Query 017581
Match_columns 369
No_of_seqs 169 out of 1285
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_A V-type sodium ATPase ca 100.0 5.6E-87 1.9E-91 689.7 34.0 344 20-369 9-353 (600)
2 3mfy_A V-type ATP synthase alp 100.0 3E-88 1E-92 696.9 18.0 345 20-369 3-348 (588)
3 3gqb_A V-type ATP synthase alp 100.0 1.1E-85 3.7E-90 677.7 32.1 340 21-369 3-342 (578)
4 3oaa_A ATP synthase subunit al 100.0 3E-69 1E-73 551.2 26.9 268 1-369 8-278 (513)
5 2r9v_A ATP synthase subunit al 100.0 8.9E-69 3.1E-73 549.1 26.3 269 1-369 20-291 (515)
6 2qe7_A ATP synthase subunit al 100.0 1.3E-68 4.4E-73 547.5 26.9 268 1-369 8-278 (502)
7 1fx0_A ATP synthase alpha chai 100.0 2E-68 6.9E-73 546.6 24.0 268 1-369 9-279 (507)
8 2ck3_A ATP synthase subunit al 100.0 4.7E-68 1.6E-72 544.2 25.8 268 1-369 8-286 (510)
9 3vr4_D V-type sodium ATPase su 100.0 2.8E-65 9.5E-70 518.3 26.3 251 19-369 10-272 (465)
10 3gqb_B V-type ATP synthase bet 100.0 4.3E-65 1.5E-69 516.8 26.2 252 18-369 5-275 (464)
11 2c61_A A-type ATP synthase non 100.0 4.3E-65 1.5E-69 519.1 20.6 253 17-369 10-273 (469)
12 2ck3_D ATP synthase subunit be 100.0 9.4E-62 3.2E-66 494.8 28.7 254 16-369 9-277 (482)
13 1fx0_B ATP synthase beta chain 100.0 1.2E-61 4E-66 495.8 25.8 250 20-369 19-290 (498)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 2.1E-55 7.2E-60 448.5 26.3 250 20-369 2-269 (473)
15 2dpy_A FLII, flagellum-specifi 100.0 1.8E-43 6E-48 359.1 23.6 250 18-368 7-270 (438)
16 3l0o_A Transcription terminati 100.0 3E-38 1E-42 314.6 11.7 134 219-369 148-286 (427)
17 2obl_A ESCN; ATPase, hydrolase 100.0 2E-35 6.8E-40 291.7 17.0 150 209-369 34-184 (347)
18 3ice_A Transcription terminati 100.0 7.1E-35 2.4E-39 290.7 13.1 133 220-369 145-285 (422)
19 3fvq_A Fe(3+) IONS import ATP- 98.6 1.8E-09 6E-14 107.0 -2.3 124 223-366 8-141 (359)
20 3tui_C Methionine import ATP-b 98.6 1.5E-09 5.1E-14 107.8 -2.9 70 208-277 11-88 (366)
21 3rlf_A Maltose/maltodextrin im 98.5 8.4E-09 2.9E-13 102.8 -0.6 108 224-344 8-122 (381)
22 1v43_A Sugar-binding transport 98.4 1.3E-08 4.5E-13 101.1 -1.6 54 223-277 15-71 (372)
23 1z47_A CYSA, putative ABC-tran 98.4 8.1E-09 2.8E-13 102.0 -3.7 50 224-273 19-69 (355)
24 4a74_A DNA repair and recombin 98.4 5E-07 1.7E-11 80.9 7.7 42 228-269 6-49 (231)
25 2it1_A 362AA long hypothetical 98.4 1.5E-08 5E-13 100.4 -2.8 45 232-276 15-62 (362)
26 2yyz_A Sugar ABC transporter, 98.4 1.5E-08 5E-13 100.3 -2.7 53 224-277 8-63 (359)
27 1g29_1 MALK, maltose transport 98.4 1.5E-08 5.2E-13 100.6 -3.2 40 233-272 16-56 (372)
28 2ehv_A Hypothetical protein PH 98.4 7.2E-07 2.5E-11 80.9 8.0 39 228-266 11-51 (251)
29 1oxx_K GLCV, glucose, ABC tran 98.3 2E-08 6.8E-13 99.0 -3.9 39 235-273 20-59 (353)
30 2w0m_A SSO2452; RECA, SSPF, un 98.2 3.8E-06 1.3E-10 74.8 9.4 61 228-288 4-68 (235)
31 1b0u_A Histidine permease; ABC 98.2 9.1E-08 3.1E-12 90.3 -1.5 56 221-277 8-66 (262)
32 3d31_A Sulfate/molybdate ABC t 98.2 3.8E-08 1.3E-12 96.9 -4.6 39 235-273 15-54 (348)
33 2pcj_A ABC transporter, lipopr 98.1 1.1E-07 3.9E-12 87.5 -2.9 45 233-277 17-64 (224)
34 2cvh_A DNA repair and recombin 98.1 4.2E-06 1.4E-10 74.4 6.3 49 229-278 2-52 (220)
35 3gd7_A Fusion complex of cysti 98.1 4E-07 1.4E-11 90.9 -0.5 59 219-277 19-80 (390)
36 3gfo_A Cobalt import ATP-bindi 98.0 3.2E-06 1.1E-10 80.5 4.7 54 220-273 8-62 (275)
37 1vpl_A ABC transporter, ATP-bi 98.0 4.7E-07 1.6E-11 85.3 -1.3 53 220-273 16-69 (256)
38 1n0w_A DNA repair protein RAD5 98.0 1.2E-05 4.3E-10 72.4 7.5 42 227-268 4-47 (243)
39 4g1u_C Hemin import ATP-bindin 97.9 6.7E-06 2.3E-10 77.7 5.2 59 219-278 11-72 (266)
40 1g6h_A High-affinity branched- 97.9 6E-06 2.1E-10 77.4 4.5 52 224-276 12-66 (257)
41 3tif_A Uncharacterized ABC tra 97.9 6.8E-06 2.3E-10 76.1 4.4 41 233-273 18-59 (235)
42 1pzn_A RAD51, DNA repair and r 97.9 1.7E-05 5.9E-10 77.6 7.2 44 226-269 110-155 (349)
43 3nh6_A ATP-binding cassette SU 97.8 8.6E-06 2.9E-10 78.7 4.1 59 220-278 54-115 (306)
44 2ff7_A Alpha-hemolysin translo 97.8 1.3E-05 4.5E-10 74.7 4.6 46 232-277 21-69 (247)
45 2ihy_A ABC transporter, ATP-bi 97.8 1.3E-05 4.4E-10 76.3 4.4 56 220-276 22-80 (279)
46 1ji0_A ABC transporter; ATP bi 97.8 1.3E-05 4.5E-10 74.3 4.4 44 233-276 19-65 (240)
47 2olj_A Amino acid ABC transpor 97.8 1.7E-05 5.8E-10 74.9 5.0 57 220-277 25-84 (263)
48 1mv5_A LMRA, multidrug resista 97.8 1.4E-05 4.8E-10 74.1 4.3 45 233-277 15-62 (243)
49 2ixe_A Antigen peptide transpo 97.8 1.7E-05 5.8E-10 75.0 4.9 45 233-277 32-79 (271)
50 1sgw_A Putative ABC transporte 97.8 1.4E-05 4.9E-10 73.2 4.1 47 224-272 15-62 (214)
51 2pze_A Cystic fibrosis transme 97.7 1.8E-05 6.1E-10 72.9 4.2 40 233-272 21-61 (229)
52 2cbz_A Multidrug resistance-as 97.7 1.4E-05 4.8E-10 74.0 3.5 39 233-271 18-57 (237)
53 2zu0_C Probable ATP-dependent 97.7 1.9E-05 6.4E-10 74.5 4.1 48 220-268 21-69 (267)
54 2yz2_A Putative ABC transporte 97.7 2.7E-05 9.4E-10 73.3 4.9 44 233-276 20-66 (266)
55 3hr8_A Protein RECA; alpha and 97.7 6.4E-05 2.2E-09 74.1 7.6 52 227-278 40-96 (356)
56 2nq2_C Hypothetical ABC transp 97.7 2.3E-05 7.9E-10 73.4 4.1 41 232-272 17-58 (253)
57 1v5w_A DMC1, meiotic recombina 97.7 0.00013 4.5E-09 70.9 9.6 43 226-268 101-145 (343)
58 2ghi_A Transport protein; mult 97.6 3.1E-05 1.1E-09 72.7 4.6 44 234-277 34-79 (260)
59 2z43_A DNA repair and recombin 97.6 0.00011 3.9E-09 70.6 8.0 45 225-269 85-131 (324)
60 3io5_A Recombination and repai 97.6 9.1E-05 3.1E-09 72.3 6.9 107 228-358 6-124 (333)
61 1z6g_A Guanylate kinase; struc 97.6 3.1E-05 1.1E-09 70.4 3.2 36 234-269 11-47 (218)
62 3lda_A DNA repair protein RAD5 97.5 0.00017 5.6E-09 72.2 8.2 43 224-266 155-199 (400)
63 2qi9_C Vitamin B12 import ATP- 97.5 4E-05 1.4E-09 71.7 3.3 43 234-276 14-58 (249)
64 2zts_A Putative uncharacterize 97.5 8.2E-05 2.8E-09 67.0 5.3 62 229-290 12-78 (251)
65 2d2e_A SUFC protein; ABC-ATPas 97.5 5.1E-05 1.7E-09 70.7 4.0 45 233-277 16-65 (250)
66 2zr9_A Protein RECA, recombina 97.5 0.00019 6.3E-09 70.4 8.1 53 227-279 40-97 (349)
67 1cr0_A DNA primase/helicase; R 97.5 3.5E-05 1.2E-09 72.6 2.7 42 228-269 16-59 (296)
68 2pjz_A Hypothetical protein ST 97.5 6.5E-05 2.2E-09 70.8 4.2 39 233-273 18-57 (263)
69 2bbs_A Cystic fibrosis transme 97.5 4.7E-05 1.6E-09 72.9 3.0 39 233-271 51-90 (290)
70 1zp6_A Hypothetical protein AT 97.4 8.6E-05 3E-09 64.7 4.1 38 239-276 3-40 (191)
71 2dr3_A UPF0273 protein PH0284; 97.4 0.00011 3.8E-09 66.1 4.5 63 228-290 4-70 (247)
72 1znw_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 66.6 3.5 30 240-269 15-44 (207)
73 2i1q_A DNA repair and recombin 97.4 0.00028 9.5E-09 67.4 7.3 43 226-268 77-121 (322)
74 1htw_A HI0065; nucleotide-bind 97.4 7E-05 2.4E-09 65.3 2.8 37 233-269 20-57 (158)
75 2onk_A Molybdate/tungstate ABC 97.3 0.00016 5.6E-09 67.1 4.8 36 236-272 15-51 (240)
76 2v9p_A Replication protein E1; 97.3 0.0001 3.6E-09 71.1 3.3 41 233-274 113-154 (305)
77 1tf7_A KAIC; homohexamer, hexa 97.3 0.00012 4.1E-09 75.1 3.8 50 220-270 13-66 (525)
78 1u94_A RECA protein, recombina 97.3 0.00056 1.9E-08 67.2 8.3 52 227-278 42-98 (356)
79 3qf4_B Uncharacterized ABC tra 97.3 0.00016 5.4E-09 75.6 4.5 56 223-278 358-416 (598)
80 2jeo_A Uridine-cytidine kinase 97.3 0.00013 4.4E-09 67.1 3.3 37 233-269 12-49 (245)
81 3b5x_A Lipid A export ATP-bind 97.2 0.00021 7.1E-09 74.3 4.7 55 224-278 346-404 (582)
82 3tr0_A Guanylate kinase, GMP k 97.2 0.00019 6.4E-09 63.1 3.6 29 241-269 3-31 (205)
83 3b60_A Lipid A export ATP-bind 97.2 0.00023 7.8E-09 74.0 4.7 55 224-278 346-404 (582)
84 1yqt_A RNAse L inhibitor; ATP- 97.2 0.0003 1E-08 72.7 5.2 51 222-272 24-74 (538)
85 4a82_A Cystic fibrosis transme 97.1 0.00021 7.2E-09 74.3 3.5 55 224-278 344-402 (578)
86 1xp8_A RECA protein, recombina 97.1 0.0009 3.1E-08 66.0 7.8 55 226-280 52-111 (366)
87 2yl4_A ATP-binding cassette SU 97.1 0.00033 1.1E-08 72.9 4.5 45 233-277 357-404 (595)
88 4eun_A Thermoresistant glucoki 97.0 0.00032 1.1E-08 62.2 3.5 41 229-269 13-53 (200)
89 2j41_A Guanylate kinase; GMP, 97.0 0.00043 1.5E-08 60.7 4.2 32 240-271 1-32 (207)
90 3qf4_A ABC transporter, ATP-bi 97.0 0.00033 1.1E-08 73.0 3.9 56 223-278 345-404 (587)
91 4gp7_A Metallophosphoesterase; 97.0 0.00035 1.2E-08 60.8 3.3 25 240-264 4-28 (171)
92 3j16_B RLI1P; ribosome recycli 97.0 0.00052 1.8E-08 72.1 5.1 48 225-272 83-130 (608)
93 3c8u_A Fructokinase; YP_612366 97.0 0.00038 1.3E-08 62.2 3.3 29 242-270 19-47 (208)
94 4f4c_A Multidrug resistance pr 97.0 0.00042 1.4E-08 78.8 4.4 59 232-290 1091-1152(1321)
95 1nlf_A Regulatory protein REPA 96.9 0.0003 1E-08 65.7 2.5 46 224-269 8-54 (279)
96 3lnc_A Guanylate kinase, GMP k 96.9 0.00028 9.6E-09 63.9 2.0 30 240-269 22-52 (231)
97 3vaa_A Shikimate kinase, SK; s 96.9 0.00064 2.2E-08 60.2 4.1 36 236-271 15-51 (199)
98 3b85_A Phosphate starvation-in 96.9 0.00033 1.1E-08 63.6 2.2 34 234-271 14-47 (208)
99 3bk7_A ABC transporter ATP-bin 96.8 0.00083 2.8E-08 70.5 5.2 48 224-271 96-143 (607)
100 3nwj_A ATSK2; P loop, shikimat 96.8 0.00032 1.1E-08 65.7 1.5 52 219-270 17-73 (250)
101 1lvg_A Guanylate kinase, GMP k 96.8 0.00056 1.9E-08 61.0 3.0 26 243-268 2-27 (198)
102 1kgd_A CASK, peripheral plasma 96.8 0.0007 2.4E-08 59.1 3.5 26 244-269 4-29 (180)
103 2x8a_A Nuclear valosin-contain 96.8 0.00057 2E-08 64.3 3.1 41 235-277 35-76 (274)
104 2qag_B Septin-6, protein NEDD5 96.8 0.0016 5.6E-08 65.6 6.6 34 236-269 30-66 (427)
105 3ec2_A DNA replication protein 96.8 0.00072 2.5E-08 58.6 3.5 30 240-269 33-62 (180)
106 3asz_A Uridine kinase; cytidin 96.8 0.00057 2E-08 60.6 2.7 30 241-270 2-31 (211)
107 1u0l_A Probable GTPase ENGC; p 96.7 0.00053 1.8E-08 65.3 2.3 38 235-272 159-196 (301)
108 3euj_A Chromosome partition pr 96.7 0.00083 2.8E-08 68.8 3.9 38 233-271 17-55 (483)
109 2eyu_A Twitching motility prot 96.7 0.00068 2.3E-08 63.6 2.8 42 235-277 16-60 (261)
110 3cmw_A Protein RECA, recombina 96.7 0.0017 5.9E-08 75.2 6.4 110 225-358 11-125 (1706)
111 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00068 2.3E-08 68.9 2.8 32 240-271 133-164 (460)
112 1lw7_A Transcriptional regulat 96.6 0.00077 2.6E-08 65.7 3.0 33 240-272 163-197 (365)
113 2qby_A CDC6 homolog 1, cell di 96.6 0.0026 8.9E-08 60.5 6.5 94 243-358 43-141 (386)
114 3ozx_A RNAse L inhibitor; ATP 96.6 0.00096 3.3E-08 69.0 3.6 32 240-271 289-320 (538)
115 1s96_A Guanylate kinase, GMP k 96.6 0.0012 4.2E-08 60.2 3.9 31 241-271 12-42 (219)
116 2gza_A Type IV secretion syste 96.6 0.00072 2.5E-08 66.3 2.4 41 236-276 165-208 (361)
117 1pui_A ENGB, probable GTP-bind 96.6 0.00043 1.5E-08 60.7 0.6 35 234-269 16-50 (210)
118 3uie_A Adenylyl-sulfate kinase 96.6 0.0009 3.1E-08 59.2 2.5 37 233-269 12-49 (200)
119 2iw3_A Elongation factor 3A; a 96.5 0.00071 2.4E-08 74.7 2.2 40 233-272 686-726 (986)
120 1ixz_A ATP-dependent metallopr 96.5 0.0018 6.2E-08 59.1 4.5 40 235-276 40-80 (254)
121 1fnn_A CDC6P, cell division co 96.5 0.0092 3.1E-07 57.0 9.7 39 243-281 40-83 (389)
122 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0013 4.4E-08 68.0 3.8 36 236-271 302-338 (538)
123 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.00068 2.3E-08 65.7 1.6 43 235-277 160-205 (330)
124 3b9q_A Chloroplast SRP recepto 96.5 0.0012 4E-08 63.4 3.1 43 237-279 91-136 (302)
125 3cmu_A Protein RECA, recombina 96.5 0.0031 1E-07 74.1 7.1 56 225-280 1404-1464(2050)
126 3aez_A Pantothenate kinase; tr 96.5 0.0013 4.5E-08 63.3 3.4 30 241-270 86-115 (312)
127 2iw3_A Elongation factor 3A; a 96.5 0.0014 4.8E-08 72.4 4.0 36 232-267 447-483 (986)
128 2i3b_A HCR-ntpase, human cance 96.5 0.0013 4.3E-08 58.9 3.1 25 245-269 1-25 (189)
129 1t9h_A YLOQ, probable GTPase E 96.5 0.00044 1.5E-08 66.8 0.0 36 236-271 164-199 (307)
130 3a00_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 57.7 3.0 25 245-269 1-25 (186)
131 3bk7_A ABC transporter ATP-bin 96.5 0.0017 5.8E-08 68.2 4.3 36 236-271 372-408 (607)
132 3g5u_A MCG1178, multidrug resi 96.4 0.0015 5.2E-08 74.0 4.0 46 233-278 403-451 (1284)
133 1w5s_A Origin recognition comp 96.4 0.006 2E-07 58.9 7.7 93 244-358 49-151 (412)
134 2v1u_A Cell division control p 96.4 0.0035 1.2E-07 59.7 5.9 27 243-269 42-68 (387)
135 2yv5_A YJEQ protein; hydrolase 96.4 0.0013 4.6E-08 62.7 2.9 36 235-271 155-190 (302)
136 1ye8_A Protein THEP1, hypothet 96.4 0.0016 5.6E-08 57.4 3.3 25 246-270 1-25 (178)
137 1rj9_A FTSY, signal recognitio 96.3 0.0021 7.2E-08 61.7 3.9 37 243-279 100-138 (304)
138 1kag_A SKI, shikimate kinase I 96.3 0.0022 7.7E-08 54.6 3.7 28 244-271 3-30 (173)
139 3ney_A 55 kDa erythrocyte memb 96.3 0.0022 7.5E-08 58.1 3.7 30 240-269 14-43 (197)
140 2kjq_A DNAA-related protein; s 96.3 0.0014 4.8E-08 56.1 2.3 26 244-269 35-60 (149)
141 1iy2_A ATP-dependent metallopr 96.3 0.0027 9.4E-08 59.0 4.5 41 234-276 63-104 (278)
142 3sop_A Neuronal-specific septi 96.3 0.0035 1.2E-07 59.0 5.2 26 247-272 4-29 (270)
143 3bh0_A DNAB-like replicative h 96.3 0.0018 6.1E-08 62.1 3.0 59 227-285 49-110 (315)
144 3ux8_A Excinuclease ABC, A sub 96.3 0.0011 3.7E-08 70.0 1.6 34 233-266 335-369 (670)
145 3cmu_A Protein RECA, recombina 96.3 0.0062 2.1E-07 71.6 7.8 111 224-358 10-125 (2050)
146 1q57_A DNA primase/helicase; d 96.2 0.0058 2E-07 62.0 6.7 60 227-286 222-286 (503)
147 3ux8_A Excinuclease ABC, A sub 96.2 0.0017 5.8E-08 68.5 2.8 30 233-262 31-61 (670)
148 3ozx_A RNAse L inhibitor; ATP 96.2 0.0023 7.9E-08 66.2 3.7 34 239-272 19-52 (538)
149 3g5u_A MCG1178, multidrug resi 96.2 0.0022 7.5E-08 72.7 3.8 46 233-278 1046-1094(1284)
150 2qm8_A GTPase/ATPase; G protei 96.2 0.0017 5.7E-08 63.1 2.5 37 233-269 42-79 (337)
151 1tq4_A IIGP1, interferon-induc 96.2 0.0011 3.9E-08 66.5 1.2 38 234-271 37-95 (413)
152 3tau_A Guanylate kinase, GMP k 96.2 0.0029 9.9E-08 56.5 3.8 28 243-270 6-33 (208)
153 2qt1_A Nicotinamide riboside k 96.2 0.0021 7.3E-08 56.8 2.8 30 240-269 16-45 (207)
154 1tf7_A KAIC; homohexamer, hexa 96.2 0.0017 5.9E-08 66.5 2.5 43 227-269 261-305 (525)
155 1knq_A Gluconate kinase; ALFA/ 96.1 0.0028 9.6E-08 54.3 3.2 27 243-269 6-32 (175)
156 3j16_B RLI1P; ribosome recycli 96.1 0.0036 1.2E-07 65.7 4.6 39 233-271 360-404 (608)
157 4f4c_A Multidrug resistance pr 96.1 0.0031 1E-07 71.7 4.2 47 233-279 431-480 (1321)
158 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0034 1.1E-07 61.3 3.9 44 225-268 102-146 (331)
159 2r6a_A DNAB helicase, replicat 96.1 0.0025 8.5E-08 64.1 3.0 43 227-269 184-227 (454)
160 2og2_A Putative signal recogni 96.1 0.0027 9.3E-08 62.5 3.1 40 240-279 152-193 (359)
161 2vp4_A Deoxynucleoside kinase; 96.0 0.0033 1.1E-07 57.0 3.3 29 240-268 15-43 (230)
162 1sq5_A Pantothenate kinase; P- 96.0 0.0029 9.8E-08 60.4 2.9 30 241-270 76-105 (308)
163 2bdt_A BH3686; alpha-beta prot 96.0 0.0029 9.8E-08 55.1 2.7 24 245-268 2-25 (189)
164 2yhs_A FTSY, cell division pro 96.0 0.0029 9.8E-08 65.1 3.0 39 240-278 288-328 (503)
165 3cmw_A Protein RECA, recombina 96.0 0.0097 3.3E-07 69.1 7.5 56 226-281 361-421 (1706)
166 1y63_A LMAJ004144AAA protein; 96.0 0.0045 1.5E-07 54.0 3.8 29 240-268 5-33 (184)
167 2rcn_A Probable GTPase ENGC; Y 95.9 0.0027 9.3E-08 62.5 2.4 35 236-270 206-240 (358)
168 1cke_A CK, MSSA, protein (cyti 95.9 0.0046 1.6E-07 55.0 3.6 24 245-268 5-28 (227)
169 2bbw_A Adenylate kinase 4, AK4 95.9 0.0036 1.2E-07 57.1 2.9 23 244-266 26-48 (246)
170 4e22_A Cytidylate kinase; P-lo 95.8 0.0048 1.6E-07 57.0 3.4 25 243-267 25-49 (252)
171 4b4t_J 26S protease regulatory 95.8 0.0097 3.3E-07 59.6 5.6 91 248-351 185-292 (405)
172 2oap_1 GSPE-2, type II secreti 95.7 0.0037 1.3E-07 64.3 2.6 39 234-272 248-287 (511)
173 1svm_A Large T antigen; AAA+ f 95.7 0.0037 1.3E-07 61.9 2.4 38 234-271 157-195 (377)
174 3e70_C DPA, signal recognition 95.7 0.0053 1.8E-07 59.6 3.4 40 241-280 125-166 (328)
175 1rz3_A Hypothetical protein rb 95.7 0.0054 1.8E-07 54.4 3.0 29 241-269 18-46 (201)
176 3kta_A Chromosome segregation 95.6 0.0056 1.9E-07 52.7 3.0 36 232-268 11-49 (182)
177 2qor_A Guanylate kinase; phosp 95.6 0.0066 2.3E-07 53.7 3.4 28 242-269 9-36 (204)
178 1zu4_A FTSY; GTPase, signal re 95.5 0.046 1.6E-06 52.7 9.2 42 240-281 100-143 (320)
179 2q6t_A DNAB replication FORK h 95.4 0.0053 1.8E-07 61.5 2.3 43 227-269 181-224 (444)
180 2ewv_A Twitching motility prot 95.4 0.0074 2.5E-07 59.3 3.3 30 241-270 132-161 (372)
181 2pez_A Bifunctional 3'-phospho 95.4 0.0083 2.8E-07 51.7 3.3 26 244-269 4-29 (179)
182 2dhr_A FTSH; AAA+ protein, hex 95.4 0.017 6E-07 59.1 6.2 35 240-276 61-95 (499)
183 4a1f_A DNAB helicase, replicat 95.4 0.006 2.1E-07 59.6 2.4 43 227-269 27-70 (338)
184 3cf0_A Transitional endoplasmi 95.4 0.013 4.4E-07 55.4 4.6 31 242-272 46-76 (301)
185 2gj8_A MNME, tRNA modification 95.3 0.0072 2.5E-07 51.8 2.4 27 243-269 2-28 (172)
186 3cm0_A Adenylate kinase; ATP-b 95.3 0.0083 2.8E-07 51.6 2.8 27 243-269 2-28 (186)
187 1c9k_A COBU, adenosylcobinamid 95.2 0.016 5.4E-07 51.8 4.5 43 248-292 2-45 (180)
188 1qhx_A CPT, protein (chloramph 95.2 0.019 6.5E-07 49.0 4.9 29 245-273 3-31 (178)
189 1in4_A RUVB, holliday junction 95.2 0.0065 2.2E-07 58.3 2.1 39 234-272 32-78 (334)
190 1lv7_A FTSH; alpha/beta domain 95.2 0.014 4.7E-07 53.3 4.1 26 248-273 48-73 (257)
191 2yvu_A Probable adenylyl-sulfa 95.2 0.012 4.1E-07 51.0 3.5 34 236-269 4-37 (186)
192 3jvv_A Twitching mobility prot 95.1 0.0095 3.2E-07 58.4 3.0 31 241-271 119-149 (356)
193 3bos_A Putative DNA replicatio 95.1 0.0079 2.7E-07 53.1 2.2 47 235-281 42-90 (242)
194 3iij_A Coilin-interacting nucl 95.1 0.014 4.8E-07 50.2 3.7 28 243-270 9-36 (180)
195 1oix_A RAS-related protein RAB 95.1 0.011 3.8E-07 51.4 3.0 23 247-269 31-53 (191)
196 3bgw_A DNAB-like replicative h 95.1 0.0084 2.9E-07 60.4 2.4 60 227-286 178-240 (444)
197 3kb2_A SPBC2 prophage-derived 95.0 0.012 4.1E-07 49.6 3.1 23 247-269 3-25 (173)
198 2f9l_A RAB11B, member RAS onco 95.0 0.012 4E-07 51.3 3.0 23 247-269 7-29 (199)
199 2ius_A DNA translocase FTSK; n 95.0 0.043 1.5E-06 56.5 7.6 46 240-285 162-211 (512)
200 3h4m_A Proteasome-activating n 94.9 0.021 7.1E-07 52.6 4.6 33 242-274 48-80 (285)
201 1kht_A Adenylate kinase; phosp 94.9 0.015 5.1E-07 49.9 3.4 26 244-269 2-27 (192)
202 4aby_A DNA repair protein RECN 94.9 0.0037 1.3E-07 61.2 -0.5 36 231-267 46-82 (415)
203 3trf_A Shikimate kinase, SK; a 94.9 0.019 6.5E-07 49.4 4.0 26 245-270 5-30 (185)
204 1odf_A YGR205W, hypothetical 3 94.9 0.014 4.8E-07 55.5 3.4 29 242-270 28-56 (290)
205 1jjv_A Dephospho-COA kinase; P 94.8 0.014 4.9E-07 51.3 3.0 22 247-268 4-25 (206)
206 2if2_A Dephospho-COA kinase; a 94.8 0.013 4.3E-07 51.4 2.6 21 247-267 3-23 (204)
207 1p9r_A General secretion pathw 94.8 0.021 7.1E-07 57.2 4.5 43 234-277 157-201 (418)
