Query 017586
Match_columns 369
No_of_seqs 469 out of 3503
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15094 magnesium/cobalt effl 99.9 3.5E-26 7.5E-31 205.3 13.6 196 139-346 64-273 (292)
2 PRK11573 hypothetical protein; 99.9 9.6E-26 2.1E-30 211.8 14.2 204 138-351 183-401 (413)
3 TIGR03520 GldE gliding motilit 99.9 2.8E-25 6E-30 208.8 14.1 195 138-346 187-399 (408)
4 COG1253 TlyC Hemolysins and re 99.9 2.1E-23 4.5E-28 198.0 15.6 202 138-351 202-419 (429)
5 COG4535 CorC Putative Mg2+ and 99.9 1.7E-23 3.8E-28 172.5 9.0 204 139-354 64-282 (293)
6 COG4536 CorB Putative Mg2+ and 99.9 4.4E-22 9.5E-27 175.3 8.4 203 139-351 197-413 (423)
7 COG2524 Predicted transcriptio 99.8 1.6E-19 3.4E-24 151.3 12.3 123 140-267 170-292 (294)
8 COG2524 Predicted transcriptio 99.8 3E-18 6.6E-23 143.6 11.5 122 37-199 168-290 (294)
9 PRK14869 putative manganese-de 99.7 9.8E-17 2.1E-21 157.9 14.8 217 40-265 67-303 (546)
10 COG3620 Predicted transcriptio 99.7 1.1E-16 2.3E-21 124.4 10.6 120 142-266 65-184 (187)
11 KOG1764 5'-AMP-activated prote 99.7 8.7E-16 1.9E-20 142.2 18.2 237 2-269 95-362 (381)
12 COG3620 Predicted transcriptio 99.7 2E-16 4.4E-21 122.9 11.2 122 39-201 63-184 (187)
13 COG3448 CBS-domain-containing 99.7 2.4E-16 5.2E-21 134.7 12.6 132 136-269 239-375 (382)
14 TIGR01303 IMP_DH_rel_1 IMP deh 99.7 3.9E-16 8.4E-21 148.4 14.6 153 99-265 50-202 (475)
15 COG3448 CBS-domain-containing 99.7 3.2E-16 7E-21 133.9 11.8 130 37-200 241-372 (382)
16 PRK07807 inosine 5-monophospha 99.7 6.6E-16 1.4E-20 147.0 14.8 149 103-265 55-204 (479)
17 cd04630 CBS_pair_17 The CBS do 99.7 1.4E-15 3.1E-20 118.0 13.4 110 153-263 2-113 (114)
18 cd04619 CBS_pair_6 The CBS dom 99.7 1.6E-15 3.4E-20 117.8 13.5 109 154-263 3-113 (114)
19 cd04603 CBS_pair_KefB_assoc Th 99.7 2.1E-15 4.6E-20 116.5 12.9 108 153-263 2-110 (111)
20 cd04641 CBS_pair_28 The CBS do 99.6 3.7E-15 8E-20 116.8 13.5 110 153-263 2-119 (120)
21 cd04618 CBS_pair_5 The CBS dom 99.6 4E-15 8.6E-20 112.2 12.0 93 153-263 2-97 (98)
22 PRK10892 D-arabinose 5-phospha 99.6 3.3E-15 7.1E-20 137.8 13.1 123 140-264 200-323 (326)
23 cd04593 CBS_pair_EriC_assoc_ba 99.6 7.2E-15 1.6E-19 114.2 12.8 110 153-263 2-114 (115)
24 cd04617 CBS_pair_4 The CBS dom 99.6 7.5E-15 1.6E-19 114.7 12.7 110 153-263 2-117 (118)
25 cd04623 CBS_pair_10 The CBS do 99.6 1.1E-14 2.3E-19 112.6 13.1 110 153-263 2-112 (113)
26 cd04587 CBS_pair_CAP-ED_DUF294 99.6 1.1E-14 2.4E-19 112.6 13.2 111 153-263 2-112 (113)
27 cd04608 CBS_pair_PALP_assoc Th 99.6 2.7E-15 5.8E-20 118.4 9.8 112 152-264 2-123 (124)
28 COG4109 Predicted transcriptio 99.6 4E-15 8.7E-20 130.3 11.3 118 143-267 189-307 (432)
29 cd04600 CBS_pair_HPP_assoc Thi 99.6 1.2E-14 2.6E-19 114.4 12.7 111 152-263 2-123 (124)
30 cd04620 CBS_pair_7 The CBS dom 99.6 1.6E-14 3.4E-19 112.2 13.1 110 153-263 2-114 (115)
31 PRK15094 magnesium/cobalt effl 99.6 2.6E-14 5.6E-19 128.6 15.9 172 20-235 48-227 (292)
32 cd04607 CBS_pair_NTP_transfera 99.6 2.4E-14 5.2E-19 110.8 13.5 109 153-263 3-112 (113)
33 PRK11543 gutQ D-arabinose 5-ph 99.6 1.1E-14 2.3E-19 134.2 13.1 122 141-264 196-318 (321)
34 cd04622 CBS_pair_9 The CBS dom 99.6 3.4E-14 7.5E-19 109.8 14.0 111 153-263 2-112 (113)
35 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 3.7E-14 8E-19 109.2 14.1 109 153-263 2-110 (111)
36 COG2905 Predicted signal-trans 99.6 3.2E-14 7E-19 132.3 16.0 119 142-264 149-268 (610)
37 cd04615 CBS_pair_2 The CBS dom 99.6 2.5E-14 5.4E-19 110.7 12.6 109 154-263 3-112 (113)
38 cd04642 CBS_pair_29 The CBS do 99.6 2.4E-14 5.3E-19 113.2 12.6 110 153-263 2-125 (126)
39 cd04639 CBS_pair_26 The CBS do 99.6 2.8E-14 6.1E-19 110.0 12.5 108 153-263 2-110 (111)
40 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 2.3E-14 5E-19 110.9 12.1 110 153-263 2-113 (114)
41 cd04588 CBS_pair_CAP-ED_DUF294 99.6 5.4E-14 1.2E-18 108.2 14.0 108 153-263 2-109 (110)
42 cd04631 CBS_pair_18 The CBS do 99.6 2.6E-14 5.6E-19 112.7 12.4 110 153-263 2-124 (125)
43 TIGR03520 GldE gliding motilit 99.6 5.9E-14 1.3E-18 132.4 16.9 163 30-237 180-350 (408)
44 TIGR01302 IMP_dehydrog inosine 99.6 2.2E-14 4.9E-19 136.9 14.3 116 142-265 80-200 (450)
45 cd04605 CBS_pair_MET2_assoc Th 99.6 4.9E-14 1.1E-18 108.5 13.6 107 152-263 2-109 (110)
46 cd04624 CBS_pair_11 The CBS do 99.6 4.6E-14 1E-18 109.0 13.5 109 153-263 2-111 (112)
47 PTZ00314 inosine-5'-monophosph 99.6 2.3E-14 5E-19 137.5 14.1 150 102-264 60-216 (495)
48 cd04627 CBS_pair_14 The CBS do 99.6 3.8E-14 8.3E-19 111.5 13.0 110 153-262 2-121 (123)
49 cd04625 CBS_pair_12 The CBS do 99.6 5.7E-14 1.2E-18 108.5 13.4 110 153-263 2-111 (112)
50 cd04800 CBS_pair_CAP-ED_DUF294 99.6 6.1E-14 1.3E-18 108.1 13.6 109 153-263 2-110 (111)
51 cd04590 CBS_pair_CorC_HlyC_ass 99.6 5.2E-14 1.1E-18 108.5 12.9 107 153-263 2-110 (111)
52 cd04643 CBS_pair_30 The CBS do 99.6 3.5E-14 7.5E-19 110.4 11.9 108 153-263 2-115 (116)
53 cd04596 CBS_pair_DRTGG_assoc T 99.6 4.4E-14 9.5E-19 108.5 12.2 104 153-263 3-107 (108)
54 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 5.4E-14 1.2E-18 108.9 12.7 110 153-263 3-113 (114)
55 cd04803 CBS_pair_15 The CBS do 99.6 4.4E-14 9.6E-19 110.9 12.3 110 153-263 2-121 (122)
56 cd04589 CBS_pair_CAP-ED_DUF294 99.6 7E-14 1.5E-18 107.8 13.3 109 153-263 2-110 (111)
57 cd04802 CBS_pair_3 The CBS dom 99.6 9.5E-14 2.1E-18 107.2 13.9 110 153-263 2-111 (112)
58 cd04595 CBS_pair_DHH_polyA_Pol 99.6 8.6E-14 1.9E-18 107.1 13.5 108 152-263 2-109 (110)
59 cd04621 CBS_pair_8 The CBS dom 99.6 4.4E-14 9.5E-19 113.2 12.2 109 153-263 2-134 (135)
60 cd04626 CBS_pair_13 The CBS do 99.6 5.2E-14 1.1E-18 108.5 12.2 108 153-263 2-110 (111)
61 cd04801 CBS_pair_M50_like This 99.6 3.9E-14 8.4E-19 109.9 11.3 108 153-263 2-113 (114)
62 cd04614 CBS_pair_1 The CBS dom 99.6 4.2E-14 9.2E-19 106.2 11.1 93 153-263 2-95 (96)
63 cd04640 CBS_pair_27 The CBS do 99.6 5.7E-14 1.2E-18 111.1 12.2 111 153-263 2-125 (126)
64 cd04629 CBS_pair_16 The CBS do 99.6 4.2E-14 9.1E-19 109.5 11.1 110 153-263 2-113 (114)
65 cd04636 CBS_pair_23 The CBS do 99.6 6.5E-14 1.4E-18 111.7 12.3 109 153-263 2-131 (132)
66 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 1.2E-13 2.7E-18 105.9 13.1 105 153-263 3-108 (109)
67 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.1E-13 2.5E-18 105.6 12.8 103 153-263 2-105 (106)
68 PRK07107 inosine 5-monophospha 99.5 9.3E-14 2E-18 133.2 15.0 154 99-264 58-218 (502)
69 TIGR00400 mgtE Mg2+ transporte 99.5 1.7E-14 3.8E-19 138.0 10.0 187 19-264 111-304 (449)
70 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 1.5E-13 3.2E-18 105.9 13.2 109 153-263 2-110 (111)
71 cd04586 CBS_pair_BON_assoc Thi 99.5 5.4E-14 1.2E-18 112.6 10.9 110 152-263 2-134 (135)
72 cd04632 CBS_pair_19 The CBS do 99.5 1E-13 2.2E-18 109.9 12.3 111 153-263 2-127 (128)
73 cd04609 CBS_pair_PALP_assoc2 T 99.5 1.2E-13 2.6E-18 106.1 12.2 108 153-263 2-109 (110)
74 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.9E-13 4.1E-18 107.0 13.4 110 153-263 2-121 (122)
75 cd04635 CBS_pair_22 The CBS do 99.5 9.1E-14 2E-18 109.1 11.3 111 153-263 2-121 (122)
76 cd04633 CBS_pair_20 The CBS do 99.5 1.4E-13 3.1E-18 107.8 11.9 110 153-263 2-120 (121)
77 cd04637 CBS_pair_24 The CBS do 99.5 1.5E-13 3.2E-18 107.9 11.8 110 153-263 2-121 (122)
78 cd04599 CBS_pair_GGDEF_assoc2 99.5 2.7E-13 5.8E-18 103.3 12.8 103 153-263 2-104 (105)
79 cd04610 CBS_pair_ParBc_assoc T 99.5 2.8E-13 6.1E-18 103.6 13.0 105 152-263 2-106 (107)
80 PRK01862 putative voltage-gate 99.5 1.4E-13 3.1E-18 136.2 14.2 126 138-266 443-571 (574)
81 PLN02274 inosine-5'-monophosph 99.5 2.3E-13 4.9E-18 130.7 14.5 111 148-266 106-222 (505)
82 PRK05567 inosine 5'-monophosph 99.5 2.3E-13 5.1E-18 131.3 14.4 115 143-265 88-204 (486)
83 cd04618 CBS_pair_5 The CBS dom 99.5 3.9E-13 8.3E-18 101.3 12.1 91 50-196 2-96 (98)
84 cd04601 CBS_pair_IMPDH This cd 99.5 3.1E-13 6.8E-18 103.8 11.9 106 152-263 2-109 (110)
85 cd04606 CBS_pair_Mg_transporte 99.5 2.5E-13 5.4E-18 104.4 11.1 101 157-264 2-108 (109)
86 cd04602 CBS_pair_IMPDH_2 This 99.5 5.1E-13 1.1E-17 103.6 12.6 105 153-263 3-113 (114)
87 PRK05567 inosine 5'-monophosph 99.5 7.1E-13 1.5E-17 127.9 15.7 172 42-264 88-265 (486)
88 COG0517 FOG: CBS domain [Gener 99.5 1E-12 2.2E-17 102.1 13.7 109 152-262 7-117 (117)
89 cd04603 CBS_pair_KefB_assoc Th 99.5 6.6E-13 1.4E-17 102.5 12.0 106 50-196 2-109 (111)
90 cd02205 CBS_pair The CBS domai 99.5 1.1E-12 2.3E-17 100.8 13.2 110 153-263 2-112 (113)
91 COG2905 Predicted signal-trans 99.5 1.3E-13 2.8E-18 128.3 9.0 94 1-95 175-268 (610)
92 TIGR00400 mgtE Mg2+ transporte 99.5 6.1E-13 1.3E-17 127.4 14.0 121 139-268 128-254 (449)
93 cd04594 CBS_pair_EriC_assoc_ar 99.5 8.9E-13 1.9E-17 100.4 12.3 100 155-263 4-103 (104)
94 PRK10892 D-arabinose 5-phospha 99.5 5.4E-13 1.2E-17 123.1 12.9 119 39-196 200-321 (326)
95 PRK07807 inosine 5-monophospha 99.5 2E-12 4.4E-17 123.3 16.9 189 9-251 45-251 (479)
96 KOG1764 5'-AMP-activated prote 99.5 2.6E-12 5.6E-17 119.2 17.0 201 42-266 67-286 (381)
97 cd04584 CBS_pair_ACT_assoc Thi 99.5 9E-13 2E-17 103.1 11.4 109 153-263 2-120 (121)
98 cd04634 CBS_pair_21 The CBS do 99.5 1.4E-12 3.1E-17 105.5 12.8 109 153-263 2-142 (143)
99 cd04591 CBS_pair_EriC_assoc_eu 99.4 1.5E-12 3.2E-17 99.5 11.7 99 152-263 2-104 (105)
100 cd04630 CBS_pair_17 The CBS do 99.4 6.8E-13 1.5E-17 102.8 9.8 94 1-94 19-113 (114)
101 TIGR00393 kpsF KpsF/GutQ famil 99.4 9.4E-13 2E-17 118.2 11.7 112 142-257 155-268 (268)
102 cd04619 CBS_pair_6 The CBS dom 99.4 7.8E-13 1.7E-17 102.6 9.7 94 1-94 19-113 (114)
103 cd04614 CBS_pair_1 The CBS dom 99.4 2.5E-12 5.4E-17 96.5 11.8 91 50-196 2-94 (96)
104 TIGR01137 cysta_beta cystathio 99.4 2.2E-12 4.9E-17 124.5 14.4 124 136-265 329-453 (454)
105 KOG2550 IMP dehydrogenase/GMP 99.4 2.7E-13 5.9E-18 121.1 7.0 183 98-299 68-264 (503)
106 cd04641 CBS_pair_28 The CBS do 99.4 1.5E-12 3.2E-17 101.9 10.6 116 49-196 1-118 (120)
107 cd04801 CBS_pair_M50_like This 99.4 3.2E-12 7E-17 99.0 12.0 108 50-196 2-112 (114)
108 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1.3E-11 2.8E-16 117.7 17.6 114 39-197 86-200 (475)
109 cd04598 CBS_pair_GGDEF_assoc T 99.4 4.7E-12 1E-16 98.8 12.0 110 153-263 2-118 (119)
110 cd04595 CBS_pair_DHH_polyA_Pol 99.4 1.1E-11 2.5E-16 95.2 13.6 107 49-196 2-108 (110)
111 cd04617 CBS_pair_4 The CBS dom 99.4 5.9E-12 1.3E-16 98.2 11.9 110 50-196 2-116 (118)
112 PRK11543 gutQ D-arabinose 5-ph 99.4 3.3E-12 7.1E-17 117.7 12.1 118 40-197 196-317 (321)
113 cd04599 CBS_pair_GGDEF_assoc2 99.4 9.5E-12 2.1E-16 94.7 12.8 102 50-196 2-103 (105)
114 cd04638 CBS_pair_25 The CBS do 99.4 1E-11 2.2E-16 94.8 12.5 103 153-263 2-105 (106)
115 cd04623 CBS_pair_10 The CBS do 99.4 3.9E-12 8.4E-17 98.1 10.1 94 1-94 19-112 (113)
116 PRK11573 hypothetical protein; 99.4 1.4E-11 3.1E-16 116.2 15.2 132 31-202 177-313 (413)
117 cd04627 CBS_pair_14 The CBS do 99.4 2E-11 4.4E-16 95.9 13.2 116 50-195 2-120 (123)
118 cd04625 CBS_pair_12 The CBS do 99.4 2.3E-11 5E-16 93.7 13.3 109 50-196 2-110 (112)
119 cd04588 CBS_pair_CAP-ED_DUF294 99.3 2.6E-11 5.6E-16 93.1 13.2 107 49-196 1-108 (110)
120 cd04600 CBS_pair_HPP_assoc Thi 99.3 1.8E-11 3.8E-16 96.3 12.4 119 49-196 2-122 (124)
121 cd04800 CBS_pair_CAP-ED_DUF294 99.3 2.4E-11 5.3E-16 93.4 12.7 109 49-196 1-109 (111)
122 cd04639 CBS_pair_26 The CBS do 99.3 1.6E-11 3.5E-16 94.5 11.6 106 50-196 2-109 (111)
123 cd04615 CBS_pair_2 The CBS dom 99.3 3.5E-11 7.5E-16 92.9 13.5 108 50-196 2-111 (113)
124 PRK07107 inosine 5-monophospha 99.3 2.9E-11 6.2E-16 116.2 15.5 115 42-197 95-217 (502)
125 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.2E-11 6.9E-16 91.9 12.9 101 50-196 2-104 (106)
126 cd04629 CBS_pair_16 The CBS do 99.3 2.3E-11 5E-16 94.0 12.1 110 50-196 2-112 (114)
127 cd04596 CBS_pair_DRTGG_assoc T 99.3 2E-11 4.3E-16 93.5 11.6 103 49-196 2-106 (108)
128 cd04802 CBS_pair_3 The CBS dom 99.3 3.8E-11 8.2E-16 92.5 13.2 109 50-196 2-110 (112)
129 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.7E-11 8E-16 92.3 13.1 107 50-196 2-109 (111)
130 COG1253 TlyC Hemolysins and re 99.3 6.5E-11 1.4E-15 112.8 17.4 139 19-201 186-329 (429)
131 cd04621 CBS_pair_8 The CBS dom 99.3 2.9E-11 6.2E-16 96.8 12.7 131 50-196 2-133 (135)
132 cd04593 CBS_pair_EriC_assoc_ba 99.3 3.1E-11 6.8E-16 93.5 12.6 108 50-196 2-113 (115)
133 cd04633 CBS_pair_20 The CBS do 99.3 3.8E-11 8.1E-16 93.9 13.1 118 50-196 2-119 (121)
134 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.8E-11 8.2E-16 92.4 12.8 108 50-196 2-109 (111)
135 cd04626 CBS_pair_13 The CBS do 99.3 3.5E-11 7.7E-16 92.6 12.5 107 50-196 2-109 (111)
136 cd04608 CBS_pair_PALP_assoc Th 99.3 8.8E-12 1.9E-16 98.2 9.2 109 49-196 2-121 (124)
137 cd04594 CBS_pair_EriC_assoc_ar 99.3 5.1E-11 1.1E-15 90.7 13.1 99 52-196 4-102 (104)
138 cd04586 CBS_pair_BON_assoc Thi 99.3 2.3E-11 5E-16 97.3 11.7 132 48-196 1-133 (135)
139 PRK14869 putative manganese-de 99.3 7.7E-12 1.7E-16 123.3 10.7 230 1-263 94-390 (546)
140 cd04605 CBS_pair_MET2_assoc Th 99.3 5.9E-11 1.3E-15 91.1 13.4 105 49-196 2-108 (110)
141 cd04607 CBS_pair_NTP_transfera 99.3 3E-11 6.5E-16 93.3 11.8 107 50-196 3-111 (113)
142 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 4.9E-11 1.1E-15 91.7 12.7 108 49-196 1-109 (111)
143 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 6.8E-11 1.5E-15 90.5 13.3 104 49-196 2-107 (109)
144 PRK01862 putative voltage-gate 99.3 1.9E-11 4.2E-16 121.1 12.7 122 38-198 444-569 (574)
145 cd04585 CBS_pair_ACT_assoc2 Th 99.3 4.9E-11 1.1E-15 93.2 12.4 118 50-196 2-120 (122)
146 cd04637 CBS_pair_24 The CBS do 99.3 1E-10 2.3E-15 91.6 14.2 118 50-196 2-120 (122)
147 cd04631 CBS_pair_18 The CBS do 99.3 5.3E-11 1.1E-15 93.7 12.5 120 49-196 1-123 (125)
148 cd04643 CBS_pair_30 The CBS do 99.3 5.2E-11 1.1E-15 92.3 12.2 111 50-196 2-114 (116)
149 cd04636 CBS_pair_23 The CBS do 99.3 5.3E-11 1.1E-15 94.8 12.5 128 50-196 2-130 (132)
150 COG0517 FOG: CBS domain [Gener 99.3 1E-10 2.3E-15 90.7 13.8 110 45-195 3-116 (117)
151 cd04610 CBS_pair_ParBc_assoc T 99.3 7.1E-11 1.5E-15 90.2 12.5 103 49-196 2-105 (107)
152 cd04642 CBS_pair_29 The CBS do 99.3 4E-11 8.7E-16 94.6 11.4 121 50-196 2-124 (126)
153 PTZ00314 inosine-5'-monophosph 99.3 1.2E-10 2.6E-15 112.1 16.5 114 42-197 97-215 (495)
154 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 4.7E-11 1E-15 92.2 11.3 109 49-196 1-112 (114)
155 cd04620 CBS_pair_7 The CBS dom 99.3 6.4E-11 1.4E-15 91.8 12.1 108 50-196 2-113 (115)
156 cd04622 CBS_pair_9 The CBS dom 99.3 7.4E-11 1.6E-15 91.0 12.4 110 49-196 1-111 (113)
157 cd04590 CBS_pair_CorC_HlyC_ass 99.3 7.2E-11 1.6E-15 90.8 12.3 105 50-196 2-109 (111)
158 COG4109 Predicted transcriptio 99.3 4.5E-11 9.8E-16 105.2 12.3 135 20-199 166-305 (432)
159 cd04640 CBS_pair_27 The CBS do 99.3 5.4E-11 1.2E-15 93.9 11.8 116 50-196 2-124 (126)
160 PLN02274 inosine-5'-monophosph 99.3 2.6E-10 5.7E-15 109.8 18.8 114 44-199 103-221 (505)
161 cd04803 CBS_pair_15 The CBS do 99.3 5.6E-11 1.2E-15 93.1 11.9 117 50-196 2-120 (122)
162 cd04624 CBS_pair_11 The CBS do 99.3 8.6E-11 1.9E-15 90.5 12.4 107 50-196 2-110 (112)
163 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.1E-11 4.5E-16 94.1 8.9 93 1-94 19-112 (113)
164 cd04592 CBS_pair_EriC_assoc_eu 99.3 5.7E-11 1.2E-15 94.6 11.5 98 153-250 2-119 (133)
165 cd04632 CBS_pair_19 The CBS do 99.3 1.2E-10 2.5E-15 92.2 12.9 121 50-196 2-126 (128)
166 cd04634 CBS_pair_21 The CBS do 99.3 1.4E-10 3.1E-15 93.7 13.4 140 49-196 1-141 (143)
167 TIGR01302 IMP_dehydrog inosine 99.3 7.1E-11 1.5E-15 113.0 13.3 114 42-198 81-199 (450)
168 cd04602 CBS_pair_IMPDH_2 This 99.2 1.6E-10 3.4E-15 89.5 12.6 103 50-196 3-112 (114)
169 cd04591 CBS_pair_EriC_assoc_eu 99.2 1.4E-10 3.1E-15 88.4 11.9 97 50-196 3-103 (105)
170 cd04584 CBS_pair_ACT_assoc Thi 99.2 2E-10 4.2E-15 89.8 12.8 117 50-196 2-119 (121)
171 cd04635 CBS_pair_22 The CBS do 99.2 1.3E-10 2.9E-15 90.9 11.7 117 50-196 2-120 (122)
172 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 6.9E-11 1.5E-15 91.3 9.7 92 2-94 21-113 (114)
173 TIGR00393 kpsF KpsF/GutQ famil 99.2 7.4E-11 1.6E-15 105.9 10.6 111 41-191 155-268 (268)
174 cd04601 CBS_pair_IMPDH This cd 99.2 1.8E-10 4E-15 88.3 10.8 104 49-196 2-108 (110)
175 cd04606 CBS_pair_Mg_transporte 99.2 1.6E-10 3.4E-15 88.7 10.3 98 54-196 2-106 (109)
176 cd04638 CBS_pair_25 The CBS do 99.2 5.3E-10 1.1E-14 85.2 12.6 102 50-196 2-104 (106)
177 cd04609 CBS_pair_PALP_assoc2 T 99.2 4.5E-10 9.9E-15 86.0 12.1 106 50-196 2-108 (110)
178 COG4536 CorB Putative Mg2+ and 99.2 4.1E-10 9E-15 100.3 13.2 130 34-203 193-327 (423)
179 PF00571 CBS: CBS domain CBS d 99.2 6.3E-11 1.4E-15 79.5 6.3 56 211-266 1-56 (57)
180 TIGR01137 cysta_beta cystathio 99.2 3.4E-10 7.5E-15 109.3 13.7 119 38-197 332-451 (454)
181 COG2239 MgtE Mg/Co/Ni transpor 99.2 2.5E-10 5.3E-15 107.4 11.9 116 141-265 131-252 (451)
182 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.2E-09 2.7E-14 85.0 13.1 111 50-196 2-117 (119)
183 cd02205 CBS_pair The CBS domai 99.1 1.8E-09 3.9E-14 82.5 12.8 108 50-196 2-111 (113)
184 TIGR01186 proV glycine betaine 99.0 2.6E-08 5.6E-13 92.5 17.1 107 154-267 252-359 (363)
185 cd04592 CBS_pair_EriC_assoc_eu 99.0 8.2E-09 1.8E-13 82.2 10.9 114 50-182 2-116 (133)
186 PF00571 CBS: CBS domain CBS d 99.0 2.5E-09 5.4E-14 71.7 6.7 54 43-96 1-55 (57)
187 COG2239 MgtE Mg/Co/Ni transpor 98.9 4.7E-09 1E-13 98.8 10.5 122 30-196 121-249 (451)
188 PRK10070 glycine betaine trans 98.9 7.7E-08 1.7E-12 90.4 17.6 104 157-267 290-394 (400)
189 KOG0474 Cl- channel CLC-7 and 98.8 1.2E-08 2.6E-13 96.4 7.1 125 138-265 578-746 (762)
190 COG4535 CorC Putative Mg2+ and 98.8 1.4E-08 3E-13 84.9 6.1 126 34-201 60-190 (293)
191 PRK10070 glycine betaine trans 98.6 2.9E-06 6.3E-11 79.9 16.6 150 6-201 232-394 (400)
192 TIGR01186 proV glycine betaine 98.6 3.4E-06 7.3E-11 78.5 16.2 148 6-199 197-357 (363)
193 KOG0474 Cl- channel CLC-7 and 98.5 3.1E-07 6.7E-12 87.1 6.7 152 38-196 579-743 (762)
194 COG4175 ProV ABC-type proline/ 98.3 5.5E-06 1.2E-10 73.2 11.1 165 48-266 215-383 (386)
195 cd04597 CBS_pair_DRTGG_assoc2 98.3 1E-06 2.2E-11 68.0 5.8 55 209-263 58-112 (113)
196 KOG2550 IMP dehydrogenase/GMP 98.1 2.6E-05 5.6E-10 70.8 11.2 104 49-196 116-224 (503)
197 cd04597 CBS_pair_DRTGG_assoc2 98.1 4.8E-06 1E-10 64.2 5.5 53 41-93 58-111 (113)
198 smart00116 CBS Domain in cysta 98.1 1.4E-05 3.1E-10 50.5 6.1 47 218-264 1-47 (49)
199 KOG0475 Cl- channel CLC-3 and 97.9 0.00012 2.6E-09 70.2 11.7 110 154-264 558-693 (696)
200 KOG0475 Cl- channel CLC-3 and 97.7 0.00016 3.5E-09 69.3 8.8 130 51-196 558-691 (696)
201 TIGR03415 ABC_choXWV_ATP choli 97.7 0.00061 1.3E-08 63.9 12.7 106 143-266 275-380 (382)
202 smart00116 CBS Domain in cysta 97.5 0.0004 8.7E-09 43.5 5.9 43 154-196 2-45 (49)
203 TIGR03415 ABC_choXWV_ATP choli 97.4 0.0028 6E-08 59.5 12.3 139 6-198 232-378 (382)
204 KOG0476 Cl- channel CLC-2 and 97.2 0.0041 8.9E-08 61.2 11.2 60 40-99 587-649 (931)
205 KOG2118 Predicted membrane pro 97.2 0.0011 2.5E-08 64.0 7.2 133 138-274 200-336 (498)
206 PF03471 CorC_HlyC: Transporte 96.5 0.0013 2.8E-08 47.2 1.3 56 287-350 18-76 (81)
207 COG1125 OpuBA ABC-type proline 96.2 0.035 7.5E-07 48.3 8.7 98 161-263 194-307 (309)
208 COG4175 ProV ABC-type proline/ 96.0 0.037 8.1E-07 49.6 8.1 136 9-200 235-382 (386)
209 cd06409 PB1_MUG70 The MUG70 pr 95.4 0.019 4E-07 41.2 3.2 32 335-366 1-33 (86)
210 COG1125 OpuBA ABC-type proline 94.5 0.44 9.5E-06 41.7 9.7 116 50-196 188-306 (309)
211 KOG0476 Cl- channel CLC-2 and 90.4 0.37 7.9E-06 48.1 4.4 66 208-273 587-654 (931)
212 KOG2118 Predicted membrane pro 83.2 0.98 2.1E-05 44.1 2.9 127 34-200 197-328 (498)
213 COG1419 FlhF Flagellar GTP-bin 72.6 10 0.00022 35.8 6.0 140 16-182 233-373 (407)
214 PRK11388 DNA-binding transcrip 63.1 24 0.00052 35.9 7.2 92 163-258 61-163 (638)
215 PF05198 IF3_N: Translation in 54.5 28 0.0006 24.4 4.2 34 5-38 11-44 (76)
216 PF05198 IF3_N: Translation in 54.4 24 0.00052 24.7 3.8 25 240-264 12-36 (76)
217 PRK11388 DNA-binding transcrip 53.7 24 0.00051 36.0 5.3 80 7-89 73-163 (638)
218 CHL00199 infC translation init 41.9 36 0.00078 28.3 3.6 34 5-38 23-56 (182)
219 PF14827 Cache_3: Sensory doma 39.1 32 0.00069 26.1 2.8 17 242-258 93-109 (116)
220 PF14044 NETI: NETI protein 36.2 46 0.001 21.7 2.7 24 220-245 2-25 (57)
221 TIGR00168 infC translation ini 36.1 44 0.00096 27.4 3.3 34 5-38 6-39 (165)
222 COG2216 KdpB High-affinity K+ 32.5 84 0.0018 30.8 4.9 40 59-98 414-453 (681)
223 COG2216 KdpB High-affinity K+ 31.1 80 0.0017 31.0 4.5 38 161-198 413-450 (681)
224 cd02958 UAS UAS family; UAS is 30.0 1.7E+02 0.0038 21.7 5.7 95 161-265 4-107 (114)
225 PRK10026 arsenate reductase; P 29.3 2.9E+02 0.0063 21.9 7.9 94 154-255 6-107 (141)
226 KOG1503 Phosphoribosylpyrophos 26.2 2.2E+02 0.0047 24.8 5.9 126 231-365 116-262 (354)
227 COG1956 GAF domain-containing 25.7 71 0.0015 26.0 2.7 18 74-91 118-135 (163)
228 PF03948 Ribosomal_L9_C: Ribos 24.0 60 0.0013 23.4 1.9 26 14-39 24-50 (87)
229 PF13365 Trypsin_2: Trypsin-li 23.5 54 0.0012 24.3 1.8 19 237-255 102-120 (120)
230 PRK00028 infC translation init 23.5 94 0.002 25.8 3.2 34 5-38 18-51 (177)
231 smart00594 UAS UAS domain. 21.5 1.4E+02 0.0031 22.7 3.8 81 160-250 13-97 (122)
232 PRK00028 infC translation init 20.3 86 0.0019 26.1 2.4 26 240-265 19-44 (177)
233 PF02743 Cache_1: Cache domain 20.1 1.1E+02 0.0024 21.1 2.6 17 8-24 18-34 (81)
No 1
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.94 E-value=3.5e-26 Score=205.28 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=163.7
