Query 017581
Match_columns 369
No_of_seqs 169 out of 1285
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01042 V-ATPase_V1_A V-type 100.0 5.7E-94 1.2E-98 738.2 33.5 349 20-369 1-349 (591)
2 TIGR01043 ATP_syn_A_arch ATP s 100.0 8.7E-92 1.9E-96 724.5 34.5 342 22-369 2-343 (578)
3 PRK04192 V-type ATP synthase s 100.0 9.9E-92 2.2E-96 725.0 34.7 345 20-369 3-348 (586)
4 COG1155 NtpA Archaeal/vacuolar 100.0 5.6E-82 1.2E-86 634.6 25.4 343 21-369 2-345 (588)
5 KOG1352 Vacuolar H+-ATPase V1 100.0 6.5E-82 1.4E-86 616.1 16.6 366 3-369 3-368 (618)
6 PRK14698 V-type ATP synthase s 100.0 8E-79 1.7E-83 664.5 31.8 237 20-258 3-240 (1017)
7 cd01134 V_A-ATPase_A V/A-type 100.0 3.9E-79 8.4E-84 599.4 23.6 278 88-369 1-278 (369)
8 TIGR03324 alt_F1F0_F1_al alter 100.0 7.1E-70 1.5E-74 555.6 28.8 267 2-369 9-278 (497)
9 COG1157 FliI Flagellar biosynt 100.0 2.4E-68 5.1E-73 527.8 26.5 258 11-369 15-277 (441)
10 PRK13343 F0F1 ATP synthase sub 100.0 9.6E-68 2.1E-72 541.5 27.8 266 3-369 10-278 (502)
11 TIGR00962 atpA proton transloc 100.0 1.1E-67 2.5E-72 542.8 28.2 267 2-369 8-277 (501)
12 PRK09281 F0F1 ATP synthase sub 100.0 1.2E-67 2.6E-72 542.7 28.1 266 3-369 10-278 (502)
13 PRK04196 V-type ATP synthase s 100.0 1.7E-66 3.7E-71 530.1 28.8 251 19-369 2-264 (460)
14 TIGR01041 ATP_syn_B_arch ATP s 100.0 5.3E-66 1.2E-70 525.5 28.2 250 20-369 1-262 (458)
15 CHL00059 atpA ATP synthase CF1 100.0 1.9E-65 4.1E-70 521.2 28.5 252 17-369 3-257 (485)
16 PRK02118 V-type ATP synthase s 100.0 1.7E-64 3.6E-69 509.6 29.2 249 19-369 3-255 (436)
17 PRK06936 type III secretion sy 100.0 5.7E-64 1.2E-68 507.1 29.2 263 3-369 9-276 (439)
18 PRK09280 F0F1 ATP synthase sub 100.0 4.7E-64 1E-68 510.1 26.7 250 20-369 2-262 (463)
19 PRK12597 F0F1 ATP synthase sub 100.0 7.6E-64 1.7E-68 509.7 26.9 250 20-369 2-261 (461)
20 PRK08972 fliI flagellum-specif 100.0 2.3E-63 4.9E-68 501.9 29.6 251 18-369 23-276 (444)
21 TIGR01040 V-ATPase_V1_B V-type 100.0 1.3E-63 2.9E-68 504.5 26.6 250 20-369 1-271 (466)
22 PTZ00185 ATPase alpha subunit; 100.0 6.2E-63 1.3E-67 502.5 28.1 259 18-369 37-313 (574)
23 TIGR01039 atpD ATP synthase, F 100.0 4.2E-63 9.2E-68 501.9 25.9 248 21-369 2-261 (461)
24 PRK07165 F0F1 ATP synthase sub 100.0 7.6E-63 1.7E-67 503.8 27.2 250 23-369 4-257 (507)
25 CHL00060 atpB ATP synthase CF1 100.0 2.8E-62 6.1E-67 498.9 28.0 259 17-369 12-286 (494)
26 COG0056 AtpA F0F1-type ATP syn 100.0 4E-63 8.7E-68 491.6 20.9 268 1-369 8-278 (504)
27 PRK08927 fliI flagellum-specif 100.0 7.7E-62 1.7E-66 492.0 29.6 255 16-369 13-272 (442)
28 TIGR03305 alt_F1F0_F1_bet alte 100.0 9.5E-62 2.1E-66 492.1 27.3 248 22-369 1-256 (449)
29 PRK06820 type III secretion sy 100.0 4E-61 8.8E-66 487.3 29.0 265 3-369 11-277 (440)
30 PRK09099 type III secretion sy 100.0 2.7E-60 5.8E-65 481.8 29.3 253 16-369 20-277 (441)
31 PRK05922 type III secretion sy 100.0 3.4E-60 7.4E-65 479.4 29.1 251 18-369 17-271 (434)
32 PRK05688 fliI flagellum-specif 100.0 2.7E-60 5.9E-65 481.7 27.8 264 5-369 8-282 (451)
33 TIGR03496 FliI_clade1 flagella 100.0 1.4E-59 3E-64 474.1 28.2 247 22-369 1-251 (411)
34 PRK07594 type III secretion sy 100.0 4.4E-59 9.5E-64 471.6 29.3 257 11-369 12-269 (433)
35 TIGR03498 FliI_clade3 flagella 100.0 5.9E-59 1.3E-63 469.9 28.1 249 22-369 1-254 (418)
36 PRK07960 fliI flagellum-specif 100.0 9.3E-59 2E-63 469.6 27.7 253 16-369 23-289 (455)
37 TIGR03497 FliI_clade2 flagella 100.0 1.7E-58 3.8E-63 466.3 27.6 247 22-369 1-251 (413)
38 PRK08472 fliI flagellum-specif 100.0 4.7E-58 1E-62 464.3 27.6 252 16-369 14-270 (434)
39 TIGR01026 fliI_yscN ATPase Fli 100.0 1.8E-57 3.8E-62 462.3 29.4 253 17-369 20-277 (440)
40 PRK08149 ATP synthase SpaL; Va 100.0 1.8E-57 3.9E-62 459.3 28.1 255 18-369 4-265 (428)
41 PRK06002 fliI flagellum-specif 100.0 7E-57 1.5E-61 456.3 28.1 264 5-369 10-278 (450)
42 PRK07721 fliI flagellum-specif 100.0 1E-56 2.2E-61 456.5 27.9 252 17-369 15-272 (438)
43 TIGR02546 III_secr_ATP type II 100.0 1.5E-55 3.2E-60 446.7 28.0 253 18-369 3-259 (422)
44 PRK06793 fliI flagellum-specif 100.0 2.1E-55 4.6E-60 444.7 27.5 263 6-369 7-270 (432)
45 PRK07196 fliI flagellum-specif 100.0 3.1E-55 6.7E-60 443.7 26.9 260 9-369 6-269 (434)
46 cd01135 V_A-ATPase_B V/A-type 100.0 3.9E-55 8.5E-60 419.3 18.6 150 210-369 33-190 (276)
47 cd01133 F1-ATPase_beta F1 ATP 100.0 3.3E-53 7.2E-58 406.4 17.4 151 209-369 32-187 (274)
48 cd01132 F1_ATPase_alpha F1 ATP 100.0 9.8E-53 2.1E-57 402.7 17.4 151 209-369 32-185 (274)
49 PRK06315 type III secretion sy 100.0 3.8E-51 8.2E-56 414.7 25.7 256 16-369 19-279 (442)
50 COG0055 AtpD F0F1-type ATP syn 100.0 1.3E-48 2.8E-53 381.5 16.8 252 20-369 2-265 (468)
51 cd01136 ATPase_flagellum-secre 100.0 6.3E-46 1.4E-50 364.5 17.8 151 209-369 32-183 (326)
52 COG1156 NtpB Archaeal/vacuolar 100.0 3.9E-45 8.4E-50 359.8 16.2 252 18-368 4-266 (463)
53 KOG1351 Vacuolar H+-ATPase V1 100.0 6.7E-40 1.5E-44 312.3 16.7 262 6-367 10-291 (489)
54 KOG1350 F0F1-type ATP synthase 100.0 8.6E-40 1.9E-44 314.2 10.6 258 18-369 49-315 (521)
55 PF00006 ATP-synt_ab: ATP synt 100.0 5.7E-39 1.2E-43 299.2 12.2 129 231-369 1-129 (215)
56 PRK12608 transcription termina 100.0 2.4E-35 5.1E-40 293.1 15.2 183 74-369 57-244 (380)
57 PRK12678 transcription termina 100.0 1E-32 2.2E-37 284.2 14.6 137 216-369 386-527 (672)
58 KOG1353 F0F1-type ATP synthase 100.0 4E-33 8.6E-38 260.8 0.0 228 1-336 1-238 (340)
59 PRK09376 rho transcription ter 100.0 2.2E-29 4.8E-34 251.4 14.5 137 216-369 138-280 (416)
60 cd01128 rho_factor Transcripti 99.9 1.6E-25 3.6E-30 213.1 13.4 120 233-369 4-127 (249)
61 TIGR00767 rho transcription te 99.9 8.7E-24 1.9E-28 212.0 14.0 125 228-369 151-279 (415)
62 COG1158 Rho Transcription term 99.7 1.1E-17 2.4E-22 162.8 11.0 116 233-365 161-280 (422)
63 COG1116 TauB ABC-type nitrate/ 99.5 3.8E-15 8.1E-20 140.9 3.0 125 223-368 7-135 (248)
64 COG3842 PotA ABC-type spermidi 99.3 2.9E-12 6.4E-17 127.5 5.6 128 219-366 5-139 (352)
65 COG1126 GlnQ ABC-type polar am 99.0 1.7E-10 3.8E-15 107.5 4.7 123 223-366 6-139 (240)
66 COG4525 TauB ABC-type taurine 98.9 2E-10 4.3E-15 105.9 0.9 114 234-367 19-136 (259)
67 COG3839 MalK ABC-type sugar tr 98.9 5.6E-10 1.2E-14 110.8 3.2 124 223-366 7-136 (338)
68 PF02874 ATP-synt_ab_N: ATP sy 98.8 1.4E-08 3.1E-13 77.7 8.3 63 24-86 1-69 (69)
69 COG1125 OpuBA ABC-type proline 98.8 3.1E-09 6.7E-14 101.4 5.3 127 224-366 6-138 (309)
70 COG1135 AbcC ABC-type metal io 98.8 4.4E-09 9.5E-14 102.6 5.9 128 224-366 6-144 (339)
71 COG1118 CysA ABC-type sulfate/ 98.7 9.9E-09 2.1E-13 100.1 3.3 117 231-366 13-140 (345)
72 COG1136 SalX ABC-type antimicr 98.6 1E-08 2.3E-13 96.6 1.8 92 224-320 6-106 (226)
73 PRK11650 ugpC glycerol-3-phosp 98.6 2.9E-08 6.2E-13 99.5 2.5 123 225-366 9-137 (356)
74 COG2884 FtsE Predicted ATPase 98.5 5.3E-08 1.2E-12 89.5 3.7 125 223-366 5-140 (223)
75 PRK11432 fbpC ferric transport 98.5 3.3E-08 7.1E-13 98.9 1.9 123 224-366 11-139 (351)
76 TIGR03265 PhnT2 putative 2-ami 98.5 3.2E-08 7E-13 99.0 1.5 121 224-366 9-137 (353)
77 COG1123 ATPase components of v 98.5 7.1E-08 1.5E-12 100.7 3.9 132 218-366 279-432 (539)
78 PRK09452 potA putrescine/sperm 98.5 5.8E-08 1.3E-12 98.0 2.7 127 220-366 15-147 (375)
79 PRK11607 potG putrescine trans 98.5 5.5E-08 1.2E-12 98.2 2.3 125 220-366 20-152 (377)
80 COG4608 AppF ABC-type oligopep 98.5 3E-07 6.5E-12 88.5 6.5 46 233-278 26-74 (268)
81 COG1127 Ttg2A ABC-type transpo 98.4 3.5E-07 7.6E-12 86.7 6.0 130 219-368 8-150 (263)
82 TIGR02314 ABC_MetN D-methionin 98.4 9.4E-08 2E-12 95.4 1.9 115 233-366 18-143 (343)
83 COG3638 ABC-type phosphate/pho 98.4 3.9E-07 8.5E-12 86.2 5.6 94 220-319 4-103 (258)
84 TIGR03258 PhnT 2-aminoethylpho 98.3 1.4E-07 3.1E-12 94.7 1.5 123 224-366 10-140 (362)
85 PRK10851 sulfate/thiosulfate t 98.3 2.6E-07 5.6E-12 92.5 3.1 115 233-366 15-139 (353)
86 cd01120 RecA-like_NTPases RecA 98.3 6.4E-06 1.4E-10 70.6 11.2 97 248-360 2-100 (165)
87 TIGR01186 proV glycine betaine 98.3 2.2E-07 4.7E-12 93.5 1.8 116 232-366 5-132 (363)
88 COG4175 ProV ABC-type proline/ 98.2 7.1E-07 1.5E-11 87.7 3.8 125 230-368 37-169 (386)
89 PRK10584 putative ABC transpor 98.2 7.8E-07 1.7E-11 82.7 2.9 44 234-277 24-70 (228)
90 COG1124 DppF ABC-type dipeptid 98.2 1.3E-06 2.8E-11 83.0 4.2 55 224-278 8-68 (252)
91 cd03292 ABC_FtsE_transporter F 98.2 5.9E-07 1.3E-11 82.5 1.9 45 233-277 14-61 (214)
92 PRK11000 maltose/maltodextrin 98.2 5.7E-07 1.2E-11 90.5 1.6 45 233-277 16-63 (369)
93 COG1120 FepC ABC-type cobalami 98.2 4E-06 8.7E-11 80.6 7.3 48 232-279 14-64 (258)
94 COG3840 ThiQ ABC-type thiamine 98.2 2.5E-06 5.4E-11 78.4 5.2 91 240-344 20-118 (231)
95 PRK15079 oligopeptide ABC tran 98.2 1.1E-06 2.3E-11 87.4 2.9 45 233-277 34-81 (331)
96 TIGR00960 3a0501s02 Type II (G 98.1 1.1E-06 2.4E-11 81.1 2.6 44 234-277 17-63 (216)
97 PRK11629 lolD lipoprotein tran 98.1 9.1E-07 2E-11 82.7 1.8 45 233-277 22-69 (233)
98 TIGR02211 LolD_lipo_ex lipopro 98.1 1.6E-06 3.4E-11 80.2 2.7 45 233-277 18-65 (221)
99 PRK11153 metN DL-methionine tr 98.1 1.4E-06 3.1E-11 86.8 2.4 46 233-278 18-66 (343)
100 TIGR03415 ABC_choXWV_ATP choli 98.1 1.1E-06 2.5E-11 88.9 1.6 115 233-366 37-167 (382)
101 cd01394 radB RadB. The archaea 98.1 1.6E-05 3.4E-10 73.5 9.0 50 229-278 1-54 (218)
102 PRK10070 glycine betaine trans 98.1 1E-06 2.2E-11 89.7 1.2 45 234-278 42-89 (400)
103 cd01123 Rad51_DMC1_radA Rad51_ 98.1 1.5E-05 3.3E-10 74.1 8.9 116 229-358 1-128 (235)
104 PRK10908 cell division protein 98.1 2.4E-06 5.2E-11 79.2 3.3 45 233-277 15-62 (222)
105 COG0444 DppD ABC-type dipeptid 98.1 1.8E-06 4E-11 84.8 2.5 48 223-270 5-56 (316)
106 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.0 2.1E-06 4.6E-11 79.2 2.5 45 233-277 17-64 (218)
107 cd03269 ABC_putative_ATPase Th 98.0 2E-06 4.3E-11 79.0 2.3 44 234-277 14-60 (210)
108 cd03266 ABC_NatA_sodium_export 98.0 3.8E-06 8.2E-11 77.5 3.6 44 234-277 19-65 (218)
109 PRK11248 tauB taurine transpor 98.0 3.1E-06 6.7E-11 80.7 3.0 44 234-277 15-61 (255)
110 cd03263 ABC_subfamily_A The AB 98.0 3.6E-06 7.8E-11 77.8 3.2 45 233-277 15-62 (220)
111 cd03258 ABC_MetN_methionine_tr 98.0 2.8E-06 6E-11 79.3 2.5 44 234-277 19-65 (233)
112 cd01393 recA_like RecA is a b 98.0 2.9E-05 6.4E-10 71.7 9.3 40 229-268 1-42 (226)
113 COG4619 ABC-type uncharacteriz 98.0 7.5E-06 1.6E-10 74.4 4.9 49 229-277 12-63 (223)
114 PRK13632 cbiO cobalt transport 98.0 2.8E-06 6E-11 81.6 2.2 55 223-277 11-69 (271)
115 cd03218 ABC_YhbG The ABC trans 98.0 3.4E-06 7.3E-11 78.5 2.7 44 233-276 13-59 (232)
116 COG4181 Predicted ABC-type tra 98.0 2.9E-06 6.3E-11 77.3 2.1 115 220-344 7-135 (228)
117 TIGR02236 recomb_radA DNA repa 98.0 2.5E-05 5.5E-10 76.4 8.9 119 228-360 76-207 (310)
118 cd03261 ABC_Org_Solvent_Resist 98.0 3.3E-06 7.1E-11 79.0 2.5 46 233-278 13-61 (235)
119 cd03259 ABC_Carb_Solutes_like 98.0 3.1E-06 6.7E-11 77.9 2.2 43 234-276 14-59 (213)
120 PRK13650 cbiO cobalt transport 98.0 4.1E-06 9E-11 80.9 3.0 44 234-277 21-67 (279)
121 TIGR01188 drrA daunorubicin re 98.0 4E-06 8.7E-11 81.9 2.9 45 233-277 6-53 (302)
122 cd03301 ABC_MalK_N The N-termi 98.0 3.2E-06 7E-11 77.7 2.1 43 234-276 14-59 (213)
123 PRK13537 nodulation ABC transp 98.0 3.6E-06 7.8E-11 82.6 2.5 58 219-277 7-67 (306)
124 PRK13647 cbiO cobalt transport 98.0 4E-06 8.7E-11 80.7 2.6 45 233-277 18-65 (274)
125 PTZ00035 Rad51 protein; Provis 98.0 2.2E-05 4.8E-10 78.3 7.9 125 219-359 90-227 (337)
126 TIGR03608 L_ocin_972_ABC putat 98.0 2.4E-06 5.2E-11 78.0 1.0 44 234-277 12-58 (206)
127 TIGR03877 thermo_KaiC_1 KaiC d 97.9 4.5E-05 9.9E-10 71.9 9.6 65 229-293 3-71 (237)
128 cd03296 ABC_CysA_sulfate_impor 97.9 5.3E-06 1.2E-10 77.9 3.2 45 234-278 16-63 (239)
129 TIGR03864 PQQ_ABC_ATP ABC tran 97.9 4.8E-06 1E-10 78.0 2.9 44 234-277 15-61 (236)
130 PF06745 KaiC: KaiC; InterPro 97.9 7E-06 1.5E-10 76.3 3.9 120 229-357 1-127 (226)
131 TIGR03881 KaiC_arch_4 KaiC dom 97.9 4.1E-05 9E-10 71.2 9.0 61 229-289 2-66 (229)
132 PRK06067 flagellar accessory p 97.9 5.2E-05 1.1E-09 71.0 9.7 66 227-292 5-74 (234)
133 cd03219 ABC_Mj1267_LivG_branch 97.9 4.3E-06 9.4E-11 78.0 2.3 44 234-277 14-60 (236)
134 cd03293 ABC_NrtD_SsuB_transpor 97.9 3.1E-06 6.7E-11 78.4 1.2 43 234-276 18-63 (220)
135 PRK04328 hypothetical protein; 97.9 5.4E-05 1.2E-09 72.2 9.7 66 228-293 4-73 (249)
136 TIGR02012 tigrfam_recA protein 97.9 3.3E-05 7.2E-10 76.6 7.9 106 228-358 35-146 (321)
137 PRK10895 lipopolysaccharide AB 97.9 1.3E-05 2.9E-10 75.1 4.9 45 233-277 16-63 (241)
138 cd03265 ABC_DrrA DrrA is the A 97.9 7.1E-06 1.5E-10 76.0 2.8 44 234-277 14-60 (220)
139 cd03295 ABC_OpuCA_Osmoprotecti 97.9 6.5E-06 1.4E-10 77.4 2.5 44 234-277 15-61 (242)
140 PLN03187 meiotic recombination 97.9 5.1E-05 1.1E-09 76.0 8.7 121 224-359 103-235 (344)
141 cd03264 ABC_drug_resistance_li 97.9 7.3E-06 1.6E-10 75.3 2.5 43 234-277 14-59 (211)
142 PRK11308 dppF dipeptide transp 97.9 2E-05 4.3E-10 78.2 5.6 46 233-278 28-76 (327)
143 smart00382 AAA ATPases associa 97.8 2.4E-05 5.3E-10 63.9 5.1 35 244-278 1-37 (148)
144 COG0467 RAD55 RecA-superfamily 97.8 6E-05 1.3E-09 71.8 8.5 124 228-358 4-137 (260)
145 PRK13543 cytochrome c biogenes 97.8 2.2E-05 4.7E-10 72.7 5.2 60 217-277 9-71 (214)
146 PRK09354 recA recombinase A; P 97.8 4.8E-05 1E-09 76.3 8.0 109 226-358 38-151 (349)
147 TIGR02238 recomb_DMC1 meiotic 97.8 6E-05 1.3E-09 74.5 8.5 121 224-359 73-205 (313)
148 TIGR01166 cbiO cobalt transpor 97.8 2.2E-05 4.8E-10 71.0 4.9 45 233-277 5-52 (190)
149 TIGR03740 galliderm_ABC gallid 97.8 1.4E-05 3E-10 74.2 3.6 44 234-277 14-60 (223)
150 TIGR02315 ABC_phnC phosphonate 97.8 2.4E-05 5.1E-10 73.4 5.1 46 233-278 15-63 (243)
151 TIGR01288 nodI ATP-binding ABC 97.8 8.7E-06 1.9E-10 79.5 2.1 45 233-277 17-64 (303)
152 PRK13651 cobalt transporter AT 97.8 9.7E-06 2.1E-10 79.6 2.4 45 233-277 20-67 (305)
153 PRK09473 oppD oligopeptide tra 97.8 2E-05 4.4E-10 78.2 4.6 61 218-278 11-80 (330)
154 cd03254 ABCC_Glucan_exporter_l 97.8 2.2E-05 4.7E-10 73.0 4.6 43 234-276 17-62 (229)
155 PRK09493 glnQ glutamine ABC tr 97.8 1.4E-05 3.1E-10 74.9 3.4 44 234-277 15-61 (240)
156 cd00983 recA RecA is a bacter 97.8 3.4E-05 7.3E-10 76.7 6.0 107 228-358 35-146 (325)
157 cd03256 ABC_PhnC_transporter A 97.8 2.8E-05 6E-10 72.7 5.1 45 233-277 14-61 (241)
158 PRK15093 antimicrobial peptide 97.8 2.9E-05 6.2E-10 77.0 5.3 46 233-278 20-72 (330)
159 PRK13536 nodulation factor exp 97.8 8.4E-06 1.8E-10 81.3 1.5 58 219-277 41-101 (340)
160 PRK13548 hmuV hemin importer A 97.8 1.3E-05 2.8E-10 76.5 2.5 44 234-277 16-62 (258)
161 PRK13640 cbiO cobalt transport 97.8 1.2E-05 2.6E-10 77.8 2.2 38 234-271 21-59 (282)
162 PRK09361 radB DNA repair and r 97.7 0.00013 2.9E-09 67.6 8.9 54 226-279 2-59 (225)
163 TIGR02673 FtsE cell division A 97.7 3.8E-05 8.3E-10 70.6 5.2 45 233-277 15-62 (214)
164 PRK09536 btuD corrinoid ABC tr 97.7 2.4E-05 5.2E-10 79.9 4.2 47 232-278 15-64 (402)
165 PRK13648 cbiO cobalt transport 97.7 3.6E-05 7.8E-10 73.7 5.1 57 220-276 8-68 (269)
166 PRK09302 circadian clock prote 97.7 0.00014 3E-09 76.1 9.8 124 224-359 250-377 (509)
167 cd03298 ABC_ThiQ_thiamine_tran 97.7 1.7E-05 3.6E-10 72.9 2.6 41 237-277 16-58 (211)
168 COG1131 CcmA ABC-type multidru 97.7 2.2E-05 4.8E-10 76.7 3.6 50 223-272 8-58 (293)
169 PRK11022 dppD dipeptide transp 97.7 3.8E-05 8.2E-10 76.1 5.3 38 233-270 20-58 (326)
170 cd03226 ABC_cobalt_CbiO_domain 97.7 4.1E-05 8.9E-10 70.1 5.1 44 233-276 13-59 (205)
171 cd03294 ABC_Pro_Gly_Bertaine T 97.7 1.3E-05 2.8E-10 76.9 1.9 44 233-276 37-83 (269)
172 PRK14237 phosphate transporter 97.7 4.6E-05 1E-09 73.0 5.6 51 219-270 20-71 (267)
173 PRK11144 modC molybdate transp 97.7 1.7E-05 3.6E-10 79.4 2.6 42 236-277 15-58 (352)
174 PRK10247 putative ABC transpor 97.7 5.4E-05 1.2E-09 70.6 5.7 55 222-277 10-67 (225)
175 PRK10575 iron-hydroxamate tran 97.7 4.6E-05 1E-09 72.8 5.4 56 221-277 13-71 (265)
176 PRK10771 thiQ thiamine transpo 97.7 2E-05 4.3E-10 73.7 2.6 41 237-277 17-59 (232)
177 cd03257 ABC_NikE_OppD_transpor 97.7 5E-05 1.1E-09 70.3 5.1 43 234-276 19-64 (228)
178 PRK14242 phosphate transporter 97.7 5.1E-05 1.1E-09 71.7 5.2 51 218-269 5-56 (253)
179 PRK14273 phosphate ABC transpo 97.7 5.4E-05 1.2E-09 71.7 5.2 48 222-270 10-58 (254)
180 cd03250 ABCC_MRP_domain1 Domai 97.7 5E-05 1.1E-09 69.5 4.9 38 234-271 19-57 (204)
181 PRK13636 cbiO cobalt transport 97.7 5.7E-05 1.2E-09 73.1 5.5 55 223-277 9-66 (283)
182 PLN03186 DNA repair protein RA 97.7 0.00017 3.6E-09 72.2 8.9 119 226-359 102-232 (342)
183 cd03260 ABC_PstB_phosphate_tra 97.7 5.2E-05 1.1E-09 70.5 4.9 44 234-277 14-65 (227)
184 COG0411 LivG ABC-type branched 97.7 1.1E-05 2.4E-10 76.7 0.4 86 224-318 9-100 (250)
185 PRK13549 xylose transporter AT 97.7 2E-05 4.4E-10 82.1 2.4 48 223-271 9-57 (506)
186 cd03225 ABC_cobalt_CbiO_domain 97.7 5.4E-05 1.2E-09 69.4 4.9 44 234-277 15-61 (211)
187 cd00820 PEPCK_HprK Phosphoenol 97.7 4E-05 8.7E-10 64.5 3.6 35 232-266 1-36 (107)
188 TIGR03522 GldA_ABC_ATP gliding 97.7 2.1E-05 4.5E-10 76.9 2.1 44 233-276 15-61 (301)
189 COG1122 CbiO ABC-type cobalt t 97.7 2.3E-05 4.9E-10 74.5 2.3 119 229-366 13-141 (235)
190 PRK14248 phosphate ABC transpo 97.7 6.2E-05 1.4E-09 72.0 5.3 50 219-269 21-71 (268)
191 cd03235 ABC_Metallic_Cations A 97.6 5.7E-05 1.2E-09 69.5 4.9 44 234-277 13-59 (213)
192 cd03224 ABC_TM1139_LivF_branch 97.6 5.8E-05 1.3E-09 69.7 4.9 44 234-277 14-60 (222)
193 cd03223 ABCD_peroxisomal_ALDP 97.6 6.6E-05 1.4E-09 66.9 5.1 43 234-276 15-60 (166)
194 TIGR02323 CP_lyasePhnK phospho 97.6 6.4E-05 1.4E-09 71.0 5.3 45 234-278 17-64 (253)
195 cd03248 ABCC_TAP TAP, the Tran 97.6 6.3E-05 1.4E-09 69.8 5.1 44 233-276 27-73 (226)
196 TIGR02239 recomb_RAD51 DNA rep 97.6 0.00018 3.8E-09 71.3 8.5 118 226-358 75-204 (316)
197 TIGR03410 urea_trans_UrtE urea 97.6 6.2E-05 1.3E-09 70.1 5.0 44 234-277 14-60 (230)
198 TIGR01277 thiQ thiamine ABC tr 97.6 2.3E-05 4.9E-10 72.3 2.0 40 237-276 16-57 (213)
199 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.00022 4.8E-09 68.4 8.8 53 229-281 4-74 (259)
200 PRK13540 cytochrome c biogenes 97.6 7E-05 1.5E-09 68.5 5.1 44 233-276 14-60 (200)
201 cd03229 ABC_Class3 This class 97.6 6.9E-05 1.5E-09 67.3 5.0 44 234-277 14-60 (178)
202 PRK15056 manganese/iron transp 97.6 5.8E-05 1.2E-09 72.5 4.7 54 224-277 11-67 (272)
203 TIGR03411 urea_trans_UrtD urea 97.6 6.8E-05 1.5E-09 70.3 5.1 46 233-278 15-63 (242)
204 cd03252 ABCC_Hemolysin The ABC 97.6 6.4E-05 1.4E-09 70.3 4.8 45 233-277 15-62 (237)
205 cd03262 ABC_HisP_GlnQ_permease 97.6 7E-05 1.5E-09 68.7 5.0 44 234-277 14-60 (213)
206 PRK13635 cbiO cobalt transport 97.6 7.2E-05 1.6E-09 72.3 5.2 46 233-278 20-68 (279)
207 PRK11124 artP arginine transpo 97.6 7.3E-05 1.6E-09 70.2 5.1 44 234-277 16-62 (242)
208 cd03299 ABC_ModC_like Archeal 97.6 2.4E-05 5.1E-10 73.4 1.8 43 235-277 14-59 (235)
209 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 7E-05 1.5E-09 70.1 4.9 46 233-278 16-64 (238)
210 cd03290 ABCC_SUR1_N The SUR do 97.6 7.5E-05 1.6E-09 69.0 5.1 44 233-276 14-60 (218)
211 cd03216 ABC_Carb_Monos_I This 97.6 8E-05 1.7E-09 66.2 5.1 43 234-276 14-59 (163)
212 PRK13539 cytochrome c biogenes 97.6 7.6E-05 1.6E-09 68.7 5.0 44 234-277 16-62 (207)
213 cd03215 ABC_Carb_Monos_II This 97.6 7.4E-05 1.6E-09 67.4 4.9 43 235-277 15-60 (182)
214 PRK14274 phosphate ABC transpo 97.6 8.5E-05 1.8E-09 70.6 5.5 50 220-270 13-63 (259)
215 PRK11701 phnK phosphonate C-P 97.6 8.4E-05 1.8E-09 70.6 5.4 45 234-278 20-67 (258)
216 cd03233 ABC_PDR_domain1 The pl 97.6 8.1E-05 1.8E-09 68.4 5.1 39 232-270 19-58 (202)
217 PRK11247 ssuB aliphatic sulfon 97.6 7.4E-05 1.6E-09 71.5 5.0 53 223-276 16-71 (257)
218 PRK11831 putative ABC transpor 97.6 8.5E-05 1.9E-09 71.2 5.4 45 233-277 20-67 (269)
219 PRK10744 pstB phosphate transp 97.6 8.1E-05 1.8E-09 70.9 5.2 51 219-270 13-64 (260)
220 PRK10261 glutathione transport 97.6 7.2E-05 1.6E-09 80.2 5.4 60 219-278 12-77 (623)
221 PRK09984 phosphonate/organopho 97.6 6E-05 1.3E-09 71.8 4.3 48 223-271 8-56 (262)
222 PRK14254 phosphate ABC transpo 97.6 8.4E-05 1.8E-09 72.1 5.3 58 212-270 31-90 (285)
223 TIGR02769 nickel_nikE nickel i 97.6 8.1E-05 1.8E-09 71.2 5.1 45 233-277 24-71 (265)
224 PRK13652 cbiO cobalt transport 97.6 7.6E-05 1.6E-09 72.0 4.9 52 226-277 10-64 (277)
225 cd03222 ABC_RNaseL_inhibitor T 97.6 8.4E-05 1.8E-09 67.6 4.9 44 233-276 13-58 (177)
226 PRK11300 livG leucine/isoleuci 97.6 8.9E-05 1.9E-09 70.1 5.3 45 233-277 18-65 (255)
227 PRK14252 phosphate ABC transpo 97.6 0.00014 3E-09 69.4 6.7 37 234-270 30-67 (265)
228 cd03238 ABC_UvrA The excision 97.6 5.4E-05 1.2E-09 68.8 3.6 37 231-267 6-43 (176)
229 cd03268 ABC_BcrA_bacitracin_re 97.6 8.6E-05 1.9E-09 68.0 5.0 45 233-277 13-60 (208)
230 TIGR00968 3a0106s01 sulfate AB 97.6 3.6E-05 7.9E-10 72.3 2.5 43 234-276 14-59 (237)
231 PRK14247 phosphate ABC transpo 97.6 8.3E-05 1.8E-09 70.1 5.0 37 234-270 17-54 (250)
232 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 9.2E-05 2E-09 71.1 5.2 50 221-271 6-56 (254)
233 cd03247 ABCC_cytochrome_bd The 97.6 8.9E-05 1.9E-09 66.5 4.9 43 235-277 17-62 (178)
234 cd03230 ABC_DR_subfamily_A Thi 97.6 9.7E-05 2.1E-09 66.1 5.0 43 234-276 14-59 (173)
235 cd03251 ABCC_MsbA MsbA is an e 97.6 8.8E-05 1.9E-09 69.1 4.9 44 234-277 16-62 (234)
236 PRK13638 cbiO cobalt transport 97.6 6.9E-05 1.5E-09 71.9 4.3 46 233-278 14-62 (271)
237 PRK14241 phosphate transporter 97.6 9.4E-05 2E-09 70.3 5.2 38 233-270 17-55 (258)
238 PRK14267 phosphate ABC transpo 97.6 8.8E-05 1.9E-09 70.1 4.9 38 233-270 17-55 (253)
239 PRK11264 putative amino-acid A 97.6 9.9E-05 2.1E-09 69.6 5.3 44 234-277 17-63 (250)
240 PRK14268 phosphate ABC transpo 97.6 0.00015 3.3E-09 68.9 6.6 37 234-270 26-63 (258)
241 PRK14255 phosphate ABC transpo 97.6 0.0001 2.2E-09 69.7 5.3 36 234-269 19-55 (252)
242 TIGR01978 sufC FeS assembly AT 97.6 9.6E-05 2.1E-09 69.2 5.1 44 234-277 14-62 (243)
243 PRK13639 cbiO cobalt transport 97.6 8.9E-05 1.9E-09 71.4 4.9 45 233-277 15-62 (275)
244 PRK10419 nikE nickel transport 97.6 0.0001 2.2E-09 70.7 5.3 46 233-278 25-73 (268)
245 cd03245 ABCC_bacteriocin_expor 97.5 8.5E-05 1.8E-09 68.6 4.5 43 234-276 18-63 (220)
246 PRK14250 phosphate ABC transpo 97.5 0.0001 2.2E-09 69.4 5.1 45 234-278 17-64 (241)
247 PRK13631 cbiO cobalt transport 97.5 0.0001 2.3E-09 72.8 5.3 46 233-278 39-87 (320)
248 PRK10418 nikD nickel transport 97.5 0.00011 2.4E-09 69.7 5.3 40 232-271 15-55 (254)
249 cd03246 ABCC_Protease_Secretio 97.5 0.00011 2.3E-09 65.8 4.9 44 234-277 16-62 (173)
250 cd03253 ABCC_ATM1_transporter 97.5 0.0001 2.2E-09 68.8 5.0 43 234-276 15-60 (236)
251 PRK14249 phosphate ABC transpo 97.5 0.00011 2.4E-09 69.4 5.3 38 234-271 18-56 (251)
252 cd03231 ABC_CcmA_heme_exporter 97.5 9.8E-05 2.1E-09 67.6 4.7 44 234-277 14-60 (201)
253 COG4987 CydC ABC-type transpor 97.5 6.2E-05 1.3E-09 78.5 3.7 71 223-293 340-417 (573)
254 cd03213 ABCG_EPDR ABCG transpo 97.5 9.9E-05 2.2E-09 67.4 4.7 45 233-277 22-71 (194)
255 PRK14265 phosphate ABC transpo 97.5 0.00012 2.5E-09 70.6 5.4 49 220-269 21-70 (274)
256 PRK15177 Vi polysaccharide exp 97.5 7.4E-05 1.6E-09 69.3 3.9 37 235-271 2-39 (213)
257 PRK13644 cbiO cobalt transport 97.5 9.5E-05 2.1E-09 71.2 4.8 45 233-277 15-62 (274)
258 TIGR02142 modC_ABC molybdenum 97.5 4.5E-05 9.8E-10 76.3 2.6 40 237-276 15-56 (354)
259 PRK14263 phosphate ABC transpo 97.5 0.00012 2.6E-09 70.0 5.4 51 219-270 8-59 (261)
260 PRK10253 iron-enterobactin tra 97.5 9.9E-05 2.2E-09 70.5 4.8 45 233-277 20-67 (265)
261 cd03369 ABCC_NFT1 Domain 2 of 97.5 0.00011 2.3E-09 67.4 4.8 44 234-277 22-68 (207)
262 PRK13637 cbiO cobalt transport 97.5 0.0001 2.2E-09 71.6 4.9 45 234-278 21-68 (287)
263 PRK09544 znuC high-affinity zi 97.5 0.00012 2.6E-09 69.7 5.3 38 234-271 18-56 (251)
264 PRK10619 histidine/lysine/argi 97.5 0.00013 2.9E-09 69.2 5.6 45 233-277 18-65 (257)
265 PRK14238 phosphate transporter 97.5 0.00012 2.6E-09 70.3 5.3 50 220-270 25-75 (271)
266 PRK15112 antimicrobial peptide 97.5 0.00012 2.6E-09 70.1 5.3 45 233-277 26-73 (267)
267 PRK13645 cbiO cobalt transport 97.5 0.0001 2.3E-09 71.4 4.8 43 234-276 25-70 (289)
268 PRK11614 livF leucine/isoleuci 97.5 0.00011 2.4E-09 68.8 4.8 45 233-277 18-65 (237)
269 PRK13646 cbiO cobalt transport 97.5 0.00011 2.3E-09 71.3 4.8 45 233-277 20-67 (286)
270 cd03214 ABC_Iron-Siderophores_ 97.5 0.00013 2.7E-09 65.8 5.0 44 234-277 13-59 (180)
271 TIGR03005 ectoine_ehuA ectoine 97.5 0.00012 2.5E-09 69.3 5.0 44 234-277 14-60 (252)
272 PRK13633 cobalt transporter AT 97.5 0.00012 2.7E-09 70.6 5.2 45 233-277 23-70 (280)
273 PRK13649 cbiO cobalt transport 97.5 0.0001 2.3E-09 70.9 4.6 44 234-277 21-67 (280)
274 TIGR01189 ccmA heme ABC export 97.5 0.00014 3E-09 66.3 5.1 45 233-277 13-60 (198)
275 TIGR02324 CP_lyasePhnL phospho 97.5 0.00014 3.1E-09 67.4 5.2 45 233-277 21-68 (224)
276 PRK14253 phosphate ABC transpo 97.5 0.00014 3.1E-09 68.5 5.3 38 233-270 16-54 (249)
277 cd03244 ABCC_MRP_domain2 Domai 97.5 0.00012 2.5E-09 67.7 4.6 44 234-277 18-64 (221)
278 PRK13634 cbiO cobalt transport 97.5 0.00011 2.5E-09 71.3 4.7 45 233-277 20-67 (290)
279 PRK14261 phosphate ABC transpo 97.5 0.00014 3.1E-09 68.8 5.2 36 234-269 20-56 (253)
280 cd03267 ABC_NatA_like Similar 97.5 0.00014 3.1E-09 68.3 5.1 45 233-277 34-81 (236)
281 PRK11819 putative ABC transpor 97.5 0.00012 2.6E-09 77.3 5.1 52 220-271 7-59 (556)
282 cd03228 ABCC_MRP_Like The MRP 97.5 0.00014 3E-09 65.0 4.7 45 234-278 16-63 (171)
283 cd01121 Sms Sms (bacterial rad 97.5 0.00068 1.5E-08 68.6 10.2 53 226-278 61-117 (372)
284 PRK14262 phosphate ABC transpo 97.5 0.00014 3E-09 68.6 5.0 37 234-270 17-54 (250)
285 PRK08533 flagellar accessory p 97.5 0.00091 2E-08 63.1 10.4 63 229-291 6-72 (230)
286 PF00005 ABC_tran: ABC transpo 97.5 7.2E-05 1.6E-09 63.5 2.7 35 237-271 2-37 (137)
287 PRK13643 cbiO cobalt transport 97.5 0.00011 2.4E-09 71.3 4.3 45 234-278 20-67 (288)
288 PRK04301 radA DNA repair and r 97.5 0.0005 1.1E-08 67.7 9.0 118 228-360 83-213 (317)
289 PRK13538 cytochrome c biogenes 97.5 0.00016 3.5E-09 66.3 5.1 44 234-277 15-61 (204)
290 COG4555 NatA ABC-type Na+ tran 97.5 0.00011 2.4E-09 68.6 4.0 57 224-280 6-65 (245)
291 PRK14271 phosphate ABC transpo 97.5 0.00015 3.3E-09 69.9 5.2 50 220-270 22-72 (276)
292 PRK14256 phosphate ABC transpo 97.5 0.00015 3.2E-09 68.6 5.0 37 233-269 17-54 (252)
293 PRK14236 phosphate transporter 97.5 0.00018 3.8E-09 69.2 5.5 51 219-270 25-76 (272)
294 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.00016 3.5E-09 66.2 4.9 36 233-268 13-49 (200)
295 PRK13541 cytochrome c biogenes 97.4 0.00019 4E-09 65.4 5.3 41 235-276 16-59 (195)
296 PRK14259 phosphate ABC transpo 97.4 0.00017 3.7E-09 69.2 5.3 38 233-270 26-64 (269)
297 PRK13641 cbiO cobalt transport 97.4 0.00014 3.1E-09 70.4 4.8 43 234-276 21-66 (287)
298 PRK14240 phosphate transporter 97.4 0.00016 3.4E-09 68.3 4.8 36 234-269 17-53 (250)
299 PRK14239 phosphate transporter 97.4 0.00012 2.7E-09 69.0 4.1 35 234-268 19-54 (252)
300 TIGR00972 3a0107s01c2 phosphat 97.4 0.00013 2.9E-09 68.7 4.2 37 234-270 15-52 (247)
301 COG1123 ATPase components of v 97.4 0.00022 4.8E-09 74.9 6.2 39 233-271 22-61 (539)
302 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00019 4.2E-09 62.6 4.8 38 234-271 14-52 (144)
303 TIGR02655 circ_KaiC circadian 97.4 0.00099 2.1E-08 69.6 10.9 125 222-359 238-367 (484)
304 PRK13547 hmuV hemin importer A 97.4 0.00014 2.9E-09 70.3 4.2 39 233-271 14-53 (272)
305 PRK14244 phosphate ABC transpo 97.4 0.0002 4.3E-09 67.7 5.1 36 234-269 19-55 (251)
306 PRK13642 cbiO cobalt transport 97.4 0.0002 4.4E-09 69.0 5.2 45 233-277 20-67 (277)
307 PRK14235 phosphate transporter 97.4 0.0002 4.3E-09 68.6 5.2 38 233-270 32-70 (267)
308 PRK14275 phosphate ABC transpo 97.4 0.00019 4.2E-09 69.6 5.1 37 233-269 52-89 (286)
309 TIGR02982 heterocyst_DevA ABC 97.4 0.0002 4.3E-09 66.4 4.9 45 233-277 18-65 (220)
310 PRK14270 phosphate ABC transpo 97.4 0.0002 4.4E-09 67.6 5.1 37 234-270 18-55 (251)
311 PRK14251 phosphate ABC transpo 97.4 0.0002 4.4E-09 67.6 5.0 38 233-270 17-55 (251)
312 PRK10261 glutathione transport 97.4 0.00019 4.1E-09 77.0 5.4 60 219-278 313-385 (623)
313 PRK10762 D-ribose transporter 97.4 0.00017 3.7E-09 75.2 4.9 55 223-278 8-65 (501)
314 TIGR01184 ntrCD nitrate transp 97.4 0.00017 3.8E-09 67.4 4.5 38 240-277 6-45 (230)
315 PRK11823 DNA repair protein Ra 97.4 0.00079 1.7E-08 69.7 9.7 63 226-288 59-125 (446)
316 PRK14243 phosphate transporter 97.4 0.0002 4.3E-09 68.5 5.0 36 234-269 24-60 (264)
317 PRK09519 recA DNA recombinatio 97.4 0.00051 1.1E-08 75.3 8.6 107 228-358 40-151 (790)
318 CHL00131 ycf16 sulfate ABC tra 97.4 0.00023 4.9E-09 67.2 5.2 35 234-268 21-56 (252)
319 cd03300 ABC_PotA_N PotA is an 97.4 0.00022 4.8E-09 66.7 5.0 43 234-276 14-59 (232)
320 TIGR02868 CydC thiol reductant 97.4 0.00017 3.6E-09 75.5 4.6 45 234-278 349-396 (529)
321 PRK14272 phosphate ABC transpo 97.4 0.00016 3.5E-09 68.2 4.1 37 234-270 18-55 (252)
322 cd03232 ABC_PDR_domain2 The pl 97.4 0.00023 5E-09 64.8 4.9 35 234-268 21-56 (192)
323 TIGR00416 sms DNA repair prote 97.4 0.00051 1.1E-08 71.2 8.0 54 227-281 74-131 (454)
324 PRK09700 D-allose transporter 97.4 0.00021 4.5E-09 74.6 5.1 54 223-277 9-65 (510)
325 PRK14260 phosphate ABC transpo 97.4 0.00022 4.9E-09 67.8 4.9 38 233-270 20-58 (259)
326 PF08423 Rad51: Rad51; InterP 97.4 0.00071 1.5E-08 65.0 8.3 121 225-360 16-148 (256)
327 COG4172 ABC-type uncharacteriz 97.4 0.00017 3.7E-09 73.3 4.1 46 233-278 300-347 (534)
328 COG2274 SunT ABC-type bacterio 97.4 0.00014 3.1E-09 79.1 3.9 50 234-283 487-539 (709)
329 cd03236 ABC_RNaseL_inhibitor_d 97.4 0.00019 4E-09 68.8 4.3 38 235-272 16-53 (255)
330 PRK11231 fecE iron-dicitrate t 97.4 0.00024 5.2E-09 67.4 5.0 43 234-276 16-61 (255)
331 PRK09580 sufC cysteine desulfu 97.4 0.00022 4.7E-09 67.1 4.7 35 234-268 15-50 (248)
332 PRK14246 phosphate ABC transpo 97.3 0.00018 3.9E-09 68.6 4.1 51 220-271 11-62 (257)
333 cd03234 ABCG_White The White s 97.3 0.0002 4.3E-09 66.6 4.3 37 234-270 21-58 (226)
334 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.3 0.00021 4.4E-09 66.8 4.4 39 233-271 35-74 (224)
335 TIGR02770 nickel_nikD nickel i 97.3 0.00015 3.3E-09 67.7 3.5 36 236-271 2-38 (230)
336 cd03291 ABCC_CFTR1 The CFTR su 97.3 0.00025 5.5E-09 69.0 5.0 39 233-271 50-89 (282)
337 TIGR03873 F420-0_ABC_ATP propo 97.3 0.00026 5.6E-09 67.2 5.0 44 234-277 15-61 (256)
338 PRK10790 putative multidrug tr 97.3 0.00021 4.5E-09 75.9 4.6 45 234-278 355-402 (592)
339 PRK14264 phosphate ABC transpo 97.3 0.0003 6.5E-09 68.9 5.3 51 219-270 45-96 (305)
340 COG4559 ABC-type hemin transpo 97.3 0.00035 7.5E-09 65.8 5.3 54 230-283 11-67 (259)
341 PRK14269 phosphate ABC transpo 97.3 0.00032 7E-09 66.1 5.2 45 234-278 16-66 (246)
342 PRK13546 teichoic acids export 97.3 0.00028 6E-09 67.9 4.8 39 233-271 37-76 (264)
343 PRK14245 phosphate ABC transpo 97.3 0.00022 4.8E-09 67.4 3.9 35 234-268 17-52 (250)
344 COG4988 CydD ABC-type transpor 97.3 0.0003 6.6E-09 73.9 5.2 60 224-283 325-387 (559)
345 TIGR02237 recomb_radB DNA repa 97.3 0.0019 4.2E-08 59.1 10.0 100 242-359 9-111 (209)
346 PRK10636 putative ABC transpor 97.3 0.00035 7.6E-09 75.2 5.8 55 221-276 314-371 (638)
347 PRK15134 microcin C ABC transp 97.3 0.00026 5.5E-09 74.3 4.6 48 223-270 9-60 (529)
348 PRK14257 phosphate ABC transpo 97.3 0.00033 7.1E-09 69.6 5.1 51 220-270 81-133 (329)
349 PRK11174 cysteine/glutathione 97.3 0.00052 1.1E-08 72.7 6.9 46 233-279 363-411 (588)
350 PRK15439 autoinducer 2 ABC tra 97.3 0.00031 6.8E-09 73.4 5.2 56 221-277 13-71 (510)
351 TIGR03719 ABC_ABC_ChvD ATP-bin 97.3 0.00029 6.4E-09 74.4 5.0 48 224-271 9-57 (552)
352 PRK09302 circadian clock prote 97.3 0.0012 2.6E-08 69.1 9.4 66 228-293 12-82 (509)
353 TIGR01193 bacteriocin_ABC ABC- 97.3 0.00026 5.6E-09 76.8 4.5 47 232-278 486-535 (708)
354 PRK11176 lipid transporter ATP 97.3 0.00027 5.8E-09 74.7 4.5 46 234-279 357-405 (582)
355 COG0410 LivF ABC-type branched 97.2 0.00035 7.6E-09 66.1 4.7 50 229-278 12-64 (237)
356 PRK10636 putative ABC transpor 97.2 0.00024 5.2E-09 76.5 4.1 44 233-276 14-60 (638)
357 PRK15064 ABC transporter ATP-b 97.2 0.00027 5.8E-09 74.2 4.3 44 233-276 14-60 (530)
358 cd03288 ABCC_SUR2 The SUR doma 97.2 0.00037 8.1E-09 66.3 4.8 42 235-276 36-80 (257)
359 PRK11147 ABC transporter ATPas 97.2 0.00027 5.9E-09 76.0 4.2 52 224-276 8-62 (635)
360 PRK10535 macrolide transporter 97.2 0.00017 3.8E-09 77.7 2.7 46 233-278 21-69 (648)
361 TIGR03269 met_CoM_red_A2 methy 97.2 0.00043 9.2E-09 72.4 5.6 58 219-276 279-343 (520)
362 cd03270 ABC_UvrA_I The excisio 97.2 0.00023 5.1E-09 66.7 3.3 33 231-263 6-39 (226)
363 PRK13545 tagH teichoic acids e 97.2 0.00054 1.2E-08 72.3 6.3 48 224-271 26-76 (549)
364 TIGR03238 dnd_assoc_3 dnd syst 97.2 0.00025 5.5E-09 73.6 3.7 84 224-319 9-101 (504)
365 PRK10938 putative molybdenum t 97.2 0.00026 5.6E-09 73.5 3.7 44 233-276 16-62 (490)
366 PRK14258 phosphate ABC transpo 97.2 0.00032 7E-09 66.9 4.1 38 234-271 21-59 (261)
367 PRK14266 phosphate ABC transpo 97.2 0.00046 9.9E-09 65.1 5.1 36 234-269 17-53 (250)
368 TIGR03269 met_CoM_red_A2 methy 97.2 0.0004 8.7E-09 72.7 5.1 44 233-276 13-61 (520)
369 TIGR03771 anch_rpt_ABC anchore 97.2 0.0004 8.6E-09 64.7 4.5 38 240-277 1-40 (223)
370 PRK11288 araG L-arabinose tran 97.2 0.00041 8.8E-09 72.3 5.1 53 224-277 9-64 (501)
371 TIGR02655 circ_KaiC circadian 97.2 0.0015 3.3E-08 68.2 9.1 66 228-293 2-72 (484)
372 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.003 6.6E-08 58.6 10.2 62 232-293 1-66 (224)
373 PRK10522 multidrug transporter 97.2 0.00051 1.1E-08 72.4 5.5 46 234-279 337-385 (547)
374 KOG0057 Mitochondrial Fe/S clu 97.2 0.00049 1.1E-08 72.1 5.1 60 221-280 353-414 (591)
375 COG1134 TagH ABC-type polysacc 97.2 0.00036 7.7E-09 66.6 3.8 40 233-272 40-80 (249)
376 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00038 8.3E-09 75.2 4.6 46 234-279 467-515 (686)
377 PRK15134 microcin C ABC transp 97.1 0.00068 1.5E-08 71.1 6.0 59 219-277 275-345 (529)
378 TIGR03796 NHPM_micro_ABC1 NHPM 97.1 0.0004 8.6E-09 75.3 4.4 46 234-279 493-541 (710)
379 TIGR02633 xylG D-xylose ABC tr 97.1 0.00046 1E-08 71.8 4.7 45 233-277 14-63 (500)
380 PRK11147 ABC transporter ATPas 97.1 0.00056 1.2E-08 73.5 5.5 55 221-276 321-378 (635)
381 PRK03695 vitamin B12-transport 97.1 0.00048 1.1E-08 65.2 4.4 43 235-277 11-55 (248)
382 cd03289 ABCC_CFTR2 The CFTR su 97.1 0.00055 1.2E-08 66.4 4.8 45 234-278 18-64 (275)
383 PTZ00243 ABC transporter; Prov 97.1 0.00059 1.3E-08 80.3 5.9 63 220-282 1309-1375(1560)
384 PRK09700 D-allose transporter 97.1 0.00044 9.6E-09 72.1 4.4 45 234-278 277-324 (510)
385 COG4604 CeuD ABC-type enteroch 97.1 0.00079 1.7E-08 62.9 5.4 124 224-366 6-138 (252)
386 PLN03073 ABC transporter F fam 97.1 0.00063 1.4E-08 74.4 5.6 49 223-271 512-561 (718)
387 TIGR01257 rim_protein retinal- 97.1 0.0002 4.4E-09 85.7 1.8 59 219-277 928-990 (2272)
388 PRK13549 xylose transporter AT 97.1 0.00058 1.2E-08 71.3 4.9 59 219-277 259-323 (506)
389 COG0488 Uup ATPase components 97.1 0.00067 1.5E-08 71.6 5.4 53 219-271 321-374 (530)
390 PRK10982 galactose/methyl gala 97.1 0.00056 1.2E-08 71.0 4.7 45 233-277 11-58 (491)
391 TIGR02633 xylG D-xylose ABC tr 97.1 0.00067 1.4E-08 70.6 5.1 58 220-277 258-321 (500)
392 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00058 1.3E-08 59.9 4.0 38 234-271 13-51 (157)
393 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.00049 1.1E-08 65.5 3.7 32 240-271 20-51 (246)
394 PRK10938 putative molybdenum t 97.1 0.0007 1.5E-08 70.2 5.2 58 220-278 261-322 (490)
395 TIGR02857 CydD thiol reductant 97.0 0.00067 1.4E-08 71.0 5.0 45 234-278 336-383 (529)
396 PRK11160 cysteine/glutathione 97.0 0.00062 1.3E-08 72.3 4.6 46 234-279 354-402 (574)
397 COG4107 PhnK ABC-type phosphon 97.0 0.001 2.3E-08 61.0 5.2 95 218-322 5-102 (258)
398 cd01122 GP4d_helicase GP4d_hel 97.0 0.0094 2E-07 56.7 12.0 65 226-290 10-78 (271)
399 PRK13657 cyclic beta-1,2-gluca 97.0 0.00069 1.5E-08 71.9 4.6 46 234-279 349-397 (588)
400 COG1119 ModF ABC-type molybden 97.0 0.0021 4.5E-08 61.6 7.2 59 212-271 24-83 (257)
401 TIGR01257 rim_protein retinal- 97.0 0.00037 8E-09 83.5 2.6 55 224-278 1942-2000(2272)
402 TIGR01192 chvA glucan exporter 97.0 0.00067 1.4E-08 72.2 4.2 45 234-278 349-396 (585)
403 PRK15064 ABC transporter ATP-b 97.0 0.00079 1.7E-08 70.7 4.7 39 233-271 332-371 (530)
404 COG4136 ABC-type uncharacteriz 97.0 0.00067 1.5E-08 61.0 3.5 32 240-271 23-54 (213)
405 PRK11288 araG L-arabinose tran 97.0 0.00067 1.4E-08 70.7 4.1 44 234-277 267-313 (501)
406 cd00009 AAA The AAA+ (ATPases 97.0 0.0059 1.3E-07 50.3 9.1 26 244-269 18-43 (151)
407 TIGR03375 type_I_sec_LssB type 97.0 0.00077 1.7E-08 73.0 4.6 45 234-278 479-526 (694)
