Query 017582
Match_columns 369
No_of_seqs 163 out of 218
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 16:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017582.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017582hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 75.0 1.3 9.2E-05 31.1 3.6 28 221-248 28-55 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 58.0 3.9 0.00028 30.1 3.5 29 222-250 48-76 (88)
3 d1nkpb_ a.38.1.1 (B:) Max prot 57.3 3.4 0.00025 30.1 3.0 30 222-251 43-72 (83)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 56.0 4.5 0.00033 29.1 3.5 28 222-249 43-70 (79)
5 d1am9a_ a.38.1.1 (A:) SREBP-1a 49.1 6.9 0.0005 28.3 3.5 27 222-248 46-72 (80)
6 d3bzka5 c.55.3.13 (A:325-473) 44.2 14 0.001 29.9 5.1 92 55-152 12-106 (149)
7 d1wmub_ a.1.1.2 (B:) Hemoglobi 33.3 4 0.00029 32.2 -0.1 55 104-158 92-146 (146)
8 d1gg2g_ a.137.3.1 (G:) Transdu 27.9 11 0.00082 25.9 1.5 35 228-268 2-36 (54)
9 d1outb_ a.1.1.2 (B:) Hemoglobi 20.9 4.1 0.0003 32.2 -2.3 50 109-158 97-146 (146)
10 d1spga_ a.1.1.2 (A:) Hemoglobi 16.3 11 0.00083 29.0 -0.6 49 109-157 94-142 (143)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.01 E-value=1.3 Score=31.13 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHhhHHhHHHHHHhhhhh
Q 017582 221 SHDALNYIQKLQSDLSNVKEELNSMKHK 248 (369)
Q Consensus 221 s~eA~~YI~~Lqsel~sl~keL~~~k~~ 248 (369)
=.+|-+||..|+.++..++.|...++..
T Consensus 28 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 28 LRKAIDYIKYLQQVNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999998888753
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.96 E-value=3.9 Score=30.10 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHKNM 250 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~~~ 250 (369)
-.|.+||..|+.++..++.+...+++++.
T Consensus 48 ~~A~~yI~~L~~~~~~l~~~~~~l~~~~~ 76 (88)
T d1nkpa_ 48 KKATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999988888887765443
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.29 E-value=3.4 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhhhhc
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHKNML 251 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~~~~ 251 (369)
-.|.+||..|+.+...+.+++..+++++..
T Consensus 43 ~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~ 72 (83)
T d1nkpb_ 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999988887765443
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.98 E-value=4.5 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHKN 249 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~~ 249 (369)
-.|.+||..|+.++..+.++...++.+.
T Consensus 43 ~~A~~yI~~L~~~~~~l~~~~~~L~~~~ 70 (79)
T d1nlwa_ 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999998888888776543
No 5
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.11 E-value=6.9 Score=28.31 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHhhhhh
Q 017582 222 HDALNYIQKLQSDLSNVKEELNSMKHK 248 (369)
Q Consensus 222 ~eA~~YI~~Lqsel~sl~keL~~~k~~ 248 (369)
..|.+||..|+.+...++++...++..
T Consensus 46 ~~a~~yI~~L~~~~~~L~~e~~~lk~~ 72 (80)
T d1am9a_ 46 RKAIDYIRFLQHSNQKLKQENLSLRTA 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999888887653
No 6
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.16 E-value=14 Score=29.87 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=64.7
Q ss_pred CC-CccceeeeecCCCCCCcccccccCCC--CCCccchHHHHHhhhcCCchhhhhcccCCHHHHHHHHHHHHHHhcCCCC
Q 017582 55 PA-SYSATVSCLSSGGGVSNDDFVSTRKS--NFDRGFRVIANMLKRIEPLDNSVISKGISESAKDSMKQTISSMLGLLPS 131 (369)
Q Consensus 55 ~~-~~~~~~~~~~~~g~~~~~df~~~~~~--~f~~~~n~L~~yv~s~~Pe~~~~~sk~~Spev~e~i~~~v~~lLG~lp~ 131 (369)
|. |...-++|+|.+|-+-..+-+-..+. .-++....|.++++.-.|+.|..=...+|.|+.+.|+..+...