208 2zej_A Dardarin, leucine-rich 94.8 0.013 4.5E-07 50.4 2.7 22 247-268 4-25 (184)
209 2p5t_B PEZT; postsegregational 94.8 0.016 5.4E-07 53.3 3.3 36 240-275 27-62 (253)
210 1zuh_A Shikimate kinase; alpha 94.7 0.021 7.3E-07 48.5 3.9 26 245-270 7-32 (168)
211 1z6t_A APAF-1, apoptotic prote 94.7 0.02 6.8E-07 58.5 4.2 39 244-282 146-190 (591)
212 1jbk_A CLPB protein; beta barr 94.7 0.021 7.1E-07 48.0 3.7 27 243-269 41-67 (195)
213 2wji_A Ferrous iron transport 94.7 0.016 5.4E-07 49.0 2.9 23 247-269 5-27 (165)
214 2f1r_A Molybdopterin-guanine d 94.7 0.0076 2.6E-07 53.0 0.8 26 246-271 3-28 (171)
215 1njg_A DNA polymerase III subu 94.6 0.16 5.4E-06 44.0 9.4 23 247-269 47-69 (250)
216 2wwf_A Thymidilate kinase, put 94.6 0.018 6.2E-07 50.5 3.2 27 242-268 7-33 (212)
217 2a5y_B CED-4; apoptosis; HET: 94.6 0.058 2E-06 55.2 7.4 38 245-282 152-195 (549)
218 1m7g_A Adenylylsulfate kinase; 94.6 0.019 6.4E-07 51.0 3.2 31 240-270 20-50 (211)
219 2jaq_A Deoxyguanosine kinase; 94.6 0.02 6.8E-07 49.6 3.3 24 247-270 2-25 (205)
220 3m6a_A ATP-dependent protease 94.6 0.02 6.8E-07 59.0 3.8 29 244-272 107-135 (543)
221 4b4t_L 26S protease subunit RP 94.5 0.016 5.6E-07 58.5 2.9 30 248-277 218-247 (437)
222 2v54_A DTMP kinase, thymidylat 94.5 0.023 8E-07 49.4 3.6 26 244-269 3-28 (204)
223 3b9p_A CG5977-PA, isoform A; A 94.5 0.031 1E-06 51.9 4.5 28 244-271 53-80 (297)
224 3dl0_A Adenylate kinase; phosp 94.4 0.029 9.8E-07 49.7 4.1 24 247-270 2-25 (216)
225 1nn5_A Similar to deoxythymidy 94.4 0.021 7.1E-07 50.1 3.1 27 242-268 6-32 (215)
226 2vli_A Antibiotic resistance p 94.4 0.024 8.3E-07 48.4 3.5 30 243-272 3-32 (183)
227 3fb4_A Adenylate kinase; psych 94.4 0.027 9.1E-07 49.8 3.8 24 247-270 2-25 (216)
228 3k1j_A LON protease, ATP-depen 94.4 0.013 4.3E-07 61.1 1.9 39 233-271 47-86 (604)
229 3bs4_A Uncharacterized protein 94.3 0.052 1.8E-06 51.0 5.8 65 229-293 3-71 (260)
230 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.039 1.3E-06 49.8 4.7 28 245-272 39-66 (262)
231 2plr_A DTMP kinase, probable t 94.3 0.024 8.3E-07 49.3 3.3 27 244-270 3-29 (213)
232 1ypw_A Transitional endoplasmi 94.3 0.031 1.1E-06 60.4 4.7 34 241-274 234-267 (806)
233 2wjg_A FEOB, ferrous iron tran 94.2 0.024 8.3E-07 48.2 3.1 22 247-268 9-30 (188)
234 3t61_A Gluconokinase; PSI-biol 94.2 0.031 1.1E-06 49.0 3.8 25 246-270 19-43 (202)
235 4b4t_M 26S protease regulatory 94.2 0.026 8.9E-07 56.9 3.7 26 248-273 218-243 (434)
236 4eaq_A DTMP kinase, thymidylat 94.2 0.043 1.5E-06 50.0 4.8 31 241-271 22-52 (229)
237 2p65_A Hypothetical protein PF 94.2 0.024 8.1E-07 47.8 2.8 27 243-269 41-67 (187)
238 2rhm_A Putative kinase; P-loop 94.2 0.03 1E-06 48.2 3.5 28 243-270 3-30 (193)
239 1sxj_E Activator 1 40 kDa subu 94.1 0.17 5.9E-06 47.8 9.1 28 241-268 32-59 (354)
240 3pvs_A Replication-associated 94.1 0.045 1.5E-06 55.1 5.2 46 246-291 51-96 (447)
241 2c95_A Adenylate kinase 1; tra 94.1 0.027 9.2E-07 48.6 3.1 28 243-270 7-34 (196)
242 1via_A Shikimate kinase; struc 94.1 0.026 8.8E-07 48.3 2.9 24 247-270 6-29 (175)
243 4b4t_K 26S protease regulatory 94.0 0.029 1E-06 56.4 3.6 29 248-276 209-237 (428)
244 1q3t_A Cytidylate kinase; nucl 94.0 0.031 1.1E-06 50.5 3.6 26 243-268 14-39 (236)
245 3r20_A Cytidylate kinase; stru 94.0 0.028 9.4E-07 52.0 3.2 25 246-270 10-34 (233)
246 3tqc_A Pantothenate kinase; bi 94.0 0.025 8.5E-07 54.8 3.0 24 247-270 94-117 (321)
247 3cr8_A Sulfate adenylyltranfer 94.0 0.016 5.4E-07 60.2 1.6 31 241-271 365-395 (552)
248 2iyv_A Shikimate kinase, SK; t 94.0 0.035 1.2E-06 47.7 3.6 25 246-270 3-27 (184)
249 3t15_A Ribulose bisphosphate c 94.0 0.029 9.8E-07 52.9 3.3 29 248-276 39-67 (293)
250 1zd8_A GTP:AMP phosphotransfer 93.9 0.032 1.1E-06 50.0 3.4 29 242-270 4-32 (227)
251 2dyk_A GTP-binding protein; GT 93.9 0.033 1.1E-06 45.8 3.2 23 247-269 3-25 (161)
252 1gvn_B Zeta; postsegregational 93.9 0.045 1.5E-06 51.6 4.5 33 241-273 29-61 (287)
253 1z2a_A RAS-related protein RAB 93.9 0.032 1.1E-06 46.1 3.1 23 247-269 7-29 (168)
254 3lw7_A Adenylate kinase relate 93.9 0.038 1.3E-06 46.0 3.6 19 247-265 3-21 (179)
255 4b4t_H 26S protease regulatory 93.9 0.026 8.9E-07 57.5 2.9 32 246-277 244-275 (467)
256 2qag_C Septin-7; cell cycle, c 93.9 0.027 9.1E-07 56.5 2.9 32 233-270 24-56 (418)
257 1tev_A UMP-CMP kinase; ploop, 93.8 0.033 1.1E-06 47.7 3.1 27 244-270 2-28 (196)
258 1aky_A Adenylate kinase; ATP:A 93.8 0.04 1.4E-06 49.0 3.8 27 244-270 3-29 (220)
259 1uf9_A TT1252 protein; P-loop, 93.8 0.031 1.1E-06 48.4 3.0 24 245-268 8-31 (203)
260 1kao_A RAP2A; GTP-binding prot 93.8 0.036 1.2E-06 45.6 3.2 23 247-269 5-27 (167)
261 1vt4_I APAF-1 related killer D 93.8 0.14 4.7E-06 57.3 8.5 39 245-283 150-193 (1221)
262 2nzj_A GTP-binding protein REM 93.8 0.033 1.1E-06 46.5 2.9 22 247-268 6-27 (175)
263 2ga8_A Hypothetical 39.9 kDa p 93.7 0.023 8E-07 56.0 2.2 33 236-268 12-47 (359)
264 2cdn_A Adenylate kinase; phosp 93.7 0.05 1.7E-06 47.6 4.2 27 244-270 19-45 (201)
265 1qhl_A Protein (cell division 93.7 0.0064 2.2E-07 56.1 -1.8 26 246-271 28-53 (227)
266 1m2o_B GTP-binding protein SAR 93.7 0.031 1.1E-06 48.4 2.8 34 234-268 12-46 (190)
267 1nks_A Adenylate kinase; therm 93.7 0.031 1E-06 47.8 2.7 23 247-269 3-25 (194)
268 1l8q_A Chromosomal replication 93.7 0.047 1.6E-06 51.5 4.2 37 244-280 36-74 (324)
269 2ze6_A Isopentenyl transferase 93.7 0.041 1.4E-06 50.8 3.6 25 247-271 3-27 (253)
270 1ni3_A YCHF GTPase, YCHF GTP-b 93.7 0.033 1.1E-06 55.4 3.1 27 241-267 16-42 (392)
271 1z08_A RAS-related protein RAB 93.7 0.038 1.3E-06 45.9 3.1 22 247-268 8-29 (170)
272 1u8z_A RAS-related protein RAL 93.7 0.039 1.3E-06 45.3 3.2 23 247-269 6-28 (168)
273 1ly1_A Polynucleotide kinase; 93.6 0.038 1.3E-06 46.7 3.2 21 247-267 4-24 (181)
274 1ofh_A ATP-dependent HSL prote 93.6 0.053 1.8E-06 50.0 4.3 32 244-275 49-80 (310)
275 1ek0_A Protein (GTP-binding pr 93.6 0.04 1.4E-06 45.5 3.2 23 247-269 5-27 (170)
276 3thx_A DNA mismatch repair pro 93.6 0.043 1.5E-06 60.4 4.2 31 235-265 651-682 (934)
277 2ce2_X GTPase HRAS; signaling 93.6 0.032 1.1E-06 45.6 2.6 23 247-269 5-27 (166)
278 2bwj_A Adenylate kinase 5; pho 93.6 0.03 1E-06 48.4 2.5 29 242-270 9-37 (199)
279 1d2n_A N-ethylmaleimide-sensit 93.6 0.05 1.7E-06 50.0 4.0 34 243-276 62-95 (272)
280 2erx_A GTP-binding protein DI- 93.6 0.041 1.4E-06 45.5 3.1 22 247-268 5-26 (172)
281 1wb9_A DNA mismatch repair pro 93.5 0.044 1.5E-06 59.3 4.1 34 234-268 596-630 (800)
282 2w58_A DNAI, primosome compone 93.5 0.043 1.5E-06 47.9 3.4 24 246-269 55-78 (202)
283 1jr3_A DNA polymerase III subu 93.5 0.33 1.1E-05 45.9 9.9 23 247-269 40-62 (373)
284 3q85_A GTP-binding protein REM 93.5 0.038 1.3E-06 46.0 2.9 22 247-268 4-25 (169)
285 1r8s_A ADP-ribosylation factor 93.5 0.043 1.5E-06 45.3 3.2 22 247-268 2-23 (164)
286 3eie_A Vacuolar protein sortin 93.5 0.043 1.5E-06 52.1 3.6 28 245-272 51-78 (322)
287 1c1y_A RAS-related protein RAP 93.5 0.043 1.5E-06 45.3 3.2 23 247-269 5-27 (167)
288 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.08 2.7E-06 50.6 5.5 25 245-269 45-69 (322)
289 2z0h_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 47.4 3.1 23 247-269 2-24 (197)
290 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.045 1.5E-06 45.8 3.2 23 247-269 9-31 (177)
291 1ukz_A Uridylate kinase; trans 93.4 0.056 1.9E-06 47.2 3.9 27 244-270 14-40 (203)
292 3n70_A Transport activator; si 93.4 0.045 1.5E-06 45.8 3.2 27 243-269 22-48 (145)
293 1z0j_A RAB-22, RAS-related pro 93.4 0.046 1.6E-06 45.2 3.2 23 247-269 8-30 (170)
294 2r62_A Cell division protease 93.4 0.035 1.2E-06 50.7 2.7 23 248-270 47-69 (268)
295 4b4t_I 26S protease regulatory 93.4 0.045 1.5E-06 55.2 3.7 29 248-276 219-247 (437)
296 2ged_A SR-beta, signal recogni 93.4 0.046 1.6E-06 46.8 3.2 25 245-269 48-72 (193)
297 3ihw_A Centg3; RAS, centaurin, 93.3 0.046 1.6E-06 47.1 3.2 23 247-269 22-44 (184)
298 2pt5_A Shikimate kinase, SK; a 93.3 0.057 2E-06 45.4 3.7 24 247-270 2-25 (168)
299 1r2q_A RAS-related protein RAB 93.3 0.048 1.6E-06 45.0 3.2 22 247-268 8-29 (170)
300 3bc1_A RAS-related protein RAB 93.3 0.047 1.6E-06 46.2 3.2 23 247-269 13-35 (195)
301 1ky3_A GTP-binding protein YPT 93.3 0.048 1.7E-06 45.6 3.2 23 247-269 10-32 (182)
302 3thx_B DNA mismatch repair pro 93.3 0.032 1.1E-06 61.3 2.6 34 233-266 660-694 (918)
303 1ega_A Protein (GTP-binding pr 93.3 0.032 1.1E-06 52.9 2.4 26 244-269 7-32 (301)
304 1sxj_C Activator 1 40 kDa subu 93.2 0.026 8.9E-07 53.8 1.6 36 234-269 32-70 (340)
305 2hxs_A RAB-26, RAS-related pro 93.2 0.052 1.8E-06 45.4 3.3 22 247-268 8-29 (178)
306 1g16_A RAS-related protein SEC 93.2 0.041 1.4E-06 45.5 2.6 23 247-269 5-27 (170)
307 3szr_A Interferon-induced GTP- 93.2 0.024 8.1E-07 59.3 1.4 22 248-269 48-69 (608)
308 1vma_A Cell division protein F 93.2 0.05 1.7E-06 52.2 3.5 41 240-280 99-141 (306)
309 1udx_A The GTP-binding protein 93.2 0.027 9.4E-07 56.4 1.7 32 237-268 149-180 (416)
310 3q72_A GTP-binding protein RAD 93.2 0.032 1.1E-06 46.2 1.9 22 247-268 4-25 (166)
311 3be4_A Adenylate kinase; malar 93.2 0.048 1.6E-06 48.7 3.1 27 244-270 4-30 (217)
312 3lxx_A GTPase IMAP family memb 93.2 0.048 1.6E-06 49.2 3.2 23 247-269 31-53 (239)
313 1zak_A Adenylate kinase; ATP:A 93.2 0.041 1.4E-06 49.0 2.7 27 244-270 4-30 (222)
314 1e6c_A Shikimate kinase; phosp 93.1 0.046 1.6E-06 46.2 2.9 25 246-270 3-27 (173)
315 3u61_B DNA polymerase accessor 93.1 0.22 7.5E-06 46.7 7.8 46 247-292 49-95 (324)
316 4dsu_A GTPase KRAS, isoform 2B 93.1 0.053 1.8E-06 45.8 3.2 23 247-269 6-28 (189)
317 3sfz_A APAF-1, apoptotic pepti 93.1 0.079 2.7E-06 58.0 5.4 37 246-282 148-190 (1249)
318 2chg_A Replication factor C sm 93.1 0.054 1.8E-06 46.6 3.3 24 246-269 39-62 (226)
319 1upt_A ARL1, ADP-ribosylation 93.1 0.054 1.9E-06 44.9 3.2 24 245-268 7-30 (171)
320 2ce7_A Cell division protein F 93.1 0.063 2.2E-06 54.7 4.2 30 241-272 47-76 (476)
321 2fn4_A P23, RAS-related protei 93.1 0.044 1.5E-06 45.8 2.6 23 247-269 11-33 (181)
322 1ak2_A Adenylate kinase isoenz 93.1 0.06 2E-06 48.5 3.6 27 244-270 15-41 (233)
323 3tw8_B RAS-related protein RAB 93.1 0.044 1.5E-06 45.8 2.6 22 247-268 11-32 (181)
324 2pbr_A DTMP kinase, thymidylat 93.0 0.053 1.8E-06 46.5 3.1 23 247-269 2-24 (195)
325 2lkc_A Translation initiation 93.0 0.055 1.9E-06 45.3 3.1 26 243-268 6-31 (178)
326 3hws_A ATP-dependent CLP prote 93.0 0.079 2.7E-06 51.0 4.7 31 244-274 50-80 (363)
327 2qnr_A Septin-2, protein NEDD5 93.0 0.033 1.1E-06 52.9 1.9 20 249-268 22-41 (301)
328 1z0f_A RAB14, member RAS oncog 93.0 0.057 2E-06 45.0 3.2 23 247-269 17-39 (179)
329 3con_A GTPase NRAS; structural 93.0 0.057 1.9E-06 46.0 3.2 23 247-269 23-45 (190)
330 1ex7_A Guanylate kinase; subst 92.9 0.052 1.8E-06 48.4 3.0 21 248-268 4-24 (186)
331 3pfi_A Holliday junction ATP-d 92.9 0.077 2.6E-06 50.1 4.4 27 246-272 56-82 (338)
332 2a9k_A RAS-related protein RAL 92.9 0.059 2E-06 45.3 3.2 23 247-269 20-42 (187)
333 3clv_A RAB5 protein, putative; 92.9 0.058 2E-06 45.7 3.1 22 247-268 9-30 (208)
334 2cjw_A GTP-binding protein GEM 92.9 0.066 2.3E-06 46.5 3.5 22 247-268 8-29 (192)
335 2oil_A CATX-8, RAS-related pro 92.9 0.058 2E-06 46.2 3.1 23 247-269 27-49 (193)
336 2o5v_A DNA replication and rep 92.8 0.058 2E-06 52.9 3.4 36 231-267 12-48 (359)
337 2efe_B Small GTP-binding prote 92.8 0.062 2.1E-06 45.1 3.2 22 247-268 14-35 (181)
338 3pqc_A Probable GTP-binding pr 92.8 0.044 1.5E-06 46.5 2.3 23 247-269 25-47 (195)
339 2g6b_A RAS-related protein RAB 92.8 0.062 2.1E-06 45.1 3.2 23 247-269 12-34 (180)
340 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.062 2.1E-06 45.2 3.2 23 247-269 7-29 (186)
341 3uk6_A RUVB-like 2; hexameric 92.8 0.067 2.3E-06 51.0 3.8 29 244-272 69-97 (368)
342 2y8e_A RAB-protein 6, GH09086P 92.8 0.052 1.8E-06 45.3 2.7 22 247-268 16-37 (179)
343 2iwr_A Centaurin gamma 1; ANK 92.8 0.047 1.6E-06 46.0 2.4 23 247-269 9-31 (178)
344 3bwd_D RAC-like GTP-binding pr 92.7 0.065 2.2E-06 45.0 3.2 24 246-269 9-32 (182)
345 2qp9_X Vacuolar protein sortin 92.7 0.066 2.3E-06 51.8 3.6 27 246-272 85-111 (355)
346 3kkq_A RAS-related protein M-R 92.7 0.063 2.2E-06 45.4 3.1 22 247-268 20-41 (183)
347 3d8b_A Fidgetin-like protein 1 92.7 0.093 3.2E-06 50.7 4.6 29 244-272 116-144 (357)
348 1e4v_A Adenylate kinase; trans 92.7 0.065 2.2E-06 47.5 3.3 24 247-270 2-25 (214)
349 1qf9_A UMP/CMP kinase, protein 92.7 0.06 2E-06 46.0 2.9 25 245-269 6-30 (194)
350 3c5c_A RAS-like protein 12; GD 92.7 0.067 2.3E-06 46.0 3.2 23 247-269 23-45 (187)
351 3tkl_A RAS-related protein RAB 92.6 0.066 2.3E-06 45.7 3.2 23 247-269 18-40 (196)
352 3tlx_A Adenylate kinase 2; str 92.6 0.064 2.2E-06 49.0 3.3 26 244-269 28-53 (243)
353 2gf9_A RAS-related protein RAB 92.6 0.067 2.3E-06 45.7 3.2 23 247-269 24-46 (189)
354 2grj_A Dephospho-COA kinase; T 92.6 0.071 2.4E-06 47.4 3.4 24 246-269 13-36 (192)
355 2o8b_B DNA mismatch repair pro 92.6 0.073 2.5E-06 59.1 4.2 32 234-265 770-809 (1022)
356 2cxx_A Probable GTP-binding pr 92.6 0.048 1.6E-06 46.2 2.2 22 247-268 3-24 (190)
357 1vht_A Dephospho-COA kinase; s 92.5 0.068 2.3E-06 47.4 3.2 23 245-267 4-26 (218)
358 2ygr_A Uvrabc system protein A 92.5 0.036 1.2E-06 61.2 1.6 31 235-265 657-688 (993)
359 2vf7_A UVRA2, excinuclease ABC 92.5 0.026 9E-07 61.4 0.5 32 235-266 512-545 (842)
360 2px0_A Flagellar biosynthesis 92.5 0.062 2.1E-06 51.1 3.0 39 242-280 102-143 (296)
361 3ake_A Cytidylate kinase; CMP 92.5 0.087 3E-06 45.7 3.8 23 247-269 4-26 (208)
362 1svi_A GTP-binding protein YSX 92.4 0.053 1.8E-06 46.4 2.3 24 245-268 23-46 (195)
363 2bme_A RAB4A, RAS-related prot 92.4 0.061 2.1E-06 45.5 2.7 23 247-269 12-34 (186)
364 1m7b_A RND3/RHOE small GTP-bin 92.4 0.059 2E-06 46.0 2.6 22 247-268 9-30 (184)
365 1z06_A RAS-related protein RAB 92.4 0.076 2.6E-06 45.4 3.2 22 247-268 22-43 (189)
366 3dz8_A RAS-related protein RAB 92.4 0.064 2.2E-06 46.0 2.7 23 247-269 25-47 (191)
367 3kl4_A SRP54, signal recogniti 92.4 0.56 1.9E-05 47.1 10.0 27 243-269 95-121 (433)
368 4bas_A ADP-ribosylation factor 92.3 0.062 2.1E-06 46.0 2.6 22 247-268 19-40 (199)
369 3syl_A Protein CBBX; photosynt 92.3 0.074 2.5E-06 49.4 3.3 27 243-269 65-91 (309)
370 2r6f_A Excinuclease ABC subuni 92.3 0.038 1.3E-06 60.9 1.4 31 235-265 639-670 (972)
371 1j8m_F SRP54, signal recogniti 92.3 0.24 8.2E-06 47.0 6.9 26 244-269 97-122 (297)
372 3reg_A RHO-like small GTPase; 92.3 0.078 2.7E-06 45.5 3.2 23 247-269 25-47 (194)
373 2bov_A RAla, RAS-related prote 92.3 0.078 2.7E-06 45.6 3.2 23 247-269 16-38 (206)
374 1uj2_A Uridine-cytidine kinase 92.3 0.073 2.5E-06 48.6 3.1 23 247-269 24-46 (252)
375 1fzq_A ADP-ribosylation factor 92.3 0.051 1.8E-06 46.5 2.0 23 246-268 17-39 (181)
376 1ewq_A DNA mismatch repair pro 92.2 0.09 3.1E-06 56.6 4.2 24 245-268 576-599 (765)
377 3t1o_A Gliding protein MGLA; G 92.2 0.08 2.7E-06 44.9 3.2 22 247-268 16-37 (198)
378 1zd9_A ADP-ribosylation factor 92.2 0.08 2.7E-06 45.4 3.2 23 247-269 24-46 (188)
379 1vg8_A RAS-related protein RAB 92.2 0.081 2.8E-06 45.6 3.2 23 247-269 10-32 (207)
380 2atv_A RERG, RAS-like estrogen 92.2 0.079 2.7E-06 45.7 3.1 24 246-269 29-52 (196)
381 2r44_A Uncharacterized protein 92.2 0.078 2.7E-06 50.1 3.3 32 241-272 42-73 (331)
382 1zbd_A Rabphilin-3A; G protein 92.2 0.078 2.7E-06 45.8 3.1 23 247-269 10-32 (203)
383 1ksh_A ARF-like protein 2; sma 92.2 0.074 2.5E-06 45.1 2.9 27 243-269 16-42 (186)
384 2a5j_A RAS-related protein RAB 92.2 0.081 2.8E-06 45.4 3.1 23 247-269 23-45 (191)
385 1um8_A ATP-dependent CLP prote 92.1 0.12 4.1E-06 49.9 4.7 29 245-273 72-100 (376)
386 2qgz_A Helicase loader, putati 92.1 0.086 2.9E-06 50.2 3.5 27 244-270 151-177 (308)
387 2fg5_A RAB-22B, RAS-related pr 92.1 0.071 2.4E-06 45.9 2.7 23 247-269 25-47 (192)
388 1nrj_B SR-beta, signal recogni 92.1 0.084 2.9E-06 46.2 3.2 24 246-269 13-36 (218)
389 3t5g_A GTP-binding protein RHE 92.1 0.073 2.5E-06 44.9 2.7 22 247-268 8-29 (181)
390 4fcw_A Chaperone protein CLPB; 92.1 0.072 2.5E-06 49.4 2.9 36 246-281 48-85 (311)
391 2ffh_A Protein (FFH); SRP54, s 92.0 0.43 1.5E-05 47.8 8.7 26 244-269 97-122 (425)
392 2qen_A Walker-type ATPase; unk 92.0 0.13 4.3E-06 48.0 4.5 32 245-279 31-62 (350)
393 1x3s_A RAS-related protein RAB 92.0 0.089 3E-06 44.7 3.2 22 247-268 17-38 (195)
394 1np6_A Molybdopterin-guanine d 92.0 0.091 3.1E-06 46.1 3.3 23 246-268 7-29 (174)
395 2p5s_A RAS and EF-hand domain 92.0 0.086 2.9E-06 45.6 3.1 23 247-269 30-52 (199)
396 2p67_A LAO/AO transport system 92.0 0.074 2.5E-06 51.3 2.9 35 234-268 44-79 (341)
397 3vfd_A Spastin; ATPase, microt 91.9 0.12 4.2E-06 50.3 4.5 29 244-272 147-175 (389)
398 2fh5_B SR-beta, signal recogni 91.9 0.09 3.1E-06 45.9 3.2 24 246-269 8-31 (214)
399 3sr0_A Adenylate kinase; phosp 91.9 0.088 3E-06 47.4 3.1 23 247-269 2-24 (206)
400 3k53_A Ferrous iron transport 91.9 0.071 2.4E-06 49.2 2.6 23 247-269 5-27 (271)
401 2qmh_A HPR kinase/phosphorylas 91.9 0.083 2.9E-06 48.1 3.0 26 244-269 33-58 (205)
402 2xb4_A Adenylate kinase; ATP-b 91.9 0.089 3E-06 47.2 3.2 24 247-270 2-25 (223)
403 2ohf_A Protein OLA1, GTP-bindi 91.9 0.082 2.8E-06 52.6 3.2 28 241-268 18-45 (396)
404 2www_A Methylmalonic aciduria 91.8 0.089 3.1E-06 51.0 3.3 25 244-268 73-97 (349)
405 3oes_A GTPase rhebl1; small GT 91.8 0.079 2.7E-06 45.9 2.7 24 246-269 25-48 (201)
406 3cbq_A GTP-binding protein REM 91.8 0.062 2.1E-06 46.8 2.0 21 247-267 25-45 (195)
407 1f6b_A SAR1; gtpases, N-termin 91.7 0.054 1.8E-06 47.3 1.5 32 236-268 16-48 (198)
408 1hqc_A RUVB; extended AAA-ATPa 91.7 0.096 3.3E-06 48.8 3.3 28 245-272 38-65 (324)
409 3lxw_A GTPase IMAP family memb 91.7 0.09 3.1E-06 48.1 3.1 23 247-269 23-45 (247)
410 1gtv_A TMK, thymidylate kinase 91.7 0.037 1.3E-06 48.5 0.4 24 247-270 2-25 (214)
411 2gno_A DNA polymerase III, gam 91.7 0.53 1.8E-05 44.8 8.5 96 245-355 18-123 (305)
412 2f7s_A C25KG, RAS-related prot 91.7 0.092 3.1E-06 45.9 3.0 23 247-269 27-49 (217)
413 1ypw_A Transitional endoplasmi 91.7 0.067 2.3E-06 57.8 2.4 32 241-272 507-538 (806)
414 1zj6_A ADP-ribosylation factor 91.7 0.086 2.9E-06 45.0 2.7 25 244-268 15-39 (187)
415 2h17_A ADP-ribosylation factor 91.6 0.071 2.4E-06 45.3 2.1 22 247-268 23-44 (181)
416 2ew1_A RAS-related protein RAB 91.6 0.083 2.8E-06 46.5 2.6 22 247-268 28-49 (201)
417 3dm5_A SRP54, signal recogniti 91.6 0.42 1.4E-05 48.2 8.0 25 244-268 99-123 (443)
418 2bjv_A PSP operon transcriptio 91.6 0.2 6.8E-06 45.6 5.2 40 244-283 28-69 (265)
419 2il1_A RAB12; G-protein, GDP, 91.5 0.084 2.9E-06 45.5 2.5 22 247-268 28-49 (192)
420 1w1w_A Structural maintenance 91.5 0.12 4.2E-06 51.1 4.0 27 242-268 23-49 (430)
421 2qu8_A Putative nucleolar GTP- 91.5 0.096 3.3E-06 46.6 3.0 23 246-268 30-52 (228)