408 TIGR02204 MsbA_rel ABC transpo 97.0 0.00083 1.8E-08 70.8 4.8 44 235-278 355-401 (576)
409 PRK10789 putative multidrug tr 96.9 0.00073 1.6E-08 71.6 4.3 44 234-277 329-375 (569)
410 COG3845 ABC-type uncharacteriz 96.9 0.0009 2E-08 69.3 4.7 117 220-347 5-132 (501)
411 PLN03073 ABC transporter F fam 96.9 0.00066 1.4E-08 74.2 3.8 48 220-268 178-226 (718)
412 TIGR01842 type_I_sec_PrtD type 96.9 0.00081 1.8E-08 70.7 4.4 44 234-277 332-378 (544)
413 COG4167 SapF ABC-type antimicr 96.9 0.00095 2E-08 61.8 4.2 39 233-271 26-65 (267)
414 TIGR01194 cyc_pep_trnsptr cycl 96.9 0.00085 1.9E-08 70.9 4.4 44 235-278 357-403 (555)
415 cd03297 ABC_ModC_molybdenum_tr 96.9 0.0012 2.5E-08 60.9 4.6 40 237-277 16-57 (214)
416 COG1117 PstB ABC-type phosphat 96.9 0.00074 1.6E-08 63.6 3.2 39 229-267 16-55 (253)
417 TIGR01187 potA spermidine/putr 96.9 0.00022 4.9E-09 70.5 -0.2 28 250-277 1-30 (325)
418 TIGR00958 3a01208 Conjugate Tr 96.9 0.00097 2.1E-08 72.6 4.6 45 234-278 495-542 (711)
419 COG2256 MGS1 ATPase related to 96.9 0.0028 6.1E-08 64.4 7.4 72 247-362 50-121 (436)
420 PRK10762 D-ribose transporter 96.8 0.00078 1.7E-08 70.2 3.5 44 234-277 266-312 (501)
421 COG1132 MdlB ABC-type multidru 96.8 0.0012 2.5E-08 69.9 4.6 45 232-276 341-388 (567)
422 PF13401 AAA_22: AAA domain; P 96.8 0.0031 6.7E-08 52.7 6.3 90 244-357 3-99 (131)
423 PRK11819 putative ABC transpor 96.8 0.0013 2.8E-08 69.7 4.8 39 233-271 337-376 (556)
424 TIGR01846 type_I_sec_HlyB type 96.8 0.0014 3E-08 71.1 5.1 47 234-280 471-520 (694)
425 TIGR02203 MsbA_lipidA lipid A 96.8 0.0012 2.6E-08 69.5 4.5 45 234-278 346-393 (571)
426 TIGR03015 pepcterm_ATPase puta 96.8 0.0032 6.8E-08 59.6 6.9 38 234-271 30-69 (269)
427 TIGR00954 3a01203 Peroxysomal 96.8 0.0012 2.5E-08 71.5 4.3 43 229-271 461-504 (659)
428 PRK10982 galactose/methyl gala 96.8 0.0011 2.5E-08 68.7 4.1 45 234-278 262-309 (491)
429 TIGR03719 ABC_ABC_ChvD ATP-bin 96.8 0.0013 2.9E-08 69.4 4.6 39 233-271 335-374 (552)
430 COG4148 ModC ABC-type molybdat 96.7 0.0019 4.2E-08 63.1 4.9 82 229-320 8-99 (352)
431 PF00004 AAA: ATPase family as 96.7 0.0026 5.6E-08 52.8 5.1 27 248-274 1-27 (132)
432 PRK15439 autoinducer 2 ABC tra 96.7 0.0014 3E-08 68.6 4.2 43 235-277 278-323 (510)
433 cd00544 CobU Adenosylcobinamid 96.7 0.0095 2.1E-07 53.8 9.0 86 248-361 2-89 (169)
434 PLN03130 ABC transporter C fam 96.7 0.0016 3.4E-08 77.1 4.7 62 221-282 1239-1304(1622)
435 COG0488 Uup ATPase components 96.7 0.0015 3.3E-08 69.0 4.1 47 224-271 8-55 (530)
436 COG1129 MglA ABC-type sugar tr 96.7 0.0019 4.2E-08 67.5 4.9 60 218-278 7-69 (500)
437 PF13173 AAA_14: AAA domain 96.7 0.0069 1.5E-07 51.5 7.3 34 245-278 2-36 (128)
438 PLN03232 ABC transporter C fam 96.6 0.0017 3.8E-08 76.2 4.7 58 223-280 1238-1299(1495)
439 PTZ00265 multidrug resistance 96.6 0.0022 4.7E-08 75.3 4.9 43 234-276 399-444 (1466)
440 TIGR00957 MRP_assoc_pro multi 96.6 0.002 4.4E-08 75.8 4.6 61 222-282 1287-1351(1522)
441 TIGR00955 3a01204 The Eye Pigm 96.6 0.002 4.4E-08 69.1 4.2 39 233-271 38-77 (617)
442 PF04665 Pox_A32: Poxvirus A32 96.5 0.0077 1.7E-07 57.6 7.6 23 247-269 15-37 (241)
443 KOG0055 Multidrug/pheromone ex 96.5 0.0042 9.1E-08 70.6 6.6 46 233-278 1003-1051(1228)
444 KOG0056 Heavy metal exporter H 96.5 0.0049 1.1E-07 64.3 6.5 61 220-280 538-601 (790)
445 PRK13409 putative ATPase RIL; 96.5 0.0028 6E-08 67.9 4.9 48 225-272 79-126 (590)
446 PRK10078 ribose 1,5-bisphospho 96.5 0.0026 5.6E-08 57.6 4.0 28 244-271 1-28 (186)
447 cd03283 ABC_MutS-like MutS-lik 96.5 0.0028 6E-08 58.5 4.1 26 242-267 22-47 (199)
448 PTZ00265 multidrug resistance 96.5 0.002 4.2E-08 75.6 3.8 39 233-271 1181-1220(1466)
449 COG4586 ABC-type uncharacteriz 96.5 0.002 4.4E-08 62.7 3.2 45 234-278 38-85 (325)
450 PF00154 RecA: recA bacterial 96.5 0.006 1.3E-07 60.7 6.6 105 227-355 32-141 (322)
451 PLN03211 ABC transporter G-25; 96.5 0.0022 4.9E-08 69.4 3.8 40 232-271 80-120 (659)
452 PF13671 AAA_33: AAA domain; P 96.5 0.039 8.5E-07 46.8 10.8 23 248-270 2-24 (143)
453 KOG0058 Peptide exporter, ABC 96.4 0.0044 9.5E-08 66.9 5.8 39 233-271 481-520 (716)
454 KOG0055 Multidrug/pheromone ex 96.4 0.0032 6.9E-08 71.5 4.9 46 233-278 366-414 (1228)
455 COG4161 ArtP ABC-type arginine 96.4 0.0025 5.4E-08 58.0 3.2 90 223-322 6-107 (242)
456 PRK13409 putative ATPase RIL; 96.4 0.0032 7E-08 67.4 4.6 37 235-271 354-391 (590)
457 COG4674 Uncharacterized ABC-ty 96.4 0.0014 3E-08 61.2 1.4 84 230-318 15-102 (249)
458 PRK08118 topology modulation p 96.4 0.0031 6.8E-08 56.6 3.6 26 246-271 2-27 (167)
459 cd01125 repA Hexameric Replica 96.4 0.032 7E-07 52.4 10.6 23 245-267 1-23 (239)
460 COG4152 ABC-type uncharacteriz 96.3 0.0034 7.3E-08 60.4 3.8 82 224-316 7-91 (300)
461 cd01124 KaiC KaiC is a circadi 96.3 0.021 4.5E-07 50.8 8.7 45 248-292 2-48 (187)
462 PF00931 NB-ARC: NB-ARC domain 96.3 0.0072 1.6E-07 57.5 5.9 43 243-285 17-63 (287)
463 PRK07261 topology modulation p 96.3 0.004 8.7E-08 55.9 3.9 25 246-270 1-25 (171)
464 PRK05800 cobU adenosylcobinami 96.3 0.021 4.5E-07 51.6 8.5 87 247-360 3-91 (170)
465 cd03278 ABC_SMC_barmotin Barmo 96.3 0.0041 8.9E-08 57.2 3.9 39 230-269 6-46 (197)
466 COG1101 PhnK ABC-type uncharac 96.3 0.0035 7.6E-08 59.3 3.4 46 234-279 20-68 (263)
467 PF13207 AAA_17: AAA domain; P 96.3 0.003 6.6E-08 52.3 2.6 24 247-270 1-24 (121)
468 COG0194 Gmk Guanylate kinase [ 96.2 0.022 4.7E-07 52.5 8.2 87 244-352 3-101 (191)
469 KOG0060 Long-chain acyl-CoA tr 96.2 0.0044 9.5E-08 65.5 3.8 38 232-269 447-485 (659)
470 COG4598 HisP ABC-type histidin 96.2 0.0021 4.5E-08 59.4 1.3 114 234-366 20-155 (256)
471 TIGR01271 CFTR_protein cystic 96.1 0.0053 1.2E-07 72.2 4.8 48 233-280 1232-1281(1490)
472 PRK00300 gmk guanylate kinase; 96.1 0.0046 1E-07 56.3 3.3 28 243-270 3-30 (205)
473 COG2874 FlaH Predicted ATPases 96.1 0.042 9.1E-07 51.9 9.6 118 224-358 16-136 (235)
474 PF05496 RuvB_N: Holliday junc 96.1 0.0086 1.9E-07 56.9 5.1 45 247-291 52-97 (233)
475 COG4778 PhnL ABC-type phosphon 96.1 0.0081 1.8E-07 55.1 4.7 39 233-271 24-63 (235)
476 COG4178 ABC-type uncharacteriz 96.1 0.005 1.1E-07 65.8 3.9 40 230-269 403-443 (604)
477 TIGR00235 udk uridine kinase. 96.0 0.0046 1E-07 56.9 2.9 28 243-270 4-31 (207)
478 PF05729 NACHT: NACHT domain 96.0 0.014 3E-07 50.2 5.6 22 247-268 2-23 (166)
479 TIGR03263 guanyl_kin guanylate 96.0 0.0053 1.2E-07 54.6 3.1 25 245-269 1-25 (180)
480 PRK09825 idnK D-gluconate kina 96.0 0.0065 1.4E-07 55.0 3.6 28 244-271 2-29 (176)
481 PRK05973 replicative DNA helic 96.0 0.044 9.4E-07 52.3 9.3 53 241-293 60-114 (237)
482 PRK13342 recombination factor 95.9 0.019 4.1E-07 58.7 7.2 47 246-292 37-83 (413)
483 PF13481 AAA_25: AAA domain; P 95.9 0.015 3.2E-07 52.1 5.6 51 242-292 29-91 (193)
484 cd01130 VirB11-like_ATPase Typ 95.9 0.0065 1.4E-07 55.1 3.2 37 236-272 15-52 (186)
485 PRK13477 bifunctional pantoate 95.9 0.011 2.4E-07 62.3 5.3 41 229-270 268-309 (512)
486 PLN00020 ribulose bisphosphate 95.9 0.025 5.5E-07 57.5 7.6 31 247-277 150-180 (413)
487 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.04 8.6E-07 52.0 8.5 34 234-267 20-53 (222)
488 TIGR02322 phosphon_PhnN phosph 95.8 0.0071 1.5E-07 53.9 3.2 26 245-270 1-26 (179)
489 COG0396 sufC Cysteine desulfur 95.8 0.0067 1.5E-07 57.7 3.0 45 234-278 18-67 (251)
490 COG4133 CcmA ABC-type transpor 95.8 0.011 2.5E-07 54.7 4.3 43 238-280 21-65 (209)
491 COG0468 RecA RecA/RadA recombi 95.8 0.015 3.3E-07 56.8 5.4 112 226-360 39-156 (279)
492 PRK05480 uridine/cytidine kina 95.8 0.012 2.6E-07 54.0 4.5 28 243-270 4-31 (209)
493 cd01853 Toc34_like Toc34-like 95.8 0.016 3.5E-07 55.5 5.5 25 245-269 31-55 (249)
494 COG4618 ArpD ABC-type protease 95.7 0.012 2.6E-07 61.5 4.7 57 235-291 351-410 (580)
495 PRK05541 adenylylsulfate kinas 95.7 0.08 1.7E-06 47.1 9.5 30 241-270 3-32 (176)
496 PF13191 AAA_16: AAA ATPase do 95.7 0.02 4.4E-07 50.4 5.4 31 239-269 18-48 (185)
497 cd00227 CPT Chloramphenicol (C 95.7 0.077 1.7E-06 47.4 9.2 28 244-271 1-28 (175)
498 PF01637 Arch_ATPase: Archaeal 95.6 0.0058 1.3E-07 55.4 1.9 109 243-358 18-131 (234)
499 PLN03232 ABC transporter C fam 95.6 0.0089 1.9E-07 70.4 3.8 37 235-271 632-669 (1495)
500 PRK00411 cdc6 cell division co 95.6 0.049 1.1E-06 54.6 8.5 95 243-358 53-151 (394)
No 1
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=5.7e-94 Score=738.18 Aligned_cols=349 Identities=81% Similarity=1.296 Sum_probs=337.5
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLG 99 (369)
++|+|.+|+|++++++|++++++||+|+++++.+.|||+++++|.+++|+|++++||++|+.|..||++++|++|++|||
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~~~~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG 80 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILG 80 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEECCCceEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhh
Confidence 47999999999999999889999999999755699999999999999999999999999999999999999999999999
Q ss_pred eeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceE
Q 017581 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (369)
Q Consensus 100 RVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~ 179 (369)
|||||+|||||+.++..+..|++||+++++++.+++|+|.|..+++||.|.+|||+|+|+|++++.|+||+||+..|+|+
T Consensus 81 ~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~ 160 (591)
T TIGR01042 81 NIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTIT 160 (591)
T ss_pred cccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEE
Confidence 99999999999987777788999999999999999999999669999999999999999999999999999999999999
Q ss_pred EeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCChH
Q 017581 180 YVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259 (369)
Q Consensus 180 ~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKs 259 (369)
+|+++|+||++++|++++++|..++++|.|+||+|.++|+++|.++++||.||+|+||+|+||++|||++|||++|||||
T Consensus 161 ~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT 240 (591)
T TIGR01042 161 YIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 240 (591)
T ss_pred EEccCCCceeeeEEEEEeeCCceeeeccceeeecccCCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHH
Confidence 99999999999999999989999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHH
Q 017581 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEY 339 (369)
Q Consensus 260 tLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEy 339 (369)
+|+.||++++++|++||++||||++|++||+++||++++|. ++++..+|+||++|+||||+|+++|++++|+|+|+|||
T Consensus 241 ~l~~~lak~s~aDviVyvg~GERG~Em~evle~fp~l~dp~-~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEY 319 (591)
T TIGR01042 241 VISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEV-DGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEY 319 (591)
T ss_pred HHHHHHHhccCcCEEEEEEEeechHHHHHHHHHhHhhcccc-cccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877 33456889999999999999999999999999999999
Q ss_pred HHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 340 FRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 340 fr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|||+|+|||||+||+||||+|+||||++||
T Consensus 320 fRD~G~~Vll~~DS~tR~AeAlREIsl~lg 349 (591)
T TIGR01042 320 FRDMGYNVSMMADSTSRWAEALREISGRLA 349 (591)
T ss_pred HHhcCCCEEEEecChHHHHHHHHHHHhccC
Confidence 999999999999999999999999999997
No 2
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=8.7e-92 Score=724.47 Aligned_cols=342 Identities=58% Similarity=1.031 Sum_probs=330.9
Q ss_pred eEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcccccee
Q 017581 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNI 101 (369)
Q Consensus 22 G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLGRV 101 (369)
|+|.+|+|++++++|+.++++||+|+|.++.+.|||+++++|.+.+|+|++++||++|++|.+||++++|++|++|||||
T Consensus 2 G~I~~V~Gpvv~a~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGrV 81 (578)
T TIGR01043 2 GRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSI 81 (578)
T ss_pred CEEEEEECCEEEEecCCCCCcCCEEEECCCcEEEEEEEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcce
Confidence 89999999999999998899999999975569999999999999999999999999999999999999999999999999
Q ss_pred ecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceEEe
Q 017581 102 FDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYV 181 (369)
Q Consensus 102 lDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~~~ 181 (369)
||++|||||+.++..+ .|++||+++++++.+++|+|+|. +++||.|.+||++|+|+|++++.|+||+||+..|+|+||
T Consensus 82 ~DgigrPLd~~~~~~g-~~i~rg~~~~~l~~~~~w~f~p~-~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i 159 (578)
T TIGR01043 82 YDGVQRPLDVLKEKTG-DFIARGVDAPGLDRDKKWHFKPT-VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI 159 (578)
T ss_pred eccCCccccCcccccc-cccccCccCCCcCcccccccccc-cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe
Confidence 9999999998766555 49999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCChHHH
Q 017581 182 APAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI 261 (369)
Q Consensus 182 ~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstL 261 (369)
+|+|+||++++|++++.+|. ++++|.|+||+|.++|+++|.++++||.||+|+||+|+||+||||++|||++|||||+|
T Consensus 160 ~~~g~~~~~~~v~~~~~~g~-~~~~~~~~wPvr~p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l 238 (578)
T TIGR01043 160 AEEGDYTVEDTIAVVDTDGD-EEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVT 238 (578)
T ss_pred ccCCCceeeeeEEEEecCCc-eeeeeeeecccccCCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHHH
Confidence 99999999999999998888 99999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHH
Q 017581 262 SQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR 341 (369)
Q Consensus 262 l~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr 341 (369)
+.||++++++|+|||++||||++|+++|+++|+++++|. .+..+|+||++|+||||+|+++|++++|+|+|+|||||
T Consensus 239 ~~~lak~~~adivVyvg~GERG~E~~e~le~f~~l~dp~---~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfR 315 (578)
T TIGR01043 239 QHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPK---TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFR 315 (578)
T ss_pred HHHHHhcCCCCEEEEEEeccChHHHHHHHHHhHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888765 56789999999999999999999999999999999999
Q ss_pred HCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 342 DMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 342 ~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|||||||+||+||||+|+||||++||
T Consensus 316 D~G~~Vllm~DS~sR~AeAlREIs~~lg 343 (578)
T TIGR01043 316 DMGYDVALMADSTSRWAEAMREISGRLE 343 (578)
T ss_pred HCCCCEEEEecChhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987
No 3
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=9.9e-92 Score=724.97 Aligned_cols=345 Identities=59% Similarity=1.000 Sum_probs=333.3
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLG 99 (369)
.+|+|++|+|++++++|+.++++||+|.+.++.+.|||+++++|.+.+|+|++|+||++|++|.+||++++|++|++|||
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLG 82 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLG 82 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCCCccCEEEECCCcEEEEEEEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcC
Confidence 57999999999999999988999999999766699999999999999999999999999999999999999999999999
Q ss_pred eeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceE
Q 017581 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (369)
Q Consensus 100 RVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~ 179 (369)
||||++|||||+.++..| .|++||+++++++.+++|+|+|. +++||.|.+||++|+|+|+.+++|+||+||+..|+++
T Consensus 83 rv~Dg~grPLd~~~~~~~-~~i~rG~~~~~l~~~~~w~f~p~-~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~ 160 (586)
T PRK04192 83 SIFDGIQRPLDELAEKSG-DFLERGVYVPALDREKKWEFTPT-VKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVK 160 (586)
T ss_pred CeecCCCCcccccchhcc-cccccCCCCCCCCcccccceecc-cccCCEecCCceEEEEecCCceeeeeecCCCCceEEE
Confidence 999999999999876664 69999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EeccCCcccccceEEEEEe-ecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCCh
Q 017581 180 YVAPAGQYSLKDTVLELEF-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (369)
Q Consensus 180 ~~~~~g~~~~~~~v~~~~~-~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GK 258 (369)
||+|+|+||++|+|+++++ +|..++++|.|+|||+.++|..+|..+++||.||+|+||+|+||++|||++|||++||||
T Consensus 161 ~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GK 240 (586)
T PRK04192 161 EIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGK 240 (586)
T ss_pred EEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcccccCCCCCccccCchhhhcccccccCCeEEEecCCCCCH
Confidence 9999999999999999985 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHH
Q 017581 259 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 338 (369)
Q Consensus 259 stLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAE 338 (369)
|+|+.+|++++++|++||++||||++|+.+|+++|+++.+|. .+.++|+||++|+||||+|+++|++++|+|+|+||
T Consensus 241 Tvl~~~iak~a~adivVyvg~GERg~E~~e~l~ef~~l~dp~---~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAE 317 (586)
T PRK04192 241 TVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELIDPK---TGRPLMERTVLIANTSNMPVAAREASIYTGITIAE 317 (586)
T ss_pred HHHHHHHHhcCCCCEEEEEEcCcChHHHHHHHHHHHhhcccc---cccccceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 56789999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 339 YFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 339 yfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||||+|||||+|+||+||||+|+||||++||
T Consensus 318 YfRd~G~~Vllm~DStSR~AeAlREIS~~l~ 348 (586)
T PRK04192 318 YYRDMGYDVLLMADSTSRWAEALREISGRLE 348 (586)
T ss_pred HHHHCCCCEEEEecChHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999986
No 4
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=5.6e-82 Score=634.61 Aligned_cols=343 Identities=57% Similarity=0.975 Sum_probs=331.3
Q ss_pred EeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccce
Q 017581 21 YGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (369)
Q Consensus 21 ~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLGR 100 (369)
.|+|.+|+|+++.++|+.+++++|+|++++.++.||||.+++|++.+|+|++|.||++|+.|.+||+|+++.+|++||+.
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~ 81 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVGEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKS 81 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEcCCceeEEEEEEeCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhh
Confidence 59999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCC-CCceE
Q 017581 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA-MGKVT 179 (369)
Q Consensus 101 VlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~-~~~v~ 179 (369)
|+||++||||...+..| .|+.||+++|+||++++|+|+|. +++||+|.+||++|+|+|++++ |+|++||+. .|+|+
T Consensus 82 IyDGiQrPL~~i~e~sg-~Fi~RGv~~p~Ldr~~kW~F~P~-~~~Gd~V~~GdvlGtV~Et~~i-~~imvpp~~~~~~v~ 158 (588)
T COG1155 82 IYDGIQRPLDVIKETSG-DFIARGLNPPALDRKKKWDFVPA-VKKGDTVYPGDVLGTVQETSLI-THRIMVPPGVSGKVT 158 (588)
T ss_pred hhhhccChHHHHHHHhh-hHhhcCCCCCCCCcccccccccc-cccCCEeccCceEEEeccCCce-EEEEeCCCCCceEEE
Confidence 99999999999888888 89999999999999999999999 5999999999999999999999 888888885 56799
Q ss_pred EeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCChH
Q 017581 180 YVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259 (369)
Q Consensus 180 ~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKs 259 (369)
+++++|+||+|++||++++++-.++++|.|+||||.+.|..+++++++||.||+|+||+|||+.||+..+|.||.|||||
T Consensus 159 ~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKT 238 (588)
T COG1155 159 WIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKT 238 (588)
T ss_pred EEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCccccccCCCCCcccccceeehhhcccccCccccccCCCCCCcE
Confidence 99999999999999999876449999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHH
Q 017581 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEY 339 (369)
Q Consensus 260 tLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEy 339 (369)
++..++++++++|+|||++||||++|+.|++.+||++++|. ++..+|++|++++||+++|.+.|+.+.|+|.|+|||
T Consensus 239 V~qh~laK~sdadiVVyigCGERGNEmtevL~eFPeL~Dp~---tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY 315 (588)
T COG1155 239 VSQHTLSKLADGDIVIYVGCGERGNEMTEVLQEFPELKDPN---TGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEY 315 (588)
T ss_pred ehhhhhhhhccCCEEEEEecCCccchHHHHHHhCccccCCC---CCCcccceeeEeecCccchHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999977 778899999999999999999999999999999999
Q ss_pred HHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 340 FRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 340 fr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|||+|+||+++.||++|||+|+||||++|+
T Consensus 316 ~RDmGy~v~lmADSTSRWAEAlREisgRle 345 (588)
T COG1155 316 YRDMGYDVALMADSTSRWAEALREISGRLE 345 (588)
T ss_pred HHhhhhhhHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999985
No 5
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=6.5e-82 Score=616.07 Aligned_cols=366 Identities=74% Similarity=1.191 Sum_probs=354.2
Q ss_pred chhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeE
Q 017581 3 SVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPV 82 (369)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V 82 (369)
-..+..+..+..+.+...+|+|-+|+|+++.++.+.+++++|+|+++..++.||||.+++|.+.+|+|++|+|+..|++|
T Consensus 3 ~~~~~~~~~~~~e~~es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh~~LvGEiIrlegD~aTIQVYEeTsG~tVgDpv 82 (618)
T KOG1352|consen 3 NARKSILRLSLDEEEESEYGRVYSVSGPVVVAENMAGCAMYELVRVGHDELVGEIIRLEGDMATIQVYEETSGLTVGDPV 82 (618)
T ss_pred hhhhhhhhccccchhhhccceEEeccCceEehhcccchHHHHHHHcchHhhhhheeEecCceeEEEEEeccCCcccCCch
Confidence 34566677788888899999999999999999999999999999998778999999999999999999999999999999
Q ss_pred EEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecc
Q 017581 83 LRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (369)
Q Consensus 83 ~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~ 162 (369)
.+||+|+++.+|++++|.+|||.+|||....+..++.|++||++.|+|+++.+|.|.|.++++||.+.+||++|.|+||+
T Consensus 83 lrTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENs 162 (618)
T KOG1352|consen 83 LRTGKPLSVELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENS 162 (618)
T ss_pred hhcCCcceEeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccc
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccc
Q 017581 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPS 242 (369)
Q Consensus 163 ~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi 242 (369)
+++|+|++||..+|+|.||||.|+|++|++|.|+|.+|.+++++|.|.||||.++|+-+.++.+.||.||.|++|+|+||
T Consensus 163 li~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfPc 242 (618)
T KOG1352|consen 163 LIKHKILLPPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFPC 242 (618)
T ss_pred hhhceeecCCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcchhhccCCCCcccccchHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 322 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~ 322 (369)
..|+..+|.|..|||||++.+.+.++.+.|++||++||||++|+.|++++||++++.. ++..+..|+||++|+||+++|
T Consensus 243 VqGGTtaIPGAFGCGKTVISQsLSKYSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev-~G~~esiMKRT~LVANTSNMP 321 (618)
T KOG1352|consen 243 VQGGTTAIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMSEVLMDFPELTMEV-DGKTESIMKRTALVANTSNMP 321 (618)
T ss_pred hcCCccccCcccccchHHHHHHHhhccCCCeEEEEcccccchhHHHHHHhChhhEEec-CCcchhhhhhhhhhhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999865 667788999999999999999
Q ss_pred HHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 323 VAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 323 ~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
.+.|..+.|++.|+||||||+||||-.|.||.+|||+|+|||||||+
T Consensus 322 VAAREASIYTGITlsEYfRDmG~nVsMmADStSRWAEALREISGRLa 368 (618)
T KOG1352|consen 322 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLA 368 (618)
T ss_pred hhhhhhhhhhcccHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999985
No 6
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=8e-79 Score=664.45 Aligned_cols=237 Identities=53% Similarity=0.939 Sum_probs=229.3
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLG 99 (369)
.+|+|++|.|++|+++|+..+++||+|.|.++.+.|||+++++|.+.+|||++++||++|++|.++|++++|++|++|||
T Consensus 3 ~~G~V~~V~G~lv~a~g~~~~~iGE~v~I~~~~l~gEVIg~~~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~~LLG 82 (1017)
T PRK14698 3 AKGRIIRVTGPLVIADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLLT 82 (1017)
T ss_pred CceEEEEEEcCEEEEecCcCCCCCCEEEECCCcEEEEEEEEeCCEEEEEECCCCCCCCCCCEEEEcCCcceeecCHHHhh
Confidence 47999999999999999878999999999754589999999999999999999999999999999999999999999999
Q ss_pred eeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceE
Q 017581 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (369)
Q Consensus 100 RVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~ 179 (369)
|||||+||||+...+..++ |++||+++|+|+++++|+|.|. +++||.|.+|||+|+|+|++++.|+||+||...|+|+
T Consensus 83 RV~DGlGrPL~~~~~~~~~-~i~~g~~~~~l~~~~~w~f~p~-~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~ 160 (1017)
T PRK14698 83 SIYDGIQRPLEVIREKSGD-FIARGISAPALPRDKKWHFIPK-VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIV 160 (1017)
T ss_pred cccCCCCChHHHHHHHhcc-cccCCCCCCCCCCCCeeeeEee-eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEE
Confidence 9999999999987777776 9999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EeccCCcccccceEEEEEe-ecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCCh
Q 017581 180 YVAPAGQYSLKDTVLELEF-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (369)
Q Consensus 180 ~~~~~g~~~~~~~v~~~~~-~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GK 258 (369)
|||++|+|+++++|+++++ +|..++++|.|+||||.|+|+.++.+++.||.||+|+||+|||+.+|+..+|+|++||||
T Consensus 161 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G~GK 240 (1017)
T PRK14698 161 EIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGK 240 (1017)
T ss_pred EEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCCCCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCCcCc
Confidence 9999999999999999996 799999999999999999999999999999999999999999999999999999999999
No 7
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=3.9e-79 Score=599.44 Aligned_cols=278 Identities=69% Similarity=1.166 Sum_probs=269.3
Q ss_pred ceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeeccccccc
Q 017581 88 PLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHH 167 (369)
Q Consensus 88 ~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~ 167 (369)
++++.+|++|||.||||++|||+...+..+++|++||+++++||++++|+|+|. +++||.|.+||++|+|+|+++++|+
T Consensus 1 ~lsveLgPGll~~i~DGiqrpL~~i~~~~~~~fi~rg~~~~~ld~~~~w~f~p~-~k~gd~v~~gd~~g~v~e~~~~~h~ 79 (369)
T cd01134 1 PLSVELGPGLLGSIYDGIQRPLDKIAEITKGIFIPRGVNVPALDRDKKWDFKPL-VKVGDHVTGGDILGTVPENSLIEHK 79 (369)
T ss_pred CcceEeccchhccccCcccCCHHHHHHhhcCCcccCCCCCCCCCCCCeeeeEec-cccCCCccCCCEEEEEecCCceeeE
Confidence 578999999999999999999998876566789999999999999999999998 8999999999999999999999999
Q ss_pred ccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCe
Q 017581 168 VALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGT 247 (369)
Q Consensus 168 i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr 247 (369)
||+||+..|+|++|+|+|+|+++++|++++++|..++++|.|+||++.++|..+|..+++||.||||+||+|+||++|||
T Consensus 80 imvp~~~~g~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~Pv~~~~P~~~r~~~~~pL~TGirvID~l~Pi~kGqr 159 (369)
T cd01134 80 IMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNEPLLTGQRVLDTLFPVVKGGT 159 (369)
T ss_pred EeCCCCCCeEEEEEecCCCeeEEEEEEEEEeCCeEeccccceeeecccCCCccccCCCCCchhccchhhhccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999877999999999999999999999999999
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHh
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~ 327 (369)
++|||++|||||+|+.+|++|+++|++||++||||++|+.+|+++|+++++|. .+.++|+||++|+||+|+|+++|+
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~---~~~~~m~rtvlV~nts~~p~~~R~ 236 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPV---TGEPLMKRTVLIANTSNMPVAARE 236 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCCCCCEEEEEEeCCChHHHHHHHHHHHhhcccc---ccCCccceEEEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999888776 678899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 328 ASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 328 ~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+++|+|+|+||||||+|+|||+|+||+||||+|+||||++||
T Consensus 237 ~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l~ 278 (369)
T cd01134 237 ASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLE 278 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 8
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=7.1e-70 Score=555.57 Aligned_cols=267 Identities=28% Similarity=0.421 Sum_probs=250.4
Q ss_pred CchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCe
Q 017581 2 PSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (369)
Q Consensus 2 ~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~ 81 (369)
++.+++++++|+.+++.+.+|+|++|.|++++++|++++++||+|+|. +.+.|||++++++.+.+++|+++.||+.|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~-~~~~g~Vi~l~~~~v~~~~l~~~~gi~~G~~ 87 (497)
T TIGR03324 9 FQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP-GGLLGIAFNVDEDEVGVVLLGEYSHLQAGDE 87 (497)
T ss_pred HHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC-CCcEEEEEEEcCCeEEEEEecCCcCCcCCCE
Confidence 467899999999999999999999999999999999999999999996 4589999999999999999999999999999
Q ss_pred EEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeec
Q 017581 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (369)
Q Consensus 82 V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~ 161 (369)
|.+||++++||||++|||||+|++|+|||+.++ +.
T Consensus 88 V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~---------------~~------------------------------ 122 (497)
T TIGR03324 88 VERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGP---------------LA------------------------------ 122 (497)
T ss_pred EEECCCCCeEECCHhhCcCEECCCCCCcCCCCC---------------CC------------------------------
Confidence 999999999999999999999999999998421 00
Q ss_pred ccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccc
Q 017581 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALF 240 (369)
Q Consensus 162 ~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~ 240 (369)
..++||++.++ ++++|+++++||.||||+||+|+
T Consensus 123 ---------------------------------------------~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~ 157 (497)
T TIGR03324 123 ---------------------------------------------SSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALI 157 (497)
T ss_pred ---------------------------------------------CCceeehhccCcCccccCCCCchhhcCCEEEeccC
Confidence 01467887666 49999999999999999999999
Q ss_pred cccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t 318 (369)
||++|||++|||++|||||+| +.||++|+++|+ |||++||||++|+++|+++| ++.++|+||++|+||
T Consensus 158 pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l----------~~~~~l~~tvvV~at 227 (497)
T TIGR03324 158 PIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANL----------REHGAMDYTIVVVTE 227 (497)
T ss_pred CcccCCEEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHh----------hhcCCcceeEEEEeC
Confidence 999999999999999999999 569999999997 99999999999999999986 788999999999999
Q ss_pred CCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 319 ~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+||++|+++||+|+|+|||||++|+|||++||||||||+||||||.+||
T Consensus 228 sd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lg 278 (497)
T TIGR03324 228 GNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLR 278 (497)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999986
No 9
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-68 Score=527.76 Aligned_cols=258 Identities=29% Similarity=0.457 Sum_probs=231.7
Q ss_pred CCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCC---c-EEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcC
Q 017581 11 TFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHD---N-LIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTH 86 (369)
Q Consensus 11 ~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~---~-~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg 86 (369)
.+........+|+|++|+|.++++.| +++++||+|+|... . ..|||++|++++++++||++..|+.+|++|.+++
T Consensus 15 ~~~~~~~~~~~G~v~~v~G~~lea~g-~~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~ 93 (441)
T COG1157 15 ALRNTDPYKRRGRLTRVTGLLLEAVG-PQARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPGAEVVPTG 93 (441)
T ss_pred hhccCCcceEEEEEEEEeeeEEEEec-CCCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCCCEEEecC
Confidence 33343447889999999999999997 68999999999632 1 3999999999999999999999999999999999
Q ss_pred CceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccc
Q 017581 87 KPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQH 166 (369)
Q Consensus 87 ~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~ 166 (369)
+++++|+|++|||||+|++|+|||+.+. ++.
T Consensus 94 ~~~~v~~g~~lLGRVld~~G~plDg~~~---------------~~~---------------------------------- 124 (441)
T COG1157 94 RPLSVPVGDALLGRVLDGLGRPLDGGGL---------------PDG---------------------------------- 124 (441)
T ss_pred CccccccChhhhhhhhccCCCcCcCCCC---------------CCC----------------------------------
Confidence 9999999999999999999999998421 100
Q ss_pred cccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCC-CCccccccccceeccCceeeeccccccCC
Q 017581 167 HVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLG 245 (369)
Q Consensus 167 ~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~-~~~~~r~~~~~~l~TGi~aID~l~pi~~G 245 (369)
.++.|+..+ ++++.|++++++|.||||+||+|+|||+|
T Consensus 125 -----------------------------------------~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~G 163 (441)
T COG1157 125 -----------------------------------------TERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKG 163 (441)
T ss_pred -----------------------------------------cccccccCCCCCchhcccccccccccceeeecccccccC
Confidence 022344433 34899999999999999999999999999
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~ 325 (369)
||+|||++||+||||||.||++++.+|++|+++||||+|||+||++.- .+...++|+|+|++|||+||++
T Consensus 164 QRiGIFAgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~----------Lg~egl~rsViVvATSD~s~l~ 233 (441)
T COG1157 164 QRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKD----------LGEEGLKRSVVVVATSDESALM 233 (441)
T ss_pred ceeEEEecCCCcHHHHHHHHhccccCCEEEEEEeeccchhHHHHHHHh----------cchhhccceEEEEECCCCCHHH
Confidence 999999999999999999999999999999999999999999999972 4566799999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 326 r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+.++++|++|||||||||+||||||||+||||+|+|||+...|
T Consensus 234 R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~G 277 (441)
T COG1157 234 RLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAG 277 (441)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998765
No 10
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=9.6e-68 Score=541.54 Aligned_cols=266 Identities=30% Similarity=0.442 Sum_probs=248.2
Q ss_pred chhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeE
Q 017581 3 SVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPV 82 (369)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V 82 (369)
+.+++++++|+.+...+.+|+|++|.|++++++|++++++||+|+|.+ +..|+|++++++.+.+++|++++||+.|+.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~~-~~~g~V~~l~~~~v~~~~l~~~~gi~~G~~V 88 (502)
T PRK13343 10 ARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFEG-GSRGFAFNLEEELVGAVLLDDTADILAGTEV 88 (502)
T ss_pred HHHHHHHhcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEECC-CcEEEEEEecCCeEEEEEeeCCCCCCCCCEe
Confidence 578999999999999999999999999999999999999999999964 4899999999999999999999999999999
Q ss_pred EEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecc
Q 017581 83 LRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (369)
Q Consensus 83 ~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~ 162 (369)
++||++++||||++|||||+|++|+|||+.++. ..
