Query 017582
Match_columns 369
No_of_seqs 163 out of 218
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkp_B MAX protein, MYC proto- 82.1 0.88 3E-05 35.5 3.0 31 222-252 43-73 (83)
2 1hlo_A Protein (transcription 80.6 1.3 4.3E-05 34.4 3.4 27 222-248 53-79 (80)
3 1am9_A Srebp-1A, protein (ster 65.1 5.4 0.00019 31.1 3.6 27 222-248 46-72 (82)
4 1nkp_A C-MYC, MYC proto-oncoge 61.5 6.5 0.00022 31.2 3.5 31 222-252 48-78 (88)
5 1nlw_A MAD protein, MAX dimeri 57.4 7.1 0.00024 30.5 3.0 29 222-250 43-71 (80)
6 3he5_A Synzip1; heterodimeric 43.7 22 0.00077 25.2 3.4 35 226-267 3-37 (49)
7 4ath_A MITF, microphthalmia-as 40.6 22 0.00076 28.4 3.4 26 222-247 35-60 (83)
8 1dh3_A Transcription factor CR 31.7 38 0.0013 24.6 3.2 27 225-251 21-47 (55)
9 1zme_C Proline utilization tra 30.5 42 0.0014 24.1 3.3 24 224-247 42-65 (70)
10 4ati_A MITF, microphthalmia-as 29.0 25 0.00084 29.3 2.0 24 222-245 70-93 (118)
11 3coq_A Regulatory protein GAL4 26.7 1.3E+02 0.0045 22.3 5.7 23 224-246 43-65 (89)
12 1lj2_A NSP3-C, nonstructural R 25.0 1.7E+02 0.0056 24.5 6.2 68 223-299 10-86 (110)
13 2w72_C Human hemoglobin A; iro 24.3 25 0.00087 28.8 1.2 69 89-157 64-140 (141)
14 2er8_A Regulatory protein Leu3 24.2 47 0.0016 24.1 2.6 23 224-246 47-69 (72)
15 1gd2_E Transcription factor PA 23.3 29 0.001 26.7 1.3 38 225-272 28-65 (70)
16 4dzn_A Coiled-coil peptide CC- 23.1 67 0.0023 21.1 2.8 23 228-250 4-26 (33)
17 3i00_A HIP-I, huntingtin-inter 21.5 71 0.0024 26.8 3.5 34 213-246 27-60 (120)
No 1
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.09 E-value=0.88 Score=35.47 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhhhhcc
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHKNMLM 252 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~~~~l 252 (369)
-.|.+||..|+.++..++.|+.++++++..|
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998765544
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.55 E-value=1.3 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHK 248 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~ 248 (369)
-.|.+||..|+.++..++.++..++++
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 369999999999999999999998764
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=65.09 E-value=5.4 Score=31.14 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHK 248 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~ 248 (369)
-+|.+||..|+.++..+++|...++..
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999998888753
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.47 E-value=6.5 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhhhhcc
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHKNMLM 252 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~~~~l 252 (369)
-.|.+||..|+.+...+..+...+++++..|
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L 78 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999888888887655443
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=57.41 E-value=7.1 Score=30.55 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHKNM 250 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~~~ 250 (369)
-.|.+||..|+.+...+..|...+++++.
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999988888876543
No 6
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=43.69 E-value=22 Score=25.19 Aligned_cols=35 Identities=26% Similarity=0.632 Sum_probs=28.3
Q ss_pred HHHHHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhh
Q 017582 226 NYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLR 267 (369)
Q Consensus 226 ~YI~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~Ylr 267 (369)
+.+.+|+.++.+++.|-.-+|+++. .+.+|..|+.
T Consensus 3 nlvaqlenevaslenenetlkkknl-------hkkdliayle 37 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNL-------HKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcc-------cHHHHHHHHH
Confidence 3567899999999999888887764 4678888874
No 7
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=40.61 E-value=22 Score=28.41 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKH 247 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~ 247 (369)
--|.+||..||.+...++++...+++
T Consensus 35 ~ksvdYI~~Lq~e~~r~~e~e~r~k~ 60 (83)
T 4ath_A 35 KASVDYIRKLQREQQRAKDLENRQKK 60 (83)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998888775
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.68 E-value=38 Score=24.63 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHhHHHHHHhhhhhhhc
Q 017582 225 LNYIQKLQSDLSNVKEELNSMKHKNML 251 (369)
Q Consensus 225 ~~YI~~Lqsel~sl~keL~~~k~~~~~ 251 (369)
+.|+..|+.++..|+.|-..++.....