422 3cph_A RAS-related protein SEC 91.5 0.11 3.6E-06 45.1 3.2 22 247-268 22-43 (213)
423 3pih_A Uvrabc system protein A 91.5 0.077 2.6E-06 58.2 2.7 29 235-263 599-628 (916)
424 2o52_A RAS-related protein RAB 91.5 0.081 2.8E-06 46.0 2.4 22 247-268 27-48 (200)
425 2h57_A ADP-ribosylation factor 91.5 0.064 2.2E-06 45.9 1.7 23 247-269 23-45 (190)
426 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.17 5.9E-06 46.5 4.7 25 244-268 3-27 (260)
427 2zan_A Vacuolar protein sortin 91.4 0.15 5.2E-06 50.9 4.6 25 245-269 167-191 (444)
428 2gf0_A GTP-binding protein DI- 91.4 0.093 3.2E-06 44.8 2.6 23 246-268 9-31 (199)
429 1mky_A Probable GTP-binding pr 91.4 0.094 3.2E-06 52.2 3.0 23 247-269 182-204 (439)
430 2q3h_A RAS homolog gene family 91.4 0.1 3.5E-06 44.9 2.9 22 247-268 22-43 (201)
431 2c9o_A RUVB-like 1; hexameric 91.3 0.14 4.9E-06 51.1 4.4 28 244-271 62-89 (456)
432 3q3j_B RHO-related GTP-binding 91.3 0.11 3.9E-06 45.8 3.2 23 247-269 29-51 (214)
433 1gwn_A RHO-related GTP-binding 91.3 0.092 3.2E-06 46.2 2.6 22 247-268 30-51 (205)
434 2fna_A Conserved hypothetical 91.3 0.14 4.7E-06 47.8 3.9 34 246-280 31-64 (357)
435 2fv8_A H6, RHO-related GTP-bin 91.3 0.099 3.4E-06 45.6 2.7 23 247-269 27-49 (207)
436 1moz_A ARL1, ADP-ribosylation 91.2 0.055 1.9E-06 45.7 1.0 25 243-267 16-40 (183)
437 2atx_A Small GTP binding prote 91.2 0.099 3.4E-06 44.7 2.6 23 247-269 20-42 (194)
438 2fu5_C RAS-related protein RAB 91.2 0.068 2.3E-06 45.2 1.5 22 247-268 10-31 (183)
439 2bcg_Y Protein YP2, GTP-bindin 91.2 0.1 3.4E-06 45.3 2.6 23 247-269 10-32 (206)
440 2g3y_A GTP-binding protein GEM 91.2 0.12 4.2E-06 46.3 3.3 21 247-267 39-59 (211)
441 2z4s_A Chromosomal replication 91.1 0.1 3.5E-06 52.1 3.1 36 245-280 130-169 (440)
442 3gmt_A Adenylate kinase; ssgci 91.1 0.15 5E-06 47.2 3.8 25 246-270 9-33 (230)
443 3qf7_A RAD50; ABC-ATPase, ATPa 91.0 0.1 3.5E-06 50.9 2.8 26 240-266 19-44 (365)
444 1g41_A Heat shock protein HSLU 91.0 0.18 6.1E-06 51.0 4.7 31 246-276 51-81 (444)
445 4edh_A DTMP kinase, thymidylat 90.9 0.18 6.3E-06 45.5 4.2 50 243-292 4-54 (213)
446 2gco_A H9, RHO-related GTP-bin 90.9 0.11 3.7E-06 45.1 2.7 22 247-268 27-48 (201)
447 4gzl_A RAS-related C3 botulinu 90.9 0.11 3.8E-06 45.3 2.7 24 246-269 31-54 (204)
448 2qby_B CDC6 homolog 3, cell di 90.8 0.12 4.2E-06 49.1 3.1 27 243-269 43-69 (384)
449 3tqf_A HPR(Ser) kinase; transf 90.8 0.19 6.4E-06 44.9 4.0 25 244-268 15-39 (181)
450 1sxj_D Activator 1 41 kDa subu 90.8 0.14 4.7E-06 48.2 3.4 24 246-269 59-82 (353)
451 2b6h_A ADP-ribosylation factor 90.8 0.095 3.2E-06 45.3 2.1 25 244-268 28-52 (192)
452 3b1v_A Ferrous iron uptake tra 90.7 0.12 4.2E-06 48.3 2.9 22 247-268 5-26 (272)
453 3co5_A Putative two-component 90.7 0.058 2E-06 45.0 0.6 36 244-281 26-61 (143)
454 2hup_A RAS-related protein RAB 90.7 0.12 4.1E-06 45.0 2.7 23 247-269 31-53 (201)
455 2xtp_A GTPase IMAP family memb 90.7 0.11 3.9E-06 47.1 2.6 24 246-269 23-46 (260)
456 4dkx_A RAS-related protein RAB 90.6 0.14 4.8E-06 46.1 3.2 23 247-269 15-37 (216)
457 3a8t_A Adenylate isopentenyltr 90.6 0.14 4.7E-06 50.0 3.3 27 244-270 39-65 (339)
458 2j1l_A RHO-related GTP-binding 90.6 0.11 3.9E-06 45.6 2.4 22 247-268 36-57 (214)
459 2orw_A Thymidine kinase; TMTK, 90.5 0.14 4.8E-06 45.0 3.0 25 244-268 2-26 (184)
460 3t34_A Dynamin-related protein 90.5 0.13 4.5E-06 49.5 3.1 32 234-268 25-57 (360)
461 3llu_A RAS-related GTP-binding 90.5 0.11 3.9E-06 44.8 2.4 22 247-268 22-43 (196)
462 2hf9_A Probable hydrogenase ni 90.5 0.12 4.3E-06 45.4 2.6 24 246-269 39-62 (226)
463 2h92_A Cytidylate kinase; ross 90.4 0.18 6.3E-06 44.3 3.7 25 245-269 3-27 (219)
464 1wf3_A GTP-binding protein; GT 90.4 0.11 3.9E-06 49.2 2.4 24 246-269 8-31 (301)
465 1e69_A Chromosome segregation 90.4 0.14 4.7E-06 48.8 3.0 26 240-266 20-45 (322)
466 3cpj_B GTP-binding protein YPT 90.3 0.16 5.4E-06 44.9 3.2 23 247-269 15-37 (223)
467 2yc2_C IFT27, small RAB-relate 90.3 0.073 2.5E-06 45.7 0.9 22 247-268 22-43 (208)
468 1nij_A Hypothetical protein YJ 90.2 0.11 3.6E-06 49.6 2.1 24 246-269 5-28 (318)
469 2j0v_A RAC-like GTP-binding pr 90.1 0.14 4.8E-06 44.5 2.7 23 247-269 11-33 (212)
470 3v9p_A DTMP kinase, thymidylat 90.1 0.17 5.9E-06 46.3 3.3 28 242-269 22-49 (227)
471 1sxj_A Activator 1 95 kDa subu 90.1 0.24 8.2E-06 50.4 4.7 29 244-272 76-104 (516)
472 3e1s_A Exodeoxyribonuclease V, 90.0 0.26 8.7E-06 51.2 4.9 25 244-268 203-227 (574)
473 3a1s_A Iron(II) transport prot 90.0 0.17 5.8E-06 46.7 3.2 22 247-268 7-28 (258)
474 1ls1_A Signal recognition part 90.0 0.17 5.7E-06 47.9 3.3 38 244-281 97-136 (295)
475 1g8p_A Magnesium-chelatase 38 90.0 0.11 3.9E-06 48.8 2.1 26 245-270 45-70 (350)
476 1ko7_A HPR kinase/phosphatase; 90.0 0.21 7.4E-06 48.1 4.0 38 244-281 143-184 (314)
477 1a7j_A Phosphoribulokinase; tr 89.9 0.11 3.8E-06 49.0 1.9 25 244-268 4-28 (290)
478 1xjc_A MOBB protein homolog; s 89.8 0.19 6.4E-06 44.2 3.2 22 247-268 6-27 (169)
479 3iev_A GTP-binding protein ERA 89.8 0.16 5.4E-06 48.2 2.9 24 246-269 11-34 (308)
480 2f6r_A COA synthase, bifunctio 89.8 0.14 4.9E-06 47.9 2.5 23 246-268 76-98 (281)
481 3p32_A Probable GTPase RV1496/ 89.8 0.86 2.9E-05 43.9 8.2 26 243-268 77-102 (355)
482 4dhe_A Probable GTP-binding pr 89.7 0.071 2.4E-06 46.7 0.4 25 245-269 29-53 (223)
483 4djt_A GTP-binding nuclear pro 89.7 0.077 2.6E-06 46.5 0.6 22 247-268 13-34 (218)
484 3hu3_A Transitional endoplasmi 89.7 0.21 7.2E-06 50.8 3.9 37 242-279 235-271 (489)
485 3i8s_A Ferrous iron transport 89.6 0.15 5.3E-06 47.3 2.6 23 247-269 5-27 (274)
486 1tue_A Replication protein E1; 89.6 0.17 5.9E-06 46.2 2.8 30 242-271 55-84 (212)
487 2ocp_A DGK, deoxyguanosine kin 89.5 0.17 5.8E-06 45.7 2.7 27 244-270 1-27 (241)
488 1a5t_A Delta prime, HOLB; zinc 89.5 1.1 3.6E-05 42.7 8.5 22 247-268 26-47 (334)
489 3crm_A TRNA delta(2)-isopenten 89.5 0.19 6.5E-06 48.7 3.3 24 247-270 7-30 (323)
490 3umf_A Adenylate kinase; rossm 89.5 0.21 7.3E-06 45.4 3.4 26 244-269 28-53 (217)
491 3iby_A Ferrous iron transport 89.4 0.16 5.5E-06 46.9 2.6 22 247-268 3-24 (256)
492 2wsm_A Hydrogenase expression/ 89.3 0.18 6E-06 44.3 2.7 26 244-269 29-54 (221)
493 2x77_A ADP-ribosylation factor 89.3 0.1 3.5E-06 44.5 1.1 25 244-268 21-45 (189)
494 3nbx_X ATPase RAVA; AAA+ ATPas 89.2 0.19 6.5E-06 51.4 3.1 32 240-271 36-67 (500)
495 1ltq_A Polynucleotide kinase; 89.0 0.22 7.4E-06 46.2 3.2 22 247-268 4-25 (301)
496 3d3q_A TRNA delta(2)-isopenten 89.0 0.2 6.7E-06 48.9 3.0 24 247-270 9-32 (340)
497 3cf2_A TER ATPase, transitiona 88.9 0.24 8.4E-06 53.6 3.8 26 247-272 240-265 (806)
498 2qag_A Septin-2, protein NEDD5 88.8 0.18 6.2E-06 49.0 2.6 22 247-268 39-60 (361)
499 2dy1_A Elongation factor G; tr 88.8 0.19 6.3E-06 53.1 2.8 30 240-269 4-33 (665)
500 2aka_B Dynamin-1; fusion prote 88.7 0.18 6.2E-06 46.4 2.4 24 246-269 27-50 (299)
No 1
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=5.6e-87 Score=689.70 Aligned_cols=344 Identities=53% Similarity=0.909 Sum_probs=329.8
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLG 99 (369)
..|+|++|.|++++++|+.++++||+|+|.++.+.|||+++++|.+.+|+|++++||++|++|++||++++||||++|||
T Consensus 9 ~~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLG 88 (600)
T 3vr4_A 9 QIGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIIS 88 (600)
T ss_dssp CCEEEEEEETTEEEEESCTTSCTTCEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTT
T ss_pred cceEEEEEECcEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHh
Confidence 36999999999999999988999999999766799999999999999999999999999999999999999999999999
Q ss_pred eeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceE
Q 017581 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (369)
Q Consensus 100 RVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~ 179 (369)
||||++|+|||+.++..|+.|++||+++++++.+++|+|.|. +++||.|.+|||+|+|+|+.++.|+||+||+..|+|+
T Consensus 89 rV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~-~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~ 167 (600)
T 3vr4_A 89 QMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEAT-IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQ 167 (600)
T ss_dssp CEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEEC-SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEE
T ss_pred hhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcc-cccCCEecCCceEEEEecCCceeeeeecCCCCCceEE
Confidence 999999999999877777789999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EeccCCcccccceEEEEEee-cceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCCh
Q 017581 180 YVAPAGQYSLKDTVLELEFQ-GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (369)
Q Consensus 180 ~~~~~g~~~~~~~v~~~~~~-~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GK 258 (369)
|| ++|+|+++++|+++++. |. ++++|.|+||++.++|+++|.++++||.||||+||+|+||+||||++|||++|+||
T Consensus 168 ~i-~~g~~~v~~~v~~i~~~~g~-~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GK 245 (600)
T 3vr4_A 168 KI-ESGSFTIDDPICVIETEQGL-KELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGK 245 (600)
T ss_dssp EE-CCEEECTTSCCEEEEETTEE-EEECSCEEEETTSCCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCH
T ss_pred Ee-cCCcceeceeEEEEeccCCc-ccccccccccccCCCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccH
Confidence 99 99999999999999864 66 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHH
Q 017581 259 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 338 (369)
Q Consensus 259 stLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAE 338 (369)
|+|+.+|++++++|+|||++||||++|+++|+++|+++++|. .+.++|+||++|+||+|+|+.+|++++++|+|+||
T Consensus 246 T~L~~~ia~~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~---~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAE 322 (600)
T 3vr4_A 246 TVVQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPN---TGESLMERTVLIANTSNMPVAAREASIYTGITIAE 322 (600)
T ss_dssp HHHHHHHHHHSSCSEEEEEEEEECHHHHHHHHHHTTTCBCTT---TCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997766554 45678999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 339 YFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 339 yfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||||+|+||||++||+||||+|+||||++||
T Consensus 323 yfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lg 353 (600)
T 3vr4_A 323 YFRDMGYDVAIMADSTSRWAEALREMSGRLE 353 (600)
T ss_dssp HHHTTTCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEecchHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 2
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=3e-88 Score=696.93 Aligned_cols=345 Identities=57% Similarity=0.969 Sum_probs=268.9
Q ss_pred eEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccc
Q 017581 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLG 99 (369)
..|+|++|.|++++++|+.++++||+|+|.++.+.|||+++++|.+.+|+|+++.||++|++|++||++++||||++|||
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLG 82 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLT 82 (588)
T ss_dssp ----------------------------------------------------------CCCCCSSSSSCCEEEESTTCTT
T ss_pred ceeEEEEEECCEEEEEcCCCCccCCEEEEcCCceEEEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHh
Confidence 56999999999999999989999999999755689999999999999999999999999999999999999999999999
Q ss_pred eeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceE
Q 017581 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (369)
Q Consensus 100 RVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~ 179 (369)
||||++|||||+.++..++ |++||+++++++.+++|+|.|. +++||.|.+|||+|+|+|+.++.|+||+||+..|+|+
T Consensus 83 rV~DglgrPLd~~~~~~g~-~~~~g~~~~~l~~~~~w~f~p~-~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~ 160 (588)
T 3mfy_A 83 SIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK-AKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIV 160 (588)
T ss_dssp CEEETTCCSSSSCCCCCSS-SCCCCCCCCSSCSSCCEEEEEC-CCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEE
T ss_pred hccCCCCCcccCccccccc-ccccccccCccccccccccccc-cccCcccccCceEEEEecccceeeeeecCCCCCceEE
Confidence 9999999999999888776 9999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EeccCCcccccceEEEEEe-ecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCCh
Q 017581 180 YVAPAGQYSLKDTVLELEF-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (369)
Q Consensus 180 ~~~~~g~~~~~~~v~~~~~-~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GK 258 (369)
+|+++|+|+++++|++++. .|..++++|.|+||++.++|+++|+++++||.||||+||+|+||+||||++|||++||||
T Consensus 161 ~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GK 240 (588)
T 3mfy_A 161 EIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGK 240 (588)
T ss_dssp EECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHH
T ss_pred EeccCCcccccceEEEEecCCCccccccccccccccCCCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCH
Confidence 9999999999999999985 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHH
Q 017581 259 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 338 (369)
Q Consensus 259 stLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAE 338 (369)
|+|+++|++++++|+|||++||||++|+++|+++|+++++|. .+.++|+||++|+||+|+|+.+|++++++|+|+||
T Consensus 241 T~L~~~ia~~~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~---~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAE 317 (588)
T 3mfy_A 241 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPK---TGKPLMERTVLIANTSNMPVAAREASIYTGITIAE 317 (588)
T ss_dssp HHHHHHHHHHSSCSEEEEEECCSSSSHHHHHHHHTTTCEETT---TTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHHhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997665543 45678999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 339 YFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 339 yfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||||+|+|||+++||+||||+||||||++||
T Consensus 318 yfrd~G~dVLl~~DsltR~A~A~rEis~~lg 348 (588)
T 3mfy_A 318 YFRDMGYDVALMADSTSRWAEALREISGRLE 348 (588)
T ss_dssp HHHHTTCEEEEEEECTTTCCCCC--------
T ss_pred HHHHcCCCEEEeecchHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999986
No 3
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=1.1e-85 Score=677.73 Aligned_cols=340 Identities=57% Similarity=0.985 Sum_probs=325.2
Q ss_pred EeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEecCccccce
Q 017581 21 YGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (369)
Q Consensus 21 ~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~VpvG~~LLGR 100 (369)
.|+|++|.|++++++|+.++++||+|++.++.+.|||+++++|.+.+|+|++++||++|++|++||++++||||++||||
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGr 82 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNG 82 (578)
T ss_dssp EEEEEEEETTEEEEESCTTCCTTEEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTC
T ss_pred eeEEEEEECCEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhh
Confidence 69999999999999999889999999997667999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCCCCceEE
Q 017581 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTY 180 (369)
Q Consensus 101 VlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~~~~v~~ 180 (369)
|||++|+|||+.++..|+ |++||+++++++.+++|.|+|. +++||.|.+||++|+|+|+..+ |+|++||+..|+|++
T Consensus 83 V~DglG~PlD~~~~~~g~-~~~~g~~~~~l~~~~~w~f~p~-~~~g~~v~~G~i~g~v~e~~~i-h~i~~pp~~~g~v~~ 159 (578)
T 3gqb_A 83 IYDGIQRPLERIREKTGI-YITRGVVVHALDREKKWAWTPM-VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKE 159 (578)
T ss_dssp EECTTSCBHHHHHHHHCS-BCCTTCCCCSSCSSSCEEEEEC-CCTTCEECTTCEEEEEEETTEE-EEEECCTTCCEEEEE
T ss_pred hhCcCCCcccccccccCc-cccccccCCCcCcccccccccc-cccCccccccceeeeecccccc-eecccCCCcCceeEE
Confidence 999999999998665564 9999999999999999999997 9999999999999999998877 999999999999999
Q ss_pred eccCCcccccceEEEEEeecceeeeeeccceeccCCCCccccccccceeccCceeeeccccccCCCeEeecCCCCCChHH
Q 017581 181 VAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV 260 (369)
Q Consensus 181 ~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKst 260 (369)
|+++|+|+++++|+++++ | ++++|.|+||++.++|+++|.++++||.||||+||+|+||+||||++|||++|+|||+
T Consensus 160 i~~~G~~~v~~~i~~~~~-g--~~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~ 236 (578)
T 3gqb_A 160 VKPAGEYTVEEPVVVLED-G--TELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSV 236 (578)
T ss_dssp ECCSEEECTTSCSEEETT-C--CEECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHH
T ss_pred eccCCcccccceeEEeec-C--ccccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHH
Confidence 999999999999999985 4 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHH
Q 017581 261 ISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYF 340 (369)
Q Consensus 261 Ll~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyf 340 (369)
|+.+|++++++|+|||++||||++|+++|+++|+++++|. .+.++|+||++|+||+|+|+.+|++++++|+|+||||
T Consensus 237 l~~~ia~~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~---~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyf 313 (578)
T 3gqb_A 237 TQQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPK---TGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF 313 (578)
T ss_dssp HHHHHHHHSSCSEEEEEEEEECHHHHHHHHTTGGGCBCTT---TSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997766654 4567999999999999999999999999999999999
Q ss_pred HHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 341 RDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 341 r~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||+|+|||+++||+||||+|+||+|++||
T Consensus 314 rd~G~dVLl~~Ds~tR~A~A~rEis~~lg 342 (578)
T 3gqb_A 314 RDQGFSVALMADSTSRWAEALREISSRLE 342 (578)
T ss_dssp HHTTCEEEECCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCCEEEEecChHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999987
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=3e-69 Score=551.23 Aligned_cols=268 Identities=26% Similarity=0.358 Sum_probs=236.4
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
+++.++++|++|+.....+++|+|++|.|++++++|++++++||+|+|.+ +..|+|+++++|.+.+++|++++||++|+
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~~~-~~~g~v~~l~~d~v~~~~~~~~~gi~~G~ 86 (513)
T 3oaa_A 8 ISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPG-NRYAIALNLERDSVGAVVMGPYADLAEGM 86 (513)
T ss_dssp ----------------CCTTEEEEEEEETTEEEEEECTTCBTTCEEEETT-TEEEEEEEECSSCEEEEESSCCSSCCTTC
T ss_pred HHHHHHHHHHhcCCCCCceeEEEEEEEECcEEEEECCccCCcCCEEEECC-CCEEEEEEeeCCEEEEEEeCCccCCCCCC
Confidence 46789999999999999999999999999999999999999999999974 48999999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|++||++++||||++|||||+|++|+|||+.++ +.