T Consensus 89 ~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i---------------~~------------------------------ 123 (502)
T PRK13343 89 RRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL---------------QA------------------------------ 123 (502)
T ss_pred EecCCcceeecCHHhcCCEECCCCCcccCCCCC---------------CC------------------------------
Confidence 999999999999999999999999999984311 00
Q ss_pred cccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeecccc
Q 017581 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFP 241 (369)
Q Consensus 163 ~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~p 241 (369)
.++||+..++ ++++|+++++||.||||+||+|+|
T Consensus 124 ---------------------------------------------~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~p 158 (502)
T PRK13343 124 ---------------------------------------------TARRPLERPAPAIIERDFVTEPLQTGIKVVDALIP 158 (502)
T ss_pred ---------------------------------------------CceecccCCCcChhhcCCCCcccccCCceeccccc
Confidence 1356776544 489999999999999999999999
Q ss_pred ccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCC
Q 017581 242 SVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
|++|||++|||++|+|||+| +.+|++|+++|+ |||++||||++|+++|++++ ++.++|+||+||+||+
T Consensus 159 igrGQR~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~l----------~~~~~l~~tvvV~ats 228 (502)
T PRK13343 159 IGRGQRELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETL----------REHGALEYTTVVVAEA 228 (502)
T ss_pred cccCCEEEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEeccChHHHHHHHHHH----------HhcCccceeEEEEecc
Confidence 99999999999999999999 679999999998 69999999999999999986 7889999999999999
Q ss_pred CCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 320 ~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+||++|+++||+|+++|||||++|+|||+++|||||||+||||||.+||
T Consensus 229 d~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~ 278 (502)
T PRK13343 229 SDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLR 278 (502)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999986
No 11
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=1.1e-67 Score=542.77 Aligned_cols=267 Identities=27% Similarity=0.390 Sum_probs=247.5
Q ss_pred CchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCe
Q 017581 2 PSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (369)
Q Consensus 2 ~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~ 81 (369)
++.+++++++|+.+++.+++|+|++|.|++++++|+.++++||+|+|. ++..|+|++++++.+.+++|+++.||+.|+.
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~G~~ 86 (501)
T TIGR00962 8 SELIKQEIKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFE-GGVQGIALNLEEDSVGAVIMGDYSNIREGST 86 (501)
T ss_pred HHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC-CCeEEEEEEecCCeEEEEEecCCcCCCCCCe
Confidence 357899999999999999999999999999999998899999999996 4489999999999999999999999999999
Q ss_pred EEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeec
Q 017581 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (369)
Q Consensus 82 V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~ 161 (369)
|.+||++++||+|++|||||+|++|+|||+.++..+
T Consensus 87 V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~-------------------------------------------- 122 (501)
T TIGR00962 87 VKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIDS-------------------------------------------- 122 (501)
T ss_pred eEecCCccEEecChHhcCCEeCCCCCeeCCCCCcCC--------------------------------------------
Confidence 999999999999999999999999999998421100
Q ss_pred ccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccc
Q 017581 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALF 240 (369)
Q Consensus 162 ~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~ 240 (369)
..+||+..++ ++++|+++++||.||||+||+|+
T Consensus 123 ----------------------------------------------~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~ 156 (501)
T TIGR00962 123 ----------------------------------------------DEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMI 156 (501)
T ss_pred ----------------------------------------------CCceeeecCCCChhhcCCcCceeccCCceeeccC
Confidence 0234665443 48999999999999999999999
Q ss_pred cccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t 318 (369)
||++|||++|||++|+|||+| +.+|++++++|+ |||++||||++|+++|+++| ++.++|+||++|+||
T Consensus 157 pigrGQr~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~----------~~~~~l~~tvvV~at 226 (501)
T TIGR00962 157 PIGRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKL----------EEHGAMDYTIVVAAT 226 (501)
T ss_pred CcccCCEEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHH----------HhcCccceeEEEEec
Confidence 999999999999999999999 579999999998 69999999999999999986 678999999999999
Q ss_pred CCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 319 ~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+||++|+++||+|+|+||||||+|+||||++|||||||+||||||.+||
T Consensus 227 sd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lg 277 (501)
T TIGR00962 227 ASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLR 277 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999986
No 12
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1.2e-67 Score=542.70 Aligned_cols=266 Identities=25% Similarity=0.388 Sum_probs=248.2
Q ss_pred chhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeE
Q 017581 3 SVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPV 82 (369)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V 82 (369)
+.+++++++|+..++.+.+|+|++|.|++++++|++++++||+|+|. +++.|+|+++++|.+.+++|++++||+.|+.|
T Consensus 10 ~~~~~~i~~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~g~~V 88 (502)
T PRK09281 10 AIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFP-GGVYGIALNLEEDNVGAVILGDYEDIKEGDTV 88 (502)
T ss_pred HHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEEC-CCcEEEEEEEcCCeEEEEEecCcccccCCCee
Confidence 57899999999999999999999999999999999899999999997 44899999999999999999999999999999
Q ss_pred EEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecc
Q 017581 83 LRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (369)
Q Consensus 83 ~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~ 162 (369)
.+||++++||||++|||||+|++|+|||+.++. ..
T Consensus 89 ~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~---------------~~------------------------------ 123 (502)
T PRK09281 89 KRTGRILEVPVGEALLGRVVNPLGQPIDGKGPI---------------EA------------------------------ 123 (502)
T ss_pred eecCCceEEecCHHhcCCEEccCCCCcCCCCCC---------------CC------------------------------
Confidence 999999999999999999999999999984210 00
Q ss_pred cccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeecccc
Q 017581 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFP 241 (369)
Q Consensus 163 ~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~p 241 (369)
.++||+..++ ++++|+++++||.|||++||+|+|
T Consensus 124 ---------------------------------------------~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~p 158 (502)
T PRK09281 124 ---------------------------------------------TETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIP 158 (502)
T ss_pred ---------------------------------------------CceecccCCCcCccccCCccceeecCCeeeecccc
Confidence 1356776544 589999999999999999999999
Q ss_pred ccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCC
Q 017581 242 SVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
|++|||++|||++|+|||+| +.+|++|+++|+ |||++||||++|+++|+++| ++.++|+||++|+||+
T Consensus 159 igrGQr~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~----------~~~~~l~~tvvv~ats 228 (502)
T PRK09281 159 IGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKL----------EEHGAMEYTIVVAATA 228 (502)
T ss_pred cccCcEEEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHH----------hhcCCccceEEEEeCC
Confidence 99999999999999999999 679999999998 69999999999999999986 6789999999999999
Q ss_pred CCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 320 ~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+||++|+++||+|+|+|||||++|+|||+|+|||||||+||||||.++|
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~g 278 (502)
T PRK09281 229 SDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLR 278 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999986
No 13
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.7e-66 Score=530.14 Aligned_cols=251 Identities=25% Similarity=0.387 Sum_probs=231.5
Q ss_pred eeEeEEEEEECcEEEEeecCCCccccEEEEc--CCc-EEEEEEEEeCCEEEEEEecCCCCCC-CCCeEEEcCCceEEecC
Q 017581 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDN-LIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELG 94 (369)
Q Consensus 19 ~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~~-~~geVi~i~~d~v~l~~~~~t~Gi~-~G~~V~~tg~~l~VpvG 94 (369)
..||+|++|.|++++++|+.++++||+|+|. ++. +.|||+++++|.+.+++|++++||+ .|+.|.+||++++||||
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg 81 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVS 81 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcC
Confidence 4799999999999999998899999999995 233 7899999999999999999999999 89999999999999999
Q ss_pred ccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCC
Q 017581 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (369)
Q Consensus 95 ~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~ 174 (369)
++|||||+|++|+|||+.++. ..
T Consensus 82 ~~lLGRVvD~~G~PlD~~~~i---------------~~------------------------------------------ 104 (460)
T PRK04196 82 EDMLGRIFDGLGRPIDGGPEI---------------IP------------------------------------------ 104 (460)
T ss_pred cccccCEECccCCCccCCCCC---------------CC------------------------------------------
Confidence 999999999999999985311 00
Q ss_pred CCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCC-CCccccccccceeccCceeeeccccccCCCeEeecCC
Q 017581 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (369)
Q Consensus 175 ~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~-~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~ 253 (369)
..+||++.+ +++++|+++++||.||||+||+|+||++|||++|||+
T Consensus 105 ---------------------------------~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg 151 (460)
T PRK04196 105 ---------------------------------EKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSG 151 (460)
T ss_pred ---------------------------------CccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCC
Confidence 023455543 3589999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcCCC------eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHh
Q 017581 254 FGCGKTVISQALSKYSNSD------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (369)
Q Consensus 254 sG~GKstLl~~ia~~~~~d------~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~ 327 (369)
+|+|||+|+.||++++++| +|||++||||++|+++|+++| .+.++|+||++|+||||+|+++|+
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~----------~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDF----------EETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHH----------HhcCCcceEEEEEEcCCCCHHHHH
Confidence 9999999999999999887 899999999999999999987 577899999999999999999999
Q ss_pred hhhHHHHHHHHHHH-HCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 328 ASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 328 ~a~~~a~tiAEyfr-~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++||+|+|+||||| |+|+|||||+|||||||+|+||||++||
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~g 264 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAARE 264 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcC
Confidence 99999999999999 7999999999999999999999999987
No 14
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=5.3e-66 Score=525.49 Aligned_cols=250 Identities=22% Similarity=0.341 Sum_probs=230.2
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEEc--CCc-EEEEEEEEeCCEEEEEEecCCCCCCCCCe-EEEcCCceEEecCc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDN-LIGEIIRLEGDSATIQVYEETAGLMVNDP-VLRTHKPLSVELGP 95 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~~-~~geVi~i~~d~v~l~~~~~t~Gi~~G~~-V~~tg~~l~VpvG~ 95 (369)
+|++|++|.|++++++|+.++++||+|.|. ++. +.|||+++++|.+.+++|+++.||+.|+. |.+||++++||||+
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~ 80 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSE 80 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcCh
Confidence 489999999999999998899999999994 233 68999999999999999999999999986 99999999999999
Q ss_pred cccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCC
Q 017581 96 GILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175 (369)
Q Consensus 96 ~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~ 175 (369)
+|||||+|++|+|||+.++ +..
T Consensus 81 ~lLGRViD~~G~plD~~~~---------------~~~------------------------------------------- 102 (458)
T TIGR01041 81 DMLGRILNGSGEPIDGGPE---------------IVP------------------------------------------- 102 (458)
T ss_pred hhccCEEccCCcccCCCCC---------------CCc-------------------------------------------
Confidence 9999999999999998421 100
Q ss_pred CceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCC
Q 017581 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAF 254 (369)
Q Consensus 176 ~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~s 254 (369)
..+||+..++ ++++|+++++||.||||+||+|+||++|||++|||++
T Consensus 103 --------------------------------~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~ 150 (458)
T TIGR01041 103 --------------------------------DERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGS 150 (458)
T ss_pred --------------------------------cceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCC
Confidence 0245665444 4899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhcCCC------eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhh
Q 017581 255 GCGKTVISQALSKYSNSD------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328 (369)
Q Consensus 255 G~GKstLl~~ia~~~~~d------~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~ 328 (369)
|+|||+|+.||++++++| +|||++||||++|+++|+++| .+.++|+||++|+||||+|+++|++
T Consensus 151 G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~----------~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 151 GLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDF----------EETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHH----------HhcCCcceEEEEEECCCCCHHHHHH
Confidence 999999999999999887 999999999999999999986 6778999999999999999999999
Q ss_pred hhHHHHHHHHHHH-HCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 329 SIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 329 a~~~a~tiAEyfr-~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+||+|+|+||||| ++|+|||||+|||||||+|+||||+++|
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~g 262 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAARE 262 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcC
Confidence 9999999999999 7999999999999999999999999987
No 15
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.9e-65 Score=521.16 Aligned_cols=252 Identities=24% Similarity=0.349 Sum_probs=232.9
Q ss_pred CceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcc
Q 017581 17 KESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPG 96 (369)
Q Consensus 17 ~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~ 96 (369)
+...+|+|++|.|++++++|++++++||+|.|.+ +..|+|++++++.+.+++|++++||+.|++|++||++++||+|++
T Consensus 3 ~~~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~~-~~~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~ 81 (485)
T CHL00059 3 KIVNTGTVLQVGDGIARIYGLDEVMAGELVEFED-GTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEA 81 (485)
T ss_pred ceeeeEEEEEEeccEEEEeccccCCcCCEEEECC-CCEEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHh
Confidence 3567899999999999999998999999999973 479999999999999999999999999999999999999999999
Q ss_pred ccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCC
Q 017581 97 ILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMG 176 (369)
Q Consensus 97 LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~ 176 (369)
|||||+|++|+|||+.++. ..
T Consensus 82 llGRVvd~lG~piDg~~~~---------------~~-------------------------------------------- 102 (485)
T CHL00059 82 YLGRVVNALAKPIDGKGEI---------------SA-------------------------------------------- 102 (485)
T ss_pred hcCCEECCCCCeeCCCCCc---------------CC--------------------------------------------
Confidence 9999999999999984311 00
Q ss_pred ceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCC
Q 017581 177 KVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFG 255 (369)
Q Consensus 177 ~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG 255 (369)
..+||++.++ ++++|+++++||.||||+||+|+||++|||++|||++|
T Consensus 103 -------------------------------~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g 151 (485)
T CHL00059 103 -------------------------------SESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQ 151 (485)
T ss_pred -------------------------------CccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCC
Confidence 0245665544 48999999999999999999999999999999999999
Q ss_pred CChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHH
Q 017581 256 CGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333 (369)
Q Consensus 256 ~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a 333 (369)
+|||+| +.+|+||+++|+ |||++||||++|+++|+++| .+.++|+||++|+|++++|+.+|+++||+|
T Consensus 152 ~GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l----------~~~~~l~~tvvV~atad~~~~~r~~ap~~a 221 (485)
T CHL00059 152 TGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTL----------QERGAMEYTIVVAETADSPATLQYLAPYTG 221 (485)
T ss_pred CCHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHh----------hcccchhceEEEEeCCCCCHHHHHHHHHHH
Confidence 999999 669999999997 59999999999999999986 688999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 334 ITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 334 ~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+|||||++|+|||++||||||||+||||||.+||
T Consensus 222 ~aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~ 257 (485)
T CHL00059 222 AALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLR 257 (485)
T ss_pred hhHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999986
No 16
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.7e-64 Score=509.65 Aligned_cols=249 Identities=21% Similarity=0.324 Sum_probs=230.0
Q ss_pred eeEeEEEEEECcEEEEeecCCCccccEEEEc--CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcc
Q 017581 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPG 96 (369)
Q Consensus 19 ~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~ 96 (369)
..||+|++|.|+++++++ +++++||+|.+. ++.+.|||++++++.+.+++|++++||+.|++|.+||++++||||++
T Consensus 3 ~~~g~v~~i~G~~v~v~~-~~~~~ge~~~i~~~~~~~~geVi~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~ 81 (436)
T PRK02118 3 KIYTKITDITGNVITVEA-EGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSES 81 (436)
T ss_pred ceeEEEEEEECcEEEEEe-CCCCCCCEEEEEcCCCCEEEEEEEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCcc
Confidence 478999999999999998 789999999995 34578999999999999999999999999999999999999999999
Q ss_pred ccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCC
Q 017581 97 ILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMG 176 (369)
Q Consensus 97 LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~ 176 (369)
|||||||++|+|||+.++. ..
T Consensus 82 lLGRV~d~~G~PiD~~~~~---------------~~-------------------------------------------- 102 (436)
T PRK02118 82 LLGRRFNGSGKPIDGGPEL---------------EG-------------------------------------------- 102 (436)
T ss_pred ccCCEEccCCcccCCCCCC---------------Cc--------------------------------------------
Confidence 9999999999999974311 00
Q ss_pred ceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCC
Q 017581 177 KVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFG 255 (369)
Q Consensus 177 ~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG 255 (369)
++||+..++ ++++|..++++|+||||+||+|+||++|||++|||+||
T Consensus 103 --------------------------------~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaG 150 (436)
T PRK02118 103 --------------------------------EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSG 150 (436)
T ss_pred --------------------------------ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCC
Confidence 123444333 46899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHH
Q 017581 256 CGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGIT 335 (369)
Q Consensus 256 ~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~t 335 (369)
+|||+|+.+|++|+++|++||++||||++|+++|+++| .+.++|+||++|+|++|+||++|+++|++|+|
T Consensus 151 vgk~~L~~~ia~~~~~~v~Vfa~iGeR~rE~~ef~~~~----------~~~~~l~rtvlv~~~adep~~~R~~~~~~Alt 220 (436)
T PRK02118 151 EPYNALLARIALQAEADIIILGGMGLTFDDYLFFKDTF----------ENAGALDRTVMFIHTASDPPVECLLVPDMALA 220 (436)
T ss_pred CCHHHHHHHHHHhhCCCeEEEEEeccchhHHHHHHHHH----------hhCCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 78899999999999999999999999999999
Q ss_pred HHHHHHHCC-CcEEEEecchHHHHHHHHHHhhccC
Q 017581 336 IAEYFRDMG-YNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 336 iAEyfr~~G-~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|||||++| +|||+++||+||||+|+||||+++|
T Consensus 221 iAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~g 255 (436)
T PRK02118 221 VAEKFALEGKKKVLVLLTDMTNFADALKEISITMD 255 (436)
T ss_pred HHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcC
Confidence 999999997 9999999999999999999999987
No 17
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=5.7e-64 Score=507.11 Aligned_cols=263 Identities=29% Similarity=0.369 Sum_probs=236.8
Q ss_pred chhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcC---C-cEEEEEEEEeCCEEEEEEecCCCCCCC
Q 017581 3 SVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH---D-NLIGEIIRLEGDSATIQVYEETAGLMV 78 (369)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~---~-~~~geVi~i~~d~v~l~~~~~t~Gi~~ 78 (369)
+.+.+.+++++. .+.+|+|++|.|+++++.+ +++++||+|.|.. + .+.+||++++++.+.+|+|++++||+.
T Consensus 9 ~~~~~~~~~~~~---~~~~G~V~~v~g~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~ 84 (439)
T PRK06936 9 HHLRHAIVGSRL---IQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISS 84 (439)
T ss_pred HHHHHHHhcCCc---cceeeEEEEEECcEEEEEe-CCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCC
Confidence 445566666544 7788999999999999975 7899999999952 2 489999999999999999999999999
Q ss_pred CCeEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeee
Q 017581 79 NDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATV 158 (369)
Q Consensus 79 G~~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~ 158 (369)
|++|.+||++++||||++|||||+|++|+|||+.++ +..
T Consensus 85 g~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~---------------~~~-------------------------- 123 (439)
T PRK06936 85 NTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHP---------------PEP-------------------------- 123 (439)
T ss_pred CCEEEeCCCceEEEeCccccCCEECCCCCccCCCCC---------------CCc--------------------------
Confidence 999999999999999999999999999999998421 100
Q ss_pred eecccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeee
Q 017581 159 FENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLD 237 (369)
Q Consensus 159 ~e~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID 237 (369)
.++||+..++ ++++|+.+++||.||+++||
T Consensus 124 -------------------------------------------------~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid 154 (439)
T PRK06936 124 -------------------------------------------------AAWYPVYADAPAPMSRRLIETPLSLGVRVID 154 (439)
T ss_pred -------------------------------------------------cceeeccCCCCChHHccccCCCCcCCcceee
Confidence 0245776444 48999999999999999999
Q ss_pred ccccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 238 ~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
.++|+++|||++|||+||||||||+++|+++.++|++||++||||++|++||++.. .+...|+||++|+|
T Consensus 155 ~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv~V~~liGERgrEv~ef~~~~----------l~~~~l~rtvvv~a 224 (439)
T PRK06936 155 GLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESD----------LGEEGLRKAVLVVA 224 (439)
T ss_pred eeEEecCCCEEEEECCCCCChHHHHHHHhcCCCCCEEEEEEEccCcHHHHHHHHHH----------hcccccceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999763 34456999999999
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+|+++|++++++|+|+||||||+|+||||++|||||||+|+||||.++|
T Consensus 225 tsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~g 276 (439)
T PRK06936 225 TSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAG 276 (439)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 18
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=4.7e-64 Score=510.12 Aligned_cols=250 Identities=31% Similarity=0.482 Sum_probs=229.3
Q ss_pred eEeEEEEEECcEEEEeecC--CCccccEEEEc---CCcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCceEEec
Q 017581 20 EYGYVRKVSGPVVIADGMN--GAAMYELVRVG---HDNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~--~~~igE~v~i~---~~~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vpv 93 (369)
.+|+|++|.|.+++++|.. .+++||+|.+. ++.+.|||++ ++++.+.+++|++++||+.|+.|.+|+++++||+
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 81 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV 81 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 4699999999999999862 34999999993 3458999999 9999999999999999999999999999999999
Q ss_pred CccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCC
Q 017581 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (369)
Q Consensus 94 G~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~ 173 (369)
|++|||||+|++|+|||+.+ ++.
T Consensus 82 g~~lLGRViD~~G~pld~~~---------------~~~------------------------------------------ 104 (463)
T PRK09280 82 GKATLGRIFNVLGEPIDEKG---------------PIG------------------------------------------ 104 (463)
T ss_pred ChhhcCCEEeeeccccCCCC---------------CcC------------------------------------------
Confidence 99999999999999999842 110
Q ss_pred CCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeeccccccCCCeEeecC
Q 017581 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (369)
Q Consensus 174 ~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg 252 (369)
+.++||++.++| +++|..+++||.||||+||+|+||++|||++|||
T Consensus 105 ---------------------------------~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa 151 (463)
T PRK09280 105 ---------------------------------AEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFG 151 (463)
T ss_pred ---------------------------------ccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeec
Confidence 124688876664 8999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhcCCC---eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhh
Q 017581 253 AFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (369)
Q Consensus 253 ~sG~GKstLl~~ia~~~~~d---~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a 329 (369)
++|+|||||+.||+++..+| ++||++||||++|+++|+++| .+.+.++||++|+||+|+||++|+++
T Consensus 152 ~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~----------~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 152 GAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHH
Confidence 99999999999998877655 899999999999999999987 56789999999999999999999999
Q ss_pred hHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 330 IYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 330 ~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+++|+++|||||+ +|+||||++|||||||+|+||||.++|
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~g 262 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLG 262 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcC
Confidence 9999999999999 999999999999999999999999987
No 19
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=7.6e-64 Score=509.65 Aligned_cols=250 Identities=30% Similarity=0.450 Sum_probs=229.7
Q ss_pred eEeEEEEEECcEEEEeecCC--CccccEEEEcC--CcEEEEEEEE-eCCEEEEEEecCCCCCCCCCeEEEcCCceEEecC
Q 017581 20 EYGYVRKVSGPVVIADGMNG--AAMYELVRVGH--DNLIGEIIRL-EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELG 94 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~--~~igE~v~i~~--~~~~geVi~i-~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG 94 (369)
..|+|++|.|++++++|+.+ +++||+|.+.. +.+.+||+++ +++.+.+++|++++||+.|+.|.+||++++||+|
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG 81 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 46999999999999999766 99999999953 4478999999 9999999999999999999999999999999999
Q ss_pred ccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCC
Q 017581 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (369)
Q Consensus 95 ~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~ 174 (369)
++|||||+|++|+|||+.+ +++.
T Consensus 82 ~~llGRVid~~G~plD~~~---------------~~~~------------------------------------------ 104 (461)
T PRK12597 82 EAVLGRLLDVLGEPLDGGP---------------PLPA------------------------------------------ 104 (461)
T ss_pred hhhcCCEEeeccccccCCC---------------CCCC------------------------------------------
Confidence 9999999999999999842 1110
Q ss_pred CCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCC-CCccccccccceeccCceeeeccccccCCCeEeecCC
Q 017581 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (369)
Q Consensus 175 ~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~-~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~ 253 (369)
.++||+..+ +++++|.++++||.||||+||+|+||++|||++|||+
T Consensus 105 ---------------------------------~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~ 151 (461)
T PRK12597 105 ---------------------------------EERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGG 151 (461)
T ss_pred ---------------------------------cceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecC
Confidence 124666543 3589999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcC---CCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 254 FGCGKTVISQALSKYSN---SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 254 sG~GKstLl~~ia~~~~---~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
+|+|||||+.||+++.. +|++||++||||++|+++|++++ .+.+.++|+++|+||+|+|+++|++++
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~----------~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEM----------KESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHH----------HhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 99999999999988776 89999999999999999999986 678899999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~-G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|+++|||||++ |+||||++|||||||+|+||||.++|
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~g 261 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLG 261 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcC
Confidence 9999999999997 99999999999999999999999987
No 20
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.3e-63 Score=501.93 Aligned_cols=251 Identities=27% Similarity=0.392 Sum_probs=231.0
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEc--CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCc
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGP 95 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~ 95 (369)
.+.+|+|++|.|.++++.|. .+++||+|.++ ++.+.|||++++++.+.+++|++++||+.|++|.+||++++||||+
T Consensus 23 ~~~~G~v~~v~g~~i~~~g~-~~~ige~~~i~~~~~~~~~EVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~ 101 (444)
T PRK08972 23 AVASGKLVRVVGLTLEATGC-RAPVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGM 101 (444)
T ss_pred cceeeEEEEEEcCEEEEeeC-CCCCCCEEEEecCCCcEEEEEEEecCCEEEEEECCCcCCCCCCCEEEECCCccEEEcCh
Confidence 56889999999999999985 69999999994 3458999999999999999999999999999999999999999999
Q ss_pred cccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCC
Q 017581 96 GILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175 (369)
Q Consensus 96 ~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~ 175 (369)
+|||||+|++|+|||+.++ +..
T Consensus 102 ~llGRVid~~G~plD~~~~---------------~~~------------------------------------------- 123 (444)
T PRK08972 102 SLLGRVIDGVGNPLDGLGP---------------IYT------------------------------------------- 123 (444)
T ss_pred hhcCCeECCCCCCcCCCCC---------------CCC-------------------------------------------
Confidence 9999999999999998531 110
Q ss_pred CceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCC
Q 017581 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAF 254 (369)
Q Consensus 176 ~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~s 254 (369)
.++||+..++ ++++|.++++||.||+++||.++||++|||++|||++
T Consensus 124 --------------------------------~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~s 171 (444)
T PRK08972 124 --------------------------------DQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGS 171 (444)
T ss_pred --------------------------------CccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCC
Confidence 0245665444 3889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHH
Q 017581 255 GCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 334 (369)
Q Consensus 255 G~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~ 334 (369)
|+|||||+++|+++.++|++||++||||++|++||++++ .+.+.|+||++|+||+|+|+++|++++++|+
T Consensus 172 G~GKSTLL~~I~~~~~~dv~Vi~lIGER~rEv~efi~~~----------l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~ 241 (444)
T PRK08972 172 GVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEI----------LGEEGRARSVVVAAPADTSPLMRLKGCETAT 241 (444)
T ss_pred CCChhHHHHHhccCCCCCEEEEEEEcCChHHHHHHHHHh----------hccCCcccEEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 4567799999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 335 TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 335 tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+||||||+|+||||++|||||||+|+||||.++|
T Consensus 242 tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~g 276 (444)
T PRK08972 242 TIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG 276 (444)
T ss_pred HHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999987
No 21
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.3e-63 Score=504.48 Aligned_cols=250 Identities=24% Similarity=0.349 Sum_probs=227.5
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEE--cCCc-EEEEEEEEeCCEEEEEEecCCCCCCC-CCeEEEcCCceEEecCc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRV--GHDN-LIGEIIRLEGDSATIQVYEETAGLMV-NDPVLRTHKPLSVELGP 95 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i--~~~~-~~geVi~i~~d~v~l~~~~~t~Gi~~-G~~V~~tg~~l~VpvG~ 95 (369)
+|++|++|.|++++++|++++++||+|.| .++. ..|||++|+++.+.+++|++++||+. |++|.+|+++++||||+
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~ 80 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSE 80 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCc
Confidence 47899999999999999889999999999 3443 68999999999999999999999997 99999999999999999
Q ss_pred cccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCC
Q 017581 96 GILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175 (369)
Q Consensus 96 ~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~ 175 (369)
+|||||+|++|+|||+.++ +..
T Consensus 81 ~lLGRVid~~G~piD~~~~---------------~~~------------------------------------------- 102 (466)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPP---------------VLA------------------------------------------- 102 (466)
T ss_pred ccccCEECccccccCCCCC---------------CCC-------------------------------------------
Confidence 9999999999999998421 100
Q ss_pred CceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCC
Q 017581 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAF 254 (369)
Q Consensus 176 ~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~s 254 (369)
.++||+..++ ++++|.+++++|.||||+||+|+||++|||++|||++
T Consensus 103 --------------------------------~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfags 150 (466)
T TIGR01040 103 --------------------------------EDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAA 150 (466)
T ss_pred --------------------------------CceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCC
Confidence 0245665444 5899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhcC------CC---------eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCC
Q 017581 255 GCGKTVISQALSKYSN------SD---------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 255 G~GKstLl~~ia~~~~------~d---------~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
|+|||+|+.||++|++ +| +|||++|||| +|+.+|++.- + .+.++|+||++|+||+
T Consensus 151 GvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~------l---~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 151 GLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQD------F---EENGSMERVCLFLNLA 220 (466)
T ss_pred CCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHH------H---HhcCCcceEEEEEECC
Confidence 9999999999999987 67 8999999999 9999988762 2 6778899999999999
Q ss_pred CCCHHhHhhhhHHHHHHHHHHH-HCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 320 NMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 320 ~~~~~~r~~a~~~a~tiAEyfr-~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+||++|+++|++|+|+||||| ++|+||||++|||||||+|+||||.++|
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~g 271 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAARE 271 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcC
Confidence 9999999999999999999999 7999999999999999999999999986
No 22
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=6.2e-63 Score=502.47 Aligned_cols=259 Identities=25% Similarity=0.356 Sum_probs=230.3
Q ss_pred ceeEeEEEEEECcEEEE---eecCCCccccEEEEc--C-CcEEEEEEEEeCC-EEEEEEecCCCCCCCCCeEEEcCCceE
Q 017581 18 ESEYGYVRKVSGPVVIA---DGMNGAAMYELVRVG--H-DNLIGEIIRLEGD-SATIQVYEETAGLMVNDPVLRTHKPLS 90 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v---~gl~~~~igE~v~i~--~-~~~~geVi~i~~d-~v~l~~~~~t~Gi~~G~~V~~tg~~l~ 90 (369)
..+.|+|++|.|+|+++ +|++++.+||++++. + +...|+|+++++| .+.+++|++++||+.|++|++||++++
T Consensus 37 ~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~ 116 (574)
T PTZ00185 37 TEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLY 116 (574)
T ss_pred heeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccE
Confidence 56789999998879995 899999999999993 3 3468999999999 799999999999999999999999999
Q ss_pred EecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccC
Q 017581 91 VELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVAL 170 (369)
Q Consensus 91 VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~ 170 (369)
||||++|||||+|++|+|||+.++... + |++
T Consensus 117 VpVG~~lLGRVvD~lG~PIDg~~~~~~-----~----------------------------g~i---------------- 147 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVGLLTRS-----R----------------------------ALL---------------- 147 (574)
T ss_pred EECCcccccCEECCCCcccCCCCcccc-----C----------------------------CCC----------------
Confidence 999999999999999999998531100 0 000
Q ss_pred CCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEe
Q 017581 171 PPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCA 249 (369)
Q Consensus 171 ~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~ 249 (369)
... ..+||+..++ ++++|+++++||+||||+||+|+||+||||++
T Consensus 148 ~~~----------------------------------~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~l 193 (574)
T PTZ00185 148 ESE----------------------------------QTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQREL 193 (574)
T ss_pred Ccc----------------------------------cccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEE
Confidence 000 0245776555 49999999999999999999999999999999
Q ss_pred ecCCCCCChHHHH-HHHHhhc---------CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCC
Q 017581 250 IPGAFGCGKTVIS-QALSKYS---------NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 250 Ifg~sG~GKstLl-~~ia~~~---------~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
|||++|+|||+|+ .+|+||+ ++++|||++||||++|++++.++| .+.++|+||++|+|++
T Consensus 194 IfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L----------~e~GaL~~TvVV~AtA 263 (574)
T PTZ00185 194 IVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLL----------RSYGALRYTTVMAATA 263 (574)
T ss_pred eecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHH----------HhcCCccceEEEEECC
Confidence 9999999999995 6999997 457899999999999999998876 7889999999999999
Q ss_pred CCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 320 ~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++||.+|+++||+|+|+||||||+|+|||+++|||||||+||||||.+||
T Consensus 264 dep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllg 313 (574)
T PTZ00185 264 AEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLR 313 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999986
No 23
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=4.2e-63 Score=501.91 Aligned_cols=248 Identities=32% Similarity=0.504 Sum_probs=227.8
Q ss_pred EeEEEEEECcEEEEeecCCCccccEE---EEcC--C-cEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCceEEec
Q 017581 21 YGYVRKVSGPVVIADGMNGAAMYELV---RVGH--D-NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (369)
Q Consensus 21 ~G~V~~I~G~ii~v~gl~~~~igE~v---~i~~--~-~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vpv 93 (369)
+|+|++|.|.++++.| +.+.+|++| .+.. + .+.+||++ |+++.+.+++|+++.||+.|+.|.+|++++++|+
T Consensus 2 ~G~v~~v~g~~ie~~~-~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~v 80 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEF-EQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPV 80 (461)
T ss_pred ccEEEEEEeeEEEEEE-CCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEc
Confidence 5999999999999998 578999999 7732 2 48899999 9999999999999999999999999999999999
Q ss_pred CccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCC
Q 017581 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (369)
Q Consensus 94 G~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~ 173 (369)
|++|||||+|++|+|||+.++ + +.
T Consensus 81 g~~lLGRViD~~G~pid~~~~---------------~----------------------------------------~~- 104 (461)
T TIGR01039 81 GKETLGRIFNVLGEPIDEKGP---------------I----------------------------------------PA- 104 (461)
T ss_pred ChhhcCCEEccCCcccCCCCC---------------C----------------------------------------CC-
Confidence 999999999999999998421 0 00
Q ss_pred CCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeeccccccCCCeEeecC
Q 017581 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (369)
Q Consensus 174 ~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg 252 (369)
.++||++.++| +++|++++++|.||||+||+|+||++|||++|||
T Consensus 105 ----------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~ 150 (461)
T TIGR01039 105 ----------------------------------KERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFG 150 (461)
T ss_pred ----------------------------------CcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeec
Confidence 13578875554 9999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhcCCC---eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhh
Q 017581 253 AFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (369)
Q Consensus 253 ~sG~GKstLl~~ia~~~~~d---~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a 329 (369)
++|+|||||+.||+++...| ++||++||||++|++||+++| .+.++|+||++|+||+|+|+++|+++
T Consensus 151 ~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~----------~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 151 GAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHH
Confidence 99999999999999877555 899999999999999999986 57889999999999999999999999
Q ss_pred hHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 330 IYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 330 ~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+++|+|+|||||+ +|+||||++|||||||+|+||||.++|
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~g 261 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLG 261 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcC
Confidence 9999999999998 899999999999999999999999987
No 24
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=7.6e-63 Score=503.78 Aligned_cols=250 Identities=18% Similarity=0.224 Sum_probs=226.3
Q ss_pred EEEEEECcEEEEeecCCCccccEEEEcCC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcccccee
Q 017581 23 YVRKVSGPVVIADGMNGAAMYELVRVGHD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNI 101 (369)
Q Consensus 23 ~V~~I~G~ii~v~gl~~~~igE~v~i~~~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLGRV 101 (369)
+|++|.|+++++.|+.++++||+|+|.++ ...|+|+++++|.+.+++|+++.||+.|++|++||++++||||++|||||
T Consensus 4 ~V~~v~~~i~~v~Gl~~~~~ge~~~~~~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRV 83 (507)
T PRK07165 4 KIKSIFDYIVEVKGEYDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKI 83 (507)
T ss_pred EEEEEeceEEEEEcccCCCcCCEEEECCCCeEEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCCE
Confidence 78999999999999989999999999633 38999999999999999999999999999999999999999999999999
Q ss_pred ecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceEEe
Q 017581 102 FDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYV 181 (369)
Q Consensus 102 lDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~~~ 181 (369)
+|++|+|||+.++... . . .+
T Consensus 84 vd~lG~piDg~g~i~~-------------~-~-~~--------------------------------------------- 103 (507)
T PRK07165 84 IDIDGNIIYPEAQNPL-------------S-K-KF--------------------------------------------- 103 (507)
T ss_pred ECCCCcccCCCCCCCc-------------c-c-cc---------------------------------------------
Confidence 9999999998531100 0 0 00
Q ss_pred ccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCChHH
Q 017581 182 APAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV 260 (369)
Q Consensus 182 ~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKst 260 (369)
...+||+..++ ++++|+++++||+|||++||+|+||+||||++|||++|+|||+
T Consensus 104 -------------------------~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~ 158 (507)
T PRK07165 104 -------------------------LPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTH 158 (507)
T ss_pred -------------------------ccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccH
Confidence 01245675544 4999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHH
Q 017581 261 I-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 338 (369)
Q Consensus 261 L-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAE 338 (369)
| +.+|++|+++|+ |||++||||++|+++|+++| ++.++|+||++|++++ +||.+|+++||+|+|+||
T Consensus 159 lal~~I~~q~~~dv~~V~~~IGer~~ev~~~~~~l----------~~~gal~~tvvV~ats-d~~~~r~~ap~~a~tiAE 227 (507)
T PRK07165 159 IALNTIINQKNTNVKCIYVAIGQKRENLSRIYETL----------KEHDALKNTIIIDAPS-TSPYEQYLAPYVAMAHAE 227 (507)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCChHHHHHHHHHh----------hhcCceeeeEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 9 579999999997 69999999999999999986 7889999999999998 599999999999999999
Q ss_pred HHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 339 YFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 339 yfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|||++ +|||+|+|||||||+||||||.+||
T Consensus 228 yfrd~-~dVLlv~DdLTr~A~A~REisLllg 257 (507)
T PRK07165 228 NISYN-DDVLIVFDDLTKHANIYREIALLTN 257 (507)
T ss_pred HHHhc-CceEEEEcChHHHHHHHHHHHhhcc
Confidence 99999 9999999999999999999999986
No 25
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=2.8e-62 Score=498.88 Aligned_cols=259 Identities=29% Similarity=0.415 Sum_probs=226.0
Q ss_pred CceeEeEEEEEECcEEEEeecCCCcc---ccEEEEcC-C------cEEEEEEEEeC-CEEEEEEecCCCCCCCCCeEEEc
Q 017581 17 KESEYGYVRKVSGPVVIADGMNGAAM---YELVRVGH-D------NLIGEIIRLEG-DSATIQVYEETAGLMVNDPVLRT 85 (369)
Q Consensus 17 ~~~~~G~V~~I~G~ii~v~gl~~~~i---gE~v~i~~-~------~~~geVi~i~~-d~v~l~~~~~t~Gi~~G~~V~~t 85 (369)
..+.+|+|++|.|.++++.|. .+.+ ||+|.+.. + .+.+||+++.+ +.+.+++|++++||+.|++|.+|
T Consensus 12 ~~~~~G~V~~v~G~viev~~~-~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~t 90 (494)
T CHL00060 12 EEKNLGRITQIIGPVLDVAFP-PGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDT 90 (494)
T ss_pred ccccceEEEEEEccEEEEEec-CCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeC
Confidence 356789999999999999985 5556 99999942 2 47899999999 99999999999999999999999
Q ss_pred CCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeeccccc
Q 017581 86 HKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQ 165 (369)
Q Consensus 86 g~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~ 165 (369)
+++++||||++|||||+|++|+|||+.++ +..
T Consensus 91 g~~~~vpvg~~lLGRVid~~G~piDg~~~---------------~~~--------------------------------- 122 (494)
T CHL00060 91 GAPLSVPVGGATLGRIFNVLGEPVDNLGP---------------VDT--------------------------------- 122 (494)
T ss_pred CCcceeecchhhcCCEEeecCcccCCCCC---------------CCC---------------------------------
Confidence 99999999999999999999999998421 100
Q ss_pred ccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccC
Q 017581 166 HHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVL 244 (369)
Q Consensus 166 ~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~ 244 (369)
.++||+..++ ++++|++++++|.||||+||+|+||+|
T Consensus 123 ------------------------------------------~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigk 160 (494)
T CHL00060 123 ------------------------------------------RTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRR 160 (494)
T ss_pred ------------------------------------------CccccccCCCcCchhcccccceeecCceeeeccCCccc
Confidence 1246665444 489999999999999999999999999
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh-cCC--CeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY-SNS--DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~-~~~--d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~ 321 (369)
|||++|||++|+|||||+.||+++ +++ |++||++||||+||++||+++|.+..... .+..+++++++|+||+|+
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~---~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIN---EQNIAESKVALVYGQMNE 237 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccc---cCcccccceEEEEECCCC
Confidence 999999999999999999998877 544 99999999999999999999873322100 111247899999999999
Q ss_pred CHHhHhhhhHHHHHHHHHHHHCCC-cEEEEecchHHHHHHHHHHhhccC
Q 017581 322 PVAAREASIYTGITIAEYFRDMGY-NVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfr~~G~-~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+++|++++++|+|+|||||++|+ ||||++|||||||+|+||||.++|
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~g 286 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLG 286 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcC
Confidence 999999999999999999999886 999999999999999999999987
No 26
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4e-63 Score=491.57 Aligned_cols=268 Identities=29% Similarity=0.415 Sum_probs=251.1
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
++|.+|+++++|+.....++.|+|++|.++|+++.|+.+++.||++++. ++.+|.++++++|.|.+.++++...|+.|+
T Consensus 8 i~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~ 86 (504)
T COG0056 8 ISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGD 86 (504)
T ss_pred HHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCchhhcCceEEec-CCcEEEEEeccccceeEEEecCCccccCCc
Confidence 3688999999999999999999999999999999999999999999998 568999999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|++||+.++||||++|||||+|++|+|+|+.++. +.
T Consensus 87 ~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i---------------~~---------------------------- 123 (504)
T COG0056 87 EVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPI---------------DA---------------------------- 123 (504)
T ss_pred EEEeeCceEEEecchhhcceeecCCCCccCCCCCc---------------cc----------------------------
Confidence 99999999999999999999999999999985311 00
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l 239 (369)
.+..|+..++| +++|+++++|++|||++||+|
T Consensus 124 -----------------------------------------------~~~~~~e~~Apgv~~RksV~ePlqTGikaIDam 156 (504)
T COG0056 124 -----------------------------------------------TKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDAL 156 (504)
T ss_pred -----------------------------------------------cccCccccccCceecccccCchhhhhhHHHhhh
Confidence 12346665555 999999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHHHH-HHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQ-ALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~-~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
+|||||||.+|+|++++|||+++. .|+||++.|+ |||++||++.+.++++++.+ ++.++|++|+||++
T Consensus 157 iPIGRGQRELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL----------~e~gAmdyTiVV~A 226 (504)
T COG0056 157 IPIGRGQRELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTL----------EEHGAMDYTIVVAA 226 (504)
T ss_pred cccCCCceEEEeccCcCCcchhhHHHHHhcccCCcEEEEEEcccchHHHHHHHHHH----------HHcCCccceEEEEe
Confidence 999999999999999999999999 7999999987 99999999999999999985 78999999999999
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++++++.++|++||++|++|||||++|+|||++|||||+||.||||||.+|+
T Consensus 227 sASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlr 278 (504)
T COG0056 227 SASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLR 278 (504)
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999985
No 27
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.7e-62 Score=491.96 Aligned_cols=255 Identities=27% Similarity=0.399 Sum_probs=231.1
Q ss_pred cCceeEeEEEEEECcEEEEeecC-CCccccEEEEcC--C-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEE
Q 017581 16 EKESEYGYVRKVSGPVVIADGMN-GAAMYELVRVGH--D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (369)
Q Consensus 16 ~~~~~~G~V~~I~G~ii~v~gl~-~~~igE~v~i~~--~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~V 91 (369)
...+.+|+|++|.|++++++|+. .+++||+|.+.. + .+.|||++++++.+.+++|+++.|++.|++|.+||++++|
T Consensus 13 ~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 92 (442)
T PRK08927 13 DTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAV 92 (442)
T ss_pred CcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEE
Confidence 34788999999999999999974 799999999952 3 4899999999999999999999999999999999999999
Q ss_pred ecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCC
Q 017581 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (369)
Q Consensus 92 pvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~ 171 (369)
|+|++|||||+|++|+|||+.++ +...
T Consensus 93 ~vg~~llGRVid~~G~piDg~~~---------------~~~~-------------------------------------- 119 (442)
T PRK08927 93 RPSRAWLGRVVNALGEPIDGKGP---------------LPQG-------------------------------------- 119 (442)
T ss_pred ECChhhCCCEEccCCCCccCCCC---------------CCCC--------------------------------------
Confidence 99999999999999999998431 0000
Q ss_pred CCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEee
Q 017581 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (369)
Q Consensus 172 ~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~I 250 (369)
..+||+..++ ++++|.+++++|.||||+||.|+||++|||++|
T Consensus 120 ------------------------------------~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I 163 (442)
T PRK08927 120 ------------------------------------PVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGI 163 (442)
T ss_pred ------------------------------------cccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEE
Confidence 0245665444 589999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 251 fg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
||++|+|||||+++|+++.+++++||++||||++|+++|+++. .+...++|+++|+||+|+|+++|++++
T Consensus 164 ~G~sG~GKTtLL~~I~~~~~~d~~v~~~iGER~rEv~ef~~~~----------l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 164 FAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDD----------LGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred ECCCCCCHHHHHHHHHhccCCCEEEEEEEecCcHHHHHHHHHH----------hhccCceeEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999752 234459999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|+++|||||++|+|||+++|||||||+|+||||.++|
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~g 272 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAG 272 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcC
Confidence 999999999999999999999999999999999999886
No 28
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=9.5e-62 Score=492.11 Aligned_cols=248 Identities=27% Similarity=0.380 Sum_probs=227.5
Q ss_pred eEEEEEECcEEEEeec-CCCccccEEEEcC-CcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcccc
Q 017581 22 GYVRKVSGPVVIADGM-NGAAMYELVRVGH-DNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGIL 98 (369)
Q Consensus 22 G~V~~I~G~ii~v~gl-~~~~igE~v~i~~-~~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LL 98 (369)
|+|++|.|+++++++. ..+.+++++.+.. +.+.+||++ ++++.+.+++|++++||+.|++|.+||++++||||++||
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lL 80 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTL 80 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecCCCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhc
Confidence 7999999999999983 3488999999874 568999998 999999999999999999999999999999999999999
Q ss_pred ceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCce
Q 017581 99 GNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKV 178 (369)
Q Consensus 99 GRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v 178 (369)
|||+|++|+|||+.++ +..
