BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017582
(369 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q927P4|CAS9_LISIN CRISPR-associated endonuclease Cas9 OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=cas9 PE=1 SV=1
Length = 1334
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 99 EPLDNSVISKGISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLHSLLVSSIIT-GY 157
+P D +I K E AKDS ++ + S+L L+ D+++ +K ++++SSIIT
Sbjct: 260 KPFD--LIEKSDIECAKDSYEEDLESLLALI-GDEYAELFVAAKNAYSAVVLSSIITVAE 316
Query: 158 TLWNAEYRISLMRNFDISVDGLKRLNFSVEGEVLDKHCEE 197
T NA+ S++ FD + L L ++ L KH EE
Sbjct: 317 TETNAKLSASMIERFDTHEEDLGELKAFIKLH-LPKHYEE 355
>sp|P07210|POLG_HRV8A Genome polyprotein OS=Human rhinovirus A serotype 89 (strain
41467-Gallo) PE=3 SV=3
Length = 2164
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 129 LPSDQFSITVRLSKQPLHSLLVSSIITGYTLWNAEYRISLM 169
L + FSI V ++ QPL + L+ + + YT W R S M
Sbjct: 414 LAKEVFSIPVDIASQPLATTLIGELASYYTHWTGSLRFSFM 454
>sp|C5DN02|ARO1_LACTC Pentafunctional AROM polypeptide OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=ARO1
PE=3 SV=1
Length = 1579
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 65 LSSGGGVSNDDFVSTRKSNFDRGFRVIANMLKRIEPLDNSVISKGISESAKDSMKQTISS 124
++ GGGV D + S F RG RV+ + +D+S+ K +A D+ +
Sbjct: 106 IAVGGGVIGD-MIGYVASTFMRGVRVVQVPTSLLAMVDSSIGGK----TAVDT--PLGKN 158
Query: 125 MLGLLPSDQFS-ITVR-LSKQPLHSLL--VSSIITGYTLWNAEYRISLMRNFDI---SVD 177
+G QF + ++ L P + ++ +I +WNAE L N D+ V+
Sbjct: 159 FIGAFWQPQFVFVDIKWLETLPKREFINGIAEVIKTACIWNAEEFARLEENADLFLQVVN 218
Query: 178 GLKRLNFSVEGEV 190
G K SV+G+V
Sbjct: 219 GSKTTQVSVQGQV 231
>sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B PE=1 SV=3
Length = 2157
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 134 FSITVRLSKQPLHSLLVSSIITGYTLWNAEYRISLM 169
F+I V ++ QPL + L+ I + YT W R S M
Sbjct: 415 FAIKVDITSQPLATTLIGEIASYYTHWTGSLRFSFM 450
>sp|A3DIZ4|RPOB_CLOTH DNA-directed RNA polymerase subunit beta OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=rpoB PE=3 SV=1
Length = 1250
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 177 DGLKRLNFSVEGEVLDKHCEESENEGGEISVEDLEISPQVLGDLSHDALN 226
D L+ LN ++EG + + E + G EI+ EDLE+ L DL+ D +N
Sbjct: 1174 DDLEELNVNIEGREDEVNFNEFNDIGEEITDEDLEVEDFDLQDLNDDDIN 1223
>sp|B9LD91|ARLY_CHLSY Argininosuccinate lyase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=argH PE=3 SV=1
Length = 461
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 305 ASNNFKGHSIFTNAENLEEVNNE----NCHSID--TSRDYLAKLLFWCMLLGHHL 353
+ G+S+ E L E+ +E + +S+D + RD++A++LF C L+G HL
Sbjct: 197 GAGALAGNSLGVERERLTELLDEFDELSANSLDAVSDRDFVAEVLFACALIGVHL 251
>sp|A9WJR8|ARLY_CHLAA Argininosuccinate lyase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=argH PE=3 SV=1
Length = 461
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 305 ASNNFKGHSIFTNAENLEEVNNE----NCHSID--TSRDYLAKLLFWCMLLGHHL 353
+ G+S+ E L E+ +E + +S+D + RD++A++LF C L+G HL
Sbjct: 197 GAGALAGNSLGVERERLTELLDEFDELSANSLDAVSDRDFVAEVLFACALIGVHL 251
>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana
GN=At5g16730 PE=1 SV=1
Length = 853
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 208 EDLEISPQVLGDLSHDA---LNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCR 259
EDLE+S Q LG + + ++KL+S+L VKEE K++ + E D T R
Sbjct: 387 EDLEVSEQRLGSVEEEVSKNEKEVEKLKSELETVKEE----KNRALKKEQDATSR 437
>sp|Q2LUH7|SURE_SYNAS 5'-nucleotidase SurE OS=Syntrophus aciditrophicus (strain SB)
GN=surE PE=3 SV=1
Length = 266
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 154 ITGYTLWNAEYRISLMRNFDISVDGLKRLNFSVEGEVLDKHCEESENEGGEISVEDLEIS 213
I GY + + + L+ +FD VD +RL + + GE EE +++G +S + I+
Sbjct: 173 IKGYAVTR-QGKARLIESFDRRVDPRERLYYWLAGETQLSEQEEPDSDGSALSRGMISIT 231
Query: 214 PQVLGDLSHDALNYIQKLQS 233
P +DAL+ ++ L S
Sbjct: 232 PIYHDMTRYDALDGLKALLS 251
>sp|Q03983|YD179_YEAST Uncharacterized protein YDR179W-A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR179W-A PE=1 SV=2
Length = 463
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 151 SSIITGYTLWNAEYRISLMRNFDISVDGLKRLNFSVEGEVLDKHCEESENEGGEISVEDL 210
SS+IT Y NA + + F +S G RLN G++ +K C ++N G ++S E
Sbjct: 10 SSLITKYRRPNASNQ---YKGF-LSKKGHTRLNSKSSGDIWEKDCSHTKNSGNDVSFE-- 63
Query: 211 EISPQVLGDLSHDALNYIQKL 231
+ D++ Y++ L
Sbjct: 64 -------SEFEKDSVEYLRDL 77
>sp|Q6FVJ1|RTC1_CANGA Restriction of telomere capping protein 1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RTC1 PE=3 SV=1
Length = 1336
Score = 31.6 bits (70), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 165 RISLMRNFDISVDGLKRLNFSVEGEVLDKHCEESENEGGEISVEDLEISPQVLGDLSHDA 224
R LM+ FDIS + + ++ ++ IS++ SP VL D S
Sbjct: 766 RSDLMKRFDISEN-------ATWANIVKDKSNKTRERANSISIKQ---SPIVLSDESEIK 815
Query: 225 LNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIE 284
IQKL+S +NVK E N K ++ +KT +N EY L +V+ + +S
Sbjct: 816 SPTIQKLESGDNNVKYESNITKE----IQQEKT-KNFNPEYRINLLLELVESSNHNAS-- 868
Query: 285 VEEIIHQLVQNILQRFFKDDASNNFKGHSIFTNAENLEEV 324
V II L + +D + K +S F+ E EE+
Sbjct: 869 VYSIIDDLPNFKIWMLIRDSLLWDIKMYSSFSENETPEEL 908
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,766,848
Number of Sequences: 539616
Number of extensions: 5545452
Number of successful extensions: 20703
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 20639
Number of HSP's gapped (non-prelim): 145
length of query: 369
length of database: 191,569,459
effective HSP length: 119
effective length of query: 250
effective length of database: 127,355,155
effective search space: 31838788750
effective search space used: 31838788750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)