BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017583
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HYN|A Chain A, Crystal Structure Of A Putative Signal Transduction
           Protein (Eubrec_0645) From Eubacterium Rectale Atcc
           33656 At 1.20 A Resolution
          Length = 189

 Score = 31.2 bits (69), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMAT 173
           EP +E N  +N +   VY N      G D S    +A D +Y V      E +++ R+ T
Sbjct: 16  EPFSESNLGANSTHDFVYYNXLRXWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHT 75


>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module
 pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module
 pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module Complexed With Mannuronan Trisaccharide
 pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module Complexed With Mannuronan Trisaccharide
          Length = 377

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 78  IDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQ-NLPV 136
           +D F+A Y++      +  ++A+   G   +       +T    Y NGSS +V Q  L  
Sbjct: 172 LDGFVADYLVDSVFENNV-AYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLED 230

Query: 137 HSVGNDISVNVGNAMDNSY-GVASSMALENSMQERMATGNGSNLTR 181
            ++ ++I ++ G   DN+  GV   M  + ++Q     GNGS+  R
Sbjct: 231 LALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVR 276


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,031,165
Number of Sequences: 62578
Number of extensions: 459504
Number of successful extensions: 649
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 21
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)