Query 017583
Match_columns 369
No_of_seqs 202 out of 677
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.6 1.9E-16 6.4E-21 134.0 6.7 70 300-369 14-86 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 3.5E-16 1.2E-20 124.5 3.2 56 314-369 7-62 (82)
3 4h10_B Circadian locomoter out 99.5 5.1E-15 1.8E-19 116.3 4.7 54 315-368 10-63 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 2.1E-15 7.2E-20 115.3 2.4 54 314-367 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 5.8E-15 2E-19 112.0 3.3 55 313-367 5-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 5.3E-15 1.8E-19 116.4 1.0 51 313-364 9-63 (73)
7 1hlo_A Protein (transcription 99.4 4.7E-13 1.6E-17 105.4 5.5 53 316-369 15-69 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 5E-13 1.7E-17 105.6 5.6 53 316-369 5-59 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.3 8.2E-13 2.8E-17 106.6 5.6 53 316-368 9-63 (88)
10 3u5v_A Protein MAX, transcript 99.3 9.1E-13 3.1E-17 104.3 5.7 55 315-369 7-64 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 3.5E-11 1.2E-15 95.8 6.1 53 316-369 4-59 (80)
12 4f3l_A Mclock, circadian locom 99.0 2.6E-10 9.1E-15 108.3 6.5 52 314-365 13-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.0 1.6E-10 5.5E-15 89.8 3.0 52 316-367 15-67 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 4.3E-10 1.5E-14 108.3 3.3 51 313-364 13-67 (387)
15 2ql2_B Neurod1, neurogenic dif 98.9 3.3E-09 1.1E-13 80.5 6.4 51 317-367 6-58 (60)
16 4ath_A MITF, microphthalmia-as 98.6 6.3E-08 2.2E-12 78.4 5.3 44 325-368 4-50 (83)
17 2lfh_A DNA-binding protein inh 98.4 1.1E-07 3.8E-12 74.5 3.7 47 318-364 19-67 (68)
18 4aya_A DNA-binding protein inh 97.9 2.3E-05 7.9E-10 65.0 7.0 48 321-368 33-82 (97)
19 1p3q_Q VPS9P, vacuolar protein 57.6 13 0.00046 27.7 4.3 26 319-344 3-28 (54)
20 3muj_A Transcription factor CO 38.4 42 0.0014 29.4 5.0 36 327-362 95-133 (138)
21 2jqq_A Conserved oligomeric go 30.4 49 0.0017 30.6 4.3 44 323-368 51-94 (204)
22 1f1f_A Cytochrome C6; heme, pr 30.0 1.1E+02 0.0036 21.9 5.4 40 325-365 48-87 (89)
23 2y78_A Peptidyl-prolyl CIS-tra 26.9 19 0.00065 29.8 0.9 14 37-50 10-23 (133)
24 1m2x_A Class B carbapenemase B 24.3 35 0.0012 28.9 2.2 32 336-368 190-221 (223)
25 1a7t_A Metallo-beta-lactamase; 23.3 52 0.0018 28.1 3.1 32 336-368 200-231 (232)
26 3ph2_B Cytochrome C6; photosyn 23.0 1.7E+02 0.0059 20.5 5.4 39 326-365 46-84 (86)
27 1gdv_A Cytochrome C6; RED ALGA 22.7 1.8E+02 0.006 20.4 5.4 39 326-365 45-83 (85)
28 1cyi_A Cytochrome C6, cytochro 20.0 2.1E+02 0.0071 20.5 5.4 40 325-365 46-85 (90)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=1.9e-16 Score=133.96 Aligned_cols=70 Identities=24% Similarity=0.398 Sum_probs=48.3
Q ss_pred CCCCccccccCCCCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCC---CCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 300 GSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 300 dsvp~K~RakRg~at~pHs~aERrRReRINeri~aLr~LVP~~~K---q~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
..++.+..+|+++++.+|+++||+||++||++|.+|++|||++.+ +++|++||++||+||++||.+++.|
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l 86 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 86 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888889999999999999999999999999998853 4799999999999999999998764
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=3.5e-16 Score=124.46 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=51.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 314 THPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 314 t~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
..+|+.+||+||++||++|.+|+.|||+++.++||++||++||+||++||.+++.|
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999998555999999999999999999999865
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=5.1e-15 Score=116.34 Aligned_cols=54 Identities=13% Similarity=0.350 Sum_probs=49.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 315 ~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
.+|+++||+||++||++|.+|+.|||....++||++||++||+||+.||.++.=
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~ 63 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAW 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence 458999999999999999999999998664499999999999999999998753
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=2.1e-15 Score=115.35 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=48.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhcCCCCC------CCChHHHHHHHHHHHHHHHHHHh
Q 017583 314 THPRSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 314 t~pHs~aERrRReRINeri~aLr~LVP~~~K------q~DKASILdeAIeYIK~LQ~QVk 367 (369)
..+|.++||+||++||+.|.+|+.|||.+.+ +++||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3569999999999999999999999997633 36799999999999999999875
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=5.8e-15 Score=111.97 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=49.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhcCCCCC-----CCChHHHHHHHHHHHHHHHHHHh
Q 017583 313 ATHPRSIAERVRRTRISERMRKLQDLFPNMDK-----QTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 313 at~pHs~aERrRReRINeri~aLr~LVP~~~K-----q~DKASILdeAIeYIK~LQ~QVk 367 (369)
....|+.+||+||++||+.|.+|+.|||.+.. +++|++||++||+||+.||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999998872 38999999999999999998764
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=5.3e-15 Score=116.45 Aligned_cols=51 Identities=29% Similarity=0.479 Sum_probs=46.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhcCCC----CCCCChHHHHHHHHHHHHHHHH
