Query 017583
Match_columns 369
No_of_seqs 202 out of 677
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 1.1E-12 2.4E-17 96.3 5.2 53 315-367 6-60 (60)
2 smart00353 HLH helix loop heli 99.3 3.2E-12 7E-17 92.5 6.7 50 318-368 1-53 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 8E-12 1.7E-16 92.0 5.6 48 316-363 4-55 (55)
4 KOG1318 Helix loop helix trans 99.1 6E-11 1.3E-15 119.9 4.3 56 312-367 232-290 (411)
5 KOG1319 bHLHZip transcription 98.7 1.1E-08 2.4E-13 95.3 3.1 53 316-368 65-123 (229)
6 KOG4304 Transcriptional repres 98.4 1.1E-07 2.4E-12 90.9 3.1 50 317-366 36-92 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.2 1.5E-06 3.1E-11 94.5 5.4 52 314-365 21-75 (803)
8 KOG2588 Predicted DNA-binding 98.0 2.7E-06 5.8E-11 93.4 3.6 58 311-368 274-331 (953)
9 KOG2483 Upstream transcription 97.7 7.6E-05 1.6E-09 71.3 6.7 54 315-368 61-116 (232)
10 KOG3960 Myogenic helix-loop-he 97.4 0.00038 8.2E-09 67.8 6.6 51 318-368 123-174 (284)
11 KOG0561 bHLH transcription fac 97.2 0.00025 5.3E-09 70.6 3.1 50 318-368 65-116 (373)
12 KOG4029 Transcription factor H 97.2 0.00041 8.9E-09 64.7 4.1 51 317-367 113-166 (228)
13 PLN03217 transcription factor 97.1 0.00098 2.1E-08 55.8 5.0 47 322-369 16-68 (93)
14 KOG3910 Helix loop helix trans 93.8 0.046 1E-06 57.9 3.1 52 317-368 530-584 (632)
15 KOG3558 Hypoxia-inducible fact 91.5 0.14 3.1E-06 56.0 3.1 43 319-361 52-97 (768)
16 KOG4447 Transcription factor T 90.2 0.15 3.2E-06 47.1 1.5 47 317-364 82-130 (173)
17 KOG3560 Aryl-hydrocarbon recep 88.8 0.39 8.4E-06 51.8 3.5 40 321-361 33-76 (712)
18 KOG4395 Transcription factor A 67.3 6.7 0.00014 39.1 3.9 48 318-365 179-228 (285)
19 KOG3898 Transcription factor N 56.3 7.4 0.00016 37.8 2.0 45 319-364 78-125 (254)
20 PRK13702 replication protein; 46.7 43 0.00093 28.3 4.8 44 314-357 21-76 (85)
21 TIGR00986 3a0801s05tom22 mitoc 34.9 23 0.0005 32.5 1.6 37 326-363 49-85 (145)
22 PF04281 Tom22: Mitochondrial 27.9 35 0.00075 30.9 1.5 38 324-362 49-86 (137)
23 KOG4571 Activating transcripti 24.5 69 0.0015 32.4 3.0 22 346-367 268-289 (294)
24 KOG4447 Transcription factor T 21.1 72 0.0016 30.0 2.2 24 320-343 29-52 (173)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.35 E-value=1.1e-12 Score=96.28 Aligned_cols=53 Identities=36% Similarity=0.602 Sum_probs=48.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583 315 HPRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 315 ~pHs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk 367 (369)
..|+..||+||++||+.|.+|+.+||.. .+++||++||+.||+||+.|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999998 2449999999999999999999864
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=3.2e-12 Score=92.48 Aligned_cols=50 Identities=40% Similarity=0.610 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 318 SIAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 318 s~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
+..||+||++||+.|..|+.+||. ..| ++|++||++||+||+.|+.++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~~ 53 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQK 53 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhC
Confidence 367999999999999999999996 445 89999999999999999999864
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.26 E-value=8e-12 Score=91.95 Aligned_cols=48 Identities=33% Similarity=0.562 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCC----CCCCChHHHHHHHHHHHHHHH
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ 363 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~----~Kq~DKASILdeAIeYIK~LQ 363 (369)
.|+..||+||++||+.|.+|+.+||.+ ..+++|++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 388999999999999999999999997 235999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.09 E-value=6e-11 Score=119.90 Aligned_cols=56 Identities=25% Similarity=0.504 Sum_probs=49.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCC---CCChHHHHHHHHHHHHHHHHHHh
Q 017583 312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 312 ~at~pHs~aERrRReRINeri~aLr~LVP~~~K---q~DKASILdeAIeYIK~LQ~QVk 367 (369)
++++.|+++|||||++||+||++|..|||.|.- +++|..||..+++||+.||+.-+
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 344569999999999999999999999999842 37899999999999999998554
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.67 E-value=1.1e-08 Score=95.27 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=47.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCCC------CCChHHHHHHHHHHHHHHHHHHhh
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~~K------q~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
.|..+||+||+.|+..+..|++|||.|.. ++.||.||.++|+||.+|+.++.+
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k 123 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK 123 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999997664 378999999999999999987653
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.44 E-value=1.1e-07 Score=90.94 Aligned_cols=50 Identities=34% Similarity=0.653 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCC-------CCChHHHHHHHHHHHHHHHHHH
Q 017583 317 RSIAERVRRTRISERMRKLQDLFPNMDK-------QTNTAEMLDLAVEHIKDLQKQV 366 (369)
Q Consensus 317 Hs~aERrRReRINeri~aLr~LVP~~~K-------q~DKASILdeAIeYIK~LQ~QV 366 (369)
|-+.|||||.|||+-|.+|++|||.+.| +++||.||+.||+|+|.||.+.