T Consensus 87 ~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~---------------i~----------------------------- 122 (513)
T 3oaa_A 87 KVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP---------------LD----------------------------- 122 (513)
T ss_dssp EEECCSCSSEEECSGGGTTCEEETTSCBTTCSCS---------------CC-----------------------------
T ss_pred EEEEcCCCCeEeeCHHHhccchhhcCcCccCCCC---------------CC-----------------------------
Confidence 9999999999999999999999999999998531 10
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l 239 (369)
..++||++.++| +++|+++++||+||||+||+|
T Consensus 123 ----------------------------------------------~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l 156 (513)
T 3oaa_A 123 ----------------------------------------------HDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSM 156 (513)
T ss_dssp ----------------------------------------------CSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHH
T ss_pred ----------------------------------------------ccceeecccCCCCccccCCcCcccccceeeeccc
Confidence 014678876554 999999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
+||+||||++|||++|+|||+| +.+|+|++++|+ |||++||||++|+++|+++| ++.++|+||+||+|
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l----------~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 157 IPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKL----------EEHGALANTIVVVA 226 (513)
T ss_dssp SCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHH----------HHHSCSTTEEEEEE
T ss_pred cccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHH----------hhcCcccceEEEEE
Confidence 9999999999999999999999 569999998886 89999999999999999987 67899999999999
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+||.+|+++||+|+|+||||||+|+|||+|+|||||||+||||||.+||
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lg 278 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLR 278 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 5
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=8.9e-69 Score=549.08 Aligned_cols=269 Identities=25% Similarity=0.383 Sum_probs=243.9
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
++|.++++|++|++..+.+.+|+|++|.|++++++|++++++||+|+|..++..|+|+++++|.+.+++|+++.||++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~~~g~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 99 (515)
T 2r9v_A 20 ITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDIKEGH 99 (515)
T ss_dssp ---------CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEETTTCCEEEEEECCTTCEEEEEESCCTTCCTTC
T ss_pred HHHHHHHHHHhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEecCCeEEEEEEecCCeEEEEEecCcccccCCC
Confidence 46889999999999999999999999999999999999999999999942235799999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|++||++++||||++|||||+|++|+|||+.++ +
T Consensus 100 ~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~---------------i------------------------------ 134 (515)
T 2r9v_A 100 TVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGP---------------I------------------------------ 134 (515)
T ss_dssp EEEEEEEECEEEESGGGTTCEECTTSCBCSSSCC---------------C------------------------------
T ss_pred EEEEeCCcceeecCccceeeEEcCCCCCcCCCCC---------------C------------------------------
Confidence 9999999999999999999999999999998421 0
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l 239 (369)
.+.++||++.++| +++|+++++|+.||||+||+|
T Consensus 135 ---------------------------------------------~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l 169 (515)
T 2r9v_A 135 ---------------------------------------------NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSM 169 (515)
T ss_dssp ---------------------------------------------CCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHH
T ss_pred ---------------------------------------------CccceeecccCCCCcccccCCCcchhcCccccccc
Confidence 0125789987665 999999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
+||+||||++|||++|+|||+| +.+|++++++|+ |||++||||++|+++|+++| ++.++|+||+||+|
T Consensus 170 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~----------~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 170 IPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKL----------RQYGAMEYTTVVVA 239 (515)
T ss_dssp SCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHH----------HHTTGGGGEEEEEE
T ss_pred cccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHH----------HhCCCcceeEEEEE
Confidence 9999999999999999999999 569999999995 89999999999999999987 67899999999999
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+||.+|+++||+|+|+||||||+|+|||+|+|||||||+||||+|.+||
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lg 291 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMR 291 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 6
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=1.3e-68 Score=547.51 Aligned_cols=268 Identities=23% Similarity=0.380 Sum_probs=234.2
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
++|.++++|++|++..+.+.+|+|++|.|++++++|++++.+||+|+|.++ ..|+|+++++|.+.+++|+++.||++|+
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 86 (502)
T 2qe7_A 8 ISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENG-VMGMAQNLEEDNVGVVILGPYTEIREGT 86 (502)
T ss_dssp -------------------CEEEEEEEETTEEEEECCTTCBTTEEEEETTS-CEEEEEEEETTEEEEEECSCCSSCCTTC
T ss_pred HHHHHHHHHHhcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEECCC-CEEEEEEecCCeEEEEEecCccCCcCCC
Confidence 468899999999999999999999999999999999999999999999754 5799999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|++||++++||||++|||||+|++|+|||+.++ +
T Consensus 87 ~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~---------------i------------------------------ 121 (502)
T 2qe7_A 87 QVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP---------------I------------------------------ 121 (502)
T ss_dssp EEEEEEEESEEECSGGGTTCEECTTCCBSSCSCC---------------C------------------------------
T ss_pred EEEEeCCcceEEcccccceEEEccCCCCCCCCCC---------------C------------------------------
Confidence 9999999999999999999999999999998431 0
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l 239 (369)
.+.++||++.++| +++|+++++|+.||||+||+|
T Consensus 122 ---------------------------------------------~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l 156 (502)
T 2qe7_A 122 ---------------------------------------------ETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSM 156 (502)
T ss_dssp ---------------------------------------------CCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHS
T ss_pred ---------------------------------------------CCCceeeccCCCCCcccccCCCCccccceeecccc
Confidence 0124688987665 999999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
+||+||||++|||++|+|||+| +.+|++++++|+ |||++||||++|+++|+++| ++.++|+||+||+|
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~----------~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 157 IPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETL----------RQHDALDYTIVVTA 226 (502)
T ss_dssp SCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHH----------HHTTCSTTEEEEEE
T ss_pred cccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHH----------hhCCCcceeEEEEE
Confidence 9999999999999999999999 569999999995 79999999999999999987 67899999999999
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+||.+|+++||+|+|+||||||+|+|||+++|||||||+||||+|.+||
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lg 278 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLR 278 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 7
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=2e-68 Score=546.64 Aligned_cols=268 Identities=24% Similarity=0.372 Sum_probs=236.9
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
++|.++++|++|++..+.+.+|+|++|.|++++++|++++.+||+|+|.++ ..|+|+++++|++.+++|+++.||++|+
T Consensus 9 ~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 87 (507)
T 1fx0_A 9 ISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEG-TIGIALNLESNNVGVVLMGDGLMIQEGS 87 (507)
T ss_dssp ----------------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEETTC-CEEEEEEECSSEEEEEECSCGGGCCTTC
T ss_pred HHHHHHHHHHhccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEECCC-ceEEEEeccCCeEEEEEecCccCCcCCC
Confidence 467899999999999999999999999999999999999999999999754 5799999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|++||++++||||++|||||+|++|+|||+.++.
T Consensus 88 ~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i--------------------------------------------- 122 (507)
T 1fx0_A 88 SVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI--------------------------------------------- 122 (507)
T ss_dssp EEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCC---------------------------------------------
T ss_pred EEEEeCCcceeecCccceeEEEccCCcCCCCCCCC---------------------------------------------
Confidence 99999999999999999999999999999984310
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l 239 (369)
.+.++||++.++| +++|+++++|+.||||+||+|
T Consensus 123 ---------------------------------------------~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l 157 (507)
T 1fx0_A 123 ---------------------------------------------TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 157 (507)
T ss_dssp ---------------------------------------------CCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTT
T ss_pred ---------------------------------------------CCCceeeccCCCCCcccccccCCcccccceecccc
Confidence 0124688887665 999999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHH-HHHHHhhcCCCe-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~~d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
+||+||||++|||++|+|||+| +.+|++++++|+ |||++||||++|+++|+++| ++.++|+||+||+|
T Consensus 158 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~----------~~~g~m~rtvvV~a 227 (507)
T 1fx0_A 158 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNF----------QERGAMEYTIVVAE 227 (507)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHT----------GGGTGGGSEEEEEE
T ss_pred cccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHH----------HhcCccccceEEEE
Confidence 9999999999999999999999 569999999984 89999999999999999986 78899999999999
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+||.+|+++|++|+++||||||+|+|||+++|||||||+||||+|.+||
T Consensus 228 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lg 279 (507)
T 1fx0_A 228 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLR 279 (507)
T ss_dssp CTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 8
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=4.7e-68 Score=544.24 Aligned_cols=268 Identities=23% Similarity=0.347 Sum_probs=235.9
Q ss_pred CCchhhhhhcCCCcccCceeEeEEEEEECcEEEEeecCCCccccEEEEcCCcEEEEEEEEeCCEEEEEEecCCCCCCCCC
Q 017581 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (369)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~~~~~geVi~i~~d~v~l~~~~~t~Gi~~G~ 80 (369)
++|.++++|++|++..+.+.+|+|++|.|++++++|++++.+||+|+|.++ ..|+|+++++|++.+++|+++.||++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 86 (510)
T 2ck3_A 8 VSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSG-LKGMSLNLEPDNVGVVVFGNDKLIKEGD 86 (510)
T ss_dssp ----------------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEETTS-CEEEEEEECSSCEEEEESSCGGGCCTTC
T ss_pred HHHHHHHHHHhcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEECCC-CeEEEEeccCCeEEEEEECCcccccCCC
Confidence 468899999999999999999999999999999999999999999999754 5799999999999999999999999999
Q ss_pred eEEEcCCceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeee
Q 017581 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (369)
Q Consensus 81 ~V~~tg~~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e 160 (369)
+|++||++++||||++|||||+|++|+|||+.++ +.
T Consensus 87 ~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~---------------i~----------------------------- 122 (510)
T 2ck3_A 87 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGP---------------IG----------------------------- 122 (510)
T ss_dssp EEEECCCCCEEEESGGGTTCEECTTSCBCSSSCC---------------CC-----------------------------
T ss_pred EEEEeCCcceeecCccceeeEEccCCcCcCCCCC---------------CC-----------------------------
Confidence 9999999999999999999999999999998531 10
Q ss_pred cccccccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeecc
Q 017581 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (369)
Q Consensus 161 ~~~~~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l 239 (369)
..++||++.++| +++|+++++|+.||||+||+|
T Consensus 123 ----------------------------------------------~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l 156 (510)
T 2ck3_A 123 ----------------------------------------------SKARRRVGLKAPGIIPRISVREPMQTGIKAVDSL 156 (510)
T ss_dssp ----------------------------------------------CSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHH
T ss_pred ----------------------------------------------ccceeecccCCCCcccccccCccccccceeeccc
Confidence 124688887665 999999999999999999999
Q ss_pred ccccCCCeEeecCCCCCChHHH-HHHHHhhcC--------CC-eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSN--------SD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVM 309 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstL-l~~ia~~~~--------~d-~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l 309 (369)
+||+||||++|||++|+|||+| +.+|++++. +| +|||++||||++|+++|+++| ++.++|
T Consensus 157 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~----------~~~g~m 226 (510)
T 2ck3_A 157 VPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL----------TDADAM 226 (510)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHH----------HHTTCG
T ss_pred cccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHH----------HhcCCc
Confidence 9999999999999999999999 569999876 66 599999999999999999987 678999
Q ss_pred ceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 310 KRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 310 ~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+||+||+||+|+||.+|+++||+|+++||||||+|+|||+|+|||||||+||||+|.+||
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lg 286 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 286 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999986
No 9
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=2.8e-65 Score=518.33 Aligned_cols=251 Identities=24% Similarity=0.371 Sum_probs=230.8
Q ss_pred eeEeEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCC-CCCeEEEcCCceEEecC
Q 017581 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELG 94 (369)
Q Consensus 19 ~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~-~G~~V~~tg~~l~VpvG 94 (369)
+++|+|++|.|++++++|++++++||+|+|. ++ .+.|||+++++|++.+++|++++||+ .|++|++||++++||||
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg 89 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVS 89 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEEC
T ss_pred ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecc
Confidence 4799999999999999999999999999994 33 37999999999999999999999999 89999999999999999
Q ss_pred ccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCCC
Q 017581 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (369)
Q Consensus 95 ~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~~ 174 (369)
++|||||||++|+|||+.++.. .
T Consensus 90 ~~lLGRV~d~lG~PiD~~~~i~---------------~------------------------------------------ 112 (465)
T 3vr4_D 90 EDMIGRVFDGLGRPKDNGPEIL---------------P------------------------------------------ 112 (465)
T ss_dssp GGGTTEEEETTSCBCSCCCCCC---------------C------------------------------------------
T ss_pred hhhccceeccCCcccCCCCCCc---------------c------------------------------------------
Confidence 9999999999999999853110 0
Q ss_pred CCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCC
Q 017581 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (369)
Q Consensus 175 ~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~ 253 (369)
.++||++.++ ++++|.++++|+.||||+||+|+||+||||++|||+
T Consensus 113 ---------------------------------~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg 159 (465)
T 3vr4_D 113 ---------------------------------EKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSG 159 (465)
T ss_dssp ---------------------------------SEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEEC
T ss_pred ---------------------------------cceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCC
Confidence 1245665444 489999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcCC--C----eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHh
Q 017581 254 FGCGKTVISQALSKYSNS--D----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (369)
Q Consensus 254 sG~GKstLl~~ia~~~~~--d----~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~ 327 (369)
+|+|||+|+.+|++++.+ | +|||++||||++|+++|+++| .+.++|+||++|+||+|+|+.+|+
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~----------~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDF----------RQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHH----------HHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHH----------hhcCCccceEEEEECCCCCHHHHH
Confidence 999999999999999876 6 899999999999999999987 677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 328 ASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 328 ~a~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
++|++|+|+|||||+ +|+|||+++||+||||+||||||++||
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lg 272 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARR 272 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcC
Confidence 999999999999998 699999999999999999999999987
No 10
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=4.3e-65 Score=516.85 Aligned_cols=252 Identities=22% Similarity=0.353 Sum_probs=232.2
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCC-CCCeEEEcCCceEEec
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVEL 93 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~-~G~~V~~tg~~l~Vpv 93 (369)
.+++|+|++|.|++++++|++++++||+|+|. ++ .+.|||+++++|++.+++|++++||+ .|++|++||++++|||
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpv 84 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGV 84 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEE
T ss_pred cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEe
Confidence 46899999999999999999999999999994 33 37999999999999999999999999 8999999999999999
Q ss_pred CccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCC
Q 017581 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (369)
Q Consensus 94 G~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~ 173 (369)
|++|||||||++|+|||+.++. ..
T Consensus 85 g~~lLGRV~d~lG~PiD~~~~i---------------~~----------------------------------------- 108 (464)
T 3gqb_B 85 SKEMLGRRFNGIGKPIDGLPPI---------------TP----------------------------------------- 108 (464)
T ss_dssp CSTTTTEEEETTCCBCSSSCCC---------------CC-----------------------------------------
T ss_pred ChHhcCCEeccCCcccCCCccc---------------cC-----------------------------------------
Confidence 9999999999999999985311 00
Q ss_pred CCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecC
Q 017581 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (369)
Q Consensus 174 ~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg 252 (369)
.++||+..++ ++++|.++++||.||||+||+|+||+||||++|||
T Consensus 109 ----------------------------------~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifg 154 (464)
T 3gqb_B 109 ----------------------------------EKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFS 154 (464)
T ss_dssp ----------------------------------SEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEE
T ss_pred ----------------------------------cceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEec
Confidence 1346776444 48999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhcCC---------C----eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCC
Q 017581 253 AFGCGKTVISQALSKYSNS---------D----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (369)
Q Consensus 253 ~sG~GKstLl~~ia~~~~~---------d----~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~ 319 (369)
++|+|||+|+.+|++++++ | +|||++||||++|+++|+++| .+.++|+||++|+||+
T Consensus 155 g~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l----------~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 155 GSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF----------ERTGALSRSVLFLNKA 224 (464)
T ss_dssp ETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHH----------HHTSGGGGEEEEEEET
T ss_pred CCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHh----------hhcccccceEEEEECC
Confidence 9999999999999999866 5 899999999999999999987 6788999999999999
Q ss_pred CCCHHhHhhhhHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 320 NMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 320 ~~~~~~r~~a~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|+|+.+|+++|++|+|+|||||+ +|+|||+++||+||||+||||+|.++|
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lg 275 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAARE 275 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcC
Confidence 99999999999999999999998 699999999999999999999999987
No 11
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=4.3e-65 Score=519.09 Aligned_cols=253 Identities=21% Similarity=0.314 Sum_probs=208.3
Q ss_pred CceeEeEEEEEECcEEEEeecCCCccccEEEEc--CC-cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCCceEEec
Q 017581 17 KESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (369)
Q Consensus 17 ~~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~--~~-~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~Vpv 93 (369)
-.+.+|+|++|.|++++++|++++++||+|+|. ++ ...|||+++++|.+.+++|++++||++|++|.+||++++|||
T Consensus 10 ~~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpv 89 (469)
T 2c61_A 10 MVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPA 89 (469)
T ss_dssp ------------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC-------------CEEEBCEEEE
T ss_pred ccccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEc
Confidence 367899999999999999998899999999994 33 367999999999999999999999999999999999999999
Q ss_pred CccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCCCC
Q 017581 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (369)
Q Consensus 94 G~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~~~ 173 (369)
|++|||||||++|+|||+.++.. .
T Consensus 90 g~~lLGRV~d~lG~PiDg~~~i~---------------~----------------------------------------- 113 (469)
T 2c61_A 90 SVDLLGRILSGSGEPRDGGPRIV---------------P----------------------------------------- 113 (469)
T ss_dssp CGGGTTCEEETTSCBSSSCCCCC---------------C-----------------------------------------
T ss_pred cccceeeEEcccCCCCCCCCCCC---------------c-----------------------------------------
Confidence 99999999999999999853110 0
Q ss_pred CCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecC
Q 017581 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (369)
Q Consensus 174 ~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg 252 (369)
..+||+..++ ++++|.++++||.||||+||+|+||+||||++|||
T Consensus 114 ----------------------------------~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifg 159 (469)
T 2c61_A 114 ----------------------------------DQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFS 159 (469)
T ss_dssp ----------------------------------SEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEE
T ss_pred ----------------------------------cccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEEC
Confidence 0234565443 47899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhhcCC------CeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhH
Q 017581 253 AFGCGKTVISQALSKYSNS------DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 326 (369)
Q Consensus 253 ~sG~GKstLl~~ia~~~~~------d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r 326 (369)
++|+|||+|+.+||+++.. ++|||++||||++|+++|+++| .+.++|+||++|+||+|+|+.+|
T Consensus 160 g~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~----------~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 160 ASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDF----------EKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHH----------HHHSGGGGEEEEEEETTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHH----------HhccCccceEEEEECCCCCHHHH
Confidence 9999999999999998864 6899999999999999999997 67889999999999999999999
Q ss_pred hhhhHHHHHHHHHHH-HCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 327 EASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 327 ~~a~~~a~tiAEyfr-~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+++|++|+|+||||| ++|+|||+|+|||||||+|+||||++||
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lg 273 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARN 273 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTT
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcC
Confidence 999999999999999 5999999999999999999999999987
No 12
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=9.4e-62 Score=494.77 Aligned_cols=254 Identities=28% Similarity=0.421 Sum_probs=228.3
Q ss_pred cCceeEeEEEEEECcEEEEeec-CCCccccEEEEcC--CcEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCceEE
Q 017581 16 EKESEYGYVRKVSGPVVIADGM-NGAAMYELVRVGH--DNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (369)
Q Consensus 16 ~~~~~~G~V~~I~G~ii~v~gl-~~~~igE~v~i~~--~~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l~V 91 (369)
.....+|+|++|.|++++++|. ..+.+++.|.+.. ..+.+||++ ++++.+.+++|++++||++|++|++||+++++
T Consensus 9 ~~~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~v 88 (482)
T 2ck3_D 9 KAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRI 88 (482)
T ss_dssp ----CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEE
T ss_pred ccCCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCccee
Confidence 3455789999999999999984 3588999999852 347899999 89999999999999999999999999999999
Q ss_pred ecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccccccccCC
Q 017581 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (369)
Q Consensus 92 pvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~~~ 171 (369)
|||++|||||||++|+|||+.++ +.
T Consensus 89 pvG~~lLGRV~d~lG~PiDg~~~---------------~~---------------------------------------- 113 (482)
T 2ck3_D 89 PVGPETLGRIMNVIGEPIDERGP---------------IK---------------------------------------- 113 (482)
T ss_dssp ECSGGGBTCEECTTSCBCSSSCS---------------CC----------------------------------------
T ss_pred eccccccCCEEcccCcCcCCcCC---------------CC----------------------------------------
Confidence 99999999999999999998421 00
Q ss_pred CCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeeccccccCCCeEee
Q 017581 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (369)
Q Consensus 172 ~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~I 250 (369)
..++||++.++| +++|..+++|+.||||+||+|+||+||||++|
T Consensus 114 -----------------------------------~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I 158 (482)
T 2ck3_D 114 -----------------------------------TKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGL 158 (482)
T ss_dssp -----------------------------------CCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEE
T ss_pred -----------------------------------ccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeee
Confidence 125789987665 89999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhc---CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcc------eeEEEEeCCCC
Q 017581 251 PGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK------RTTLVANTSNM 321 (369)
Q Consensus 251 fg~sG~GKstLl~~ia~~~---~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~------~t~vv~~t~~~ 321 (369)
||++|+|||+|+++|+++. ++|++||++||||++|+++|+++| .+.++++ |+++|+||+|+
T Consensus 159 fgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~----------~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 159 FGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM----------IESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp EECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHH----------HHHTSSCSSSSCCCEEEEEECTTS
T ss_pred ecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHh----------hhccccccccCCceEEEEEECCCC
Confidence 9999999999999998864 458999999999999999999987 5666776 99999999999
Q ss_pred CHHhHhhhhHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 322 PVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
||.+|++++++|+|+|||||| +|+||||++||+||||+||||||++||
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lg 277 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 277 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcC
Confidence 999999999999999999999 999999999999999999999999987
No 13
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.2e-61 Score=495.77 Aligned_cols=250 Identities=29% Similarity=0.418 Sum_probs=227.9
Q ss_pred eEeEEEEEECcEEEEeecC--CCccccEEEEcC----C---cEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCCce
Q 017581 20 EYGYVRKVSGPVVIADGMN--GAAMYELVRVGH----D---NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPL 89 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~--~~~igE~v~i~~----~---~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~~l 89 (369)
.+|+|++|.|++++++|.. .+.+|+.|++.. + .+.+||++ ++++.+.+++|++++||++|++|.+||+++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~ 98 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL 98 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence 3699999999999999974 478999999952 2 46899999 888899999999999999999999999999
Q ss_pred EEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeeccccccccc
Q 017581 90 SVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVA 169 (369)
Q Consensus 90 ~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~i~ 169 (369)
+||||++|||||+|++|+|||+.++ +.
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~---------------i~-------------------------------------- 125 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRP---------------VD-------------------------------------- 125 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSC---------------CC--------------------------------------
T ss_pred eEecCccceeeEEcccccCCCCcCC---------------cC--------------------------------------
Confidence 9999999999999999999998421 00
Q ss_pred CCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCCC-ccccccccceeccCceeeeccccccCCCeE
Q 017581 170 LPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTC 248 (369)
Q Consensus 170 ~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~GQr~ 248 (369)
..++||++.++| +++|.++++||.||||+||+|+||+||||+
T Consensus 126 -------------------------------------~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~ 168 (498)
T 1fx0_B 126 -------------------------------------TRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKI 168 (498)
T ss_dssp -------------------------------------CSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCE
T ss_pred -------------------------------------CCceeccccCCCchhhhcccccccccceeEeeeecccccCCeE
Confidence 025789987665 999999999999999999999999999999
Q ss_pred eecCCCCCChHHHHHHHHhhc---CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcc-------eeEEEEeC
Q 017581 249 AIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK-------RTTLVANT 318 (369)
Q Consensus 249 ~Ifg~sG~GKstLl~~ia~~~---~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~-------~t~vv~~t 318 (369)
+|||++|+|||+|+++|+++. ++|++||++||||++|+++|+++| .+.++++ |+++|+||
T Consensus 169 gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~----------~~~~~l~~~~l~~~rtvvV~~t 238 (498)
T 1fx0_B 169 GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEM----------KESGVINEQNIAESKVALVYGQ 238 (498)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHH----------HHTTSSCSSTTCCCCEEEEEEC
T ss_pred EeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhh----------hcccccccccccccceEEEEeC
Confidence 999999999999999998873 448999999999999999999997 5667776 99999999
Q ss_pred CCCCHHhHhhhhHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 319 SNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 319 ~~~~~~~r~~a~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
+|+||.+|++++++|+|+|||||| +|+||||++||+||||+|+||||++||
T Consensus 239 ~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lg 290 (498)
T 1fx0_B 239 MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLG 290 (498)
T ss_dssp TTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999 999999999999999999999999987
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=2.1e-55 Score=448.51 Aligned_cols=250 Identities=31% Similarity=0.466 Sum_probs=228.0
Q ss_pred eEeEEEEEECcEEEEeecC--CCccccEEEEcC----C-----cEEEEEEE-EeCCEEEEEEecCCCCCCCCCeEEEcCC
Q 017581 20 EYGYVRKVSGPVVIADGMN--GAAMYELVRVGH----D-----NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHK 87 (369)
Q Consensus 20 ~~G~V~~I~G~ii~v~gl~--~~~igE~v~i~~----~-----~~~geVi~-i~~d~v~l~~~~~t~Gi~~G~~V~~tg~ 87 (369)
.+|+|++|.|++++++|.. .+.+||+|.+.. + ...+||++ ++++.+.+++|+++.||++|++|++||+
T Consensus 2 ~~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~ 81 (473)
T 1sky_E 2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGA 81 (473)
T ss_dssp CEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEE
T ss_pred CceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCC
Confidence 3699999999999999973 479999999953 2 36899998 9999999999999999999999999999
Q ss_pred ceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeeccccccc
Q 017581 88 PLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHH 167 (369)
Q Consensus 88 ~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~~~~ 167 (369)
++++|||++|||||+|++|+|||+.++ +.