Q ss_pred hcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017586 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
+...+++++|+|+.++.+++++.++.++++.+.+.+++++||++ + ++++|+++.+|++ ........ ...+.++|.
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~r 140 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVLR 140 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHcC
Confidence 66778999999988999999999999999999999999999998 4 7899999999997 44332211 235788885
Q ss_pred cCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCCCchH------------HHHHHH
Q 017586 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAGSNNE------------AASTMM 284 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~~~~~------------~~~~~~ 284 (369)
+++++++++++.++++.|++++.+.+||+|++|.++|+||++||+++++|++.++.+...+ +.+.+.
T Consensus 141 -~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 219 (292)
T PRK15094 141 -QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS 219 (292)
T ss_pred -CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence 6679999999999999999999999999999999999999999999999999887653221 111122
Q ss_pred HHHHHHhhcCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCceeEEeeCCCCce
Q 017586 285 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 346 (369)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~~~~g~~ 346 (369)
-...++.+.+..++++|+|++|++...++++|+.|+.+.+.++. |+|.+++|+-
T Consensus 220 l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~--------f~V~~~~~~r 273 (292)
T PRK15094 220 IEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ--------FKVAMADSRR 273 (292)
T ss_pred HHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence 23345556666666689999999999999999999999999988 9999997654
No 2
>PRK11573 hypothetical protein; Provisional
Probab=99.93 E-value=9.6e-26 Score=211.83 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=166.8
Q ss_pred HhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017586 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m 215 (369)
.+...+++++|+||.++.+++.++++.++++.+.+++++++||++ .++++|+++.+|++ .....+.......+.+++
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~~~~~l~~~~ 261 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKENMLRAA 261 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcCCHHHHHhhc
Confidence 356788999999999999999999999999999999999999998 48999999999998 433222211112344566
Q ss_pred ccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCCCch-H-----------HHHHH
Q 017586 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAGSNN-E-----------AASTM 283 (369)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~~~~-~-----------~~~~~ 283 (369)
+++.+||+++++.++++.|++++.+.+.|+||+|.+.|+||.+||+++++|++.++.+... . ..+.+
T Consensus 262 -r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~ 340 (413)
T PRK11573 262 -DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTA 340 (413)
T ss_pred -cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeee
Confidence 5899999999999999999999999999999999999999999999999999988765321 1 11122
Q ss_pred HHHHHHHhhcCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCceeEEeeCCCC-ceeEEec
Q 017586 284 MQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC 351 (369)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~~~~g-~~~~~~~ 351 (369)
.-+..+..+.+..++++|+|++|++...++++|+.|+.+.+.++. |+|.+++| ++.|.++
T Consensus 341 ~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~--------f~V~~~~~~rI~~v~v 401 (413)
T PRK11573 341 NVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD--------IDILDVQDNMIKQVKV 401 (413)
T ss_pred EHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEecCCeEEEEEE
Confidence 334446666666666689999999999999999999999999999 99999965 4544444
No 3
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.93 E-value=2.8e-25 Score=208.82 Aligned_cols=195 Identities=13% Similarity=0.138 Sum_probs=161.5
Q ss_pred HhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017586 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m 215 (369)
.+...+++++|+|+.++++++.++++.++++.+.+++++++||++ .++++|+++.+|++ ..... ...++.++|
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~ 261 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLL 261 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHc
Confidence 356778999999999999999999999999999999999999998 36899999999998 43322 134577888
Q ss_pred ccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCCCchH-----------HHHHHH
Q 017586 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAGSNNE-----------AASTMM 284 (369)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~~~~~-----------~~~~~~ 284 (369)
. ++.++++++++.++++.|++++.+.++|+||+|.++|+||.+||+++++|++.++.+...+ ..+.+.
T Consensus 262 ~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~ 340 (408)
T TIGR03520 262 R-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTS 340 (408)
T ss_pred C-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccC
Confidence 4 7899999999999999999999999999999999999999999999999999876553221 111222
Q ss_pred HHHHHHhhcCCCC-----CCCcccccccccccccCCCCcccccCCCCCCCCCCCceeEEeeCCCCce
Q 017586 285 QKFWDSAMALSPN-----DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 346 (369)
Q Consensus 285 ~~~~~~~~~~~~~-----~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~~~~g~~ 346 (369)
-+..++.+.+..+ +++++|++|++...++++|+.|+.+.+.++. |+|.+++|+=
T Consensus 341 l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~~--------f~V~~~~~~r 399 (408)
T TIGR03520 341 LKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFE--------FTIEAMDKKR 399 (408)
T ss_pred HHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence 2333555555522 3468999999999999999999999999999 9999997654
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=197.99 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=165.4
Q ss_pred HhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017586 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m 215 (369)
.+..++++++|+||.++.+++.+.++.++.+.+.+.+++++||++ .++++|+++.+|++........ .......+
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~ 278 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV 278 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc
Confidence 456788999999999999999999999999999999999999999 5889999999999854443321 01122222
Q ss_pred ccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCCCchH------------HHHHH
Q 017586 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAGSNNE------------AASTM 283 (369)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~~~~~------------~~~~~ 283 (369)
+++++||+++++.++++.|++++.+.+.|+||+|.+.|+||.+||+++++|++.++.+...+ +.+.+
T Consensus 279 -~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~ 357 (429)
T COG1253 279 -RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV 357 (429)
T ss_pred -cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence 38999999999999999999999999999999999999999999999999999988765221 11222
Q ss_pred HHHHHHHhhcCCC-CCCCcccccccccccccCCCCcccccCCCCCCCCCCCceeEEeeCCC-CceeEEec
Q 017586 284 MQKFWDSAMALSP-NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC 351 (369)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~~~~-g~~~~~~~ 351 (369)
.-+..++.+++.. .+.+|+|++|++....+++|..|+.+.++++. |+|.+++ .++.|..+
T Consensus 358 ~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~rI~~v~i 419 (429)
T COG1253 358 PLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGRRIDKVLI 419 (429)
T ss_pred cHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCCcEEEEEE
Confidence 3334466666653 34468999999999999999999999999999 9999996 45555544
No 5
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.7e-23 Score=172.49 Aligned_cols=204 Identities=14% Similarity=0.160 Sum_probs=172.5
Q ss_pred hcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017586 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
.....++++|.||+...++..+.++.+++..+.+..++++||+. .+++.||+..+||+ +++..... ...+.++.
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL- 139 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL- 139 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-
Confidence 34567999999999999999999999999999999999999997 57899999999998 66654433 34677776
Q ss_pred cCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCCCchHHH-HHH-----------H
Q 017586 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAGSNNEAA-STM-----------M 284 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~~~~~~~-~~~-----------~ 284 (369)
+|.++||++..+...++-|+.++.+++.|+||+|.+.|+||.+||++.++|.|.++.+..++.- ..+ .
T Consensus 140 RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~ 219 (293)
T COG4535 140 RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTE 219 (293)
T ss_pred ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEeccc
Confidence 6999999999999999999999999999999999999999999999999999999887664321 111 1
Q ss_pred HHHHHHhhcCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCceeEEeeCC-CCceeEEecCCC
Q 017586 285 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN-KGLMHRFTCGML 354 (369)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~~~-~g~~~~~~~g~~ 354 (369)
-+.++..++-...+++++|.+|+++.-.|+.|..|+.+...++. |+|... .+++|-..+.+.
T Consensus 220 IedFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~--------FkV~~ADsRrv~~l~vt~~ 282 (293)
T COG4535 220 IEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ--------FKVARADSRRVIQLHVTVP 282 (293)
T ss_pred HHHHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE--------EEEeecccceEEEEEEecC
Confidence 23346667777778889999999999999999999999999888 999887 477876655543
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.4e-22 Score=175.29 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=169.1
Q ss_pred hcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017586 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
+.+.+|+|+|.||+++..++.+++.+++.+.+....+.++|++. -++++|+++.+|++ +++.+........+..+.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a- 274 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA- 274 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-
Confidence 45678999999999999999999999999999999999999998 36799999999998 665554432223333333
Q ss_pred cCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCCCchHHHH-----------HHHH
Q 017586 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAGSNNEAAS-----------TMMQ 285 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~~~~~~~~-----------~~~~ 285 (369)
.+|++||+++++.+-+..|++++-+...||||+|.+.|+||.+||+++++|.+.++++...+... .+.-
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~i 354 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANV 354 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcH
Confidence 58999999999999999999999999999999999999999999999999999877666544222 2233
Q ss_pred HHHHHhhcCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCceeEEeeCCC-CceeEEec
Q 017586 286 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC 351 (369)
Q Consensus 286 ~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~~~~-g~~~~~~~ 351 (369)
...++.+.+..|+++..|.+|++.+.++++|+.|..+.+.++. |.|.+.+ .++.+-++
T Consensus 355 RdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~~~~~i~~~~--------~~Il~~~~N~I~~vri 413 (423)
T COG4536 355 RDLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRIGGYR--------IDILKVQENRIKQVKI 413 (423)
T ss_pred HHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCCeEEEEcCEE--------EEEEehhhcceeeEEE
Confidence 4568999999999999999999999999999999999988888 8988874 44544443
No 7
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.82 E-value=1.6e-19 Score=151.29 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=112.8
Q ss_pred cCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCc
Q 017586 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
.+.+++++|+ ++++++.+++|+.++...|.+++++..||+|+++++|++|..|+. .+++++. ....++++|.+++
T Consensus 170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~--~~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGN--LDAKVSDYMRKNV 244 (294)
T ss_pred Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCC--ccccHHHHhccCC
Confidence 4567889998 789999999999999999999999999999988999999999997 6666553 2678999999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHH
Q 017586 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~ 267 (369)
+++.+++.+.||+++|..+++.++.|+|.+|+++|+||++||++.+.+
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987653
No 8
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.77 E-value=3e-18 Score=143.64 Aligned_cols=122 Identities=22% Similarity=0.352 Sum_probs=109.6
Q ss_pred CCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 017586 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 37 ~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
.+.+.++.++|+++++++++++|+.+|.++|.++++++.||+|+++++|+++..|+..+....
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g----------------- 230 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG----------------- 230 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC-----------------
Confidence 667889999999999999999999999999999999999999988999999999988763321
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHH
Q 017586 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (369)
-...+|+++|. ++++++..++.+.+|+++|..+++.++.|+| +|+++|++|+.|+
T Consensus 231 ----------------------~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDI 286 (294)
T COG2524 231 ----------------------NLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDI 286 (294)
T ss_pred ----------------------CccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHH
Confidence 12345889998 7899999999999999999999999999999 9999999999999
Q ss_pred HHHH
Q 017586 196 LMRV 199 (369)
Q Consensus 196 l~~~ 199 (369)
+.++
T Consensus 287 L~~i 290 (294)
T COG2524 287 LTRI 290 (294)
T ss_pred HHHh
Confidence 8544
No 9
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.71 E-value=9.8e-17 Score=157.88 Aligned_cols=217 Identities=20% Similarity=0.240 Sum_probs=150.6
Q ss_pred ccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 017586 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 40 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
..+++++|.++++++++++++.+|+++|.+++++.+||+| +|+++|+++..|+.+......... ........+..+.
T Consensus 67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence 3689999999999999999999999999999999999998 699999999999988766543210 0111112222222
Q ss_pred HhcCCCCCChhhHHHHHHHH-----hcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCC---------
Q 017586 119 KHWGTSISGPNTFIETLRER-----MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------- 184 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~-----~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~--------- 184 (369)
+.+++.+............. +....+.+.|.+ .+++++..+..+.. .+.+.+.++++|+.+.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~~~---~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDIQL---AAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHHHH---HHHHcCCCEEEECCCCCCCHHHHHH
Confidence 22222222111000000000 000112223443 34666665555433 4578899999888622
Q ss_pred ----EEEEEeehHHHHHHHHhcCCCccccccccccc-cCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehh
Q 017586 185 ----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 259 (369)
Q Consensus 185 ----~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~ 259 (369)
.+.++.|..|.+. ....-. ...+++++|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||..
T Consensus 221 a~~~~i~ii~t~~dt~~-t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 221 AKENGVTVISTPYDTFT-TARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY 297 (546)
T ss_pred HHhCCCeEEEecccHHH-HHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence 4788999999873 332211 2578999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 017586 260 HITHAA 265 (369)
Q Consensus 260 Di~~~~ 265 (369)
|+++..
T Consensus 298 dl~~~~ 303 (546)
T PRK14869 298 HLLSPV 303 (546)
T ss_pred Hhhccc
Confidence 999743
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.70 E-value=1.1e-16 Score=124.44 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=106.1
Q ss_pred CCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCcee
Q 017586 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~ 221 (369)
.+++.+|+ .+++.|.|++++.+++++|.+++++.+||+++++++|-||.+++.+..+....+.....+.++|..++++
T Consensus 65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~ 142 (187)
T COG3620 65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT 142 (187)
T ss_pred EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence 45688998 7899999999999999999999999999999999999999999986666554555678899999999999
Q ss_pred ecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHH
Q 017586 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~ 266 (369)
|++++++..+.+++..++. +.|+ ++|+++||||+.||++.+.
T Consensus 143 Vs~~~~l~vI~~LL~~~~A--VlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 143 VSPDESLNVISQLLEEHPA--VLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCCCCCHHHHHHHHhhCCe--EEEE-eCCceEEEEeHHHHHHHHh
Confidence 9999999999999988764 6777 5899999999999998543
No 11
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.70 E-value=8.7e-16 Score=142.21 Aligned_cols=237 Identities=20% Similarity=0.212 Sum_probs=171.6
Q ss_pred ccCCcCEEEEEcCC-CcEEEEEehhHHHHHHHhccCC------CCc---------cccccc----cccCCeEEeCCCcHH
Q 017586 2 AARRVDALLLTDSN-ALLCGILTDKDIATRVIARELN------LEE---------TPVSKV----MTRNPTFVLSDTLAV 61 (369)
Q Consensus 2 ~~~~~~~~~V~d~~-~~~~Givt~~di~~~~~~~~~~------~~~---------~~v~di----m~~~~i~v~~~~~l~ 61 (369)
..+.+++.|++|.. ...+|++|..|+...+...... ... ..+..+ -.++.+.+.+..++.
T Consensus 95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l 174 (381)
T KOG1764|consen 95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL 174 (381)
T ss_pred HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence 35677889999854 4689999999998555432211 101 111111 112338999999999
Q ss_pred HHHHHHHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHh
Q 017586 62 EALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM 139 (369)
Q Consensus 62 ea~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 139 (369)
++...+.+++++++||.| .+++..+++.+.+++.......... ...+
T Consensus 175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-------------------------------~~~~ 223 (381)
T KOG1764|consen 175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-------------------------------LPSL 223 (381)
T ss_pred HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-------------------------------cHHH
Confidence 999999999999999998 4899999999999887443211100 0011
Q ss_pred cCCCccccccCC-CceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccc-ccccc-
Q 017586 140 FRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEKVM- 215 (369)
Q Consensus 140 ~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~-v~~~m- 215 (369)
...++.+.-... .++..+..++++.+|++.|...+++.+||++ .|+.+|+++..|+............... +....
T Consensus 224 l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~ 303 (381)
T KOG1764|consen 224 LSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALS 303 (381)
T ss_pred hhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhh
Confidence 122222222111 3488899999999999999999999999999 7777999999999733333333322222 22222
Q ss_pred -----ccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHh
Q 017586 216 -----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV 269 (369)
Q Consensus 216 -----~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~ 269 (369)
..+++++.++.++.+++..|..+++|+++|||++|.++|+||..|++.++...-
T Consensus 304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 235799999999999999999999999999999999999999999999887654
No 12
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.70 E-value=2e-16 Score=122.93 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=103.8
Q ss_pred CccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 017586 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 39 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
...++..+|+++++.+.+++++.+++++|.+++++.+||+++++++|-++-.++.+..+..+
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~------------------ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM------------------ 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc------------------
Confidence 46789999999999999999999999999999999999999999999999999988755432
Q ss_pred HhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHH
Q 017586 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~ 198 (369)
+.....+++++|. ..+++++++.++...-.++.. +.++.|+++|+++||||..|++ +
T Consensus 125 ------------------e~i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e~G~~vGIITk~DI~-k 181 (187)
T COG3620 125 ------------------ESIRSLRVREVMG--EPFPTVSPDESLNVISQLLEE--HPAVLVVENGKVVGIITKADIM-K 181 (187)
T ss_pred ------------------cchhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhh--CCeEEEEeCCceEEEEeHHHHH-H
Confidence 1133455888998 678999999999888777654 4678888999999999999998 5
Q ss_pred HHh
Q 017586 199 VIS 201 (369)
Q Consensus 199 ~~~ 201 (369)
++.
