
Query: 268 YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327
++ V+ G GER E ++ M+ + + ES + LV N P AR
Sbjct: 191 KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAES---KVALVYGQMNEPPGARM 247
Query: 328 ASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLG 369
T +T+AEYFRD+ +V + D+ R+ +A E+S LG
Sbjct: 248 RVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLG 290
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 182 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 241
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 242 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 291
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREIS 365
E+FRD G + ++ D S+ A A R++S
Sbjct: 292 EWFRDNGKHALIVYDDLSKQAVAYRQLS 319
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 45 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFS-SGVKGMALNL 103
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 104 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 152
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 182 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 238
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 239 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 288
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365
+ Y+G ++ EYFRD G + ++ D S+ A A R++S
Sbjct: 289 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 325
>pdb|1UM2|C Chain C, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|D Chain D, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 21
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 269 SNSDTVVYVGCGERGNEMAE 288
SNSD ++YVG GERGNEMAE
Sbjct: 2 SNSDAIIYVGSGERGNEMAE 21
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCG------ERGNEMAEVLMDFPQLTMTLP 301
A+PG G I Q L + V VG G E + A++ +DFP +
Sbjct: 135 IALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSV----- 189
Query: 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 356
G E++M TL T+ + AA+E I + +A + MG V T R
Sbjct: 190 -GATENIMSAATLAKGTTILENAAKEPEI---VDLANFLNAMGAKVRGAGTGTIR 240
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETA 74
+ EY + +SGP++ + A +V + G++I + + A IQV+EET
Sbjct: 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETT 64
Query: 75 GL-MVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
GL + V + + +LG F+GI +P+
Sbjct: 65 GLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPI 100
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 274 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333
VV+ G E++ + +F + + R+ L N ++ P R +
Sbjct: 189 VVFAAMGITQRELSYFIQEFERT----------GALSRSVLFLNKADDPTIERILTPRMA 238
Query: 334 ITIAEYFR-DMGYNVSMMADSTSRWAEALREI 364
+T+AEY + Y+V ++ + + EALREI
Sbjct: 239 LTVAEYLAFEHDYHVLVILTDMTNYCEALREI 270
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 12 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 71
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 72 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 104
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 3 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 62
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 63 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 274 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333
VV+ G E++ + +F + + R+ L N ++ P R +
Sbjct: 189 VVFAAMGITQRELSYFIQEFERT----------GALSRSVLFLNKADDPTIERILTPRMA 238
Query: 334 ITIAEYFR-DMGYNVSMMADSTSRWAEALREI 364
+T+AEY + Y+V ++ + ++EALREI
Sbjct: 239 LTVAEYLAFEHDYHVLVILTDMTNYSEALREI 270
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETA 74
+ EY + +SGP++ + A +V + G++I + + A IQV+EET
Sbjct: 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETT 64
Query: 75 GL-MVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
GL + V + + +LG F+GI +P+
Sbjct: 65 GLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPI 100
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 3 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 62
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 63 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 3 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 62
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 63 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 12 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 71
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 72 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 104
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 QALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKR 311
+ALS + N+ ++ G +RGNE E++ D L + G S +KR
Sbjct: 339 KALSGFDNTKVILIAGGLDRGNEFDELIPDITGLKHXVVLGESASRVKR 387
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 228 PLLTGQRVLDAL---FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVG 278
P T R L ++ PS G TCA+ G G GK+ I++ L ++ +++ + +G
Sbjct: 28 PKQTNHRTLKSINFFIPS--GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIG 79
>pdb|3ZRH|A Chain A, Crystal Structure Of The Lys29, Lys33-Linkage-Specific
Trabid Otu Deubiquitinase Domain Reveals An
Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)
Length = 454
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 17/195 (8%)
Query: 60 LEGDSATIQVYEETAG----LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 115
+EGD A I+ Y+ + G + D V ++P + ++G ++ ++ QR +AI
Sbjct: 31 VEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLV-HLAIRFQRQ-DMLAIL 88
Query: 116 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175
+V +PA+ L E ++I GD +A F L+ LP D
Sbjct: 89 LTEVSQQAAKCIPAMVCPELTEQIRREIAASLHQRKGD-FACYFLTDLVT--FTLPAD-- 143
Query: 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRV 235
+ + P Q L D VL+ + Q + + + W + + S+L A L +
Sbjct: 144 --IEDLPPTVQEKLFDEVLDRDVQKELEEESPIINWSLELATRLDSRLYA----LWNRTA 197
Query: 236 LDALFPSVLGGTCAI 250
D L SVL T I
Sbjct: 198 GDCLLDSVLQATWGI 212
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCG--ERGNEM---AEVLMDFPQLTMTLPD 302
A+PG G + L + VV + G E E A+V +DFP +
Sbjct: 135 VALPGGCAIGSRPVDLHLKGFEAMGAVVKIENGYIEATAEKLVGAKVYLDFPSV------ 188
Query: 303 GREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNV 347
G +++M TL T+ + ARE I + +A + MG V
Sbjct: 189 GATQNIMMAATLAEGTTVIENVAREPEI---VDLANFLNQMGARV 230
>pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 301
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 8 RLTTFEDEEKESEY-GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEI-IRLEGDSA 65
R F E++ ++ G+ V P +I+ M G Y L + HD G I L+ +
Sbjct: 76 RERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVN 135
Query: 66 TIQVYEETAGL 76
QV+ +T G+
Sbjct: 136 VTQVFVDTVGM 146
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 256 CGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFP-QLTMTLPDGREESVMKRTTL 314
G T + QA+ K S VV G GN ++ + +P + + G +S R +
Sbjct: 129 SGSTALKQAVDKAYASGIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSNKNRASF 188
Query: 315 VANTSNMPVAAREASIYT 332
+ S + V A S+Y+
Sbjct: 189 SSVGSELEVMAPGVSVYS 206
>pdb|4HST|B Chain B, Crystal Structure Of A Double Mutant Of A Class Iii
Engineered Cephalosporin Acylase
Length = 543
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 18 ESEYGYVRKVSGPVVIADGMNGAAM-YELVRVGHDNLIGEII-RLEGDSATIQVYEETAG 75
+ E+ V GPV+ D +GAA+ V+ +L + + R+ G S Q+Y+ T G
Sbjct: 113 DREFDIVETRHGPVIAGDPRDGAALTLRSVQFAETDLSFDCLTRMPGASTVAQLYDATRG 172
Query: 76 LMVND 80
+ D
Sbjct: 173 WGLID 177
>pdb|4HSR|B Chain B, Crystal Structure Of A Class Iii Engineered Cephalosporin
Acylase
Length = 543
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 18 ESEYGYVRKVSGPVVIADGMNGAAM-YELVRVGHDNLIGEII-RLEGDSATIQVYEETAG 75
+ E+ V GPV+ D +GAA+ V+ +L + + R+ G S Q+Y+ T G
Sbjct: 113 DREFDIVETRHGPVIAGDPRDGAALTLRSVQFAETDLSFDCLTRMPGASTVAQLYDATRG 172
Query: 76 LMVND 80
+ D
Sbjct: 173 WGLID 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,279,215
Number of Sequences: 62578
Number of extensions: 480027
Number of successful extensions: 1258
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 112
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)