T Consensus 82 ~~~vpvg~~llGrv~d~lG~piD~~g~---------------i~------------------------------------ 110 (473)
T 1sky_E 82 PISVPVGQVTLGRVFNVLGEPIDLEGD---------------IP------------------------------------ 110 (473)
T ss_dssp ECEEECSGGGTTCEECTTSCBCSSSCC---------------CC------------------------------------
T ss_pred cceeeccccceeeEEeecCCccCcccc---------------cC------------------------------------
Confidence 999999999999999999999998421 00
Q ss_pred ccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeec-cceeccCCCC-ccccccccceeccCceeeeccccccCC
Q 017581 168 VALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTML-QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLG 245 (369)
Q Consensus 168 i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~-~~~pv~~~~~-~~~r~~~~~~l~TGi~aID~l~pi~~G 245 (369)
.. ++||++.++| +++|.++++|+.||||+||.|+|+++|
T Consensus 111 ---------------------------------------~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kG 151 (473)
T 1sky_E 111 ---------------------------------------ADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKG 151 (473)
T ss_dssp ---------------------------------------TTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETT
T ss_pred ---------------------------------------CCceeecccccCcchhhhcccCccccccchHHHHHhhhccC
Confidence 01 4689987665 899999999999999999999999999
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc---CCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 322 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~---~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~ 322 (369)
||++|||+||+|||||+++|+++. ..+++||++||+|.+|+++|+++| .+.++|+|+++|++++++|
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l----------~~~~~l~~tvvv~~~~~d~ 221 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEM----------KDSGVISKTAMVFGQMNEP 221 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHH----------HHTSGGGGEEEEEECTTSC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHh----------hhcCCcceeEEEEEcCCCC
Confidence 999999999999999999988764 347899999999999999999886 5678999999999999999
Q ss_pred HHhHhhhhHHHHHHHHHHHH-CCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 323 VAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 323 ~~~r~~a~~~a~tiAEyfr~-~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
|..|++++++++++||||++ +|+|||+++||+||||+||||+|.+||
T Consensus 222 pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~g 269 (473)
T 1sky_E 222 PGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLG 269 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcC
Confidence 99999999999999999999 899999999999999999999999987
No 15
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=1.8e-43 Score=359.12 Aligned_cols=250 Identities=25% Similarity=0.394 Sum_probs=222.0
Q ss_pred ceeEeEEEEEECcEEEEeecCCCccccEEEEcC--C----cEEEEEEEEeCCEEEEEEecCCCCCCCCCeEEEcCC----
Q 017581 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH--D----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHK---- 87 (369)
Q Consensus 18 ~~~~G~V~~I~G~ii~v~gl~~~~igE~v~i~~--~----~~~geVi~i~~d~v~l~~~~~t~Gi~~G~~V~~tg~---- 87 (369)
.+.+|+|++|.|++++++|+ ++++||+|+|.. + .+.|||+++++|.+.+++|++++||++|+.|.+||+
T Consensus 7 ~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~ 85 (438)
T 2dpy_A 7 VRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDG 85 (438)
T ss_dssp CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTTEEEEEC------
T ss_pred cceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCCCEEEECCCcccc
Confidence 45689999999999999998 899999999963 2 478999999999999999999999999999999999
Q ss_pred ---ceEEecCccccceeecccCcccccccccCCcccccCCCCCCCCCcCcccccccccccCCccccCCcceeeeeecccc
Q 017581 88 ---PLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLM 164 (369)
Q Consensus 88 ---~l~VpvG~~LLGRVlDglG~PLDg~~~~~~~~~~~~g~~~~~~~~~~~~~f~p~~~~~g~~v~~g~i~g~~~e~~~~ 164 (369)
++++|+|+++||||+|++|+|+|+.++ +..
T Consensus 86 ~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~---------------~~~-------------------------------- 118 (438)
T 2dpy_A 86 LQSGKQLPLGPALLGRVLDGGGKPLDGLPA---------------PDT-------------------------------- 118 (438)
T ss_dssp ----CEEECSGGGTTEEECTTCCBSSSSCC---------------CCC--------------------------------
T ss_pred ccccEEEEcchhhhhhhhhccCCccCCCCC---------------ccc--------------------------------
Confidence 999999999999999999999997421 100
Q ss_pred cccccCCCCCCCceEEeccCCcccccceEEEEEeecceeeeeeccceeccCCC-CccccccccceeccCceeeecccccc
Q 017581 165 QHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSV 243 (369)
Q Consensus 165 ~~~i~~~~~~~~~v~~~~~~g~~~~~~~v~~~~~~~~~~~~~m~~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~ 243 (369)
..+||++.++ ++++++.++++|.||+++||.++||+
T Consensus 119 -------------------------------------------~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~ 155 (438)
T 2dpy_A 119 -------------------------------------------LETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVG 155 (438)
T ss_dssp -------------------------------------------SCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCB
T ss_pred -------------------------------------------cccccccCCCCCceEEeccceecCCCceEEeeeEEec
Confidence 1246776444 58999999999999999999999999
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCH
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV 323 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~ 323 (369)
+||+++|||++|||||||+++|+++.+++..++.++|+|++++.++.+.+ .+...+.+++.+++++++++
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~----------~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENI----------LGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTT----------THHHHHHTEEEEEECTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhh----------ccccccCceEEEEECCCCCH
Confidence 99999999999999999999999999999989999999999999987652 23455789999999999999
Q ss_pred HhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhcc
Q 017581 324 AAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368 (369)
Q Consensus 324 ~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~l 368 (369)
..++.+++.++++||||++++++|+.++|++++|+.++|++|..+
T Consensus 226 ~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl 270 (438)
T 2dpy_A 226 LLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAI 270 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998764
No 16
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=3e-38 Score=314.65 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=124.6
Q ss_pred cccccccc-ceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhc---CCCe-EEEEeecccchhhhHHhhhc
Q 017581 219 VSSKLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 219 ~~~r~~~~-~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~---~~d~-vV~~~iGer~~ev~~~~~~f 293 (369)
+++|..++ +++.||+|+||+|+||+||||++|||++|+|||+|+.+|+++. ++|+ |||++||||++|+++|+++|
T Consensus 148 P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~ 227 (427)
T 3l0o_A 148 PRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST 227 (427)
T ss_dssp CCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC
T ss_pred chhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHh
Confidence 46788887 9999999999999999999999999999999999999999874 4564 79999999999999999764
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
. .+||+||+|+||.+|+++|++|+++|||||++|+|||+++||+||||+||||+|..+|
T Consensus 228 ----------~-------G~VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~G 286 (427)
T 3l0o_A 228 ----------N-------AIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSG 286 (427)
T ss_dssp ----------C-------SEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCS
T ss_pred ----------C-------CeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcC
Confidence 3 2899999999999999999999999999999999999999999999999999998876
No 17
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=2e-35 Score=291.72 Aligned_cols=150 Identities=31% Similarity=0.467 Sum_probs=137.9
Q ss_pred cceeccCCC-CccccccccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhh
Q 017581 209 QAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMA 287 (369)
Q Consensus 209 ~~~pv~~~~-~~~~r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~ 287 (369)
++||++.++ ++++|+.++++|.||+++||.++||++||+++|||++|+|||||+++|+++.+++..++.++|++.++++
T Consensus 34 ~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~ 113 (347)
T 2obl_A 34 FERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN 113 (347)
T ss_dssp EEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH
T ss_pred CcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH
Confidence 467887666 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhc
Q 017581 288 EVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGR 367 (369)
Q Consensus 288 ~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~ 367 (369)
+++..+ +...+++++++++++++++.+|+.+++.++++||||+++|+||++++|++++|+.++|++|..
T Consensus 114 ~~i~~~-----------~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la 182 (347)
T 2obl_A 114 EFLALL-----------PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA 182 (347)
T ss_dssp HHHTTS-----------CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHhh-----------hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH
Confidence 987642 224678999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 017581 368 LG 369 (369)
Q Consensus 368 lg 369 (369)
++
T Consensus 183 l~ 184 (347)
T 2obl_A 183 SG 184 (347)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 18
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=7.1e-35 Score=290.73 Aligned_cols=133 Identities=23% Similarity=0.228 Sum_probs=122.5
Q ss_pred ccccccc----ceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhc---CCCe-EEEEeecccchhhhHHhh
Q 017581 220 SSKLAAD----TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLM 291 (369)
Q Consensus 220 ~~r~~~~----~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~---~~d~-vV~~~iGer~~ev~~~~~ 291 (369)
.+|..++ +|+.||+|+||.++||++|||++|||++|||||||+++|+++. ++|+ |||++||||++|+++|++
T Consensus 145 ~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~ 224 (422)
T 3ice_A 145 NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR 224 (422)
T ss_dssp CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHT
T ss_pred CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHH
Confidence 4555666 7999999999999999999999999999999999999998764 4565 889999999999999987
Q ss_pred hcccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHHHHHhhccC
Q 017581 292 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLG 369 (369)
Q Consensus 292 ~f~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~rEiS~~lg 369 (369)
.| +++||+||+|+||.+|++++++|+++|||||++|+|||+++||+||||+||||+|..+|
T Consensus 225 ~~-----------------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~G 285 (422)
T 3ice_A 225 LV-----------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 285 (422)
T ss_dssp TC-----------------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSS
T ss_pred Hh-----------------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcC
Confidence 53 37999999999999999999999999999999999999999999999999999999886
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.63 E-value=1.8e-09 Score=106.96 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=75.2
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEeecc----c--chhhhHHhhhc
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVGCGE----R--GNEMAEVLMDF 293 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~iGe----r--~~ev~~~~~~f 293 (369)
+.++..| .+..+++.+ +.+.+|+.++|+||||||||||+++|++...++ .|.+.+.-- . ...-+.+...|
T Consensus 8 ~~ls~~y-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 8 GHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EEEEEEE-TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEe
Confidence 3445545 346789888 999999999999999999999999999998774 344432111 0 01112333333
Q ss_pred ccccccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHHHHH-HHHhh
Q 017581 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL-REISG 366 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A~A~-rEiS~ 366 (369)
|++.++++.+|..|.+......+.........+.|.+...| |..+++.+ +++|+
T Consensus 87 ----------Q~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~g---------L~~~~~r~~~~LSG 141 (359)
T 3fvq_A 87 ----------QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTG---------ISELAGRYPHELSG 141 (359)
T ss_dssp ----------TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHT---------CGGGTTSCGGGSCH
T ss_pred ----------CCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC---------CchHhcCChhhCCH
Confidence 66666666666655544322222222333445666666667 54444444 55554
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.63 E-value=1.5e-09 Score=107.76 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=51.0
Q ss_pred ccceeccC--CCCccccccccceeccC---ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 208 LQAWPVRT--PRPVSSKLAADTPLLTG---QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 208 ~~~~pv~~--~~~~~~r~~~~~~l~TG---i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
.++||... ..+.++-+.++..|..+ ..+++.+ +.|.+|+.++|+|++|||||||+++|++...++ .|.+.
T Consensus 11 ~~~~~~~~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~ 88 (366)
T 3tui_C 11 HHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD 88 (366)
T ss_dssp ------------CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CccCCCCCCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 45676532 23577778888888653 6799999 999999999999999999999999999998774 45444
No 21
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.53 E-value=8.4e-09 Score=102.83 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=67.7
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe--EEEEeecccc----hhhhHHhhhcccc
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT--VVYVGCGERG----NEMAEVLMDFPQL 296 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~--vV~~~iGer~----~ev~~~~~~f~~~ 296 (369)
.++..| .+..+++.+ +.+.+|+.++|+|+||||||||+++|++...++. |.+. |+.- ..-+.+...|
T Consensus 8 ~l~~~y-g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~--G~~~~~~~~~~r~ig~Vf--- 81 (381)
T 3rlf_A 8 NVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAERGVGMVF--- 81 (381)
T ss_dssp EEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET--TEECTTCCGGGSCEEEEC---
T ss_pred eEEEEE-CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEEC--CEECCCCCHHHCCEEEEe---
Confidence 444445 356789999 9999999999999999999999999999988753 4443 3211 1112233333
Q ss_pred cccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCC
Q 017581 297 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG 344 (369)
Q Consensus 297 ~~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G 344 (369)
|++.+.++.+|..|.+......+.........+.|.+...|
T Consensus 82 -------Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~ 122 (381)
T 3rlf_A 82 -------QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122 (381)
T ss_dssp -------TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred -------cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 56666666555555443211112222333455667777777
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.45 E-value=1.3e-08 Score=101.13 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=43.3
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
+.++..|. +..+++.+ +.+.+|+.++|+|+||||||||+++|++...++ .+.+.
T Consensus 15 ~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 71 (372)
T 1v43_A 15 ENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71 (372)
T ss_dssp EEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEEC
Confidence 34455452 35688888 999999999999999999999999999998774 35443
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.43 E-value=8.1e-09 Score=102.05 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=40.8
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
.++..|..+..+++.+ +.+.+|+.++|+|++|||||||+++|++...++.
T Consensus 19 ~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 69 (355)
T 1z47_A 19 GVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK 69 (355)
T ss_dssp EEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 4444442334688888 9999999999999999999999999999987743
No 24
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.40 E-value=5e-07 Score=80.93 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=38.4
Q ss_pred eeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 228 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 228 ~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+.||+..+|.++ -+.+|+.++|+|++|+|||||+++|++..
T Consensus 6 ~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 6 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999887 79999999999999999999999998743
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.40 E-value=1.5e-08 Score=100.45 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=39.1
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEE
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVY 276 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~ 276 (369)
+..+++.+ +.+.+|+.++|+|++|||||||+++|++...++ .+.+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 34688888 999999999999999999999999999998774 3444
No 26
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.39 E-value=1.5e-08 Score=100.30 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=42.2
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
.++..|. +..+++.+ +.+.+|+.++|+|++|||||||+++|++...++ .+.+.
T Consensus 8 ~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (359)
T 2yyz_A 8 NLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63 (359)
T ss_dssp EEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence 3444442 35688888 999999999999999999999999999998774 35443
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.38 E-value=1.5e-08 Score=100.61 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=36.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..+++.+ +.+.+|+.++|+|+||||||||+++|++...++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 4688888 999999999999999999999999999998774
No 28
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.37 E-value=7.2e-07 Score=80.91 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=36.9
Q ss_pred eeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHH
Q 017581 228 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 228 ~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
.+.||+..+|.++ -+.+|+.++|+|++|+|||||+++|+
T Consensus 11 ~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3899999999997 79999999999999999999999988
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.32 E-value=2e-08 Score=99.05 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=36.2
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
+++.+ +.+.+|+.++|+|++|||||||+++|++...++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 59 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 88888 9999999999999999999999999999987743
No 30
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.23 E-value=3.8e-06 Score=74.83 Aligned_cols=61 Identities=28% Similarity=0.303 Sum_probs=46.1
Q ss_pred eeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEeecccchhhhH
Q 017581 228 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGERGNEMAE 288 (369)
Q Consensus 228 ~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~iGer~~ev~~ 288 (369)
.+.||++.+|.++ -+.+|+.++|.|++|+|||||+.+|+.... .+-++|........+..+
T Consensus 4 ~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp EECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHH
T ss_pred cccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHH
Confidence 4799999999997 599999999999999999999999886542 234555554443333333
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.22 E-value=9.1e-08 Score=90.26 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=43.9
Q ss_pred ccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 221 SKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 221 ~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
+-..++..+. +..+++.+ +.+.+|+.++|+|++|||||||++.|++...++ .|.|.
T Consensus 8 ~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 8 HVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66 (262)
T ss_dssp EEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3334444442 34688888 999999999999999999999999999998774 45443
No 32
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.21 E-value=3.8e-08 Score=96.90 Aligned_cols=39 Identities=28% Similarity=0.429 Sum_probs=36.2
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
+++.+ +.+.+|+.++|+|++|||||||+++|++...++.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC
Confidence 78888 9999999999999999999999999999987743
No 33
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.13 E-value=1.1e-07 Score=87.46 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=39.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.+.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 4678888 999999999999999999999999999988774 45443
No 34
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.08 E-value=4.2e-06 Score=74.39 Aligned_cols=49 Identities=29% Similarity=0.422 Sum_probs=41.4
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEe
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVG 278 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~ 278 (369)
+.||+..+|.++. +.+|+.++|.|++|+|||||+.+++. ....-++|..
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~ 52 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVD 52 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEE
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEE
Confidence 6899999999975 99999999999999999999999988 3233455554
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.07 E-value=4e-07 Score=90.91 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=46.8
Q ss_pred ccccccccceec-cCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEEE
Q 017581 219 VSSKLAADTPLL-TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVYV 277 (369)
Q Consensus 219 ~~~r~~~~~~l~-TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~~ 277 (369)
.++-+.++..|. .+..+++.+ ++|.+|++++|+|+||||||||+++|++.... +.|.+.
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~ 80 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQID 80 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEES
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEEC
Confidence 455566666675 356789999 99999999999999999999999999987642 345444
No 36
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.02 E-value=3.2e-06 Score=80.46 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=44.7
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
++-+.++..|..+..+++.+ +++.+|+.++|+|++|+|||||++.|++...++.
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 34445555565556699999 9999999999999999999999999999887743
No 37
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.01 E-value=4.7e-07 Score=85.27 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=43.0
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
++-..++..+. +..+++.+ +.+.+|+.++|+|++|+|||||+++|++...++.
T Consensus 16 l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~ 69 (256)
T 1vpl_A 16 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69 (256)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 34445555553 35688888 9999999999999999999999999999887743
No 38
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.97 E-value=1.2e-05 Score=72.41 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=38.7
Q ss_pred ceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 227 ~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.+.||+..+|.++ -+.+|+.++|.|++|+|||||+.+++.+
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999998 5999999999999999999999999884
No 39
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.94 E-value=6.7e-06 Score=77.70 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=46.5
Q ss_pred ccccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 219 VSSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 219 ~~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.++-..++..+. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.|.|.+
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 344455555553 46789999 99999999999999999999999999998766 4555543
No 40
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.92 E-value=6e-06 Score=77.36 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=42.0
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEE
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVY 276 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~ 276 (369)
.++..+. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.+
T Consensus 12 ~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 12 NIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp EEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4444442 34688988 999999999999999999999999999988774 4444
No 41
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.90 E-value=6.8e-06 Score=76.09 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=37.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++.
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 59 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 4689888 9999999999999999999999999999987743
No 42
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.88 E-value=1.7e-05 Score=77.57 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=40.0
Q ss_pred cceeccCceeeecc--ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 226 DTPLLTGQRVLDAL--FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 226 ~~~l~TGi~aID~l--~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
...+.||+..+|.+ ..+.+|+.+.|+|++|+|||||+.+++...
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999 578899999999999999999999998775
No 43
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.84 E-value=8.6e-06 Score=78.73 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=47.0
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
++-+.++..+..+..+++.+ ++|.+|++++|+|++|+|||||++.|++...++ .|.+.+
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G 115 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC
Confidence 34445555555566789999 999999999999999999999999999988774 455543
No 44
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.80 E-value=1.3e-05 Score=74.73 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=39.6
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
+..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.|.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 35688888 999999999999999999999999999998764 45443
No 45
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.80 E-value=1.3e-05 Score=76.32 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=44.1
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEE
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVY 276 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~ 276 (369)
++-..++..+. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.|
T Consensus 22 l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 22 IQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 33444555453 34688888 999999999999999999999999999988774 3444
No 46
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.79 E-value=1.3e-05 Score=74.28 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=38.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~ 276 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4578888 999999999999999999999999999988764 4544
No 47
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.78 E-value=1.7e-05 Score=74.90 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=44.4
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
++-+.++..+. +..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.|.
T Consensus 25 l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 84 (263)
T 2olj_A 25 IDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84 (263)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Confidence 33344554442 34688888 999999999999999999999999999998774 45443
No 48
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.78 E-value=1.4e-05 Score=74.14 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=38.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
-.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 62 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEET
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 4578888 99999999999999999999999999998765 455554
No 49
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.78 E-value=1.7e-05 Score=75.05 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=39.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .|.|.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~ 79 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 5678888 999999999999999999999999999998764 45443
No 50
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.77 E-value=1.4e-05 Score=73.15 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=39.9
Q ss_pred cccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 224 AADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.++..+. + .+++.+ +.+.+|+.++|+|++|+|||||++.|++...++
T Consensus 15 ~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 15 DLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4444443 3 788888 999999999999999999999999999988774
No 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.73 E-value=1.8e-05 Score=72.89 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=36.5
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 4578888 999999999999999999999999999988763
No 52
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=74.03 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=35.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4578888 99999999999999999999999999998765
No 53
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.71 E-value=1.9e-05 Score=74.50 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=39.9
Q ss_pred cccccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 220 SSKLAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++-..++..+ .+..+++.+ +.+.+|+.++|+|++|+|||||++.|++.
T Consensus 21 l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 21 LSIKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4444555545 345688988 99999999999999999999999999997
No 54
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.69 E-value=2.7e-05 Score=73.28 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=38.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVY 276 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~ 276 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++ .+.+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 4578888 999999999999999999999999999988764 4444
No 55
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=6.4e-05 Score=74.14 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=43.6
Q ss_pred ceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc--CCCeEEEEe
Q 017581 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVG 278 (369)
Q Consensus 227 ~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~~d~vV~~~ 278 (369)
..+.||+..+|.++. +.+|+-+.|+|++|+|||||+.+++... ..+.++|..
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 458999999999988 8899999999999999999999888654 224466654
No 56
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.67 E-value=2.3e-05 Score=73.40 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=37.1
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
+..+++.+ +.+.+|+.++|+|++|+|||||++.|++...++
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34678888 999999999999999999999999999988764
No 57
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=0.00013 Score=70.93 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=39.2
Q ss_pred cceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 226 ~~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
...+.||+..+|.++ -+.+|+-+.|+|++|+|||+|+.+++.+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999998 5899999999999999999999988875
No 58
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.65 E-value=3.1e-05 Score=72.69 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=37.7
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVYV 277 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~~ 277 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~ 79 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIG 79 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEEC
Confidence 578888 99999999999999999999999999998654 445443
No 59
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.61 E-value=0.00011 Score=70.59 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=40.0
Q ss_pred ccceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 225 ADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
....+.||+..+|.++ -+.+|+-+.|+|++|+|||+|+.+++.+.
T Consensus 85 ~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 85 NVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3456899999999997 68999999999999999999999888653
No 60
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.58 E-value=9.1e-05 Score=72.32 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=66.6
Q ss_pred eeccCceeeecccc------ccCCCeEeecCCCCCChHHHHHHHHhhc-C---CCeEEEEeecccchhhhHHhhhccccc
Q 017581 228 PLLTGQRVLDALFP------SVLGGTCAIPGAFGCGKTVISQALSKYS-N---SDTVVYVGCGERGNEMAEVLMDFPQLT 297 (369)
Q Consensus 228 ~l~TGi~aID~l~p------i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~---~d~vV~~~iGer~~ev~~~~~~f~~~~ 297 (369)
.+.||+..+|.++- +.+| ++.|+|++|+|||||+.+++.+. . .+.++|.- +|..-.- ...+.| .
T Consensus 6 risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId-~E~s~~~-~ra~~l---G 79 (333)
T 3io5_A 6 VVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD-SEFGITP-AYLRSM---G 79 (333)
T ss_dssp CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE-SSCCCCH-HHHHHT---T
T ss_pred EecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-ccchhhH-HHHHHh---C
Confidence 38999999999998 8899 99999999999999999765433 2 34677866 4433221 223332 1
Q ss_pred ccCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHH--HCCCcEEEEecchHHHH
Q 017581 298 MTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR--DMGYNVSMMADSTSRWA 358 (369)
Q Consensus 298 ~~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr--~~G~~VLli~Dsltr~A 358 (369)
+ . +++.. +... + ..++. ++.+++.+. ..+.--|+|+||++.+.
T Consensus 80 --v----d---~d~ll-v~~~-~--~~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 80 --V----D---PERVI-HTPV-Q--SLEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --C----C---GGGEE-EEEC-S--BHHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --C----C---HHHeE-EEcC-C--CHHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 1 0 23333 3322 1 12322 133445542 44667889999998663
No 61
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.57 E-value=3.1e-05 Score=70.37 Aligned_cols=36 Identities=17% Similarity=-0.121 Sum_probs=25.0
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..++.+ +++.+|+.++|+|+||+|||||+++|++..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456777 999999999999999999999999999876
No 62
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.53 E-value=0.00017 Score=72.18 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=38.5
Q ss_pred cccceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHH
Q 017581 224 AADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
.....+.||+..+|.++ -|.+|+.+.|+|++|||||||+.+++
T Consensus 155 ~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 155 SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 33456899999999997 78999999999999999999999765
No 63
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.52 E-value=4e-05 Score=71.72 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=37.1
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC-CeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS-DTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d~vV~ 276 (369)
.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+ +.+.+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~ 58 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEE
Confidence 467777 99999999999999999999999999998766 44444
No 64
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.52 E-value=8.2e-05 Score=67.04 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=47.8
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHhhc--C-CCeEEEEeecccchhhhHHh
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAEVL 290 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~-~d~vV~~~iGer~~ev~~~~ 290 (369)
+.||+..+|.++. +.+|+-+.|.|++|+|||+|+.+++.+. + ...++|....+...++.+..
T Consensus 12 i~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~ 78 (251)
T 2zts_A 12 VKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREM 78 (251)
T ss_dssp ECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH
T ss_pred ecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHH
Confidence 8999999999997 9999999999999999999999876432 2 23466665566555554443
No 65
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.51 E-value=5.1e-05 Score=70.72 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=37.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh--cCC--CeEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY--SNS--DTVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~--~~~--d~vV~~ 277 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++. ..+ +.+.+.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 4678888 99999999999999999999999999996 333 445543
No 66
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.51 E-value=0.00019 Score=70.37 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=42.7
Q ss_pred ceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc--CCCeEEEEee
Q 017581 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGC 279 (369)
Q Consensus 227 ~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~~d~vV~~~i 279 (369)
..+.||+..+|.++. +.+|..+.|.|++|+|||||+.+++.+. ....++|...
T Consensus 40 ~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 40 SVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 458999999999976 7799999999999999999999877543 2234556553
No 67
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.50 E-value=3.5e-05 Score=72.56 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=38.6
Q ss_pred eecc-Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 228 PLLT-GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 228 ~l~T-Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-+.| |+.++|.+ +.+.+|+.++|.|++|+|||||+++|+...
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3788 99999988 889999999999999999999999998765
No 68
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.48 E-value=6.5e-05 Score=70.84 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=35.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
-.+++.+ +.+. |++++|+|++|+|||||++.|++.. ++.