T Consensus 182 ~~~ 184 (187)
T COG3620 182 LLA 184 (187)
T ss_pred HHh
Confidence 543
No 13
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.70 E-value=2.4e-16 Score=134.71 Aligned_cols=132 Identities=26% Similarity=0.305 Sum_probs=114.2
Q ss_pred HHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHH----hcCCCccccc
Q 017586 136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI----SQNLPADSTL 210 (369)
Q Consensus 136 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~----~~~~~~~~~~ 210 (369)
...+...+..+||+ +++++++.++++.+|.++|.+++++.+||+| +.+++|++|.+|++..+. +.-.......
T Consensus 239 ~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~ 316 (382)
T COG3448 239 RRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT 316 (382)
T ss_pred HHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence 44566777899999 7999999999999999999999999999999 789999999999984211 1111123567
Q ss_pred cccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHh
Q 017586 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV 269 (369)
Q Consensus 211 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~ 269 (369)
++.+|+.++.++.++++..+++..+.+.+.+++||+|+.|+++||||..|++.++..+.
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776543
No 14
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.69 E-value=3.9e-16 Score=148.43 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=133.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEE
Q 017586 99 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 178 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~ 178 (369)
.|+++++..+++..+..| |..+.|.+...+...+.....++.++|. ++++++.+++++.++++.|.+++++.+
T Consensus 50 ~mdtvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~ 122 (475)
T TIGR01303 50 NMTAVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAA 122 (475)
T ss_pred cchhhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEE
Confidence 467788888888888777 8888888766666677677777889988 678999999999999999999999999
Q ss_pred EEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEeh
Q 017586 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (369)
Q Consensus 179 ~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~ 258 (369)
||+++++++|++|.+|+. . ... ..++.++|++++.++++++++.+|+++|.+++.+++||+|++|+++|+||.
T Consensus 123 vVvD~gklvGIVT~rDL~-~-----~~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~ 195 (475)
T TIGR01303 123 VVILEDRPVGLVTDSDLL-G-----VDR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTR 195 (475)
T ss_pred EEEECCEEEEEEEHHHhh-c-----CCC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence 999988999999999984 2 111 357999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHH
Q 017586 259 IHITHAA 265 (369)
Q Consensus 259 ~Di~~~~ 265 (369)
.||++..
T Consensus 196 ~DLl~~~ 202 (475)
T TIGR01303 196 TGALRAT 202 (475)
T ss_pred HHHHHHH
Confidence 9999854
No 15
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=3.2e-16 Score=133.93 Aligned_cols=130 Identities=20% Similarity=0.326 Sum_probs=111.7
Q ss_pred CCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 017586 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (369)
Q Consensus 37 ~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
...++++.|||+++++++.+++++.+|+++|.+|+++.+||+| +.+++|+|+++|+++..-
T Consensus 241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~------------------ 302 (382)
T COG3448 241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR------------------ 302 (382)
T ss_pred HhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC------------------
Confidence 3457899999999999999999999999999999999999998 589999999999986411
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHH
Q 017586 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (369)
Q Consensus 116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d 194 (369)
. .++..++ .+...+++.+|+ +++.++.++++..+++-.+.+.+.+++||+| .|+++||+|..|
T Consensus 303 ----------~---~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtD 366 (382)
T COG3448 303 ----------P---SPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTD 366 (382)
T ss_pred ----------c---chHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHH
Confidence 0 1122222 456778999999 6799999999999999999999999999999 899999999999
Q ss_pred HHHHHH
Q 017586 195 ILMRVI 200 (369)
Q Consensus 195 ll~~~~ 200 (369)
++..+.
T Consensus 367 liaal~ 372 (382)
T COG3448 367 LIAALY 372 (382)
T ss_pred HHHHHH
Confidence 984443
No 16
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.68 E-value=6.6e-16 Score=147.01 Aligned_cols=149 Identities=26% Similarity=0.272 Sum_probs=123.8
Q ss_pred HHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe
Q 017586 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 182 (369)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 182 (369)
+++..+++..+..| |..+.|.+-..+...+.+...++.++|. .++.++++++++.++++.|.+++++.+||++
T Consensus 55 vt~~~MAiaLAr~G-----GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD 127 (479)
T PRK07807 55 VAGRRMAETVARRG-----GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVD 127 (479)
T ss_pred hhHHHHHHHHHHCC-----CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEEC
Confidence 33444444444443 6666766655566666677777889998 6899999999999999999999999999998
Q ss_pred -CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHH
Q 017586 183 -ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261 (369)
Q Consensus 183 -~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di 261 (369)
+++++|+||.+|+. .. .. ..++.++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..||
T Consensus 128 ~~gklvGIVT~rDL~-~~-----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI 200 (479)
T PRK07807 128 EEGRPVGVVTEADCA-GV-----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA 200 (479)
T ss_pred CCCeEEEEEeHHHHh-cC-----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 78999999999994 21 11 357999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 017586 262 THAA 265 (369)
Q Consensus 262 ~~~~ 265 (369)
++..
T Consensus 201 l~~~ 204 (479)
T PRK07807 201 LRAT 204 (479)
T ss_pred HHHh
Confidence 9854
No 17
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.4e-15 Score=117.97 Aligned_cols=110 Identities=28% Similarity=0.343 Sum_probs=96.5
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.++.+++++.++++.|.+.+++.+||++ + ++++|+++.+|+++.+..........++.++|..++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 478899999999999999989999999998 5 89999999999974454433333346788999888999999999999
Q ss_pred HHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999997 99999999999985
No 18
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=1.6e-15 Score=117.81 Aligned_cols=109 Identities=24% Similarity=0.308 Sum_probs=96.3
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhc-CCCccccccccccccCceeecCCCCHHHH
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+.++++++++.++++.|.+.+...+||++ +|+++|+++.+|++ +.... .......++.++|..++.++++++++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence 77899999999999999999999999998 88999999999997 43332 11223567899998899999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++.+++||+|++|+++|+||+.|+++
T Consensus 82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999998899999999999975
No 19
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=2.1e-15 Score=116.51 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=94.6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+.+.+||++ +++++|+++..|+. +.... .....++.++|..++.++++++++.+|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence 377899999999999999988999999998 78999999999996 43211 111356889998889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999985
No 20
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.7e-15 Score=116.81 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=91.4
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCC-ccccccc------cccccCceeecC
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI 224 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~-~~~~~v~------~~m~~~~~~v~~ 224 (369)
++.++++++++.++++.|.+++++.+||++ +|+++|+++.+|++ .+...+.. ....++. ..|..++.++++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 478899999999999999999999999998 88999999999997 44433221 1111222 334456789999
Q ss_pred CCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 225 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
No 21
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=4e-15 Score=112.20 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=84.5
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.++++++++.++++.|.+++++.+||++ + ++++|++|.+|+. +... +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence 478999999999999999999999999998 4 7999999999996 3211 778999999999
Q ss_pred HHHHhHhCCCcEeeEEcCC-CcEEEEEehhHHHH
Q 017586 231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~-g~~~Givt~~Di~~ 263 (369)
|++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999987 99999999999975
No 22
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.63 E-value=3.3e-15 Score=137.83 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=106.4
Q ss_pred cCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccC
Q 017586 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (369)
Q Consensus 140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~ 218 (369)
...+++++|.+.+++.++++++++.++++.|.+.+.+.+||++ +|+++|++|.+|+. +....+......++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 3456899998433799999999999999999988888888888 88999999999996 555443333356899999999
Q ss_pred ceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
+.++.+++++.+|++.|.+++.+++||+| +|+++|+||+.|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 99999999999999999999999999998 6899999999999984
No 23
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.63 E-value=7.2e-15 Score=114.19 Aligned_cols=110 Identities=27% Similarity=0.397 Sum_probs=95.7
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++.+++++.++++.|.+.+.+.+||++ +++++|+++.+|+. ............++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 467889999999999999999999999999 78999999999997 4443332222345888998899999999999999
Q ss_pred HHHhHhCCCcEeeEEcCC--CcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~--g~~~Givt~~Di~~ 263 (369)
++.|.+++...+||+|++ |+++|+||..|+++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999987 89999999999986
No 24
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=7.5e-15 Score=114.71 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=94.4
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CceeecCCCCHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 229 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 229 (369)
++.++++++++.++++.|.+++...+||++ +++++|+++..|+.+... ........++.++|.+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 478899999999999999989999999998 689999999999974443 2222224567889874 688999999999
Q ss_pred HHHHHhHhCCCcEeeEEcCC---CcEEEEEehhHHHH
Q 017586 230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH 263 (369)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~---g~~~Givt~~Di~~ 263 (369)
+++++|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999977 69999999999874
No 25
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=1.1e-14 Score=112.61 Aligned_cols=110 Identities=33% Similarity=0.479 Sum_probs=95.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+++.+||++ +++++|+++.+|+++.+..........++.++|..++.++++++++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 467889999999999999999999999998 6899999999999744433222222457889998889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999997 99999999999975
No 26
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.62 E-value=1.1e-14 Score=112.59 Aligned_cols=111 Identities=58% Similarity=0.840 Sum_probs=96.5
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++.+++++.++++.|.+.+.+.+||+++++++|+++.+|++......+......++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 47789999999999999998898999999889999999999997445443322212578899988899999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++.+++||++++|+++|+||..|++.
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999999998899999999999975
No 27
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.62 E-value=2.7e-15 Score=118.39 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=95.7
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
+++.+++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++..+... ....+.++.++|.+++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG-KVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh-ccCCCCcHHHHhhccceecCCCCCHHH
Confidence 3588899999999999999999999999998 68999999999998444433 222367999999999999999999999
Q ss_pred HHHHhH---------hCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 231 a~~~~~---------~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
+.+++. ..+.+.+||+|++|+++|+||..|++++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 999653 3357788999988999999999999974
No 28
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.61 E-value=4e-15 Score=130.29 Aligned_cols=118 Identities=24% Similarity=0.257 Sum_probs=109.3
Q ss_pred CccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCcee
Q 017586 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (369)
Q Consensus 143 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~ 221 (369)
.|.++|+|..+..++.+++++.+..++..+.+++++||+| ..+++|++|.+|+. +.. ++.++..+|+++|.+
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~-~~t~ieKVMtknp~t 261 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKK-PSTTIEKVMTKNPIT 261 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCC-CCccHHHHhccCCee
Confidence 4789999988899999999999999999999999999999 88999999999997 222 368999999999999
Q ss_pred ecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHH
Q 017586 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~ 267 (369)
+.+.+++..+.+.|.-.++..+||+|++.+++|+||+.|+++++--
T Consensus 262 v~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 262 VRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred ecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997643
No 29
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=1.2e-14 Score=114.43 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=96.7
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCC----------ccccccccccccCce
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE 220 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~ 220 (369)
+++.+++++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ ........ ....++.++|.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 4578899999999999999999999999998 69999999999997 43332211 124478899988999
Q ss_pred eecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999999999999986
No 30
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.6e-14 Score=112.21 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=93.4
Q ss_pred ceeEECCCCcHHHHHHHHHHcC-CcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCC--CCHH
Q 017586 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 229 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~--~~l~ 229 (369)
++.+++++.++.++++.|.+.+ ...+||+++++++|+++..|++ +....+......++.++|..++.+++++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 3667899999999999998888 6677888888999999999997 4444333222357889998888889887 7899
Q ss_pred HHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++.|.+++...+||+|++|+++|+||+.|+++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999986
No 31
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.60 E-value=2.6e-14 Score=128.60 Aligned_cols=172 Identities=13% Similarity=0.149 Sum_probs=124.8
Q ss_pred EEEehhHHHHHHHhccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-C-CeEEEEEehHHHHHH
Q 017586 20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYD 95 (369)
Q Consensus 20 Givt~~di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~ 95 (369)
|.++..+ +.++.+.+.+.+.+|.++|++ ++.++++++++.++++.+.+++++++||++ + ++++|+++.+|++..
T Consensus 48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 4555444 244555668889999999997 689999999999999999999999999997 4 789999999998753
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCC
Q 017586 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~ 175 (369)
.... .....+.++|. +++++++++++.++++.|.+++.
T Consensus 126 ~~~~---------------------------------------~~~~~l~~l~r---~~~~V~e~~~l~~~L~~m~~~~~ 163 (292)
T PRK15094 126 MRSD---------------------------------------AEAFSMDKVLR---QAVVVPESKRVDRMLKEFRSQRY 163 (292)
T ss_pred hhcc---------------------------------------CCcCCHHHHcC---CCcCcCCCCcHHHHHHHHHhcCC
Confidence 1000 00112456665 36689999999999999999999
Q ss_pred cEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc-ccc--ccCceeecCCCCHHHHHHHh
Q 017586 176 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIM 235 (369)
Q Consensus 176 ~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~-~~m--~~~~~~v~~~~~l~~a~~~~ 235 (369)
+.+||+| .|.++|+||..|++..+...-.+..+.... .+- ....+.++..+++.++.+.+
T Consensus 164 ~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 164 HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred EEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHh
Confidence 9999999 688999999999996555432221110100 111 12346666777777666665
No 32
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=2.4e-14 Score=110.82 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=95.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
.+.++++++++.++++.|.+.+...+||++ +++++|+++.+|++ +.+...... ..++.++|..++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 367789999999999999988999999998 78999999999997 443333222 457889998889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++.+++||+|++|+++|+||..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999998899999999999873
No 33
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.60 E-value=1.1e-14 Score=134.22 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=106.0
Q ss_pred CCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCc
Q 017586 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
..+|+++|.+..++.++++++++.++++.|.+.+...+||++ +|+++|+++..|+. +.+..+... ..++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence 356899998422389999999999999999988889999999 78999999999996 444333222 457899999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
.++++++++.+|++.|.+++...+||+|++|+++|+||+.|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999974
No 34
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=3.4e-14 Score=109.84 Aligned_cols=111 Identities=32% Similarity=0.478 Sum_probs=96.8
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++++.|.+.+++.+||+++++++|+++..|++.+....+......++.++|...+.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 47789999999999999999999999999989999999999986444444333323358899988999999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|...+.+++||+|++|+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999998899999999999975
No 35
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.60 E-value=3.7e-14 Score=109.23 Aligned_cols=109 Identities=31% Similarity=0.481 Sum_probs=96.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.+++++.++.++++.|.+.++..+||+++++++|+++.+|++ +....... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 46789999999999999998889999999989999999999997 44433332 25678999988899999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 36
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.60 E-value=3.2e-14 Score=132.27 Aligned_cols=119 Identities=27% Similarity=0.365 Sum_probs=109.2
Q ss_pred CCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCce
Q 017586 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~ 220 (369)
.++.++++ .++++|++.+++.+|+..|.+.|.+.+.+++ ++...||+|.+|+..+.+.++.+. +.+|+++|+.|++
T Consensus 149 trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~ 225 (610)
T COG2905 149 TRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVI 225 (610)
T ss_pred HHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCce
Confidence 34677777 6799999999999999999999999888888 899999999999998888877665 7899999999999
Q ss_pred eecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
++..++.+.+|+-.|.+++++++||++ +|+++|+||..||++.
T Consensus 226 svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l 268 (610)
T COG2905 226 SVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL 268 (610)
T ss_pred eecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence 999999999999999999999999987 7999999999999975
No 37
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=2.5e-14 Score=110.69 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=95.1
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
+..+.+++++.++++.|.+.+.+.+||++ +++++|+++.+|+++..... ......++.++|..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67889999999999999999999999998 78999999999997433332 22224578899988999999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++...+||+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998899999999999974
No 38
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2.4e-14 Score=113.17 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=92.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccc-------------ccccccccC
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADST-------------LVEKVMTPN 218 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~-------------~v~~~m~~~ 218 (369)
++.++++++++.++++.|.+++++.+||++ +++++|+++..|++ ............ .....|..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 477899999999999999999999999998 78999999999997 443322211111 122456678
Q ss_pred ceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.++++++++.+|++.|.+++.+++||+|++|+++|+||..||++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999985
No 39
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2.8e-14 Score=110.02 Aligned_cols=108 Identities=25% Similarity=0.368 Sum_probs=95.1
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++.+++++.++++.|.+.+.+.+||++ +++++|+++..|++ +.+..... ..++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence 467789999999999999888899999999 68999999999997 44433222 357889998899999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++.+++||+|++|+++|++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 40
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.59 E-value=2.3e-14 Score=110.92 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=96.7
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++++++++.++++.|.+.+++.+||++ +++++|+++..|+. ++..........++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 477899999999999999999999999999 68999999999997 5544433222367889999999999999999999
Q ss_pred HHHhHhCCCcEeeEEcC-CCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~-~g~~~Givt~~Di~~ 263 (369)
++.|...+.+.+||+|+ +|+++|++|..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999997 799999999999975
No 41
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.58 E-value=5.4e-14 Score=108.23 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=95.4
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++++.|.+.+++.+||+++++++|+++..|++ +....+.. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 47789999999999999999999999999888999999999997 54443322 2578889988899999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 42
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=2.6e-14 Score=112.69 Aligned_cols=110 Identities=32% Similarity=0.388 Sum_probs=95.4
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHHHHHHhcCCCc-----------cccccccccccCc
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 219 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll~~~~~~~~~~-----------~~~~v~~~m~~~~ 219 (369)
++.++.++.++.++++.|.+.+.+.+||++ + ++++|+++..|++ .++...... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467889999999999999999999999998 5 8999999999997 444332211 1346888888889
Q ss_pred eeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999998899999999999986
No 43
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.58 E-value=5.9e-14 Score=132.36 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=124.8
Q ss_pred HHHhccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHH
Q 017586 30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 105 (369)
Q Consensus 30 ~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~ 105 (369)
.++.+..++.+++++|+|++ ++++++.++++.++++.+.+++++++||+++ ++++|+++.+|++.... .
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~-~------ 252 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN-K------ 252 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc-c------
Confidence 44445568889999999996 7899999999999999999999999999974 69999999999875310 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 017586 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~ 184 (369)
...+++++|. ++.++++++++.++++.|.+++.+.++|+| .|
T Consensus 253 ----------------------------------~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G 295 (408)
T TIGR03520 253 ----------------------------------KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG 295 (408)
T ss_pred ----------------------------------CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence 0112455564 488999999999999999999999999999 69
Q ss_pred EEEEEeehHHHHHHHHhcCCCccccccccccc---cCceeecCCCCHHHHHHHhHh
Q 017586 185 KPRGILTSKDILMRVISQNLPADSTLVEKVMT---PNPECATIDTPIVDALHIMHD 237 (369)
Q Consensus 185 ~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~~~~ 237 (369)
..+|+||..|+++.+..+-.+..+ .-.+.+. ...+.++..+++.++.+.|.-
T Consensus 296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence 999999999999666543222111 1122221 345677778888888777733
No 44
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.58 E-value=2.2e-14 Score=136.88 Aligned_cols=116 Identities=29% Similarity=0.355 Sum_probs=103.1
Q ss_pred CCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeehHHHHHHHHhcCCCccccccccccc-
Q 017586 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT- 216 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~- 216 (369)
.+.++.|. +++.+++++.++.++++.|.+++++++||++ + ++++|++|.+|++ ... . ...++.++|+
T Consensus 80 k~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~-~----~~~~V~dvm~~ 151 (450)
T TIGR01302 80 KRAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK-D----KGKPVSEVMTR 151 (450)
T ss_pred ccccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh-c----CCCCHHHhhCC
Confidence 34677777 5799999999999999999999999999999 5 6999999999996 321 1 2467999998
Q ss_pred cCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHH
Q 017586 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~ 265 (369)
.+++++++++++.++++.|.+++.+.+||+|++|+++|+||+.||++..
T Consensus 152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 4899999999999999999999999999999999999999999999865
No 45
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=4.9e-14 Score=108.46 Aligned_cols=107 Identities=33% Similarity=0.402 Sum_probs=94.8
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
+++.+++++.++.++++.|.+.+++.+||++ +|+++|+++.++++ +..... ..++.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~----~~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARD----KKSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhC----ccCHHHhcCCCCeEECCCCcHHH
Confidence 4578899999999999999999999999998 78999999999997 444332 13588889889999999999999
Q ss_pred HHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999999999999975
No 46
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=4.6e-14 Score=108.98 Aligned_cols=109 Identities=30% Similarity=0.502 Sum_probs=95.7
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+++.+||++ +++++|+++..|++ +.+..+.. ...++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCC-CccCHHHhccCCCEEECCCCcHHHH
Confidence 367889999999999999999999999999 68999999999997 44433322 2457889998899999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++...+||+|++|++.|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999985
No 47
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.58 E-value=2.3e-14 Score=137.54 Aligned_cols=150 Identities=27% Similarity=0.319 Sum_probs=118.5
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHh-cCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEE
Q 017586 102 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180 (369)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V 180 (369)
++++..+++..+..| |..+.|.+...+...+.. .-....+.|. .+++++++++++.+++++|.+++++.+||
T Consensus 60 ~vt~~~ma~a~a~~G-----glGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpV 132 (495)
T PTZ00314 60 TVTEHKMAIAMALMG-----GIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILI 132 (495)
T ss_pred ccccHHHHHHHHHCC-----CeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEE
Confidence 344444555555544 777776653333333333 3334666776 57899999999999999999999999999
Q ss_pred EeC----CEEEEEeehHHHHHHHHhcCCCcccccccccccc--CceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEE
Q 017586 181 TVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD 254 (369)
Q Consensus 181 ~~~----~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~G 254 (369)
+++ ++++|++|.+|+. . .. ....++.++|++ ++.++++++++.+|+++|.+++.+.+||+|++|+++|
T Consensus 133 vd~~~~~gkLvGIVt~~DL~-~-~~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG 206 (495)
T PTZ00314 133 TVDGKVGGKLLGIVTSRDID-F-VK----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA 206 (495)
T ss_pred EeCCccCCeEEEEEEHHHHh-h-cc----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 984 7999999999994 2 21 125689999986 7899999999999999999999999999999999999
Q ss_pred EEehhHHHHH
Q 017586 255 VVDVIHITHA 264 (369)
Q Consensus 255 ivt~~Di~~~ 264 (369)
+||+.||++.