T Consensus 36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999995443 3899999999999999999754
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.20 E-value=1.5e-06 Score=94.55 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhcCCCC---CCCChHHHHHHHHHHHHHHHHH
Q 017583 314 THPRSIAERVRRTRISERMRKLQDLFPNMD---KQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 314 t~pHs~aERrRReRINeri~aLr~LVP~~~---Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
..+|+.+|||||+++|.-|.+|.+|||.+. .|+||-+||.+||++||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 456899999999999999999999999988 5699999999999999999874
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.05 E-value=2.7e-06 Score=93.35 Aligned_cols=58 Identities=28% Similarity=0.447 Sum_probs=52.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 311 GCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 311 g~at~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
+.++.+|+++|||-|.-||+||.+|+++||+..-++.|..+|..||+||++|+...++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~ 331 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQK 331 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccc
Confidence 3557789999999999999999999999999876699999999999999999986544
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.71 E-value=7.6e-05 Score=71.30 Aligned_cols=54 Identities=28% Similarity=0.484 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCCCCCCC--ChHHHHHHHHHHHHHHHHHHhh
Q 017583 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQT--NTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 315 ~pHs~aERrRReRINeri~aLr~LVP~~~Kq~--DKASILdeAIeYIK~LQ~QVk~ 368 (369)
..|+.-||+||..|.+.+..|+++||.....+ +.++||+.|++||+.|+.+..+
T Consensus 61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 34788999999999999999999999755422 2699999999999999987653
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.37 E-value=0.00038 Score=67.76 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHhh-hcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 318 SIAERVRRTRISERMRKLQD-LFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 318 s~aERrRReRINeri~aLr~-LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
.+-||||=.|+||.|.+|+. -+++....+-|+.||..||+||..||.=+++
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~ 174 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQE 174 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999965 5778777799999999999999999985544
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.18 E-value=0.00025 Score=70.64 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCC--CCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 318 SIAERVRRTRISERMRKLQDLFPN--MDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 318 s~aERrRReRINeri~aLr~LVP~--~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
+..||||=.-||..|..||.|+|. +.| +.||.||+.+.+||..|..+..+
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhcccc
Confidence 456999999999999999999995 445 99999999999999999876544
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.16 E-value=0.00041 Score=64.73 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCC--C-CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583 317 RSIAERVRRTRISERMRKLQDLFPN--M-DKQTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 317 Hs~aERrRReRINeri~aLr~LVP~--~-~Kq~DKASILdeAIeYIK~LQ~QVk 367 (369)
++..||.|=+-+|..+..||.+||. . +|++.|..+|..||.||++|++-++
T Consensus 113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~ 166 (228)
T KOG4029|consen 113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA 166 (228)
T ss_pred hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence 4666999999999999999999994 3 6679999999999999999998554
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.06 E-value=0.00098 Score=55.81 Aligned_cols=47 Identities=30% Similarity=0.535 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCC------CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 322 RVRRTRISERMRKLQDLFPNM------DKQTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 322 RrRReRINeri~aLr~LVP~~------~Kq~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
|---+.|+|-+.+||+|+|.. +| ...+-||+||+.||+.|+.+|..|
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k-~saskvLqEtC~YIrsLhrEvDdL 68 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYIRNLHREVDDL 68 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999953 34 688899999999999999999764
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.80 E-value=0.046 Score=57.87 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcC---CCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 317 RSIAERVRRTRISERMRKLQDLFP---NMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 317 Hs~aERrRReRINeri~aLr~LVP---~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
.+.-||.|=.-|||.||+|.+++= +.+|.-.|--||..||.-|-.|++||++
T Consensus 530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999999875 4555457999999999999999999986
No 15
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.46 E-value=0.14 Score=55.96 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHH
Q 017583 319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKD 361 (369)
Q Consensus 319 ~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~ 361 (369)
-|.|-||.|=|+-|.+|..++|- +.-++|||+|+..||-|+|-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 36899999999999999999993 33369999999999999974
No 16
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=90.21 E-value=0.15 Score=47.07 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCC--CCCCCChHHHHHHHHHHHHHHHH
Q 017583 317 RSIAERVRRTRISERMRKLQDLFPN--MDKQTNTAEMLDLAVEHIKDLQK 364 (369)
Q Consensus 317 Hs~aERrRReRINeri~aLr~LVP~--~~Kq~DKASILdeAIeYIK~LQ~ 364 (369)
|++-||+|-..+|+.|.+||.+||. .+| +.|---|..|-.||-+|-.