Q 017583 313 ATHPRSIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQK 364 (369)
Q Consensus 313 at~pHs~aERrRReRINeri~aLr~LVP~~----~Kq~DKASILdeAIeYIK~LQ~ 364 (369)
++..|+.+||+||++||+.|.+|+.|||.| .| +|||+||+.||+|||.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~K-ldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSC-CCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHcccccccccc-ccHHHHHHHHHHHHHHHhc
Confidence 345699999999999999999999999987 45 9999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=4.7e-13 Score=105.45 Aligned_cols=53 Identities=28% Similarity=0.485 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
.|+..||+||.+||+.|.+|+.|||.+ .| ++|++||..||+||+.|+.++++|
T Consensus 15 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999986 46 999999999999999999998765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.36 E-value=5e-13 Score=105.62 Aligned_cols=53 Identities=28% Similarity=0.485 Sum_probs=48.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
.|+..||+||++||+.|.+|+.+||.+ .| ++|++||.+||+||+.|+.++++|
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l 59 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999985 56 899999999999999999887653
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.34 E-value=8.2e-13 Score=106.64 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~~--Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
.|+..||+||++||+.|.+|+++||.+. ++++|++||.+||+||+.|+.+.+.
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999863 2389999999999999999998764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.34 E-value=9.1e-13 Score=104.32 Aligned_cols=55 Identities=31% Similarity=0.370 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 315 HPRSIAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 315 ~pHs~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
..|+..||+||+.||+.|.+|+.+||. .+|..+|+.||..||+||+.||++++++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999995 4553479999999999999999999975
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.16 E-value=3.5e-11 Score=95.79 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=47.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCC---CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNM---DKQTNTAEMLDLAVEHIKDLQKQVKVT 369 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~---~Kq~DKASILdeAIeYIK~LQ~QVk~L 369 (369)
.|+..||+||..|++.|.+|+++||.+ .| ++|++||.+||+||+.|+.+.+.|
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l 59 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999965 45 899999999999999999987653
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.01 E-value=2.6e-10 Score=108.30 Aligned_cols=52 Identities=13% Similarity=0.394 Sum_probs=42.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017583 314 THPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 314 t~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
..+|+.+||+||+|||+.|.+|+.|||....++||++||..||+|||.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3458999999999999999999999995444499999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.98 E-value=1.6e-10 Score=89.81 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCC-CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583 316 PRSIAERVRRTRISERMRKLQDLFPNM-DKQTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 316 pHs~aERrRReRINeri~aLr~LVP~~-~Kq~DKASILdeAIeYIK~LQ~QVk 367 (369)
.|+.-||+|+..||+.|..|+++||.. +++++|+.||..||+||+.|+..++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 378899999999999999999999964 3459999999999999999998764
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=4.3e-10 Score=108.34 Aligned_cols=51 Identities=29% Similarity=0.458 Sum_probs=46.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhcC----CCCCCCChHHHHHHHHHHHHHHHH
Q 017583 313 ATHPRSIAERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKDLQK 364 (369)
Q Consensus 313 at~pHs~aERrRReRINeri~aLr~LVP----~~~Kq~DKASILdeAIeYIK~LQ~ 364 (369)
++.+|+.+||+||+|||+.|.+|+.||| ...| +||++||..||.|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhc
Confidence 3456999999999999999999999999 4556 9999999999999999974
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.87 E-value=3.3e-09 Score=80.50 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583 317 RSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367 (369)
Q Consensus 317 Hs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk 367 (369)
++.-||+|+..||+.|..||.+||.. +++++|..+|..||+||+.|++.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999964 4569999999999999999999775
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.56 E-value=6.3e-08 Score=78.38 Aligned_cols=44 Identities=27% Similarity=0.521 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhcCCCCC---CCChHHHHHHHHHHHHHHHHHHhh
Q 017583 325 RTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 325 ReRINeri~aLr~LVP~~~K---q~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
|..||++|++|..|||.+.. +.+|++||..||+||+.||.+++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r 50 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR 50 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999997532 379999999999999999986653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=74.47 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHH
Q 017583 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQK 364 (369)
Q Consensus 318 s~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~ 364 (369)
