Query 017582
Match_columns 369
No_of_seqs 163 out of 218
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 100.0 5.7E-32 1.2E-36 220.0 7.7 85 89-173 1-86 (86)
2 PF05542 DUF760: Protein of un 99.9 2.7E-27 5.9E-32 192.6 9.9 86 260-367 1-86 (86)
3 PF04977 DivIC: Septum formati 58.8 12 0.00026 28.8 3.2 41 229-279 20-62 (80)
4 PF04508 Pox_A_type_inc: Viral 44.0 28 0.00061 22.6 2.6 20 228-247 3-22 (23)
5 PF07531 TAFH: NHR1 homology t 32.3 40 0.00087 28.8 2.5 28 273-300 12-40 (96)
6 COG1080 PtsA Phosphoenolpyruva 27.8 1.1E+02 0.0025 33.5 5.6 40 256-295 451-492 (574)
7 PF06698 DUF1192: Protein of u 25.6 1.1E+02 0.0023 24.0 3.7 31 216-246 17-48 (59)
8 PRK00888 ftsB cell division pr 22.4 1.3E+02 0.0027 25.7 3.9 59 229-310 30-88 (105)
9 PF06005 DUF904: Protein of un 22.4 2E+02 0.0044 23.1 4.8 54 224-300 16-69 (72)
10 KOG1319 bHLHZip transcription 20.7 80 0.0017 30.4 2.5 32 223-254 109-140 (229)
11 KOG4119 G protein gamma subuni 20.6 93 0.002 25.3 2.5 39 228-272 9-47 (71)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.97 E-value=5.7e-32 Score=220.02 Aligned_cols=85 Identities=36% Similarity=0.564 Sum_probs=83.6
Q ss_pred hHHHHHhhhcCCchhhhhcccCCHHHHHHHHHHHHHHhcCC-CCCCceeEEEeccccHHHHHHHHHhHhHhhcchhhhhh
Q 017582 89 RVIANMLKRIEPLDNSVISKGISESAKDSMKQTISSMLGLL-PSDQFSITVRLSKQPLHSLLVSSIITGYTLWNAEYRIS 167 (369)
Q Consensus 89 n~L~~yv~s~~Pe~~~~~sk~~Spev~e~i~~~v~~lLG~l-p~~~f~v~i~tsre~L~~LlassmMtGYfLrnaE~Rl~ 167 (369)
|.||+||++++|+.+++|+++|||||+|+|++||++|||.+ |+++|+++|+|+|++||+||+|+|||||||||||||++
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~ 80 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE 80 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 017582 168 LMRNFD 173 (369)
Q Consensus 168 Le~sl~ 173 (369)
||++|+
T Consensus 81 Le~sL~ 86 (86)
T PF05542_consen 81 LERSLK 86 (86)
T ss_pred HHHhcC
Confidence 999985
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.94 E-value=2.7e-27 Score=192.63 Aligned_cols=86 Identities=38% Similarity=0.585 Sum_probs=81.6
Q ss_pred chHHHHhhcCChHHHHhhcCCCCHHHHHHHHHHHHHHhhccccCCcccCCCCCccccccccccccccCCcceEEeCHHHH
Q 017582 260 NSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQLVQNILQRFFKDDASNNFKGHSIFTNAENLEEVNNENCHSIDTSRDYL 339 (369)
Q Consensus 260 N~LL~YlrSL~Pe~L~~Ls~~~SpEV~eaI~k~Vq~LLG~l~~~~~~sk~~P~s~~~~~g~v~~~~d~f~~~I~tsrd~L 339 (369)
|+|++||++++||.++++++++||||+|+|+++|++++|.+. | +++|+++|++++++|
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~-p---------------------~~~~~~~i~~s~~~L 58 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS-P---------------------SDQFNVTIQTSRENL 58 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC-C---------------------cccCcceeEECHHHH
Confidence 789999999999999999999999999999999999999981 2 478899999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHhhhc
Q 017582 340 AKLLFWCMLLGHHLRGLENRLHLTCAVG 367 (369)
Q Consensus 340 arLLfwaMm~GyfLR~~E~RleL~~~L~ 367 (369)
|+||+||||+|||||++|+|++|+++|.