T Consensus 207 IIT~~DIl~~ 216 (495)
T PTZ00314 207 LVSRSDLKKN 216 (495)
T ss_pred EEEehHhhhc
Confidence 9999999985
No 48
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.8e-14 Score=111.54 Aligned_cols=110 Identities=20% Similarity=0.292 Sum_probs=90.5
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHHHHHHhcCCCc--------cccccccccccCceee
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA--------DSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll~~~~~~~~~~--------~~~~v~~~m~~~~~~v 222 (369)
++.++++++++.++++.|.+.+++++||++ + ++++|+++..|+++......... ....+.++|..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 467899999999999999988999999999 5 89999999999974332211100 0012234677888999
Q ss_pred cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHH
Q 017586 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~ 262 (369)
++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999999889999999999985
No 49
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=5.7e-14 Score=108.48 Aligned_cols=110 Identities=25% Similarity=0.391 Sum_probs=93.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
.+.++++++++.++++.|.+.+...++|.++++++|+++.+|+++............++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 36789999999999999988888888877789999999999997433322122224578999988889999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++...+||+| +|+++|+||..|+++
T Consensus 82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 999999999999998 599999999999985
No 50
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.58 E-value=6.1e-14 Score=108.11 Aligned_cols=109 Identities=35% Similarity=0.490 Sum_probs=95.3
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.+++++.++.++.+.|.+.+++.+||+++++++|+++..|++..+...+.. ...++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 47789999999999999998889999999989999999999997444433222 24578899988999999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++.+++||+++ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999997 99999999999975
No 51
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.57 E-value=5.2e-14 Score=108.50 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=93.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.+++++.++.++.+.|.+.+.+.+||++ + ++++|+++..|++ +....... ..++..+| .++.++++++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence 478899999999999999998999999998 6 8999999999997 44443322 14566666 57889999999999
Q ss_pred HHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+++.|.+++.+++||+|++|+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999998899999999999985
No 52
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.5e-14 Score=110.37 Aligned_cols=108 Identities=26% Similarity=0.258 Sum_probs=92.3
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCc-c----ccccccccccCceeecCCC
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-D----STLVEKVMTPNPECATIDT 226 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~-~----~~~v~~~m~~~~~~v~~~~ 226 (369)
++.++++++++.++++.|.+.+++.+||++ +++++|+++.+|++ +........ . ..++.++|.+++.++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 477899999999999999999999999999 68999999999997 444322111 1 3578899988899999999
Q ss_pred CHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 227 ~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.++++.|.+.+ .+||+|++|+++|+||..|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998865 4999999999999999999986
No 53
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=4.4e-14 Score=108.46 Aligned_cols=104 Identities=30% Similarity=0.294 Sum_probs=94.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++++++++.++.+.|.+.+.+.+||++ +++++|+++..|++ .. . ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~v~~~~~l~~~ 75 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GK-----D-PDTTIEKVMTKNPITVNPKTSVASV 75 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-cc-----c-ccccHHHHhcCCCeEECCCCCHHHH
Confidence 578899999999999999998999999999 79999999999996 21 1 1457889998889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 76 AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999999999985
No 54
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.57 E-value=5.4e-14 Score=108.86 Aligned_cols=110 Identities=28% Similarity=0.392 Sum_probs=96.4
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+.+.+||++ +++++|+++..+++ +++.........++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAEA 81 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence 467789999999999999888889999998 78999999999997 5554433333357999998889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|..++...+||+|++|+++|+||..||++
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 55
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=4.4e-14 Score=110.86 Aligned_cols=110 Identities=33% Similarity=0.428 Sum_probs=95.6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCC---------ccccccccccccCceee
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~---------~~~~~v~~~m~~~~~~v 222 (369)
++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..|++ +....... ....++.++|..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 477899999999999999999999999999 68999999999997 44332211 12457888998899999
Q ss_pred cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998899999999999985
No 56
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.57 E-value=7e-14 Score=107.80 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=94.3
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.+++++.++.++++.|.+.+...+||++++++.|+++..|++ .....+......++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 36678999999999999998899999999878899999999997 44433222235678899988899999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999999999985 89999999999975
No 57
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=9.5e-14 Score=107.20 Aligned_cols=110 Identities=30% Similarity=0.459 Sum_probs=94.3
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++++.|.+.+.+.+||+++++++|+++..|+++.+..........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 46778999999999999999899999999966999999999997444333222224578899988889999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+.+.+.+||+|++ +++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999965 9999999999975
No 58
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=8.6e-14 Score=107.11 Aligned_cols=108 Identities=23% Similarity=0.381 Sum_probs=95.9
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++.+++.+.++.++.+.|.+.+++.+||+++++++|+++..|+. ....... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 357889999999999999998899999999889999999999996 4443332 3568899998899999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+..|.+++.+.+||++ +|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999999 899999999999975
No 59
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.4e-14 Score=113.16 Aligned_cols=109 Identities=23% Similarity=0.384 Sum_probs=94.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCc-----------------------cc
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS 208 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~-----------------------~~ 208 (369)
++.++++++++.++++.|.+.+.+.+||++ +++++|+++..|+++ ........ ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAF-AEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHH-Hhhcccccccchhhhhhhhhccccccccccccc
Confidence 367889999999999999999999999999 699999999999974 33221110 13
Q ss_pred cccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.++.++|..++.++++++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4788999888899999999999999999999999999996 99999999999986
No 60
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.2e-14 Score=108.52 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=94.1
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+++.+||++ +|+++|+++.+|++ .+...... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467899999999999999999999999998 68999999999997 44332211 1357888998899999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999997 99999999999874
No 61
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=3.9e-14 Score=109.85 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=91.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcC-CcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CceeecCCCCH
Q 017586 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 228 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l 228 (369)
++.++++++++.++++.|.+++ .+.+||++ +++++|+++.+|++. ...... ...++.++|.. ++.++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRA-IPTSQW--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHH-HHHhhc--cccchhhhhcccccceEECCCCcH
Confidence 4678999999999999987665 88999998 689999999999974 333221 13578888863 36789999999
Q ss_pred HHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 229 ~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.+|++.|.+++.+++||+|++|+++|++|..||++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999998899999999999874
No 62
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.2e-14 Score=106.17 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=84.6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++.+++++.++++.|.+.+++.+||++ +++++|+++.+|++ ... .+.++++++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence 477899999999999999999999999998 78999999999996 210 17889999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++.+++||+|++|+++|+||+.|+++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999986
No 63
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.7e-14 Score=111.08 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=90.7
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHH----HhcC-CCccccccccccccCceee----
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV----ISQN-LPADSTLVEKVMTPNPECA---- 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~----~~~~-~~~~~~~v~~~m~~~~~~v---- 222 (369)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+.+.. ...+ ......++.++|.+++..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 367899999999999999988999999998 78999999999996311 1221 1222467889997654333
Q ss_pred --cCCCCHHHHHHHhHhCCCcEeeEEcCC-CcEEEEEehhHHHH
Q 017586 223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (369)
Q Consensus 223 --~~~~~l~~a~~~~~~~~~~~l~Vvd~~-g~~~Givt~~Di~~ 263 (369)
.+++++.++++.|.+++.+++||+|++ |+++|+||..||++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368999999999999999999999986 89999999999986
No 64
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=4.2e-14 Score=109.55 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=94.5
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcC-CCccccccccccccCceeecCCCCHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.+++++.++.++++.|.+.+.+.+||++ +++++|+++..|+++.+.... ......++.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 467899999999999999988888999998 789999999999974343221 111245788999888999999999999
Q ss_pred HHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 999999999999999997 99999999999986
No 65
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=6.5e-14 Score=111.66 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=94.1
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccc--------------------ccc
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV 211 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~--------------------~~v 211 (369)
++.++.+++++.++++.|.+.+++++||++ +++++|+++..|++ ++......... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 467899999999999999988999999999 78999999999997 44433221111 278
Q ss_pred ccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 212 ~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8889888999999999999999999999999999997 99999999999985
No 66
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.55 E-value=1.2e-13 Score=105.93 Aligned_cols=105 Identities=25% Similarity=0.342 Sum_probs=93.6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.++..+||++ +++++|+++..|++ ..... ..++.++|...+.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~~ 76 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRDV 76 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHHH
Confidence 577899999999999999999999999999 68999999999996 43321 246888898889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+.+.+++||+|++|+++|++|..|+++
T Consensus 77 ~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 77 LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999999999999999999975
No 67
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.55 E-value=1.1e-13 Score=105.64 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=91.8
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ ... ..++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence 467899999999999999988999999998 78999999999997 321 124778888788889999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++...+||+|++|+++|+||..|+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 68
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.55 E-value=9.3e-14 Score=133.17 Aligned_cols=154 Identities=26% Similarity=0.248 Sum_probs=113.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCC-CceeEECCCCcHHHHHHHHHHcCCcE
Q 017586 99 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSS 177 (369)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~ 177 (369)
.+..+.+..+++..+..+ |..+.|.+-..+...... .+++++|... .+++++++++++.++++.|.+++++.
T Consensus 58 tmdtvtgdalAiala~~g-----G~g~Ih~n~sie~qa~lV--~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~ 130 (502)
T PRK07107 58 IMQSVSDDNMAIALAREG-----GLSFIFGSQSIESEAAMV--RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHST 130 (502)
T ss_pred HHHHHhhHHHHHHHHHcC-----CCeEeeCCCCHHHHHHHH--HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCe
Confidence 344555556666655554 444444331111111110 1133444311 23568999999999999999999999
Q ss_pred EEEEeC----CEEEEEeehHHHHHHHHhcCCCcccccccccccc--CceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCc
Q 017586 178 AVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251 (369)
Q Consensus 178 ~~V~~~----~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~ 251 (369)
+||+++ ++++|+||.+|+. .. . ...+.+++++|++ ++.++++++++.+|++.|.+++++.+||+|++|+
T Consensus 131 vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~ 205 (502)
T PRK07107 131 VAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGN 205 (502)
T ss_pred EEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 999984 7999999999994 32 1 1235689999986 7789999999999999999999999999999999
Q ss_pred EEEEEehhHHHHH
Q 017586 252 VVDVVDVIHITHA 264 (369)
Q Consensus 252 ~~Givt~~Di~~~ 264 (369)
++|+||+.|+++.
T Consensus 206 LvGIIT~~Dilk~ 218 (502)
T PRK07107 206 LVYLVFRKDYDSH 218 (502)
T ss_pred EEEEEEhHHHHhc
Confidence 9999999999984
No 69
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.55 E-value=1.7e-14 Score=137.96 Aligned_cols=187 Identities=18% Similarity=0.185 Sum_probs=145.0
Q ss_pred EEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHh-----CCCcEeeEee-CCeEEEEEehHHH
Q 017586 19 CGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKC 92 (369)
Q Consensus 19 ~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~-----~~~~~lpVvd-~~~~vGiv~~~di 92 (369)
.+.++..+- ..+..-..+.+.+++++|+++++++++++++.+|++.|.+ ++...+||+| +++++|+++.+|+
T Consensus 111 L~~l~~~er--~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dL 188 (449)
T TIGR00400 111 LASSTEEER--KAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDL 188 (449)
T ss_pred HHcCCHHHH--HHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHH
Confidence 344444442 3334444777889999999999999999999999999975 4567889887 6899999999987
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHH
Q 017586 93 LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE 172 (369)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~ 172 (369)
+.. ....+++++|. +++.++++++++.++++.|.+
T Consensus 189 l~a-------------------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~~ 223 (449)
T TIGR00400 189 ILA-------------------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQK 223 (449)
T ss_pred hcC-------------------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHHH
Confidence 642 01234777887 468889999999999999999
Q ss_pred cCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCc
Q 017586 173 LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251 (369)
Q Consensus 173 ~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~ 251 (369)
++...+||+| +|+++|+||.+|++ ..+.+. ..+++|+....+..+++.+.+++..|.+++..+++|. .
T Consensus 224 ~~~~~lpVVD~~g~lvGiIt~~Dil-~~l~~~------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~ 292 (449)
T TIGR00400 224 YDFLAVPVVDNEGRLVGIVTVDDII-DVIQSE------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----L 292 (449)
T ss_pred cCCCEEeEEcCCCeEEEEEEHHHHH-HHHHhh------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----H
Confidence 9999999999 79999999999998 444332 2367776555555567888999999999999999885 4
Q ss_pred EEEEEehhHHHHH
Q 017586 252 VVDVVDVIHITHA 264 (369)
Q Consensus 252 ~~Givt~~Di~~~ 264 (369)
+.|++| ..++..
T Consensus 293 ~~~~~t-~~ii~~ 304 (449)
T TIGR00400 293 VSSTFT-ATIISN 304 (449)
T ss_pred HHHHHH-HHHHHH
Confidence 667776 555543
No 70
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.55 E-value=1.5e-13 Score=105.88 Aligned_cols=109 Identities=32% Similarity=0.359 Sum_probs=94.9
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++..+.+++++.++++.|.+.+.+.+||+++++++|+++..|++ +....... ...++.++|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence 47789999999999999998889999999889999999999997 44433221 12367788888999999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999998899999999999975
No 71
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=5.4e-14 Score=112.59 Aligned_cols=110 Identities=26% Similarity=0.390 Sum_probs=94.8
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCC----------------------Cccc
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS 208 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~----------------------~~~~ 208 (369)
.++.++++++++.++++.|.+.++.++||++ +++++|+++..|++. ...... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLR-RAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHH-HhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 4578899999999999999999999999999 689999999999973 322110 0123
Q ss_pred cccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.++.++|..++.++++++++.++++.|.+.+.+.+||+| +|+++|+||+.|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 568889988899999999999999999999999999999 899999999999986
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1e-13 Score=109.88 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=93.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcC------------CCccccccccccccCc
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------LPADSTLVEKVMTPNP 219 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~------------~~~~~~~v~~~m~~~~ 219 (369)
++.++.+++++.++++.|.+.+.+.+||++ +++++|++|..|+++.+.... ......++.++|..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 367889999999999999999999999999 789999999999973322110 0012356889998889
Q ss_pred eeecCCCCHHHHHHHhHhCCCcEeeEEc--CCCcEEEEEehhHHHH
Q 017586 220 ECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH 263 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~g~~~Givt~~Di~~ 263 (369)
+++++++++.+++..|.+.+.+.+||++ ++|+++|+||+.|+++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 9999999999999999999999999984 4699999999999985
No 73
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.54 E-value=1.2e-13 Score=106.09 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=91.5
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++.+.|.+.+++.+||+++++++|+++..|+. +...........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 46788999999999999999999999999889999999999997 44333322223578889988889999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
..|.+ . ..+||++++|+++|+||..|+++
T Consensus 81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 99988 3 34789998899999999999985
No 74
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.54 E-value=1.9e-13 Score=107.04 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=95.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCC----------ccccccccccccCceee
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~~v 222 (369)
++.+++++.++.++++.|.+.++..+||+++++++|+++..|++ ........ ....++.++|.+++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 46789999999999999999999999999989999999999997 43322110 01246788898889999
Q ss_pred cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++++.+++..|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 75
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=9.1e-14 Score=109.06 Aligned_cols=111 Identities=28% Similarity=0.334 Sum_probs=94.6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcC---CC-----ccccccccccccCceeec
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT 223 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~---~~-----~~~~~v~~~m~~~~~~v~ 223 (369)
++.++++++++.++++.|.+.+++++||++ +|+++|+++..|+++...... .. ....++.++|..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 477899999999999999988999999999 799999999999973211110 00 124567888988899999
Q ss_pred CCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999998899999999999986
No 76
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.4e-13 Score=107.78 Aligned_cols=110 Identities=32% Similarity=0.356 Sum_probs=94.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCC---------CccccccccccccCceeec
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECAT 223 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v~ 223 (369)
++.++++++++.++++.|.+.+++.+||+++++++|+++..++++....... .....++.++|..++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE 81 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence 4678999999999999999989999999999999999999999733221111 1123468888988999999
Q ss_pred CCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+++++.+++..|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 82 PDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999999999999997 99999999999985
No 77
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.5e-13 Score=107.89 Aligned_cols=110 Identities=23% Similarity=0.393 Sum_probs=94.9
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCC----------CccccccccccccCceee
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~----------~~~~~~v~~~m~~~~~~v 222 (369)
++.+++++.++.++++.|.+.+++.+||+++++++|+++..|+++ .+.... .....++.++|..+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLK-AISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHH-HHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 477899999999999999999999999999889999999999974 322210 001346888898899999
Q ss_pred cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 78
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2.7e-13 Score=103.34 Aligned_cols=103 Identities=27% Similarity=0.379 Sum_probs=92.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++++.|.+.+.+.+||+++++++|+++..|++ ... ...++.++|..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 46778999999999999998898999999989999999999996 321 13468889988999999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.|.+++...+||+|+ |+++|+||..|++.
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 9999999999999997 99999999999874
No 79
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2.8e-13 Score=103.58 Aligned_cols=105 Identities=27% Similarity=0.383 Sum_probs=93.5
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++.+++.+.++.++++.|.+.+.+.+||+++++++|+++..|++ .. . ...++.++|..++.++++++++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDA 74 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHH
Confidence 457889999999999999988888899999889999999999996 21 1 1456889998888999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999985
No 80
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=1.4e-13 Score=136.18 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=107.8
Q ss_pred HhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017586 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
.+...+++++|. +++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.... .....+.++.++|.
T Consensus 443 ~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~-~~~~~~~~v~dim~ 519 (574)
T PRK01862 443 RLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD-KRDTTDKTAADYAH 519 (574)
T ss_pred HHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc-ccccccchHHHhcc
Confidence 455667899998 5678899999999999999999999999999 7899999999999743332 22222457899999
Q ss_pred cCceeecCCCCHHHHHHHhHhCCCcEeeEEcCC--CcEEEEEehhHHHHHHH
Q 017586 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAV 266 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Givt~~Di~~~~~ 266 (369)
+++.++++++++.++++.|.+++.+.+||+|++ |+++|+||+.|+++++.
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 899999999999999999999999999999976 48999999999998654
No 81
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.51 E-value=2.3e-13 Score=130.75 Aligned_cols=111 Identities=27% Similarity=0.288 Sum_probs=98.9
Q ss_pred ccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccC--cee
Q 017586 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PEC 221 (369)
Q Consensus 148 m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~--~~~ 221 (369)
|. ++++++++++++.++++.|.+++++.+||+++ ++++|+||.+|+. ... ..+.++.++|+++ +.+
T Consensus 106 mi--~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvt 177 (505)
T PLN02274 106 FV--SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVT 177 (505)
T ss_pred cc--CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEE
Confidence 55 57999999999999999999999999999984 7999999999994 321 1256899999866 789
Q ss_pred ecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHH
Q 017586 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~ 266 (369)
+++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++...
T Consensus 178 v~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 178 APAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 999999999999999999999999999999999999999998654
No 82
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.51 E-value=2.3e-13 Score=131.30 Aligned_cols=115 Identities=27% Similarity=0.337 Sum_probs=103.4
Q ss_pred CccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc-cCce
Q 017586 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPE 220 (369)
Q Consensus 143 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~-~~~~ 220 (369)
.++++|. .++.++++++++.++++.|.+++++++||++ +++++|++|.+|+. ... . ...++.++|. ++++
T Consensus 88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~v 159 (486)
T PRK05567 88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERLV 159 (486)
T ss_pred hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCCE
Confidence 4678887 6899999999999999999999999999999 89999999999995 221 1 2457899998 7889
Q ss_pred eecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHH
Q 017586 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~ 265 (369)
++++++++.++++.|.+++.+.+||+|++|+++|+||..||++..
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 999999999999999999999999999999999999999999865
No 83
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=3.9e-13 Score=101.30 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=82.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++++++++++.+|.+.|.+++++++||+| + ++++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 467899999999999999999999999998 4 799999999998643
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll 196 (369)
..+.++.+++++.+|++.|.+++.+++||++ + |+++|++|.+|++
T Consensus 50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 0067899999999999999999999999999 5 8999999999996
No 84
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.50 E-value=3.1e-13 Score=103.82 Aligned_cols=106 Identities=32% Similarity=0.438 Sum_probs=91.8
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecC-CCCHH
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV 229 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~-~~~l~ 229 (369)
+++.++++++++.++++.|.+.+++.+||++ +|+++|+++.++++ ... ....++.++|..++..+.+ ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence 3577899999999999999989999999998 68999999999985 221 1245788999776676666 99999
Q ss_pred HHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999998899999999999985
No 85
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.5e-13 Score=104.40 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=88.5
Q ss_pred ECCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 017586 157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 157 v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
+.+++++.++++.|.+++ +..+||++ +++++|+++.++++ .. . ...++.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-LA-----D-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-cC-----C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 578899999999998776 46789998 78999999999996 21 1 145788999888999999999999
Q ss_pred HHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
+++.|...+.+.+||+|++|+++|+||..|++++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999988999999999999974
No 86
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.49 E-value=5.1e-13 Score=103.58 Aligned_cols=105 Identities=28% Similarity=0.342 Sum_probs=90.9
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecC--CC
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--DT 226 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~--~~ 226 (369)
++.++.+++++.++++.|.+.+...+||+++ ++++|+++.+|++ ... .. ..++.++|..++.++.. ++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~~----~~~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-DS----ETPLSEVMTPREVLVVAPTGI 76 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-cc----CCCHHHhcCCCceEEECCCCC
Confidence 4778899999999999999888899999983 7999999999985 322 11 24688999877777766 99
Q ss_pred CHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 227 ~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 77 ~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 77 TLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999999998999999999999875
No 87
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.49 E-value=7.1e-13 Score=127.95 Aligned_cols=172 Identities=21% Similarity=0.252 Sum_probs=130.0
Q ss_pred ccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 017586 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (369)
Q Consensus 42 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
.++++|.++++++++++++.++++.|.+++++++||+| +++++|+++..|+....
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------ 143 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------ 143 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence 56788999999999999999999999999999999998 69999999999975320
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHH
Q 017586 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (369)
Q Consensus 121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~ 199 (369)
....++.++|.+ .+++++++++++.++++.|.+++.+.+||++ +++++|++|.+|+++..
T Consensus 144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 011246677762 4688999999999999999999999999999 89999999999998443
Q ss_pred HhcCCC---ccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEc-CCCcEEEEEehhHHHHH
Q 017586 200 ISQNLP---ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHA 264 (369)
Q Consensus 200 ~~~~~~---~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Givt~~Di~~~ 264 (369)
...... .....+...|.. ++ .-.+..+.|.+.+.+.+ |+| .+|+..|+++..+.++.
T Consensus 205 ~~p~a~~d~~g~l~V~aai~~-----~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 205 EFPNACKDEQGRLRVGAAVGV-----GA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred hCCCcccccCCCEEEEeeccc-----Cc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 221110 012234444432 22 12677888888999855 565 46888787766666654
No 88
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.48 E-value=1e-12 Score=102.13 Aligned_cols=109 Identities=34% Similarity=0.444 Sum_probs=95.7
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++.++.++.++.++...|.++++..+||.+.++++|++|.+|++ +....+... ..++.++|..++.++.++.++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence 568999999999999999999999999999877999999999998 444333221 126899998899999999999999
Q ss_pred HHHhHh-CCCcEeeEEcCCC-cEEEEEehhHHH
Q 017586 232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT 262 (369)
Q Consensus 232 ~~~~~~-~~~~~l~Vvd~~g-~~~Givt~~Di~ 262 (369)
++.|.+ ++.+.+||+|+++ +++|++|..|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 7999999999886 999999999973
No 89
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=6.6e-13 Score=102.47 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=89.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.+++.+.+||++ +++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP------------------------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence 467889999999999999999999999998 689999999999865200
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
+.....++.++|. .++.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 51 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 51 --------NDYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred --------ccccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 0011224667776 5678899999999999999999999999999 69999999999996
No 90
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.48 E-value=1.1e-12 Score=100.76 Aligned_cols=110 Identities=34% Similarity=0.440 Sum_probs=94.2
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++.+|++ .............+.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 467889999999999999998899999999 68999999999997 4443332221223677888889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+..|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999975
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-13 Score=128.28 Aligned_cols=94 Identities=33% Similarity=0.469 Sum_probs=89.0
Q ss_pred CccCCcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC
Q 017586 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~ 80 (369)
|.++++++++++++++.+.||+|.+|+.+++++.+.+. ..+|+++|+.++++++.++.+.+|+-.|.+++++++||.++
T Consensus 175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 67899999999999999999999999999999988554 78999999999999999999999999999999999999999
Q ss_pred CeEEEEEehHHHHHH
Q 017586 81 GEVIALLDIAKCLYD 95 (369)
Q Consensus 81 ~~~vGiv~~~dil~~ 95 (369)
|+++|+++..|+++.
T Consensus 254 gq~~Gilt~~dIl~l 268 (610)
T COG2905 254 GQPLGILTLTDILRL 268 (610)
T ss_pred CeeeEEeeHHHHHHh
Confidence 999999999999876
No 92
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.47 E-value=6.1e-13 Score=127.36 Aligned_cols=121 Identities=19% Similarity=0.242 Sum_probs=104.7
Q ss_pred hcCCCccccccCCCceeEECCCCcHHHHHHHHHH-----cCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc
Q 017586 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE 212 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~ 212 (369)
+...+++++|+ +++.+++++.++.++++.|.+ .+...++|++ +++++|+++.+|++ .. . .+.+++
T Consensus 128 ~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~a-----~-~~~~v~ 198 (449)
T TIGR00400 128 YSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-LA-----K-PEEILS 198 (449)
T ss_pred CCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-cC-----C-CCCcHH
Confidence 34567999998 689999999999999999975 3456788888 78999999999996 21 1 245799
Q ss_pred cccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHH
Q 017586 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (369)
Q Consensus 213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~ 268 (369)
++|.+++.++++++++.+|++.|.+++...+||+|++|+++|+||..|+++.+..+
T Consensus 199 ~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 199 SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 99998889999999999999999999999999999999999999999999877543
No 93
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.47 E-value=8.9e-13 Score=100.43 Aligned_cols=100 Identities=26% Similarity=0.241 Sum_probs=89.0
Q ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHH
Q 017586 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 234 (369)
Q Consensus 155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~ 234 (369)
.+++++.++.++++.|.+.+++.+||+++++++|+++.+|++ ... ..++.++|..++.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 467899999999999999999999999889999999999996 321 234677888889999999999999999
Q ss_pred hHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 235 MHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 235 ~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
|.+++...+||+| +|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999998 699999999999875
No 94
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.47 E-value=5.4e-13 Score=123.11 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=100.6
Q ss_pred Ccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 017586 39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (369)
Q Consensus 39 ~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
...+++++|++ +++++++++++.+|++.|.++++..+||+| +|+++|+++..|+.+....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~----------------- 262 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM----------------- 262 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence 55689999997 899999999999999999999988888887 7999999999997642100
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHH
Q 017586 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195 (369)
Q Consensus 116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl 195 (369)
+. .....++.++|. +++.++.+++++.++++.|.+++.+.+||+++++++|++|..|+
T Consensus 263 ------~~--------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 263 ------GI--------------DLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ------CC--------------CcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 00 011235788897 57899999999999999999999999999998899999999999
Q ss_pred H
Q 017586 196 L 196 (369)
Q Consensus 196 l 196 (369)
+
T Consensus 321 l 321 (326)
T PRK10892 321 L 321 (326)
T ss_pred H
Confidence 7
No 95
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.47 E-value=2e-12 Score=123.28 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=136.1
Q ss_pred EEEEcCCCcEEEEEehhHHHHHHHhcc------C---------CCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCc
Q 017586 9 LLLTDSNALLCGILTDKDIATRVIARE------L---------NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFR 73 (369)
Q Consensus 9 ~~V~d~~~~~~Givt~~di~~~~~~~~------~---------~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~ 73 (369)
+|++.. ...-+|+.+++..+...+ . .+...++.++|.++++++++++++.+|++.|.+++++
T Consensus 45 ~Pi~sa---~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s 121 (479)
T PRK07807 45 IPLVVA---NMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHG 121 (479)
T ss_pred cceeec---CCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCc
Confidence 566653 335677777765555444 1 2335678899999999999999999999999999999
Q ss_pred EeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCC
Q 017586 74 HLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152 (369)
Q Consensus 74 ~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 152 (369)
.+||+| +++++|+|+.+|+... -...++.++|+ .