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998888887765443
No 9
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.52 E-value=42 Score=24.13 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHhHHHHHHhhhh
Q 017582 224 ALNYIQKLQSDLSNVKEELNSMKH 247 (369)
Q Consensus 224 A~~YI~~Lqsel~sl~keL~~~k~ 247 (369)
...||+.|+.++..|+++|..++.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999988764
No 10
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=28.98 E-value=25 Score=29.30 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSM 245 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~ 245 (369)
..|.+||..|+.++..++++....
T Consensus 70 ~~aieYIk~Lq~~~~~l~~~~~~~ 93 (118)
T 4ati_A 70 KASVDYIRKLQREQQRAKDLENRQ 93 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999998887654443
No 11
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.70 E-value=1.3e+02 Score=22.34 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhHHhHHHHHHhhh
Q 017582 224 ALNYIQKLQSDLSNVKEELNSMK 246 (369)
Q Consensus 224 A~~YI~~Lqsel~sl~keL~~~k 246 (369)
...|+..|+.++..++..|..+.
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc
Confidence 46799999999999999888763
No 12
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=25.02 E-value=1.7e+02 Score=24.50 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhcCC--hH-------HHHhhcCCCCHHHHHHHHHHH
Q 017582 223 DALNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLD--PY-------MVKELSQPSSIEVEEIIHQLV 293 (369)
Q Consensus 223 eA~~YI~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrSL~--Pe-------~L~~Ls~~~SpEV~eaI~k~V 293 (369)
.-+++|..||..-..++.+|...- ++--..+-.||+|++ +| +|..+.-.-...+++-|+.++
T Consensus 10 qQQ~~In~lq~~~~klE~dlq~ki---------~slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~aiddiE~~I 80 (110)
T 1lj2_A 10 QQQAHIAELQVYNNKLERDLQNKI---------GSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVI 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchhHhHHHHHH
Confidence 345667777666665555555422 123566778888865 22 233344444556666677777
Q ss_pred HHHhhc
Q 017582 294 QNILQR 299 (369)
Q Consensus 294 q~LLG~ 299 (369)
.+|+--
T Consensus 81 rnlI~D 86 (110)
T 1lj2_A 81 RNLISD 86 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
No 13
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=24.26 E-value=25 Score=28.78 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=51.3
Q ss_pred hHHHHHhhhcCCc--hhhhhc------ccCCHHHHHHHHHHHHHHhcCCCCCCceeEEEeccccHHHHHHHHHhHhH
Q 017582 89 RVIANMLKRIEPL--DNSVIS------KGISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLHSLLVSSIITGY 157 (369)
Q Consensus 89 n~L~~yv~s~~Pe--~~~~~s------k~~Spev~e~i~~~v~~lLG~lp~~~f~v~i~tsre~L~~LlassmMtGY 157 (369)
+.|..+|..++-. .+..++ ....|+-++++.+.+...|...-++.|+..+...|..+...++.+|..||
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~y 140 (141)
T 2w72_C 64 DALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 (141)
T ss_dssp HHHHHHHHTTTSHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555432 333443 46678888888888888888776677888888999999999999999998
No 14
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=24.22 E-value=47 Score=24.11 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhHHhHHHHHHhhh
Q 017582 224 ALNYIQKLQSDLSNVKEELNSMK 246 (369)
Q Consensus 224 A~~YI~~Lqsel~sl~keL~~~k 246 (369)
...||+.|+.++..|+..|..+.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999888753
No 15
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.28 E-value=29 Score=26.70 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhcCChH
Q 017582 225 LNYIQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRFLDPY 272 (369)
Q Consensus 225 ~~YI~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrSL~Pe 272 (369)
.+||..|+.++..+++....+.. .+..|..+|..|..|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~----------en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTL----------ENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 56899999999888776555432 345666676666554
No 16
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.15 E-value=67 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=14.2
Q ss_pred HHHHHhhHHhHHHHHHhhhhhhh
Q 017582 228 IQKLQSDLSNVKEELNSMKHKNM 250 (369)
Q Consensus 228 I~~Lqsel~sl~keL~~~k~~~~ 250 (369)
|..|+.++..++||..++|.+.+
T Consensus 4 iaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777665433
No 17
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.51 E-value=71 Score=26.84 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=28.8
Q ss_pred CccccCCCChhHHHHHHHHHhhHHhHHHHHHhhh
Q 017582 213 SPQVLGDLSHDALNYIQKLQSDLSNVKEELNSMK 246 (369)
Q Consensus 213 ~~~~lg~ls~eA~~YI~~Lqsel~sl~keL~~~k 246 (369)
....+..+-.+|+.||.+|+.+++.|+-||...+
T Consensus 27 lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 27 LKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666788999999999999999999999986
Done!