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 3578888 9999 9999999999999999999999988 743
No 69
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.46 E-value=4.7e-05 Score=72.85 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=35.8
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.+.+|+.++|+|++|+|||||++.|++...+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3578888 99999999999999999999999999998765
No 70
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.43 E-value=8.6e-05 Score=64.68 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=29.8
Q ss_pred cccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 239 l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
|+.+.+|+.++|+|++|+|||||++.|++..+.+.+.+
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i 40 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHF 40 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEE
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEE
Confidence 56789999999999999999999999998754454433
No 71
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00011 Score=66.15 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=45.7
Q ss_pred eeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEeecccchhhhHHh
Q 017581 228 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCGERGNEMAEVL 290 (369)
Q Consensus 228 ~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~iGer~~ev~~~~ 290 (369)
.+.||+..+|.++ -+.+|+.++|.|++|+|||||+.+++.+. .. .-++|...-+...+..+..
T Consensus 4 ~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp EECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHH
T ss_pred cccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHH
Confidence 4789999999996 58899999999999999999988776432 22 2355655444334444433
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.39 E-value=8e-05 Score=66.59 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=24.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++.+|+.++|+|++|||||||+++|++..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 389999999999999999999999998765
No 73
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=0.00028 Score=67.42 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=38.8
Q ss_pred cceeccCceeeeccc--cccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 226 ~~~l~TGi~aID~l~--pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
...+.||+..+|.++ -+.+|+-+.|.|++|+|||+|+.+++.+
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999998 5889999999999999999999988764
No 74
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.37 E-value=7e-05 Score=65.31 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=33.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+++.+ +.+.+|+.++|+|++|+|||||++.|++..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467777 899999999999999999999999999876
No 75
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.32 E-value=0.00016 Score=67.07 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.5
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
++.+ +.+.+ +.++|+|++|+|||||++.|++...++
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 7777 99999 999999999999999999999998774
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.30 E-value=0.0001 Score=71.13 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=35.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~v 274 (369)
..+++.+ +.|.+|++++|+|++|+|||||++.|++.. .+.|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I 154 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV 154 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence 3577777 999999999999999999999999999887 5554
No 77
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.28 E-value=0.00012 Score=75.09 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=40.7
Q ss_pred cccccccceeccCceeeecc-c-cccCCCeEeecCCCCCChHHHHHH--HHhhcC
Q 017581 220 SSKLAADTPLLTGQRVLDAL-F-PSVLGGTCAIPGAFGCGKTVISQA--LSKYSN 270 (369)
Q Consensus 220 ~~r~~~~~~l~TGi~aID~l-~-pi~~GQr~~Ifg~sG~GKstLl~~--ia~~~~ 270 (369)
++.+.+ +.+.||+.++|.+ + .+.+|+.++|+|++|||||||+++ +++...
T Consensus 13 ~~~~~~-~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 13 SEHQAI-AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp -CCSSC-CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred cccccc-ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 344444 4488999999998 8 999999999999999999999998 455544
No 78
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.00056 Score=67.21 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=42.3
Q ss_pred ceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEe
Q 017581 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVG 278 (369)
Q Consensus 227 ~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~ 278 (369)
..+.||+..+|.++. +.+|.-+.|.|++|+|||||+.+++.+. .. ..++|.-
T Consensus 42 ~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 42 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458999999999987 8899999999999999999999877543 22 2355554
No 79
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.27 E-value=0.00016 Score=75.58 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=43.9
Q ss_pred ccccceeccCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 223 LAADTPLLTGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 223 ~~~~~~l~TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
+.++..+..+..+++.+ +.+.+|++++|+|++|+|||||++.|++..+++ .+.+.+
T Consensus 358 ~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 358 KNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp EEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 34444444445688888 999999999999999999999999999998774 455443
No 80
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.26 E-value=0.00013 Score=67.08 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=25.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+++.+ +++.+|..++|.|++|+|||||+++|++..
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577888 999999999999999999999999998753
No 81
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.22 E-value=0.00021 Score=74.33 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=43.0
Q ss_pred cccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEe
Q 017581 224 AADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVG 278 (369)
Q Consensus 224 ~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~ 278 (369)
.++..+..+ -.+++.+ +.+.+|++++|+|++|+|||||++.|++..++ |.+.+.+
T Consensus 346 ~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 344444332 4578888 99999999999999999999999999998766 5565544
No 82
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.20 E-value=0.00019 Score=63.12 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=25.1
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+.+|+.++|+|++|+|||||+++|++..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999999874
No 83
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.19 E-value=0.00023 Score=74.01 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=42.8
Q ss_pred cccceeccC-ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 224 AADTPLLTG-QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 224 ~~~~~l~TG-i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
.++..+..+ -.+++.+ +.+.+|++++|+|++|+|||||++.|++..+++ .+.+.+
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 344434322 4678888 999999999999999999999999999988774 454443
No 84
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.15 E-value=0.0003 Score=72.69 Aligned_cols=51 Identities=20% Similarity=0.067 Sum_probs=39.2
Q ss_pred cccccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 222 r~~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
++.++..|.....+++.+..+.+|++++|+|++|+|||||++.|++...++
T Consensus 24 ~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~ 74 (538)
T 1yqt_A 24 EEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN 74 (538)
T ss_dssp CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred hcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345666563222366666578999999999999999999999999977553
No 85
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.11 E-value=0.00021 Score=74.26 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=42.9
Q ss_pred cccceecc-Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 224 AADTPLLT-GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 224 ~~~~~l~T-Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
.++..+.. +..+++.+ +.+.+|++++|+|++|+|||||++.|++..+++ .+.+.+
T Consensus 344 ~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 344 HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp EEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred EEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 33333433 34688888 999999999999999999999999999988774 454443
No 86
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.10 E-value=0.0009 Score=66.02 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=43.6
Q ss_pred cceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc--CCCeEEEEeec
Q 017581 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCG 280 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~~d~vV~~~iG 280 (369)
...+.||+..+|.++. +.+|.-+.|.|++|+|||+|+..++.+. ....++|.-..
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3458999999999987 7899999999999999999999877543 22345555533
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.07 E-value=0.00033 Score=72.94 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=38.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEE
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYV 277 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~ 277 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++..+++ .+.+.
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 404 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEET
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 3578888 999999999999999999999999999998774 45443
No 88
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.04 E-value=0.00032 Score=62.20 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=24.7
Q ss_pred eccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 229 l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+.++--..+.+++..+|+.++|.|++|+|||||++.|++..
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 55666666777888899999999999999999999998765
No 89
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.02 E-value=0.00043 Score=60.72 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=26.4
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.+.+|..++|.|++|+|||||+++|++...+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999987633
No 90
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.00033 Score=72.97 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=43.3
Q ss_pred ccccceecc-Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 223 LAADTPLLT-GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 223 ~~~~~~l~T-Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
+.++..+.. +-.+++.+ +++.+|++++|+|++|+|||||++.|++..+++ .+.+.+
T Consensus 345 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp EEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred EEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 344443432 34688888 999999999999999999999999999988774 454443
No 91
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.00 E-value=0.00035 Score=60.76 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=23.6
Q ss_pred ccccCCCeEeecCCCCCChHHHHHH
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQA 264 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ 264 (369)
+.+.+|+.++|+|++|+|||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 6789999999999999999999994
No 92
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00052 Score=72.12 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=38.2
Q ss_pred ccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 225 ADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
++..+..+--.++.+..+.+|+.++|+|++|+|||||++.|++...++
T Consensus 83 ~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 83 VTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp EEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred eEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 334444344467777788999999999999999999999999987663
No 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.96 E-value=0.00038 Score=62.21 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=26.4
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+|+.++|+|++|+|||||++.|++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999988754
No 94
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.96 E-value=0.00042 Score=78.78 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=47.2
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecccchhhhHHh
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMAEVL 290 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGer~~ev~~~~ 290 (369)
...+++.+ ++|.+||+++|+|++|+|||||++.+.+..++ |.|.+.++--+.-...++.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 34688888 99999999999999999999999999998876 6677776655443444443
No 95
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.93 E-value=0.0003 Score=65.71 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=38.9
Q ss_pred cccceeccCceeeeccc-cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 224 AADTPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~-pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
...+.+.||+..+|.++ -+.+|+.++|+|++|+|||||+.+++...
T Consensus 8 ~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 8 NILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp CHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44566899999999874 47799999999999999999999887543
No 96
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.91 E-value=0.00028 Score=63.89 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=21.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHH-hhc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALS-KYS 269 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia-~~~ 269 (369)
+.+.+|+.++|+||+|+|||||+++|+ +..
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 678899999999999999999999999 653
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.00064 Score=60.17 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=25.3
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+.+ +.+.+|.++.|.|++|||||||++.+++..+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3444 67889999999999999999999999976543
No 98
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.88 E-value=0.00033 Score=63.61 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=29.0
Q ss_pred eeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.++|. +.+|+.++|+|++|+|||||++.|++. .+
T Consensus 14 ~~l~~---i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 14 HYVDA---IDTNTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HHHHH---HHHCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred HHHHh---ccCCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 34454 489999999999999999999999988 54
No 99
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.85 E-value=0.00083 Score=70.53 Aligned_cols=48 Identities=23% Similarity=0.060 Sum_probs=37.6
Q ss_pred cccceeccCceeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 224 AADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.++..|.....+++.+..+.+|++++|+|++|+|||||++.|++...+
T Consensus 96 ~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp SEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 445445322236777667899999999999999999999999998755
No 100
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00032 Score=65.68 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=34.3
Q ss_pred ccccccc-cceeccCceeeecc-ccccC---CCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 219 VSSKLAA-DTPLLTGQRVLDAL-FPSVL---GGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 219 ~~~r~~~-~~~l~TGi~aID~l-~pi~~---GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++-..+ +..+..+..+++.+ +.+.+ |+++.|+|++|||||||++++++..+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3444455 55554566788888 99999 99999999999999999999998543
No 101
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.80 E-value=0.00056 Score=60.95 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.7
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+|+.++|+||||+|||||+++|++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999999864
No 102
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.79 E-value=0.0007 Score=59.13 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|+.++|+||||+|||||++.|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999998754
No 103
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.00057 Score=64.31 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=32.8
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~ 277 (369)
+++.+ +.+.+| ++|+|++|||||||++.|++..+++.+.+.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 34444 677788 999999999999999999998877654443
No 104
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.78 E-value=0.0016 Score=65.60 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=30.4
Q ss_pred eecc-ccccCCCe--EeecCCCCCChHHHHHHHHhhc
Q 017581 236 LDAL-FPSVLGGT--CAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 236 ID~l-~pi~~GQr--~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++.+ +.+.+|+. ++|+|++|+|||||++.|++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 6777 99999999 9999999999999999999874
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.78 E-value=0.00072 Score=58.57 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+.+.+|+.++|+|++|+|||||++.|++..
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999998876
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.75 E-value=0.00057 Score=60.56 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.9
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+..+|+.++|.|++|+|||||++.|++..+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999998654
No 107
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.71 E-value=0.00053 Score=65.34 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=34.2
Q ss_pred eeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 235 aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
-||.++.+.+|+.++|+|+||+|||||+++|++...++
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 36778899999999999999999999999999987664
No 108
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.71 E-value=0.00083 Score=68.77 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=33.0
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+++.+ +++.+ +.++|+|++|||||||+++|++...+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4556666 89999 99999999999999999999987654
No 109
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.69 E-value=0.00068 Score=63.62 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=33.5
Q ss_pred eeeccccccCCCeEeecCCCCCChHHHHHHHHhhcC---CCeEEEE
Q 017581 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYV 277 (369)
Q Consensus 235 aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~---~d~vV~~ 277 (369)
+++.+. +.+|+.++|.|++|+|||||++.|++..+ .+.+++.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 455555 89999999999999999999999988753 3445443
No 110
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.66 E-value=0.0017 Score=75.23 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=69.7
Q ss_pred ccceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc-CCC-eEEEEeecccchhhhHHhhhccccccc
Q 017581 225 ADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNEMAEVLMDFPQLTMT 299 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~d-~vV~~~iGer~~ev~~~~~~f~~~~~~ 299 (369)
..+.+.||+..+|.++. +.+|+-+.|+|++|+|||+|+.+++.+. ..+ -++|.-..+...+.+ ...+
T Consensus 11 ~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~--~~~l------ 82 (1706)
T 3cmw_A 11 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL------ 82 (1706)
T ss_dssp -CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHHT------
T ss_pred cCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH--HHhh------
Confidence 34568999999999975 9999999999999999999999876542 233 477777655444433 2221
Q ss_pred CCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 300 ~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
+. -+++..++ .. ...+ ....+.+.+.+.+..-++|+||++-+.
T Consensus 83 -----g~-dl~~i~i~-~p---~t~e------~l~~ll~~L~~~~~~~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 83 -----GV-DIDNLLCS-QP---DTGE------QALEICDALARSGAVDVIVVDSVAALT 125 (1706)
T ss_dssp -----TC-CGGGCEEE-CC---SSHH------HHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -----cc-Cccceeee-cc---CcHH------HHHHHHHHHHhccCCCEEEEcchhhhc
Confidence 00 02222222 21 1122 223455566555666789999988654
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00068 Score=68.86 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=29.6
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.+.+|++++|+|++|||||||+++|++...+
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 88899999999999999999999999998743
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.65 E-value=0.00077 Score=65.69 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=30.0
Q ss_pred ccccC--CCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 240 FPSVL--GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 240 ~pi~~--GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
+++.+ |++++|+|++|||||||++.|++..+++
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 77888 9999999999999999999999987663
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0026 Score=60.47 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=53.2
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcCC----C-eEEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEe
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSNS----D-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~~----d-~vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~ 317 (369)
..++.+.|.|++|+|||||++.+++.... + .+++.-|.... ...++...+. ..-+. + ..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~---------~~l~~-~-----~~ 106 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLL---------ESLDV-K-----VP 106 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHT---------TTTSC-C-----CC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHH---------HHhCC-C-----CC
Confidence 56888999999999999999999876521 2 35666554332 2233333320 00000 0 00
Q ss_pred CCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 318 t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
....+ ....-..+.+++...+..++|++|++....
T Consensus 107 ~~~~~------~~~~~~~l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 107 FTGLS------IAELYRRLVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp SSSCC------HHHHHHHHHHHHHTCCSCEEEEEETHHHHH
T ss_pred CCCCC------HHHHHHHHHHHHhccCCeEEEEEcChhhhh
Confidence 00001 111123344566667778999999997665
No 114
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.00096 Score=69.04 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=29.5
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.+.+|+.++|+|++|||||||+++|++...+
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56899999999999999999999999998765
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.60 E-value=0.0012 Score=60.21 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=25.7
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
...+|+.++|+||||+|||||++.|++...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3578999999999999999999999887653
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.60 E-value=0.00072 Score=66.27 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=34.9
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEE
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVY 276 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~ 276 (369)
++.+ +.+.+|+.++|.|++|+|||||++.|++..++ +.+.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 3666 89999999999999999999999999998776 34444
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.58 E-value=0.00043 Score=60.74 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.3
Q ss_pred eeeeccccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++. +++.+|.+++|+|++|+|||||++.+++..
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45666 899999999999999999999999887654
No 118
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.55 E-value=0.0009 Score=59.23 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+.+.|-. +...+|+.+.|.|+||||||||++++++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444444 556789999999999999999999998764
No 119
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.55 E-value=0.00071 Score=74.68 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=36.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++...++
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578888 999999999999999999999999999988764
No 120
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.53 E-value=0.0018 Score=59.15 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.7
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
+++.+ +.+.+| ++|+|++|||||||++.|++..+.+.+.+
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34444 667788 99999999999999999999877655443
No 121
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.53 E-value=0.0092 Score=57.00 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=29.7
Q ss_pred cCCC--eEeecCCCCCChHHHHHHHHhhcCCC---eEEEEeecc
Q 017581 243 VLGG--TCAIPGAFGCGKTVISQALSKYSNSD---TVVYVGCGE 281 (369)
Q Consensus 243 ~~GQ--r~~Ifg~sG~GKstLl~~ia~~~~~d---~vV~~~iGe 281 (369)
..+. .+.|.|++|+|||||++.+++..... .+++.-|..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 3456 79999999999999999999876542 356666543
No 122
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.52 E-value=0.0013 Score=68.00 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=31.1
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
++.. +.+.+|++++|+|++|+|||||++.|++...+
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444 56789999999999999999999999998765
No 123
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.51 E-value=0.00068 Score=65.73 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=36.2
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
+++.+ +.+.+|+.++|.|++|+|||||++.|++..++ +.+.+-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 56667 88999999999999999999999999998766 344443
No 124
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.50 E-value=0.0012 Score=63.37 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=34.1
Q ss_pred ecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEee
Q 017581 237 DAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGC 279 (369)
Q Consensus 237 D~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~i 279 (369)
+.+ +.+.+|+.++|+|++|+|||||++.|++... .+.+.+.+.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 344 6789999999999999999999999998653 345665553
No 125
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.49 E-value=0.0031 Score=74.15 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=45.3
Q ss_pred ccceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc-CC-CeEEEEeec
Q 017581 225 ADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCG 280 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~-d~vV~~~iG 280 (369)
..+.+.||+..+|.++. +.+|.-+.|.||+|||||+|+..++..+ .. ..++|...-
T Consensus 1404 ~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1404 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 35669999999999999 8899999999999999999999876654 22 345555543
No 126
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0013 Score=63.30 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=27.2
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+.+|+.++|.|++|+|||||++.|++...
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 478999999999999999999999988654
No 127
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.49 E-value=0.0014 Score=72.36 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=33.1
Q ss_pred Cceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 232 GQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 232 Gi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
+..+++.+ +.+.+|++++|+|++|+|||||+++|++
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45688888 9999999999999999999999999985
No 128
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.49 E-value=0.0013 Score=58.87 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++++|+|++|+|||||++.|++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999998753
No 129
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.48 E-value=0.00044 Score=66.78 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.2
Q ss_pred eeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 236 ID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+|.|+++.+|+.++|+|+||+|||||++.|++...+
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcccccc
Confidence 577899999999999999999999999999887654
No 130
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.48 E-value=0.0013 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|+.++|+||+|+|||||+++|++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998654
No 131
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.46 E-value=0.0017 Score=68.17 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=31.2
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
++.. +.+.+|++++|+|++|+|||||+++|++...+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4444 56889999999999999999999999998765
No 132
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.43 E-value=0.0015 Score=73.97 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=39.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
..+++.+ +++.+|++++|+|++|+|||||++.|.+..+++ .+.+.+
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 4578888 999999999999999999999999999988774 454443
No 133
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.42 E-value=0.006 Score=58.91 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=51.6
Q ss_pred CCCeEee--cCCCCCChHHHHHHHHhhcCC-------Ce-EEEEeecccchhhhHHhhhcccccccCCCCCcCCCcceeE
Q 017581 244 LGGTCAI--PGAFGCGKTVISQALSKYSNS-------DT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313 (369)
Q Consensus 244 ~GQr~~I--fg~sG~GKstLl~~ia~~~~~-------d~-vV~~~iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~ 313 (369)
.++.+.| .|++|+|||+|+..+++.... +. +++.-|.+. ....++...+.+ .+ ... .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~l------~~~-~~--- 116 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVR-QT------GYP-IQ--- 116 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHH-HH------TCC-CC---
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHH-Hh------CCC-CC---
Confidence 4567777 899999999999998865422 33 566665443 233344333200 00 000 00
Q ss_pred EEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 314 LVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 314 vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
....+ .......+.+++...++.++|++|++-...
T Consensus 117 ----~~~~~------~~~~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 117 ----VRGAP------ALDILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp ----CTTCC------HHHHHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred ----CCCCC------HHHHHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 00001 112233445566666889999999996543
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0035 Score=59.68 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.2
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+..+.|.|++|+|||+|+..+++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999998765
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.41 E-value=0.0013 Score=62.72 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=32.4
Q ss_pred eeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 235 aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-+|.++.+.+|+..+|+|+||+|||||+++|+ ...+
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 46888999999999999999999999999999 7654
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.41 E-value=0.0016 Score=57.37 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+++|+|++|+|||||++.|++...
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 137
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.35 E-value=0.0021 Score=61.70 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=30.1
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
++|+.++|+|++|||||||++.|++...+ +.+.+.++
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 37999999999999999999999987644 45666554
No 138
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.34 E-value=0.0022 Score=54.63 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.|..++|.|++|+|||||++.+++..+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999987653
No 139
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.34 E-value=0.0022 Score=58.06 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=25.0
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|.-+|..+.|.||||+|||||++.+++..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 455689999999999999999999888653
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.33 E-value=0.0014 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|+.++|+|++|+|||||++.|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998865
No 141
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.33 E-value=0.0027 Score=59.00 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=32.2
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
.+++.+ +.+.+| ++|+|++|||||||++.|++....+.+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 344444 667788 99999999999999999999887655443
No 142
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.32 E-value=0.0035 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.1
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
+++|+|++|+|||||+++|++...++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999887653
No 143
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.28 E-value=0.0018 Score=62.10 Aligned_cols=59 Identities=20% Similarity=0.108 Sum_probs=44.1
Q ss_pred ceeccCceeeeccc-cccCCCeEeecCCCCCChHHHHHHHHhhc-CCC-eEEEEeecccchh
Q 017581 227 TPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNE 285 (369)
Q Consensus 227 ~~l~TGi~aID~l~-pi~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~d-~vV~~~iGer~~e 285 (369)
..+.||+..+|.++ -+.+|+-+.|.|++|+|||+|+.+++.+. ..+ -++|...-+...+
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~ 110 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKE 110 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHH
Confidence 45899999999995 48899999999999999999999887543 222 3444443443333
No 144
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.28 E-value=0.0011 Score=70.00 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHH
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
..+++.+ +.|.+|++++|+|++|||||||+++|.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4578888 999999999999999999999997643
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.26 E-value=0.0062 Score=71.64 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=71.4
Q ss_pred cccceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHh-hcCCC-eEEEEeecccchhhhHHhhhcccccc
Q 017581 224 AADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSK-YSNSD-TVVYVGCGERGNEMAEVLMDFPQLTM 298 (369)
Q Consensus 224 ~~~~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~d-~vV~~~iGer~~ev~~~~~~f~~~~~ 298 (369)
+..+.+.||+..+|.++. +.+|.-+.|.|++|+|||+|+.+++. ....+ -++|.-.-+...+.+ ...| ..
T Consensus 10 ~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~vlYI~tEes~~~~r--a~~l---G~ 84 (2050)
T 3cmu_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---GV 84 (2050)
T ss_dssp --CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHT---TC
T ss_pred cCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCceEEEEccCcchhhH--Hhhh---cc
Confidence 334569999999999975 88999999999999999999998754 33333 477877655444443 2222 11
Q ss_pred cCCCCCcCCCcceeEEEEeCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEEEecchHHHH
Q 017581 299 TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (369)
Q Consensus 299 ~~~~~~~~~~l~~t~vv~~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLli~Dsltr~A 358 (369)
. +++..+ ... + ..+ ....+.+++.+.+.--++|+||++-+.
T Consensus 85 --------d-l~~i~v-~~p-~--~~e------~ll~il~~L~~~~~~~lVVIDSISaL~ 125 (2050)
T 3cmu_A 85 --------D-IDNLLC-SQP-D--TGE------QALEICDALARSGAVDVIVVDSVAALT 125 (2050)
T ss_dssp --------C-TTTCEE-ECC-S--SHH------HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred --------C-ccccee-cCC-C--cHH------HHHHHHHHHHhccCCcEEEEcChHHhh
Confidence 1 222222 221 1 122 234566677665666789999998654
No 146
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.24 E-value=0.0058 Score=61.99 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=44.5
Q ss_pred ceecc-Cceeeecccc-ccCCCeEeecCCCCCChHHHHHHHHhhcC-C-C-eEEEEeecccchhh
Q 017581 227 TPLLT-GQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYSN-S-D-TVVYVGCGERGNEM 286 (369)
Q Consensus 227 ~~l~T-Gi~aID~l~p-i~~GQr~~Ifg~sG~GKstLl~~ia~~~~-~-d-~vV~~~iGer~~ev 286 (369)
..+.| |+..+|.++- +.+|+-+.|.|++|+|||+|+.+++.+.. . + -++|...-+...+.
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l 286 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEET 286 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 34789 9999999954 88999999999999999999998876542 2 3 35555434433333
No 147
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.23 E-value=0.0017 Score=68.52 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=27.7
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHH
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVIS 262 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl 262 (369)
..++|.+ +.|.+|++++|+|++|+|||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4578888 99999999999999999999997
No 148
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.23 E-value=0.0023 Score=66.18 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.2
Q ss_pred cccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 239 l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
|-...+|+.++|+|++|+|||||++.|++...++
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 3445599999999999999999999999987653
No 149
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.23 E-value=0.0022 Score=72.70 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=39.3
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC--eEEEEe
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG 278 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d--~vV~~~ 278 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|.+..+++ .+.+.+
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 4578888 999999999999999999999999999988773 454443
No 150
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.22 E-value=0.0017 Score=63.10 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=32.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+++.+ +.+.+|++++|+|++|+|||||++.|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3567766 889999999999999999999999998654
No 151
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.21 E-value=0.0011 Score=66.45 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=33.1
Q ss_pred eeeecc-ccccCCC--------------------eEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGG--------------------TCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQ--------------------r~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +.+.+|+ .++|+|++|+|||||+++|++...+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 467777 8899999 9999999999999999999986543
No 152
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.21 E-value=0.0029 Score=56.51 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=25.2
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+|..++|.||+|+|||||++++++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999987654
No 153
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.20 E-value=0.0021 Score=56.81 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=27.1
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-.+.+|..++|.|++|+|||||++.+++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 567889999999999999999999999864
No 154
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.18 E-value=0.0017 Score=66.46 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=37.3
Q ss_pred ceeccCceeeecc--ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 227 TPLLTGQRVLDAL--FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 227 ~~l~TGi~aID~l--~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+.+.||+.-+|.+ ..+.+|+.++|.|++|+|||||+.++++..
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4478898888876 489999999999999999999999988764
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.13 E-value=0.0028 Score=54.32 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.5
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+|..++|.|++|+|||||++.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998764
No 156
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0036 Score=65.74 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.9
Q ss_pred ceeeecc-ccccCC-----CeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLG-----GTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~G-----Qr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-++++.+ +.+.+| +.++|+|++|+|||||+++|++...+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3456666 888888 78999999999999999999988755
No 157
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.10 E-value=0.0031 Score=71.72 Aligned_cols=47 Identities=28% Similarity=0.493 Sum_probs=39.2
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEee
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGC 279 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~i 279 (369)
..+++.+ +.|.+|++++|+|++|+|||||++.|.+..++ |.+.+.+.