+.-||+|...||+.|..||++||.. +++++|..+|..||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4459999999999999999999965 4469999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.90 E-value=2.3e-05 Score=65.03 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 321 ERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 321 ERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
||.|=..||+-|..||.+||.. +|++.|..+|..||+||+.|+.-+.+
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5777788999999999999964 55699999999999999999987653
No 19
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=57.60 E-value=13 Score=27.67 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCC
Q 017583 319 IAERVRRTRISERMRKLQDLFPNMDK 344 (369)
Q Consensus 319 ~aERrRReRINeri~aLr~LVP~~~K 344 (369)
.++|-+|..-++-+++|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888999999999999999999877
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=38.38 E-value=42 Score=29.37 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhcCCC---CCCCChHHHHHHHHHHHHHH
Q 017583 327 RISERMRKLQDLFPNM---DKQTNTAEMLDLAVEHIKDL 362 (369)
Q Consensus 327 RINeri~aLr~LVP~~---~Kq~DKASILdeAIeYIK~L 362 (369)
.|.-.+..|+++||.- ..++-|..||..|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4889999999999942 22489999999999999876
No 21
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=30.44 E-value=49 Score=30.59 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 323 VRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 323 rRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
+=|.-|+.=+..|+.|+-.-- .++-.++.+||+|+|.|-.=+..
T Consensus 51 ~v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~ 94 (204)
T 2jqq_A 51 KTQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGS 94 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888876543 37889999999999999765443
No 22
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=29.98 E-value=1.1e+02 Score=21.90 Aligned_cols=40 Identities=5% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017583 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 325 ReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
++.|.+.|..-...+|...+.++...| .+.|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQI-EDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHHH-HHHHHHHHHHhhc
Confidence 445666666656778877654666664 6789999998764
No 23
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=26.94 E-value=19 Score=29.76 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=10.5
Q ss_pred CCCcccccccCchh
Q 017583 37 SDSSLTRYRSAPSS 50 (369)
Q Consensus 37 ~nSGL~RyrSAPSS 50 (369)
.+|||.+++.+|-.
T Consensus 10 ~~~~~~~~~~~~~~ 23 (133)
T 2y78_A 10 HSSGLVPRGSHMTV 23 (133)
T ss_dssp --CCSGGGTTTTCC
T ss_pred ccccceecccCCCc
Confidence 68999999999843
No 24
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=24.33 E-value=35 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.1
Q ss_pred hhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 336 QDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 336 r~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
..++|+=.... ....|+.+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 35677655434 467899999999999999874
No 25
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=23.28 E-value=52 Score=28.10 Aligned_cols=32 Identities=6% Similarity=0.184 Sum_probs=23.8
Q ss_pred hhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583 336 QDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368 (369)
Q Consensus 336 r~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~ 368 (369)
..++|+=....+ ..+++.+++||+.|++++++
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhcC
Confidence 457776555344 57889999999999998864
No 26
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=22.97 E-value=1.7e+02 Score=20.50 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017583 326 TRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 326 eRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
+.|-+.|+.-+..+|...+.++...| .+.+.||+.|..+
T Consensus 46 ~~~~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 46 VAITTVVTNGKAGMPAFKGRLTDDQI-AAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccCCCHHHH-HHHHHHHHHhhhc
Confidence 44555566556688887554776665 6789999998754
No 27
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.67 E-value=1.8e+02 Score=20.39 Aligned_cols=39 Identities=8% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017583 326 TRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 326 eRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
+.|.+.|+.-+..+|.....++...| .+.+.||+.|...
T Consensus 45 ~~l~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~~ 83 (85)
T 1gdv_A 45 DAITYQVQNGKNAMPAFGGRLVDEDI-EDAANYVLSQSEK 83 (85)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCCCCCCHHHH-HHHHHHHHHHhhc
Confidence 34445555444678876644666665 6799999998753
No 28
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=20.00 E-value=2.1e+02 Score=20.45 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017583 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (369)
Q Consensus 325 ReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~Q 365 (369)
++.|-+.|+.-...+|.....++... +.+.|.||+.|..+
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 85 (90)
T 1cyi_A 46 VESIIYQVENGKGAMPAWADRLSEEE-IQAVAEYVFKQATD 85 (90)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCHHH-HHHHHHHHHhcccc
Confidence 34455556555667887665466666 56799999998864
Done!