BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017582
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R1A|3 Chain 3, Crystal Structure Of Human Rhinovirus Serotype 1a (Hrv1a)
pdb|2HWD|3 Chain 3, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|2HWE|3 Chain 3, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|2HWF|3 Chain 3, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
Length = 238
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 134 FSITVRLSKQPLHSLLVSSIITGYTLWNAEYRISLM 169
FSI V ++ PL + L+ I + YT W R S M
Sbjct: 83 FSIKVDITSTPLATTLIGEIASYYTHWTGSLRFSFM 118
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 25 NPLHLPRAPFS--RNHHHHHDVIRWPTRRGLFPASYSATVSCLSSG 68
NP ++P +S R H D I + R G +PA+ T C S+G
Sbjct: 251 NP-YIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG 295
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 25 NPLHLPRAPFS--RNHHHHHDVIRWPTRRGLFPASYSATVSCLSSG 68
NP ++P +S R H D I + R G +PA+ T C S+G
Sbjct: 251 NP-YIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG 295
>pdb|1FPN|3 Chain 3, Human Rhinovirus Serotype 2 (Hrv2)
pdb|1V9U|3 Chain 3, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
pdb|3DPR|C Chain C, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
pdb|3TN9|3 Chain 3, X-Ray Structure Of The Hrv2 Empty Capsid (B-Particle)
pdb|3VDD|C Chain C, Structure Of Hrv2 Capsid Complexed With Antiviral Compound
Bta798
Length = 237
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 130 PSDQFSITVRLSKQPLHSLLVSSIITGYTLWNAEYRISLM 169
P FSI ++ QPL + L+ I + +T W R S M
Sbjct: 79 PDKIFSIRTDVASQPLATTLIGEISSYFTHWTGSLRFSFM 118
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 25 NPLHLPRAPFS--RNHHHHHDVIRWPTRRGLFPASYSATVSCLSSG 68
NP ++P +S R H D I + R G +PA+ T C S+G
Sbjct: 253 NP-YIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG 297
>pdb|1AYN|3 Chain 3, Human Rhinovirus 16 Coat Protein
pdb|1AYM|3 Chain 3, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1D3E|3 Chain 3, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
pdb|1C8M|3 Chain 3, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|C Chain C, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|C Chain C, The Structure Of Rhinovirus 16
pdb|1ND3|C Chain C, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 238
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 129 LPSDQFSITVRLSKQPLHSLLVSSIITGYTLWNAEYRISLM 169
L + F+I V ++ PL + L+ I + +T W R S M
Sbjct: 78 LAEEIFAIKVDIASHPLATTLIGEIASYFTHWTGSLRFSFM 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,332,417
Number of Sequences: 62578
Number of extensions: 426806
Number of successful extensions: 17558
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 17504
Number of HSP's gapped (non-prelim): 71
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)