T Consensus 59 a~L~~~~mm~GYfLr~~E~R~~Le~sL~ 86 (86)
T PF05542_consen 59 AQLLAWSMMTGYFLRNAEQRLELERSLK 86 (86)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999984
No 3
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.75 E-value=12 Score=28.81 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=27.7
Q ss_pred HHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhcC--ChHHHHhhcC
Q 017582 229 QKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFL--DPYMVKELSQ 279 (369)
Q Consensus 229 ~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrSL--~Pe~L~~Ls~ 279 (369)
..++.++..+++++..++.+ ..+|...+..+ +|+.+.++|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e----------~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKE----------NEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCHHHHHHHHH
Confidence 46788888888888888753 45566666665 6666655554
No 4
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=43.97 E-value=28 Score=22.56 Aligned_cols=20 Identities=15% Similarity=0.531 Sum_probs=16.9
Q ss_pred HHHHHhhHHhHHHHHHhhhh
Q 017582 228 IQKLQSDLSNVKEELNSMKH 247 (369)
Q Consensus 228 I~~Lqsel~sl~keL~~~k~ 247 (369)
|..|+.+|..+++||.+.++
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999998753
No 5
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=32.26 E-value=40 Score=28.78 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=24.8
Q ss_pred HHHhhcCC-CCHHHHHHHHHHHHHHhhcc
Q 017582 273 MVKELSQP-SSIEVEEIIHQLVQNILQRF 300 (369)
Q Consensus 273 ~L~~Ls~~-~SpEV~eaI~k~Vq~LLG~l 300 (369)
+|.+|+.. .||||.+.++.+|++|+.+-
T Consensus 12 tLi~las~~~spev~~~Vr~LV~~L~~~~ 40 (96)
T PF07531_consen 12 TLIQLASDKQSPEVGENVRELVQNLVDGK 40 (96)
T ss_dssp HHHHHHCCSC-CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHcCC
Confidence 78899999 99999999999999999873
No 6
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=27.77 E-value=1.1e+02 Score=33.54 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=35.5
Q ss_pred ccccchHHHHhhcCCh--HHHHhhcCCCCHHHHHHHHHHHHH
Q 017582 256 KTCRNSLLEYLRFLDP--YMVKELSQPSSIEVEEIIHQLVQN 295 (369)
Q Consensus 256 ~~~~N~LL~YlrSL~P--e~L~~Ls~~~SpEV~eaI~k~Vq~ 295 (369)
.-..|||-+|....|. +.|+.+.++..|-|..+|+++|++
T Consensus 451 SIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ 492 (574)
T COG1080 451 SIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDA 492 (574)
T ss_pred eecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHH
Confidence 4578999999998775 459999999999999999999985
No 7
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.64 E-value=1.1e+02 Score=24.00 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.4
Q ss_pred ccCCCCh-hHHHHHHHHHhhHHhHHHHHHhhh
Q 017582 216 VLGDLSH-DALNYIQKLQSDLSNVKEELNSMK 246 (369)
Q Consensus 216 ~lg~ls~-eA~~YI~~Lqsel~sl~keL~~~k 246 (369)
++..+|+ |-.+||..|++||..++.++..-+
T Consensus 17 dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 17 DLSLLSVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665 578899999999999998887644
No 8
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.44 E-value=1.3e+02 Score=25.65 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=37.1
Q ss_pred HHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhcCChHHHHhhcCCCCHHHHHHHHHHHHHHhhccccCCcccC
Q 017582 229 QKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQLVQNILQRFFKDDASNN 308 (369)
Q Consensus 229 ~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrSL~Pe~L~~Ls~~~SpEV~eaI~k~Vq~LLG~l~~~~~~sk 308 (369)
..++.++..+++|+.++++++ ..|..=|..|... .+.+++.+..-||....+++--.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n----------~~L~~eI~~L~~~-------------~dyiEe~AR~~Lg~vk~gEivy~ 86 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARN----------DQLFAEIDDLKGG-------------QEAIEERARNELGMVKPGETFYR 86 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhCc-------------HHHHHHHHHHHcCCCCCCCEEEE
Confidence 457888888888888887654 3444433333321 26777778888888755555443
Q ss_pred CC
Q 017582 309 FK 310 (369)
Q Consensus 309 ~~ 310 (369)
++
T Consensus 87 ~~ 88 (105)
T PRK00888 87 IV 88 (105)
T ss_pred eC
Confidence 33
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.40 E-value=2e+02 Score=23.06 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhcCChHHHHhhcCCCCHHHHHHHHHHHHHHhhcc
Q 017582 224 ALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPYMVKELSQPSSIEVEEIIHQLVQNILQRF 300 (369)
Q Consensus 224 A~~YI~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrSL~Pe~L~~Ls~~~SpEV~eaI~k~Vq~LLG~l 300 (369)
|.+=|..|+-++..++++-.+++. .+..|..-...|. +=.++....+.+|||.+
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~----------e~~~L~~en~~L~-------------~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKE----------ENEELKEENEQLK-------------QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhh
Confidence 455566666666655555444332 2333443333322 55677888888999886
No 10
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=20.71 E-value=80 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhhHHhHHHHHHhhhhhhhcccc
Q 017582 223 DALNYIQKLQSDLSNVKEELNSMKHKNMLMES 254 (369)
Q Consensus 223 eA~~YI~~Lqsel~sl~keL~~~k~~~~~l~~ 254 (369)
-+-+||++|..++..-++|+..+..+.++|.+
T Consensus 109 ksidyi~~L~~~k~kqe~e~s~L~k~vtAL~i 140 (229)
T KOG1319|consen 109 KTIDYIQFLHKEKKKQEEEVSTLRKDVTALKI 140 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998888888888777666543
No 11
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=20.60 E-value=93 Score=25.26 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhcCChH
Q 017582 228 IQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPY 272 (369)
Q Consensus 228 I~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrSL~Pe 272 (369)
+.++++.+.+|+.|+...+.+.+ ...-+|++|+-...++
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS------~a~~el~~y~E~~~~~ 47 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVS------KAAAELLEYCETHATE 47 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHH------HHHHHHHHHHHhcCcc
Confidence 56778888888888888765544 2457888888766554
Done!