T Consensus 81 GRVlD~~G~PiD~~~~---------------~~~---------------------------------------------- 99 (449)
T TIGR03305 81 SRMFDVFGNTIDRREP---------------PKD---------------------------------------------- 99 (449)
T ss_pred CCEEccCccccCCCCC---------------CCC----------------------------------------------
Confidence 9999999999998421 100
Q ss_pred EEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCC
Q 017581 179 TYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCG 257 (369)
Q Consensus 179 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~G 257 (369)
.++||+..++ ++++|++++++|.||||+||.|+||++|||++|||++|+|
T Consensus 100 -----------------------------~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~G 150 (449)
T TIGR03305 100 -----------------------------VEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVG 150 (449)
T ss_pred -----------------------------ccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCC
Confidence 1356776544 4899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcC---CCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHH
Q 017581 258 KTVISQALSKYSN---SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 334 (369)
Q Consensus 258 KstLl~~ia~~~~---~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~ 334 (369)
||+|+.+|+++.. +|++||++||||++|+++|++++ .+.++|+|+++|+||+|+|+++|++++++|+
T Consensus 151 Kt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~----------~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~ 220 (449)
T TIGR03305 151 KTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREM----------KEAGVLDNTVMVFGQMNEPPGARFRVGHTAL 220 (449)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHH----------hhccccceEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999988764 78999999999999999999986 6788999999999999999999999999999
Q ss_pred HHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 335 TIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 335 tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|||||+ +|+||||++|||||||+|+||||+++|
T Consensus 221 tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~g 256 (449)
T TIGR03305 221 TMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLG 256 (449)
T ss_pred HHHHHHHHhcCCceEEEecChHHHHHHHHHHHHHcC
Confidence 99999998 999999999999999999999999987
No 29
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=4e-61 Score=487.27 Aligned_cols=265 Identities=29% Similarity=0.374 Sum_probs=243.1
Q ss_pred chhhhhhcCCCccc-CceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCe
Q 017581 3 SVYGARLTTFEDEE-KESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (369)
Q Consensus 3 s~~~~~~~~~~~~~-~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~ 81 (369)
+.++++++.|+..+ ..+.+|+|++|.|.++++.+ +++++||+|.+..+...|||++++++++.+++|++++||+.|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~ 89 (440)
T PRK06820 11 PRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASL-PGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQW 89 (440)
T ss_pred HHHHHHHHhcCCCCCceeEeeEEEEEECcEEEEEE-CCCCcCCEEEEecCCeEEEEEEEeCCeEEEEEccCccCCCCCCE
Confidence 46789999999988 78889999999999999985 78999999999634489999999999999999999999999999
Q ss_pred EEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeec
Q 017581 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (369)
Q Consensus 82 V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~ 161 (369)
|++||+++++|+|++|||||+|++|+|||+.+ ++. .
T Consensus 90 v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~---------------~~~--~--------------------------- 125 (440)
T PRK06820 90 VTPLGHMHQVQVGADLAGRILDGLGAPIDGGP---------------PLT--G--------------------------- 125 (440)
T ss_pred EEECCCCcEEEechhhcCCEECccCCccCCCC---------------CCC--c---------------------------
Confidence 99999999999999999999999999999842 110 0
Q ss_pred ccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccC-CCCccccccccceeccCceeeeccc
Q 017581 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALF 240 (369)
Q Consensus 162 ~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~-~~~~~~r~~~~~~l~TGi~aID~l~ 240 (369)
++||+.. ++++++|++++++|.||+++||.|+
T Consensus 126 -----------------------------------------------~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~ 158 (440)
T PRK06820 126 -----------------------------------------------QWRELDCPPPSPLTRQPIEQMLTTGIRAIDGIL 158 (440)
T ss_pred -----------------------------------------------ccccccCCCCChhhcCCchhhccCCCceecceE
Confidence 1234443 3348899999999999999999999
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 320 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~ 320 (369)
|+++|||++|||++|+|||||+++|+++.++|++||++||+|++|+.+|++.+ ...+.+.++++|+|++|
T Consensus 159 ~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGergrEv~ef~e~~----------l~~~~~~rtvvv~atsd 228 (440)
T PRK06820 159 SCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQV----------LTPEARARTVVVVATSD 228 (440)
T ss_pred EecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEccChHHHHHHHHHh----------hccCCceeEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999875 46678999999999999
Q ss_pred CCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 321 MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 321 ~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+++|++++++|+++|||||++|+||||++|||||||+|+||||.++|
T Consensus 229 ~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~g 277 (440)
T PRK06820 229 RPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAG 277 (440)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999886
No 30
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.7e-60 Score=481.79 Aligned_cols=253 Identities=30% Similarity=0.442 Sum_probs=231.0
Q ss_pred cCceeEeEEEEEECcEEEEeecCCCccccEEEEc--CCc--EEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEE
Q 017581 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDN--LIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (369)
Q Consensus 16 ~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~~--~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~V 91 (369)
...+.+|+|++|.|++++++|+ .+++||+|+|. ++. +.|||++|+++++.+++|++++||+.|++|.+||++++|
T Consensus 20 ~~~~~~G~V~~v~g~~i~~~g~-~~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~v 98 (441)
T PRK09099 20 PAVRRTGKVVEVIGTLLRVSGL-DVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSV 98 (441)
T ss_pred CcceEeeEEEEEECCEEEEecc-CCCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCCCEEEeCCCccEE
Confidence 3378899999999999999997 59999999994 233 689999999999999999999999999999999999999
Q ss_pred ecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCC
Q 017581 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (369)
Q Consensus 92 pvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~ 171 (369)
|+|++|||||+|++|+|||+.+ +++.
T Consensus 99 ~vg~~lLGrV~d~~G~piD~~~---------------~~~~--------------------------------------- 124 (441)
T PRK09099 99 PVGPALLGRVIDGLGEPIDGGG---------------PLDC--------------------------------------- 124 (441)
T ss_pred EeccccccCEEcccCCccCCCC---------------CCcc---------------------------------------
Confidence 9999999999999999999842 1110
Q ss_pred CCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEee
Q 017581 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (369)
Q Consensus 172 ~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~I 250 (369)
.++||+..++ ++++|+++++||.||+++||.++|+++||+++|
T Consensus 125 ------------------------------------~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I 168 (441)
T PRK09099 125 ------------------------------------DELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGI 168 (441)
T ss_pred ------------------------------------ccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEE
Confidence 0234554333 488999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 251 fg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
||++|+|||||+++|+++..+|.++|++||||++|+++|++.+ .+.+.++++++|+||+|+|+++|++++
T Consensus 169 ~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~----------~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 169 FAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELI----------LGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHHHHHHHHH----------hhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 466789999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+|+|||||++|+|||+++||+||||+|+||||.++|
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~g 277 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAG 277 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999886
No 31
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=3.4e-60 Score=479.43 Aligned_cols=251 Identities=27% Similarity=0.406 Sum_probs=228.6
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEc---CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecC
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELG 94 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~---~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG 94 (369)
.+.+|+|++|.|++++++|+ .+++||+|.|. ++.+.|||++++++++.+++|++++||+.|++|.+++++++||+|
T Consensus 17 ~~~~g~v~~v~g~~i~~~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg 95 (434)
T PRK05922 17 YRECGLLSRVSGNLLEAQGL-SACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLS 95 (434)
T ss_pred ceeeeEEEEEEccEEEEEeC-CCCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcC
Confidence 66899999999999999997 58899999995 224899999999999999999999999999999999999999999
Q ss_pred ccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCC
Q 017581 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (369)
Q Consensus 95 ~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~ 174 (369)
++|||||+|++|+|||+.+ +++. |
T Consensus 96 ~~llGrv~d~~G~pld~~~---------------~~~~---~-------------------------------------- 119 (434)
T PRK05922 96 DHLLGRVLDGFGNPLDGKE---------------QLPK---T-------------------------------------- 119 (434)
T ss_pred hhhcCCEeCCCCCccCCCC---------------CCCc---c--------------------------------------
Confidence 9999999999999999842 1110 1
Q ss_pred CCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCC
Q 017581 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (369)
Q Consensus 175 ~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~ 253 (369)
.+||+..++ ++++|.+++++|.||||+||.++|+++|||++|||+
T Consensus 120 ----------------------------------~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~ 165 (434)
T PRK05922 120 ----------------------------------HLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSE 165 (434)
T ss_pred ----------------------------------ceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECC
Confidence 234554333 478999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHH
Q 017581 254 FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333 (369)
Q Consensus 254 sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a 333 (369)
+|+|||||+++|+++.++++++|++||+|++|+.+|++.+ .+...+++|++|+||+|+|+++|++++++|
T Consensus 166 nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~----------~~~~~~~rTVlv~atsd~~~~~r~~a~~~a 235 (434)
T PRK05922 166 PGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQH----------KEGLAAQRTIIIASPAHETAPTKVIAGRAA 235 (434)
T ss_pred CCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHH----------HhhccccceEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999774 455668899999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 334 ITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 334 ~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+||||||+|+||||++||+||||+|+||||.++|
T Consensus 236 ~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~g 271 (434)
T PRK05922 236 MTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARG 271 (434)
T ss_pred HHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 32
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.7e-60 Score=481.72 Aligned_cols=264 Identities=25% Similarity=0.382 Sum_probs=236.4
Q ss_pred hhhhhcCCCcc----cCceeEeEEEEEECcEEEEeecCCCccccEEEEcC--C----cEEEEEEEEeCCEEEEEEecCCC
Q 017581 5 YGARLTTFEDE----EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH--D----NLIGEIIRLEGDSATIQVYEETA 74 (369)
Q Consensus 5 ~~~~~~~~~~~----~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~--~----~~~geVi~i~~d~v~l~~~~~t~ 74 (369)
|+++++.|... ...+.+|+|++|.|.++++.|+ .+++||+|.+.. + .+.|||++|+++.+.+++|+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~v~~v~g~~~~~~g~-~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~ 86 (451)
T PRK05688 8 FAKRLEGYAEAISLPAQPVVEGRLLRMVGLTLEAEGL-RAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVA 86 (451)
T ss_pred HHHHHHHHHHHHhcCCccceeeEEEEEEecEEEEecC-CCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCcc
Confidence 45555544433 3367889999999999999985 699999999942 3 48999999999999999999999
Q ss_pred CCCCCCeEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcc
Q 017581 75 GLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDL 154 (369)
Q Consensus 75 Gi~~G~~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i 154 (369)
||+.|+.|++||++++||+|++|||||+|++|+|||+.++ +..
T Consensus 87 gi~~g~~V~~tg~~~~v~vg~~llGRV~d~~G~plD~~~~---------------~~~---------------------- 129 (451)
T PRK05688 87 GIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGP---------------MKA---------------------- 129 (451)
T ss_pred CCCCCCEEEECCCccEEEecccccCCEEeccCceecCCCC---------------CCc----------------------
Confidence 9999999999999999999999999999999999998421 100
Q ss_pred eeeeeecccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCc
Q 017581 155 YATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQ 233 (369)
Q Consensus 155 ~g~~~e~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi 233 (369)
.++||+..++ ++++|.++++||.||+
T Consensus 130 -----------------------------------------------------~~~~~i~~~~~~p~~R~~i~~~l~TGi 156 (451)
T PRK05688 130 -----------------------------------------------------EDWVPMDGPTINPLNRHPISEPLDVGI 156 (451)
T ss_pred -----------------------------------------------------cceecccCCCCCHHHcccccCCcccce
Confidence 0234554433 4889999999999999
Q ss_pred eeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeE
Q 017581 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313 (369)
Q Consensus 234 ~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~ 313 (369)
++||.|+||++|||++|||++|+|||||+++|+++.+++++|+++||++++|+++|++.+ .+.+.+++++
T Consensus 157 ~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~----------~~~~~l~rsv 226 (451)
T PRK05688 157 RSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHI----------LGEEGLKRSV 226 (451)
T ss_pred eeecceEEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHH----------hhcCCccEEE
Confidence 999999999999999999999999999999999999999999999999999999999885 5778899999
Q ss_pred EEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 314 LVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 314 vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+||+|+||++|++++++|+++||||||+|+||||++|||||||+|+||||.++|
T Consensus 227 vv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~g 282 (451)
T PRK05688 227 VVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIG 282 (451)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999987
No 33
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.4e-59 Score=474.08 Aligned_cols=247 Identities=30% Similarity=0.471 Sum_probs=229.1
Q ss_pred eEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcccc
Q 017581 22 GYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGIL 98 (369)
Q Consensus 22 G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LL 98 (369)
|+|++|.|++++++|+ ++++||+|++. ++ .+.|||++++++.+.+++|++++||+.|+.|++||+++++|+|++||
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~ll 79 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLL 79 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhc
Confidence 7999999999999997 89999999995 33 37899999999999999999999999999999999999999999999
Q ss_pred ceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCce
Q 017581 99 GNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKV 178 (369)
Q Consensus 99 GRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v 178 (369)
|||+|++|+|||+.+ ++..
T Consensus 80 GrVid~~G~pld~~~---------------~~~~---------------------------------------------- 98 (411)
T TIGR03496 80 GRVIDGLGRPLDGKG---------------PLDA---------------------------------------------- 98 (411)
T ss_pred CCEECCCCCCcCCCC---------------CCCc----------------------------------------------
Confidence 999999999999842 1100
Q ss_pred EEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCC
Q 017581 179 TYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCG 257 (369)
Q Consensus 179 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~G 257 (369)
.++||+..++ ++++|..++++|.||+++||.++|+++|||++|||++|+|
T Consensus 99 -----------------------------~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~G 149 (411)
T TIGR03496 99 -----------------------------GERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVG 149 (411)
T ss_pred -----------------------------ccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCC
Confidence 1356776544 5899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHH
Q 017581 258 KTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337 (369)
Q Consensus 258 KstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiA 337 (369)
||||+.+|+++.++++++|++||+|++|+.+|++.+ .+.+.|+||++|+||+|+|+++|+++|++|+++|
T Consensus 150 KTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~----------~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiA 219 (411)
T TIGR03496 150 KSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDI----------LGEEGLARSVVVAATADESPLMRLRAAFYATAIA 219 (411)
T ss_pred HHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHH----------hhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985 6778999999999999999999999999999999
Q ss_pred HHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 338 Eyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||||++|+|||+++|||||||+|+||||.++|
T Consensus 220 Eyfr~~G~~Vll~~Dsltr~A~A~REisl~~g 251 (411)
T TIGR03496 220 EYFRDQGKDVLLLMDSLTRFAMAQREIALAIG 251 (411)
T ss_pred HHHHHCCCCEEEEEeChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999987
No 34
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=4.4e-59 Score=471.61 Aligned_cols=257 Identities=30% Similarity=0.437 Sum_probs=235.4
Q ss_pred CCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceE
Q 017581 11 TFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLS 90 (369)
Q Consensus 11 ~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~ 90 (369)
+|.+....+.+|+|++|.|+++++.+ +++++||+|.+..+...|||++++++.+.+++|++++||+.|++|.+||++++
T Consensus 12 ~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~ 90 (433)
T PRK07594 12 KYPPPDGYCRWGRIQDVSATLLNAWL-PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQ 90 (433)
T ss_pred CCCCCCccceeeEEEEEECCEEEEEE-CCcCCCCEEEEecCCeEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 67888888999999999999999995 79999999999534589999999999999999999999999999999999999
Q ss_pred EecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccC
Q 017581 91 VELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVAL 170 (369)
Q Consensus 91 VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~ 170 (369)
+|||++|||||+|++|+|||+.++ .. .
T Consensus 91 v~vg~~llGrVid~~G~pld~~~~---------------~~--~------------------------------------ 117 (433)
T PRK07594 91 VPVGEALLGRVIDGFGRPLDGREL---------------PD--V------------------------------------ 117 (433)
T ss_pred EEeChhhccCEEcccCCCcCCCCC---------------Cc--c------------------------------------
Confidence 999999999999999999998421 00 0
Q ss_pred CCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccC-CCCccccccccceeccCceeeeccccccCCCeEe
Q 017581 171 PPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCA 249 (369)
Q Consensus 171 ~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~-~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~ 249 (369)
.+||+.. ++++++|+.++++|.||+++||.++|+++|||++
T Consensus 118 --------------------------------------~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~Gqrig 159 (433)
T PRK07594 118 --------------------------------------CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG 159 (433)
T ss_pred --------------------------------------cccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEE
Confidence 1234433 3358999999999999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhh
Q 017581 250 IPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (369)
Q Consensus 250 Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a 329 (369)
|||++|+|||||+++|+++.++|.++|++||||++|+++|++.+ .+.+.++++++|+|++|+|+++|+++
T Consensus 160 I~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv~efl~~~----------~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 160 IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT----------LSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred EECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHHHHHHHHh----------hccCCcceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999875 45678999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 330 IYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 330 ~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+++|+|+||||||+|+||||++|||||||+|+||||.++|
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~g 269 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAG 269 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987
No 35
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=5.9e-59 Score=469.85 Aligned_cols=249 Identities=31% Similarity=0.499 Sum_probs=227.1
Q ss_pred eEEEEEECcEEEEeecCCC-ccccEEEEcC--C-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccc
Q 017581 22 GYVRKVSGPVVIADGMNGA-AMYELVRVGH--D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGI 97 (369)
Q Consensus 22 G~V~~I~G~ii~v~gl~~~-~igE~v~i~~--~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~L 97 (369)
|+|++|.|++++++|+..+ ++||+|.|.. + ...|||++++++.+.+++|++++||+.|+.|++|+++++||||++|
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhh
Confidence 7999999999999998664 9999999953 3 3789999999999999999999999999999999999999999999
Q ss_pred cceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCc
Q 017581 98 LGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGK 177 (369)
Q Consensus 98 LGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~ 177 (369)
||||+|++|+|||+.++ +.. .
T Consensus 81 LGRViD~lG~plD~~~~---------------~~~----------------------------------------~---- 101 (418)
T TIGR03498 81 LGRVINALGEPIDGKGP---------------LPQ----------------------------------------G---- 101 (418)
T ss_pred cCCEECCCCCccCCCCC---------------CCC----------------------------------------C----
Confidence 99999999999998421 000 0
Q ss_pred eEEeccCCcccccceEEEEEeecceeeeeeccceeccC-CCCccccccccceeccCceeeeccccccCCCeEeecCCCCC
Q 017581 178 VTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGC 256 (369)
Q Consensus 178 v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~-~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~ 256 (369)
..+||++. ++++++|.+++++|.||+++||.++|+++|||++|||++|+
T Consensus 102 ------------------------------~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~ 151 (418)
T TIGR03498 102 ------------------------------ERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGV 151 (418)
T ss_pred ------------------------------cceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCC
Confidence 02467764 44599999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHH
Q 017581 257 GKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITI 336 (369)
Q Consensus 257 GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~ti 336 (369)
|||||+.+|+++.+++..+|+++|+|++|+++|++.+ .+.+.|+||++|+||+|+||++|+++||+|+++
T Consensus 152 GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~----------l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~i 221 (418)
T TIGR03498 152 GKSTLLSMLARNTDADVVVIALVGERGREVREFLEDD----------LGEEGLKRSVVVVATSDESPLMRRQAAYTATAI 221 (418)
T ss_pred ChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHh----------hhccccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999863 344569999999999999999999999999999
Q ss_pred HHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 337 AEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 337 AEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|||||++|+||||++|||||||+|+||||.++|
T Consensus 222 AEyfrd~G~~Vll~~DslTr~A~A~REisl~~g 254 (418)
T TIGR03498 222 AEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAG 254 (418)
T ss_pred HHHHHHcCCCEEEeccchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999886
No 36
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.3e-59 Score=469.62 Aligned_cols=253 Identities=25% Similarity=0.385 Sum_probs=231.4
Q ss_pred cCceeEeEEEEEECcEEEEeecCCCccccEEEEc--CC----cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEc----
Q 017581 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRT---- 85 (369)
Q Consensus 16 ~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~----~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~t---- 85 (369)
...+.+|+|++|.|.++++.| +.+++||+|.+. ++ .+.+||++|+++.+.+++|++++||+.|++|.++
T Consensus 23 ~~~~~~G~v~~v~g~~v~~~g-~~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~ 101 (455)
T PRK07960 23 PAVRRYGRLTRATGLVLEATG-LQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNISG 101 (455)
T ss_pred CccccccEEEEEEEEEEEEeC-CCCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCCCCEEEECCccc
Confidence 347788999999999999998 589999999993 23 3789999999999999999999999999999999
Q ss_pred ---CCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecc
Q 017581 86 ---HKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (369)
Q Consensus 86 ---g~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~ 162 (369)
|++++||||++|||||+|++|+|||+.++ +..
T Consensus 102 ~~~~~~~~v~vg~~llGRvid~~G~piDg~~~---------------~~~------------------------------ 136 (455)
T PRK07960 102 EGLQSGKQLPLGPALLGRVLDGSGKPLDGLPA---------------PDT------------------------------ 136 (455)
T ss_pred ccCCCceEEECCcccccCEECCCccccCCCCC---------------CCC------------------------------
Confidence 99999999999999999999999998531 100
Q ss_pred cccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeecccc
Q 017581 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFP 241 (369)
Q Consensus 163 ~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~p 241 (369)
.++||+..++ ++++|..+++++.||||+||.|+|
T Consensus 137 ---------------------------------------------~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~ 171 (455)
T PRK07960 137 ---------------------------------------------GETGALITPPFNPLQRTPIEHVLDTGVRAINALLT 171 (455)
T ss_pred ---------------------------------------------CccccccCCCcChHHhcccccchhccceeeeeccc
Confidence 0245665444 489999999999999999999999
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~ 321 (369)
+++|||++|||++|+|||||+++|+++.+++++|+++||+|++|+.+|++.+ .+.+.+++++||+|++|+
T Consensus 172 I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~----------~~~~~~~~tvVv~~~ad~ 241 (455)
T PRK07960 172 VGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENI----------LGAEGRARSVVIAAPADV 241 (455)
T ss_pred ccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhh----------cCcCCCceEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999875 567789999999999999
Q ss_pred CHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+++|++++++|+++||||||+|+|||+++||+||||+|+||||.++|
T Consensus 242 ~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~g 289 (455)
T PRK07960 242 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIG 289 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999886
No 37
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.7e-58 Score=466.35 Aligned_cols=247 Identities=29% Similarity=0.462 Sum_probs=226.3
Q ss_pred eEEEEEECcEEEEeecCCCccccEEEEc---CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCcccc
Q 017581 22 GYVRKVSGPVVIADGMNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGIL 98 (369)
Q Consensus 22 G~V~~I~G~ii~v~gl~~~~igE~v~i~---~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LL 98 (369)
|+|++|.|.+++++|. ++++||+|.+. ++.+.|||++++++.+.+++|++++||+.|++|.+||+++++|+|++||
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lL 79 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLL 79 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhc
Confidence 7999999999999985 89999999994 3348999999999999999999999999999999999999999999999
Q ss_pred ceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCce
Q 017581 99 GNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKV 178 (369)
Q Consensus 99 GRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v 178 (369)
|||+|++|+|||+.++ +.
T Consensus 80 GRVid~~G~plD~~~~---------------~~----------------------------------------------- 97 (413)
T TIGR03497 80 GRVLDGLGRPLDGEGP---------------II----------------------------------------------- 97 (413)
T ss_pred CCEEcCCCCcccCCCC---------------CC-----------------------------------------------
Confidence 9999999999998421 00
Q ss_pred EEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCC
Q 017581 179 TYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCG 257 (369)
Q Consensus 179 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~G 257 (369)
..++||++.++ ++++|..++++|.||+++||.++|+++|||++|||++|+|
T Consensus 98 ----------------------------~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~G 149 (413)
T TIGR03497 98 ----------------------------GEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVG 149 (413)
T ss_pred ----------------------------CCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCC
Confidence 01356776555 4899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHH
Q 017581 258 KTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337 (369)
Q Consensus 258 KstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiA 337 (369)
||||+++|+++.+++..++++||||++|+++|+++. .+...++|+++|+||+|+|+.+|++++++|+|+|
T Consensus 150 KTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~----------l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiA 219 (413)
T TIGR03497 150 KSTLLGMIARNAKADINVIALIGERGREVRDFIEKD----------LGEEGLKRSVVVVATSDQPALMRLKAAFTATAIA 219 (413)
T ss_pred HHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHH----------hcccccceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999862 2334589999999999999999999999999999
Q ss_pred HHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 338 Eyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||||++|+||||++|||||||+|+||||.++|
T Consensus 220 Eyfr~~G~~Vll~~Dsltr~A~A~rEisl~~g 251 (413)
T TIGR03497 220 EYFRDQGKDVLLMMDSVTRFAMAQREIGLAVG 251 (413)
T ss_pred HHHHHCCCCEEEEEcCcHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999886
No 38
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.7e-58 Score=464.26 Aligned_cols=252 Identities=24% Similarity=0.400 Sum_probs=228.6
Q ss_pred cCceeEeEEEEEECcEEEEeecCCCccccEEEEcC----CcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEE
Q 017581 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH----DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (369)
Q Consensus 16 ~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~----~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~V 91 (369)
...+.+|+|++|.|++++++|+. +++||+|.|.. +.+.|||++++++++.+++|++++||+.|++|.+|+++++|
T Consensus 14 ~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~v 92 (434)
T PRK08472 14 NLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNI 92 (434)
T ss_pred CcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCceEE
Confidence 34788999999999999999974 99999999953 23899999999999999999999999999999999999999
Q ss_pred ecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCC
Q 017581 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (369)
Q Consensus 92 pvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~ 171 (369)
|+|++|||||+|++|+|||+.++. ..
T Consensus 93 ~vg~~llGRViD~~G~plD~~g~~---------------~~--------------------------------------- 118 (434)
T PRK08472 93 PVGRNLLGRVVDPLGRPIDGKGAI---------------DY--------------------------------------- 118 (434)
T ss_pred EcChhhcCCEECCCCCcccCCCCC---------------Cc---------------------------------------
Confidence 999999999999999999984310 00
Q ss_pred CCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEee
Q 017581 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (369)
Q Consensus 172 ~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~I 250 (369)
.++||+..++ ++++|.+++++|.||+++||.++|+.+||+++|
T Consensus 119 ------------------------------------~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i 162 (434)
T PRK08472 119 ------------------------------------ERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGI 162 (434)
T ss_pred ------------------------------------ccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEE
Confidence 0235665444 489999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 251 fg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
||+||+|||||+++|+++.++++++|++||+|++|+.+|++.. . .+.++++++|+||+|+||++|+.++
T Consensus 163 ~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~----------l-~~~l~~tvvV~atsddsp~~R~~~~ 231 (434)
T PRK08472 163 FAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKN----------L-GGDLENTVIVVATSDDSPLMRKYGA 231 (434)
T ss_pred ECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHH----------h-cCcccceEEEEECCCCCHHHhhHHH
Confidence 9999999999999999999999999999999999999998752 2 2338999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|+++||||||+|+||||++|||||||+|+||||.++|
T Consensus 232 ~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l~~g 270 (434)
T PRK08472 232 FCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALG 270 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999886
No 39
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1.8e-57 Score=462.26 Aligned_cols=253 Identities=30% Similarity=0.431 Sum_probs=229.4
Q ss_pred CceeEeEEEEEECcEEEEeecCCCccccEEEEc----CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEe
Q 017581 17 KESEYGYVRKVSGPVVIADGMNGAAMYELVRVG----HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVE 92 (369)
Q Consensus 17 ~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~----~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vp 92 (369)
..+.+|+|++|.|+++++.+ +.+++||+|.|. ++.+.|||++++++.+.+++|++++||++|++|.+||++++||
T Consensus 20 ~~~~~G~v~~i~G~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~ 98 (440)
T TIGR01026 20 LVKRVGRVTKVKGLLIEAVG-PQASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIK 98 (440)
T ss_pred ccceeeEEEEEEeeEEEEEc-CCCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 37889999999999999987 589999999995 2238999999999999999999999999999999999999999
Q ss_pred cCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCC
Q 017581 93 LGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPP 172 (369)
Q Consensus 93 vG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~ 172 (369)
+|++|||||+|++|+|||+.+. ++..
T Consensus 99 vg~~llGRVid~~G~plD~~~~--------------~~~~---------------------------------------- 124 (440)
T TIGR01026 99 VGDGLLGRVLDGLGKPIDGKGK--------------FLDN---------------------------------------- 124 (440)
T ss_pred cChhhhhceecCCCcccCCCCC--------------CCCC----------------------------------------
Confidence 9999999999999999998420 0000
Q ss_pred CCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeec
Q 017581 173 DAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIP 251 (369)
Q Consensus 173 ~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~If 251 (369)
..+||+..++ ++++|.+++++|.||+++||.++||++|||++||
T Consensus 125 -----------------------------------~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~ 169 (440)
T TIGR01026 125 -----------------------------------VETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIF 169 (440)
T ss_pred -----------------------------------ccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEE
Confidence 0234554333 4889999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhH
Q 017581 252 GAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIY 331 (369)
Q Consensus 252 g~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~ 331 (369)
|++|+|||||+++|+++.++++.+|++||+|++|+.+|+++. .+.+.++++++|++++|+||++|+++|+
T Consensus 170 G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~----------~~~~~l~~tvvv~~~~d~~p~~r~~~~~ 239 (440)
T TIGR01026 170 AGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHD----------LGEEGLKRSVVVVATSDQSPLLRLKGAY 239 (440)
T ss_pred CCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHH----------hcccccceEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999764 4556799999999999999999999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 332 TGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 332 ~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+++|||||++|+||||++|||||||+|+||||.++|
T Consensus 240 ~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~g 277 (440)
T TIGR01026 240 VATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAG 277 (440)
T ss_pred HHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987
No 40
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.8e-57 Score=459.30 Aligned_cols=255 Identities=26% Similarity=0.423 Sum_probs=229.5
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEcC----CcEE--EEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEE
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH----DNLI--GEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~----~~~~--geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~V 91 (369)
.+.+|+|++|.|+++++++ +++++||+|+|.. +.+. +||++++++.+.+++|++++|++.|++|.+++++++|
T Consensus 4 ~~~~g~v~~i~g~~i~~~~-~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v 82 (428)
T PRK08149 4 LQRLAHPLRIQGPIIEAEL-PDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSV 82 (428)
T ss_pred eeeeeEEEEEEeeEEEEEE-CCCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEE
Confidence 3568999999999999996 6899999999941 2355 8999999999999999999999999999999999999
Q ss_pred ecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCC
Q 017581 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (369)
Q Consensus 92 pvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~ 171 (369)
|+|++|||||+|++|+|||+.+ +++. +. |
T Consensus 83 ~vg~~llGrv~d~~G~piD~~~-------------~~~~---------~~------------------------~----- 111 (428)
T PRK08149 83 WVGEALLGAVLDPTGKIVERFD-------------APPT---------VG------------------------P----- 111 (428)
T ss_pred EeChhhcCCeeCCCCCCcCCCC-------------CCcc---------cc------------------------c-----
Confidence 9999999999999999999842 0000 00 0
Q ss_pred CCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEee
Q 017581 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (369)
Q Consensus 172 ~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~I 250 (369)
-..+||+..++ ++++|..++++|.||+++||.++|+++|||++|
T Consensus 112 -----------------------------------~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I 156 (428)
T PRK08149 112 -----------------------------------ISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGI 156 (428)
T ss_pred -----------------------------------ccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEE
Confidence 01246775444 589999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 251 fg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
||+||+|||||+++|+++.++|++|+++||+|++|+.+|++++ .+...++++++|+|++|+|+++|++++
T Consensus 157 ~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~----------l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 157 FASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESL----------RASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred ECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHH----------hhcccccceEEEEECCCCCHHHHHhHH
Confidence 9999999999999999999999999999999999999999885 566789999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|+++|||||++|+||||++|||||||+|+||||.++|
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~g 265 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAG 265 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcC
Confidence 999999999999999999999999999999999999886
No 41
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7e-57 Score=456.32 Aligned_cols=264 Identities=28% Similarity=0.420 Sum_probs=236.4
Q ss_pred hhhhhcCCC-cccCceeEeEEEEEECcEEEEeecC-CCccccEEEEcC--CcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 5 YGARLTTFE-DEEKESEYGYVRKVSGPVVIADGMN-GAAMYELVRVGH--DNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~G~V~~I~G~ii~v~gl~-~~~igE~v~i~~--~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
+.+.++.|+ +....+.+|+|++|.|+++++.|++ ++++||+|.|.. +...|||++|+++.+.+++|+++.||+.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~ 89 (450)
T PRK06002 10 LAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGD 89 (450)
T ss_pred HHHHHHhcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCCcEEEEEEEEeCCeEEEEEccCCcCCCCCC
Confidence 567888999 6666889999999999999999975 799999999953 247899999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|.+ ++++++|+|++|||||+|++|+|||+.++ +...
T Consensus 90 ~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~---------------~~~~--------------------------- 126 (450)
T PRK06002 90 AVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGP---------------LAPG--------------------------- 126 (450)
T ss_pred EEEe-CCCceeecCcccccCEECCCCcCCCCCCC---------------CCCC---------------------------
Confidence 9999 67899999999999999999999998431 1000
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l 239 (369)
..+||+..++ ++++|+.++++|.||+++||.+
T Consensus 127 -----------------------------------------------~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L 159 (450)
T PRK06002 127 -----------------------------------------------TRPMSIDATAPPAMTRARVETGLRTGVRVIDIF 159 (450)
T ss_pred -----------------------------------------------cceeeccCCCCCCeEeecceEEcCCCcEEeeee
Confidence 0135665444 4899999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
+||++|||++|||+||||||||+++|+++.+++.++|+++|||++|+.+|.+.. .. ..+.++++|++++
T Consensus 160 ~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~----------l~-~~r~rtI~vV~qs 228 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT----------LA-DNLKKAVAVVATS 228 (450)
T ss_pred ceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH----------HH-HhhCCeEEEEEcC
Confidence 999999999999999999999999999999999999999999999999998753 12 3378999999999
Q ss_pred CCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 320 ~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+++|++++++|+++|||||++|+|||+++|||||||+|+||||.++|
T Consensus 229 d~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~g 278 (450)
T PRK06002 229 DESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAG 278 (450)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999886
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1e-56 Score=456.51 Aligned_cols=252 Identities=29% Similarity=0.437 Sum_probs=227.0
Q ss_pred CceeEeEEEEEECcEEEEeecCCCccccEEEEc---CC--cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEE
Q 017581 17 KESEYGYVRKVSGPVVIADGMNGAAMYELVRVG---HD--NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (369)
Q Consensus 17 ~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~---~~--~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~V 91 (369)
..+.+|+|++|.|+++++++ +.+++||+|.+. ++ .+.|||++|+++++.+++|++++||+.|++|.+||++++|
T Consensus 15 ~~~~~G~v~~i~G~~i~~~~-~~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g~~V~~tg~~~~v 93 (438)
T PRK07721 15 PYKRYGKVSRVIGLMIESKG-PESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEV 93 (438)
T ss_pred ccceecEEEEEECcEEEEEE-CCCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCccEE
Confidence 37789999999999999997 579999999994 22 3899999999999999999999999999999999999999
Q ss_pred ecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCC
Q 017581 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (369)
Q Consensus 92 pvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~ 171 (369)
|||++|||||+|++|+|||+.+.. .+
T Consensus 94 ~vg~~llGRv~d~~G~plD~~~~~-------~~----------------------------------------------- 119 (438)
T PRK07721 94 KVGSGLIGQVLDALGEPLDGSALP-------KG----------------------------------------------- 119 (438)
T ss_pred EechhhcCCEECcCCCccCCCCCC-------Cc-----------------------------------------------
Confidence 999999999999999999974200 00
Q ss_pred CCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEee
Q 017581 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (369)
Q Consensus 172 ~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~I 250 (369)
..+||+..++ ++++|.+++++|.||+++||.++++.+||+++|
T Consensus 120 ------------------------------------~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I 163 (438)
T PRK07721 120 ------------------------------------LAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGI 163 (438)
T ss_pred ------------------------------------cccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEE
Confidence 0124454333 478999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 251 fg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
+|++|+|||||+++|+++.+++..+++++|||++|+.+|+++. .....+.++++++|++|+|+.+|++++
T Consensus 164 ~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~----------l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 164 FAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERD----------LGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred ECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhh----------cChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998762 234558999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|+|+||||||+|+||||++|||||||+|+||||.++|
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~g 272 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVG 272 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999886
No 43
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=1.5e-55 Score=446.71 Aligned_cols=253 Identities=34% Similarity=0.492 Sum_probs=231.4
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEc---CCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecC
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELG 94 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~---~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG 94 (369)
.+.+|+|++|.|+++++++ +++.+||+|.|. ++.+.|||++++++++.+++|++++||+.|++|.+||++++||+|
T Consensus 3 ~~~~G~V~~v~g~~v~v~~-~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (422)
T TIGR02546 3 VRVRGRVTEVSGTLLKAVL-PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVG 81 (422)
T ss_pred cceeEEEEEEECcEEEEEE-CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeC
Confidence 4578999999999999985 789999999995 234899999999999999999999999999999999999999999
Q ss_pred ccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCC
Q 017581 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (369)
Q Consensus 95 ~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~ 174 (369)
++|||||+|++|+|||+.++ +. ..
T Consensus 82 ~~lLGrViD~~G~plD~~~~---------------~~----------------------------------------~~- 105 (422)
T TIGR02546 82 EALLGRVLDGFGRPLDGKGE---------------LP----------------------------------------AG- 105 (422)
T ss_pred hhhccCEeCCCCCcccCCCC---------------CC----------------------------------------CC-
Confidence 99999999999999998421 00 00
Q ss_pred CCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCC
Q 017581 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (369)
Q Consensus 175 ~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~ 253 (369)
..++||++.++ ++++|.+++++|.||+++||.++|+++|||++|||+
T Consensus 106 --------------------------------~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~ 153 (422)
T TIGR02546 106 --------------------------------EIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAG 153 (422)
T ss_pred --------------------------------CceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECC
Confidence 00357887544 599999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHH
Q 017581 254 FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333 (369)
Q Consensus 254 sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a 333 (369)
+|+|||||+++|+++.+++.++|++||++++|+.+|++.+ .+.+.++++++++|++++|+++|++++++|
T Consensus 154 sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~----------~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a 223 (422)
T TIGR02546 154 AGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHH----------LGEEGRKRSVLVVSTSDRPSLERLKAAYTA 223 (422)
T ss_pred CCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHH----------hccccccceEEEeccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874 566789999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 334 ITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 334 ~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+++|||||++|+|||+++||+||||+|+||||.++|
T Consensus 224 ~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~g 259 (422)
T TIGR02546 224 TAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAG 259 (422)
T ss_pred HHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999886
No 44
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.1e-55 Score=444.68 Aligned_cols=263 Identities=24% Similarity=0.342 Sum_probs=236.2
Q ss_pred hhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEc
Q 017581 6 GARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRT 85 (369)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~t 85 (369)
.++|..|-.....+.+|+|++|.|.++++.| +++++||+|.+.++.+.|||++++++.+.+++|++++||+.|++|.+|
T Consensus 7 ~~~~~~~~~~~~~~~~g~v~~~~g~~~~~~g-~~~~ige~~~i~~~~~~~eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~ 85 (432)
T PRK06793 7 NQKWNTFIETPFYTKVGKVHSVQEQFFVAKG-PKAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLI 85 (432)
T ss_pred hhHHHHHhcCCccceeeEEEEEEEEEEEEEc-CCCCcCCEEEECCCCEEEEEEEecCCcEEEEEccCccCCCCCCEEEEC
Confidence 4677777777778899999999999999998 689999999995345899999999999999999999999999999999
Q ss_pred CCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeeccccc
Q 017581 86 HKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQ 165 (369)
Q Consensus 86 g~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~ 165 (369)
+++++||||++|||||+|++|+|||+.+.. ..
T Consensus 86 ~~~~~v~vg~~~lGrV~d~~G~piD~~~~~---------------~~--------------------------------- 117 (432)
T PRK06793 86 AEDVVIPRGNHLLGKVLSANGEVLNEEAEN---------------IP--------------------------------- 117 (432)
T ss_pred CCccEEEcCHhhccCEECcCCccCCCCCCC---------------CC---------------------------------
Confidence 999999999999999999999999984210 00
Q ss_pred ccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccC
Q 017581 166 HHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVL 244 (369)
Q Consensus 166 ~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~ 244 (369)
.++||+..++ ++++|+.+++++.||+++||.++|+++
T Consensus 118 ------------------------------------------~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~ 155 (432)
T PRK06793 118 ------------------------------------------LQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGI 155 (432)
T ss_pred ------------------------------------------cccccccCCCCCchheechhhccCCCCEEEeccceecC
Confidence 0234554444 489999999999999999999999999
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHH
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~ 324 (369)
|||++|||++|+|||||+++|+++.+++..+++++|||++|+++|++.. .+...++++++|++++|+|+.
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~----------l~~~gl~~tvvv~~tsd~s~~ 225 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKE----------LGEEGMRKSVVVVATSDESHL 225 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHHH----------hhhcccceeEEEEECCCCCHH
Confidence 9999999999999999999999999999889999999999999998752 223349999999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 325 ~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|++++++|+++|||||++|+|||+++||+||||+|+||||.++|
T Consensus 226 ~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~ 270 (432)
T PRK06793 226 MQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVK 270 (432)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998875
No 45
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.1e-55 Score=443.72 Aligned_cols=260 Identities=24% Similarity=0.373 Sum_probs=230.0
Q ss_pred hcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEc
Q 017581 9 LTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRT 85 (369)
Q Consensus 9 ~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~t 85 (369)
+++.......+.+|+|++|.|.++++.|+ .+++||+|+|. ++ .+.|||++|+++.+.+|+|++++|++.|++|.+|
T Consensus 6 ~~~~~~~~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~~ 84 (434)
T PRK07196 6 LKSIENIHLARVAGRLVRVTGLLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGARVFPS 84 (434)
T ss_pred HhhhccCCccceeeEEEEEEcCEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCCCEEEEC
Confidence 33444444578899999999999999985 79999999993 33 4899999999999999999999999999999999
Q ss_pred CCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeeccccc
Q 017581 86 HKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQ 165 (369)
Q Consensus 86 g~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~ 165 (369)
|++++||||++|||||+|++|+|||+.++ +..+
T Consensus 85 ~~~~~v~vg~~llGrv~d~~G~pld~~~~---------------~~~~-------------------------------- 117 (434)
T PRK07196 85 EQDGELLIGDSWLGRVINGLGEPLDGKGQ---------------LGGS-------------------------------- 117 (434)
T ss_pred CCccEEEcCccccCCeeCcCCCCcCCCCC---------------CCCC--------------------------------
Confidence 99999999999999999999999998531 1000
Q ss_pred ccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccC
Q 017581 166 HHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVL 244 (369)
Q Consensus 166 ~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~ 244 (369)
.+||+..++ ++++|.++++||.||+++||.++|+++
T Consensus 118 -------------------------------------------~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~ 154 (434)
T PRK07196 118 -------------------------------------------TPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGK 154 (434)
T ss_pred -------------------------------------------ceeeccCCCCChHHhcccccccccceeeccceEeEec
Confidence 122333222 368999999999999999999999999
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHH
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~ 324 (369)
||+++|||++|+|||||+++|+++.+++++++++||++++|+++|.+.. .....+.|++++++++++++.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~----------l~~~gl~rsvvv~~~~d~s~~ 224 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHS----------LQAAGMAKSVVVAAPADESPL 224 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHH----------hhhcccceEEEEEecCCCChh
Confidence 9999999999999999999999999999989999999999999999763 233448899999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 325 ~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+.++++++++||||+++|+||||++||+||||+|+||||.++|
T Consensus 225 ~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~~g 269 (434)
T PRK07196 225 MRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLG 269 (434)
T ss_pred hhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHhcC
Confidence 999999999999999999999999999999999999999999886
No 46
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=3.9e-55 Score=419.28 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=142.5
Q ss_pred ceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcC------CCeEEEEeeccc
Q 017581 210 AWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN------SDTVVYVGCGER 282 (369)
Q Consensus 210 ~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~------~d~vV~~~iGer 282 (369)
+||++.++ ++++|.++++||+||||+||+|+||++|||++|||++|+|||+|+.||+++++ +|+|||++||||
T Consensus 33 ~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR 112 (276)
T cd01135 33 YLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGIT 112 (276)
T ss_pred eeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccc
Confidence 46776554 58999999999999999999999999999999999999999999999999986 789999999999
Q ss_pred chhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHC-CCcEEEEecchHHHHHHH
Q 017581 283 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEAL 361 (369)
Q Consensus 283 ~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~-G~~VLli~Dsltr~A~A~ 361 (369)
++|+++|++++ .+.++|+||++|++++|+|+++|++++|+|+|+|||||++ |+|||+++|||||||+|+
T Consensus 113 ~rev~e~~~~~----------~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~ 182 (276)
T cd01135 113 MEDARFFKDDF----------EETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEAL 182 (276)
T ss_pred cHHHHHHHHHh----------hhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHH
Confidence 99999999986 6788999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHhhccC
Q 017581 362 REISGRLG 369 (369)
Q Consensus 362 rEiS~~lg 369 (369)
||||.++|
T Consensus 183 rEisl~~g 190 (276)
T cd01135 183 REISAARE 190 (276)
T ss_pred HHHHhccC
Confidence 99999987
No 47
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=3.3e-53 Score=406.42 Aligned_cols=151 Identities=34% Similarity=0.535 Sum_probs=142.5
Q ss_pred cceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCeEEEEeecccch
Q 017581 209 QAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYVGCGERGN 284 (369)
Q Consensus 209 ~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~vV~~~iGer~~ 284 (369)
++||++.++ ++++|.+++++|.||||+||.|+||+||||++|||++|+|||||+++++++.. .++|||++||||++
T Consensus 32 ~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 32 KTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred ccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH
Confidence 468887666 49999999999999999999999999999999999999999999999987654 68899999999999
Q ss_pred hhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHC-CCcEEEEecchHHHHHHHHH
Q 017581 285 EMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALRE 363 (369)
Q Consensus 285 ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~-G~~VLli~Dsltr~A~A~rE 363 (369)
|+++|+++| .+.++|+||+||+|++|+|+.+|++++++|+++|||||++ |+|||+++|||||||+|+||
T Consensus 112 Ev~e~~~~~----------~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~re 181 (274)
T cd01133 112 EGNDLYHEM----------KESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSE 181 (274)
T ss_pred HHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHH
Confidence 999999986 6778999999999999999999999999999999999998 99999999999999999999
Q ss_pred HhhccC
Q 017581 364 ISGRLG 369 (369)
Q Consensus 364 iS~~lg 369 (369)
+|.++|
T Consensus 182 is~~~g 187 (274)
T cd01133 182 VSALLG 187 (274)
T ss_pred HHHHcC
Confidence 999887
No 48
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=9.8e-53 Score=402.67 Aligned_cols=151 Identities=28% Similarity=0.445 Sum_probs=142.7
Q ss_pred cceeccCCCC-ccccccccceeccCceeeeccccccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchh
Q 017581 209 QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNE 285 (369)
Q Consensus 209 ~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~e 285 (369)
++||++.++| +++|..++++|.||||+||.|+||+||||++|||++|+|||+| +.+|+++.++|+ |||++||||++|
T Consensus 32 ~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~e 111 (274)
T cd01132 32 ERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKAST 111 (274)
T ss_pred ceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHH
Confidence 4678876665 8999999999999999999999999999999999999999999 578999988887 599999999999
Q ss_pred hhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHh
Q 017581 286 MAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365 (369)
Q Consensus 286 v~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS 365 (369)
+++|+++| ++.++++|+++|+|++|+|+.+|++++++|+++|||||++|+|||+++|||||||+||||+|
T Consensus 112 v~e~~~~~----------~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 112 VAQVVKTL----------EEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHH----------HhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 99999986 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC
Q 017581 366 GRLG 369 (369)
Q Consensus 366 ~~lg 369 (369)
.+||
T Consensus 182 l~~g 185 (274)
T cd01132 182 LLLR 185 (274)
T ss_pred HhcC
Confidence 9986
No 49
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3.8e-51 Score=414.75 Aligned_cols=256 Identities=29% Similarity=0.439 Sum_probs=226.1
Q ss_pred cCceeEeEEEEEECcEEEEeecCCCccccEEEEcC-C--cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEe
Q 017581 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-D--NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVE 92 (369)
Q Consensus 16 ~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~-~--~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vp 92 (369)
...+.+|+|++|.|.++++.| +.+++||+|.+.. + .+.|||++++++.+.+++|++++||+.|++|.++|++++||
T Consensus 19 ~~~~~~G~v~~i~g~~~~~~~-~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~ 97 (442)
T PRK06315 19 QLTTVVGRITEVVGMLIKAVV-PDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIR 97 (442)
T ss_pred CcceeccEEEEEECCEEEEEE-CCcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 347788999999999999997 5799999999942 2 38999999999999999999999999999999999999999
Q ss_pred cCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCC
Q 017581 93 LGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPP 172 (369)
Q Consensus 93 vG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~ 172 (369)
||++|||||+|++|+|||+.. +| ++. .