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence 6888999999999999999999994 667 8888999999999998843
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=88.76 E-value=0.39 Score=51.77 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhhcC----CCCCCCChHHHHHHHHHHHHH
Q 017583 321 ERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKD 361 (369)
Q Consensus 321 ERrRReRINeri~aLr~LVP----~~~Kq~DKASILdeAIeYIK~ 361 (369)
-+|-|+|+|..+..|..|+| .+.| +||-+||..+|-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 57789999999999999999 4556 9999999999999873
No 18
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=67.30 E-value=6.7 Score=39.05 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHH
Q 017583 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 318 s~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
+.-||+|=..+|.-|..||..||.. ++++.|=.-|..|-.||-.|-..
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~ 228 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCL 228 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHh
Confidence 4559999999999999999999954 45688999999999999877543
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=56.34 E-value=7.4 Score=37.81 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHHHHH
Q 017583 319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQK 364 (369)
Q Consensus 319 ~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~LQ~ 364 (369)
.-||.|=-.+|+-+..||++||. ..| +.|...|.-|-.||..|+.
T Consensus 78 aRER~RMH~LNdAld~LReviP~~~~~~k-lskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 78 ARERTRMHDLNDALDALREVIPHGLHPPK-LSKIETLRLAANYIAALSE 125 (254)
T ss_pred chhhccccchhHHHHHhHhhccCcCCCCC-CCcchhHHhhhcchhhhcc
Confidence 34888888899999999999993 334 8999999999999998874
No 20
>PRK13702 replication protein; Provisional
Probab=46.68 E-value=43 Score=28.34 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHH--HHHHHHHHHhhhcCCCCC----------CCChHHHHHHHHH
Q 017583 314 THPRSIAERVRRT--RISERMRKLQDLFPNMDK----------QTNTAEMLDLAVE 357 (369)
Q Consensus 314 t~pHs~aERrRRe--RINeri~aLr~LVP~~~K----------q~DKASILdeAIe 357 (369)
-.|.+.+||+|.- |..+.-++|+-.||+.-| .+..|.||+..|+
T Consensus 21 G~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 21 GNPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3788999999875 667778899999997555 2566777776665
No 21
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=34.95 E-value=23 Score=32.46 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHH
Q 017583 326 TRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQ 363 (369)
Q Consensus 326 eRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ 363 (369)
+-|-|||.+|+++||...+ .--.++..-++.++|.+=
T Consensus 49 ETl~ERi~ALkDm~Pp~~R-~~i~~~~s~t~s~~ks~~ 85 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTR-GWIYHKYSTTTNFVKSTL 85 (145)
T ss_pred CcHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4588899999999998877 466677777788877653
No 22
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=27.90 E-value=35 Score=30.85 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH
Q 017583 324 RRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDL 362 (369)
Q Consensus 324 RReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~L 362 (369)
.-+-|-|||-+|+++||.... .--..++..+..++|.+
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R-~~i~~~~~~~~~~~k~~ 86 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVR-NWISSTVSTTSSAVKSL 86 (137)
T ss_pred ccccHHHHHHHHhccCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 345688899999999998776 35556666666666654
No 23
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.46 E-value=69 Score=32.45 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHh
Q 017583 346 TNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 346 ~DKASILdeAIeYIK~LQ~QVk 367 (369)
.+.|+=|+.=|.|+|.|-..+.
T Consensus 268 K~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 268 KDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999987764
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=21.10 E-value=72 Score=29.96 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCC
Q 017583 320 AERVRRTRISERMRKLQDLFPNMD 343 (369)
Q Consensus 320 aERrRReRINeri~aLr~LVP~~~ 343 (369)
.||.|..++++...-|+.|+|++.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 488999999999999999999754
Done!