T Consensus 122 ~l~VVD~~gklvGIVT~rDL~~~-------------------------------------------~~~~~V~diMt--~ 156 (479)
T PRK07807 122 AVVVVDEEGRPVGVVTEADCAGV-------------------------------------------DRFTQVRDVMS--T 156 (479)
T ss_pred eEEEECCCCeEEEEEeHHHHhcC-------------------------------------------ccCCCHHHhcc--C
Confidence 999998 6899999999887321 00124778887 6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++++++++.++++.|.+++...+||+| +++++|+||.+|++ +....... ...-...+..... .......+.
T Consensus 157 ~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl-~~~~~~~~--~~~~g~l~V~aav--~~~~~~~~~ 231 (479)
T PRK07807 157 DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGAL-RATIYTPA--VDAAGRLRVAAAV--GINGDVAAK 231 (479)
T ss_pred CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHH-HHhhCCch--hhhhhccchHhhh--ccChhHHHH
Confidence 799999999999999999999999999999 79999999999998 43322110 0000011111111 223346778
Q ss_pred HHHhHhCCCcEeeEEc-CCCc
Q 017586 232 LHIMHDGKFLHLPVVD-RDGD 251 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd-~~g~ 251 (369)
+..|.+.+.+. .++| .+|.
T Consensus 232 a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 232 ARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred HHHHHHhCCCE-EEEeccCCc
Confidence 88888888886 4566 3444
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.46 E-value=2.6e-12 Score=119.23 Aligned_cols=201 Identities=22% Similarity=0.271 Sum_probs=143.6
Q ss_pred ccccccc--cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 017586 42 PVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (369)
Q Consensus 42 ~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
+..+++- ...+.++...++.+|+..+..++.+..|+++ ..++.|+++..|++...........
T Consensus 67 ~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~------------- 133 (381)
T KOG1764|consen 67 TCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS------------- 133 (381)
T ss_pred CcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC-------------
Confidence 4445542 3678899999999999999999999999998 5899999999999887554322100
Q ss_pred HHhcCCCCCChhhHHHHHHH--HhcCCCcccc--ccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEee
Q 017586 118 EKHWGTSISGPNTFIETLRE--RMFRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILT 191 (369)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~i--m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt 191 (369)
.. +....+.. ......+..+ ....++++.+.+..++.++...+.+.+++++||.| .+.+..++|
T Consensus 134 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt 203 (381)
T KOG1764|consen 134 ---------SL-DNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILT 203 (381)
T ss_pred ---------cH-HHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehh
Confidence 00 00000000 0011111011 11113348899999999999999999999999998 689999999
Q ss_pred hHHHHHHHHhcCCCcc------cccccccc---ccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHH
Q 017586 192 SKDILMRVISQNLPAD------STLVEKVM---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262 (369)
Q Consensus 192 ~~dll~~~~~~~~~~~------~~~v~~~m---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~ 262 (369)
.+-++ +++....... ..++.+.- ......+.+++++.+|+++|..+++..+||||++|+.+|++++.|+.
T Consensus 204 ~~rIl-~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~ 282 (381)
T KOG1764|consen 204 QRRIL-KFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI 282 (381)
T ss_pred HHHHH-HHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh
Confidence 99998 4443322211 12222221 13578899999999999999999999999999999999999999999
Q ss_pred HHHH
Q 017586 263 HAAV 266 (369)
Q Consensus 263 ~~~~ 266 (369)
....
T Consensus 283 ~l~~ 286 (381)
T KOG1764|consen 283 HLAR 286 (381)
T ss_pred hhhh
Confidence 7543
No 97
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.45 E-value=9e-13 Score=103.15 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=93.3
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCC---------CccccccccccccCceee
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v 222 (369)
++.++++++++.++.+.|.+.+++.+||++ +++++|+++..|++ ....... .....++.++|..++.++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 467899999999999999989999999999 69999999999997 3322100 112356888998899999
Q ss_pred cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
++++++.++++.|.+.+...+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999986 99999999999985
No 98
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.4e-12 Score=105.47 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=93.7
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCC---------------------------
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP--------------------------- 205 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~--------------------------- 205 (369)
++.++++++++.++++.|.+.+++.+||+++++++|+++..|++ +++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 47789999999999999999999999999888999999999997 44332110
Q ss_pred -----ccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 206 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 206 -----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
....++.++|..++.++++++++.+++..|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0134677888889999999999999999999999999999997 99999999999975
No 99
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.44 E-value=1.5e-12 Score=99.45 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=87.6
Q ss_pred CceeEECCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCC
Q 017586 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~ 227 (369)
+....+.++.++.++.+.+.+.++..+||+++ ++++|+++.+|+. ..... +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~ 69 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS 69 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence 35678899999999999999988889999985 7899999999996 33321 77778899999999
Q ss_pred HHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+.++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 99999999999999999995 789999999999986
No 100
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=6.8e-13 Score=102.82 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=82.3
Q ss_pred CccCCcCEEEEEcCC-CcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee
Q 017586 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE 79 (369)
Q Consensus 1 M~~~~~~~~~V~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd 79 (369)
|.+++.+.+||+|++ ++++|++|..|+++.+..........++.++|.+++.++++++++.+|++.|.+++...+||++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence 456788899999986 8999999999998666654444556789999988999999999999999999999999999998
Q ss_pred CCeEEEEEehHHHHH
Q 017586 80 NGEVIALLDIAKCLY 94 (369)
Q Consensus 80 ~~~~vGiv~~~dil~ 94 (369)
+|+++|+++..++++
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 99 NNELIGIISLTDIFL 113 (114)
T ss_pred CCEEEEEEEHHHhhc
Confidence 899999999999864
No 101
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.44 E-value=9.4e-13 Score=118.22 Aligned_cols=112 Identities=27% Similarity=0.361 Sum_probs=98.3
Q ss_pred CCccccccCCCc-eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCc
Q 017586 142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 142 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
.+++++|. ++ +.++.+++++.++++.|.+.+.+.+||++ +++++|+++..|+. +....+.. ...++.++|.+++
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~~ 230 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLGP 230 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCCC
Confidence 46889998 44 88999999999999999998999999999 78999999999997 44433222 2567999999899
Q ss_pred eeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEe
Q 017586 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt 257 (369)
.++++++++.+|++.|.+.+...+||+|++|+++|+|+
T Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999998899999984
No 102
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=7.8e-13 Score=102.56 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=80.4
Q ss_pred CccCCcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-
Q 017586 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE- 79 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd- 79 (369)
|.+++...+||+|++|+++|++|..|+.+............++.++|.++++++.+++++.+|++.|.+++..++||++
T Consensus 19 ~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 19 LGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 4567889999999899999999999998544331223345789999999999999999999999999999999999998
Q ss_pred CCeEEEEEehHHHHH
Q 017586 80 NGEVIALLDIAKCLY 94 (369)
Q Consensus 80 ~~~~vGiv~~~dil~ 94 (369)
+|+++|+++..++++
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 99 NARPLGVLNARDALK 113 (114)
T ss_pred CCcEEEEEEhHhhcc
Confidence 589999999998763
No 103
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=2.5e-12 Score=96.48 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=82.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++.+++++.+|++.|.+++++.+||+| +++++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 577899999999999999999999999998 6899999999997642
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
..+.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 1277899999999999999999999999999 58999999999996
No 104
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.43 E-value=2.2e-12 Score=124.50 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=102.6
Q ss_pred HHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017586 136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (369)
Q Consensus 136 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~ 214 (369)
.+.+...+++++|. +++.++.+++++.++++.|.+.+++.+||++ +++++|+||.+|+++.+.. .......++.++
T Consensus 329 ~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-~~~~~~~~v~~i 405 (454)
T TIGR01137 329 FDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA-GKANPDDAVSKV 405 (454)
T ss_pred HHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc-cCCCcCCCHHHh
Confidence 33466678899998 5799999999999999999999999999998 7899999999999743433 222224579999
Q ss_pred cccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHH
Q 017586 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~ 265 (369)
|.+++.++++++++.++++.|.+++ .|||+++|+++|+||+.||++++
T Consensus 406 m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 9888899999999999999998864 35555579999999999999853
No 105
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.42 E-value=2.7e-13 Score=121.05 Aligned_cols=183 Identities=27% Similarity=0.280 Sum_probs=136.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhH-HHHHHH-HhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCC
Q 017586 98 ARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF-IETLRE-RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~ 175 (369)
+.|+++++..+++.+++.+ |..++|++-. ..+... +-.+.-...++ .+++.++|+.++.++++....+++
T Consensus 68 SpMDTVtes~MAiaMAl~g-----gIg~IHhNctpe~QA~~v~~vK~~~~g~~---~~p~v~sp~~tvg~v~~~k~~~gF 139 (503)
T KOG2550|consen 68 SPMDTVTESEMAIAMALLG-----GIGFIHHNCTPEDQADMVRRVKNYENGFI---NNPIVISPTTTVGEVKEAKEKHGF 139 (503)
T ss_pred cCCcccchhHHHHHHHhcC-----CceeeecCCCHHHHHHHHHHHHHhhcccc---cCCcccCCcccchhhhhhcccccc
Confidence 4577778888888888877 7777777622 222111 11111112223 358889999999999999999999
Q ss_pred cEEEEEe----CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCc
Q 017586 176 SSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251 (369)
Q Consensus 176 ~~~~V~~----~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~ 251 (369)
..+||++ +.+++|+||.+|+ .++.+ ...++.++|+..+++.+.+.++.++.+++.+++...+||||++|+
T Consensus 140 ~g~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~ge 213 (503)
T KOG2550|consen 140 SGIPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGE 213 (503)
T ss_pred cccccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCc
Confidence 9999996 5789999999999 44432 257899999988899999999999999999999999999999999
Q ss_pred EEEEEehhHHHHHHHHHhcccCCCchH--------HHHHHHHHHHHHhhcCCCCCC
Q 017586 252 VVDVVDVIHITHAAVATVRNTAGSNNE--------AASTMMQKFWDSAMALSPNDD 299 (369)
Q Consensus 252 ~~Givt~~Di~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 299 (369)
++.+|++.||.+ ..+++....+ ++...+++..+++..+..++.
T Consensus 214 lva~~~rtDl~k-----~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aGv 264 (503)
T KOG2550|consen 214 LVAMLSRTDLMK-----NRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAGV 264 (503)
T ss_pred eeeeeehhhhhh-----hcCCCccccCcccceeeeeccccccchhHHHHHhhhcCC
Confidence 999999999998 4444433332 455555556666655555443
No 106
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.5e-12 Score=101.94 Aligned_cols=116 Identities=23% Similarity=0.282 Sum_probs=88.5
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.+|++.|.+++++++||++ +|+++|+++..|++.....+. ...
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~------------------------~~~ 56 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGA------------------------YNN 56 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCc------------------------ccc
Confidence 3678899999999999999999999999998 789999999999886421110 000
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
. ...+...+ ....+|. .++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 57 ~---~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 57 L---DLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred c---cCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 0 00000001 0123343 4578999999999999999999999999999 68999999999986
No 107
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=3.2e-12 Score=98.97 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=87.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCC-CcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++.++++++++.+|++.|.+++ .+.+||+| +++++|+++..|++.....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~----------------------------- 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS----------------------------- 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh-----------------------------
Confidence 5678999999999999997775 88999998 5899999999998764110
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....++.++|.+...+.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 53 ----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 53 ----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred ----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 001233566776433466899999999999999999999999999 58999999999986
No 108
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.40 E-value=1.3e-11 Score=117.71 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=100.2
Q ss_pred CccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 017586 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 39 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
...++.++|.++++++.+++++.+++++|.+++++.+||+|+++++|+|+.+|+...
T Consensus 86 ~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~----------------------- 142 (475)
T TIGR01303 86 AFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV----------------------- 142 (475)
T ss_pred hhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC-----------------------
Confidence 356788999999999999999999999999999999999998899999999996321
Q ss_pred HhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHH
Q 017586 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~ 197 (369)
-...+++++|+ .+++++++++++.++++.|.+++.+.+||++ +++++|+||.+|+++
T Consensus 143 --------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 143 --------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred --------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 00124778887 5799999999999999999999999999999 899999999999984
No 109
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=4.7e-12 Score=98.76 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=90.8
Q ss_pred ceeEECCCCcHHHHHHHHHHcC-CcEEEEEeCCEEEEEeehHHHHHHHHhcCC---CccccccccccccCceeecCCCCH
Q 017586 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI 228 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~dll~~~~~~~~---~~~~~~v~~~m~~~~~~v~~~~~l 228 (369)
++.++++++++.++++.|...+ ++.+||+++++++|+++..|++ +...... .....++.++|..++.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 3667899999999999998876 8899999889999999999997 4332210 011457889998899999999999
Q ss_pred HHHHHHhHhCCCc---EeeEEcCCCcEEEEEehhHHHH
Q 017586 229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 229 ~~a~~~~~~~~~~---~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.+++..|.+++.. ..||++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999988754 3468888999999999999985
No 110
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1.1e-11 Score=95.16 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=90.0
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.+++.++++.++.+.|.++++..+||+++++++|+++..++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------ 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------ 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence 46788999999999999999999999999988999999999997653100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.....++.++|. ..+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 52 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 52 ---------GLGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ---------ccccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 001234566665 468889999999999999999999999999988999999999986
No 111
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=5.9e-12 Score=98.21 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=89.3
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.++++..+||+| +++++|+++..++.+.....
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----------------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----------------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence 567899999999999999999999999998 58999999999987652100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dll 196 (369)
......++.++|....++.++++++++.++++.|.+++.+.+||++ + ++++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 0011223556665213588999999999999999999999999998 5 5899999999985
No 112
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.39 E-value=3.3e-12 Score=117.73 Aligned_cols=118 Identities=12% Similarity=0.163 Sum_probs=100.2
Q ss_pred ccccccccccC--CeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 017586 40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 40 ~~~v~dim~~~--~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
..+|+++|.++ +.++++++++.+|++.|.+++...+||+| +|+++|+++..|+.+.....
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~----------------- 258 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG----------------- 258 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-----------------
Confidence 46799999987 99999999999999999999999999998 68999999998876531100
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHH
Q 017586 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (369)
.....++.++|. .++.++.+++++.++++.|.+++...+||++ +++++|++|.+|+
T Consensus 259 ---------------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 259 ---------------------GALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred ---------------------CCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 011234678887 5688999999999999999999999999999 7899999999999
Q ss_pred HH
Q 017586 196 LM 197 (369)
Q Consensus 196 l~ 197 (369)
++
T Consensus 316 ~~ 317 (321)
T PRK11543 316 YQ 317 (321)
T ss_pred Hh
Confidence 73
No 113
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=9.5e-12 Score=94.67 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=87.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.++++.|.+++++.+||+++++++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 56788999999999999999999999999999999999999886420
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
...++.++|. .++.++++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus 49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 0112455565 468899999999999999999999999999989999999999985
No 114
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1e-11 Score=94.76 Aligned_cols=103 Identities=28% Similarity=0.409 Sum_probs=90.0
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++.++.++.+++..|.+.+++.+||++ +++++|+++.++++ .. . ...++.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~----~--~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN----P--EEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc----c--ccchHHHHhcCCCceECCCCCHHHH
Confidence 367889999999999999988999999998 68999999999996 31 1 1345778888889999999999999
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
+..|.+++.+.+||+| +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 489999999999875
No 115
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.9e-12 Score=98.14 Aligned_cols=94 Identities=35% Similarity=0.615 Sum_probs=80.8
Q ss_pred CccCCcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC
Q 017586 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~ 80 (369)
|.+++...+||+|++++++|+++.+|+++.+..........++.++|.+++.++.+++++.++++.|.+++.+.+||+++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 19 MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence 34677889999998899999999999986554433233356899999889999999999999999999999999999988
Q ss_pred CeEEEEEehHHHHH
Q 017586 81 GEVIALLDIAKCLY 94 (369)
Q Consensus 81 ~~~vGiv~~~dil~ 94 (369)
++++|+++..++++
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04623 99 GKLVGIVSIGDVVK 112 (113)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999864
No 116
>PRK11573 hypothetical protein; Provisional
Probab=99.37 E-value=1.4e-11 Score=116.23 Aligned_cols=132 Identities=11% Similarity=0.185 Sum_probs=105.5
Q ss_pred HHhccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHh
Q 017586 31 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK 106 (369)
Q Consensus 31 ~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~ 106 (369)
++.+..++.+.+++++|++ ++++++.++++.++++.+.+++++++||.++ +.++|++..+|++......
T Consensus 177 mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~------- 249 (413)
T PRK11573 177 MLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK------- 249 (413)
T ss_pred HHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc-------
Confidence 3345558889999999986 7899999999999999999999999999973 8999999999998531100
Q ss_pred hhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCE
Q 017586 107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK 185 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~ 185 (369)
.. .....+.+++ +++..++++.++.++++.|++++.+...|+| .|.
T Consensus 250 ----------------~~--------------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~ 296 (413)
T PRK11573 250 ----------------KE--------------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD 296 (413)
T ss_pred ----------------Cc--------------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCC
Confidence 00 0000122333 3588999999999999999999999999999 799
Q ss_pred EEEEeehHHHHHHHHhc
Q 017586 186 PRGILTSKDILMRVISQ 202 (369)
Q Consensus 186 ~~Givt~~dll~~~~~~ 202 (369)
..|+||..|+++.+..+
T Consensus 297 ~~GiVTleDilEeivGe 313 (413)
T PRK11573 297 IQGLVTVEDILEEIVGD 313 (413)
T ss_pred eEEEeeHHHHHHHHhCC
Confidence 99999999999666654
No 117
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=2e-11 Score=95.91 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=88.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++.++++++++.+|++.|.+++++++||+| + ++++|+++..|+++...........
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~---------------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG---------------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc----------------------
Confidence 567889999999999999999999999998 5 8999999999988753221100000
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (369)
..... .......++|. .++.++++++++.+|++.|.+++.+++||++ +++++|+||.+|+
T Consensus 60 ----~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 60 ----LDPLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ----hhhhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 00000 00011234454 5688999999999999999999999999998 7899999999998
No 118
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=2.3e-11 Score=93.75 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=88.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
.+.++++++++.++++.|.+++...++|.++++++|+++..++++..... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------~------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQH----------------------G------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhc----------------------C-------
Confidence 46788999999999999988888888888889999999999987652110 0
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
......++.++|. ..+.++.+++++.++++.|.+++...+||+++++++|++|.+|++
T Consensus 53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 0001124667775 457889999999999999999999999999989999999999996
No 119
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=2.6e-11 Score=93.13 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=88.9
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.++++++++.++++.|.+++++.+||+++++++|+++..++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 357789999999999999999999999999889999999999987641100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....++.++|. .++.++++++++.++++.|.+.+.+.+||++ ++++.|+++..|++
T Consensus 52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 00023555554 5688999999999999999999999999998 58999999999986
No 120
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.8e-11 Score=96.26 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=93.0
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.++.+.|.+++++.+||++ +|+++|+++..+++.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~------------------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR------------------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence 5788999999999999999999999999998 59999999999987542111000
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.............++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 57 --PLRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred --hhhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 00000001122334677776 5788999999999999999999999999999 89999999999996
No 121
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=2.4e-11 Score=93.43 Aligned_cols=109 Identities=25% Similarity=0.344 Sum_probs=89.9
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.+++++.++.++.+.|.+++++.+||+++++++|+++..+++...... +
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~----------------------~------ 52 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE----------------------G------ 52 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc----------------------C------
Confidence 356789999999999999999999999999989999999999987532110 0
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.....++.++|. .++.++++++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 53 ---------~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 53 ---------LDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred ---------CCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 001123556665 568899999999999999999999999999888999999999996
No 122
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.6e-11 Score=94.47 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=88.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+.++..+||++ +++++|+++..++.+.....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG----------------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence 467789999999999999989999999998 58999999999987542110
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....++.++|. .++.++++++++.++++.|.+++...+||++ +++++|++|.+|+.
T Consensus 53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 01123556665 5688999999999999999999999999999 59999999999985
No 123
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=3.5e-11 Score=92.89 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=89.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+++++.+||+| +++++|+++..++.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 367889999999999999999999999998 58999999999987542210
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
+.....++.++|. .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 1122234666775 4688899999999999999999999999998 78999999999996
No 124
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=2.9e-11 Score=116.17 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=96.7
Q ss_pred ccccccc---cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHH
Q 017586 42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (369)
Q Consensus 42 ~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~ 114 (369)
+++++|. ..+.++++++++.+|++.|.++++..+||+|+ ++++|+|+..|+...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~------------------- 155 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS------------------- 155 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence 4556654 34568999999999999999999999999984 799999999997421
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehH
Q 017586 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (369)
Q Consensus 115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~ 193 (369)
......+++++|++..+++++++++++.+|++.|.++++..+||+| +++++|+||.+
T Consensus 156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 0012345889998655789999999999999999999999999999 78999999999
Q ss_pred HHHH
Q 017586 194 DILM 197 (369)
Q Consensus 194 dll~ 197 (369)
|+++
T Consensus 214 Dilk 217 (502)
T PRK07107 214 DYDS 217 (502)
T ss_pred HHHh
Confidence 9983
No 125
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.34 E-value=3.2e-11 Score=91.95 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=86.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.+++++.+||++ +|+++|+++..+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 567889999999999999999999999998 69999999999987430
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
..++.++|. ..+..+.+++++.++++.|.+.+.+.+||++ +++++|+++.++++
T Consensus 50 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 50 ------------GGCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred ------------ccchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 012445565 3467899999999999999999999999998 68999999999986
No 126
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.3e-11 Score=94.02 Aligned_cols=110 Identities=25% Similarity=0.413 Sum_probs=90.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+++++.+||++ +++++|+++..++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY--------------------------- 54 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence 567899999999999999999999999998 6899999999998865322100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
......++.++|. .++.++.+++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 55 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 55 --------HCDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred --------ccCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 0011234566665 468889999999999999999999999999888999999999996
No 127
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2e-11 Score=93.53 Aligned_cols=103 Identities=14% Similarity=0.240 Sum_probs=87.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
.++.++.+++++.+|+..|.+++.+.+||+| +++++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-------------------------------- 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------------------------------- 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc--------------------------------
Confidence 3577899999999999999999999999998 6999999999887632
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....++.++|. ..+.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus 50 -----------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 50 -----------DPDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred -----------cccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 00123555665 4588999999999999999999999999998 78999999999986
No 128
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.8e-11 Score=92.54 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.++++.|.+++.+.+||+++++++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence 567889999999999999999999999999779999999999886422100
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
......++.++|. .++..+.+++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus 53 -------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 53 -------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred -------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 0001223566775 468889999999999999999999999999956999999999986
No 129
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.33 E-value=3.7e-11 Score=92.35 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=89.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.+|++.|.++++..+||+++++++|+++..++++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~----------------------------- 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP----------------------------- 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence 466889999999999999999999999999899999999999876421100
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
-...++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|++.|+++.+|++
T Consensus 53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 01233566665 4688899999999999999999999999998 68999999999986
No 130
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.33 E-value=6.5e-11 Score=112.81 Aligned_cols=139 Identities=17% Similarity=0.280 Sum_probs=114.5
Q ss_pred EEEEehhHHHHHHHhccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEee--CCeEEEEEehHHHHH
Q 017586 19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLY 94 (369)
Q Consensus 19 ~Givt~~di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~ 94 (369)
.|.++..+ ++++.+.+++.+.+++++|++ ++.+++.+.++.++.+.+.+++++++||.+ .+.++|+++.+|++.
T Consensus 186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 57777777 477778889999999999996 678999999999999999999999999998 389999999999997
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcC
Q 017586 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~ 174 (369)
.....-. .......+ .++..++++.++.++++.|++.+
T Consensus 264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~ 301 (429)
T COG1253 264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER 301 (429)
T ss_pred HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence 6332100 00011111 25899999999999999999999
Q ss_pred CcEEEEEe-CCEEEEEeehHHHHHHHHh
Q 017586 175 LSSAVVTV-ENKPRGILTSKDILMRVIS 201 (369)
Q Consensus 175 ~~~~~V~~-~~~~~Givt~~dll~~~~~ 201 (369)
.+...|+| .|...|+||..|+++....
T Consensus 302 ~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 302 THMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 99999999 7999999999999966654
No 131
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.9e-11 Score=96.80 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=93.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|+..|.+++++.+||+| +++++|+++..+++............... .... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~-~~~~-----~~~------- 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKS-IKMK-----RKA------- 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhh-hhhh-----hhc-------
Confidence 467889999999999999999999999998 59999999999998753211000000000 0000 000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.........+...+++++|. .++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 69 -~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 69 -GQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred -ccccccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 00000001123446788887 568899999999999999999999999999989999999999986
No 132
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.33 E-value=3.1e-11 Score=93.53 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=88.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+.++..+||+| +++++|+++..++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEAD----------------------------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence 567889999999999999999999999998 59999999999987642110
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C--CEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~dll 196 (369)
......++.++|. .++.++.+++++.++++.|.+++...+||++ + ++++|++|.+|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 53 --------EAGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred --------cccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 0001122555665 5688999999999999999999999999998 5 7999999999996
No 133
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=3.8e-11 Score=93.93 Aligned_cols=118 Identities=24% Similarity=0.258 Sum_probs=92.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++.+++++.++++.|.+++++.+||+++++++|+++..++.+.........