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 3467777 99999999999999999999999999999877 44555443
No 158
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.09 E-value=0.0034 Score=61.31 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=37.7
Q ss_pred ccceeccCceeeeccc-cccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 225 ADTPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 225 ~~~~l~TGi~aID~l~-pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++..+.||+..+|.++ -+.+|..+.|.|++|||||+|+.+++..
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4455789999999986 4558888899999999999999999875
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.09 E-value=0.0025 Score=64.10 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred ceeccCceeeeccc-cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 227 TPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 227 ~~l~TGi~aID~l~-pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.||+..+|.++ -+.+|+.+.|.|++|+|||||+.+++.+.
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999994 68899999999999999999999887654
No 160
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0027 Score=62.49 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=33.0
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEee
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGC 279 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~i 279 (369)
+.+.+|+.++|+|++|+|||||++.|++... .+.+.+.++
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 5788999999999999999999999998653 355666653
No 161
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.02 E-value=0.0033 Score=57.00 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=26.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+..+|..++|.|++|+|||||++.|++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35679999999999999999999999988
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.01 E-value=0.0029 Score=60.38 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.4
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+..+|..++|.|++|+|||||+++|++...
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 348999999999999999999999998644
No 163
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.01 E-value=0.0029 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|+.++|+|++|+|||||++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 678899999999999999999874
No 164
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.00 E-value=0.0029 Score=65.07 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=32.2
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEe
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVG 278 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~ 278 (369)
+.+.+|+.++|+|++|+|||||++.|++... .+.|.+.+
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 6789999999999999999999999988653 34565554
No 165
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.97 E-value=0.0097 Score=69.06 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=44.9
Q ss_pred cceeccCceeeecccc---ccCCCeEeecCCCCCChHHHHHHHHhhc--CCCeEEEEeecc
Q 017581 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGE 281 (369)
Q Consensus 226 ~~~l~TGi~aID~l~p---i~~GQr~~Ifg~sG~GKstLl~~ia~~~--~~d~vV~~~iGe 281 (369)
...+.||+..+|.++. +.+|.-+.|.|++|+|||||+.+++.+. ....++|.-.-+
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~ 421 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3458999999999997 8899999999999999999999876543 223466665333
No 166
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.96 E-value=0.0045 Score=54.01 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++..+|.+++|.|++||||||+++.+++.
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35668899999999999999999999887
No 167
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.93 E-value=0.0027 Score=62.54 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=30.2
Q ss_pred eeccccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 236 ID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.+....+|+.++|+|+||+|||||++.|++...
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 45565567999999999999999999999998765
No 168
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.89 E-value=0.0046 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.+++|.|++|+||||+++.+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.89 E-value=0.0036 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHH
Q 017581 244 LGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
++.+++|+|++|+|||||++.|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999999
No 170
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.81 E-value=0.0048 Score=56.95 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=23.3
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
.+|..++|.|++|||||||++.+++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999999983
No 171
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0097 Score=59.58 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEEEe-------ecccchhhhHHhhhcccccccCCCCCcCCCcceeEEEEeCCC
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVG-------CGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 320 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~-------iGer~~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~~t~~ 320 (369)
+++.||+|||||.|++.+|+..+...+.+.+ +|+..+-+++++.. +.....++++..-.|
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~-------------Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVM-------------AREHAPSIIFMDEID 251 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHH-------------HHHTCSEEEEEESSS
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHH-------------HHHhCCceEeeecch
Confidence 8999999999999999999998775544433 24444555555433 222345677765555
Q ss_pred CCHHhHhh-----hhHHHHHHHHHHHH-----CCCcEEEEe
Q 017581 321 MPVAAREA-----SIYTGITIAEYFRD-----MGYNVSMMA 351 (369)
Q Consensus 321 ~~~~~r~~-----a~~~a~tiAEyfr~-----~G~~VLli~ 351 (369)
.....|.. ......++.+.|.. ...+|++|+
T Consensus 252 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIa 292 (405)
T 4b4t_J 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292 (405)
T ss_dssp CCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEE
T ss_pred hhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEe
Confidence 43332211 11233345555542 244677664
No 172
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.74 E-value=0.0037 Score=64.28 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=33.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+++.+ +.+.+|+.++|.|++|+|||||+++|++...++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 355666 788999999999999999999999999988764
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.73 E-value=0.0037 Score=61.95 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=32.6
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+++.+ +.+.+|+.++|.|++|+|||||++.|++..+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 455666 78999999999999999999999999987543
No 174
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.70 E-value=0.0053 Score=59.57 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeec
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCG 280 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iG 280 (369)
...+|+.++|+|++|+|||||++.|++...+ +.+.+.++-
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4578999999999999999999999986533 446555543
No 175
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.66 E-value=0.0054 Score=54.36 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=25.8
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+..+|..++|.|++|+|||||++.+++..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999998754
No 176
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.64 E-value=0.0056 Score=52.75 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=28.6
Q ss_pred Cceee--ecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 232 GQRVL--DAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 232 Gi~aI--D~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.+.+ +.+ +.+.+| ..+|+|++|+|||||+..|...
T Consensus 11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44555 444 777888 9999999999999999988653
No 177
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.61 E-value=0.0066 Score=53.74 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=25.2
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+|..+.|.|+||+|||||++.+++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5688999999999999999999998765
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.50 E-value=0.046 Score=52.67 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=31.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEeecc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGE 281 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~iGe 281 (369)
+.+.+|+.++|.|++|+||||++..+|.... ..-+.+..+-.
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5678999999999999999999998876542 23355555443
No 179
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.42 E-value=0.0053 Score=61.47 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=37.0
Q ss_pred ceeccCceeeeccc-cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 227 TPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 227 ~~l~TGi~aID~l~-pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.||+..+|.++ -+.+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999995 48899999999999999999999887654
No 180
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.42 E-value=0.0074 Score=59.33 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=27.1
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+.+|+.++|.|++|+|||||++.|++..+
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 378999999999999999999999988654
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.42 E-value=0.0083 Score=51.70 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=23.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|..++|.|++|+||||+++.+++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999998764
No 182
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.41 E-value=0.017 Score=59.14 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.0
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
+.+.+| ++|.|++|||||+|++.|++..+...+.+
T Consensus 61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 61 ARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp CCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 556677 99999999999999999999887654433
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.37 E-value=0.006 Score=59.58 Aligned_cols=43 Identities=23% Similarity=0.119 Sum_probs=38.2
Q ss_pred ceeccCceeeeccc-cccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 227 TPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 227 ~~l~TGi~aID~l~-pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.-+.||+..+|.++ -+.+|+-+.|.|++|+|||+|+..++.+.
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34899999999995 59999999999999999999999887653
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.36 E-value=0.013 Score=55.36 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=27.0
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
+..+..++|.|++|||||+|++.+++..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999987654
No 185
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.30 E-value=0.0072 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.1
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+|.+++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999998764
No 186
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.28 E-value=0.0083 Score=51.64 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.3
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+|.++.|.|++|+||||+++.+++..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998643
No 187
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.24 E-value=0.016 Score=51.75 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=29.6
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEEEeeccc-chhhhHHhhh
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGER-GNEMAEVLMD 292 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer-~~ev~~~~~~ 292 (369)
+.|.|++|+|||+++.+++.. . .-++|...++. ..|.++.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCCCCCHHHHHHHHH
Confidence 679999999999999999876 3 24788887765 4555555544
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.22 E-value=0.019 Score=48.97 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
|..+.|.|.||+||||+++.+++..+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~ 31 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 56789999999999999999998765443
No 189
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.20 E-value=0.0065 Score=58.33 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=30.4
Q ss_pred eeeecc-ccccCC-------CeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 234 RVLDAL-FPSVLG-------GTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 234 ~aID~l-~pi~~G-------Qr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+++.+ +.+..| +.++|.||+|+|||||++.|++..+..
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 455555 555554 789999999999999999999887543
No 190
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.18 E-value=0.014 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
++|.|++|||||||++.|++..+...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 99999999999999999998775443
No 191
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.17 E-value=0.012 Score=51.02 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.3
Q ss_pred eeccccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 236 ID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|.-....+|..+.|.|.+|+||||+++.+++..
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4444455688999999999999999999998764
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.12 E-value=0.0095 Score=58.43 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.8
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
...+|+.++|.|++|+|||||++.|++..++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 5678889999999999999999999876643
No 193
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.10 E-value=0.0079 Score=53.15 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=32.9
Q ss_pred eeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecc
Q 017581 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGE 281 (369)
Q Consensus 235 aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGe 281 (369)
.+..+..-.+++.+.|.|++|+|||+|+..+++.... ..++|.-+.+
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3444444447899999999999999999999876532 2355555444
No 194
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.08 E-value=0.014 Score=50.18 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.4
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++..+.|.|++|+||||+++.++...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999986643
No 195
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.07 E-value=0.011 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999998765
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.05 E-value=0.0084 Score=60.42 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=44.5
Q ss_pred ceeccCceeeecccc-ccCCCeEeecCCCCCChHHHHHHHHhhc-CCCe-EEEEeecccchhh
Q 017581 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS-NSDT-VVYVGCGERGNEM 286 (369)
Q Consensus 227 ~~l~TGi~aID~l~p-i~~GQr~~Ifg~sG~GKstLl~~ia~~~-~~d~-vV~~~iGer~~ev 286 (369)
..+.||+..+|.++. +.+|+-+.|-|++|+|||+|+.+++.+. ..+. ++|...-+...+.
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql 240 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKEN 240 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHH
Confidence 458999999999964 8899999999999999999999887654 2233 4444434433333
No 197
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.05 E-value=0.012 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+.|.|++|+||||+++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998663
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.02 E-value=0.012 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 199
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.99 E-value=0.043 Score=56.47 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=34.0
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHh----hcCCCeEEEEeecccchh
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSK----YSNSDTVVYVGCGERGNE 285 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~----~~~~d~vV~~~iGer~~e 285 (369)
+.+.++..++|.|.+|+||||+++.|+. ...++-+-+.++-.++.+
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e 211 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE 211 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh
Confidence 7788999999999999999999996543 334555555566655544
No 200
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.93 E-value=0.021 Score=52.63 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.2
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcCCCeE
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~v 274 (369)
+..+.-+.|.|++|||||+|++.+++..+...+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345667999999999999999999988765433
No 201
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.93 E-value=0.015 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|..+.|.|++|+||||+++.+++..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 202
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.93 E-value=0.0037 Score=61.21 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=32.0
Q ss_pred cCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 231 TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 231 TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
.++++++.+ +.+.+| +.+|+|++|+|||||+..|..
T Consensus 46 ~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 46 RNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 456788888 999999 999999999999999998843
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.91 E-value=0.019 Score=49.40 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+..+.|.|++||||||+++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999987654
No 204
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.88 E-value=0.014 Score=55.47 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=25.0
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
-.++..++|.|++|+|||||++.|++...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45788999999999999999998886553
No 205
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.81 E-value=0.014 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.++|.|++|+||||+++.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4899999999999999999873
No 206
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.80 E-value=0.013 Score=51.43 Aligned_cols=21 Identities=29% Similarity=0.762 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHh
Q 017581 247 TCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~ 267 (369)
+++|.|++|+||||+++.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 207
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.80 E-value=0.021 Score=57.25 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=33.1
Q ss_pred eeeeccccccCCCeEeecCCCCCChHHHHHHHHhhcCC--CeEEEE
Q 017581 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (369)
Q Consensus 234 ~aID~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~ 277 (369)
.+++.++ ..+|+.++|.|++|+|||||++.|++..++ +.+++.
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 3555554 478999999999999999999999887654 344443
No 208
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.79 E-value=0.013 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|||||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999874
No 209
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.76 E-value=0.016 Score=53.31 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=29.0
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEE
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVV 275 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV 275 (369)
.+..++..+.|.|++|+||||+++.+++..+.+.++
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~ 62 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVI 62 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEE
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEE
Confidence 356778899999999999999999999876543333
No 210
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.75 E-value=0.021 Score=48.45 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
=|-++|.|++|+||||+++.+++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 37899999999999999999998643
No 211
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.71 E-value=0.02 Score=58.51 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=28.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc------CCCeEEEEeeccc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS------NSDTVVYVGCGER 282 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~------~~d~vV~~~iGer 282 (369)
....++|.|++|+|||||+..+++.. -++.+.|+-++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45678999999999999999987532 1245666666654
No 212
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.70 E-value=0.021 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.4
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+..+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999988764
No 213
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.68 E-value=0.016 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 214
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.67 E-value=0.0076 Score=52.96 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.8
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.++|+|+||+|||||+..|++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999887543
No 215
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.63 E-value=0.16 Score=43.95 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-+.|.|++|+|||+|+..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988654
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.62 E-value=0.018 Score=50.45 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.0
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
..+|-.+.|.|++|+||||+++.+++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999999875
No 217
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.59 E-value=0.058 Score=55.19 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCeEeecCCCCCChHHHHHHHHh----hc--CCCeEEEEeeccc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSK----YS--NSDTVVYVGCGER 282 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~----~~--~~d~vV~~~iGer 282 (369)
...++|.|..|+|||||+..+++ .. +.|.++|+.+++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~ 195 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT 195 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCC
Confidence 35789999999999999999996 22 2367778766654
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.57 E-value=0.019 Score=51.03 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=26.8
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+.+|..+.|.|.+|+||||+++.+++...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4466899999999999999999999987654
No 219
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.56 E-value=0.02 Score=49.59 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.|.|++|+||||+++.+++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998654
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.55 E-value=0.02 Score=59.03 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
+|..++|+||+|||||||++.|++..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999999999887553
No 221
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.016 Score=58.46 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.9
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEEE
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYV 277 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~ 277 (369)
+++.||+|||||.|++.||+..+...+.+.
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 899999999999999999999887654443
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.48 E-value=0.023 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|-.+.|.|++|+||||+++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999875
No 223
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.46 E-value=0.031 Score=51.89 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+.-++|.|++|||||+|++.+++..+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 4667999999999999999999988754
No 224
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.42 E-value=0.029 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+++|.|++|+||||++..++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987543
No 225
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.41 E-value=0.021 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.7
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
..+|-.+.|.|++|+||||+++.+++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999875
No 226
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.41 E-value=0.024 Score=48.41 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=20.4
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.++..+.|.|.+|+||||+++.+++..+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 367789999999999999999999765543
No 227
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.40 E-value=0.027 Score=49.78 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+++|.|++|+||||+++.++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976543
No 228
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.38 E-value=0.013 Score=61.09 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=33.9
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-.+++.+ +.+..|+.++|.|++|||||||++.|++....
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4566667 88889999999999999999999999987754
No 229
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.052 Score=51.04 Aligned_cols=65 Identities=12% Similarity=-0.101 Sum_probs=50.3
Q ss_pred eccCceeeecccc--ccCCCeEeecCCCCCChHHHHHHHHh-hcCC-CeEEEEeecccchhhhHHhhhc
Q 017581 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSK-YSNS-DTVVYVGCGERGNEMAEVLMDF 293 (369)
Q Consensus 229 l~TGi~aID~l~p--i~~GQr~~Ifg~sG~GKstLl~~ia~-~~~~-d~vV~~~iGer~~ev~~~~~~f 293 (369)
+.|||..+|.++. +.+|.-++|.|++|+|||+|+.+++. .+.. .-++|....|...+..+-.+.|
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRF 71 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHT
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHc
Confidence 6899999999964 67999999999999999999887654 3333 4577777788777766665543
No 230
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.30 E-value=0.039 Score=49.83 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.7
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..-+.|.|++|||||+|++.+++..+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4458999999999999999999876543
No 231
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.30 E-value=0.024 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+|-.+.|.|++|+||||+++.+++..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999987544
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.28 E-value=0.031 Score=60.37 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=29.4
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCCCeE
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~v 274 (369)
.+..|..++|.|++|||||||++.|++..+...+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 5678999999999999999999999998765433
No 233
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.25 E-value=0.024 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.23 E-value=0.031 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.9
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
-.++|.|++|+|||||++.+++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 235
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.026 Score=56.92 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.0
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
+++.||+|||||.|++.+|+..+...
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 89999999999999999998876543
No 236
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.20 E-value=0.043 Score=49.95 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.9
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
...+|..+.|.|++|+||||+++.+++....
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999999876543
No 237
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.16 E-value=0.024 Score=47.82 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.2
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.....+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446678999999999999999988764
No 238
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.16 E-value=0.03 Score=48.19 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=24.0
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++..+.|.|++|+||||+++.+++..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987653
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.13 E-value=0.17 Score=47.80 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=23.3
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.-+++..++|.|++|+|||||++.+++.
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3455555999999999999999999883
No 240
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.11 E-value=0.045 Score=55.10 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=33.8
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLM 291 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~ 291 (369)
.-+.|.|++|||||||++.|++..+...+-+...+....++++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIE 96 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHH
Confidence 4689999999999999999999987765555544443445555544
No 241
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.08 E-value=0.027 Score=48.59 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.4
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++-.+.|.|++|+||||+++.+++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987543
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.07 E-value=0.026 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.|.|++|+||||+++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987653
No 243
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.029 Score=56.42 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=24.5
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
+++.||+|||||+|++.||+..+...+.+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 89999999999999999998876644433
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.04 E-value=0.031 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.0
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+|.+++|.|++|+||||+++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998863
No 245
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.04 E-value=0.028 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
-.+.|.|++|||||||++.|++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 246
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.03 E-value=0.025 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++|.|++|||||||++.|++...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999887653
No 247
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.00 E-value=0.016 Score=60.20 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.8
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+.+|+.+.|+|++|||||||++.|++...+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 5789999999999999999999999987643
No 248
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.99 E-value=0.035 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++.|.|++|+||||+++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987543
No 249
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.98 E-value=0.029 Score=52.91 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=23.5
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
++|.||+|||||+|++.||+..+...+.+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 66779999999999999998876544433
No 250
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.94 E-value=0.032 Score=49.96 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=23.3
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..++.++.|.|++|+||||+++.+++..+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34667899999999999999999997653
No 251
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.92 E-value=0.033 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987653
No 252
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.91 E-value=0.045 Score=51.63 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.3
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
+-.+|..+.|.|+||+|||||++.+++..+.+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~ 61 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 61 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 445677899999999999999999987654333
No 253
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.91 E-value=0.032 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999987643
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.90 E-value=0.038 Score=46.04 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=17.9
Q ss_pred eEeecCCCCCChHHHHHHH
Q 017581 247 TCAIPGAFGCGKTVISQAL 265 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~i 265 (369)
.++|.|++|+||||+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 255
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.026 Score=57.46 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCCeEEEE
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYV 277 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~ 277 (369)
--+++.||+|||||.|++.||+..+...+.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 34899999999999999999999877544443
No 256
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.86 E-value=0.027 Score=56.48 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.1
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+++.+ +.| +|+|++|+|||||++++++...
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 3456665 554 9999999999999999998753
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.84 E-value=0.033 Score=47.71 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=22.4
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++-.+.|.|++|+||||+++.+++..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355799999999999999999987543
No 258
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.83 E-value=0.04 Score=49.00 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.9
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+|-++.|.|++|+||||+++.+++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999988654
No 259
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.83 E-value=0.031 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
-..++|.|++|+||||+++.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999987
No 260
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.83 E-value=0.036 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999887653
No 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.76 E-value=0.14 Score=57.33 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=28.8
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc----C-CCeEEEEeecccc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS----N-SDTVVYVGCGERG 283 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~----~-~d~vV~~~iGer~ 283 (369)
..-++|.|+.|+|||||+.++++.. + .+.+.|+-+++..
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~ 193 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC
Confidence 4678999999999999999988532 1 1236676667644
No 262
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.76 E-value=0.033 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6899999999999999988754
No 263
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.75 E-value=0.023 Score=55.96 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=27.0
Q ss_pred eecc-ccccCCCe--EeecCCCCCChHHHHHHHHhh
Q 017581 236 LDAL-FPSVLGGT--CAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 236 ID~l-~pi~~GQr--~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++.+ +.+..|++ +.|+|++|+|||||++.+++.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444 55678888 999999999999999988764
No 264
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.72 E-value=0.05 Score=47.56 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++-++.|.|++|+||||+++.++...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999987643
No 265
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.71 E-value=0.0064 Score=56.06 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.6
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+..+|+||+|||||||+.+|+....+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc
Confidence 67899999999999999999876543
No 266
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.71 E-value=0.031 Score=48.37 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=20.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++++.+ +... .-+++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~-~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNK-HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCC-ccEEEEECCCCCCHHHHHHHHhcC
Confidence 344444 3333 348999999999999999998864
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.69 E-value=0.031 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+.|.|++|+||||+++.+++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998754
No 268
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.68 E-value=0.047 Score=51.54 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=27.7
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEeec
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCG 280 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~iG 280 (369)
.+.-+.|.|++|||||||+..|++... ...+++.-+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 567899999999999999999988652 1224555443
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.67 E-value=0.041 Score=50.79 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
-+.|.|++|+|||||++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 3789999999999999999987543
No 270
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.66 E-value=0.033 Score=55.42 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=25.2
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
.+.+|.+++|+|++|+|||||+++|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 567899999999999999999999988
No 271
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.66 E-value=0.038 Score=45.88 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988765
No 272
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.65 E-value=0.039 Score=45.34 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999987653
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.64 E-value=0.038 Score=46.75 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=19.6
Q ss_pred eEeecCCCCCChHHHHHHHHh
Q 017581 247 TCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~ 267 (369)
.+.|.|++|+||||+++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999998
No 274
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.63 E-value=0.053 Score=50.04 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCCeEE
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTVV 275 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV 275 (369)
.+.-+.|.|++|||||+|++.+++..+...+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999887654443
No 275
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=0.04 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887554
No 276
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.62 E-value=0.043 Score=60.38 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=27.5
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHH
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQAL 265 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~i 265 (369)
+.+.+ +.+.+|+.++|.||+|+|||||+++|
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 44444 89999999999999999999999988
No 277
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.61 E-value=0.032 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999987653
No 278
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.61 E-value=0.03 Score=48.40 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=24.6
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+.++..++|.|++|+||||+++.++...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999987653
No 279
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.57 E-value=0.05 Score=50.01 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.9
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
.....+.|.|++|||||+|+..+++..+...+.+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3445789999999999999999999876554433
No 280
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.041 Score=45.53 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.2
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998864
No 281
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.55 E-value=0.044 Score=59.32 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=28.3
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +. .+|+.++|.||+|+|||||+++|+..
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 345555 66 89999999999999999999988753
No 282
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.55 E-value=0.043 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.9
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+-+.|.|++|+|||+|+..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999988765
No 283
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.53 E-value=0.33 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-+.|.|++|+|||+|+..+++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 284
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.52 E-value=0.038 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988643
No 285
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.52 E-value=0.043 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=19.9
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++++|++|+|||+|++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 286
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.51 E-value=0.043 Score=52.14 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..-++|.|++|||||+|++.+++..+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 3458999999999999999999887553
No 287
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.50 E-value=0.043 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987643
No 288
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.48 E-value=0.08 Score=50.56 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..-++|.|++|||||+|++.+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4568999999999999999999887
No 289
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.46 E-value=0.042 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++|.|++|+||||+++.++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998764
No 290
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.44 E-value=0.045 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.3
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999887543
No 291
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.44 E-value=0.056 Score=47.18 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+...++|.|++|+||||+++.+++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999987643
No 292
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.43 E-value=0.045 Score=45.77 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=23.7
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.-+.|.|++|||||+|++.|++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 355679999999999999999999875
No 293
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.40 E-value=0.046 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999987654
No 294
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.40 E-value=0.035 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EeecCCCCCChHHHHHHHHhhcC
Q 017581 248 CAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+.|.|++|||||+|+..+++..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 89999999999999999988654
No 295
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.045 Score=55.23 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.7
Q ss_pred EeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 248 CAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
+++.||+|||||.|++.||+..+...+.+
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999998876644433
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.046 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-=+++|+|++|+|||||+..+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999988754
No 297
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.33 E-value=0.046 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|++|+|||||++.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999877653
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.32 E-value=0.057 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.|.|++|+||||+++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988543
No 299
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.32 E-value=0.048 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.9
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988764
No 300
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.32 E-value=0.047 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
No 301
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.31 E-value=0.048 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 79999999999999999887643
No 302
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.31 E-value=0.032 Score=61.30 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=29.4
Q ss_pred ceeeecc-ccccCCCeEeecCCCCCChHHHHHHHH
Q 017581 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 233 i~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
-.+.+.+ +.+.+|+.++|.||+|+|||||+++|+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 3455555 899999999999999999999999876
No 303
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.31 E-value=0.032 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++.+++|+|++|+|||||++.+.++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 55689999999999999999998653
No 304
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.026 Score=53.84 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=28.5
Q ss_pred eeeecc-ccccCCCe--EeecCCCCCChHHHHHHHHhhc
Q 017581 234 RVLDAL-FPSVLGGT--CAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 234 ~aID~l-~pi~~GQr--~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++.+ ..+..|+. +++.||+|+||||++..+++..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345555 55666766 8999999999999999999874
No 305
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.23 E-value=0.052 Score=45.45 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.9
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 306
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.23 E-value=0.041 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999887653
No 307
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.23 E-value=0.024 Score=59.34 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=21.0
Q ss_pred EeecCCCCCChHHHHHHHHhhc
Q 017581 248 CAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++|+|++|+|||||++.|++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999876
No 308
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.22 E-value=0.05 Score=52.16 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=30.7
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEeec
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCG 280 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~iG 280 (369)
+...+|+.++|.|++|+||||++..+|.... ..-+.++.+-
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 3467899999999999999999999887542 2335555543
No 309
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.21 E-value=0.027 Score=56.35 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.7
Q ss_pred eccccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 237 D~l~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.-+.+..|..++|+|++|+|||||++.|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 33488999999999999999999999999876
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.20 E-value=0.032 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999988754
No 311
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.18 E-value=0.048 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+|-++.|.|++|+||||+++.++...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987653
No 312
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.17 E-value=0.048 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|.+|+|||||++.|.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999998654
No 313
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.17 E-value=0.041 Score=48.99 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.3
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.++.|.|++|+||||+++.+++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987643
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.13 E-value=0.046 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.7
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..+.|.|++|+||||+++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987643
No 315
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.12 E-value=0.22 Score=46.68 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=29.6
Q ss_pred eEeecCC-CCCChHHHHHHHHhhcCCCeEEEEeecccchhhhHHhhh
Q 017581 247 TCAIPGA-FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMD 292 (369)
Q Consensus 247 r~~Ifg~-sG~GKstLl~~ia~~~~~d~vV~~~iGer~~ev~~~~~~ 292 (369)
...+++| +|||||+++..+++..+.+++-+-+...+...+++.+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~ 95 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN 95 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHH
Confidence 4556655 999999999999998866554444322223444444443
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.12 E-value=0.053 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999988654
No 317
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.12 E-value=0.079 Score=58.01 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=28.2
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc------CCCeEEEEeeccc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS------NSDTVVYVGCGER 282 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~------~~d~vV~~~iGer 282 (369)
..++|.|..|+|||||+..+++.. -.+.+.++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 458899999999999999988652 2356767776653
No 318
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.11 E-value=0.054 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.|.|++|+|||+|+..+++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999988753
No 319
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.09 E-value=0.054 Score=44.93 Aligned_cols=24 Identities=33% Similarity=0.187 Sum_probs=21.0
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
-=+++|+|++|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999998754
No 320
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.08 E-value=0.063 Score=54.66 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=25.2
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+.+| ++|.|++|||||+|++.|++..+..