T Consensus 98 vg~~llGrv~d~~G~pld~~~---------~~----~~~---------------------------------------~- 124 (442)
T PRK06315 98 AGNGLLGRVLNGLGEPIDTET---------KG----PLE---------------------------------------N- 124 (442)
T ss_pred ecccccCCEEeccCccccccc---------CC----Ccc---------------------------------------c-
Confidence 999999999999999999721 00 000 0
Q ss_pred CCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeec
Q 017581 173 DAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIP 251 (369)
Q Consensus 173 ~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~If 251 (369)
..++||+..++ ++++|.++++||.||+++||.++|+++|||++||
T Consensus 125 ----------------------------------~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~ 170 (442)
T PRK06315 125 ----------------------------------VDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIF 170 (442)
T ss_pred ----------------------------------ccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEE
Confidence 01346765444 4899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHhhc-CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhh
Q 017581 252 GAFGCGKTVISQALSKYS-NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (369)
Q Consensus 252 g~sG~GKstLl~~ia~~~-~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~ 330 (369)
|++|||||||+.+|+++. .++..++++||||++|+.+|.+.. + ++ ..++++++|+||++++|+.|+.++
T Consensus 171 G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~------l---~~-~g~~~svvvvats~q~p~~rlnp~ 240 (442)
T PRK06315 171 AGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGD------L---GE-EGMKRSVIVVSTSDQSSQLRLNAA 240 (442)
T ss_pred CCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHH------H---Hh-cCCceEEEEEeCCCCCHHHHhhHH
Confidence 999999999999999877 567788999999999999998762 1 33 458999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 331 ~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|+++|||||++|++||+++||+||||+|+||+|.++|
T Consensus 241 ~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~g 279 (442)
T PRK06315 241 YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAG 279 (442)
T ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCC
Confidence 999999999999999999999999999999999998764
No 50
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-48 Score=381.54 Aligned_cols=252 Identities=33% Similarity=0.492 Sum_probs=223.1
Q ss_pred eEeEEEEEECcEEEEeecC---CCccccEEEEcCCc---EEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCceEEe
Q 017581 20 EYGYVRKVSGPVVIADGMN---GAAMYELVRVGHDN---LIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVE 92 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~---~~~igE~v~i~~~~---~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vp 92 (369)
..|+|++|.|+++.+++-. -+.+++.+++..+. +..||.. +.++.|+.+.++.++||.+|+.|..||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 3599999999999999842 37899999987543 6788876 566689999999999999999999999999999
Q ss_pred cCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCC
Q 017581 93 LGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPP 172 (369)
Q Consensus 93 vG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~ 172 (369)
||++.||||+|.+|+|||+.++. .. .
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~---------------~~---------------------------------------~ 107 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPI---------------KA---------------------------------------E 107 (468)
T ss_pred cchhhcccchhccCCcccccCCC---------------Cc---------------------------------------c
Confidence 99999999999999999984211 00 0
Q ss_pred CCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCc-cccccccceeccCceeeeccccccCCCeEeec
Q 017581 173 DAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPV-SSKLAADTPLLTGQRVLDALFPSVLGGTCAIP 251 (369)
Q Consensus 173 ~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~-~~r~~~~~~l~TGi~aID~l~pi~~GQr~~If 251 (369)
-..+||+++++|. .+...-++.|+||||+||.|+|+.||.|+|||
T Consensus 108 ----------------------------------~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLF 153 (468)
T COG0055 108 ----------------------------------DFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLF 153 (468)
T ss_pred ----------------------------------ccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeee
Confidence 0147889887774 44556689999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHhhc---CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhh
Q 017581 252 GAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328 (369)
Q Consensus 252 g~sG~GKstLl~~ia~~~---~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~ 328 (369)
|++|+|||+|++.++++. +.+..||+++|||.||..+++.++ .+.+.+++|++|...+++||..|++
T Consensus 154 GGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em----------~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 154 GGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred ccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHH----------HhcCCCCceeEEEeecCCCCcceee
Confidence 999999999999887764 568899999999999999999986 7789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHC-CCcEEEEecchHHHHHHHHHHhhccC
Q 017581 329 SIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 329 a~~~a~tiAEyfr~~-G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
.+.+++|+||||||+ |+||||++|++.||.+|.+|+|.+||
T Consensus 224 ValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLG 265 (468)
T COG0055 224 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLG 265 (468)
T ss_pred ehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhc
Confidence 999999999999975 99999999999999999999999998
No 51
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=6.3e-46 Score=364.50 Aligned_cols=151 Identities=32% Similarity=0.410 Sum_probs=142.7
Q ss_pred cceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhh
Q 017581 209 QAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMA 287 (369)
Q Consensus 209 ~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~ 287 (369)
++||++.++ ++++|..++++|.||+++||.++|+++|||++|||++|+|||||+++|+++.+++++++++||+|++|+.
T Consensus 32 ~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~ 111 (326)
T cd01136 32 VRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVR 111 (326)
T ss_pred ccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHH
Confidence 356776555 4899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhc
Q 017581 288 EVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGR 367 (369)
Q Consensus 288 ~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~ 367 (369)
+|.+.+ .+.+.+++++||+|++|+|+.+|++++++|+++|||||++|+|||+++|||||||+|+||+|.+
T Consensus 112 ~~~~~~----------~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~ 181 (326)
T cd01136 112 EFIEKD----------LGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLA 181 (326)
T ss_pred HHHHHH----------HhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHHh
Confidence 999875 4677899999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 017581 368 LG 369 (369)
Q Consensus 368 lg 369 (369)
+|
T Consensus 182 ~g 183 (326)
T cd01136 182 AG 183 (326)
T ss_pred cC
Confidence 86
No 52
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=3.9e-45 Score=359.76 Aligned_cols=252 Identities=25% Similarity=0.411 Sum_probs=225.5
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCe-EEEcCCceEEec
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDP-VLRTHKPLSVEL 93 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~-V~~tg~~l~Vpv 93 (369)
.++|-+|++|.|+++.|++..++.+||+|+|. ++ ...|+|+.++.+.+.+|+|+.|.|+...+. |+++|+++++|+
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v 83 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV 83 (463)
T ss_pred cceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence 56889999999999999999999999999996 23 479999999999999999999999999866 999999999999
Q ss_pred CccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCC
Q 017581 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (369)
Q Consensus 94 G~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~ 173 (369)
+++||||+|||+|+|||+.|+.. ++|.+ ||.|. ++|
T Consensus 84 s~dllGRifnG~G~PiDggp~i~----------------------------~e~~~---dI~g~-----------~~N-- 119 (463)
T COG1156 84 SEDLLGRIFNGSGKPIDGGPEIV----------------------------PEDRL---DINGA-----------PIN-- 119 (463)
T ss_pred cHHhhhhhhcCCCCcCCCCCcCC----------------------------CCccc---ccCCC-----------CCC--
Confidence 99999999999999999965321 11111 22221 223
Q ss_pred CCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCC
Q 017581 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (369)
Q Consensus 174 ~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~ 253 (369)
+..|..++++++|||++||+|.++.+|||++||++
T Consensus 120 ---------------------------------------------P~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSg 154 (463)
T COG1156 120 ---------------------------------------------PYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSG 154 (463)
T ss_pred ---------------------------------------------chhhhChhhHhhcCccHHhhhhhhhcccccccccC
Confidence 35788999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcCC------CeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHh
Q 017581 254 FGCGKTVISQALSKYSNS------DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (369)
Q Consensus 254 sG~GKstLl~~ia~~~~~------d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~ 327 (369)
||..++.|+.+||+|+.. ..+||+++|-...+...|.++| ++.+++++++++.|.+++|+++|.
T Consensus 155 SGlphN~LaaqIarQA~v~~~~e~favVfaamGit~eea~fF~~~f----------e~tGal~r~vlflnlA~dp~vEri 224 (463)
T COG1156 155 SGLPHNELAAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEF----------EETGALDRAVLFLNLADDPAVERI 224 (463)
T ss_pred CCCchHHHHHHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHH----------HhhhhhhhhHhhhhccCCCceeEe
Confidence 999999999999999865 3599999999999999999987 788999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-HCCCcEEEEecchHHHHHHHHHHhhcc
Q 017581 328 ASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRL 368 (369)
Q Consensus 328 ~a~~~a~tiAEyfr-~~G~~VLli~Dsltr~A~A~rEiS~~l 368 (369)
..|.+|+|+||||+ +.++|||+|+-|+|.||+|+||||...
T Consensus 225 ~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaar 266 (463)
T COG1156 225 ITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAR 266 (463)
T ss_pred cchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhh
Confidence 99999999999999 789999999999999999999999753
No 53
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=6.7e-40 Score=312.26 Aligned_cols=262 Identities=24% Similarity=0.350 Sum_probs=228.3
Q ss_pred hhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCC-Ce
Q 017581 6 GARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVN-DP 81 (369)
Q Consensus 6 ~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G-~~ 81 (369)
.+-+++|.+..+. .|.+|..|+|+++....+..+++.|+|.+. ++ ...|+|+.+.++++.+|+|+.|+|+... +.
T Consensus 10 ~a~~~~~~~~prl-~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~ 88 (489)
T KOG1351|consen 10 TAVIENYTTEPRL-TYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTT 88 (489)
T ss_pred HHHHhccccCCce-eEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccce
Confidence 4567889988776 789999999999999988889999999985 33 4789999999999999999999999976 78
Q ss_pred EEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeec
Q 017581 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (369)
Q Consensus 82 V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~ 161 (369)
|.+||+.++.||++++|||||||.|+|||+.|+...++ ++ ||.|.
T Consensus 89 ~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~ed----------------------------yl---di~gq---- 133 (489)
T KOG1351|consen 89 VEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAED----------------------------YL---DINGQ---- 133 (489)
T ss_pred EEEecccccccccHHHhhhhhcCCCCccCCCCCcChHH----------------------------hh---ccCCC----
Confidence 99999999999999999999999999999865332211 11 33322
Q ss_pred ccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeecccc
Q 017581 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFP 241 (369)
Q Consensus 162 ~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~p 241 (369)
++| +..|..+++.++|||.+||.|..
T Consensus 134 -------pin-----------------------------------------------p~~riypeemiqtgis~idvmns 159 (489)
T KOG1351|consen 134 -------PIN-----------------------------------------------PYARIYPEEMIQTGISAIDVMNS 159 (489)
T ss_pred -------cCC-----------------------------------------------cccccChHHHHHhCchHHhhhhH
Confidence 222 35788999999999999999999
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcC---------------CCeEEEEeecccchhhhHHhhhcccccccCCCCCcC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN---------------SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREE 306 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~---------------~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~ 306 (369)
|.|||+++||+.+|.+++.++.+|.+|+. ...+||+++|..-...+.|...| .+.
T Consensus 160 iargqkipifsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~df----------een 229 (489)
T KOG1351|consen 160 IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDF----------EEN 229 (489)
T ss_pred HhccCccceeecCCCChhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhH----------Hhc
Confidence 99999999999999999999999998861 12589999999877777777766 788
Q ss_pred CCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHH-HCCCcEEEEecchHHHHHHHHHHhhc
Q 017581 307 SVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGR 367 (369)
Q Consensus 307 ~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr-~~G~~VLli~Dsltr~A~A~rEiS~~ 367 (369)
+.|.+++++.|.+++|..+|+..|..|++.||||+ +.++|||+|+.|+|.||+|+||+|+.
T Consensus 230 gsm~~v~lflnlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaa 291 (489)
T KOG1351|consen 230 GSMERVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAA 291 (489)
T ss_pred CCccceEEEEecCCCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 56999999999999999999999963
No 54
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=8.6e-40 Score=314.17 Aligned_cols=258 Identities=29% Similarity=0.439 Sum_probs=212.7
Q ss_pred ceeEeEEEEEECcEEEEeecCC-CccccEEEEc--CCcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCceEEec
Q 017581 18 ESEYGYVRKVSGPVVIADGMNG-AAMYELVRVG--HDNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~-~~igE~v~i~--~~~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vpv 93 (369)
....|+|+.|-|.++.+.+-++ +.+-..+++. +..+..||.+ +.++.++.+.++.|+|+.+|+.|..||.|++|||
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV 128 (521)
T KOG1350|consen 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV 128 (521)
T ss_pred cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeec
Confidence 4568999999999999987543 5565666664 2347788876 5566899999999999999999999999999999
Q ss_pred CccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCC
Q 017581 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (369)
Q Consensus 94 G~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~ 173 (369)
|++.|||++|.+|+|+|..+++. . ..|+
T Consensus 129 G~~tLGRI~NViGePiDerGpi~---------------s---~~~~---------------------------------- 156 (521)
T KOG1350|consen 129 GPETLGRIMNVIGEPIDERGPIK---------------S---KKYS---------------------------------- 156 (521)
T ss_pred CHHHHhhHHHhcCCcccccCCcc---------------c---cccc----------------------------------
Confidence 99999999999999999854221 1 1122
Q ss_pred CCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeeccccccCCCeEeecC
Q 017581 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (369)
Q Consensus 174 ~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg 252 (369)
|++..+| +.+...-.+.|.||||++|.|.|..||.++++||
T Consensus 157 --------------------------------------~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFG 198 (521)
T KOG1350|consen 157 --------------------------------------PIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 198 (521)
T ss_pred --------------------------------------ccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeec
Confidence 3333333 3444445678999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhc---CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhh
Q 017581 253 AFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (369)
Q Consensus 253 ~sG~GKstLl~~ia~~~---~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a 329 (369)
++|+|||+|.+.++|+. +.+..||+++|||.||..+++.++.+-.. + .-.+.-.+..+|+..+++||..|.+.
T Consensus 199 GAGVGKTVlImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gV-I---~l~~~~SKvaLV~GQMNePPGARaRV 274 (521)
T KOG1350|consen 199 GAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGV-I---NLEGETSKVALVYGQMNEPPGARARV 274 (521)
T ss_pred cCCccceeeHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCe-e---eccCCcceEEEEeeccCCCCCceeee
Confidence 99999999999888775 45889999999999999999988632211 0 01223378999999999999999999
Q ss_pred hHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 330 IYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 330 ~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+.+++|+|||||| .|.||||++|++.||-+|..|+|.+||
T Consensus 275 ~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLG 315 (521)
T KOG1350|consen 275 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 315 (521)
T ss_pred eeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhc
Confidence 9999999999997 599999999999999999999999997
No 55
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=5.7e-39 Score=299.24 Aligned_cols=129 Identities=47% Similarity=0.712 Sum_probs=124.3
Q ss_pred cCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcc
Q 017581 231 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK 310 (369)
Q Consensus 231 TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~ 310 (369)
||||+||.|+||++|||++|||++|+|||+|+.+|+++.++|++||++||||++|+.+|++++ ++.+.++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~iGer~~Ev~~~~~~~----------~~~~~~~ 70 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDADVVVYALIGERGREVTEFIEEL----------KGEGALE 70 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTTTEEEEEEESECHHHHHHHHHHH----------HHTTGGG
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcccccceeeeeccccchhHHHHHHHH----------hhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999986 6788999
Q ss_pred eeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 311 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 311 ~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++++|+|++|+|+.+|++++++|+++|||||++|+|||+++||+||||+|+||+|.++|
T Consensus 71 ~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g 129 (215)
T PF00006_consen 71 RTVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLG 129 (215)
T ss_dssp GEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999886
No 56
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=2.4e-35 Score=293.11 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=156.3
Q ss_pred CCCCCCCeEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCc
Q 017581 74 AGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGD 153 (369)
Q Consensus 74 ~Gi~~G~~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~ 153 (369)
.+|+.|+.|..++++ ++++.+||||+|++|+|+|+.. . +.+ |
T Consensus 57 ~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~---~----------------~~~-~--------------- 98 (380)
T PRK12608 57 FNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA---R----------------RPH-F--------------- 98 (380)
T ss_pred hCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc---c----------------ccC-c---------------
Confidence 579999999999998 9999999999999999999731 0 000 0
Q ss_pred ceeeeeecccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCcccccccccee-ccC
Q 017581 154 LYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPL-LTG 232 (369)
Q Consensus 154 i~g~~~e~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l-~TG 232 (369)
.+. .|+ .+.+|..+++++ .++
T Consensus 99 -----------~~~--~pi---------------------------------------------~p~~R~~ie~~~~~~~ 120 (380)
T PRK12608 99 -----------DDL--TPL---------------------------------------------HPRERLRLETGSDDLS 120 (380)
T ss_pred -----------CcC--CCC---------------------------------------------CccccccccccCcchh
Confidence 010 111 245777888887 899
Q ss_pred ceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCC
Q 017581 233 QRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESV 308 (369)
Q Consensus 233 i~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~ 308 (369)
+|+||.|+||++|||++|+|++|||||||+++|++... +|+ |++++||||++|+.+|++.. .
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i----------~---- 186 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSV----------K---- 186 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHH----------h----
Confidence 99999999999999999999999999999999887653 366 69999999999999999762 1
Q ss_pred cceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 309 MKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 309 l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
..++++++|+++..+...+++++++||||+++|+||+|++||+||||+||||++...|
T Consensus 187 ---~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G 244 (380)
T PRK12608 187 ---GEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSG 244 (380)
T ss_pred ---hhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccC
Confidence 2788999999999999999999999999999999999999999999999999998765
No 57
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1e-32 Score=284.16 Aligned_cols=137 Identities=23% Similarity=0.286 Sum_probs=123.6
Q ss_pred CCCcccccccc-ceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhc---CCCe-EEEEeecccchhhhHHh
Q 017581 216 PRPVSSKLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVL 290 (369)
Q Consensus 216 ~~~~~~r~~~~-~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~---~~d~-vV~~~iGer~~ev~~~~ 290 (369)
|..+++|..++ +++.||+|+||+|+||++|||.+||||+||||||||++||++. ++++ |+|++||||.+||.+|.
T Consensus 386 p~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~ 465 (672)
T PRK12678 386 PLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQ 465 (672)
T ss_pred CCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHH
Confidence 44589999998 9999999999999999999999999999999999999999966 5555 67999999999998874
Q ss_pred hhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 291 MDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 291 ~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
.. -+.-||++|+|+|+..|+.++++|+++||||+++|+|||||+|||||||+||||++...|
T Consensus 466 rs-----------------VkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~~~sG 527 (672)
T PRK12678 466 RS-----------------VKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASG 527 (672)
T ss_pred Hh-----------------ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhhcCCC
Confidence 22 123499999999999999999999999999999999999999999999999999986654
No 58
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.97 E-value=4e-33 Score=260.81 Aligned_cols=228 Identities=21% Similarity=0.291 Sum_probs=201.3
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
|+|++++||.++++..+..+.|+|.+|.|+|..+.||.++.-+|+++|.+ +++|+-.+++.+.+.+.+|++..-++.|+
T Consensus 1 ~SsI~EErI~~~~~~a~leEtgrVLsIGdGIArV~GL~nvQAeEmvEFss-GlKgmalnle~~~vg~v~~g~d~~ikeg~ 79 (340)
T KOG1353|consen 1 MSSIFEERIVGDNTSADLEETGRVLSIGDGIARVYGLTNVQAEEMVEFSS-GLKGMALNLEGENVGVVVFGEDSLIKEGD 79 (340)
T ss_pred CchHHHHHhhccccccchhhccceEEEcCceeeeecccccchHHHHhhhc-cccchhccccCCceEEEEEcCcceeccCc
Confidence 79999999999999999999999999999999999999999999999984 58999999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
.|..|+....+|+++.||||+.|++|+|+|+.++. ..
T Consensus 80 ~VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~i---------------~~---------------------------- 116 (340)
T KOG1353|consen 80 TVKRTAAISDVPPLKALLGRVGCALGEPIDGNGKI---------------SA---------------------------- 116 (340)
T ss_pred eEEeeeeeeccCchHHHhhhhhhhhcCeecCCCCc---------------cc----------------------------
Confidence 99999999999999999999999999999984311 00
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALF 240 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~ 240 (369)
-.|+ ++.|..+.+|.+||++++|++.
T Consensus 117 ---~~~~---------------------------------------------------ii~r~Sv~epmqtg~KAvdslV 142 (340)
T KOG1353|consen 117 ---KERR---------------------------------------------------IIPRASVDEPMQTGLKAVDSLV 142 (340)
T ss_pred ---cccc---------------------------------------------------cccceeeechhhhhhhHhhcee
Confidence 0011 4567899999999999999999
Q ss_pred cccCCCeEeecCCCCCChHHHHH-HHHhhcCC---------CeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcc
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQ-ALSKYSNS---------DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK 310 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~-~ia~~~~~---------d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~ 310 (369)
||+||||.+|+|++.+|||.|+. .|.++... =.|||+.||++.+.+++++..+ ++.++|+
T Consensus 143 pigRgqrELiIgdRqTGkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l----------~~~~a~~ 212 (340)
T KOG1353|consen 143 PIGRGQRELIIGDRQTGKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRL----------EEADAME 212 (340)
T ss_pred eeccCceEEEeccccCCceeeeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHH----------HhcCCce
Confidence 99999999999999999999988 56666521 1499999999999999999875 7889999
Q ss_pred eeEEEEeCCCCCHHhHhhhhHHHHHH
Q 017581 311 RTTLVANTSNMPVAAREASIYTGITI 336 (369)
Q Consensus 311 ~t~vv~~t~~~~~~~r~~a~~~a~ti 336 (369)
++++|.+|++...-.....|.--++|
T Consensus 213 y~ivv~atasq~gdvsayiptnvisi 238 (340)
T KOG1353|consen 213 YSIVVAATASQAGDVSAYIPTNVISI 238 (340)
T ss_pred EEEEEEeecccccceeeecccceeee
Confidence 99999999997766666666655554
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.96 E-value=2.2e-29 Score=251.37 Aligned_cols=137 Identities=23% Similarity=0.277 Sum_probs=125.1
Q ss_pred CCCccccccccc--eeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCe-EEEEeecccchhhhHH
Q 017581 216 PRPVSSKLAADT--PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDT-VVYVGCGERGNEMAEV 289 (369)
Q Consensus 216 ~~~~~~r~~~~~--~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~-vV~~~iGer~~ev~~~ 289 (369)
|..+.+|..+++ ++.+|+|+||.|+|||+|||.+||||+|||||||+++|+++.. .|+ +++++||||++|+.++
T Consensus 138 p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdi 217 (416)
T PRK09376 138 PLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDM 217 (416)
T ss_pred CCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHH
Confidence 345899999988 7999999999999999999999999999999999999988663 466 5888999999999999
Q ss_pred hhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 290 LMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 290 ~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
.+.+ . .+||++|+|+||..|+++++.+++.||||+++|+||||++||+||||+||||++...|
T Consensus 218 qrsI----------l-------g~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG 280 (416)
T PRK09376 218 QRSV----------K-------GEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSG 280 (416)
T ss_pred HHHh----------c-------CcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccC
Confidence 8763 1 3899999999999999999999999999999999999999999999999999987765
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.93 E-value=1.6e-25 Score=213.14 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=110.6
Q ss_pred ceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC---CeE-EEEeecccchhhhHHhhhcccccccCCCCCcCCC
Q 017581 233 QRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS---DTV-VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESV 308 (369)
Q Consensus 233 i~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~---d~v-V~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~ 308 (369)
.|+||.|+||++|||++|||++|||||||+++|+++.+. +++ +++++++|+.++.+|.+..
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------------- 68 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------------- 68 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---------------
Confidence 599999999999999999999999999999999987654 554 6666999999999998651
Q ss_pred cceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 309 MKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 309 l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++++|++++++|+..|+.+++.+++.||||+++|++|++++|+++|||+||||+++..|
T Consensus 69 --~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G 127 (249)
T cd01128 69 --KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSG 127 (249)
T ss_pred --ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCC
Confidence 68899999999999999999999999999999999999999999999999999998876
No 61
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.91 E-value=8.7e-24 Score=212.04 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=113.1
Q ss_pred eeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcC---CC-eEEEEeecccchhhhHHhhhcccccccCCCC
Q 017581 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDG 303 (369)
Q Consensus 228 ~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d-~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~ 303 (369)
+-..|+|+||.++||++|||++|+|++|||||||+++|++... .+ .++++++|+|+.|+.+|.+..
T Consensus 151 ~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI---------- 220 (415)
T TIGR00767 151 TEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV---------- 220 (415)
T ss_pred ccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh----------
Confidence 3457899999999999999999999999999999999988643 34 468888999999999998752
Q ss_pred CcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 304 REESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 304 ~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
...||++++++|+..+..+++.+++.||||+++|+||+|++||++|||+||||++...|
T Consensus 221 -------lg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G 279 (415)
T TIGR00767 221 -------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASG 279 (415)
T ss_pred -------hceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcC
Confidence 24899999999999999999999999999999999999999999999999999998776
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=99.73 E-value=1.1e-17 Score=162.82 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=106.0
Q ss_pred ceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhc---CCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCC
Q 017581 233 QRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESV 308 (369)
Q Consensus 233 i~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~---~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~ 308 (369)
-|+||.+.|||+|||.+|++|+-+|||+||+.||+.. ++++ .++.+|.||..||.++-+.
T Consensus 161 ~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrs---------------- 224 (422)
T COG1158 161 TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRS---------------- 224 (422)
T ss_pred hHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHh----------------
Confidence 3899999999999999999999999999999998754 5676 6888999999999998643
Q ss_pred cceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHh
Q 017581 309 MKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREIS 365 (369)
Q Consensus 309 l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS 365 (369)
-+.-||++|-|+||-.+...+...+.-|..+.++|+||++++||+||.|+||+.+.
T Consensus 225 -V~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~ 280 (422)
T COG1158 225 -VKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVV 280 (422)
T ss_pred -hcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccC
Confidence 14889999999999999999999999999999999999999999999999998764
No 63
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.8e-15 Score=140.89 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=102.1
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHhhhccccccc
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVLMDFPQLTMT 299 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~~~f~~~~~~ 299 (369)
+.++..|.+ ..+++.+ +.+.+|++++|+|+||||||||++.||+...+ +.+.+.+ -+..++..+....|
T Consensus 7 ~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g-~~v~~p~~~~~~vF------ 78 (248)
T COG1116 7 EGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG-RPVTGPGPDIGYVF------ 78 (248)
T ss_pred EeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-cccCCCCCCEEEEe------
Confidence 345555655 8999999 99999999999999999999999999999877 4444443 22246666777776
Q ss_pred CCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhhcc
Q 017581 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISGRL 368 (369)
Q Consensus 300 ~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~~l 368 (369)
|++.++||.++..|..............+...+.++|..+| |+.|+++| +||||=|
T Consensus 79 ----Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~Vg---------L~~~~~~~P~qLSGGM 135 (248)
T COG1116 79 ----QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVG---------LAGFEDKYPHQLSGGM 135 (248)
T ss_pred ----ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcC---------CcchhhcCccccChHH
Confidence 99999999999999988776665666666668889999999 99999999 9999844
No 64
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.28 E-value=2.9e-12 Score=127.51 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=104.2
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec--ccchhhhHHhhhc
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG--ERGNEMAEVLMDF 293 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG--er~~ev~~~~~~f 293 (369)
.++.+.+++.|. +..++|.+ +.|.+|++++++|||||||||||++||+...+ +.|.+.+-- -..-+-|.+..+|
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 456667888888 88999999 99999999999999999999999999999877 445555431 1234455666666
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHh-hhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAARE-ASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~-~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|++.++|+.+|..|.+......+. ........+.|++.-.| |+.|+..+ .|+||
T Consensus 84 ----------Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~---------L~~~~~R~p~qLSG 139 (352)
T COG3842 84 ----------QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVG---------LEGFADRKPHQLSG 139 (352)
T ss_pred ----------cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcC---------chhhhhhChhhhCh
Confidence 999999999999999998774443 33557789999999999 99999999 99997
No 65
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.04 E-value=1.7e-10 Score=107.50 Aligned_cols=123 Identities=20% Similarity=0.332 Sum_probs=93.0
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe--ecccchhhh----HHhhhc
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG--CGERGNEMA----EVLMDF 293 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~--iGer~~ev~----~~~~~f 293 (369)
+.+++.|. +..+++.+ +++.+|+.+.|+||||+|||||++.|-+...+ +.+.+.+ ++.+. +.. ++..+|
T Consensus 6 ~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~vGmVF 83 (240)
T COG1126 6 KNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKVGMVF 83 (240)
T ss_pred EeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhcCeec
Confidence 35555454 56899999 99999999999999999999999999888765 4566554 22221 333 233455
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHH-HHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI-TIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~-tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|.+.++++.++.-|....|.--+-....-|. .+-++|...| |...|++| .+|||
T Consensus 84 ----------Q~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VG---------L~~ka~~yP~qLSG 139 (240)
T COG1126 84 ----------QQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVG---------LADKADAYPAQLSG 139 (240)
T ss_pred ----------ccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcC---------chhhhhhCccccCc
Confidence 8999999999999998888655544444444 4457777899 99999999 99997
No 66
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=2e-10 Score=105.88 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=91.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK 310 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~ 310 (369)
.++..+ ++|..|+.+.++||||||||||++.+|+...+ +.+-+.+. ....+..+-.-+| |+++++|
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r-~i~gPgaergvVF----------Q~~~LlP 87 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR-RIEGPGAERGVVF----------QNEALLP 87 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE-eccCCCccceeEe----------ccCccch
Confidence 345555 89999999999999999999999999999877 44544442 1134555666666 8999999
Q ss_pred eeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhhc
Q 017581 311 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISGR 367 (369)
Q Consensus 311 ~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~~ 367 (369)
|..++.|++....+..+..+.....+.+.+..+| |..+.+.| -|+||=
T Consensus 88 Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~Vg---------L~~~~~~~i~qLSGG 136 (259)
T COG4525 88 WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG---------LEGAEHKYIWQLSGG 136 (259)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC---------cccccccceEeecch
Confidence 9999999999999988889999999999999998 77777666 677663
No 67
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.91 E-value=5.6e-10 Score=110.75 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=95.5
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc--chhhhHHhhhccccc
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER--GNEMAEVLMDFPQLT 297 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer--~~ev~~~~~~f~~~~ 297 (369)
+.+.+.|.... +++.+ +.|..|+++.|+|||||||||||++||+..++ +.+.+.+---. .-+-|++..+|
T Consensus 7 ~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF---- 81 (338)
T COG3839 7 KNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF---- 81 (338)
T ss_pred eeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe----
Confidence 35555565544 88888 99999999999999999999999999999876 45655543211 12335666776
Q ss_pred ccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 298 MTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 298 ~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|.+.+.|+.+|..|-+...-..+.......-.++|-.+-.+ |+.+.+.+ ++|||
T Consensus 82 ------Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~---------l~~lL~r~P~~LSG 136 (338)
T COG3839 82 ------QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLG---------LEHLLNRKPLQLSG 136 (338)
T ss_pred ------CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcC---------ChhHHhcCcccCCh
Confidence 89999999999999999888777777777777777777777 77777666 66665
No 68
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.85 E-value=1.4e-08 Score=77.73 Aligned_cols=63 Identities=33% Similarity=0.471 Sum_probs=55.7
Q ss_pred EEEEECcEEEEeecCC--CccccEEEEc--C--CcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcC
Q 017581 24 VRKVSGPVVIADGMNG--AAMYELVRVG--H--DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTH 86 (369)
Q Consensus 24 V~~I~G~ii~v~gl~~--~~igE~v~i~--~--~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg 86 (369)
|++|.|+++++++.+. +.+++.+.++ + ....|+|+++++|.+.+|+|++++||++|++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 6789999999977666 6788888876 3 458999999999999999999999999999999986
No 69
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.84 E-value=3.1e-09 Score=101.44 Aligned_cols=127 Identities=15% Similarity=0.197 Sum_probs=99.1
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHhhhcccccccC
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~~~f~~~~~~~ 300 (369)
.+++.|. +-+++|.+ ++|..|.+++++|+|||||||+|+||-+...+ +.|.+.+---+.-+..++.... .--+
T Consensus 6 nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I---GYvi 81 (309)
T COG1125 6 NVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI---GYVI 81 (309)
T ss_pred eeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh---hhhh
Confidence 4444444 78999999 99999999999999999999999999998877 4455554333332233332211 0012
Q ss_pred CCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecch--HHHHHHH-HHHhh
Q 017581 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADST--SRWAEAL-REISG 366 (369)
Q Consensus 301 ~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsl--tr~A~A~-rEiS~ 366 (369)
|+-+++|+.+|.-|-+.=|.+..+........+-|.+.-+| | ..|++-| +|+||
T Consensus 82 ---QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvg---------L~p~~~~~RyP~eLSG 138 (309)
T COG1125 82 ---QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVG---------LDPSEYADRYPHELSG 138 (309)
T ss_pred ---hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhC---------CCHHHHhhcCchhcCc
Confidence 88899999999999999999999999999999999998889 6 3699999 99997
No 70
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=4.4e-09 Score=102.64 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=102.5
Q ss_pred cccceecc----Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe---ecccchhhhHHhhhc
Q 017581 224 AADTPLLT----GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG---CGERGNEMAEVLMDF 293 (369)
Q Consensus 224 ~~~~~l~T----Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~---iGer~~ev~~~~~~f 293 (369)
.+++.|.+ .+.|+|.. +.|.+|+..||+|.||.|||||+++|-....| +.+.+.+ ......+.+.+...
T Consensus 6 ~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~- 84 (339)
T COG1135 6 NVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQK- 84 (339)
T ss_pred eeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhh-
Confidence 44555554 48899988 99999999999999999999999999887766 4565555 23344555544332
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
..+- ||...+|...+|.-|.+.+.-...+........++|.+.-+| |+.++++| .||||
T Consensus 85 --IGMI---FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVg---------L~dk~~~yP~qLSG 144 (339)
T COG1135 85 --IGMI---FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVG---------LSDKADRYPAQLSG 144 (339)
T ss_pred --ccEE---eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcC---------ChhhhccCchhcCc
Confidence 1221 388999998999999999998999889999999999999999 99999999 99997
No 71
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=9.9e-09 Score=100.11 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=92.4
Q ss_pred cCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEee-----cccchhhhHHhhhcccccccCCC
Q 017581 231 TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVGC-----GERGNEMAEVLMDFPQLTMTLPD 302 (369)
Q Consensus 231 TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~i-----Ger~~ev~~~~~~f~~~~~~~~~ 302 (369)
....++|.+ +.|..|+.++++||||+||||||+.||+...+| .|++.+- -...---+.+...|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF--------- 83 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF--------- 83 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEE---------
Confidence 345677766 999999999999999999999999999998775 4555431 11233345666666
Q ss_pred CCcCCCcceeEEEEeCCCCCHHhH--hhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 303 GREESVMKRTTLVANTSNMPVAAR--EASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 303 ~~~~~~l~~t~vv~~t~~~~~~~r--~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|.+.++++.+|..|.+......+ ...+.....+.|.|+-+. |+.+|+.| .+|||
T Consensus 84 -Q~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvq---------L~~la~ryP~QLSG 140 (345)
T COG1118 84 -QHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ---------LEGLADRYPAQLSG 140 (345)
T ss_pred -echhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhc---------ccchhhcCchhcCh
Confidence 89999999999999999876653 334677788899999888 88999999 99987
No 72
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.63 E-value=1e-08 Score=96.57 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=61.8
Q ss_pred cccceeccC---ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEeec---ccchhhhHHhhhcc
Q 017581 224 AADTPLLTG---QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVGCG---ERGNEMAEVLMDFP 294 (369)
Q Consensus 224 ~~~~~l~TG---i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~iG---er~~ev~~~~~~f~ 294 (369)
.+.+.+..| +.+++.+ +.|.+|++++|.|||||||||||+.|.....++ .+.|.+.- ....+...|....
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~- 84 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKK- 84 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHh-
Confidence 444445444 6889888 999999999999999999999999999887774 45554421 1112222222210
Q ss_pred cccccCCCCCcCCCcceeEEEEeCCC
Q 017581 295 QLTMTLPDGREESVMKRTTLVANTSN 320 (369)
Q Consensus 295 ~~~~~~~~~~~~~~l~~t~vv~~t~~ 320 (369)
... =||.+.+++..++.-|..-
T Consensus 85 -iGf---vFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 85 -IGF---VFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred -EEE---ECccCCCCCCCCHHHHHHh
Confidence 000 0388899998888777654
No 73
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.9e-08 Score=99.50 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=74.5
Q ss_pred ccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc--chhhhHHhhhccccccc
Q 017581 225 ADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER--GNEMAEVLMDFPQLTMT 299 (369)
Q Consensus 225 ~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer--~~ev~~~~~~f~~~~~~ 299 (369)
++..|..+..+++.+ +.+.+|+.++|+|+||||||||+++|++...+ +.+.+.+.--. ...-+.+...|
T Consensus 9 l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~------ 82 (356)
T PRK11650 9 VRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF------ 82 (356)
T ss_pred EEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe------
Confidence 333342234678888 99999999999999999999999999998776 44555432110 01112233333
Q ss_pred CCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 300 ~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|.+.+.++.++..|........++........+.|.+...| |..+++.+ +++|+
T Consensus 83 ----Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~g---------L~~~~~~~~~~LSg 137 (356)
T PRK11650 83 ----QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE---------LEPLLDRKPRELSG 137 (356)
T ss_pred ----CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcC---------ChhHhhCChhhCCH
Confidence 55556666555544433211111222233345667777778 77777766 77775
No 74
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.54 E-value=5.3e-08 Score=89.50 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=102.8
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee---cccchhhhHHh----hh
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC---GERGNEMAEVL----MD 292 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i---Ger~~ev~~~~----~~ 292 (369)
..+++.+..|-.|++.+ +.|.+|+++-|.|+||.|||||+++|.+-..+ +.+.+.+. -.+.+++..+- .+
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV 84 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV 84 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeE
Confidence 46778889995599999 99999999999999999999999999876655 55666554 34456654443 34
Q ss_pred cccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 293 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 293 f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
| |++.+++.-+|..|.+...-...+........+.|.|.-+| |..-|+++ .||||
T Consensus 85 F----------QD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~Vg---------L~~k~~~lP~~LSG 140 (223)
T COG2884 85 F----------QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVG---------LKHKARALPSQLSG 140 (223)
T ss_pred e----------eeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhc---------cchhhhcCccccCc
Confidence 4 89999999999999999888888888888899999999999 88888888 88876
No 75
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=3.3e-08 Score=98.91 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=73.8
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc--chhhhHHhhhcccccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER--GNEMAEVLMDFPQLTM 298 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer--~~ev~~~~~~f~~~~~ 298 (369)
.++..+. +..+++.+ +.+.+|++++|+|+||||||||+++|++...+ +.+.+.+--.. ..+-+.+...|
T Consensus 11 ~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf----- 84 (351)
T PRK11432 11 NITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF----- 84 (351)
T ss_pred eEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe-----
Confidence 4444443 34678888 99999999999999999999999999998876 45555432111 11112333333
Q ss_pred cCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 299 TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 299 ~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|++.++++.++..|.+......+.........+.+.+...| |..+++.+ +++|+
T Consensus 85 -----Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~g---------l~~~~~r~~~~LSg 139 (351)
T PRK11432 85 -----QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD---------LAGFEDRYVDQISG 139 (351)
T ss_pred -----CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcC---------CchhhcCChhhCCH
Confidence 56666666555555443221111122233345556666667 55566555 66665
No 76
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.51 E-value=3.2e-08 Score=99.02 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=74.6
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc----hhhhHHhhhcccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG----NEMAEVLMDFPQL 296 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~----~ev~~~~~~f~~~ 296 (369)
.++..+. +..+++.+ +++.+|+.++|+|+||||||||+++|++...+ +.+.+.+ +.- ..-+.+...|
T Consensus 9 ~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g--~~~~~~~~~~r~ig~v~--- 82 (353)
T TIGR03265 9 NIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG--RDITRLPPQKRDYGIVF--- 82 (353)
T ss_pred EEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECC--EECCCCCHHHCCEEEEe---
Confidence 3444443 24578877 99999999999999999999999999998866 4455543 211 1122333333
Q ss_pred cccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 297 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 297 ~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|.+.++++.++..|.+......+.........+.|.+...| |..+++.+ +++|+
T Consensus 83 -------Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~---------L~~~~~~~~~~LSg 137 (353)
T TIGR03265 83 -------QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG---------LPGSERKYPGQLSG 137 (353)
T ss_pred -------CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC---------CCchhhCChhhCCH
Confidence 66667776666555543211111122333445667777777 65566655 66664
No 77
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.50 E-value=7.1e-08 Score=100.70 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=85.7
Q ss_pred Cccccccccceecc----------Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec--cc
Q 017581 218 PVSSKLAADTPLLT----------GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG--ER 282 (369)
Q Consensus 218 ~~~~r~~~~~~l~T----------Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG--er 282 (369)
|+++-+.+++.|.+ -++|+|.+ |.+.+|+.++|+|.||||||||+++|++...+ +.++|.+-- ..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 34445556665653 27999999 99999999999999999999999999999876 567776521 11
Q ss_pred c----hhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhh-hhHHHHHHHHHHHHCCCcEEEEecchHH-
Q 017581 283 G----NEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA-SIYTGITIAEYFRDMGYNVSMMADSTSR- 356 (369)
Q Consensus 283 ~----~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~-a~~~a~tiAEyfr~~G~~VLli~Dsltr- 356 (369)
. +.-+++-..| +++..++=++.+|-..-+......... .+.....++|.+...| |.+
T Consensus 359 ~~~~~~~r~~~QmvF--------Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg---------L~~~ 421 (539)
T COG1123 359 GGELRRLRRRIQMVF--------QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG---------LPPE 421 (539)
T ss_pred cchhhhhhhheEEEE--------eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcC---------CCHH
Confidence 1 1122333333 123344555555554444333222222 3444457999999999 444
Q ss_pred HHHHH-HHHhh
Q 017581 357 WAEAL-REISG 366 (369)
Q Consensus 357 ~A~A~-rEiS~ 366 (369)
|+.-| +|+||
T Consensus 422 ~l~ryP~elSG 432 (539)
T COG1123 422 FLDRYPHELSG 432 (539)
T ss_pred HHhcCchhcCc
Confidence 78888 88886
No 78
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.49 E-value=5.8e-08 Score=98.00 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=75.0
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc--hhhhHHhhhcc
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG--NEMAEVLMDFP 294 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~--~ev~~~~~~f~ 294 (369)
++-..++..+. +..+++.+ +++.+|+.++|+|+||||||||+++|++...+ +.+.|.+--... .+-+.+...|
T Consensus 15 L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf- 92 (375)
T PRK09452 15 VELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF- 92 (375)
T ss_pred EEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEe-
Confidence 33334444443 34578888 99999999999999999999999999998766 455554421110 1112233333
Q ss_pred cccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 295 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 295 ~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|++.+++...+..|.+......+.........+.+.+...| |+.+.+.+ +++|+
T Consensus 93 ---------Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~p~~LSg 147 (375)
T PRK09452 93 ---------QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ---------LEEFAQRKPHQLSG 147 (375)
T ss_pred ---------cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC---------CchhhhCChhhCCH
Confidence 56666666555555433211111112222335566666677 55555555 66664
No 79
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=5.5e-08 Score=98.23 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=78.7
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc----hhhhHHhhh
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG----NEMAEVLMD 292 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~----~ev~~~~~~ 292 (369)
++-..++..+. +..+++.+ +.+.+|+.++|+|+||||||||+++|++...+ +.+.+.+ +.- ..-+.+...
T Consensus 20 l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g--~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 20 LEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG--VDLSHVPPYQRPINMM 96 (377)
T ss_pred EEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC--EECCCCCHHHCCEEEE
Confidence 44445555553 34578877 99999999999999999999999999998866 4455543 221 112233334
Q ss_pred cccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 293 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 293 f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
| |++.++++.++..|.+......+.........+.|.+...| |..+++.+ +++|+
T Consensus 97 f----------Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~---------L~~~~~~~~~~LSg 152 (377)
T PRK11607 97 F----------QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVH---------MQEFAKRKPHQLSG 152 (377)
T ss_pred e----------CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC---------CchhhcCChhhCCH
Confidence 3 66777777666666543221112223344455667777777 55555555 56664
No 80
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.45 E-value=3e-07 Score=88.47 Aligned_cols=46 Identities=22% Similarity=0.523 Sum_probs=42.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
++|+|.+ |.|.+|+.++|+|.||||||||.++|++...+ +.|.|-+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 6999999 99999999999999999999999999999876 6677775
No 81
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.42 E-value=3.5e-07 Score=86.74 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=89.6
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEeecccc---h---hhhH-
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVGCGERG---N---EMAE- 288 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~iGer~---~---ev~~- 288 (369)
.++-+.+..-| .+-.++|.+ +.+.||+-.+|+||||+|||||++.|+++..++ .|.+-+-.-.. . +++.