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~-------------------------- 55 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV-------------------------- 55 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc--------------------------
Confidence 577899999999999999999999999999999999999999876422110000
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
+...........++.++|. .++.++++++++.++++.|.+.+.+.+||+++++++|+++..|++
T Consensus 56 -~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 56 -RDRHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred -cchhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 0000011122334666776 568899999999999999999999999999889999999999996
No 134
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.32 E-value=3.8e-11 Score=92.41 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
+++++++++++.++++.|.+++...+||+|+++++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 46788999999999999999999999999888999999999987541100
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
......++.++|. .++..+++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus 52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 0011223556665 468899999999999999999999999999988999999999986
No 135
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=3.5e-11 Score=92.58 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=88.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+++++.+||++ +|+++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 567889999999999999999999999998 59999999999987541100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.....++.++|. +++.++.+++++.++++.|.+++...+||+++++++|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 001123556665 568899999999999999999999999999888999999999986
No 136
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.32 E-value=8.8e-12 Score=98.21 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=88.4
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.++++.|.++++..+||++ +++++|+++..+++......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh----------------------------
Confidence 4678899999999999999999999999998 58999999999987642211
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHH---------HcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML---------ELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~---------~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
......+++++|. .++.++.+++++.++.+.+. +.+...+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~ 121 (124)
T cd04608 54 ---------KVQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL 121 (124)
T ss_pred ---------ccCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence 0012345888887 67889999999999998653 23567778887 68999999999997
No 137
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.32 E-value=5.1e-11 Score=90.66 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=84.9
Q ss_pred eEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhH
Q 017586 52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF 131 (369)
Q Consensus 52 i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (369)
+++++++++.++++.|.++++..+||+++++++|+++..++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 468999999999999999999999999889999999998876420
Q ss_pred HHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 132 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
..++.++|. ..+.+++++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 011344554 457889999999999999999999999999989999999999986
No 138
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.3e-11 Score=97.25 Aligned_cols=132 Identities=21% Similarity=0.287 Sum_probs=94.6
Q ss_pred ccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCC
Q 017586 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 48 ~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
++++.++++++++.++++.|.+++++++||++ +++++|+++..++++............ .......
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~---~~~~~~~---------- 67 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRAR---WLDLLAG---------- 67 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhh---HHHHhcc----------
Confidence 35678899999999999999999999999998 589999999999876432110000000 0000000
Q ss_pred ChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.+............++.++|. .++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 68 --~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 68 --AEELAAAFVRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred --hHHHHHHHHHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 000000000123345778886 568899999999999999999999999999988999999999986
No 139
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.32 E-value=7.7e-12 Score=123.31 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=143.4
Q ss_pred CccCCcCEEEEEcCCCcEEEEEehhHHHHHHHhccC----CCCcccccc-------------------------------
Q 017586 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSK------------------------------- 45 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~----~~~~~~v~d------------------------------- 45 (369)
|.+++++.+||+|++|+++|++|..|+.+.+..... .....++.+
T Consensus 94 m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~ 173 (546)
T PRK14869 94 MDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPE 173 (546)
T ss_pred HHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHH
Confidence 567899999999988999999999999876654221 111112221
Q ss_pred ----ccccC-CeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 017586 46 ----VMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (369)
Q Consensus 46 ----im~~~-~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
.|.+. ++.+.... +....+.+.++..+.|+.+..+. .++++. ++ .
T Consensus 174 ~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~-----~~v~~l---------------------a~-~ 223 (546)
T PRK14869 174 SLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVS-----EDVLEL---------------------AK-E 223 (546)
T ss_pred HHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCC-----HHHHHH---------------------HH-h
Confidence 12222 22222222 22224556666666665432210 011100 00 0
Q ss_pred cCCC-CCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHH
Q 017586 121 WGTS-ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (369)
Q Consensus 121 ~g~~-~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~ 198 (369)
.+.. +..+.+.+..........+++++|+. +++.++++++++.++.+.|.+++++.+||+| +|+++|++|.+|++.
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~- 301 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS- 301 (546)
T ss_pred CCCeEEEecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc-
Confidence 1111 11222344444444556779999972 4689999999999999999999999999999 899999999999983
Q ss_pred HHhc---------------CCCcc-------ccccccccccCceee---cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEE
Q 017586 199 VISQ---------------NLPAD-------STLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253 (369)
Q Consensus 199 ~~~~---------------~~~~~-------~~~v~~~m~~~~~~v---~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~ 253 (369)
.... +.... .-++.++|+..++.+ +...+..-+.++|.+.++...|++. ..-+.
T Consensus 302 ~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~ 380 (546)
T PRK14869 302 PVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLA 380 (546)
T ss_pred cccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHH
Confidence 2221 00000 113456676665544 4566777888999999988888776 45688
Q ss_pred EEEehhHHHH
Q 017586 254 DVVDVIHITH 263 (369)
Q Consensus 254 Givt~~Di~~ 263 (369)
||+|-++.++
T Consensus 381 gIlsDT~~f~ 390 (546)
T PRK14869 381 AILSDTLLFK 390 (546)
T ss_pred HHHHHhcCcc
Confidence 8887777665
No 140
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=5.9e-11 Score=91.14 Aligned_cols=105 Identities=28% Similarity=0.412 Sum_probs=88.1
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.++++.|.++++..+||++ +|+++|+++..++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------------------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence 5778899999999999999999999999998 58999999999987541100
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
..++.++|. .++.++++++++.++++.|.+.+...+||++ +|++.|++|..|++
T Consensus 54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 012445554 4688899999999999999999999999998 78999999999985
No 141
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=3e-11 Score=93.35 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=88.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++++++++.+++..|.+++++.+||++ +++++|+++..++++.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence 456789999999999999999999999998 68999999999987542110
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....++.++|. ..+.++++++++.++++.|.+.+.+.+||++ +++++|++|.+|++
T Consensus 54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 001123566665 4578899999999999999999999999998 78999999999986
No 142
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.31 E-value=4.9e-11 Score=91.65 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=88.9
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++++++++++++.++++.|.+.+++++||+++++++|+++..++.+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------------- 51 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEG----------------------------- 51 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcC-----------------------------
Confidence 367889999999999999999999999999889999999999987541100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....++.++|. .++.++.+++++.++++.|.+.+.+.+||++ +++++|++|..|++
T Consensus 52 ---------~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 52 ---------REATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred ---------cccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 000012445555 5688999999999999999999999999999 69999999999996
No 143
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.31 E-value=6.8e-11 Score=90.51 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=87.8
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.+++..|.++++..+||++ +++++|+++..++.....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 4567899999999999999999999999998 589999999999865310
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
...++.++|. ..+.++++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 0112455665 4688899999999999999999999999998 78999999999986
No 144
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.30 E-value=1.9e-11 Score=121.06 Aligned_cols=122 Identities=12% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 017586 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 38 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
+...+++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++..|+.+.....
T Consensus 444 L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~----------------- 506 (574)
T PRK01862 444 LRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK----------------- 506 (574)
T ss_pred HhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-----------------
Confidence 456789999999999999999999999999999999999998 68999999999987632110
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-C--CEEEEEeehH
Q 017586 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSK 193 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~ 193 (369)
+.....++.++|. +++.++++++++.++++.|.+++.+.+||+| + ++++|++|.+
T Consensus 507 --------------------~~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~ 564 (574)
T PRK01862 507 --------------------RDTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT 564 (574)
T ss_pred --------------------cccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence 0001124667776 5688999999999999999999999999998 4 4899999999
Q ss_pred HHHHH
Q 017586 194 DILMR 198 (369)
Q Consensus 194 dll~~ 198 (369)
|+++.
T Consensus 565 DIl~~ 569 (574)
T PRK01862 565 SLLDA 569 (574)
T ss_pred HHHHH
Confidence 99843
No 145
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.30 E-value=4.9e-11 Score=93.19 Aligned_cols=118 Identities=27% Similarity=0.386 Sum_probs=91.8
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.++++.|.++++..+||+++++++|+++..+++........ ... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~----------------------~~~-~- 57 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKAT----------------------TLD-I- 57 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccc----------------------ccc-c-
Confidence 5678999999999999999999999999998999999999998764211000 000 0
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
..........++.++|. .++.++++++++.+++..|.+.+.+.+||++ +|+++|++|..|++
T Consensus 58 ---~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 58 ---WELYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred ---hhhhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 00000112344667776 5688999999999999999999999999999 59999999999996
No 146
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=1e-10 Score=91.57 Aligned_cols=118 Identities=27% Similarity=0.300 Sum_probs=90.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
+++++++++++.++++.|.++++.++||+|+|+++|+++..++.+............ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~---------------------~~ 60 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGET---------------------EK 60 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccch---------------------HH
Confidence 567899999999999999999999999999899999999999876532211000000 00
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
+ . .....++.++|. .++..+++++++.++++.|.+++...+||++ +++++|+++..|++
T Consensus 61 ~----~--~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 61 D----L--ATLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred H----H--HHHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 0 0 000112556665 5688999999999999999999999999998 68999999999996
No 147
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=5.3e-11 Score=93.66 Aligned_cols=120 Identities=28% Similarity=0.372 Sum_probs=91.1
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
+++.++.+++++.+|++.|.++++..+||++ + ++++|+++..+++............. ...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~------------~~~----- 63 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIK------------TGN----- 63 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcccc------------ccc-----
Confidence 3567899999999999999999999999998 4 89999999999886432110000000 000
Q ss_pred ChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.......++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus 64 ---------~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 64 ---------GLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred ---------cchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 00011234666665 5689999999999999999999999999998 58999999999996
No 148
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=5.2e-11 Score=92.33 Aligned_cols=111 Identities=15% Similarity=0.249 Sum_probs=87.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++++++++.++++.|.+++++.+||+| +++++|+++..++++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~-------------------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL-------------------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence 567899999999999999999999999998 58999999999987652210000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
. ...+...++.++|. ..+.++.+++++.++++.|.+.+ .+||++ +++++|++|..|++
T Consensus 56 -~-----~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 56 -D-----LERLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred -h-----HHHHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence 0 00012345677776 46888999999999999998754 589998 79999999999986
No 149
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=5.3e-11 Score=94.77 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=95.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+++++++||+| +++++|+++..+++........... ..+......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~ 66 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF 66 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence 567899999999999999999999999998 6899999999998865321100000 000000000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.. ....+.+...++.++|. .++..+.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus 67 ~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 67 LD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred cc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 00 12233344446788887 568899999999999999999999999999989999999999996
No 150
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.29 E-value=1e-10 Score=90.72 Aligned_cols=110 Identities=26% Similarity=0.357 Sum_probs=93.8
Q ss_pred cccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC
Q 017586 45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (369)
Q Consensus 45 dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
++|.++++++.++.++.+|+..|.++++..+||.+.++++|+++.+|+++......
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~------------------------ 58 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG------------------------ 58 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccC------------------------
Confidence 44558899999999999999999999999999999889999999999987633210
Q ss_pred CCChhhHHHHHHHHhcCC-CccccccCCCceeEECCCCcHHHHHHHHHH-cCCcEEEEEe-CC-EEEEEeehHHH
Q 017586 125 ISGPNTFIETLRERMFRP-SLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI 195 (369)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~-~v~~im~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~V~~-~~-~~~Givt~~dl 195 (369)
... ++.++|. .++.++.++.++.++.+.|.+ ++++.+||++ ++ +++|++|..|+
T Consensus 59 ---------------~~~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 59 ---------------KRLLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred ---------------CccccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 000 4677776 468999999999999999999 6999999999 54 99999999997
No 151
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=7.1e-11 Score=90.15 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=87.5
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.+++.+.++.++++.|.+++...+||+++++++|+++..+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence 46778999999999999999888889999988999999999987631
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....+++++|. ..+.++.+++++.++++.|.+++...+||++ +|+++|+++..|++
T Consensus 49 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 49 ----------DPDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred ----------CccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 00113556665 4578899999999999999999999999998 78999999999996
No 152
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=4e-11 Score=94.65 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=88.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
.+.++++++++.+|++.|.++++..+||+| +|+++|+++..|+............ .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~ 59 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----------------------YR 59 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----------------------cc
Confidence 467899999999999999999999999998 6899999999998765221100000 00
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
........... ....+.|. .++.++++++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus 60 ~~~~~~~~~~~--~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 60 TITFKELSEKF--TDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred chhhhhhhhhc--cccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 00000000000 11223343 5688999999999999999999999999999 68999999999996
No 153
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.28 E-value=1.2e-10 Score=112.13 Aligned_cols=114 Identities=10% Similarity=0.158 Sum_probs=98.9
Q ss_pred ccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 017586 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (369)
Q Consensus 42 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
+.++.|..+++++++++++.+|+++|.+++++.+||+++ ++++|+++.+|+...
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~---------------------- 154 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV---------------------- 154 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc----------------------
Confidence 466788889999999999999999999999999999985 799999999997521
Q ss_pred HHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....+++++|++..+++++++++++.+++++|.+++...+||++ +++++|+||.+|++
T Consensus 155 --------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl 214 (495)
T PTZ00314 155 --------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK 214 (495)
T ss_pred --------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence 001345788898544799999999999999999999999999999 78999999999997
Q ss_pred H
Q 017586 197 M 197 (369)
Q Consensus 197 ~ 197 (369)
+
T Consensus 215 ~ 215 (495)
T PTZ00314 215 K 215 (495)
T ss_pred h
Confidence 3
No 154
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.28 E-value=4.7e-11 Score=92.18 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=89.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.++++.|.+++++.+||++ +++++|+++..++.+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 52 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP---------------------------- 52 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc----------------------------
Confidence 3567899999999999999999999999998 58999999999987541100
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeC--CEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Givt~~dll 196 (369)
......++.++|. .++.++++++++.++++.|.+.+.+.+||+++ ++++|+++.+|++
T Consensus 53 ---------~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 53 ---------SLYDLVVASDIMT--KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred ---------cccccEEHHHhcc--CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 0001134667776 56889999999999999999999999999986 8999999999986
No 155
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=6.4e-11 Score=91.76 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=85.8
Q ss_pred CCeEEeCCCcHHHHHHHHHhCC-CcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.+++++.++.++++.|.+++ .+.+||.++++++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK---------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence 5678899999999999998888 67778888899999999999875411000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCC--CcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....++.++|. .++.++.++ +++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 001123566665 457778776 7899999999999999999998 78999999999996
No 156
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=7.4e-11 Score=91.00 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=89.3
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.++++++++.+|++.|.+++++.+||+++|+++|+++..+++...... +
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~------ 52 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G------ 52 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c------
Confidence 356789999999999999999999999999889999999999976321100 0
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
......++.++|. ..+.++.+++++.++++.|.+.+.+++||++ +++++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0011123666776 4688899999999999999999999999998 68999999999996
No 157
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.28 E-value=7.2e-11 Score=90.79 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++++++++++.+|++.|.++++..+||++ + ++++|+++..++++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 567899999999999999999999999998 5 8999999999987642100
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....+.++|. ++.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 54 -----------~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 54 -----------EEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------CCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 00012333442 477899999999999999999999999999 69999999999986
No 158
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.28 E-value=4.5e-11 Score=105.19 Aligned_cols=135 Identities=16% Similarity=0.271 Sum_probs=110.7
Q ss_pred EEEehhHHHHHHHhccC-CCCccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHH
Q 017586 20 GILTDKDIATRVIAREL-NLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD 95 (369)
Q Consensus 20 Givt~~di~~~~~~~~~-~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~ 95 (369)
--||..-++.+.+...+ ..+=.+|+|+|+ ....++.+++++.+-.++-.+.+++++||+| ..+++|+++.+|++..
T Consensus 166 DTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~ 245 (432)
T COG4109 166 DTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK 245 (432)
T ss_pred cceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC
Confidence 35666666655554322 222358999998 5788999999999999999999999999999 6899999999997643
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCC
Q 017586 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~ 175 (369)
....++..+|+ ++++++.+.+++..+.+.|.-.++
T Consensus 246 -------------------------------------------~~~t~ieKVMt--knp~tv~~~tsVAsvaq~MiwE~i 280 (432)
T COG4109 246 -------------------------------------------KPSTTIEKVMT--KNPITVRAKTSVASVAQMMIWEGI 280 (432)
T ss_pred -------------------------------------------CCCccHHHHhc--cCCeeecccchHHHHHHHHHhccc
Confidence 22334666777 679999999999999999999999
Q ss_pred cEEEEEe-CCEEEEEeehHHHHHHH
Q 017586 176 SSAVVTV-ENKPRGILTSKDILMRV 199 (369)
Q Consensus 176 ~~~~V~~-~~~~~Givt~~dll~~~ 199 (369)
..+||++ +.+++|+||++|++..+
T Consensus 281 em~PVv~~n~~llGiitR~dvlk~l 305 (432)
T COG4109 281 EMLPVVDSNNTLLGIITRQDVLKSL 305 (432)
T ss_pred eeeeEEcCCceEEEEEEHHHHHHHH
Confidence 9999999 88999999999998443
No 159
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.4e-11 Score=93.94 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=85.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+|++.|.+++++.+||++ +|+++|+++..|+......+.... +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------------------~------ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQE------------------G------ 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHH------------------c------
Confidence 467899999999999999999999999998 689999999999875311000000 0
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEE----CCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v----~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dll 196 (369)
.......+++++|.+......+ .+++++.++++.|.+++.+.+||++ + ++++|+||.+|++
T Consensus 58 -------~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 58 -------GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred -------CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence 0001123366777531112233 3688999999999999999999999 5 7999999999996
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=2.6e-10 Score=109.77 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=97.2
Q ss_pred ccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 017586 44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (369)
Q Consensus 44 ~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
...|.++++++++++++.+|+++|.+++++.+||+|+ ++++|+|+..|+....
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----------------------- 159 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----------------------- 159 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----------------------
Confidence 3347789999999999999999999999999999985 7999999999975310
Q ss_pred hcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHH
Q 017586 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (369)
Q Consensus 120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~ 198 (369)
....++.++|++..+++++++++++.++++.|.+++...+||++ +++++|+||.+|+++.
T Consensus 160 -------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 160 -------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred -------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 11345788888544488999999999999999999999999998 8999999999999844
Q ss_pred H
Q 017586 199 V 199 (369)
Q Consensus 199 ~ 199 (369)
.
T Consensus 221 ~ 221 (505)
T PLN02274 221 K 221 (505)
T ss_pred h
Confidence 3
No 161
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.6e-11 Score=93.05 Aligned_cols=117 Identities=22% Similarity=0.339 Sum_probs=90.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+.+++.+||++ +|+++|+++..++++.......... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~------ 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG-----------------E------ 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc-----------------c------
Confidence 567899999999999999999999999998 5999999999998764221100000 0
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
. ..+.....++.++|. .++.++.+++++.++++.|.+.+.+.+||++ +++++|++|..|++
T Consensus 59 -~----~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 59 -E----SLTKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred -c----ccccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 0 001112334666775 5688999999999999999999999999998 58999999999996
No 162
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=8.6e-11 Score=90.51 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=88.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.++++..+||++ +++++|+++..++++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence 567899999999999999999999999998 59999999999987642110
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.....++.++|. .++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 53 ---------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred ---------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 001123556665 4688999999999999999998999999998 69999999999986
No 163
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.28 E-value=2.1e-11 Score=94.14 Aligned_cols=93 Identities=53% Similarity=0.763 Sum_probs=79.3
Q ss_pred CccCCcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-
Q 017586 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE- 79 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd- 79 (369)
|.+++.+.+||+++ ++++|++|..|+++++...+......++.++|.+++.++.+++++.++++.|.+++..++||++
T Consensus 19 ~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 19 MREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC
Confidence 34667889999997 9999999999998666654433323689999998899999999999999999999999999998
Q ss_pred CCeEEEEEehHHHHH
Q 017586 80 NGEVIALLDIAKCLY 94 (369)
Q Consensus 80 ~~~~vGiv~~~dil~ 94 (369)
+++++|+++..+++.
T Consensus 98 ~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 98 SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCEEEEEEHHHhcc
Confidence 599999999998763
No 164
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.27 E-value=5.7e-11 Score=94.65 Aligned_cols=98 Identities=30% Similarity=0.301 Sum_probs=78.6
Q ss_pred ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCcc----------cccccccc------
Q 017586 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----------STLVEKVM------ 215 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~----------~~~v~~~m------ 215 (369)
++.++.+++++.+|++.|.+.+++.+||+| +++++|++|..|+++.......... ...+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 478899999999999999999999999999 7999999999999844432221100 01133454
Q ss_pred ---ccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCC
Q 017586 216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250 (369)
Q Consensus 216 ---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g 250 (369)
..++.++++++++.+|++.|.+++.+.+||+|+++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 46789999999999999999999999999999654
No 165
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.2e-10 Score=92.17 Aligned_cols=121 Identities=30% Similarity=0.362 Sum_probs=90.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+|++.|.+.+++.+||++ +++++|+++..++..............
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~---------------------- 59 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTG---------------------- 59 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchh----------------------
Confidence 567889999999999999999999999998 589999999999876422110000000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dll 196 (369)
.... ........++.++|. .+++++++++++.++++.|.+.+...+||++ +++++|+||.+|++
T Consensus 60 -~~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 60 -DRSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred -hhhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 0000 001122334677776 5688999999999999999999999999985 48999999999986
No 166
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.4e-10 Score=93.71 Aligned_cols=140 Identities=18% Similarity=0.234 Sum_probs=94.2
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAA-EKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.++++.|.++++..+||+++++++|+++..++++.......... .............+ .+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 75 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR-----EFIN 75 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch-----heee
Confidence 35778999999999999999999999999988999999999998765321110000 00000000000000 0000
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
......... .....++.++|. .++.++++++++.+++..|.+.+.+.+||++.++++|+++.+|++
T Consensus 76 ~~~~~~~~~-~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 76 WEETKRALT-DAGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred hHHHHHHHH-HHhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 001111111 122345777886 568899999999999999999999999999888999999999986
No 167
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.26 E-value=7.1e-11 Score=112.95 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=98.0
Q ss_pred ccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 017586 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (369)
Q Consensus 42 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
++.+.|.++++++++++++.+++++|.+++++++||+|+ ++++|+++.+|++...
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 467788889999999999999999999999999999984 5999999999986320
Q ss_pred HHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....+++++|.+ .+++++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 012346777763 3689999999999999999999999999999 89999999999998
Q ss_pred HH
Q 017586 197 MR 198 (369)
Q Consensus 197 ~~ 198 (369)
+.
T Consensus 198 ~~ 199 (450)
T TIGR01302 198 KR 199 (450)
T ss_pred hc
Confidence 43
No 168
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.25 E-value=1.6e-10 Score=89.47 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=84.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCC
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 125 (369)
++.++.+++++.++++.|.++++..+||+|+ ++++|+++..++... .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~--~--------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL--T--------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh--h---------------------------
Confidence 5678899999999999999999999999984 899999998887532 0
Q ss_pred CChhhHHHHHHHHhcCCCccccccCCCceeEE--CCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v--~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....+++++|.+ ...++ ++++++.++++.|.+++...+||++ +++++|++|.+|++
T Consensus 54 -------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 -------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 001235667763 34455 4599999999999999999999998 78999999999986
No 169
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.24 E-value=1.4e-10 Score=88.38 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=84.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCC
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 125 (369)
....+.+++++.++.+.|.+++++.+||+++ ++++|+++..++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~---------------------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK---------------------------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence 4567899999999999999999999999975 89999999999865410
Q ss_pred CChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
. +|. .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 55 -----------~---------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 55 -----------N---------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred -----------H---------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 0 444 468899999999999999999999999999989999999999996
No 170
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.24 E-value=2e-10 Score=89.78 Aligned_cols=117 Identities=26% Similarity=0.371 Sum_probs=90.3
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.+++++.+||+| +++++|+++..++.......+....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------ 57 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS------------------------ 57 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch------------------------
Confidence 567889999999999999999999999998 5999999999998654211100000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.... ......++.++|. ..+.++++++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus 58 ---~~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 58 ---EHEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred ---hhhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 0000 0122334666776 468889999999999999999999999999889999999999986
No 171
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.3e-10 Score=90.94 Aligned_cols=117 Identities=22% Similarity=0.392 Sum_probs=90.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+++++.+||+| +|+++|+++..+++........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~--------------------------~ 55 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS--------------------------V 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc--------------------------c
Confidence 567899999999999999999999999998 5999999999998754110000 0
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.. ..........++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 56 ~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 56 ED--QQRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred cc--hhhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 00 00000112334566675 5688999999999999999999999999998 68999999999986
No 172
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.23 E-value=6.9e-11 Score=91.27 Aligned_cols=92 Identities=36% Similarity=0.569 Sum_probs=79.0
Q ss_pred ccCCcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-C
Q 017586 2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N 80 (369)
Q Consensus 2 ~~~~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~ 80 (369)
.+.+...+||+|++|+++|+++..++.+ .+.........++.++|.+++.++.+++++.++++.|.+++...+||++ +
T Consensus 21 ~~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 99 (114)
T cd04604 21 SRKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN 99 (114)
T ss_pred HhcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 3456788999998899999999999984 4444434445689999998999999999999999999999999999998 7
Q ss_pred CeEEEEEehHHHHH
Q 017586 81 GEVIALLDIAKCLY 94 (369)
Q Consensus 81 ~~~vGiv~~~dil~ 94 (369)
++++|+++..++++
T Consensus 100 ~~~iG~it~~di~~ 113 (114)
T cd04604 100 GRPVGVLHIHDLLR 113 (114)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999864
No 173
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.22 E-value=7.4e-11 Score=105.89 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=94.1
Q ss_pred cccccccccC-CeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 017586 41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 41 ~~v~dim~~~-~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
++++++|.++ +.++.+++++.++++.|.+.++..+||+| +|+++|+++..|+.+....