T Consensus 12 Pg~r~gck~AvlD~~G~vld~~viyp~~~~~~~~~a~~~l~~li~k~~p~vIaIGNgTasre~~~~v~~l~~~~------ 85 (149)
T d3bzka5 12 PGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIGNGTASRETDKLAGELIKKY------ 85 (149)
T ss_dssp CCSTTCEEEEEECTTSCEEEEEEECCSTTTCCHHHHHHHHHHHHHHTTCCEEEEESSTTHHHHHHHHHHHHHHC------
T ss_pred CCcccccEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCccHHHHHHHHHHHHHhC------
Confidence 54 55556778899987765544432221 1222346799999999999886545667889888888887752
Q ss_pred CCceeEEEeccccHHHHHHHH
Q 017582 132 DQFSITVRLSKQPLHSLLVSS 152 (369)
Q Consensus 132 ~~f~v~i~tsre~L~~Llass 152 (369)
...++.+.+--|..|++|..|
T Consensus 86 ~~~~i~~~iV~e~gAsvYs~S 106 (149)
T d3bzka5 86 PGMKLTKIMVSEAGASVYSAS 106 (149)
T ss_dssp GGGCCEEEEECCTTHHHHHTS
T ss_pred CCCCcEEEEEeccchhhhhCC
Confidence 234677888999999999765
No 7
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise (Geochelone gigantea) [TaxId: 167804]}
Probab=33.29 E-value=4 Score=32.23 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=47.7
Q ss_pred hhhcccCCHHHHHHHHHHHHHHhcCCCCCCceeEEEeccccHHHHHHHHHhHhHh
Q 017582 104 SVISKGISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLHSLLVSSIITGYT 158 (369)
Q Consensus 104 ~~~sk~~Spev~e~i~~~v~~lLG~lp~~~f~v~i~tsre~L~~LlassmMtGYf 158 (369)
........|+-++.|.+.+-..|...-++.|+..+...|.++-..++.+|..||.
T Consensus 92 ~h~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T d1wmub_ 92 HCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH 146 (146)
T ss_dssp HHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445678899999999988888888877888888899999999999999999994
No 8
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.92 E-value=11 Score=25.91 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=24.9
Q ss_pred HHHHHhhHHhHHHHHHhhhhhhhcccccccccchHHHHhhc
Q 017582 228 IQKLQSDLSNVKEELNSMKHKNMLMESDKTCRNSLLEYLRF 268 (369)
Q Consensus 228 I~~Lqsel~sl~keL~~~k~~~~~l~~~~~~~N~LL~YlrS 268 (369)
|++++.++..|+.|+...+.|.+ ..-.+|..|...
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS------~aa~~l~~y~e~ 36 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVS------KAAADLMAYCEA 36 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHH------HHHHHHHHHHHh
Confidence 56778888888888887765544 245778888754
No 9
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=20.91 E-value=4.1 Score=32.22 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCceeEEEeccccHHHHHHHHHhHhHh
Q 017582 109 GISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLHSLLVSSIITGYT 158 (369)
Q Consensus 109 ~~Spev~e~i~~~v~~lLG~lp~~~f~v~i~tsre~L~~LlassmMtGYf 158 (369)
...|+-++.|.+.+-..|...-++.|+..+...|+++-.+++.+|-.+||
T Consensus 97 ~v~~~~f~~~~~~ll~~l~~~lg~~fT~e~~~AW~k~~~~v~~~l~~~Y~ 146 (146)
T d1outb_ 97 FVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146 (146)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57888788888777777777666788888899999999999999999997
No 10
>d1spga_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Fish (Leiostomus xanthurus) [TaxId: 59837]}
Probab=16.27 E-value=11 Score=29.03 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCceeEEEeccccHHHHHHHHHhHhH
Q 017582 109 GISESAKDSMKQTISSMLGLLPSDQFSITVRLSKQPLHSLLVSSIITGY 157 (369)
Q Consensus 109 ~~Spev~e~i~~~v~~lLG~lp~~~f~v~i~tsre~L~~LlassmMtGY 157 (369)
...|+-++.|.+.+-..|...-++.|+..+...|+++-..++.+|-.||
T Consensus 94 ~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~i~~~l~~~y 142 (143)
T d1spga_ 94 RVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKFLACLALALSEKY 142 (143)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCchhHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788999999999999998888889999899999999999999998888
Done!