T Consensus 8 ~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 44445555555 234777999 999999999999999999999999999998774 34332211111 1 2221
Q ss_pred HhhhcccccccCCCCCcCCCcceeEEEEeCCCCCH-HhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHH-HHHH-HHHh
Q 017581 289 VLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV-AAREASIYTGITIAEYFRDMGYNVSMMADSTSRW-AEAL-REIS 365 (369)
Q Consensus 289 ~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~-~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~-A~A~-rEiS 365 (369)
+... ||...+++-.+|+-|.+...- -.++.......-+.+.+..+| |.-- ++.| .|||
T Consensus 87 ~Gvl----------FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG---------L~~~~~~~~PsELS 147 (263)
T COG1127 87 MGVL----------FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG---------LRGAAADLYPSELS 147 (263)
T ss_pred eeEE----------eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC---------CChhhhhhCchhhc
Confidence 2222 488888899999999887543 234555566667778888899 7666 6667 9999
Q ss_pred hcc
Q 017581 366 GRL 368 (369)
Q Consensus 366 ~~l 368 (369)
|=|
T Consensus 148 GGM 150 (263)
T COG1127 148 GGM 150 (263)
T ss_pred chH
Confidence 854
No 82
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.40 E-value=9.4e-08 Score=95.39 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc---chhhh----HHhhhcccccccCCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER---GNEMA----EVLMDFPQLTMTLPD 302 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer---~~ev~----~~~~~f~~~~~~~~~ 302 (369)
..+++.+ +++.+|+.++|+|+||+|||||++.|++...+ +.+.+-+.--. ..+.+ .+...|
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~--------- 88 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIF--------- 88 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEE---------
Confidence 5689999 99999999999999999999999999998876 44555432110 11111 122222
Q ss_pred CCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 303 GREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 303 ~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|...+++..++..|.+......+.........+.|+++..| |..+++++ +++|+
T Consensus 89 -Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vg---------L~~~~~~~~~~LSg 143 (343)
T TIGR02314 89 -QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG---------LGDKHDSYPSNLSG 143 (343)
T ss_pred -CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC---------CchhhhCChhhCCH
Confidence 44455544444333322100011112223345678888888 77777777 78875
No 83
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3.9e-07 Score=86.24 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=73.4
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe---ecccchhhhHHhhhc
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG---CGERGNEMAEVLMDF 293 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~---iGer~~ev~~~~~~f 293 (369)
++-+.+++.|..|.++++.+ +.|.+|++++|+|+||.|||||++.|.+..++ +.+.+-+ ++.++++.++.....
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 34457777888999999999 99999999999999999999999999998776 5566665 566777776665431
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCC
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
.+ =+|.+.+.++..|+.|.-
T Consensus 84 ---Gm---IfQ~~nLv~r~sv~~NVl 103 (258)
T COG3638 84 ---GM---IFQQFNLVPRLSVLENVL 103 (258)
T ss_pred ---ee---EeccCCcccccHHHHHHH
Confidence 11 138888889888887763
No 84
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.34 E-value=1.4e-07 Score=94.73 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=70.5
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC----CeEEEEeeccc--chhhhHHhhhcccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS----DTVVYVGCGER--GNEMAEVLMDFPQL 296 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~----d~vV~~~iGer--~~ev~~~~~~f~~~ 296 (369)
.++..|. +..+++.+ ++|.+|+.++|+|++|||||||+++|++...+ +.+.+.+.-.. ...-+.+...|
T Consensus 10 ~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf--- 85 (362)
T TIGR03258 10 HLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF--- 85 (362)
T ss_pred EEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE---
Confidence 3344443 24688888 99999999999999999999999999998755 44444331100 11122333333
Q ss_pred cccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 297 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 297 ~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|++.++++.++..|.+......+.........+.|.+...| |..+++.+ +++|+
T Consensus 86 -------Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~g---------L~~~~~~~~~~LSg 140 (362)
T TIGR03258 86 -------QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVG---------LGDAAAHLPAQLSG 140 (362)
T ss_pred -------CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC---------CCchhhCChhhCCH
Confidence 55556666555444432111111111222334566666677 55555555 66664
No 85
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.34 E-value=2.6e-07 Score=92.55 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=68.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc--hhhhHHhhhcccccccCCCCCcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG--NEMAEVLMDFPQLTMTLPDGREES 307 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~--~ev~~~~~~f~~~~~~~~~~~~~~ 307 (369)
..+++.+ +++.+|+.++|+|++|||||||+++|++...+ +.+.|.+.-... ..-+.+...| |++.
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~----------Q~~~ 84 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF----------QHYA 84 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe----------cCcc
Confidence 4588888 99999999999999999999999999998765 445554321111 1112233332 5555
Q ss_pred CcceeEEEEeCCCCCHHh----HhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 308 VMKRTTLVANTSNMPVAA----REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 308 ~l~~t~vv~~t~~~~~~~----r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
+.++..+..|........ +.........+.|.+...| |..+.+.+ +++|+
T Consensus 85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------L~~~~~~~~~~LSg 139 (353)
T PRK10851 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ---------LAHLADRYPAQLSG 139 (353)
T ss_pred cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcC---------CchhhhCChhhCCH
Confidence 566555544443221110 1111223345566777777 55555555 66664
No 86
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=6.4e-06 Score=70.56 Aligned_cols=97 Identities=28% Similarity=0.337 Sum_probs=65.7
Q ss_pred EeecCCCCCChHHHHHHHHhhcC--CCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHh
Q 017581 248 CAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~ 325 (369)
++|+|++|+|||+|+..++++.. ...++|....+...+..+....+ ......++..++..........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 71 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGE----------SLKGALDNLIIVFATADDPAAA 71 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhh----------hhccccccEEEEEcCCCCCcHH
Confidence 67999999999999999987763 24577777676666655443332 2223445556666555544443
Q ss_pred HhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHH
Q 017581 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 360 (369)
Q Consensus 326 r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A 360 (369)
... .++.++.......++|+|+++.++++
T Consensus 72 ~~~------~~~~~~~~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 72 RLL------SKAERLRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHH------HHHHHHHhCCCCEEEEEEcHHHHHHH
Confidence 322 56777777778889999999988654
No 87
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.30 E-value=2.2e-07 Score=93.51 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=70.2
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc---hhh-----hHHhhhcccccccC
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG---NEM-----AEVLMDFPQLTMTL 300 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~---~ev-----~~~~~~f~~~~~~~ 300 (369)
+..+++.+ +.+.+|+.++|+|+||||||||+++|++...+ +.+.+-+---.. .+. +.+...|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~------- 77 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF------- 77 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE-------
Confidence 34678888 99999999999999999999999999998876 445554321111 111 1222222
Q ss_pred CCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 301 ~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|+..++++.++..|....+....+........+.|.+...| |..|++.+ +++|+
T Consensus 78 ---Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vg---------L~~~~~~~p~~LSG 132 (363)
T TIGR01186 78 ---QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG---------LEEYEHRYPDELSG 132 (363)
T ss_pred ---CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC---------CchhhhCChhhCCH
Confidence 55666666555444332211111111223345667777778 66666666 67765
No 88
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=7.1e-07 Score=87.68 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=95.6
Q ss_pred ccC-ceee-eccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee---cccchhhhHHhhhcccccccCCC
Q 017581 230 LTG-QRVL-DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC---GERGNEMAEVLMDFPQLTMTLPD 302 (369)
Q Consensus 230 ~TG-i~aI-D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i---Ger~~ev~~~~~~f~~~~~~~~~ 302 (369)
.|| +-.+ |.-+.+..|+-..|.|=||+|||||++.+-+...+ +.+.+-+- .-...+.++|... +.-+ -
T Consensus 37 ~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~----~~sM-V 111 (386)
T COG4175 37 KTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRK----KISM-V 111 (386)
T ss_pred hhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhh----hhhh-h
Confidence 566 2233 55599999999999999999999999999888766 44444331 1222344443321 0000 1
Q ss_pred CCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhhcc
Q 017581 303 GREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISGRL 368 (369)
Q Consensus 303 ~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~~l 368 (369)
||..++|||-+|..|+....-+........-..+.|.+..+| |..|++.| +||||=|
T Consensus 112 FQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~Vg---------L~~~~~~yp~eLSGGM 169 (386)
T COG4175 112 FQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG---------LEGYADKYPNELSGGM 169 (386)
T ss_pred hhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcC---------chhhhhcCcccccchH
Confidence 389999999999999999998988999999999999999999 99999999 9999854
No 89
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.20 E-value=7.8e-07 Score=82.72 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=38.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|.
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~ 70 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLV 70 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEEC
Confidence 478888 99999999999999999999999999998765 445544
No 90
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.3e-06 Score=83.01 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=45.2
Q ss_pred cccceeccCc---eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 224 AADTPLLTGQ---RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 224 ~~~~~l~TGi---~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.++..|..+- ++++.+ +.|.+|+..+|+|+||||||||++.|++..++ |.|.|.+
T Consensus 8 nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred ceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 4444455553 689999 99999999999999999999999999998876 5566665
No 91
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.19 E-value=5.9e-07 Score=82.52 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN 61 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 4578888 99999999999999999999999999998765 445543
No 92
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.18 E-value=5.7e-07 Score=90.51 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|||||||+++|++...+ +.+.|.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~ 63 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 4578888 99999999999999999999999999998765 445443
No 93
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.18 E-value=4e-06 Score=80.63 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=41.6
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
+-.+++.+ +++.+|+.++|+||.|||||||++.|++...+ +.|.+.+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~ 64 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCC
Confidence 56788888 99999999999999999999999999997765 56666654
No 94
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.16 E-value=2.5e-06 Score=78.35 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=61.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc-----chhhhHHhhhcccccccCCCCCcCCCccee
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER-----GNEMAEVLMDFPQLTMTLPDGREESVMKRT 312 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer-----~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t 312 (369)
+++..||++.|+|+||.|||||++.||++.-+ +.+.+.+..-. .|++..+ ||+..++.+.
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml-------------FQEnNLFaHL 86 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML-------------FQENNLFAHL 86 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh-------------hhccccchhh
Confidence 78899999999999999999999999999876 55655543221 2344433 2788899999
Q ss_pred EEEEeCCCCC-HHhHhhhhHHHHHHHHHHHHCC
Q 017581 313 TLVANTSNMP-VAAREASIYTGITIAEYFRDMG 344 (369)
Q Consensus 313 ~vv~~t~~~~-~~~r~~a~~~a~tiAEyfr~~G 344 (369)
+|-.|..... |..+..+ .-...+...++.+|
T Consensus 87 tV~qNigLGl~P~LkL~a-~~r~~v~~aa~~vG 118 (231)
T COG3840 87 TVAQNIGLGLSPGLKLNA-EQREKVEAAAAQVG 118 (231)
T ss_pred hhhhhhcccCCcccccCH-HHHHHHHHHHHHhC
Confidence 9988887643 3333322 22333444444555
No 95
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.15 E-value=1.1e-06 Score=87.41 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=39.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.++++.+ +.|.+|+.++|+|++|||||||+++|++...+ +.+.|-
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 6789999 99999999999999999999999999998755 555554
No 96
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.15 E-value=1.1e-06 Score=81.10 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 63 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN 63 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 478888 99999999999999999999999999998765 555544
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=9.1e-07 Score=82.74 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 69 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 4578888 99999999999999999999999999998765 445444
No 98
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.10 E-value=1.6e-06 Score=80.22 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=38.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 65 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN 65 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 3578888 99999999999999999999999999998765 455443
No 99
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=1.4e-06 Score=86.77 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=39.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|.+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g 66 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG 66 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Confidence 5688888 99999999999999999999999999998765 4555543
No 100
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.08 E-value=1.1e-06 Score=88.90 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=69.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec------c-cchhhh-----HHhhhccccc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG------E-RGNEMA-----EVLMDFPQLT 297 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG------e-r~~ev~-----~~~~~f~~~~ 297 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|-+-. . ...+.+ .+...|
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf---- 112 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF---- 112 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE----
Confidence 5677777 99999999999999999999999999998765 556554311 0 011111 122222
Q ss_pred ccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 298 MTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 298 ~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|...++++.++..|.+......++........+.|+++..| |..+.+.+ .++|+
T Consensus 113 ------Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vg---------L~~~~~~~~~~LSg 167 (382)
T TIGR03415 113 ------QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVG---------LAQWADKKPGELSG 167 (382)
T ss_pred ------CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC---------CchhhcCChhhCCH
Confidence 55566665555444432111111112223345567777788 66666665 66665
No 101
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.08 E-value=1.6e-05 Score=73.48 Aligned_cols=50 Identities=32% Similarity=0.407 Sum_probs=40.6
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEe
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVG 278 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~ 278 (369)
+.||+..+|.++. +.+|.-+.|.|++|+|||+|+.+++.+. .. .-++|.-
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4799999999985 8899999999999999999999887653 22 3455543
No 102
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=1e-06 Score=89.73 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=38.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+|+.++|+|++|||||||+++|++...+ +.+.|-+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G 89 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDG 89 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECC
Confidence 478888 99999999999999999999999999998765 5555543
No 103
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.08 E-value=1.5e-05 Score=74.07 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=68.5
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc-CC-------CeEEEEeeccc--chhhhHHhhhcccc
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-------DTVVYVGCGER--GNEMAEVLMDFPQL 296 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-------d~vV~~~iGer--~~ev~~~~~~f~~~ 296 (369)
+.||++.+|.++. +.+|+.+.|.|++|+|||+|+.+++.+. .+ ..++|....+. .....++.+.+
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~--- 77 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERF--- 77 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHh---
Confidence 4799999999976 8899999999999999999999887432 11 34666553331 22333333322
Q ss_pred cccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 297 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 297 ~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
. . .....+++..++.... ........ ..+-+.+.+.+.--|+++||++.+.
T Consensus 78 ~--~---~~~~~~~~i~~~~~~~----~~~l~~~l--~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 78 G--L---DPEEVLDNIYVARAYN----SDHQLQLL--EELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred c--c---ChHhHhcCEEEEecCC----HHHHHHHH--HHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 1 0 1234556655544322 11111111 1233444444355689999999763
No 104
>PRK10908 cell division protein FtsE; Provisional
Probab=98.07 E-value=2.4e-06 Score=79.22 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=38.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS 62 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3577888 99999999999999999999999999998765 555554
No 105
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.8e-06 Score=84.79 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=41.8
Q ss_pred ccccceeccC---ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 223 LAADTPLLTG---QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 223 ~~~~~~l~TG---i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+..+.-|.|. ++++|.+ +.+.+|+.++|+|.|||||||++..|.+..+
T Consensus 5 ~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 5 KNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred eeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3455556663 8999999 9999999999999999999999999999876
No 106
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.05 E-value=2.1e-06 Score=79.18 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 64 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEEC
Confidence 3578888 99999999999999999999999999998765 455543
No 107
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=2e-06 Score=79.02 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=37.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 467777 99999999999999999999999999998655 445443
No 108
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.02 E-value=3.8e-06 Score=77.50 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|.|++|+|||||++.|++...+ +.+.|-
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEEC
Confidence 467777 99999999999999999999999999998755 445443
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=3.1e-06 Score=80.69 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.|.
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 61 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 467777 99999999999999999999999999998755 555553
No 110
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.01 E-value=3.6e-06 Score=77.75 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=38.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 62 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYIN 62 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 4578888 99999999999999999999999999998755 445443
No 111
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=2.8e-06 Score=79.28 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 467888 99999999999999999999999999998765 455544
No 112
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.01 E-value=2.9e-05 Score=71.75 Aligned_cols=40 Identities=35% Similarity=0.489 Sum_probs=36.4
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.||+..+|.++. +.+|+...|.|++|+|||+|+.+++.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4799999999974 899999999999999999999988755
No 113
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.00 E-value=7.5e-06 Score=74.41 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=42.0
Q ss_pred eccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe--EEEE
Q 017581 229 LLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT--VVYV 277 (369)
Q Consensus 229 l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~--vV~~ 277 (369)
..++-+.+|.. +.+.+|+++.|.||||||||||+++++....++. +.|-
T Consensus 12 ~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~ 63 (223)
T COG4619 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFE 63 (223)
T ss_pred hcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEc
Confidence 35667888888 9999999999999999999999999999987753 4443
No 114
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=2.8e-06 Score=81.59 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=42.4
Q ss_pred ccccceecc-Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 223 LAADTPLLT-GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 223 ~~~~~~l~T-Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..++..+.. +..+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 11 ~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 69 (271)
T PRK13632 11 ENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKID 69 (271)
T ss_pred EeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 344444432 34578888 99999999999999999999999999998765 445443
No 115
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.99 E-value=3.4e-06 Score=78.54 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=37.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
-.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3578888 99999999999999999999999999998755 44544
No 116
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.99 E-value=2.9e-06 Score=77.29 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=70.1
Q ss_pred cccccccceeccC---ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc--chhh-----
Q 017581 220 SSKLAADTPLLTG---QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER--GNEM----- 286 (369)
Q Consensus 220 ~~r~~~~~~l~TG---i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer--~~ev----- 286 (369)
++-+..+..+.++ +..+-.+ +.+.+|+.++|+|+||.|||||+..+|+...+ +.|.+.+--.. ..+.
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R 86 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR 86 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhh
Confidence 3444555555444 4555555 88999999999999999999999999998876 44555442111 1111
Q ss_pred -hHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCC
Q 017581 287 -AEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG 344 (369)
Q Consensus 287 -~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G 344 (369)
+.+..+| |..-++++.+-.-|.+-+.-+....++..-.++.+.|...|
T Consensus 87 ~~~vGfVF----------QSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vG 135 (228)
T COG4181 87 ARHVGFVF----------QSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG 135 (228)
T ss_pred ccceeEEE----------EeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhC
Confidence 1222333 45555666655555554444444345555555666666676
No 117
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.99 E-value=2.5e-05 Score=76.37 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=75.3
Q ss_pred eeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcC--------CCeEEEEeecc--cchhhhHHhhhccc
Q 017581 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMDFPQ 295 (369)
Q Consensus 228 ~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~--------~d~vV~~~iGe--r~~ev~~~~~~f~~ 295 (369)
.+.||+..+|.++. +.+|.-+.|+|++|+|||+|+.+++-+.. .+.++|.-..+ +.....++.+.|
T Consensus 76 ~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~-- 153 (310)
T TIGR02236 76 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEAR-- 153 (310)
T ss_pred eecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHc--
Confidence 37899999999977 88999999999999999999998875431 24678887655 334455555443
Q ss_pred ccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcE-EEEecchHHHHHH
Q 017581 296 LTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNV-SMMADSTSRWAEA 360 (369)
Q Consensus 296 ~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~V-Lli~Dsltr~A~A 360 (369)
. + .....+++..++.....++ ++ ..-..+.+++.+.+..+ ++|+||++.+-+.
T Consensus 154 -g--l---~~~~~~~~i~i~~~~~~~~---~~---~lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 154 -G--L---DPDEVLKNIYVARAYNSNH---QM---LLVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred -C--C---CHHHHhhceEEEecCCHHH---HH---HHHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 1 1 1122345544443322111 11 12234567776644334 8999999976444
No 118
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=3.3e-06 Score=78.98 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=38.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+-+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 61 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 3578888 99999999999999999999999999998765 4555433
No 119
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=3.1e-06 Score=77.88 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=37.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 467777 99999999999999999999999999998755 44544
No 120
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=4.1e-06 Score=80.85 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=38.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.|.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIID 67 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 478888 99999999999999999999999999998765 555554
No 121
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.97 E-value=4e-06 Score=81.85 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 53 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA 53 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3578888 99999999999999999999999999998765 445443
No 122
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.97 E-value=3.2e-06 Score=77.69 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=37.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.|
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 467777 99999999999999999999999999998755 44544
No 123
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.96 E-value=3.6e-06 Score=82.57 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.0
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.++.+.++..|. +..++|.+ ++|.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 7 ~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~ 67 (306)
T PRK13537 7 PIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67 (306)
T ss_pred eEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 344456666564 35789999 99999999999999999999999999998766 445443
No 124
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=4e-06 Score=80.75 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 65 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVM 65 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 4578888 99999999999999999999999999998765 455444
No 125
>PTZ00035 Rad51 protein; Provisional
Probab=97.96 E-value=2.2e-05 Score=78.34 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=73.5
Q ss_pred ccccccccceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcC--------CCeEEEEeeccc---chh
Q 017581 219 VSSKLAADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGER---GNE 285 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~--------~d~vV~~~iGer---~~e 285 (369)
+++++.-...+.||++.+|.++- +.+|.-..|+|++|+|||+|+.+++.... .+.++|.- +|. ...
T Consensus 90 ~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId-tE~~f~~er 168 (337)
T PTZ00035 90 YLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID-TEGTFRPER 168 (337)
T ss_pred HHHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE-ccCCCCHHH
Confidence 34444445669999999999975 88999999999999999999998864322 34566666 343 233
Q ss_pred hhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 286 MAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 286 v~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
+.++.+.| . + ....++++-.+.- ...+ .+..... ..+.+.+.+ +.--|+|+||++.+.+
T Consensus 169 i~~ia~~~---g--~---~~~~~l~nI~~~~--~~~~-e~~~~~l---~~~~~~l~~-~~~~lvVIDSital~r 227 (337)
T PTZ00035 169 IVQIAERF---G--L---DPEDVLDNIAYAR--AYNH-EHQMQLL---SQAAAKMAE-ERFALLIVDSATALFR 227 (337)
T ss_pred HHHHHHHh---C--C---ChHhHhhceEEEc--cCCH-HHHHHHH---HHHHHHhhc-cCccEEEEECcHHhhh
Confidence 44444433 1 1 1224556533322 2211 1111111 123334433 4445899999997543
No 126
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.95 E-value=2.4e-06 Score=78.01 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.|.
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 58 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 467777 99999999999999999999999999998765 455544
No 127
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.95 E-value=4.5e-05 Score=71.91 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=51.2
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHh-hcCC-CeEEEEeecccchhhhHHhhhc
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK-YSNS-DTVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~-d~vV~~~iGer~~ev~~~~~~f 293 (369)
+.|||..+|.++. +.+|.-+.|.|++|+|||+|+.+++. .... ..++|....+...++.+..+.|
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHh
Confidence 7899999999864 88999999999999999999998654 3344 3578888777666666655443
No 128
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=5.3e-06 Score=77.85 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=38.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|.+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG 63 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 477788 99999999999999999999999999998755 5555543
No 129
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.95 E-value=4.8e-06 Score=78.03 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 61 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 467777 99999999999999999999999999998755 445443
No 130
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.94 E-value=7e-06 Score=76.32 Aligned_cols=120 Identities=22% Similarity=0.199 Sum_probs=74.8
Q ss_pred eccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHH-hhcCC-C-eEEEEeecccchhhhHHhhhcccccccCCCC
Q 017581 229 LLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALS-KYSNS-D-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDG 303 (369)
Q Consensus 229 l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia-~~~~~-d-~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~ 303 (369)
..|||..+|.++ -+.+|.-++|.|++|+|||+|+.+++ +++.. + -|+|...-+...++.+-.+.| ..++
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~---g~d~--- 74 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSF---GWDL--- 74 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTT---TS-H---
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHc---CCcH---
Confidence 369999999998 88999999999999999999999865 44443 3 478888777776666666554 1111
Q ss_pred CcCCCcc--eeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHH
Q 017581 304 REESVMK--RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 357 (369)
Q Consensus 304 ~~~~~l~--~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~ 357 (369)
....+ +..++....................+.+.+.+.+. -.+++|||+-+
T Consensus 75 --~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l 127 (226)
T PF06745_consen 75 --EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL 127 (226)
T ss_dssp --HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH
T ss_pred --HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH
Confidence 11112 23444333221100022334445666777776665 57889999988
No 131
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.94 E-value=4.1e-05 Score=71.19 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=46.0
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHh-hcCCC-eEEEEeecccchhhhHH
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK-YSNSD-TVVYVGCGERGNEMAEV 289 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~d-~vV~~~iGer~~ev~~~ 289 (369)
+.|||..+|.++. +.+|..+.|.|++|+|||+|+.+++. ....+ -++|....+...++.+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH
Confidence 5799999999874 88999999999999999999998764 23333 46666655554444433
No 132
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.94 E-value=5.2e-05 Score=71.03 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=49.9
Q ss_pred ceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHh-hcCC-CeEEEEeecccchhhhHHhhh
Q 017581 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK-YSNS-DTVVYVGCGERGNEMAEVLMD 292 (369)
Q Consensus 227 ~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~-d~vV~~~iGer~~ev~~~~~~ 292 (369)
+.+.|||..+|.++ -+.+|.-+.|.|++|+|||+|+.+++. .... ..++|...-+...+..+-.+.
T Consensus 5 ~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 5 EIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred eEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHH
Confidence 35899999999997 488999999999999999999998753 3333 457777766555544443333
No 133
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.93 E-value=4.3e-06 Score=78.03 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 60 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEEC
Confidence 477888 99999999999999999999999999998655 445443
No 134
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=3.1e-06 Score=78.37 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=37.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.|.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 578888 99999999999999999999999999998655 44444
No 135
>PRK04328 hypothetical protein; Provisional
Probab=97.92 E-value=5.4e-05 Score=72.15 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=53.0
Q ss_pred eeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhh-cCC-CeEEEEeecccchhhhHHhhhc
Q 017581 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-SNS-DTVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 228 ~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~-~~~-d~vV~~~iGer~~ev~~~~~~f 293 (369)
.+.|||..+|.++. +.+|.-+.|.|++|+|||+|+.+++.. ... .-++|....+...++.+..+.|
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHc
Confidence 38999999999975 779999999999999999999986543 344 3488888888777776665554
No 136
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.89 E-value=3.3e-05 Score=76.63 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=68.4
Q ss_pred eeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEeecccchhhhHHhhhcccccccCCC
Q 017581 228 PLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCGERGNEMAEVLMDFPQLTMTLPD 302 (369)
Q Consensus 228 ~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~ 302 (369)
.+.||+..+|.++. +.+|.-+.|+|++|+|||||+.+++.+. .. ..++|.-.-+...+ +..+.+
T Consensus 35 ~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~--~~a~~l--------- 103 (321)
T TIGR02012 35 TISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYARKL--------- 103 (321)
T ss_pred eecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH--HHHHHc---------
Confidence 48999999999998 8899999999999999999998755432 23 44666653322222 233332
Q ss_pred CCcCCC-cceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 303 GREESV-MKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 303 ~~~~~~-l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
+. +++..+ + ..+ ..++ ++.+++.+...+.--++++||++.+.
T Consensus 104 ----Gvd~~~l~v-~-~p~--~~eq------~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 104 ----GVDIDNLLV-S-QPD--TGEQ------ALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred ----CCCHHHeEE-e-cCC--CHHH------HHHHHHHHhhccCCcEEEEcchhhhc
Confidence 11 233332 2 222 1232 34556666666666789999998664
No 137
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=1.3e-05 Score=75.12 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=38.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
-.+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 3577777 99999999999999999999999999998755 555544
No 138
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=7.1e-06 Score=75.96 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 60 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 467777 99999999999999999999999999998665 445443
No 139
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=6.5e-06 Score=77.40 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFID 61 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 477888 99999999999999999999999999998765 445443
No 140
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.86 E-value=5.1e-05 Score=76.01 Aligned_cols=121 Identities=16% Similarity=0.224 Sum_probs=74.3
Q ss_pred cccceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc--C------CCeEEEEeecc--cchhhhHHhh
Q 017581 224 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGE--RGNEMAEVLM 291 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~------~d~vV~~~iGe--r~~ev~~~~~ 291 (369)
.-...+.||++.+|.++- |.+|.-.-|+|++|||||+|+.+++-+. . .+.++|.-..+ +...+.+..+
T Consensus 103 ~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~ 182 (344)
T PLN03187 103 KSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE 182 (344)
T ss_pred ccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 345569999999999977 7899999999999999999999876322 1 24577777654 4555556655
Q ss_pred hcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 292 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 292 ~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
.| . + .....+++..+.. ... ..+... .-..+.+.+.+.+. =|+|+||++-+-+
T Consensus 183 ~~---g--~---d~~~~l~~I~~~~--~~~-~e~~~~---~l~~l~~~i~~~~~-~LvVIDSital~r 235 (344)
T PLN03187 183 RF---G--M---DADAVLDNIIYAR--AYT-YEHQYN---LLLGLAAKMAEEPF-RLLIVDSVIALFR 235 (344)
T ss_pred Hc---C--C---ChhhhcCeEEEec--CCC-HHHHHH---HHHHHHHHHHhcCC-CEEEEeCcHHhhh
Confidence 54 1 1 2234566633322 222 112111 11233344544343 3679999986643
No 141
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=7.3e-06 Score=75.31 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=36.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+| +++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 59 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 577777 999999 9999999999999999999998655 555443
No 142
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2e-05 Score=78.16 Aligned_cols=46 Identities=30% Similarity=0.572 Sum_probs=40.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
+++++.+ +.|.+|+.++|+|+||||||||++.|++...+ +.+.|.+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g 76 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG 76 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 6789999 99999999999999999999999999998654 5565543
No 143
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.84 E-value=2.4e-05 Score=63.94 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=28.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
+++.+.|+|++|+||||++..++++.... .+++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999999887664 244444
No 144
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.84 E-value=6e-05 Score=71.85 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=83.7
Q ss_pred eeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHh-hcCCCe-EEEEeecccchhhhHHhhhcccccccCCCC
Q 017581 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK-YSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDG 303 (369)
Q Consensus 228 ~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~ 303 (369)
.+.|||.-+|-++. +.+|..++|.|++|+|||+++.+.+. .++.|. |+|+..-|...++.+-...| ...+
T Consensus 4 ~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~---g~d~--- 77 (260)
T COG0467 4 RIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSF---GWDL--- 77 (260)
T ss_pred cccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHc---CCCH---
Confidence 47899999999988 89999999999999999999998654 444554 89999999888888888765 1111
Q ss_pred CcCCCcceeEEEEeCCCCCHHh------HhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 304 REESVMKRTTLVANTSNMPVAA------REASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 304 ~~~~~l~~t~vv~~t~~~~~~~------r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
+...---+..++...+...... -.......-.+-+...+.+ ..-+++||++.+.
T Consensus 78 ~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~ 137 (260)
T COG0467 78 EVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELT 137 (260)
T ss_pred HHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHh
Confidence 1111111122333222222211 1234456677777777777 5667889999543
No 145
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.84 E-value=2.2e-05 Score=72.68 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 217 RPVSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 217 ~~~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
++.++-..++..+.. -.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 9 ~~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 71 (214)
T PRK13543 9 PPLLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71 (214)
T ss_pred cceEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 344555555554432 3578888 99999999999999999999999999997655 445443
No 146
>PRK09354 recA recombinase A; Provisional
Probab=97.84 E-value=4.8e-05 Score=76.25 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=71.7
Q ss_pred cceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc-C-CCeEEEEeecccchhhhHHhhhcccccccC
Q 017581 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS-N-SDTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~-~d~vV~~~iGer~~ev~~~~~~f~~~~~~~ 300 (369)
.+.+.||+..+|.++. +.+|.-+-|+|++|+|||||+.+++.+. . ...++|.-.-+ .-+. +..+.|
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~-s~~~-~~a~~l------- 108 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH-ALDP-VYAKKL------- 108 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc-chHH-HHHHHc-------
Confidence 3458999999999998 7789999999999999999999765432 2 34577777433 3222 344332
Q ss_pred CCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 301 ~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
+-. +++..+ ...+ ..++ ++.+++.+...+.--|+++||++.+.
T Consensus 109 ----Gvd-ld~lli--~qp~--~~Eq------~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 109 ----GVD-IDNLLV--SQPD--TGEQ------ALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred ----CCC-HHHeEE--ecCC--CHHH------HHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 111 333322 2222 1332 35666677666777789999999664
No 147
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.83 E-value=6e-05 Score=74.53 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=72.5
Q ss_pred cccceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHh--hc------CCCeEEEEeecc--cchhhhHHhh
Q 017581 224 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK--YS------NSDTVVYVGCGE--RGNEMAEVLM 291 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~--~~------~~d~vV~~~iGe--r~~ev~~~~~ 291 (369)
.-...+.||++.+|.++- +.+|.-.-|+|++|+|||+|+.+++- +. ..+.++|.-.-+ +...+.++.+
T Consensus 73 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~ 152 (313)
T TIGR02238 73 KKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE 152 (313)
T ss_pred ccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 334569999999999976 88999999999999999999998763 21 124577777544 2344555554
Q ss_pred hcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 292 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 292 ~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
.| . . .....+++-. +.. ... .+.... .-..+.+.+.+.+. =|+|+||++.+-.
T Consensus 153 ~~---g--~---d~~~~l~~i~-~~~-~~~--~e~~~~--~l~~l~~~i~~~~~-~LvVIDSisal~r 205 (313)
T TIGR02238 153 RF---G--V---DPDAVLDNIL-YAR-AYT--SEHQME--LLDYLAAKFSEEPF-RLLIVDSIMALFR 205 (313)
T ss_pred Hc---C--C---ChHHhcCcEE-Eec-CCC--HHHHHH--HHHHHHHHhhccCC-CEEEEEcchHhhh
Confidence 43 1 1 1223455533 221 111 111111 11234445544443 3689999986543
No 148
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.82 E-value=2.2e-05 Score=71.03 Aligned_cols=45 Identities=29% Similarity=0.382 Sum_probs=38.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 52 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLID 52 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEC
Confidence 4578888 99999999999999999999999999998765 445443
No 149
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.82 E-value=1.4e-05 Score=74.20 Aligned_cols=44 Identities=9% Similarity=0.290 Sum_probs=36.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 467777 99999999999999999999999999997655 445443
No 150
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.81 E-value=2.4e-05 Score=73.39 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=38.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
-.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+-+
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECC
Confidence 3578888 99999999999999999999999999998755 5555543
No 151
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.81 E-value=8.7e-06 Score=79.54 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=38.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|++++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 64 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 4578888 99999999999999999999999999998765 455544
No 152
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=9.7e-06 Score=79.60 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=38.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.|.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEe
Confidence 3578888 99999999999999999999999999998765 455553
No 153
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.80 E-value=2e-05 Score=78.22 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=48.6
Q ss_pred Cccccccccceecc--C-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-----CeEEEEe
Q 017581 218 PVSSKLAADTPLLT--G-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-----DTVVYVG 278 (369)
Q Consensus 218 ~~~~r~~~~~~l~T--G-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-----d~vV~~~ 278 (369)
+.++...++..|.+ | .++++.+ +.|.+|+.++|+|+||||||||+++|++...+ +.|.|-+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G 80 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNG 80 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECC
Confidence 35566677776754 3 6799999 99999999999999999999999999987643 4555543
No 154
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=2.2e-05 Score=72.97 Aligned_cols=43 Identities=30% Similarity=0.497 Sum_probs=37.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +++.+||+++|+|++|+|||||+++|++...+ +.+.+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 478888 99999999999999999999999999998765 54544
No 155
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.80 E-value=1.4e-05 Score=74.88 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=37.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|++++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 478888 99999999999999999999999999998765 455544
No 156
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.79 E-value=3.4e-05 Score=76.68 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=70.1
Q ss_pred eeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc-C-CCeEEEEeecccchhhhHHhhhcccccccCCC
Q 017581 228 PLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS-N-SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPD 302 (369)
Q Consensus 228 ~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~-~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~ 302 (369)
.+.||+..+|.++. +.+|--+-|+|++|+|||||+.+++.+. . ...++|.-. |..-+ .+....+
T Consensus 35 ~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~-E~~~~-~~~a~~l--------- 103 (325)
T cd00983 35 VIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA-EHALD-PVYAKKL--------- 103 (325)
T ss_pred eecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc-cccHH-HHHHHHc---------
Confidence 59999999999998 8899999999999999999999866432 2 245777764 32322 2333332
Q ss_pred CCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 303 GREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 303 ~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
+-. +++.. +. ..+. .+ -++.+++.+...+.--|+|+||++.+.
T Consensus 104 --Gvd-~~~l~-v~-~p~~--~e------q~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 104 --GVD-LDNLL-IS-QPDT--GE------QALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --CCC-HHHhe-ec-CCCC--HH------HHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 101 23322 22 2221 22 245566777766777789999998665
No 157
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=2.8e-05 Score=72.72 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
-.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 61 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEEC
Confidence 4578888 99999999999999999999999999998654 555554
No 158
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=2.9e-05 Score=77.02 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=39.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC------CCeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN------SDTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~------~d~vV~~~ 278 (369)
..+++.+ +.|.+|+.++|+|+||||||||+++|++... .+.+.|-+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g 72 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD 72 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECC
Confidence 5799999 9999999999999999999999999998863 35565543
No 159
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.78 E-value=8.4e-06 Score=81.31 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=46.2
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.++...++..|. +..++|.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 41 ~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~ 101 (340)
T PRK13536 41 AIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVL 101 (340)
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEEC
Confidence 345556666664 34689999 99999999999999999999999999998766 444443
No 160
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.77 E-value=1.3e-05 Score=76.47 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=37.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~ 62 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLN 62 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 467777 99999999999999999999999999998655 555543
No 161
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=1.2e-05 Score=77.80 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=34.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 478888 99999999999999999999999999998754
No 162
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.74 E-value=0.00013 Score=67.65 Aligned_cols=54 Identities=33% Similarity=0.439 Sum_probs=43.5
Q ss_pred cceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEee
Q 017581 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGC 279 (369)
Q Consensus 226 ~~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~i 279 (369)
++.+.||+..+|.++ -+.+|.-+.|.|++|+|||+|+.+++.+. .. .-++|.-+
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 456899999999997 68899999999999999999999877533 33 34666653
No 163
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.74 E-value=3.8e-05 Score=70.58 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=38.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 62 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA 62 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 4578888 99999999999999999999999999998654 445443
No 164
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.74 E-value=2.4e-05 Score=79.88 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=40.1
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
+..+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.+.+
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G 64 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAG 64 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC
Confidence 45688888 99999999999999999999999999998765 5555443
No 165
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=3.6e-05 Score=73.73 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=42.5
Q ss_pred cccccccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 220 SSKLAADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 220 ~~r~~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
++-..++..+..+ ..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 68 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY 68 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3334444445432 2467777 99999999999999999999999999998765 44443
No 166
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.73 E-value=0.00014 Score=76.14 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=73.5
Q ss_pred cccceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc-CCC-eEEEEeecccchhhhHHhhhccccccc
Q 017581 224 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNEMAEVLMDFPQLTMT 299 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~d-~vV~~~iGer~~ev~~~~~~f~~~~~~ 299 (369)
...+.+.||+..+|.++. +.+|.-+.|.|++|+|||+|+.+++... ..+ -++|...-+......+..+.| ..+
T Consensus 250 ~~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~---g~~ 326 (509)
T PRK09302 250 SSNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW---GID 326 (509)
T ss_pred cccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc---CCC
Confidence 345668999999999976 9999999999999999999999876543 333 466666555555554444433 221
Q ss_pred CCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 300 ~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
+.+....+ +..++...+..... -.....+.+.+.+.+.+ ++|+||++-+..
T Consensus 327 ~~~~~~~g---~l~i~~~~~~~~~~-----~~~~~~i~~~i~~~~~~-~vVIDslt~l~~ 377 (509)
T PRK09302 327 LEKMEEKG---LLKIICARPESYGL-----EDHLIIIKREIEEFKPS-RVAIDPLSALAR 377 (509)
T ss_pred hHHHhhcC---CceeecCCcccCCH-----HHHHHHHHHHHHHcCCC-EEEEcCHHHHHH
Confidence 10001111 11222211111111 11223444555555555 789999997654
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=1.7e-05 Score=72.91 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=34.6
Q ss_pred eccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 237 D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
|.=+.+.+|++++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~ 58 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 54599999999999999999999999999998765 445443
No 168
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=2.2e-05 Score=76.74 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=43.8
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..+++.+..+..+++.+ +++.+|+-.+++|++|+|||||+++|++...++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 35556565568999999 999999999999999999999999999998774
No 169
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=3.8e-05 Score=76.13 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=35.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++|.+ +.|.+|+.++|+|+||||||||+++|++...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 5799999 9999999999999999999999999998764
No 170
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.73 E-value=4.1e-05 Score=70.10 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=37.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4578888 99999999999999999999999999998765 44544
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=1.3e-05 Score=76.91 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=38.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i 83 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 4578888 99999999999999999999999999998765 44544
No 172
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=4.6e-05 Score=72.99 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=41.2
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++-..++..+. +-.+++.+ +++.+|++++|+|++|+|||||++.|++...
T Consensus 20 ~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 20 ALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 444555555553 34678888 9999999999999999999999999998763
No 173
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=1.7e-05 Score=79.42 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=35.4
Q ss_pred eeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 236 ID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+|.=+.+.+|+.++|+|++|||||||+++|++...+ +.+.+.
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~ 58 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLN 58 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 465599999999999999999999999999998765 445443
No 174
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.71 E-value=5.4e-05 Score=70.58 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=42.7
Q ss_pred cccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 222 KLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 222 r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
-..++..+. +..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 10 ~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 67 (225)
T PRK10247 10 LQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67 (225)
T ss_pred EeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 334444443 34688888 99999999999999999999999999997654 545443
No 175
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=4.6e-05 Score=72.82 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=43.0
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+-..++..+. +-.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ |.+.|-
T Consensus 13 ~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 71 (265)
T PRK10575 13 ALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71 (265)
T ss_pred EEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 3334444442 34578888 99999999999999999999999999998654 555554
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=2e-05 Score=73.68 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred eccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 237 D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
|.=+.+.+|++++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 59 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 44489999999999999999999999999998765 445443
No 177
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.68 E-value=5e-05 Score=70.32 Aligned_cols=43 Identities=23% Similarity=0.499 Sum_probs=37.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF 64 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 577787 99999999999999999999999999998755 44544
No 178
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.68 E-value=5.1e-05 Score=71.74 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=40.0
Q ss_pred CccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 218 PVSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 218 ~~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|.++-..++..+. +..+++.+ +.+.+|+.++|+|++|+|||||+++|++..
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 5 PKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred cEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444445554443 23578888 999999999999999999999999999864
No 179
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=5.4e-05 Score=71.70 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=38.5
Q ss_pred cccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 222 KLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 222 r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
-..++..+. +..+++.+ +.+.+|++++|+|++|+|||||+++|++...
T Consensus 10 ~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 10 TENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred EeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 334444342 34578888 9999999999999999999999999998765
No 180
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.68 E-value=5e-05 Score=69.47 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=34.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +++.+|++++|+|++|+|||||+++|++...+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 377888 99999999999999999999999999998655
No 181
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=5.7e-05 Score=73.08 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=43.2
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..++..+..+..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 9 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~ 66 (283)
T PRK13636 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFD 66 (283)
T ss_pred EeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC
Confidence 34444454445688888 99999999999999999999999999998765 445443
No 182
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.67 E-value=0.00017 Score=72.25 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=72.7
Q ss_pred cceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc--------CCCeEEEEeecc--cchhhhHHhhhc
Q 017581 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDF 293 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~--------~~d~vV~~~iGe--r~~ev~~~~~~f 293 (369)
...+.||++.+|.++. +.+|.-.-|+|++|+|||+|+.+++-+. ..+.++|.-..+ +.....++.+.|
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 3459999999999865 8899999999999999999999877432 123577777544 334455555544
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
. + .....+++..+..... ....... -..+++++.+ +.=-|+|+||++-+.+
T Consensus 182 ---~--~---~~~~~l~~i~~~~~~~---~e~~~~l---l~~~~~~~~~-~~~~LIVIDSI~alfr 232 (342)
T PLN03186 182 ---G--L---NGADVLENVAYARAYN---TDHQSEL---LLEAASMMAE-TRFALMIVDSATALYR 232 (342)
T ss_pred ---C--C---ChhhhccceEEEecCC---HHHHHHH---HHHHHHHhhc-cCCCEEEEeCcHHHHH
Confidence 1 1 1234566644333221 1111111 1123334433 3334789999987644
No 183
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.67 E-value=5.2e-05 Score=70.45 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc-----CC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS-----NS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-----~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++.. .+ |.+.+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 65 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD 65 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEEC
Confidence 477888 999999999999999999999999999986 54 555554
No 184
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=1.1e-05 Score=76.68 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=60.1
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee---cccchhhhHHhhhccccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC---GERGNEMAEVLMDFPQLT 297 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i---Ger~~ev~~~~~~f~~~~ 297 (369)
.+++. ..|++|+|.+ +.+.+|+..+|+||.|.|||||.+.|.+.-.+ +.|.|.+- |....+.....-.
T Consensus 9 ~l~k~-FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~----- 82 (250)
T COG0411 9 GLSKR-FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA----- 82 (250)
T ss_pred cceee-cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce-----
Confidence 44443 4689999999 99999999999999999999999999998877 45777653 2222332222110
Q ss_pred ccCCCCCcCCCcceeEEEEeC
Q 017581 298 MTLPDGREESVMKRTTLVANT 318 (369)
Q Consensus 298 ~~~~~~~~~~~l~~t~vv~~t 318 (369)
. +||....++..+|.-|.
T Consensus 83 --R-TFQ~~rlF~~lTVlENv 100 (250)
T COG0411 83 --R-TFQITRLFPGLTVLENV 100 (250)
T ss_pred --e-ecccccccCCCcHHHHH
Confidence 0 23666666666666554
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=2e-05 Score=82.09 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=39.7
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..++..+. +..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+
T Consensus 9 ~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 9 KNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444443 45688988 99999999999999999999999999998763
No 186
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.66 E-value=5.4e-05 Score=69.44 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=37.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 467777 99999999999999999999999999998655 555554
No 187
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.66 E-value=4e-05 Score=64.46 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.2
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHH
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
|..+++.+ +.+.+|+.++|+|+||||||||+.++.
T Consensus 1 ~~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 1 GTTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 45677777 899999999999999999999999987
No 188
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.66 E-value=2.1e-05 Score=76.88 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=38.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4688888 99999999999999999999999999998765 44444
No 189
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.65 E-value=2.3e-05 Score=74.55 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=71.2
Q ss_pred eccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc-chhhhH----HhhhcccccccC
Q 017581 229 LLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER-GNEMAE----VLMDFPQLTMTL 300 (369)
Q Consensus 229 l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer-~~ev~~----~~~~f~~~~~~~ 300 (369)
+..+..+++.+ +.+.+|++++|+|++|+|||||++++++...+ +.+.+.+.-.. .....+ +...|
T Consensus 13 y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf------- 85 (235)
T COG1122 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVF------- 85 (235)
T ss_pred cCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEE-------
Confidence 44445777777 99999999999999999999999999998866 34422221111 011111 11222
Q ss_pred CCCCcCC-CcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 301 PDGREES-VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 301 ~~~~~~~-~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|.+. -+-..+|....+..+.-..+....+...+.+++...| ++++.+.. .++|+
T Consensus 86 ---Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vg---------l~~~~~r~p~~LSG 141 (235)
T COG1122 86 ---QNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVG---------LEELLDRPPFNLSG 141 (235)
T ss_pred ---ECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcC---------chhhccCCccccCC
Confidence 2211 1222333333445555555555567777888888888 66664444 44443
No 190
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=6.2e-05 Score=71.97 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=39.7
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++-..++..+. +-.+++.+ +.+.+|++++|+|++|+|||||+++|++..
T Consensus 21 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 21 ILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred eEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344445554443 34578888 999999999999999999999999999853
No 191
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.65 E-value=5.7e-05 Score=69.49 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|.