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 6789999988 89999999999999999999999999998 6999999999998753110
Q ss_pred HhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEee
Q 017586 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 191 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt 191 (369)
......+++++|. .++.++.+++++.++++.|.+.+...+||++ +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 0011234777886 5688999999999999999999999999998 689999985
No 174
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.20 E-value=1.8e-10 Score=88.27 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=84.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.++++.|.++++..+||+| +|+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 4677899999999999999999999999998 58999999988865310
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECC-CCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....++.++|. ..+..+.+ ++++.++++.|.+.+.+.+||++ +++++|++|.+|++
T Consensus 51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 01123556665 33455555 99999999999999999999998 79999999999986
No 175
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=1.6e-10 Score=88.71 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=81.1
Q ss_pred EeCCCcHHHHHHHHHhCC-----CcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 54 VLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 54 v~~~~~l~ea~~~m~~~~-----~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++++++.++++.|.+++ +..+||+| +++++|+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~-------------------------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------------------------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence 578899999999998877 47899998 6899999998887531
Q ss_pred hhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....+++++|. .++.++.+++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus 50 -----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 50 -----------DPDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred -----------CCcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 00112455554 4588999999999999999999999999998 78999999999997
No 176
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=5.3e-10 Score=85.22 Aligned_cols=102 Identities=26% Similarity=0.353 Sum_probs=84.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+++..|.+.++..+||++ +++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 467889999999999999999999999998 58999999998876420
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
....+.++|. .++.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0001334444 458889999999999999999999999999978999999999986
No 177
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.18 E-value=4.5e-10 Score=85.99 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=83.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.++++.|.+++++.+||+++++++|+++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~---------------------------- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA---------------------------- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence 4678899999999999999999999999988999999999998765221000
Q ss_pred hHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....++.++|. .++.++++++++.++++.|.+ .. .+||++ +++++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence 00123555665 467889999999999999987 33 467777 79999999999996
No 178
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.18 E-value=4.1e-10 Score=100.26 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=105.1
Q ss_pred ccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhH
Q 017586 34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKA 109 (369)
Q Consensus 34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~~ 109 (369)
.-+++++++|+|+|.+ ++..++.+++..+.++.+....+.++|+..+ +.++|++..+++++...++-+
T Consensus 193 gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------- 264 (423)
T COG4536 193 GVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------- 264 (423)
T ss_pred cccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc--------
Confidence 4458899999999985 6789999999999999999999999999963 679999999999987443210
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEE
Q 017586 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (369)
Q Consensus 110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~G 188 (369)
+.+..+..+. .+++++++++++.+-+..|.+++-+-..|+| .|.+.|
T Consensus 265 -----------------------------~~k~d~~~~a---~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~G 312 (423)
T COG4536 265 -----------------------------FTKEDILRAA---DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQG 312 (423)
T ss_pred -----------------------------ccHhHHHHHh---cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEe
Confidence 0000011111 4599999999999999999999888889999 899999
Q ss_pred EeehHHHHHHHHhcC
Q 017586 189 ILTSKDILMRVISQN 203 (369)
Q Consensus 189 ivt~~dll~~~~~~~ 203 (369)
++|..|+++......
T Consensus 313 LVTLEDIlEEIVGdf 327 (423)
T COG4536 313 LVTLEDILEEIVGDF 327 (423)
T ss_pred eeeHHHHHHHHhccc
Confidence 999999997766543
No 179
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.18 E-value=6.3e-11 Score=79.54 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=52.8
Q ss_pred cccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHH
Q 017586 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 211 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~ 266 (369)
++++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999764
No 180
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.17 E-value=3.4e-10 Score=109.34 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=96.1
Q ss_pred CCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 017586 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 38 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
+...++.++|.+++.++.+++++.++++.|.+++++.+||+| +++++|+|+..|+++.....
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 394 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG----------------- 394 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence 556789999999999999999999999999999999999998 58999999999987642210
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
......++.++|. .++.++++++++.++++.|.+++ ..+|.++++++|+||.+|++
T Consensus 395 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll 450 (454)
T TIGR01137 395 --------------------KANPDDAVSKVMS--KKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL 450 (454)
T ss_pred --------------------CCCcCCCHHHhcC--CCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence 0011224677776 56889999999999999998753 34555589999999999998
Q ss_pred H
Q 017586 197 M 197 (369)
Q Consensus 197 ~ 197 (369)
+
T Consensus 451 ~ 451 (454)
T TIGR01137 451 S 451 (454)
T ss_pred H
Confidence 3
No 181
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.17 E-value=2.5e-10 Score=107.37 Aligned_cols=116 Identities=19% Similarity=0.292 Sum_probs=103.5
Q ss_pred CCCccccccCCCceeEECCCCcHHHHHHHHHHc-----CCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017586 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (369)
Q Consensus 141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~ 214 (369)
..+++.+|+ .+.++++++.|+.+++..+++. ....+.|+| ++++.|+++.++++ ...++.++.++
T Consensus 131 e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~i 201 (451)
T COG2239 131 EDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKDL 201 (451)
T ss_pred hhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHHH
Confidence 456889999 7899999999999999999853 466788999 78899999999997 12236789999
Q ss_pred cccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHH
Q 017586 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~ 265 (369)
|.+.++++++++..+++.+.|.+++.-.+||||++|+++|+||..|++..+
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765
No 182
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=1.2e-09 Score=84.96 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCC-CcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|...+ +..+||+++|+++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~---------------------------- 53 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY---------------------------- 53 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence 4567899999999999998887 89999998899999999999875421100
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCc---EEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~~V~~-~~~~~Givt~~dll 196 (369)
........++.++|. .++..+++++++.+++..|.+.+.. ..||++ +|+++|++|..|++
T Consensus 54 ------~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 54 ------GRALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred ------hHHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 000112334777786 5688999999999999999887753 346666 89999999999986
No 183
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.12 E-value=1.8e-09 Score=82.55 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=87.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.++++..+||++ +++++|+++..+++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-------------------------- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence 467889999999999999999999999998 58999999999988652211000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
....+.++|. .++..+++++++.++++.|.+.+.+.+||++ +++++|+++..|++
T Consensus 56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 0000334444 4688899999999999999999999999999 69999999999986
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.99 E-value=2.6e-08 Score=92.45 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=91.5
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
.....++.+..++++.|...+...+.|++ ++++.|.++.+++. .+.... ..+.+.+.....++++++++.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRETV 325 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHHH
Confidence 34566777899999999998999999998 88999999999985 444332 246777777788999999999999
Q ss_pred HHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHH
Q 017586 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~ 267 (369)
..|.+++.. +||+|++|+++|+||+.++++++..
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 999999988 9999999999999999999987754
No 185
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.96 E-value=8.2e-09 Score=82.20 Aligned_cols=114 Identities=15% Similarity=-0.011 Sum_probs=77.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCCh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+|++.|.++++..+||+| +|+++|+++..|+++......... ...... -++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~---~~~~~~-------~~~------ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTR---VQPEDE-------TKQ------ 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccc---cccchh-------hcc------
Confidence 567899999999999999999999999998 699999999999887633210000 000000 000
Q ss_pred hhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe
Q 017586 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 182 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 182 (369)
.......+.+....+.++|. .+++++.+++++.+|++.|.+++++.+||++
T Consensus 66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 00000111111111233343 4688999999999999999999999999998
No 186
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.96 E-value=2.5e-09 Score=71.66 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=50.7
Q ss_pred cccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHHHH
Q 017586 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA 96 (369)
Q Consensus 43 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~ 96 (369)
|+++|+++++++++++++.++++.|.+++++++||+| +++++|+++.+|+++..
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999999999999999999999999999999997 79999999999998763
No 187
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.95 E-value=4.7e-09 Score=98.84 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=102.9
Q ss_pred HHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHh-----CCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHH
Q 017586 30 RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERA 103 (369)
Q Consensus 30 ~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~-----~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~ 103 (369)
..+.......+-+++.+|+.+.++++++.|+.+++..+++ ..+..+.|+| ++++.|+++.++++..
T Consensus 121 ~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a-------- 192 (451)
T COG2239 121 ARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA-------- 192 (451)
T ss_pred HHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC--------
Confidence 3344445677789999999999999999999999999985 3467889999 6889999999998743
Q ss_pred HHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-
Q 017586 104 AEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV- 182 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~- 182 (369)
+. ...++++|. +.++++.++++.+++++.+.+++.-.+||+|
T Consensus 193 --------------------------~~---------~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 193 --------------------------EP---------DELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred --------------------------Cc---------HhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 00 112566776 4589999999999999999999999999999
Q ss_pred CCEEEEEeehHHHH
Q 017586 183 ENKPRGILTSKDIL 196 (369)
Q Consensus 183 ~~~~~Givt~~dll 196 (369)
+++++|++|..|++
T Consensus 236 ~~~LiG~itiDDii 249 (451)
T COG2239 236 DNRLIGIITIDDII 249 (451)
T ss_pred CCceeeeeeHHHHH
Confidence 88999999999998
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=7.7e-08 Score=90.42 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=89.1
Q ss_pred ECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHh
Q 017586 157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM 235 (369)
Q Consensus 157 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~ 235 (369)
..++.+..+++..|...+.+.++|+| ++++.|+++..++. +.... ...+.+.+.....++++++++.+++..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPLAVDAQTPLSELLSHV 363 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCceeCCCCCHHHHHHHH
Confidence 45677899999999999999999999 89999999999996 44332 2246667777788999999999999999
Q ss_pred HhCCCcEeeEEcCCCcEEEEEehhHHHHHHHH
Q 017586 236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 236 ~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~ 267 (369)
.++... +||+|++|+++|+||..++++++.+
T Consensus 364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred HhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 998776 9999999999999999999997643
No 189
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.2e-08 Score=96.41 Aligned_cols=125 Identities=13% Similarity=0.200 Sum_probs=104.8
Q ss_pred HhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe---C---CEEEEEeehHHHHHHHHhcCCCc-----
Q 017586 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA----- 206 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~---~~~~Givt~~dll~~~~~~~~~~----- 206 (369)
.|.+.+++++|. +++++++..+.+....+.+....++.+||+| . +++.|+|-+..++ .++.+....
T Consensus 578 ~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 578 YMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRS 654 (762)
T ss_pred HhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcc
Confidence 455667899999 6899999999999999999999999999998 2 4688999999986 443321100
Q ss_pred ---------------------------------cccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEE
Q 017586 207 ---------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253 (369)
Q Consensus 207 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~ 253 (369)
...++..+|++.|++|++++++..++.+|++-+.+++.||+..++.+
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~ 734 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV 734 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence 02456678888999999999999999999999999999999999999
Q ss_pred EEEehhHHHHHH
Q 017586 254 DVVDVIHITHAA 265 (369)
Q Consensus 254 Givt~~Di~~~~ 265 (369)
|++|+.|+..+-
T Consensus 735 gilTR~D~~~~~ 746 (762)
T KOG0474|consen 735 GILTRKDLARYR 746 (762)
T ss_pred EEEehhhhhhHH
Confidence 999999999654
No 190
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.77 E-value=1.4e-08 Score=84.92 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=102.7
Q ss_pred ccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhH
Q 017586 34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKA 109 (369)
Q Consensus 34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~ 109 (369)
...++.+++|.|+|.+ +.++++.+.++.+.+..+.+..++++||+. .+.+.|++..+|++..+...
T Consensus 60 Gvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~---------- 129 (293)
T COG4535 60 GVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD---------- 129 (293)
T ss_pred HHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC----------
Confidence 3346678899999985 678999999999999999999999999995 47899999999998762211
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEE
Q 017586 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (369)
Q Consensus 110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~G 188 (369)
.....++++.. +.+.++++-.+...++.++..+.+..+|+| -|.+.|
T Consensus 130 -----------------------------~~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG 177 (293)
T COG4535 130 -----------------------------AEPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG 177 (293)
T ss_pred -----------------------------cccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence 01112444444 488899999999999999999999999999 788999
Q ss_pred EeehHHHHHHHHh
Q 017586 189 ILTSKDILMRVIS 201 (369)
Q Consensus 189 ivt~~dll~~~~~ 201 (369)
+||..|++.....
T Consensus 178 LVTIEDiLEqIVG 190 (293)
T COG4535 178 LVTIEDILEQIVG 190 (293)
T ss_pred eEEHHHHHHHHhc
Confidence 9999999955543
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=2.9e-06 Score=79.89 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=104.8
Q ss_pred cCEEEEEcCCCcEEEEEehhHHHHH--------HHhccCCCCccccccccccCC---eEEeCCCcHHHHHHHHHhCCCcE
Q 017586 6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEETPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFRH 74 (369)
Q Consensus 6 ~~~~~V~d~~~~~~Givt~~di~~~--------~~~~~~~~~~~~v~dim~~~~---i~v~~~~~l~ea~~~m~~~~~~~ 74 (369)
.+.+.+.+ +|+++..-+..++... .+.......-.++.++|.+.+ +...++.+..+++..|..++...
T Consensus 232 ~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (400)
T PRK10070 232 GDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREY 310 (400)
T ss_pred CCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCce
Confidence 45666665 5777655566665421 121111111246777885433 23346678999999999999999
Q ss_pred eeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCc
Q 017586 75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153 (369)
Q Consensus 75 lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 153 (369)
++|+| ++++.|+++..++....- ....+.+.+. ..
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~ 346 (400)
T PRK10070 311 GYVIERGNKFVGAVSIDSLKTALT------------------------------------------QQQGLDAALI--DA 346 (400)
T ss_pred EEEEcCCCcEEEEEeHHHHHhhhh------------------------------------------cCCchhhhhc--cC
Confidence 99998 799999999988764310 0011333333 45
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHh
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS 201 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~ 201 (369)
..++++++++.+++..+.+.... +||+| +|+++|+|+..++++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 77899999999999999987766 99999 8999999999999854443
No 192
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.56 E-value=3.4e-06 Score=78.48 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=104.3
Q ss_pred cCEEEEEcCCCcEEEEEehhHHHHH--------HHhccCCCCccccccc---cccCCeEEeCCCcHHHHHHHHHhCCCcE
Q 017586 6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRH 74 (369)
Q Consensus 6 ~~~~~V~d~~~~~~Givt~~di~~~--------~~~~~~~~~~~~v~di---m~~~~i~v~~~~~l~ea~~~m~~~~~~~ 74 (369)
.+.+.+.+ +|+++..-|..++... .+............++ |........++.+..+++..|..++...
T Consensus 197 ~drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (363)
T TIGR01186 197 GDRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDS 275 (363)
T ss_pred CCEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCce
Confidence 46677775 6888887787877532 1111101111233333 3333345667778999999999999999
Q ss_pred eeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCc
Q 017586 75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153 (369)
Q Consensus 75 lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 153 (369)
+.|+| ++++.|.++..++..+.- . ...+.+.+. ..
T Consensus 276 ~~~~~~~~~~~g~~~~~~~~~~~~-~-----------------------------------------~~~~~~~~~--~~ 311 (363)
T TIGR01186 276 LYVVDRQNKLVGVVDVESIKQARK-K-----------------------------------------AQGLQDVLI--DD 311 (363)
T ss_pred EEEEcCCCCEEEEEeHHHHHHHhh-c-----------------------------------------CCchhhhhc--cC
Confidence 99998 799999999887654310 0 011333443 45
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHH
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~ 199 (369)
+.++++++++.+++..|.++++. +||++ +|+++|+||..+++..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 77899999999999999999998 99999 89999999999998443
No 193
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.46 E-value=3.1e-07 Score=87.12 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=103.2
Q ss_pred CCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC------CeEEEEEehHHHHHHHHHHHHHHH-Hh--hh
Q 017586 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAA-EK--GK 108 (369)
Q Consensus 38 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~------~~~vGiv~~~dil~~~~~~~~~~~-~~--~~ 108 (369)
..+++++|+|++++++++.-+.+....+.+.++.++++||+|+ +++.|++-...++.-...+..... .. ..
T Consensus 579 mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~ 658 (762)
T KOG0474|consen 579 MRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL 658 (762)
T ss_pred hhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence 3467899999999999999999999999999999999999973 367888866666544333221111 00 00
Q ss_pred H---HHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 017586 109 A---IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (369)
Q Consensus 109 ~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~ 184 (369)
+ ..+..+-.+ ......+..-.-.+.-.-..+..+|. +.+.++++++++..+..++++-+.+++.|+. ..
T Consensus 659 ~~~~~~~~~d~a~-----r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~ 731 (762)
T KOG0474|consen 659 PVRRKFTFRDFAK-----REPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTN 731 (762)
T ss_pred chhhcCCHHHhhh-----cCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCC
Confidence 0 000000000 01111111111111112234677887 5689999999999999999999999999998 67
Q ss_pred EEEEEeehHHHH
Q 017586 185 KPRGILTSKDIL 196 (369)
Q Consensus 185 ~~~Givt~~dll 196 (369)
+.+|++|++|+.
T Consensus 732 ~~~gilTR~D~~ 743 (762)
T KOG0474|consen 732 RVVGILTRKDLA 743 (762)
T ss_pred ceeEEEehhhhh
Confidence 789999999997
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=5.5e-06 Score=73.22 Aligned_cols=165 Identities=17% Similarity=0.252 Sum_probs=115.8
Q ss_pred ccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Q 017586 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 48 ~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
.+.++.+..+ +.||+++ =+++.++.+|+++-+=+..+++.. +
T Consensus 215 ~KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~-------------------------------P 256 (386)
T COG4175 215 KKTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLN-------------------------------P 256 (386)
T ss_pred CCeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcC-------------------------------c
Confidence 3456666555 8888776 246888899999999999998753 1
Q ss_pred hhhHHHHHHHHh---cCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcC
Q 017586 128 PNTFIETLRERM---FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN 203 (369)
Q Consensus 128 ~~~~~~~~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~ 203 (369)
.++|....-+.. .-.++.++|.+......-.+...-..++..+.......+.+++ .++.+|+++..+....
T Consensus 257 AndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----- 331 (386)
T COG4175 257 ANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA----- 331 (386)
T ss_pred cHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----
Confidence 233333333222 2234678887412222222333445677777777766666666 6779999999888511
Q ss_pred CCccccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHH
Q 017586 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 204 ~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~ 266 (369)
.+..++.+++.++++.+.+..+.+.+.. ++|+|++|+++|++++..+++++.
T Consensus 332 ----------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ----------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ----------cccccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHh
Confidence 3346778899999999999999988765 789999999999999999998764
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1e-06 Score=68.00 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=51.3
Q ss_pred cccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5688999889999999999999999999999999999999999999999999864
No 196
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.15 E-value=2.6e-05 Score=70.81 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=88.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC
Q 017586 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (369)
Q Consensus 49 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
.+++.+.|+.++.++++....+++..+||.++ .+++|+|+.+|+-..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~----------------------------- 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL----------------------------- 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence 46788999999999999999999999999963 689999998886321
Q ss_pred CCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
.-....+.++|++ +.++.+...++.++-+.+.+.+...+||++ +|+++.++++.||.
T Consensus 167 -------------~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 167 -------------EDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM 224 (503)
T ss_pred -------------hcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence 0112347888985 458899999999999999999999999999 89999999999996
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=4.8e-06 Score=64.17 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=49.6
Q ss_pred cccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHH
Q 017586 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL 93 (369)
Q Consensus 41 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil 93 (369)
.+++++|.+++.++++++++.++++.|.+++++.+||+| +++++|+++..++.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 679999999999999999999999999999999999998 68999999998875
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.07 E-value=1.4e-05 Score=50.47 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=42.6
Q ss_pred CceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
++.++++++++.+++..|.+.+.+.+||++++++++|+++..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 35678999999999999999999999999988999999999999864
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.93 E-value=0.00012 Score=70.15 Aligned_cols=110 Identities=11% Similarity=0.191 Sum_probs=87.8
Q ss_pred eeEECCC-CcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeehHHHHHHHHhcCCC----------------------cc
Q 017586 154 VVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----------------------AD 207 (369)
Q Consensus 154 ~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dll~~~~~~~~~----------------------~~ 207 (369)
...++.+ .++.+....|.+..++.+||+- ..+++|++.++|+...+...... ..
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 4555544 8999999999999999999875 57899999999997444421100 01
Q ss_pred ccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 208 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
....+++|...|.++...++.+.+++++++-+.+...|. ++|++.|+||+.|+++.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 234568888889999999999999999999999988764 58999999999999974
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00016 Score=69.29 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=89.5
Q ss_pred CeEEeCC-CcHHHHHHHHHhCCCcEeeEe-e--CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCC
Q 017586 51 PTFVLSD-TLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 51 ~i~v~~~-~~l~ea~~~m~~~~~~~lpVv-d--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
...++.+ .++.|...+|.++.++.+||+ + ..+++|++..+++.......-. ..+..+..... +.
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~-----------~q~~~~~~~~~-f~ 625 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARK-----------IQSFIVTTSIY-FN 625 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcc-----------ccccceecccc-cC
Confidence 5555544 899999999999999999999 3 4799999999998766431100 00000000000 00
Q ss_pred ChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH
Q 017586 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll 196 (369)
.+.+ ......-.....+++|. -.+.++...++.+.+++++++-+.+.+.|.++|++.|+||.+|++
T Consensus 626 ~~~~--~~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l 691 (696)
T KOG0475|consen 626 DPSP--SAVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL 691 (696)
T ss_pred CCCc--cccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence 0000 00011122334677887 468899999999999999999999999999999999999999998
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.71 E-value=0.00061 Score=63.88 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=73.4
Q ss_pred CccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCceee
Q 017586 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA 222 (369)
Q Consensus 143 ~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v 222 (369)
+++++|.+ ...+...... .+++. .+.+.+.|++. |+++..+.. .+..... ...+.+ +.....++
T Consensus 275 ~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~ 338 (382)
T TIGR03415 275 TARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVI 338 (382)
T ss_pred eHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCccc
Confidence 46778853 2222222222 44433 67888888876 888877764 4333111 224555 45678899
Q ss_pred cCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHH
Q 017586 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~ 266 (369)
++++++.+++..+.+.+.. ++|+|+ |+++|+|++.++++++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred CCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 9999999999999888765 888885 99999999999998764
No 202
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.50 E-value=0.0004 Score=43.53 Aligned_cols=43 Identities=35% Similarity=0.423 Sum_probs=39.6
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
+.++.+++++.++++.|.+.+.+.+||++ +++++|+++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~ 45 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDII 45 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHH
Confidence 56789999999999999999999999998 68999999999996
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.39 E-value=0.0028 Score=59.52 Aligned_cols=139 Identities=9% Similarity=0.037 Sum_probs=87.4
Q ss_pred cCEEEEEcCCCcEEEEEehhHHH--------HHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeE
Q 017586 6 VDALLLTDSNALLCGILTDKDIA--------TRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77 (369)
Q Consensus 6 ~~~~~V~d~~~~~~Givt~~di~--------~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpV 77 (369)
.+.+.+.+ +|+++-.-|..+++ +..........-.++.++|.+.......+.+ -++.. ++...+.|
T Consensus 232 ~DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~ 305 (382)
T TIGR03415 232 GNRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFT 305 (382)
T ss_pred CCEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEe
Confidence 45667775 67777777777664 2222222233446789999543333333333 44333 78889999
Q ss_pred eeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEE
Q 017586 78 VENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI 157 (369)
Q Consensus 78 vd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v 157 (369)
+|+ |+++..+....... .....+.+ +. .+..++
T Consensus 306 ~~~----~~~~~~~~~~~~~~----------------------------------------~~~~~~~~-~~--~~~~~~ 338 (382)
T TIGR03415 306 IDK----QVRRRDAKLPVQAW----------------------------------------AAEQEVES-LE--AAPTVI 338 (382)
T ss_pred ecc----ceecccchHhHhhc----------------------------------------ccccchhh-hc--ccCccc
Confidence 987 77775553321000 00111222 11 457789
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHH
Q 017586 158 SPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (369)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~ 198 (369)
++++++.+++..+.+.++. ++|+++|+++|+|+..+++..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHA 378 (382)
T ss_pred CCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHH
Confidence 9999999999988887765 777788999999999999843
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.0041 Score=61.16 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEeeC---CeEEEEEehHHHHHHHHHH
Q 017586 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIAR 99 (369)
Q Consensus 40 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~~~vGiv~~~dil~~~~~~ 99 (369)
.+.|+++|.+++..+..+.+..|.-+.+..+.++.+|++|+ --++|.|..+.+...+-.+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 46799999999999999999999999888877999999973 4699999988887665443
No 205
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=97.15 E-value=0.0011 Score=64.04 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=100.0
Q ss_pred HhcCCCccccccCCCceeEECCCCcHH-HHHHHHHHcCCcEEEEEe--C-CEEEEEeehHHHHHHHHhcCCCcccccccc
Q 017586 138 RMFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV--E-NKPRGILTSKDILMRVISQNLPADSTLVEK 213 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~-~~~~Givt~~dll~~~~~~~~~~~~~~v~~ 213 (369)
.+....++++|+|-.+++.+..+..+. +......+.+++++||++ . ..+.|.+....+ .+..........++..