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 44556 9999999999999999999877554
No 321
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.07 E-value=0.044 Score=45.82 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 79999999999999999987653
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.06 E-value=0.06 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.++.|.|++|+||||+++.+++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999997654
No 323
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.06 E-value=0.044 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 324
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.05 E-value=0.053 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.03 E-value=0.055 Score=45.33 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.4
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+.-+++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999998753
No 326
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.02 E-value=0.079 Score=51.00 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCCeE
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~v 274 (369)
.+..++|.|++|||||+|++.|++..+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3456999999999999999999998765443
No 327
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.01 E-value=0.033 Score=52.92 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.2
Q ss_pred eecCCCCCChHHHHHHHHhh
Q 017581 249 AIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 249 ~Ifg~sG~GKstLl~~ia~~ 268 (369)
+|+|++|+|||||++.|.+.
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 99999999999999998865
No 328
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.97 E-value=0.057 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987653
No 329
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.95 E-value=0.057 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++++|.+|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999987653
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.95 E-value=0.052 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.0
Q ss_pred EeecCCCCCChHHHHHHHHhh
Q 017581 248 CAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 248 ~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.|.||||+|||||++.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999977643
No 331
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.94 E-value=0.077 Score=50.09 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..+.|.|++|||||+|++.+++..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 459999999999999999999876554
No 332
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.92 E-value=0.059 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 69999999999999999987643
No 333
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.90 E-value=0.058 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999998875
No 334
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.88 E-value=0.066 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|+.|+|++|+|||+|++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998854
No 335
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.87 E-value=0.058 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999887643
No 336
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.85 E-value=0.058 Score=52.91 Aligned_cols=36 Identities=28% Similarity=0.196 Sum_probs=30.3
Q ss_pred cCceeeecc-ccccCCCeEeecCCCCCChHHHHHHHHh
Q 017581 231 TGQRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 231 TGi~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
.+.+.++.+ +.+.+| ..+|+|++|+|||||+..|..
T Consensus 12 ~~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 12 LNYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ESBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eCccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 356667666 888889 999999999999999998763
No 337
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.83 E-value=0.062 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988764
No 338
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.82 E-value=0.044 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999987653
No 339
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.82 E-value=0.062 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 79999999999999999887543
No 340
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.81 E-value=0.062 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++++|++|+|||||+..+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999887543
No 341
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.81 E-value=0.067 Score=50.96 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=25.5
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.|.-+.|.|++|||||+|+..+++....+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46789999999999999999999887654
No 342
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.80 E-value=0.052 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=20.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988754
No 343
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.78 E-value=0.047 Score=45.96 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++++|++|+|||+|+..+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 79999999999999999988653
No 344
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.71 E-value=0.065 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
=+++|+|++|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999887653
No 345
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.71 E-value=0.066 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.5
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.-++|.|++|||||+|++.+++..+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 448999999999999999999887653
No 346
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.69 E-value=0.063 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999988765
No 347
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.68 E-value=0.093 Score=50.70 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
...-++|.|++|||||+|++.|++..+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 35569999999999999999999887554
No 348
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.68 E-value=0.065 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=21.2
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.|.|++|+||||+++.++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987553
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.67 E-value=0.06 Score=45.97 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
...++|.|++|+||||+++.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998754
No 350
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.66 E-value=0.067 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||+|+..+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 79999999999999999887653
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.65 E-value=0.066 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999988653
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.64 E-value=0.064 Score=48.99 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++=++.|.|++|+||||+++.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55589999999999999999998654
No 353
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.62 E-value=0.067 Score=45.74 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987654
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.59 E-value=0.071 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-.++|.|++|+||||++++++...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999863
No 355
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.59 E-value=0.073 Score=59.07 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=27.1
Q ss_pred eeeecc-ccccC-------CCeEeecCCCCCChHHHHHHH
Q 017581 234 RVLDAL-FPSVL-------GGTCAIPGAFGCGKTVISQAL 265 (369)
Q Consensus 234 ~aID~l-~pi~~-------GQr~~Ifg~sG~GKstLl~~i 265 (369)
.+++.+ +.+.+ |+.++|.||+|+|||||+++|
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 455555 77776 899999999999999999987
No 356
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.58 E-value=0.048 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998765
No 357
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.55 E-value=0.068 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
+-.++|.|++|+||||+++.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 358
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=92.53 E-value=0.036 Score=61.20 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=28.2
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHH
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQAL 265 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~i 265 (369)
.++.+ +.|.+|+.++|.|++|+|||||++.|
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 46777 99999999999999999999999975
No 359
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.51 E-value=0.026 Score=61.38 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=28.7
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHH-HH
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQA-LS 266 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~-ia 266 (369)
.++.+ +.|.+|+.++|.|.+|+|||||+++ ++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 47777 9999999999999999999999996 54
No 360
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.49 E-value=0.062 Score=51.08 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=29.4
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcC--CC-eEEEEeec
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN--SD-TVVYVGCG 280 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d-~vV~~~iG 280 (369)
..+|+.++|+|++|+||||++..++.... .+ -+.++.+-
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35799999999999999999999886542 34 35444443
No 361
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.47 E-value=0.087 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++|.|++|+||||+++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 362
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.45 E-value=0.053 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
--+++|+|++|+|||||++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999988765
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.45 E-value=0.061 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999887543
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.42 E-value=0.059 Score=45.96 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.2
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998865
No 365
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.39 E-value=0.076 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.9
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 366
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.064 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999988654
No 367
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.36 E-value=0.56 Score=47.10 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.1
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++..+++.|++|+||||++..+|...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999887543
No 368
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.34 E-value=0.062 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.7
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|.+|+|||||+..+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988754
No 369
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.32 E-value=0.074 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.6
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.-+.|.|++|||||+|+..+++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345569999999999999999888654
No 370
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=92.32 E-value=0.038 Score=60.92 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=28.2
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHHHH
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQAL 265 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~i 265 (369)
.++.+ +.|.+|+.++|.|++|+|||||+++|
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 46777 89999999999999999999999975
No 371
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.32 E-value=0.24 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|..+++.|++|+||||++..++...
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999887654
No 372
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.27 E-value=0.078 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999988653
No 373
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.27 E-value=0.078 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.3
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||+..+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999887543
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.27 E-value=0.073 Score=48.63 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.++|.|++|+||||+++.++...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 375
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.25 E-value=0.051 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.8
Q ss_pred CeEeecCCCCCChHHHHHHHHhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
=+++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998865
No 376
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.25 E-value=0.09 Score=56.59 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=22.5
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|+.++|.||+|+|||||+++|+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 999999999999999999998764
No 377
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.24 E-value=0.08 Score=44.89 Aligned_cols=22 Identities=18% Similarity=-0.044 Sum_probs=19.2
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|+|||||++.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999877653
No 378
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.23 E-value=0.08 Score=45.38 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999988643
No 379
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.22 E-value=0.081 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999887653
No 380
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.22 E-value=0.079 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.1
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
=+++|+|++|+|||||+..+.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999987653
No 381
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.20 E-value=0.078 Score=50.06 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=26.5
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+..|.-+.|.|++|||||+|++.+++..+..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34457789999999999999999999876544
No 382
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.19 E-value=0.078 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||+..+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887653
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.19 E-value=0.074 Score=45.15 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=22.2
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+.=+++|+|++|+|||||++.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999987644
No 384
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.17 E-value=0.081 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999887643
No 385
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.13 E-value=0.12 Score=49.85 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCCe
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d~ 273 (369)
...+.|.|++|||||+|++.+++..+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45699999999999999999998875433
No 386
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.11 E-value=0.086 Score=50.18 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++.+.|.|++|+|||+|+..|++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999987543
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.11 E-value=0.071 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999887543
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.08 E-value=0.084 Score=46.19 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-+++|+|++|+|||||+..+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999988754
No 389
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.06 E-value=0.073 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||+..+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988754
No 390
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.06 E-value=0.072 Score=49.39 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=27.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCC--CeEEEEeecc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGE 281 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~--d~vV~~~iGe 281 (369)
..++|.|++|||||+|++.|++.... ..+++..|..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 46999999999999999999987533 2355555554
No 391
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.03 E-value=0.43 Score=47.81 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+|+.+++.|++|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999888654
No 392
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.02 E-value=0.13 Score=48.01 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEee
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC 279 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~i 279 (369)
|+-+.|.|++|+|||+|+..+++..+ ++|.-+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~ 62 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP---GILIDC 62 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS---EEEEEH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC---cEEEEe
Confidence 57899999999999999999988763 555544
No 393
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.089 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988764
No 394
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.99 E-value=0.091 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=19.9
Q ss_pred CeEeecCCCCCChHHHHHHHHhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
..++|.|++|+|||||+..+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999987654
No 395
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.98 E-value=0.086 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 78999999999999999887653
No 396
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.96 E-value=0.074 Score=51.25 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=28.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+.+|.+++|.|++|+|||||++.+++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444 56889999999999999999999988754
No 397
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.92 E-value=0.12 Score=50.26 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+.-++|.|++|||||+|+..|++..+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 35679999999999999999999887553
No 398
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.92 E-value=0.09 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.1
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
=+++|+|++|+|||||+..+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999988654
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.90 E-value=0.088 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++.|+||+|+||+|++..|++.-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987543
No 400
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.88 E-value=0.071 Score=49.25 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|||||||++.+.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 401
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.88 E-value=0.083 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.1
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.|..+.|.|++|+|||+|+..+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 57789999999999999999998754
No 402
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.88 E-value=0.089 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.|.|++|+||||+++.++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 403
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=91.85 E-value=0.082 Score=52.65 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=24.3
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
-+..|.+++|+|.+|+|||||++.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567889999999999999999999876
No 404
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.85 E-value=0.089 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+.+++|+|++|+|||||++.+++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999998864
No 405
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.81 E-value=0.079 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
=|++|+|.+|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 389999999999999999988654
No 406
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.79 E-value=0.062 Score=46.81 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.4
Q ss_pred eEeecCCCCCChHHHHHHHHh
Q 017581 247 TCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~ 267 (369)
+++|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999864
No 407
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.74 E-value=0.054 Score=47.26 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=24.3
Q ss_pred eecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 236 LDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 236 ID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++.+ ++..++ +++|+|++|+|||||++.+.+.
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3444 444444 7999999999999999998753
No 408
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.72 E-value=0.096 Score=48.84 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
..-+.|.|++|||||+|+..+++..+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3569999999999999999999876543
No 409
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.70 E-value=0.09 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|++|+|.+|+|||||++.|.+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999987654
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.68 E-value=0.037 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+.|.|++|+|||||+..+++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987653
No 411
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.68 E-value=0.53 Score=44.77 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCeEeecCCCCCChHHHHHHHHhh------cCCCeEEEEeec-ccc-hhhhHHhhhcccccccCCCCCcCCCcceeEEEE
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKY------SNSDTVVYVGCG-ERG-NEMAEVLMDFPQLTMTLPDGREESVMKRTTLVA 316 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~------~~~d~vV~~~iG-er~-~ev~~~~~~f~~~~~~~~~~~~~~~l~~t~vv~ 316 (369)
..-..+.|++|+|||+++..+++. .++|+..+..-+ .++ .+++++++.+. ..|. .-+|.+++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~--~~p~-------~~~~kvviI 88 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN--YSPE-------LYTRKYVIV 88 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT--SCCS-------SSSSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh--hccc-------cCCceEEEe
Confidence 346888999999999999999985 256877766544 333 35777777651 1111 124677777
Q ss_pred eCCCCCHHhHhhhhHHHHHHHHHHHHCCCcEEE--EecchH
Q 017581 317 NTSNMPVAAREASIYTGITIAEYFRDMGYNVSM--MADSTS 355 (369)
Q Consensus 317 ~t~~~~~~~r~~a~~~a~tiAEyfr~~G~~VLl--i~Dslt 355 (369)
.-++.. ...++-++-.++.+--.++.+ +.++..
T Consensus 89 dead~l------t~~a~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 89 HDCERM------TQQAANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp TTGGGB------CHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred ccHHHh------CHHHHHHHHHHHhCCCCCeEEEEEECChH
Confidence 554432 233455566777653334443 344443
No 412
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.67 E-value=0.092 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 413
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.67 E-value=0.067 Score=57.76 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.5
Q ss_pred cccCCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 241 pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
.+.++..++|+|++|||||+|++.|++..+..
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678889999999999999999999876543
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.086 Score=44.97 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=21.5
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+-=+++|+|++|+|||||++.+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998854
No 415
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.63 E-value=0.071 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|.+|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 416
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.58 E-value=0.083 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999988754
No 417
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.56 E-value=0.42 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++..+.+.|++|+||||++..+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 5778999999999999999988754
No 418
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.55 E-value=0.2 Score=45.65 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.1
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC-C-eEEEEeecccc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS-D-TVVYVGCGERG 283 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~-d-~vV~~~iGer~ 283 (369)
.+.-+.|.|++|||||+|++.|++.... + -+++.-|..-.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 3467999999999999999999987643 2 35666666543
No 419
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.52 E-value=0.084 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988754
No 420
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.52 E-value=0.12 Score=51.05 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.9
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+..|+..+|+|++|+|||||+..|...
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 567899999999999999999988653
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.52 E-value=0.096 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred CeEeecCCCCCChHHHHHHHHhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
=+++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998765
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.51 E-value=0.11 Score=45.07 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||+..+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988754
No 423
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=91.51 E-value=0.077 Score=58.24 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=26.2
Q ss_pred eeecc-ccccCCCeEeecCCCCCChHHHHH
Q 017581 235 VLDAL-FPSVLGGTCAIPGAFGCGKTVISQ 263 (369)
Q Consensus 235 aID~l-~pi~~GQr~~Ifg~sG~GKstLl~ 263 (369)
.++.+ +.|.+|+.++|.|++|+|||||+.
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHH
Confidence 46677 999999999999999999999973
No 424
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.50 E-value=0.081 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.5
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999988754
No 425
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.47 E-value=0.064 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|.+|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999887654
No 426
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.43 E-value=0.17 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
++..+.|.|.+|+||||+++.++..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999875
No 427
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.40 E-value=0.15 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..-++|.|++|||||+|+..+++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999876
No 428
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.39 E-value=0.093 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.6
Q ss_pred CeEeecCCCCCChHHHHHHHHhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
=+++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 37999999999999999998764
No 429
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.39 E-value=0.094 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 89999999999999999998763
No 430
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.37 E-value=0.1 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.5
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||+..+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988754
No 431
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.35 E-value=0.14 Score=51.09 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
.+.-+++.||+|||||+|+..+|+..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 4566999999999999999999998763
No 432
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.31 E-value=0.11 Score=45.82 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|+.|+|++|+|||+|+..+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999987653
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.30 E-value=0.092 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.3
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998865
No 434
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.27 E-value=0.14 Score=47.80 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=26.5
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeec
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCG 280 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iG 280 (369)
+-+.|.|++|+|||+|+..+++..... ++|.-+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEEch
Confidence 589999999999999999998876544 3444433
No 435
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.26 E-value=0.099 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|.+|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999988643
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.23 E-value=0.055 Score=45.66 Aligned_cols=25 Identities=32% Similarity=0.158 Sum_probs=21.5
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~ 267 (369)
.+.=+++|+|++|+|||||+..+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998874
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.21 E-value=0.099 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||+|+..+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999988653
No 438
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.20 E-value=0.068 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=9.5
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||+..+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999987654
No 439
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.18 E-value=0.1 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999987543
No 440
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.16 E-value=0.12 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEeecCCCCCChHHHHHHHHh
Q 017581 247 TCAIPGAFGCGKTVISQALSK 267 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~ 267 (369)
|+.|+|++|+|||+|++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
No 441
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.15 E-value=0.1 Score=52.11 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=27.3
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc---CCCe-EEEEeec
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCG 280 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~---~~d~-vV~~~iG 280 (369)
+.-+.|.|++|||||||+..|++.. .++. ++|.-+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 5779999999999999999998765 2233 5555443
No 442
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.11 E-value=0.15 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.9
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcC
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
-|++|+|++|+||||++..|++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987543
No 443
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.03 E-value=0.1 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.2
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHH
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
+.+..| -.+|+|++|+|||||+..|.
T Consensus 19 i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 19 IEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 556677 67799999999999999875
No 444
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.03 E-value=0.18 Score=50.95 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.8
Q ss_pred CeEeecCCCCCChHHHHHHHHhhcCCCeEEE
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~ 276 (369)
..+.++|++|||||+|++.+|+..+...+.+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 4599999999999999999999887654433
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.94 E-value=0.18 Score=45.48 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=32.0
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhcC-CCeEEEEeecccchhhhHHhhh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYSN-SDTVVYVGCGERGNEMAEVLMD 292 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~~-~d~vV~~~iGer~~ev~~~~~~ 292 (369)
.+|-.+.|-|++|+||||++..++.... .+.-++..--..+.+..+.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~ 54 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRE 54 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHH
Confidence 3688999999999999999999887543 3432222222334444444444
No 446
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.94 E-value=0.11 Score=45.10 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|.+|+|||||+..+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998764
No 447
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.88 E-value=0.11 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
=|++|+|.+|+|||||+..+.++.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC
Confidence 379999999999999999887543
No 448
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.81 E-value=0.12 Score=49.12 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.1
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999998764
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.78 E-value=0.19 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
-|.=++|.|+||+|||||+..++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999999987754
No 450
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.76 E-value=0.14 Score=48.21 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=21.2
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+.|.|++|+|||+|+..+++..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 449999999999999999998764
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.76 E-value=0.095 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.050 Sum_probs=21.3
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.=+++|+|++|+|||+|++.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3347999999999999999998754
No 452
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.73 E-value=0.12 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|||||||++.+.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7899999999999999999864
No 453
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.73 E-value=0.058 Score=45.05 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=27.3
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEeecc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE 281 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~iGe 281 (369)
.+.-+.|.|++|||||+|++.|++... -+++.-|..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~ 61 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVE 61 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC--CeEEechhh
Confidence 456699999999999999999988765 344444443
No 454
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.68 E-value=0.12 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||+|+..+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 79999999999999999887643
No 455
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.65 E-value=0.11 Score=47.14 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-+++|+|.+|+|||||+..+.+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987653
No 456
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.65 E-value=0.14 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
|+.|+|++|+|||+|+..+++..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 79999999999999999887543
No 457
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.64 E-value=0.14 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
++.-+.|+||+|+|||+|+..+|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 455789999999999999999998764
No 458
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.56 E-value=0.11 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999988754
No 459
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.52 E-value=0.14 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+|+-..|.|+.|+||||++..++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 5788899999999999999766543
No 460
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.51 E-value=0.13 Score=49.53 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred eeeecc-ccccCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 234 RVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 234 ~aID~l-~pi~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+++.+ +.+. +++|+|++|+|||||++.+.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 455544 3443 8999999999999999999984
No 461
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.50 E-value=0.11 Score=44.79 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.5
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|+.|+|++|+|||+|++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999977653
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.47 E-value=0.12 Score=45.42 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.0
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-++.|+|.+|+|||||+..+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999887653
No 463
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.40 E-value=0.18 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+..++|.|++|+||||+++.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 464
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.38 E-value=0.11 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++|+|.+|+|||||++.+.++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999988653
No 465
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.38 E-value=0.14 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.4
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHH
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALS 266 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia 266 (369)
+++.+| ..+|+|++|+|||+|+..|.
T Consensus 20 l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 20 IGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred EecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 567778 99999999999999999886
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.29 E-value=0.16 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|++|+|||||+..+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999987653
No 467
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.25 E-value=0.073 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=4.6
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||+..+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988765
No 468
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.21 E-value=0.11 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.2
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+.++|.|++|+|||||++.|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999998764
No 469
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.14 E-value=0.14 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.4
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
++.|+|++|+|||+|+..+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999887543
No 470
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.11 E-value=0.17 Score=46.32 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=21.2
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
..+|-.+.|-|++|+||||+++.++...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887654
No 471
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.06 E-value=0.24 Score=50.35 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
...-+.|.|++|||||+|+..+++..+..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34679999999999999999999987543
No 472
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.04 E-value=0.26 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.++.+.|.|++||||||++..++..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999987754
No 473
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.02 E-value=0.17 Score=46.74 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|.+|||||||++.+.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999864
No 474
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.02 E-value=0.17 Score=47.94 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC--CCeEEEEeecc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGE 281 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~--~d~vV~~~iGe 281 (369)
+|+.++|.|++|+||||++..++.... ..-+.+..+-.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 899999999999999999998886542 23355554443
No 475
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.99 E-value=0.11 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
..-+.|.|++|||||+|++.+++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34499999999999999999998764
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.95 E-value=0.21 Score=48.15 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc----CCCeEEEEeecc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS----NSDTVVYVGCGE 281 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~----~~d~vV~~~iGe 281 (369)
.|.-++|.|+||+|||||+..+++.. ..|.+.+...+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~~ 184 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISK 184 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESSS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcCC
Confidence 57889999999999999999887643 235555544443
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.91 E-value=0.11 Score=49.03 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=18.6
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+.-.++|-|++|+||||+++.++..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998874
No 478
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.85 E-value=0.19 Score=44.16 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.3
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.++|.|++|+|||||+..+++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999987754
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.85 E-value=0.16 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
.+++|+|.+|+|||||++.+.++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 579999999999999999988654
No 480
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.76 E-value=0.14 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred CeEeecCCCCCChHHHHHHHHhh
Q 017581 246 GTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
-.++|.|++|+||||+++.++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 36999999999999999999853
No 481
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.76 E-value=0.86 Score=43.88 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.0
Q ss_pred cCCCeEeecCCCCCChHHHHHHHHhh
Q 017581 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 243 ~~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+.-+++|.|.+|+|||||+..++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999987754
No 482
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.73 E-value=0.071 Score=46.75 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCeEeecCCCCCChHHHHHHHHhhc
Q 017581 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 245 GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
--+++|+|.+|+|||||++.+.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998764
No 483
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.71 E-value=0.077 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.6
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
|++|+|.+|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999987743
No 484
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.68 E-value=0.21 Score=50.80 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=27.9
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcCCCeEEEEee
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC 279 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~d~vV~~~i 279 (369)
+....-++|.|++|||||+|++.|++..+.. +++.-|
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~-fv~vn~ 271 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAF-FFLING 271 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSE-EEEEEH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 3445569999999999999999999887542 444443
No 485
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.63 E-value=0.15 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhc
Q 017581 247 TCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++|+|.+|||||||++.+.++.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 486
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.57 E-value=0.17 Score=46.24 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.7
Q ss_pred ccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 242 i~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
+.+...++|.||+|+|||+++..|++....
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445456999999999999999999987643
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.54 E-value=0.17 Score=45.69 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhcC
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
+|..+.|-|..|+||||+++.+++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998763
No 488
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.53 E-value=1.1 Score=42.68 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.6
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
-..+.|++|+|||+++..+++.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHH
Confidence 4788999999999999998865
No 489
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.53 E-value=0.19 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.8
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.+.|.|++|+|||||+..+++..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 490
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.52 E-value=0.21 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.9
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+.--+.|+||+|+||+|++..|++.-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44457789999999999999887643
No 491
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.44 E-value=0.16 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|.+|||||||++.+.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999865
No 492
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.34 E-value=0.18 Score=44.27 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+--++.|+|.+|+|||||+..+++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33478999999999999999887653
No 493
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.33 E-value=0.1 Score=44.47 Aligned_cols=25 Identities=24% Similarity=0.021 Sum_probs=21.1
Q ss_pred CCCeEeecCCCCCChHHHHHHHHhh
Q 017581 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 244 ~GQr~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+-=+++|+|++|+|||||++.+.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3448999999999999999988643
No 494
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.21 E-value=0.19 Score=51.42 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.2
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhcCC
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~~~ 271 (369)
..+..|.-+.|.|++|||||+|++.|++....
T Consensus 36 ~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 36 LAALSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred HHHhcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 44566789999999999999999999987643
No 495
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.04 E-value=0.22 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.0
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
.+.|.|++|+||||+++.++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999874
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.04 E-value=0.2 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEeecCCCCCChHHHHHHHHhhcC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSN 270 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~ 270 (369)
.++|.|++|+|||||+..|+...+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 497
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.86 E-value=0.24 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred eEeecCCCCCChHHHHHHHHhhcCCC
Q 017581 247 TCAIPGAFGCGKTVISQALSKYSNSD 272 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~~~~d 272 (369)
-+++.||+|||||+|++.+|+..+..
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 38999999999999999999887653
No 498
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.82 E-value=0.18 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.3
Q ss_pred eEeecCCCCCChHHHHHHHHhh
Q 017581 247 TCAIPGAFGCGKTVISQALSKY 268 (369)
Q Consensus 247 r~~Ifg~sG~GKstLl~~ia~~ 268 (369)
+++|+|++|+|||||++.|.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3599999999999999998654
No 499
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=88.79 E-value=0.19 Score=53.10 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=25.2
Q ss_pred ccccCCCeEeecCCCCCChHHHHHHHHhhc
Q 017581 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 240 ~pi~~GQr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
+++.+|.+++|+|++|+|||||+..++++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 356789999999999999999999988543
No 500
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.67 E-value=0.18 Score=46.43 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.7
Q ss_pred CeEeecCCCCCChHHHHHHHHhhc
Q 017581 246 GTCAIPGAFGCGKTVISQALSKYS 269 (369)
Q Consensus 246 Qr~~Ifg~sG~GKstLl~~ia~~~ 269 (369)
-+++|+|.+|+|||||++.+.+..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 489999999999999999998764
Done!