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 59 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 477888 99999999999999999999999999998755 445443
No 192
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.65 E-value=5.8e-05 Score=69.69 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 60 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 467777 99999999999999999999999999988755 445443
No 193
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.65 E-value=6.6e-05 Score=66.93 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=36.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.+
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 467777 99999999999999999999999999998755 44443
No 194
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.65 E-value=6.4e-05 Score=71.03 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=38.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.+.+
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM 64 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence 467777 99999999999999999999999999998765 5565543
No 195
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.64 E-value=6.3e-05 Score=69.82 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=37.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 73 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 4578888 99999999999999999999999999998755 44444
No 196
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.64 E-value=0.00018 Score=71.29 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=68.6
Q ss_pred cceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc--C------CCeEEEEeecc--cchhhhHHhhhc
Q 017581 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGE--RGNEMAEVLMDF 293 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~------~d~vV~~~iGe--r~~ev~~~~~~f 293 (369)
...+.||++.+|.++. +.+|.-+.|.|++|+|||+|+.+++.+. . .+.++|.-.-+ +...+.++.+.|
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~ 154 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERY 154 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4458999999999865 8899999999999999999999887532 1 12566766333 122233444332
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
. + ....++++..+...... .+..... ..+.+.+.+.+ =-|+|+||++-+.
T Consensus 155 ---~--~---~~~~~l~~i~~~~~~~~---~~~~~~l---~~~~~~~~~~~-~~LvVIDSI~al~ 204 (316)
T TIGR02239 155 ---G--L---NPEDVLDNVAYARAYNT---DHQLQLL---QQAAAMMSESR-FALLIVDSATALY 204 (316)
T ss_pred ---C--C---ChHHhhccEEEEecCCh---HHHHHHH---HHHHHhhccCC-ccEEEEECcHHHh
Confidence 1 1 12234555433332221 1111111 12333444433 3478999999763
No 197
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.64 E-value=6.2e-05 Score=70.07 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=37.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 477887 99999999999999999999999999998765 555544
No 198
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.63 E-value=2.3e-05 Score=72.31 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=33.9
Q ss_pred eccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 237 D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
|.=+.+.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 33389999999999999999999999999998765 44544
No 199
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.63 E-value=0.00022 Score=68.42 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=42.1
Q ss_pred eccCceeeeccc----------------cccCCCeEeecCCCCCChHHHHHHHHhh-cCCC-eEEEEeecc
Q 017581 229 LLTGQRVLDALF----------------PSVLGGTCAIPGAFGCGKTVISQALSKY-SNSD-TVVYVGCGE 281 (369)
Q Consensus 229 l~TGi~aID~l~----------------pi~~GQr~~Ifg~sG~GKstLl~~ia~~-~~~d-~vV~~~iGe 281 (369)
+.|||..+|.++ =+.+|.-..|.|++|+|||+|+.+++.+ +..+ -++|...-+
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 579999999997 4679999999999999999999987653 3333 466666544
No 200
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=7e-05 Score=68.46 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=37.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
-.+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 3578888 99999999999999999999999999998765 44444
No 201
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=6.9e-05 Score=67.33 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=37.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|++++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 477888 99999999999999999999999999988665 445443
No 202
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.62 E-value=5.8e-05 Score=72.51 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=41.4
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.++..+..+-.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 11 ~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (272)
T PRK15056 11 DVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIL 67 (272)
T ss_pred eEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3333343334577888 99999999999999999999999999998765 445443
No 203
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.62 E-value=6.8e-05 Score=70.30 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=38.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 63 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 3578888 99999999999999999999999999998654 5555543
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.62 E-value=6.4e-05 Score=70.27 Aligned_cols=45 Identities=20% Similarity=0.371 Sum_probs=38.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 62 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVD 62 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 4577777 99999999999999999999999999998755 555553
No 205
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.62 E-value=7e-05 Score=68.69 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 467777 99999999999999999999999999998755 555544
No 206
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=7.2e-05 Score=72.31 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=38.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ ++|.+|+.++|+|++|+|||||+++|++...+ +.+.|-+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g 68 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG 68 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 3478888 99999999999999999999999999998765 4455543
No 207
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=7.3e-05 Score=70.19 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 477888 99999999999999999999999999998765 445443
No 208
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=2.4e-05 Score=73.44 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=36.5
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+ ++|.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~ 59 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 57777 99999999999999999999999999998765 444443
No 209
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.61 E-value=7e-05 Score=70.07 Aligned_cols=46 Identities=26% Similarity=0.537 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 64 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG 64 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 4478877 99999999999999999999999999998754 5555443
No 210
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.61 E-value=7.5e-05 Score=69.03 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=37.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 4578888 99999999999999999999999999988654 44544
No 211
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.61 E-value=8e-05 Score=66.20 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=36.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 59 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV 59 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 467777 99999999999999999999999999998765 44443
No 212
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=7.6e-05 Score=68.69 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=37.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.|.+|++++|+|++|+|||||++.|++...+ +.+.|.
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 478888 99999999999999999999999999998654 555543
No 213
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.61 E-value=7.4e-05 Score=67.39 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=37.1
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD 60 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 67777 99999999999999999999999999998765 445443
No 214
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=8.5e-05 Score=70.63 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=39.0
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++-+.++..+. +-.+++.+ +++.+|+.++|+|++|+|||||+++|++...
T Consensus 13 l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 13 YQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33344444443 23578777 9999999999999999999999999998754
No 215
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.60 E-value=8.4e-05 Score=70.63 Aligned_cols=45 Identities=29% Similarity=0.292 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|-+
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 477777 99999999999999999999999999998765 5555443
No 216
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=8.1e-05 Score=68.40 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+..+++.+ +.+.+|+.++|+|++|+|||||+++|++...
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 34578888 9999999999999999999999999999865
No 217
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.60 E-value=7.4e-05 Score=71.53 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=41.3
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..++..+. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 16 ~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 16 NAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred EEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 34444342 34578888 99999999999999999999999999998765 44544
No 218
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.60 E-value=8.5e-05 Score=71.22 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=38.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFD 67 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 4577877 99999999999999999999999999998765 445443
No 219
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.60 E-value=8.1e-05 Score=70.89 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=40.3
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++-..++..+. +..+++.+ +.|.+|+.++|+|++|+|||||+++|++...
T Consensus 13 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 13 KIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred eEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344445554443 23578888 9999999999999999999999999998753
No 220
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.60 E-value=7.2e-05 Score=80.25 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=47.1
Q ss_pred ccccccccceecc---Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 219 VSSKLAADTPLLT---GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 219 ~~~r~~~~~~l~T---Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.++-+.++..|.+ +..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+.+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g 77 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECC
Confidence 4455566666643 35799998 99999999999999999999999999998755 4454443
No 221
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.60 E-value=6e-05 Score=71.76 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=39.1
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..++..+. +-.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 8 ~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 8 EKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred eeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34444343 34678888 99999999999999999999999999998754
No 222
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=8.4e-05 Score=72.12 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=44.4
Q ss_pred eccCCC-CccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 212 PVRTPR-PVSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 212 pv~~~~-~~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
|.+... +.++-..++..+. +-.+++.+ +.|.+|++++|+|++|+|||||++.|++...
T Consensus 31 ~~~~~~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 31 PAASSGETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred ccccCCCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 554433 3455556655553 24588888 9999999999999999999999999998753
No 223
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.59 E-value=8.1e-05 Score=71.16 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=38.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.|.
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 71 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR 71 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 4578888 99999999999999999999999999998765 455554
No 224
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=7.6e-05 Score=71.95 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=41.0
Q ss_pred cceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 226 DTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 226 ~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+..+..+..+++.+ ++|.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (277)
T PRK13652 10 CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIR 64 (277)
T ss_pred EEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 33343334588888 99999999999999999999999999998765 445443
No 225
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.59 E-value=8.4e-05 Score=67.60 Aligned_cols=44 Identities=25% Similarity=0.149 Sum_probs=36.3
Q ss_pred ceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++..+.+.+|++++|+|++|+|||||+++|++...+ +.+.+
T Consensus 13 ~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 58 (177)
T cd03222 13 FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW 58 (177)
T ss_pred EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEE
Confidence 345665689999999999999999999999999998755 44444
No 226
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=8.9e-05 Score=70.08 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=38.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 4578888 99999999999999999999999999998765 555544
No 227
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00014 Score=69.44 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++...
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 467777 9999999999999999999999999998754
No 228
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.58 E-value=5.4e-05 Score=68.81 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=33.2
Q ss_pred cCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 231 TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 231 TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
+-..+++.+ +++.+|++++|.|++|||||||++.+..
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 346788888 9999999999999999999999998863
No 229
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.58 E-value=8.6e-05 Score=68.04 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=37.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 60 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 3577878 99999999999999999999999999998655 445443
No 230
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.58 E-value=3.6e-05 Score=72.27 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i 59 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 467777 89999999999999999999999999987654 44443
No 231
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=8.3e-05 Score=70.14 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=34.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++...
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 577888 9999999999999999999999999999864
No 232
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=9.2e-05 Score=71.14 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=42.0
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+-+.++..+..+ .+++.+ +.+.+|+.++|+||.|.|||||++.|.+...+
T Consensus 6 ~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p 56 (254)
T COG1121 6 EVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP 56 (254)
T ss_pred EEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 344556656655 699888 99999999999999999999999999996655
No 233
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.57 E-value=8.9e-05 Score=66.55 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=37.1
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+ +++.+|++++|.|++|+|||||+++|++...+ +.+.+-
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~ 62 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEEC
Confidence 67777 99999999999999999999999999998765 555544
No 234
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=9.7e-05 Score=66.09 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=36.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 467888 99999999999999999999999999998654 44444
No 235
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=8.8e-05 Score=69.12 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 62 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILID 62 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEEC
Confidence 477888 99999999999999999999999999988754 555543
No 236
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=6.9e-05 Score=71.86 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=38.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
-.+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+-+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 62 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECC
Confidence 3578888 99999999999999999999999999998765 5555543
No 237
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.57 E-value=9.4e-05 Score=70.27 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=34.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578888 9999999999999999999999999999764
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=8.8e-05 Score=70.12 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=34.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578888 9999999999999999999999999998864
No 239
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.56 E-value=9.9e-05 Score=69.56 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 477888 99999999999999999999999999988654 445443
No 240
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00015 Score=68.92 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=33.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 477777 9999999999999999999999999998753
No 241
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.0001 Score=69.70 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=32.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++..
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 577887 999999999999999999999999999854
No 242
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.56 E-value=9.6e-05 Score=69.15 Aligned_cols=44 Identities=25% Similarity=0.451 Sum_probs=36.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc--C--CCeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS--N--SDTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~--~--~d~vV~~ 277 (369)
.+++.+ +.|.+|++++|+|++|+|||||+++|++.. . .+.+.+.
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 62 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK 62 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEEC
Confidence 467777 999999999999999999999999999973 2 3555444
No 243
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=8.9e-05 Score=71.41 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=38.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ ++|.+|+.++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 62 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIK 62 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 3578888 99999999999999999999999999988655 445443
No 244
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.55 E-value=0.0001 Score=70.69 Aligned_cols=46 Identities=30% Similarity=0.531 Sum_probs=38.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +++.+|++++|.|++|+|||||+++|++...+ +.+.+.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g 73 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 4578888 99999999999999999999999999988655 4555443
No 245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.55 E-value=8.5e-05 Score=68.58 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=36.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 63 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE
Confidence 477777 99999999999999999999999999998754 54544
No 246
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.0001 Score=69.37 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.|.+.+
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 64 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 467777 99999999999999999999999999998655 5555543
No 247
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0001 Score=72.83 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=39.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +.|.+|++++|+|++|+|||||++.|++...+ +.|.+.+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g 87 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD 87 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 4588888 99999999999999999999999999998765 5555543
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.54 E-value=0.00011 Score=69.72 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=35.3
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+-.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33577777 99999999999999999999999999998654
No 249
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.54 E-value=0.00011 Score=65.81 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~ 62 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 467777 99999999999999999999999999998765 445443
No 250
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.0001 Score=68.81 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=36.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.+.+|+.++|.|++|+|||||+++|++...+ +.+.+
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 467777 99999999999999999999999999998755 44544
No 251
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00011 Score=69.40 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=34.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +.|.+|+.++|+|++|+|||||++.|++...+
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 478888 99999999999999999999999999998654
No 252
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.54 E-value=9.8e-05 Score=67.63 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 467777 99999999999999999999999999998755 445443
No 253
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=6.2e-05 Score=78.49 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=51.5
Q ss_pred ccccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc-hh--hhHHhhhc
Q 017581 223 LAADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG-NE--MAEVLMDF 293 (369)
Q Consensus 223 ~~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~-~e--v~~~~~~f 293 (369)
+.++-.++.. .++++.+ +++.+|+|+.|+|.||||||||++.+++.-++ +.+-+.+.-.+. +| .++.+..+
T Consensus 340 ~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 340 RNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred ccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 3444444444 3799999 99999999999999999999999999987765 567776643332 22 45555443
No 254
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.53 E-value=9.9e-05 Score=67.38 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=38.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc--CC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS--NS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~--~~--d~vV~~ 277 (369)
..+++.+ +++.+|++++|+|++|+|||||+++|++.. ++ +.+.|-
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~ 71 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLIN 71 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 4578888 999999999999999999999999999986 55 445543
No 255
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00012 Score=70.59 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=38.4
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++-..++..+. +..+++.+ +.+.+|++++|+|++|+|||||++.|++..
T Consensus 21 l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 21 FEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33334444343 23578888 999999999999999999999999999864
No 256
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.53 E-value=7.4e-05 Score=69.34 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=33.3
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+++.+ +.+.+|+.++|+|++|+|||||+++|++...+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 46677 99999999999999999999999999987654
No 257
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=9.5e-05 Score=71.21 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ ++|.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 62 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS 62 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3577777 99999999999999999999999999998765 445443
No 258
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.53 E-value=4.5e-05 Score=76.30 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=34.3
Q ss_pred eccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 237 D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
|.=+.+.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 56 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 54489999999999999999999999999998765 44544
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00012 Score=70.02 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=39.6
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.-+..+..+. +..+++.+ +.+.+|++++|+|++|+|||||++.|++...
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 333334444332 34678888 9999999999999999999999999998753
No 260
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.53 E-value=9.9e-05 Score=70.55 Aligned_cols=45 Identities=29% Similarity=0.350 Sum_probs=38.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 67 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEEC
Confidence 3578888 99999999999999999999999999998765 445443
No 261
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.52 E-value=0.00011 Score=67.43 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=37.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 68 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEID 68 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 467777 99999999999999999999999999988654 445443
No 262
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0001 Score=71.58 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=38.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ ++|.+|++++|+|++|+|||||+++|++...+ +.+.+-+
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g 68 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG 68 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECC
Confidence 588888 99999999999999999999999999998765 5555543
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.52 E-value=0.00012 Score=69.75 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++...+
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 477777 99999999999999999999999999998654
No 264
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.52 E-value=0.00013 Score=69.17 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=38.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 65 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 4578888 99999999999999999999999999998765 445444
No 265
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00012 Score=70.34 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++-+.++..+. +..+++.+ ++|.+|++++|+|++|+|||||+++|++...
T Consensus 25 l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 25 FDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44445554443 23578888 9999999999999999999999999999754
No 266
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.52 E-value=0.00012 Score=70.08 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=38.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.|.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 73 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLID 73 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 3578888 99999999999999999999999999998765 555544
No 267
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.0001 Score=71.36 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=37.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 477777 99999999999999999999999999998755 44544
No 268
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00011 Score=68.81 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=38.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 65 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEEC
Confidence 3578888 99999999999999999999999999998754 555443
No 269
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00011 Score=71.32 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ ++|.+|++++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD 67 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3578888 99999999999999999999999999998765 445443
No 270
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.51 E-value=0.00013 Score=65.77 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~ 59 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 467777 99999999999999999999999999998765 445543
No 271
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.51 E-value=0.00012 Score=69.31 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=37.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 467777 99999999999999999999999999998765 445443
No 272
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00012 Score=70.56 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=38.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ ++|.+|+.++|+|++|+|||||+++|++...+ +.|.+-
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~ 70 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVD 70 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 4588888 99999999999999999999999999998765 445443
No 273
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0001 Score=70.89 Aligned_cols=44 Identities=27% Similarity=0.245 Sum_probs=37.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~ 67 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD 67 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 467777 99999999999999999999999999998765 445443
No 274
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.50 E-value=0.00014 Score=66.34 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=38.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 3578888 99999999999999999999999999998655 445443
No 275
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.49 E-value=0.00014 Score=67.38 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 68 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR 68 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence 3577888 99999999999999999999999999998755 556554
No 276
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00014 Score=68.49 Aligned_cols=38 Identities=24% Similarity=0.547 Sum_probs=34.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ +.|.+|+.++|+|++|+|||||+++|++...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3578888 9999999999999999999999999998765
No 277
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.49 E-value=0.00012 Score=67.73 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 64 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILID 64 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEEC
Confidence 478888 99999999999999999999999999988654 555543
No 278
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00011 Score=71.32 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=38.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ ++|.+|+.++|+|++|+|||||+++|++...+ +.+.|-
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIG 67 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 4578888 99999999999999999999999999998765 445543
No 279
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00014 Score=68.79 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=33.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++..
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 577888 999999999999999999999999999764
No 280
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.48 E-value=0.00014 Score=68.27 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=38.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 81 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 3477888 99999999999999999999999999998755 445443
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.48 E-value=0.00012 Score=77.33 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=42.6
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
++-..++..|..+..+++.+ +++.+|++++|+|++|+|||||+++|++...+
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p 59 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE 59 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34445555554346788999 99999999999999999999999999998755
No 282
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00014 Score=64.97 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.|.+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g 63 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG 63 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC
Confidence 467777 99999999999999999999999999998765 5555443
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.47 E-value=0.00068 Score=68.64 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=43.6
Q ss_pred cceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+.+.||+.-+|-++- +.+|+-+.|.|++|+|||||+.+++.+... .-++|..
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3459999999999975 999999999999999999999998865432 3466655
No 284
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00014 Score=68.62 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=33.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 477888 9999999999999999999999999998653
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.46 E-value=0.00091 Score=63.11 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=42.1
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHH-HHHhhcCCC-eEEEEeecccchhhhHHhh
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQ-ALSKYSNSD-TVVYVGCGERGNEMAEVLM 291 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~-~ia~~~~~d-~vV~~~iGer~~ev~~~~~ 291 (369)
+.+++.-+|-++. +.+|+.++|.|++|||||||+. .+++..+.+ -++|....+...+..+...
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 3455555665543 7899999999999999999975 445554444 3666665665555444443
No 286
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.46 E-value=7.2e-05 Score=63.54 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=31.6
Q ss_pred ecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 237 DAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 237 D~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccc
Confidence 445 88999999999999999999999999998765
No 287
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00011 Score=71.27 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=38.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.|.+|++++|+|++|+|||||++.|++...+ +.+.+.+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 477888 99999999999999999999999999998765 5555543
No 288
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.46 E-value=0.0005 Score=67.69 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=71.9
Q ss_pred eeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcC--------CCeEEEEeecc--cchhhhHHhhhccc
Q 017581 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMDFPQ 295 (369)
Q Consensus 228 ~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~--------~d~vV~~~iGe--r~~ev~~~~~~f~~ 295 (369)
.+.||+..+|.++. +.+|.-..|+|++|+|||+|+.+++-+.. .+.++|.-+.+ +.....+..+.|
T Consensus 83 ~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~-- 160 (317)
T PRK04301 83 KITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEAL-- 160 (317)
T ss_pred ccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHc--
Confidence 47899999999976 88999999999999999999998875421 23577877655 234444444433
Q ss_pred ccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcE-EEEecchHHHHHH
Q 017581 296 LTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNV-SMMADSTSRWAEA 360 (369)
Q Consensus 296 ~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~V-Lli~Dsltr~A~A 360 (369)
. . .....+++..++... ++ .++. ..-..+.+.+.+ +.++ |+|+||++-+-++
T Consensus 161 -g--~---~~~~~l~~i~~~~~~--~~-~~~~---~~~~~l~~~i~~-~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 161 -G--L---DPDEVLDNIHVARAY--NS-DHQM---LLAEKAEELIKE-GENIKLVIVDSLTAHFRA 213 (317)
T ss_pred -C--C---ChHhhhccEEEEeCC--CH-HHHH---HHHHHHHHHHhc-cCceeEEEEECchHHhhh
Confidence 1 1 112345664444322 11 1221 111233344433 3344 8999999976443
No 289
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00016 Score=66.31 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.|.
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~ 61 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ 61 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 467777 99999999999999999999999999998765 555554
No 290
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00011 Score=68.55 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=47.1
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG 280 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG 280 (369)
.+++.|.+=++|++.+ |...+||-+||+|+.|.||||+|+||+....| +.+.+.++.
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d 65 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecc
Confidence 4555566667788777 99999999999999999999999999999877 456666654
No 291
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00015 Score=69.91 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=39.7
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++-..++.-+. +-.+++.+ +++.+|+.++|+|++|+|||||+++|++...
T Consensus 22 l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 22 MAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred EEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 33444555453 34577777 9999999999999999999999999998765
No 292
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00015 Score=68.63 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=33.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-.+++.+ +.|.+|+.++|+|++|+|||||+++|++..
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578888 999999999999999999999999999875
No 293
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00018 Score=69.17 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=39.8
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++-..++..+. +-.+++.+ +.+.+|+.++|+|++|+|||||+++|++...
T Consensus 25 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 25 ALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344445555553 23567777 9999999999999999999999999998854
No 294
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.45 E-value=0.00016 Score=66.22 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=33.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578888 99999999999999999999999999997
No 295
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.45 E-value=0.00019 Score=65.42 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=34.6
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+| + +.+.+|++++|.|++|+|||||+++|++...+ +.+.+
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 456 6 89999999999999999999999999998655 44444
No 296
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00017 Score=69.22 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=34.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ ++|.+|+.++|+|++|+|||||+++|++...
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3578888 9999999999999999999999999998743
No 297
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00014 Score=70.44 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=37.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+ +.+.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~ 66 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI 66 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 578888 99999999999999999999999999998766 44444
No 298
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00016 Score=68.31 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=32.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++..
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467777 999999999999999999999999999864
No 299
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00012 Score=68.99 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=32.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++.
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 577888 99999999999999999999999999976
No 300
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.43 E-value=0.00013 Score=68.75 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=33.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467777 9999999999999999999999999998764
No 301
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.42 E-value=0.00022 Score=74.91 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=36.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.+++.+ |.+.+|+.++|+|.|||||||++..|.+....
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 5799999 99999999999999999999999999988754
No 302
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.42 E-value=0.00019 Score=62.58 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=34.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 467777 89999999999999999999999999998754
No 303
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.42 E-value=0.00099 Score=69.55 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=77.7
Q ss_pred cccccceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhc-CCC-eEEEEeecccchhhhHHhhhccccc
Q 017581 222 KLAADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNEMAEVLMDFPQLT 297 (369)
Q Consensus 222 r~~~~~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~d-~vV~~~iGer~~ev~~~~~~f~~~~ 297 (369)
+....+.+.||+..+|.++ =+.+|.-+.|.|++|+|||||+.+++... ..+ -++|..--|......+-.+.| .
T Consensus 238 ~~~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l---g 314 (484)
T TIGR02655 238 QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW---G 314 (484)
T ss_pred ccccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc---C
Confidence 3345667999999999996 38899999999999999999999876543 443 578877677666666665543 2
Q ss_pred ccCCCCCcCCCcce-eEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 298 MTLPDGREESVMKR-TTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 298 ~~~~~~~~~~~l~~-t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
+++ . ....+ ...+.... |. ....-.....+-+...+.+.+ +++.||++-+..
T Consensus 315 ~~~---~--~~~~~g~l~~~~~~--p~--~~~~~~~~~~i~~~i~~~~~~-~vvIDsi~~~~~ 367 (484)
T TIGR02655 315 IDF---E--EMEQQGLLKIICAY--PE--SAGLEDHLQIIKSEIADFKPA-RIAIDSLSALAR 367 (484)
T ss_pred CCh---H--HHhhCCcEEEEEcc--cc--cCChHHHHHHHHHHHHHcCCC-EEEEcCHHHHHH
Confidence 211 1 11111 12222211 11 111122344444555555655 578999997754
No 304
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00014 Score=70.30 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ +.|.+|+.++|+|++|+|||||+++|++...+
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3578888 99999999999999999999999999987653
No 305
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.0002 Score=67.73 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=33.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++..
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477777 999999999999999999999999999875
No 306
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0002 Score=69.02 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=38.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.|.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 67 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKID 67 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 4578888 99999999999999999999999999988765 555443
No 307
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.0002 Score=68.59 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=34.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
-.+++.+ +.|.+|+.++|+|++|+|||||+++|++...
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3578888 9999999999999999999999999998764
No 308
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00019 Score=69.56 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=33.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+++.+ +.|.+|+.++|+|++|+|||||+++|++..
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3577777 999999999999999999999999999863
No 309
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.40 E-value=0.0002 Score=66.36 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=37.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +++.+|++++|.|++|+|||||++.|++...+ +.+.+-
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~ 65 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVL 65 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 3567777 99999999999999999999999999998654 445443
No 310
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.0002 Score=67.63 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=33.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 467777 9999999999999999999999999998753
No 311
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0002 Score=67.56 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=34.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 3577777 9999999999999999999999999998763
No 312
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00019 Score=77.05 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=46.8
Q ss_pred ccccccccceecc----------Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 219 VSSKLAADTPLLT----------GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 219 ~~~r~~~~~~l~T----------Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.++-..++..|.. +.++++.+ +.|.+|+.++|+|++|||||||+++|++...+ +.+.|.+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g 385 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC
Confidence 4455555555542 25789999 99999999999999999999999999998755 5565543
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.39 E-value=0.00017 Score=75.17 Aligned_cols=55 Identities=22% Similarity=0.415 Sum_probs=43.2
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..++..|. +..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+.+
T Consensus 8 ~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g 65 (501)
T PRK10762 8 KGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG 65 (501)
T ss_pred eeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 34444443 45688888 99999999999999999999999999998765 5555543
No 314
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.39 E-value=0.00017 Score=67.43 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=33.0
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+|+.++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 45 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE 45 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 78999999999999999999999999998765 555443
No 315
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.39 E-value=0.00079 Score=69.69 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=47.3
Q ss_pred cceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcC-C-CeEEEEeecccchhhhH
Q 017581 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN-S-DTVVYVGCGERGNEMAE 288 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~-~-d~vV~~~iGer~~ev~~ 288 (369)
...+.||+.-+|-++. +.+|+-+.|.|++|+|||||+.+++.+.. . .-++|...-+....+.+
T Consensus 59 ~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 59 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred CCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 3458999999999975 88999999999999999999999876542 2 34667663333333333
No 316
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0002 Score=68.50 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=32.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++..
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 567777 999999999999999999999999999764
No 317
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.39 E-value=0.00051 Score=75.33 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred eeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHh-hcCC-CeEEEEeecccchhhhHHhhhcccccccCCC
Q 017581 228 PLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSK-YSNS-DTVVYVGCGERGNEMAEVLMDFPQLTMTLPD 302 (369)
Q Consensus 228 ~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~-d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~ 302 (369)
.+.||+..+|.++. +.+|.-+.|+|++|+|||+|+.+++. .... ..++|.-.-+.-+ .+..+.| . +
T Consensus 40 ~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~--~~~A~~l---G--v-- 110 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD--PDYAKKL---G--V-- 110 (790)
T ss_pred eecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh--HHHHHHc---C--C--
Confidence 58999999999987 78999999999999999999987543 2233 4566666333233 2344432 1 1
Q ss_pred CCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 303 GREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 303 ~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
+ +++. ++. ..+ +.++ ++.+++.+-+.+.=-|+|+||++-+.
T Consensus 111 --D---l~~l-lv~-~~~--~~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 111 --D---TDSL-LVS-QPD--TGEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred --C---hhHe-EEe-cCC--CHHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 1 1222 222 222 2233 34445555555666688999998666
No 318
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.38 E-value=0.00023 Score=67.18 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=32.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 478887 99999999999999999999999999986
No 319
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00022 Score=66.68 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=37.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 467777 99999999999999999999999999998765 44544
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.37 E-value=0.00017 Score=75.46 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=38.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+||+++|+|+||+|||||++.|.+..++ |.+.+.+
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 478888 99999999999999999999999999998876 4555543
No 321
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00016 Score=68.19 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=33.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 477888 9999999999999999999999999999753
No 322
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00023 Score=64.77 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=32.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+.+|+.++|.|++|+|||||++.|++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467777 89999999999999999999999999985
No 323
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.37 E-value=0.00051 Score=71.25 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=44.1
Q ss_pred ceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEeecc
Q 017581 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCGE 281 (369)
Q Consensus 227 ~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~iGe 281 (369)
..+.||+.-+|.++ -+.+|+-+.|.|++|+|||||+.+++.+. .. .-++|.. +|
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs-~E 131 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS-GE 131 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-Cc
Confidence 35899999999997 49999999999999999999999887643 33 2466765 44
No 324
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00021 Score=74.58 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=42.4
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..++..|. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.|.|.
T Consensus 9 ~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~ 65 (510)
T PRK09700 9 AGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65 (510)
T ss_pred eeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEEC
Confidence 34444442 34578888 99999999999999999999999999998765 455554
No 325
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00022 Score=67.80 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=34.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ +++.+|+.++|+|++|+|||||+++|++...
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3577777 9999999999999999999999999998754
No 326
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.36 E-value=0.00071 Score=64.99 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=71.3
Q ss_pred ccceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc-------C-CCeEEEEeecc--cchhhhHHhhh
Q 017581 225 ADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-------N-SDTVVYVGCGE--RGNEMAEVLMD 292 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~-------~-~d~vV~~~iGe--r~~ev~~~~~~ 292 (369)
-...+.||++.||.++- |..|+-.=|+|+||+|||.|+.+++-+. . .+.++|.-..- +.....++.+.
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~ 95 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAER 95 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhc
Confidence 34559999999999974 8899999999999999999999886432 1 23467765422 22334444443
Q ss_pred cccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHH
Q 017581 293 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 360 (369)
Q Consensus 293 f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A 360 (369)
| . + ....++++..+.-.. + ......... .+...+.+. +==|||+||++.+-+.
T Consensus 96 ~---~--~---~~~~~l~~I~v~~~~-~---~~~l~~~L~--~l~~~l~~~-~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 96 F---G--L---DPEEILDNIFVIRVF-D---LEELLELLE--QLPKLLSES-KIKLIVIDSIAALFRS 148 (256)
T ss_dssp T---T--S----HHHHHHTEEEEE-S-S---HHHHHHHHH--HHHHHHHHS-CEEEEEEETSSHHHHH
T ss_pred c---c--c---ccchhhhceeeeecC-C---HHHHHHHHH--HHHhhcccc-ceEEEEecchHHHHHH
Confidence 3 1 1 234567765554433 2 122222211 234555544 3448899999877543
No 327
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.35 E-value=0.00017 Score=73.32 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=41.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~~~ 278 (369)
++|+|.+ +++.+||.+||+|.||+|||||..++.+...+ +.+.|.+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G 347 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDG 347 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECC
Confidence 7899999 99999999999999999999999999988765 6777775
No 328
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.35 E-value=0.00014 Score=79.11 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=41.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG 283 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~ 283 (369)
.+++.+ +.|..||+++|+|.||||||||++++.+.-.+ |.+-+.+.--..
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 467777 99999999999999999999999999998766 567776654433
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.35 E-value=0.00019 Score=68.80 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=32.8
Q ss_pred eeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 235 aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
+++.+..+.+|++++|+|++|+|||||++.|++...++
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 55555458999999999999999999999999988763
No 330
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00024 Score=67.39 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=36.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 467777 99999999999999999999999999997654 44444
No 331
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.35 E-value=0.00022 Score=67.07 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=32.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+.+|++++|+|++|+|||||+++|++.
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467777 99999999999999999999999999997
No 332
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.00018 Score=68.65 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=40.3
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
++-..++..+. +-.+++.+ +.+.+|++++|+|++|+|||||+++|++...+
T Consensus 11 i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~ 62 (257)
T PRK14246 11 FNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62 (257)
T ss_pred eeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33344444443 23567778 99999999999999999999999999998765
No 333
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.34 E-value=0.0002 Score=66.62 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=33.8
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++.+ +++.+|+.++|.|++|+|||||+++|++...
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 467777 8999999999999999999999999998765
No 334
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.34 E-value=0.00021 Score=66.76 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4578888 99999999999999999999999999998655
No 335
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.34 E-value=0.00015 Score=67.65 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=32.0
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
++.+ +.+.+|+.++|+|++|+|||||+++|++...+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4455 88999999999999999999999999998754
No 336
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.33 E-value=0.00025 Score=68.96 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=34.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.+.+|++++|+|++|+|||||++.|++...+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3577777 99999999999999999999999999998654
No 337
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.33 E-value=0.00026 Score=67.18 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 61 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 477777 99999999999999999999999999998755 555443
No 338
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.32 E-value=0.00021 Score=75.86 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=38.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +++.+||+++|+|+||||||||++.|++...+ |.|.+.+
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 468888 99999999999999999999999999998766 4555544
No 339
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.0003 Score=68.91 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=40.3
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+.-..++..+. +-.+++.+ ++|.+|+.++|+|++|+|||||++.|++...
T Consensus 45 ~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 45 KLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred eEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344445554443 24688888 9999999999999999999999999998753
No 340
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00035 Score=65.79 Aligned_cols=54 Identities=31% Similarity=0.409 Sum_probs=45.7
Q ss_pred ccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc
Q 017581 230 LTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG 283 (369)
Q Consensus 230 ~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~ 283 (369)
.+|-+.+|.+ +.+..|+-.+|+||.|.|||||++.+.+...+ +.|-|.+.....
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 5678999999 99999999999999999999999999998765 557666654433
No 341
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.00032 Score=66.15 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=37.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC-----CCeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN-----SDTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~-----~d~vV~~~ 278 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++... .+.+.+.+
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g 66 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG 66 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence 467777 9999999999999999999999999998752 35555443
No 342
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00028 Score=67.93 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=34.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ ++|.+|++++|+|++|+|||||++.|++...+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3467777 99999999999999999999999999998655
No 343
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00022 Score=67.36 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=32.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+.+|+.++|+|++|+|||||+++|++.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 467777 99999999999999999999999999874
No 344
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0003 Score=73.95 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=48.3
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG 283 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~ 283 (369)
.++..++.|-+++..+ +++.+||++.|+|+||||||||+..|++...+ +.+.+.++-.+.
T Consensus 325 ~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~ 387 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD 387 (559)
T ss_pred ceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccc
Confidence 5555667776788777 99999999999999999999999999998875 556666544433
No 345
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.28 E-value=0.0019 Score=59.05 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=55.7
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEeecc-cchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~iGe-r~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t 318 (369)
+.+|+-+.|.|++|+|||+|+.+++.+. .. .-++|.-..+ ......+..+.+ ....+++..++. .
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~-----------~~~~~~~i~~~~-~ 76 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDR-----------PERALSNFIVFE-V 76 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhC-----------hHHHhcCEEEEE-C
Confidence 6789999999999999999999876543 33 3477777543 333333333221 011234433333 2
Q ss_pred CCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHH
Q 017581 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (369)
Q Consensus 319 ~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~ 359 (369)
.+ ..+.. ..-..+.+++.+.+.+ ++++||++.+..
T Consensus 77 ~~--~~~~~---~~~~~l~~~~~~~~~~-lvVIDSis~l~~ 111 (209)
T TIGR02237 77 FD--FDEQG---VAIQKTSKFIDRDSAS-LVVVDSFTALYR 111 (209)
T ss_pred CC--HHHHH---HHHHHHHHHHhhcCcc-EEEEeCcHHHhH
Confidence 11 11111 1122334445444333 678899997654
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00035 Score=75.24 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
+-..++..| .+-.+++.+ +.|.+|++++|+|++|+|||||+++|++...+ |.+.+
T Consensus 314 ~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 314 KMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred EEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 333444444 244578888 99999999999999999999999999998755 44444
No 347
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.27 E-value=0.00026 Score=74.32 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=39.6
Q ss_pred ccccceecc---Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 223 LAADTPLLT---GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 223 ~~~~~~l~T---Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..++..|.. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...
T Consensus 9 ~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 9 ENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred eceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344444532 35688888 9999999999999999999999999998865
No 348
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00033 Score=69.64 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=39.7
Q ss_pred cccccccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 220 SSKLAADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 220 ~~r~~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++-..++..+..+ -.+++.+ ++|.+|++++|+|++|+|||||++.|++...
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3444444444322 3578888 9999999999999999999999999998763
No 349
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.27 E-value=0.00052 Score=72.70 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=39.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
-.+++.+ +++.+|++++|+|+||+|||||++.|.+.. + |.+.+.+.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~ 411 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI 411 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCE
Confidence 3578888 999999999999999999999999999987 4 56666654
No 350
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.26 E-value=0.00031 Score=73.42 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=43.4
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+-..++..|. +..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 13 ~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 71 (510)
T PRK15439 13 CARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG 71 (510)
T ss_pred EEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3344444443 34588888 99999999999999999999999999998765 445443
No 351
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.26 E-value=0.00029 Score=74.36 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=39.3
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.++..|..+-.+++.+ +.+.+|++++|+|++|+|||||+++|++...+
T Consensus 9 nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p 57 (552)
T TIGR03719 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE 57 (552)
T ss_pred eEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444443234578888 99999999999999999999999999998755
No 352
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.26 E-value=0.0012 Score=69.12 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=54.4
Q ss_pred eeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHh-hcCC-C-eEEEEeecccchhhhHHhhhc
Q 017581 228 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK-YSNS-D-TVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 228 ~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~-d-~vV~~~iGer~~ev~~~~~~f 293 (369)
.+.|||..+|.++ -+.+|+-+.|.|++|+|||+|+.+++. .+.. + -|+|...-+...++.+-...|
T Consensus 12 ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 12 KLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred cccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 5899999999997 499999999999999999999998764 3333 3 478888888888777777664
No 353
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.25 E-value=0.00026 Score=76.84 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=39.8
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
+-.+++.+ ++|.+||+++|+|+||+|||||++.|++..++ |.+.+.+
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 34678888 99999999999999999999999999998765 5555554
No 354
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.25 E-value=0.00027 Score=74.73 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=39.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
.+++.+ +++.+||+++|+|+||+|||||++.|++..++ |.|.+.+.
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 367777 99999999999999999999999999998876 55666543
No 355
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00035 Score=66.13 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=42.9
Q ss_pred eccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 229 LLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 229 l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+-.+.++..+ +.+.+|+.++|+|+.|+|||||++.|++...+ +.|.|.+
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G 64 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECC
Confidence 34558899888 99999999999999999999999999988764 6666664
No 356
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.00024 Score=76.50 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=37.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
-.+++.+ +.|.+|++++|+|++|+|||||+++|++...+ |.|.+
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4578888 99999999999999999999999999998655 44444
No 357
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00027 Score=74.18 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=38.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
-.+++.+ ++|.+|++++|+|++|+|||||++.|++...+ +.+.|
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4688888 99999999999999999999999999998755 44544
No 358
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.23 E-value=0.00037 Score=66.30 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=36.0
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i 80 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVI 80 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEE
Confidence 67777 99999999999999999999999999997654 44544
No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.22 E-value=0.00027 Score=75.96 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=41.3
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.++..|. +..+++.+ +.|.+|++++|+|++|+|||||+++|++...+ |.+.+
T Consensus 8 ~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 8 GAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred eEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 4444443 34678888 99999999999999999999999999998765 34444
No 360
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.22 E-value=0.00017 Score=77.68 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=39.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..+++.+ +.+.+|++++|.|++|+|||||++.|++...+ +.+.|-+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 69 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAG 69 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 4578777 99999999999999999999999999998765 4566544
No 361
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.22 E-value=0.00043 Score=72.45 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=45.7
Q ss_pred ccccccccceecc---C-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 219 VSSKLAADTPLLT---G-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 219 ~~~r~~~~~~l~T---G-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.++-..++..+.. | ..+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.|
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 4555556665632 2 4689888 99999999999999999999999999998754 55655
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.22 E-value=0.00023 Score=66.66 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.7
Q ss_pred cCceeeecc-ccccCCCeEeecCCCCCChHHHHH
Q 017581 231 TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQ 263 (369)
Q Consensus 231 TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~ 263 (369)
.++.+++.+ +++.+|+.++|+|+||||||||+.
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHH
Confidence 346788888 999999999999999999999973
No 363
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00054 Score=72.27 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=39.6
Q ss_pred cccceeccC--ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 224 AADTPLLTG--QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 224 ~~~~~l~TG--i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.++..+..+ ..+++.+ +.+.+|++++|+|++|+|||||++.|++...+
T Consensus 26 nL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P 76 (549)
T PRK13545 26 DLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP 76 (549)
T ss_pred EEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 444444454 3578888 99999999999999999999999999998755
No 364
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.21 E-value=0.00025 Score=73.64 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=55.2
Q ss_pred cccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--C-eEEEEee---cccchhhhHHhhhccc
Q 017581 224 AADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--D-TVVYVGC---GERGNEMAEVLMDFPQ 295 (369)
Q Consensus 224 ~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d-~vV~~~i---Ger~~ev~~~~~~f~~ 295 (369)
.+++++++. .++++.+ +++.+||.++|.|+|||||||||+ ++...+ + .+.+.+. +.+.+.++.+.+.|
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VF-- 84 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIF-- 84 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHH--
Confidence 455666666 4778887 999999999999999999999999 333322 3 4555543 33345555554555
Q ss_pred ccccCCCCCcC-CCcceeEEEEeCC
Q 017581 296 LTMTLPDGREE-SVMKRTTLVANTS 319 (369)
Q Consensus 296 ~~~~~~~~~~~-~~l~~t~vv~~t~ 319 (369)
|.. ...++.+|-.|+.
T Consensus 85 --------Q~fn~~~~~lIvaINlG 101 (504)
T TIGR03238 85 --------DGFNQSNKPLIVGINMG 101 (504)
T ss_pred --------HhhhcCCCCEEEEEehh
Confidence 221 1236677777764
No 365
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.20 E-value=0.00026 Score=73.46 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=38.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
..+++.+ +++.+|++++|+|++|+|||||+++|++...+ +.+.+
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~ 62 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQS 62 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEE
Confidence 4588888 99999999999999999999999999998755 44544
No 366
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00032 Score=66.87 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=34.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +++.+|+.++|+|++|+|||||+++|++...+
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 467777 99999999999999999999999999988654
No 367
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00046 Score=65.11 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=32.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ +++.+|+.++|+|++|+|||||++.|++..
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 467777 999999999999999999999999999763
No 368
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.20 E-value=0.0004 Score=72.65 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=37.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc--CC--CeEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS--NS--DTVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~--~~--d~vV~ 276 (369)
..+++.+ +.+.+|++++|+|++|+|||||+++|++.. .+ +.+.|
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence 4578888 999999999999999999999999999984 33 55554
No 369
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.19 E-value=0.0004 Score=64.73 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=31.8
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 40 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVA 40 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 46889999999999999999999999998655 445443
No 370
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00041 Score=72.32 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=41.6
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.++..+. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.|-
T Consensus 9 ~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 64 (501)
T PRK11288 9 GIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64 (501)
T ss_pred eeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 3444343 34578888 99999999999999999999999999998654 555443
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.17 E-value=0.0015 Score=68.19 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=53.5
Q ss_pred eeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHh-hc-CC-CeEEEEeecccchhhhHHhhhc
Q 017581 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK-YS-NS-DTVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 228 ~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~-~~-~~-d~vV~~~iGer~~ev~~~~~~f 293 (369)
.+.|||.-+|.++. +.+|...+|-|++|||||+|+.+++- .+ +. .-++|....|...+..+-...|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 37899999999986 88999999999999999999998753 33 32 3478888788888777776654
No 372
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.17 E-value=0.003 Score=58.60 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=46.4
Q ss_pred Cceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhh-cCCC-eEEEEeecccchhhhHHhhhc
Q 017581 232 GQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY-SNSD-TVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 232 Gi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~-~~~d-~vV~~~iGer~~ev~~~~~~f 293 (369)
||..+|-++ -+.+|.-+.|.|++|+|||+++.+++.. ...+ .++|...-+....+.+....|
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc
Confidence 677788875 5779999999999999999999977643 3334 477777777666666655543
No 373
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.16 E-value=0.00051 Score=72.37 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=39.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
.+++.+ +.+.+||+++|+|++|+|||||++.|++..++ |.+.+.+.
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 478888 99999999999999999999999999998765 45555543
No 374
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.00049 Score=72.08 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=46.1
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC-CCeEEEEeec
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN-SDTVVYVGCG 280 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~-~d~vV~~~iG 280 (369)
+-..++--+.-.-++++++ ++|.+|.|++|+|++||||||+++++-+..+ .+-|.+.++-
T Consensus 353 ~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~d 414 (591)
T KOG0057|consen 353 EFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQD 414 (591)
T ss_pred EEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCee
Confidence 3334444445555689999 9999999999999999999999999998765 3556666543
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.00036 Score=66.58 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=36.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.-+++.+ |++.+|+++||+|..|.|||||++.|++-..|+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 6778888 999999999999999999999999999877663
No 376
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.15 E-value=0.00038 Score=75.23 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=39.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
.+++.+ ++|.+||+++|+|+||||||||++.|++..++ |.+.+.+.
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 515 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ 515 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 467788 99999999999999999999999999998766 56666654
No 377
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.13 E-value=0.00068 Score=71.14 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=45.7
Q ss_pred ccccccccceecc----------Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC-CCeEEEE
Q 017581 219 VSSKLAADTPLLT----------GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN-SDTVVYV 277 (369)
Q Consensus 219 ~~~r~~~~~~l~T----------Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~-~d~vV~~ 277 (369)
.++-+.++..+.. +..+++.+ +.+.+|+.++|+|++|+|||||+++|++... .+.|.|-
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~ 345 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFD 345 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEEC
Confidence 4555566666642 25689999 9999999999999999999999999998763 3555543
No 378
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.13 E-value=0.0004 Score=75.33 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=39.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
.+++.+ ++|.+|++++|+|+||+|||||++.|++..++ |.+.+.+.
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 541 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI 541 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 467778 99999999999999999999999999998765 55666543
No 379
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.13 E-value=0.00046 Score=71.77 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=38.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC----CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS----DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~----d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+-
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~ 63 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWS 63 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4578888 99999999999999999999999999997653 445443
No 380
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.12 E-value=0.00056 Score=73.54 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=42.0
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
+-..++..+. +-.+++.+ +.|.+|++++|+|++|+|||||+++|++...+ |.+.+
T Consensus 321 ~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 321 EMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378 (635)
T ss_pred EEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 3334444342 34578888 99999999999999999999999999998755 44543
No 381
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.12 E-value=0.00048 Score=65.24 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=35.9
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~~ 277 (369)
+++.+ +.+.+|+.++|+|++|+|||||++.|++.... +.+.|-
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~ 55 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFA 55 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEEC
Confidence 67777 99999999999999999999999999987533 445443
No 382
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.12 E-value=0.00055 Score=66.37 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=37.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~~~ 278 (369)
.+++.+ +.|.+|++++|+|++|+|||||+++|++.... +.+.+-+
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g 64 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDG 64 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECC
Confidence 467777 99999999999999999999999999987643 5454433
No 383
>PTZ00243 ABC transporter; Provisional
Probab=97.11 E-value=0.00059 Score=80.34 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=49.0
Q ss_pred cccccccceeccCce-eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc
Q 017581 220 SSKLAADTPLLTGQR-VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER 282 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~-aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer 282 (369)
++-+.++-.+..+.+ +++.+ +.|.+||+++|+|++|+|||||++.|.+..++ |.|.+.++--+
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~ 1375 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIG 1375 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 444455555555544 88889 99999999999999999999999999998765 66766665433
No 384
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00044 Score=72.15 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=38.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
++++.+ +++.+|++++|+|++|+|||||+++|++...+ +.+.|-+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g 324 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC
Confidence 478888 99999999999999999999999999998755 5565543
No 385
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00079 Score=62.85 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=72.2
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccc---hhhhHHhhhccccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERG---NEMAEVLMDFPQLT 297 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~---~ev~~~~~~f~~~~ 297 (369)
.+++.+.+- .++|.. +.|.+|+-..|+||.|.|||||+.++++..+. +.+-+.+--... .+.+.-+..+.