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~ 277 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSE 277 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchh
Confidence 344456899999988888888888887 555555688999999998 2 334444444444 4443332333567888
Q ss_pred ccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHHHHHHHhcccCC
Q 017586 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVRNTAG 274 (369)
Q Consensus 214 ~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~~~~~~~~~~~~ 274 (369)
.+......+++++++.+.++.++..+.|++.|.. ...-+|+++..|+ ++...++.++.+
T Consensus 278 ~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~d 336 (498)
T KOG2118|consen 278 SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEED 336 (498)
T ss_pred hhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceeccccc
Confidence 8888999999999999999999999988877776 6778999999999 777666665543
No 206
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=96.47 E-value=0.0013 Score=47.20 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHhhcCCCCCCCcccccccccccccCCCCccc--ccCCCCCCCCCCCceeEEeeCCCC-ceeEEe
Q 017586 287 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT 350 (369)
Q Consensus 287 ~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~V~~~~g-~~~~~~ 350 (369)
..++.+.+..++++++|++|++...++++|..|+ .+.++.+. |+|.++++ ++.+++
T Consensus 18 ~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~--------~~V~~~~~~rI~~V~ 76 (81)
T PF03471_consen 18 DLNELLGLDLPEEDYDTLGGLILEQLGRIPEVGERVEIELENYE--------FEVLEMDGRRIRKVR 76 (81)
T ss_dssp HHHHHHTS-TTTTTTSBHHHHHHHHHTSS--TTSEEEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred HHHHHHCcCCCccchhhHHHHHHHHcCCCCCCCeEEEEEcCCEE--------EEEEEeeCCEEEEEE
Confidence 3445555566666789999999999999999999 45555777 99999964 444433
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.21 E-value=0.035 Score=48.30 Aligned_cols=98 Identities=19% Similarity=0.074 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHH--------HHHHhcCCC----ccccccccccccCc----eeecC
Q 017586 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLP----ADSTLVEKVMTPNP----ECATI 224 (369)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll--------~~~~~~~~~----~~~~~v~~~m~~~~----~~v~~ 224 (369)
..+.+|+++ .+++.|.++|+++-+=+..+++ ..++..... .....+.+.|.... -.+..
T Consensus 194 HDidEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (309)
T COG1125 194 HDIDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLE 268 (309)
T ss_pred cCHHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCcccc
Confidence 345666643 2467777888888888866655 334433311 11233444443211 23445
Q ss_pred CCCHHHHHHHhHhCCCcEeeEEcCCCcEEEEEehhHHHH
Q 017586 225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 225 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~Di~~ 263 (369)
.....+++..+...+...+||+|++|+++|.||..+++.
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 566677888899999999999999999999999999986
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.037 Score=49.61 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=94.5
Q ss_pred EEEEcCCCcEEEEEehhHHHH--------HHHhccCCCCcccccccccc--CCeEEeCCCcHHHHHHHHHhCCCcEeeEe
Q 017586 9 LLLTDSNALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVV 78 (369)
Q Consensus 9 ~~V~d~~~~~~Givt~~di~~--------~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVv 78 (369)
+.+. ++|+++-+=|..+|+. ..+.......-.++.++|.+ ..+.-.+...-..+++.+.+.....+.++
T Consensus 235 Iaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 313 (386)
T COG4175 235 IAIM-KDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAV 313 (386)
T ss_pred EEEe-cCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHH
Confidence 4444 4788998889888763 22333323334688999973 22233333444568888888877777777
Q ss_pred e-CCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEE
Q 017586 79 E-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI 157 (369)
Q Consensus 79 d-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v 157 (369)
+ +++.+|+++..+.... .+. +.+.++
T Consensus 314 ~~~~~~~g~v~~~~~~~~---------------------------------------------------~~~--~~~~~v 340 (386)
T COG4175 314 DRGNKFVGVVSIDSLVKA---------------------------------------------------ALI--DDVLTV 340 (386)
T ss_pred hccCceeeEEeccchhcc---------------------------------------------------ccc--cccccc
Confidence 6 6789999987665431 111 457889
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHH
Q 017586 158 SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (369)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~ 200 (369)
++++++.+.+..+.+... .++|+| +++++|+++...++ .++
T Consensus 341 ~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl-~aL 382 (386)
T COG4175 341 DADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELL-EAL 382 (386)
T ss_pred CccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHH-HHH
Confidence 999999999988887665 567777 89999999999998 444
No 209
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.36 E-value=0.019 Score=41.24 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.1
Q ss_pred eeEEeeCCCCceeEEecC-CCChHhHHHhhccc
Q 017586 335 FAFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE 366 (369)
Q Consensus 335 ~~~~V~~~~g~~~~~~~g-~~~~~~~~~~~~~~ 366 (369)
|+||+.+..|++|||+++ .-|+.+|+..|..+
T Consensus 1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R 33 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQR 33 (86)
T ss_pred CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 359999999999999998 89999999887653
No 210
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.47 E-value=0.44 Score=41.70 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=67.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChh
Q 017586 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
.++.+..+ +.||+++ -.++.|+++|+++-+=+..+++..-...+ ++..+|.+....
T Consensus 188 TivfVTHD--idEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~F----------------V~~f~g~~~~~~- 243 (309)
T COG1125 188 TIVFVTHD--IDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDF----------------VEDFFGESERGL- 243 (309)
T ss_pred EEEEEecC--HHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHH----------------HHHHhccccccc-
Confidence 44555444 7788776 34688889999999999888876421111 111111110000
Q ss_pred hHHHHHHHHhcCCCccccccCCC--ceeEECCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHH
Q 017586 130 TFIETLRERMFRPSLSTIIPEKS--KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll 196 (369)
..+...++.+.|.+.. +--.+.....-.+++..+...+...+||+| +|+++|.+|..+++
T Consensus 244 -------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~ 306 (309)
T COG1125 244 -------RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLL 306 (309)
T ss_pred -------cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHh
Confidence 0011112333333211 011123334445577777788999999999 89999999999997
No 211
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.45 E-value=0.37 Score=48.09 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=57.5
Q ss_pred ccccccccccCceeecCCCCHHHHHHHhHhCCCcEeeEEcC--CCcEEEEEehhHHHHHHHHHhcccC
Q 017586 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVATVRNTA 273 (369)
Q Consensus 208 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--~g~~~Givt~~Di~~~~~~~~~~~~ 273 (369)
...++++|.+++.++..+++..|..+.+.....+.+|+||+ +.-++|.|.+..+...+-.++.++.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~ 654 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP 654 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence 45789999999999999999999999999888999999984 4569999999999988877776543
No 212
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=83.19 E-value=0.98 Score=44.07 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=82.2
Q ss_pred ccCCCCcccccccccc--CCeEEeCCCcHH-HHHHHHHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhh
Q 017586 34 RELNLEETPVSKVMTR--NPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGK 108 (369)
Q Consensus 34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~-ea~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~ 108 (369)
....+.+..++++|++ .+..++.+..+. +......+++++++||.+. ...+|.+=....+..
T Consensus 197 g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~------------- 263 (498)
T KOG2118|consen 197 GALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRL------------- 263 (498)
T ss_pred hhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhh-------------
Confidence 3345667889999985 566677777776 5666667999999999973 333333111111111
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEE
Q 017586 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRG 188 (369)
Q Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~G 188 (369)
... ...+...+++..+. .....++.++++.+.++.+.+.+.+.+.|.+...-.+
T Consensus 264 -----------------------~~~-~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~ 317 (498)
T KOG2118|consen 264 -----------------------LQV-EVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIF 317 (498)
T ss_pred -----------------------hcc-ccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCccee
Confidence 000 00122334555555 4677889999999999999987777777776666789
Q ss_pred EeehHHHHHHHH
Q 017586 189 ILTSKDILMRVI 200 (369)
Q Consensus 189 ivt~~dll~~~~ 200 (369)
+++..|+ ....
T Consensus 318 ~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 318 VLTLEDL-EEVV 328 (498)
T ss_pred eEeccch-hhhc
Confidence 9999987 4444
No 213
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=72.64 E-value=10 Score=35.80 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=81.2
Q ss_pred CcEEEEEehhHHHHHHHhccCCCCccccccccccCCeEEeCCCcHHHHHHHHHhCCCcEeeEee-CCeEEEEEehHHHHH
Q 017586 16 ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLY 94 (369)
Q Consensus 16 ~~~~Givt~~di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~ 94 (369)
.+=+|++|..-+ ++.+. .++ .+-+++|.=++..+.+-..+.+|+..|.+. .+..+| .|+ +..|-..
T Consensus 233 ~~kVaiITtDtY--RIGA~-EQL--k~Ya~im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGr-----s~~D~~~ 299 (407)
T COG1419 233 KKKVAIITTDTY--RIGAV-EQL--KTYADIMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGR-----SQYDKEK 299 (407)
T ss_pred CcceEEEEeccc--hhhHH-HHH--HHHHHHhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCC-----CccCHHH
Confidence 345788887764 33322 133 256788887888888888889998888876 455667 565 4344322
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhcCCCccccccCCCceeEECCCCcHHHHHHHHHHcC
Q 017586 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~~~~~~ 174 (369)
. +.+.. +......++.++-.+.-.....+..+.+.+...++..++ +.-+++++++...+..|.+.+
T Consensus 300 i--~el~~-------~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I-----~TKlDET~s~G~~~s~~~e~~ 365 (407)
T COG1419 300 I--EELKE-------LIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLI-----FTKLDETTSLGNLFSLMYETR 365 (407)
T ss_pred H--HHHHH-------HHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeE-----EEcccccCchhHHHHHHHHhC
Confidence 1 11111 111112222223222233334445555555555555444 445788899999999999887
Q ss_pred CcEEEEEe
Q 017586 175 LSSAVVTV 182 (369)
Q Consensus 175 ~~~~~V~~ 182 (369)
.....|.+
T Consensus 366 ~PV~YvT~ 373 (407)
T COG1419 366 LPVSYVTN 373 (407)
T ss_pred CCeEEEeC
Confidence 77666666
No 214
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=63.06 E-value=24 Score=35.90 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCc----cc-----ccccc-ccccCceeecCCCCHHHH
Q 017586 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA----DS-----TLVEK-VMTPNPECATIDTPIVDA 231 (369)
Q Consensus 163 l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~----~~-----~~v~~-~m~~~~~~v~~~~~l~~a 231 (369)
+..+.+.+...+ ..++++| +|.++.+....+++..+...+... .+ ..+.- +....++.|.......+.
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 334444444445 5778888 899999999888864433212211 11 11111 112456666666655554
Q ss_pred HHHhHhCCCcEeeEEcCCCcEEEEEeh
Q 017586 232 LHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~ 258 (369)
+.. -.....||.|.+|+++|+|+.
T Consensus 140 ~~~---~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 140 LHN---WAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred ccC---ceEEeeEEEcCCCCEEEEEEE
Confidence 433 345678999999999999963
No 215
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=54.48 E-value=28 Score=24.43 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=22.5
Q ss_pred CcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCC
Q 017586 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~ 38 (369)
+...+-|+|++|..+|+++..+-++..-..++++
T Consensus 11 ~~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDL 44 (76)
T PF05198_consen 11 RAPEVRLIDEDGEQLGVMSLREALRLAKEKGLDL 44 (76)
T ss_dssp --SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EE
T ss_pred CCCEEEEECCCCcEeceEEHHHHHHHHHHcCCcE
Confidence 3456888899999999999999876655554443
No 216
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=54.37 E-value=24 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=19.0
Q ss_pred CcEeeEEcCCCcEEEEEehhHHHHH
Q 017586 240 FLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 240 ~~~l~Vvd~~g~~~Givt~~Di~~~ 264 (369)
...+-|+|++|+.+|+++..+-++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4567789999999999999998873
No 217
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=53.67 E-value=24 Score=35.96 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=51.6
Q ss_pred CEEEEEcCCCcEEEEEehhHHHHHHHhccCCCCcccccccc----------ccCCeEEeCCCcHHHHHHHHHhCCCcEee
Q 017586 7 DALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVM----------TRNPTFVLSDTLAVEALQKMVQGKFRHLP 76 (369)
Q Consensus 7 ~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~dim----------~~~~i~v~~~~~l~ea~~~m~~~~~~~lp 76 (369)
..+++.|.+|.++.+....++.+.+-..+..+...-.++.+ ...++.+...+-..+. +........|
T Consensus 73 ~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~---~~~~~c~aaP 149 (638)
T PRK11388 73 CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA---LHNWAFCATP 149 (638)
T ss_pred cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh---ccCceEEeeE
Confidence 67899999999999999999876554323222111112211 2355555555544443 4445677899
Q ss_pred Eee-CCeEEEEEeh
Q 017586 77 VVE-NGEVIALLDI 89 (369)
Q Consensus 77 Vvd-~~~~vGiv~~ 89 (369)
|.| +|+++|++++
T Consensus 150 I~d~~G~liGvl~l 163 (638)
T PRK11388 150 VFDSKGRLTGTIAL 163 (638)
T ss_pred EEcCCCCEEEEEEE
Confidence 998 6999999963
No 218
>CHL00199 infC translation initiation factor 3; Provisional
Probab=41.91 E-value=36 Score=28.34 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=26.3
Q ss_pred CcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCC
Q 017586 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~ 38 (369)
+.+.+-|+|++|..+|+++..+.++.+...++++
T Consensus 23 ~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDL 56 (182)
T CHL00199 23 RFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDL 56 (182)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCE
Confidence 3566888999999999999999886665555444
No 219
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=39.11 E-value=32 Score=26.12 Aligned_cols=17 Identities=53% Similarity=0.827 Sum_probs=13.0
Q ss_pred EeeEEcCCCcEEEEEeh
Q 017586 242 HLPVVDRDGDVVDVVDV 258 (369)
Q Consensus 242 ~l~Vvd~~g~~~Givt~ 258 (369)
..||.|.+|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 47999989999999964
No 220
>PF14044 NETI: NETI protein
Probab=36.22 E-value=46 Score=21.71 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred eeecCCCCHHHHHHHhHhCCCcEeeE
Q 017586 220 ECATIDTPIVDALHIMHDGKFLHLPV 245 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~V 245 (369)
+.|.++.|+.+.+..|.+.++ .||
T Consensus 2 FeV~enETI~~CL~RM~~eGY--~Pv 25 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGY--MPV 25 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCC--Cce
Confidence 357899999999999999987 555
No 221
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=36.13 E-value=44 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.4
Q ss_pred CcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCC
Q 017586 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~ 38 (369)
+...+-|+|++|...|+++..+-++.+-..++++
T Consensus 6 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDL 39 (165)
T TIGR00168 6 RFNEVRLIDENGEQLGIVSREEALEIAEEAGLDL 39 (165)
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHHHHcCCcE
Confidence 4567889999999999999999886665554443
No 222
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.55 E-value=84 Score=30.81 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhCCCcEeeEeeCCeEEEEEehHHHHHHHHH
Q 017586 59 LAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98 (369)
Q Consensus 59 ~l~ea~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~ 98 (369)
.+..+.+...+.|=.-++|++++++.|++..+|+++..+.
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHH
Confidence 3666667777788889999999999999999999887553
No 223
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=31.11 E-value=80 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHH
Q 017586 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (369)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~ 198 (369)
..+..+.+...+.|-..++|++++++.|+|..+|++..
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~ 450 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcch
Confidence 34667777777888888999999999999999999843
No 224
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=30.01 E-value=1.7e+02 Score=21.75 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCC---HHHHHHHhH
Q 017586 161 DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP---IVDALHIMH 236 (369)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~---l~~a~~~~~ 236 (369)
.+..+|++...+.+-.-++... ++.. .-+.+.+..+. +..+.+.++...+.+..+.+ ..+....+.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~----~c~~~~~~vl~------~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~ 73 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEF----DSQVLNRDLWS------NESVKEFIRENFIFWQCDIDSSEGQRFLQSYK 73 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcc----hHHHHHHHHcC------CHHHHHHHHhCEEEEEecCCCccHHHHHHHhC
Confidence 4677888777665443332232 2221 11222111111 23455556555544444332 334444555
Q ss_pred hCCCcEeeEEcC-CCcEE----EEEehhHHHHHH
Q 017586 237 DGKFLHLPVVDR-DGDVV----DVVDVIHITHAA 265 (369)
Q Consensus 237 ~~~~~~l~Vvd~-~g~~~----Givt~~Di~~~~ 265 (369)
..+...+.++|. +|+++ |.++..+++..+
T Consensus 74 ~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 74 VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHH
Confidence 566777778888 78766 666777777644
No 225
>PRK10026 arsenate reductase; Provisional
Probab=29.33 E-value=2.9e+02 Score=21.94 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=55.4
Q ss_pred eeEECCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCc---e--ee-cCCCC
Q 017586 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP---E--CA-TIDTP 227 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~---~--~v-~~~~~ 227 (369)
+...+...+...|++.+.++++..-.+---. -=.|..+|. .++.... ....+++++.- . .. ..+.+
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~---~ppt~~eL~-~~l~~~g----~~~~~lint~~~~yr~L~~~~~~ls 77 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPTIIHYLE---TPPTRDELV-KLIADMG----ISVRALLRKNVEPYEELGLAEDKFT 77 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeeeC---CCcCHHHHH-HHHHhCC----CCHHHHHHcCCchHHHcCCCccCCC
Confidence 6667778899999999999887653332111 126777774 5554321 12333332210 0 00 14578
Q ss_pred HHHHHHHhHhCCC--cEeeEEcCCCcEEEE
Q 017586 228 IVDALHIMHDGKF--LHLPVVDRDGDVVDV 255 (369)
Q Consensus 228 l~~a~~~~~~~~~--~~l~Vvd~~g~~~Gi 255 (369)
..++++.|.+++. ++=.|++++|.++|-
T Consensus 78 ~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R 107 (141)
T PRK10026 78 DDQLIDFMLQHPILINRPIVVTPLGTRLCR 107 (141)
T ss_pred HHHHHHHHHhCccceeCcEEEcCCCeEEEC
Confidence 8999999999873 222345566777665
No 226
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=26.24 E-value=2.2e+02 Score=24.83 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=66.8
Q ss_pred HHHHhHhCCCcEeeEEcC-CCcEEEEEeh-hH-------HHHHHHHHhcccCCCc----hHHHHHHHHHHHHHh-hcC-C
Q 017586 231 ALHIMHDGKFLHLPVVDR-DGDVVDVVDV-IH-------ITHAAVATVRNTAGSN----NEAASTMMQKFWDSA-MAL-S 295 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~-~g~~~Givt~-~D-------i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~-~ 295 (369)
+..+|.+.+..++.-.|- +.++.|..+. -| +++++-.++.++.++. ...+..-.+.+.+++ +++ .
T Consensus 116 la~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglav 195 (354)
T KOG1503|consen 116 LASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAV 195 (354)
T ss_pred HHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeE
Confidence 345667778888877774 3457777642 12 4555555665554432 112222233444444 222 2
Q ss_pred CCCCCcccccccccccccCCCCcccccCCCCCCCCCCCce-----eEE-eeCCCCceeEEecCCCChHhHHHhhcc
Q 017586 296 PNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAF-----AFK-VQDNKGLMHRFTCGMLPFPNFIEVTNY 365 (369)
Q Consensus 296 ~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~-V~~~~g~~~~~~~g~~~~~~~~~~~~~ 365 (369)
..++..+|++|+..-.-+-.|.. .....|... +|... ... |=|..|++ .+=.+||++++++
T Consensus 196 ihge~k~~e~d~~dgr~spp~~~-~~t~~~~~~--lp~~~~k~kppltvvgdvggri------aimvddiiddvqs 262 (354)
T KOG1503|consen 196 IHGEQKDTESDLVDGRHSPPPVV-TATTHPSLE--LPAQISKEKPPLTVVGDVGGRI------AIMVDDIIDDVQS 262 (354)
T ss_pred eeccccccccccccCCcCCCCcc-ccccCcccc--CchhhcccCCCeEEEeccCceE------EEEehhhHHhHHH
Confidence 23445589999887654444433 223344444 55544 333 44668888 3335777777654
No 227
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=25.65 E-value=71 Score=25.96 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=15.5
Q ss_pred EeeEeeCCeEEEEEehHH
Q 017586 74 HLPVVENGEVIALLDIAK 91 (369)
Q Consensus 74 ~lpVvd~~~~vGiv~~~d 91 (369)
.+||+.+|+++|++++..
T Consensus 118 VvPi~~~g~~iGvlDiDS 135 (163)
T COG1956 118 VVPIFKDGKLIGVLDIDS 135 (163)
T ss_pred EEEEEECCEEEEEEecCC
Confidence 689999999999998644
No 228
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=23.97 E-value=60 Score=23.35 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=20.6
Q ss_pred CCCcEEEEEehhHHHHHHHhc-cCCCC
Q 017586 14 SNALLCGILTDKDIATRVIAR-ELNLE 39 (369)
Q Consensus 14 ~~~~~~Givt~~di~~~~~~~-~~~~~ 39 (369)
++|++.|=||..||+..+... +..++
T Consensus 24 ~~gklfGSVt~~dIa~~l~~~~g~~Id 50 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALKEQTGIEID 50 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHHHCCSSSSS
T ss_pred CCcceecCcCHHHHHHHHHHhhCCeEe
Confidence 578999999999999777766 55443
No 229
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=23.51 E-value=54 Score=24.33 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.8
Q ss_pred hCCCcEeeEEcCCCcEEEE
Q 017586 237 DGKFLHLPVVDRDGDVVDV 255 (369)
Q Consensus 237 ~~~~~~l~Vvd~~g~~~Gi 255 (369)
..+...-||+|.+|+++||
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3466678999999999997
No 230
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.51 E-value=94 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=24.1
Q ss_pred CcCEEEEEcCCCcEEEEEehhHHHHHHHhccCCC
Q 017586 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~di~~~~~~~~~~~ 38 (369)
+...+-|+|++|..+|+++..+.++.+-..++++
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDL 51 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELAEEAGLDL 51 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCE
Confidence 3456778888888889999888876555444333
No 231
>smart00594 UAS UAS domain.
Probab=21.50 E-value=1.4e+02 Score=22.70 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH---HHHh
Q 017586 160 TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA---LHIM 235 (369)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a---~~~~ 235 (369)
..+..+|++...+.+-..++.+. +... .-..+.+..+. +..+.+++++..+....+.+-.+. ...+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~----~c~~~~r~vl~------~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~ 82 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSP----DSQVFNRDVLC------NEAVKSLIRENFIFWQVDVDTSEGQRVSQFY 82 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCc----hHHHHHHHHcc------CHHHHHHHHcCEEEEEecCCChhHHHHHHhc
Confidence 34788888777765433333333 2221 11122111111 345666666555554444333334 4444
Q ss_pred HhCCCcEeeEEcCCC
Q 017586 236 HDGKFLHLPVVDRDG 250 (369)
Q Consensus 236 ~~~~~~~l~Vvd~~g 250 (369)
.-.+...+.+++..|
T Consensus 83 ~~~~~P~~~~l~~~~ 97 (122)
T smart00594 83 KLDSFPYVAIVDPRT 97 (122)
T ss_pred CcCCCCEEEEEecCC
Confidence 445666777888776
No 232
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=20.35 E-value=86 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.9
Q ss_pred CcEeeEEcCCCcEEEEEehhHHHHHH
Q 017586 240 FLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 240 ~~~l~Vvd~~g~~~Givt~~Di~~~~ 265 (369)
...+-|+|++|..+|+++..+.++-.
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A 44 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELA 44 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHH
Confidence 45678899999999999999988743
No 233
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=20.10 E-value=1.1e+02 Score=21.12 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=13.3
Q ss_pred EEEEEcCCCcEEEEEeh
Q 017586 8 ALLLTDSNALLCGILTD 24 (369)
Q Consensus 8 ~~~V~d~~~~~~Givt~ 24 (369)
+.||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 57888878888888653
Done!