T Consensus 6 nv~K~y~~~-~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILk--- 81 (252)
T COG4604 6 NVSKSYGTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILK--- 81 (252)
T ss_pred hhhHhhCCE-EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHH---
Confidence 455545444 667777 99999999999999999999999999998765 456665543333 44444443321
Q ss_pred ccCCCCCcCCCcceeEEEEeCCC--CCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 298 MTLPDGREESVMKRTTLVANTSN--MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 298 ~~~~~~~~~~~l~~t~vv~~t~~--~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|+.....|.+|-.=+++ -|-....+...-...+-+++.... |+...+-| .|+||
T Consensus 82 ------Q~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~---------L~~l~dryLd~LSG 138 (252)
T COG4604 82 ------QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH---------LEDLSDRYLDELSG 138 (252)
T ss_pred ------hhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc---------ccchHHHhHHhccc
Confidence 33333333333221111 111222233344445555555555 55556666 66665
No 386
>PLN03073 ABC transporter F family; Provisional
Probab=97.10 E-value=0.00063 Score=74.37 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=39.0
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..++..+..+-.+++.+ +.|.+|++++|+|++|+|||||++.|++...+
T Consensus 512 ~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p 561 (718)
T PLN03073 512 SDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP 561 (718)
T ss_pred EeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 33444343333478888 99999999999999999999999999998755
No 387
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.09 E-value=0.0002 Score=85.67 Aligned_cols=59 Identities=20% Similarity=0.112 Sum_probs=47.2
Q ss_pred ccccccccceecc-Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 219 VSSKLAADTPLLT-GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 219 ~~~r~~~~~~l~T-Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.++-+.+++.+.+ +..+++.+ +.+.+||..+|+|++|+|||||+++|++...+ |.+.+-
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~ 990 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEEC
Confidence 3445566666653 46799999 99999999999999999999999999998766 445443
No 388
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00058 Score=71.29 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred ccccccccceecc--Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCeEEEE
Q 017581 219 VSSKLAADTPLLT--GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYV 277 (369)
Q Consensus 219 ~~~r~~~~~~l~T--Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~vV~~ 277 (369)
.++-..++..+.. +..+++.+ +++.+|+.++|+|++|+|||||+++|++... .+.+.+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~ 323 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEEC
Confidence 3444555555532 45688888 9999999999999999999999999999864 3555554
No 389
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.08 E-value=0.00067 Score=71.65 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=42.3
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+++-..++.-+..+-..+..+ +.|.+|+|++|+|+.|+|||||++.|++...+
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~ 374 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc
Confidence 455555555565555667777 99999999999999999999999999877654
No 390
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00056 Score=71.04 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=38.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 58 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEEC
Confidence 4578888 99999999999999999999999999998765 445443
No 391
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.06 E-value=0.00067 Score=70.58 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=43.8
Q ss_pred cccccccceec--cCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCeEEEE
Q 017581 220 SSKLAADTPLL--TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYV 277 (369)
Q Consensus 220 ~~r~~~~~~l~--TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~vV~~ 277 (369)
++-..++..+. .+..+++.+ +.+.+|+.++|+|++|+|||||+++|++... .+.+.+-
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~ 321 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFIN 321 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEEC
Confidence 34444444442 235688888 9999999999999999999999999999865 2555543
No 392
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00058 Score=59.86 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=33.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +.+.+|+..+|+|++|+|||||++.|++...+
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 466666 99999999999999999999999999987755
No 393
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.06 E-value=0.00049 Score=65.48 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=28.9
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+.+|++++|+|++|+|||||+++|++...+
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 46779999999999999999999999998655
No 394
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.05 E-value=0.0007 Score=70.24 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=43.5
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCeEEEEe
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYVG 278 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~vV~~~ 278 (369)
++-..++..|. +-.+++.+ +.+.+|++++|+|++|+|||||+++|++... .+.+.|-+
T Consensus 261 l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g 322 (490)
T PRK10938 261 IVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG 322 (490)
T ss_pred EEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec
Confidence 34444444443 23578888 9999999999999999999999999998754 35555543
No 395
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.05 E-value=0.00067 Score=70.96 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=38.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+|++++|.|+||+|||||++.|++..++ |.+.+.+
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g 383 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 367888 99999999999999999999999999998876 4555554
No 396
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.03 E-value=0.00062 Score=72.27 Aligned_cols=46 Identities=28% Similarity=0.472 Sum_probs=39.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
.+++.+ +++.+|++++|+|+||+|||||++.|++..++ |.+.+.+.
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~ 402 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ 402 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 467778 99999999999999999999999999998765 55665543
No 397
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.001 Score=61.04 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=63.4
Q ss_pred CccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHhhhcc
Q 017581 218 PVSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVLMDFP 294 (369)
Q Consensus 218 ~~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~~~f~ 294 (369)
|.++....++.+..+ +.-+.. |.+-+|+-++|+|.||+|||||++.|+....+ +.+.|-.-+...++...+-+.
T Consensus 5 PLL~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa-- 81 (258)
T COG4107 5 PLLSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA-- 81 (258)
T ss_pred cceeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH--
Confidence 455666667755444 455555 99999999999999999999999999987755 567777644444444433321
Q ss_pred cccccCCCCCcCCCcceeEEEEeCCCCC
Q 017581 295 QLTMTLPDGREESVMKRTTLVANTSNMP 322 (369)
Q Consensus 295 ~~~~~~~~~~~~~~l~~t~vv~~t~~~~ 322 (369)
++ +---.-+|.+|-.|..|..
T Consensus 82 eR-------R~L~RTeWG~VhQnP~DGL 102 (258)
T COG4107 82 ER-------RRLLRTEWGFVHQNPRDGL 102 (258)
T ss_pred HH-------HHHhhhccceeecCccccc
Confidence 00 0001247888888887754
No 398
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.99 E-value=0.0094 Score=56.70 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=48.3
Q ss_pred cceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc-CC-C-eEEEEeecccchhhhHHh
Q 017581 226 DTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS-NS-D-TVVYVGCGERGNEMAEVL 290 (369)
Q Consensus 226 ~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d-~vV~~~iGer~~ev~~~~ 290 (369)
+.-+.||+..+|.+ --+.+|+.+.|.|++|+|||+|+.+++.+. .. + .++|...-+...+..+.+
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHH
Confidence 34689999999998 568899999999999999999999876553 22 3 355555555554554443
No 399
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.99 E-value=0.00069 Score=71.87 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=39.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
.+++.+ +.+.+|++++|+|+||+|||||++.|++..++ |.+.+.+.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 468888 99999999999999999999999999998765 55666543
No 400
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0021 Score=61.56 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=46.9
Q ss_pred eccCCCCccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 212 PVRTPRPVSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 212 pv~~~~~~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
|+....+.++-+.++- .+-|=+.++.+ +++..||+-.|.|+.|.|||||++++++...+
T Consensus 24 ~~~~~~~li~l~~v~v-~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 24 PIEINEPLIELKNVSV-RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred CCCCCcceEEecceEE-EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 3444444555555554 46677888999 99999999999999999999999999988765
No 401
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.98 E-value=0.00037 Score=83.54 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=43.4
Q ss_pred cccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 224 AADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 224 ~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+..+ ..+++.+ +.|.+|+.++|+|++|+|||||+++|++...+ |.+.+.+
T Consensus 1942 nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G 2000 (2272)
T TIGR01257 1942 ELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG 2000 (2272)
T ss_pred EEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 444444432 5689999 99999999999999999999999999998766 4454443
No 402
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.97 E-value=0.00067 Score=72.22 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=38.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++..++ |.+.+.+
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 467888 99999999999999999999999999998766 5565543
No 403
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00079 Score=70.67 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=35.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.+.+|++++|+|++|+|||||++.|++...+
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 371 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP 371 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3578878 99999999999999999999999999998755
No 404
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.97 E-value=0.00067 Score=60.96 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=29.4
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+||.+|+-+-|.||||||||||+.-|++....
T Consensus 23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~ 54 (213)
T COG4136 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG 54 (213)
T ss_pred EEecCCcEEEEECCCCccHHHHHHHHHhhccc
Confidence 89999999999999999999999988877655
No 405
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00067 Score=70.73 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=37.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.|.+|++++|+|++|+|||||++.|++...+ +.+.|.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 313 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLD 313 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEEC
Confidence 467888 99999999999999999999999999998755 445553
No 406
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.96 E-value=0.0059 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+.-+.|.|++|||||+|++.++++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 407
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.95 E-value=0.00077 Score=73.00 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.|.+||+++|.|+||+|||||++.|++..++ |.+.+.+
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 367777 99999999999999999999999999998765 5555544
No 408
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.95 E-value=0.00083 Score=70.83 Aligned_cols=44 Identities=30% Similarity=0.491 Sum_probs=37.3
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
+++.+ +++.+|++++|.|++|+|||||++.|++...+ |.+.+.+
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 57777 99999999999999999999999999988765 5555443
No 409
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.95 E-value=0.00073 Score=71.58 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++..++ +.+.+.
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~ 375 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFH 375 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEEC
Confidence 467777 99999999999999999999999999998765 445443
No 410
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.94 E-value=0.0009 Score=69.29 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=75.2
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe--EEEEeecccchhhhH-----Hhh
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT--VVYVGCGERGNEMAE-----VLM 291 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~--vV~~~iGer~~ev~~-----~~~ 291 (369)
++-..+++.|. |+.|.|.. +.+.+|+-.+|+|..|.|||||++++.+...||. +.+-+--.+-+.=.+ +.+
T Consensus 5 l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 5 LEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 44557888888 99999999 9999999999999999999999999999887753 555443222222122 122
Q ss_pred hcccccccCCCCCcCCCcceeEEEEeCCCCC---HHhHhhhhHHHHHHHHHHHHCCCcE
Q 017581 292 DFPQLTMTLPDGREESVMKRTTLVANTSNMP---VAAREASIYTGITIAEYFRDMGYNV 347 (369)
Q Consensus 292 ~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~---~~~r~~a~~~a~tiAEyfr~~G~~V 347 (369)
+| |...+.++-+|.-|-.-.. ...+.....+...++|.-+..|.+|
T Consensus 84 Vh----------QHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v 132 (501)
T COG3845 84 VH----------QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV 132 (501)
T ss_pred Ee----------eccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC
Confidence 22 5566667766665553322 2223344444444444444455443
No 411
>PLN03073 ABC transporter F family; Provisional
Probab=96.93 E-value=0.00066 Score=74.17 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=39.2
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.-..++..|. +-.+++.+ ++|..|+|++|+|++|+|||||+++|++.
T Consensus 178 I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 178 IHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 33345555553 45688888 99999999999999999999999999974
No 412
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.92 E-value=0.00081 Score=70.75 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.+ +.+.+|++++|+|++|||||||++.+++...+ +.+.+.
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 378 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLD 378 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 467777 99999999999999999999999999998765 445444
No 413
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.92 E-value=0.00095 Score=61.77 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=35.6
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..|++.+ |++.+||.++|+|..|+|||||++||++-..+
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P 65 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC
Confidence 4677888 99999999999999999999999999988765
No 414
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.91 E-value=0.00085 Score=70.91 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=38.0
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
+++.+ +++.+||+++|+|++|+|||||++.|++..++ |.+.+.+
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g 403 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 67878 99999999999999999999999999998766 4555543
No 415
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0012 Score=60.90 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=34.0
Q ss_pred eccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 237 D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
|.=+++.+ +.++|+|++|+|||||+++|++...+ +.+.+-
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 57 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLN 57 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 55599999 99999999999999999999998765 445443
No 416
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.00074 Score=63.64 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=33.3
Q ss_pred eccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 229 LLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 229 l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
++..-.|+... +.|.+++-.+++||||||||||++.+=+
T Consensus 16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 34456788777 9999999999999999999999997644
No 417
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=96.88 E-value=0.00022 Score=70.51 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=23.2
Q ss_pred ecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 250 IPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 250 Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
|+|++|||||||+++|++...+ +.+.|.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~ 30 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLD 30 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEEC
Confidence 6899999999999999998765 455554
No 418
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.87 E-value=0.00097 Score=72.64 Aligned_cols=45 Identities=29% Similarity=0.442 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+||+++|+|+||+|||||++.|.+..++ |.|.+.+
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 367777 99999999999999999999999999998765 5555543
No 419
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0028 Score=64.40 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=48.2
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhH
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 326 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r 326 (369)
.+.+.||+|||||||+..||+..+....-+.++--.-.|+++++
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~------------------------------------ 93 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREII------------------------------------ 93 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHH------------------------------------
Confidence 46789999999999999999987765433333222122333332
Q ss_pred hhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHH
Q 017581 327 EASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALR 362 (369)
Q Consensus 327 ~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~r 362 (369)
.-|+-++..|+.++|++|.+-||-.++.
T Consensus 94 --------e~a~~~~~~gr~tiLflDEIHRfnK~QQ 121 (436)
T COG2256 94 --------EEARKNRLLGRRTILFLDEIHRFNKAQQ 121 (436)
T ss_pred --------HHHHHHHhcCCceEEEEehhhhcChhhh
Confidence 2344555568888888888888876664
No 420
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.85 E-value=0.00078 Score=70.21 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
++++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.|.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 312 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLD 312 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 357888 99999999999999999999999999998765 445554
No 421
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.83 E-value=0.0012 Score=69.87 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=39.1
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
+-.+++.+ +.+.+|++++|+|+||+|||||++.+.+..++ |.+.+
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 45677777 88999999999999999999999999998876 55655
No 422
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.82 E-value=0.0031 Score=52.72 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=48.4
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC-------CCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEE
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN-------SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVA 316 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~-------~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~ 316 (369)
.+.-+.|.|++|+|||+++..+++... ..-+++.-+.... ....+...+-+ .-+.-...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~---------~l~~~~~~---- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILE---------ALGLPLKS---- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHH---------HHT-SSSS----
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHH---------HhCccccc----
Confidence 456678999999999999999887652 2224566555444 33444433210 00000000
Q ss_pred eCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHH
Q 017581 317 NTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 357 (369)
Q Consensus 317 ~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~ 357 (369)
+.......-.+.++++..+. ++|++|+.-++
T Consensus 69 ---------~~~~~~l~~~~~~~l~~~~~-~~lviDe~~~l 99 (131)
T PF13401_consen 69 ---------RQTSDELRSLLIDALDRRRV-VLLVIDEADHL 99 (131)
T ss_dssp ---------TS-HHHHHHHHHHHHHHCTE-EEEEEETTHHH
T ss_pred ---------cCCHHHHHHHHHHHHHhcCC-eEEEEeChHhc
Confidence 22223333555666666554 89999999765
No 423
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.81 E-value=0.0013 Score=69.66 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=35.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.|.+|++++|+|++|+|||||+++|++...+
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 376 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3578888 99999999999999999999999999988765
No 424
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.81 E-value=0.0014 Score=71.12 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=40.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG 280 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG 280 (369)
.+++.+ +.+.+||+++|.|+||+|||||++.|++...+ |.+.+.+.-
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 367777 99999999999999999999999999998765 567666543
No 425
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.81 E-value=0.0012 Score=69.49 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=37.4
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
..++.+ +.+.+|++++|.|++|+|||||++.|++..++ +.|-+.+
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 356666 99999999999999999999999999998765 4455443
No 426
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.80 E-value=0.0032 Score=59.55 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.9
Q ss_pred eeeecc-ccccCCC-eEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGG-TCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQ-r~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+++..+ ..+.+++ .+.|.|++|+|||||++.+++..++
T Consensus 30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 455555 5566655 7889999999999999999987664
No 427
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.79 E-value=0.0012 Score=71.50 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=37.0
Q ss_pred eccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 229 LLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 229 l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+..|-.+++.+ +.+.+|++++|+|++|+|||||++.|++..++
T Consensus 461 ~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~ 504 (659)
T TIGR00954 461 TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV 504 (659)
T ss_pred CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33444688888 99999999999999999999999999997654
No 428
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0011 Score=68.75 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=38.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.+++.+ +.+.+|++++|+|++|+|||||++.|++...+ +.+.+.+
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 468888 99999999999999999999999999988755 4455543
No 429
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.77 E-value=0.0013 Score=69.38 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=35.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.|.+|++++|+|++|+|||||+++|++...+
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 374 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3578888 99999999999999999999999999988755
No 430
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0019 Score=63.09 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=60.5
Q ss_pred eccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeeccc----------chhhhHHhhhcccccc
Q 017581 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGER----------GNEMAEVLMDFPQLTM 298 (369)
Q Consensus 229 l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer----------~~ev~~~~~~f~~~~~ 298 (369)
..-|--+||.-+.+.--.-..|||.||.|||||+++|++...+|.=.+.+-|+. .-+-+.+..+|
T Consensus 8 ~~lG~~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF----- 82 (352)
T COG4148 8 QRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF----- 82 (352)
T ss_pred hhcCceEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe-----
Confidence 456677888888877657899999999999999999999998864222222221 13445566666
Q ss_pred cCCCCCcCCCcceeEEEEeCCC
Q 017581 299 TLPDGREESVMKRTTLVANTSN 320 (369)
Q Consensus 299 ~~~~~~~~~~l~~t~vv~~t~~ 320 (369)
|++.++++-+|--|-..
T Consensus 83 -----QDARLFpH~tVrgNL~Y 99 (352)
T COG4148 83 -----QDARLFPHYTVRGNLRY 99 (352)
T ss_pred -----eccccccceEEecchhh
Confidence 88999999999877643
No 431
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.73 E-value=0.0026 Score=52.84 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.3
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeE
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~v 274 (369)
++|.|++|||||+|+..++++.+...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 578999999999999999999865443
No 432
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.72 E-value=0.0014 Score=68.57 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=36.8
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+ +.+.+|++++|+|++|+|||||+++|++...+ +.+.+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 323 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLN 323 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEEC
Confidence 57777 99999999999999999999999999998654 455543
No 433
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.71 E-value=0.0095 Score=53.82 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=55.8
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEEEeecc-cchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhH
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 326 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGe-r~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r 326 (369)
+.|.|++|+|||+++.+++..... -++|....+ .+.|.++.++.. +....-.|.++-.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~-~~~y~at~~~~d~em~~rI~~H----------~~~R~~~w~t~E~---------- 60 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGG-PVTYIATAEAFDDEMAERIARH----------RKRRPAHWRTIET---------- 60 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC-CeEEEEccCcCCHHHHHHHHHH----------HHhCCCCceEeec----------
Confidence 579999999999999998866333 344545444 357778887653 2333345655421
Q ss_pred hhhhHHHHHHHHHHHHC-CCcEEEEecchHHHHHHH
Q 017581 327 EASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEAL 361 (369)
Q Consensus 327 ~~a~~~a~tiAEyfr~~-G~~VLli~Dsltr~A~A~ 361 (369)
...+++.+.+. +.+ .+++|+||-|...+
T Consensus 61 ------~~~l~~~l~~~~~~~-~VLIDclt~~~~n~ 89 (169)
T cd00544 61 ------PRDLVSALKELDPGD-VVLIDCLTLWVTNL 89 (169)
T ss_pred ------HHHHHHHHHhcCCCC-EEEEEcHhHHHHHh
Confidence 23344555543 444 68999999998776
No 434
>PLN03130 ABC transporter C family member; Provisional
Probab=96.69 E-value=0.0016 Score=77.10 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=46.9
Q ss_pred ccccccceeccCc-eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc
Q 017581 221 SKLAADTPLLTGQ-RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER 282 (369)
Q Consensus 221 ~r~~~~~~l~TGi-~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer 282 (369)
+-+.++-.+..+. .+++.+ ++|.+||+++|+|++|+|||||++.|.+..++ |.|.+.++--+
T Consensus 1239 ~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~ 1304 (1622)
T PLN03130 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDIS 1304 (1622)
T ss_pred EEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecc
Confidence 3334444444333 488888 99999999999999999999999999998765 56766665433
No 435
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.69 E-value=0.0015 Score=69.02 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=37.5
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.++..| .+-..++.. +.+.+|+|+||+|..|+||||||+.|++...+
T Consensus 8 ~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 8 NLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred eeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 344445 333455555 99999999999999999999999999998765
No 436
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0019 Score=67.48 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=49.2
Q ss_pred CccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 218 PVSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 218 ~~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
|+++-+.+++.| -|++|+|.. +.+.+|+-.+++|..|+|||||++.|++-..+ +.+.+.+
T Consensus 7 ~ll~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G 69 (500)
T COG1129 7 PLLELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG 69 (500)
T ss_pred ceeeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECC
Confidence 355566777754 578999999 99999999999999999999999999987665 4465553
No 437
>PF13173 AAA_14: AAA domain
Probab=96.65 E-value=0.0069 Score=51.48 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=25.1
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcC-CCeEEEEe
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSN-SDTVVYVG 278 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~-~d~vV~~~ 278 (369)
++-+.|.|++|||||||+.++++... +..++|.-
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeec
Confidence 45688999999999999999887654 23344443
No 438
>PLN03232 ABC transporter C family member; Provisional
Probab=96.64 E-value=0.0017 Score=76.23 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=45.1
Q ss_pred ccccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec
Q 017581 223 LAADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG 280 (369)
Q Consensus 223 ~~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG 280 (369)
+.++-.+..+ -.+++.+ +.|.+||+++|+|++|+|||||++.+.+..++ |.|.+.++-
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d 1299 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD 1299 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence 3444444333 2478888 99999999999999999999999999998765 556666544
No 439
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.59 E-value=0.0022 Score=75.28 Aligned_cols=43 Identities=26% Similarity=0.515 Sum_probs=38.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
.+++.+ +.|.+|++++|+|++|||||||+++|++..++ |.|.+
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 588888 99999999999999999999999999998776 55655
No 440
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.58 E-value=0.002 Score=75.81 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=46.3
Q ss_pred cccccceeccCc-eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeeccc
Q 017581 222 KLAADTPLLTGQ-RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGER 282 (369)
Q Consensus 222 r~~~~~~l~TGi-~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer 282 (369)
-+.++-.+..+. .+++.+ +.|.+||+++|+|++|+|||||++.|.+..++ |.|.+.++--+
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIA 1351 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcc
Confidence 334444443332 488888 99999999999999999999999999998765 56766665443
No 441
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.56 E-value=0.002 Score=69.07 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=34.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4477888 99999999999999999999999999987654
No 442
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.55 E-value=0.0077 Score=57.61 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|+||+|||+|+..|....
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999776554
No 443
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.55 E-value=0.0042 Score=70.61 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=39.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
+.+++.| +.+.+||.++|+|+|||||||+..+|-+.-++ +.+.+-+
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg 1051 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG 1051 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 5677788 99999999999999999999999999999877 4455543
No 444
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.0049 Score=64.30 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=49.0
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG 280 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG 280 (369)
++-..++--+.+|-.++... +++..||.+.++|+||.||||+++.+-+.-+. +.+.+-+..
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd 601 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD 601 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch
Confidence 44456666678888888777 99999999999999999999999999887653 667666543
No 445
>PRK13409 putative ATPase RIL; Provisional
Probab=96.53 E-value=0.0028 Score=67.89 Aligned_cols=48 Identities=23% Similarity=0.067 Sum_probs=38.3
Q ss_pred ccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 225 ADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
++..|...-.+++.+-.+.+|+.++|+|++|+|||||++.|++...++
T Consensus 79 ~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~ 126 (590)
T PRK13409 79 PVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPN 126 (590)
T ss_pred ceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 444454322467777789999999999999999999999999987664
No 446
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.52 E-value=0.0026 Score=57.61 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.|+.+.|.|+||+|||||+++|++...+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3789999999999999999999887654
No 447
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.50 E-value=0.0028 Score=58.53 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.4
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
+..|..++|.|++|+|||||+++|+.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHH
Confidence 33478999999999999999998864
No 448
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.50 E-value=0.002 Score=75.64 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=36.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ +.|.+||+++|+|+||||||||++.|.+.-++
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3578888 99999999999999999999999999998876
No 449
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.49 E-value=0.002 Score=62.66 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=36.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.|+-.+ +.|.+|+++|.+|+.|.||||+++|+.+...| +.|-+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 355444 99999999999999999999999999987765 5554444
No 450
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.48 E-value=0.006 Score=60.69 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=63.9
Q ss_pred ceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHH-HhhcCC-CeEEEEeecccchhhhHHhhhcccccccCC
Q 017581 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQAL-SKYSNS-DTVVYVGCGERGNEMAEVLMDFPQLTMTLP 301 (369)
Q Consensus 227 ~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~i-a~~~~~-d~vV~~~iGer~~ev~~~~~~f~~~~~~~~ 301 (369)
+.+.||..++|..++ +.+|.-+=|+|++++|||||+... ++.... ..|+|.- .|..- ..++.+.+
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~l-d~~~a~~l-------- 101 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-AEHAL-DPEYAESL-------- 101 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS----HHHHHHT--------
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-Ccccc-hhhHHHhc--------
Confidence 468999999999988 568888999999999999999854 443333 4567766 34443 23333331
Q ss_pred CCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchH
Q 017581 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTS 355 (369)
Q Consensus 302 ~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dslt 355 (369)
+-. +++..++- . + .. .-|+.++|.+.+.|.-.++++||+.
T Consensus 102 ---Gvd-l~rllv~~-P-~--~~------E~al~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 102 ---GVD-LDRLLVVQ-P-D--TG------EQALWIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp ---T---GGGEEEEE---S--SH------HHHHHHHHHHHHTTSESEEEEE-CT
T ss_pred ---Ccc-ccceEEec-C-C--cH------HHHHHHHHHHhhcccccEEEEecCc
Confidence 111 45544433 2 1 12 3467888888877876789999975
No 451
>PLN03211 ABC transporter G-25; Provisional
Probab=96.47 E-value=0.0022 Score=69.44 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=35.6
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+-.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~ 120 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQG 120 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34688888 99999999999999999999999999987643
No 452
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.46 E-value=0.039 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.3
Q ss_pred EeecCCCCCChHHHHHHHHhhcC
Q 017581 248 CAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+.+.|++|+||||++..+++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 56899999999999999997765
No 453
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.0044 Score=66.88 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=34.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ ++|.+|+.++++||||.||||++..+-+.-+|
T Consensus 481 ~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 481 VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3467777 99999999999999999999999999877654
No 454
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=0.0032 Score=71.52 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=40.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
++.++.+ +.|..||.++|+|+|||||||+++.|.+.-+| +.|-+-+
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG 414 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDG 414 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcC
Confidence 6788888 99999999999999999999999999999887 4455543
No 455
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.43 E-value=0.0025 Score=58.00 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=58.6
Q ss_pred ccccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhh--cCCCeEEEEee--------cccc-hh-hhHHh
Q 017581 223 LAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGC--------GERG-NE-MAEVL 290 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~--~~~d~vV~~~i--------Ger~-~e-v~~~~ 290 (369)
+.++..+.+-....|.-+.+..|+.+.++||||.|||+|++.+--. .+.+...++.- +++. ++ -+++.
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 4566666666777788899999999999999999999999964222 22233333321 1111 11 13445
Q ss_pred hhcccccccCCCCCcCCCcceeEEEEeCCCCC
Q 017581 291 MDFPQLTMTLPDGREESVMKRTTLVANTSNMP 322 (369)
Q Consensus 291 ~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~ 322 (369)
++| |++.+-+..+|+-|--..|
T Consensus 86 mvf----------qqy~lwphltv~enlieap 107 (242)
T COG4161 86 MVF----------QQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred hhh----------hhhccCchhHHHHHHHhhh
Confidence 555 7888888888876664443
No 456
>PRK13409 putative ATPase RIL; Provisional
Probab=96.42 E-value=0.0032 Score=67.39 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=33.0
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.++.+ +.+.+|++++|+|++|+|||||+++|++...+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p 391 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP 391 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36666 78999999999999999999999999998765
No 457
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=96.38 E-value=0.0014 Score=61.19 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=60.3
Q ss_pred ccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe-ecccchhhhHHhhhcccccccCCCCCc
Q 017581 230 LTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG-CGERGNEMAEVLMDFPQLTMTLPDGRE 305 (369)
Q Consensus 230 ~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~-iGer~~ev~~~~~~f~~~~~~~~~~~~ 305 (369)
-.|.+|+..+ +++..|+--+|+||.|.||||++-.|.+...+ +.+.|-+ .--+.-+..++... .... +||.
T Consensus 15 F~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~----GIGR-KFQ~ 89 (249)
T COG4674 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA----GIGR-KFQK 89 (249)
T ss_pred EcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh----ccCc-cccC
Confidence 3589999999 99999999999999999999999999988876 4566665 43444333333321 1111 3477
Q ss_pred CCCcceeEEEEeC
Q 017581 306 ESVMKRTTLVANT 318 (369)
Q Consensus 306 ~~~l~~t~vv~~t 318 (369)
++.+...+|..|-
T Consensus 90 PtVfe~ltV~eNL 102 (249)
T COG4674 90 PTVFENLTVRENL 102 (249)
T ss_pred CeehhhccHHHHH
Confidence 8877777776553
No 458
>PRK08118 topology modulation protein; Reviewed
Probab=96.38 E-value=0.0031 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+|+.|+|++|+|||||++.|++..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 68999999999999999999987643
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.36 E-value=0.032 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.7
Q ss_pred CCeEeecCCCCCChHHHHHHHHh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
|+-..|.|++|+|||+|+.++|-
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHH
Confidence 55678999999999999998764
No 460
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.35 E-value=0.0034 Score=60.38 Aligned_cols=82 Identities=16% Similarity=0.278 Sum_probs=62.5
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHhhhcccccccC
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~~~f~~~~~~~ 300 (369)
.+++.|.. -.|+|.+ +.+.+|+-.|++|+.|.||||..+||.+...+ +.|-|-+ ++-..+..+.+=-+ |
T Consensus 7 ~vtK~Fg~-k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g-~~~~~~~~~rIGyL-----P- 78 (300)
T COG4152 7 GVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG-GPLSQEIKNRIGYL-----P- 78 (300)
T ss_pred cchhccCc-eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC-cchhhhhhhhcccC-----h-
Confidence 44454544 3788888 99999999999999999999999999999877 5566655 66666666666433 3
Q ss_pred CCCCcCCCcceeEEEE
Q 017581 301 PDGREESVMKRTTLVA 316 (369)
Q Consensus 301 ~~~~~~~~l~~t~vv~ 316 (369)
.+.++.++.+|..
T Consensus 79 ---EERGLy~k~tv~d 91 (300)
T COG4152 79 ---EERGLYPKMTVED 91 (300)
T ss_pred ---hhhccCccCcHHH
Confidence 4678888887754
No 461
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.34 E-value=0.021 Score=50.75 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=31.5
Q ss_pred EeecCCCCCChHHHHHHHHhhc-CCC-eEEEEeecccchhhhHHhhh
Q 017581 248 CAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNEMAEVLMD 292 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~-~~d-~vV~~~iGer~~ev~~~~~~ 292 (369)
+.|.|++|+|||+|+.+++... ..+ -++|...-+...++.+....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHH
Confidence 5789999999999999876543 333 36676666666666555444
No 462
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.31 E-value=0.0072 Score=57.49 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=32.6
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhh--c--CCCeEEEEeecccchh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKY--S--NSDTVVYVGCGERGNE 285 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~--~--~~d~vV~~~iGer~~e 285 (369)
...+.++|.|.+|+|||||+..+++. . +-|.++|.-.+.....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 56778999999999999999998866 2 2377777777665443
No 463
>PRK07261 topology modulation protein; Provisional
Probab=96.29 E-value=0.004 Score=55.94 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.2
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+|++|+|.+|+|||||+..+++..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987643
No 464
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.29 E-value=0.021 Score=51.60 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=52.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccch-hhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHh
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGN-EMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~-ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~ 325 (369)
++.|.|++|+|||+++..++...+.. ++|...+...+ |.++-+..- +...--.|.++-...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~-~~~iat~~~~~~e~~~ri~~h----------~~~R~~~w~t~E~~~------- 64 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ-VLYIATAQPFDDEMAARIAHH----------RQRRPAHWQTVEEPL------- 64 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC-cEeCcCCCCChHHHHHHHHHH----------HhcCCCCCeEecccc-------
Confidence 68999999999999999998765433 56666676543 344444331 222234576653311
Q ss_pred HhhhhHHHHHHHHHHHH-CCCcEEEEecchHHHHHH
Q 017581 326 REASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEA 360 (369)
Q Consensus 326 r~~a~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A 360 (369)
.+++.+.+ ....=++++|+||-|...
T Consensus 65 ---------~l~~~i~~~~~~~~~VlID~Lt~~~~n 91 (170)
T PRK05800 65 ---------DLAELLRADAAPGRCVLVDCLTTWVTN 91 (170)
T ss_pred ---------cHHHHHHhhcCCCCEEEehhHHHHHHH
Confidence 13333433 111227899999999653
No 465
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.27 E-value=0.0041 Score=57.20 Aligned_cols=39 Identities=33% Similarity=0.402 Sum_probs=31.8
Q ss_pred ccCceee-ecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 230 LTGQRVL-DAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 230 ~TGi~aI-D~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++.|.. +.+ +++.+| ..+|+|++|+|||||+..|....
T Consensus 6 ~~~fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 6 LKGFKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred EeCCcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 4556666 555 788999 99999999999999999987553
No 466
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.26 E-value=0.0035 Score=59.27 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=39.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
++++.+ ++|.+||++-|+|..|.|||||++.|++...+ +.|.+.+.
T Consensus 20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~ 68 (263)
T COG1101 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV 68 (263)
T ss_pred HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECce
Confidence 677888 99999999999999999999999999998866 44655543
No 467
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.25 E-value=0.003 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+++|.|+||+||||+++.++...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998753
No 468
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.022 Score=52.55 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEee--cccchhh----------hHHhhhcccccccCCCCCcCCCcce
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC--GERGNEM----------AEVLMDFPQLTMTLPDGREESVMKR 311 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~i--Ger~~ev----------~~~~~~f~~~~~~~~~~~~~~~l~~ 311 (369)
+|.-+.|.||||+|||||++++-...+- ...+... ..|..|+ .+|-.- + .....+.|
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l-~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~-------i---~~~~fLE~ 71 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL-------I---ERDEFLEW 71 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe-EEEEEeccCCCCCCCcCCceeEeCCHHHHHHH-------H---hcCCcEEE
Confidence 7888999999999999999988665411 1222221 2222222 233222 1 45678999
Q ss_pred eEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEec
Q 017581 312 TTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMAD 352 (369)
Q Consensus 312 t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~D 352 (369)
+.+.-|----| ..-.|-...+|+||+|-.|
T Consensus 72 a~~~gnyYGT~-----------~~~ve~~~~~G~~vildId 101 (191)
T COG0194 72 AEYHGNYYGTS-----------REPVEQALAEGKDVILDID 101 (191)
T ss_pred EEEcCCcccCc-----------HHHHHHHHhcCCeEEEEEe
Confidence 99986542211 1111222357888888777
No 469
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=96.17 E-value=0.0044 Score=65.54 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=35.6
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|...|+.| +-+..||.++|-||+|||||+|++++++.=
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc
Confidence 89999988 999999999999999999999999998754
No 470
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0021 Score=59.38 Aligned_cols=114 Identities=18% Similarity=0.293 Sum_probs=71.5
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee---------cc----cchhhh----HHhhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC---------GE----RGNEMA----EVLMDF 293 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i---------Ge----r~~ev~----~~~~~f 293 (369)
.++.+. ++-.+|.-+.|+|.||+||||+++-|--...+ +.|.+.+= |. ..+-++ ++.++|
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 555666 78899999999999999999999977433333 33322210 00 011122 233343
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCC-HHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMP-VAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~-~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|...+-...++.-|....| -........+-..+-.||+.+| +..-+++| ..+||
T Consensus 100 ----------Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVG---------i~ek~~~YP~~LSG 155 (256)
T COG4598 100 ----------QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVG---------IAEKADAYPAHLSG 155 (256)
T ss_pred ----------hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhC---------chhhhhcCccccCc
Confidence 6666666666666666544 2455555555555566778899 77777787 77765
No 471
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.14 E-value=0.0053 Score=72.21 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=39.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEEEeec
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVYVGCG 280 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~~~iG 280 (369)
-.+++.+ +.|.+||+++|+|.+|+|||||++.|.+.... |.|.+.++-
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~d 1281 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVS 1281 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEE
Confidence 3578888 99999999999999999999999999887543 566666543
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.11 E-value=0.0046 Score=56.29 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.3
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+|+.++|.|+||+|||||++.+++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4799999999999999999999988754
No 473
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.11 E-value=0.042 Score=51.89 Aligned_cols=118 Identities=23% Similarity=0.281 Sum_probs=68.2
Q ss_pred cccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHH-hhcCCCe-EEEEeecccchhhhHHhhhcccccccCC
Q 017581 224 AADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALS-KYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLP 301 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia-~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~ 301 (369)
..++.+..| |.-|+-+.|.|+.|+|||.|.++++ +....+. +-|+. - ...+++|+...-.+..++
T Consensus 16 elDkrLGGG---------iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs-T--e~T~refi~qm~sl~ydv- 82 (235)
T COG2874 16 ELDKRLGGG---------IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS-T--ELTVREFIKQMESLSYDV- 82 (235)
T ss_pred HHHhhccCC---------CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE-e--chhHHHHHHHHHhcCCCc-
Confidence 444556777 5669999999999999999999887 4445665 44444 2 356667766542333332
Q ss_pred CCCcCCCcceeEEEEeCCCCCH-HhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 302 DGREESVMKRTTLVANTSNMPV-AAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 302 ~~~~~~~l~~t~vv~~t~~~~~-~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
.+-.+.-...++....++. ..+-.+-..=..+.|+.+..-+||+ |.|||+-+|
T Consensus 83 ---~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dVi-IIDSls~~~ 136 (235)
T COG2874 83 ---SDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVI-IIDSLSAFA 136 (235)
T ss_pred ---hHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEE-EEecccHHh
Confidence 2223333444444322222 2222222333445666665566665 569998665
No 474
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.11 E-value=0.0086 Score=56.87 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=31.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCCCeEEEEee-cccchhhhHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC-GERGNEMAEVLM 291 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~i-Ger~~ev~~~~~ 291 (369)
-+.+.||+|||||||+..||+..+.....+.+. =++..+...++.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~ 97 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILT 97 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHH
Confidence 368899999999999999999998876655542 244566666654
No 475
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0081 Score=55.14 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ +++..|+++++-|+||.|||||++++-.+-.+
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~ 63 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC
Confidence 4577777 99999999999999999999999987554444
No 476
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.09 E-value=0.005 Score=65.77 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=34.4
Q ss_pred ccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 230 LTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 230 ~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+-|-..|+.+ +.+.+|+++.|-|+||||||+|++.||+.=
T Consensus 403 p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 403 PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3344667777 999999999999999999999999999864
No 477
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.03 E-value=0.0046 Score=56.88 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.9
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+|..++|.|++|+|||||++.|++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999999987654
No 478
>PF05729 NACHT: NACHT domain
Probab=96.00 E-value=0.014 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+.|.|++|+||||++..++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4689999999999999988754
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.99 E-value=0.0053 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=23.0
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|+.++|.|++|+|||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 7889999999999999999998864
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.99 E-value=0.0065 Score=55.01 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=25.4
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.|+.+.|+|++|+|||||++.+++...+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999987654
No 481
>PRK05973 replicative DNA helicase; Provisional
Probab=95.96 E-value=0.044 Score=52.35 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=40.2
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhc-CCC-eEEEEeecccchhhhHHhhhc
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~d-~vV~~~iGer~~ev~~~~~~f 293 (369)
-+.+|+-+.|.|++|+|||+|+.+++.+. ..+ -++|...-+...++.+-...|
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc
Confidence 47899999999999999999999876543 334 366666677777777666553
No 482
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.94 E-value=0.019 Score=58.71 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=35.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMD 292 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~ 292 (369)
..+.|.|++|||||||+..|++..+.+.+.+........+++++++.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEE 83 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHH
Confidence 36889999999999999999998887766555544434556666654
No 483
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.90 E-value=0.015 Score=52.14 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=32.9
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhc-C-----------CCeEEEEeecccchhhhHHhhh
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYS-N-----------SDTVVYVGCGERGNEMAEVLMD 292 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~-----------~d~vV~~~iGer~~ev~~~~~~ 292 (369)
+.+|+...|.|++|+|||+++.+++... . ..-++|........++.+.+..
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHH
Confidence 3489999999999999999999765422 1 2235555544444466666543
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.90 E-value=0.0065 Score=55.10 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=31.7
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+.| +.+.+|+.++|.|++|+|||||++.+++..+++
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3455 678899999999999999999999999877654
No 485
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.89 E-value=0.011 Score=62.35 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=36.0
Q ss_pred eccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 229 LLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 229 l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.-.++|.||.+ +.+ +|-.+.|.|+|||||||+++.|++..+
T Consensus 268 ~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 268 RCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred EeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35669999999 666 999999999999999999999997763
No 486
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.88 E-value=0.025 Score=57.51 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=26.0
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCCCeEEEE
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYV 277 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~ 277 (369)
-++|.||+|||||.++..|++..+...+++.
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 4889999999999999999999877554444
No 487
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.86 E-value=0.04 Score=51.98 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=29.5
Q ss_pred eeeeccccccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 234 ~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
..-|.-+.+.+|++++|.|++|+||||++++|+.
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446668889999999999999999999998875
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.84 E-value=0.0071 Score=53.95 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
|+.+.|.|+||+|||||++.|+....
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999987654
No 489
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0067 Score=57.69 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=36.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC----CeEEEEe
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS----DTVVYVG 278 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~----d~vV~~~ 278 (369)
..+.++ +++..|+-..|+||.|+|||||+..|+++-+- +-|+|-+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~G 67 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG 67 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECC
Confidence 456677 99999999999999999999999999988642 4455543
No 490
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.011 Score=54.68 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=36.3
Q ss_pred ccccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEeec
Q 017581 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVGCG 280 (369)
Q Consensus 238 ~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~iG 280 (369)
.-+++..|+-+-|-|+.|+|||||+++||+...++ .|-|-.++
T Consensus 21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~ 65 (209)
T COG4133 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEP 65 (209)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCC
Confidence 33899999999999999999999999999988774 46565443
No 491
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.015 Score=56.79 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=68.1
Q ss_pred cceeccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcC-C-CeEEEEeecccchhhhHHhhhcccccccCC
Q 017581 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN-S-DTVVYVGCGERGNEMAEVLMDFPQLTMTLP 301 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~-~-d~vV~~~iGer~~ev~~~~~~f~~~~~~~~ 301 (369)
-..+.||.+++|.++- +.+|.-.=|||+.|+|||+|+.+++.++. + +.++|.- -|.+-+..++....
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID-tE~~l~p~r~~~l~-------- 109 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID-TEHALDPERAKQLG-------- 109 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe-CCCCCCHHHHHHHH--------
Confidence 5568999999999965 55888899999999999999998776543 3 3555554 44444444443321
Q ss_pred CCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCC--cEEEEecchHHHHHH
Q 017581 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY--NVSMMADSTSRWAEA 360 (369)
Q Consensus 302 ~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~--~VLli~Dsltr~A~A 360 (369)
.. .++ .++++..+ ...-+..+++++...+. ==|+++||++.+-.+
T Consensus 110 --~~--~~d--~l~v~~~~--------~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~ 156 (279)
T COG0468 110 --VD--LLD--NLLVSQPD--------TGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRA 156 (279)
T ss_pred --Hh--hhc--ceeEecCC--------CHHHHHHHHHHHHHhccCCCCEEEEecCcccchh
Confidence 01 022 22233332 23334445555544333 347899998765443
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.76 E-value=0.012 Score=54.01 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.9
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++..++|.|+||||||||+..|++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4778999999999999999999988763
No 493
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.76 E-value=0.016 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.0
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
--+++++|.+|+|||+|.+.|.+..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3479999999999999999998764
No 494
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.71 E-value=0.012 Score=61.50 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=44.8
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHhh
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVLM 291 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~~ 291 (369)
.+..+ |.+.+|+-++|+||||+|||||+++|.+--.+ +.|-+-+---+.-+-.+|.+
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 34444 89999999999999999999999999886554 66777776666666666653
No 495
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.71 E-value=0.08 Score=47.14 Aligned_cols=30 Identities=33% Similarity=0.293 Sum_probs=26.2
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+..+|..+.+.|.+|+||||++..+++...
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999887653
No 496
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.67 E-value=0.02 Score=50.39 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=19.1
Q ss_pred cccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 239 l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
...-+.+.-+.|.|++|+|||+|+..+....
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455667889999999999999999766543
No 497
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.66 E-value=0.077 Score=47.38 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+|.-+.+.|+||+||||+++.+++....
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4778899999999999999999887543
No 498
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.64 E-value=0.0058 Score=55.42 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=53.0
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcCC-C-eEEEEeecccc--hhhhHHhhhcccccccCCCCCcCCCcce-eEEEEe
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSNS-D-TVVYVGCGERG--NEMAEVLMDFPQLTMTLPDGREESVMKR-TTLVAN 317 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d-~vV~~~iGer~--~ev~~~~~~f~~~~~~~~~~~~~~~l~~-t~vv~~ 317 (369)
+.++.+.|.|++|+|||+|++.+++.... + .++|....+.. .....++... .....+.+ .-...++. +..-..
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~~~~~~ 95 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET-SLADELSE-ALGISIPSITLEKIS 95 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH-HHHCHCHH-HHHHHCCTSTTEEEE
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH-HHHHHHHH-HHhhhcccccchhhh
Confidence 35789999999999999999998887643 2 24444332222 2222221000 00000000 00000000 000000
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
. .........-..+.+++...+.++++++|++..++
T Consensus 96 ~-----~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 K-----DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp C-----TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred h-----cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 0 11223344445666777888888999999998777
No 499
>PLN03232 ABC transporter C family member; Provisional
Probab=95.63 E-value=0.0089 Score=70.42 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=33.6
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+++.+ +.+.+|++++|+|++|||||||++.|.+..++
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH 669 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 56777 99999999999999999999999999987765
No 500
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.60 E-value=0.049 Score=54.58 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=52.4
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC---CCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN---SDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t 318 (369)
.+++.+.|.|++|+|||++++.++++.. +++ ++|.-|-.... ...++..+.+. + ..... +
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~---l---~~~~~-~-------- 116 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT-RYAIFSEIARQ---L---FGHPP-P-------- 116 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC-HHHHHHHHHHH---h---cCCCC-C--------
Confidence 3456799999999999999998887542 123 56666554332 22333222000 0 11000 0
Q ss_pred CCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 319 ~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
... ......-..+.+++...++.++|++|++....
T Consensus 117 ~~~-----~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 117 SSG-----LSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred CCC-----CCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 000 00111222345666667888999999997665
Done!