BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017588
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 216/381 (56%), Gaps = 25/381 (6%)
Query: 1 MRLSWIT-ENSSPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVY 59
M +SW+T + + V+Y + A G S+Y + Y SG IH + LK NT Y
Sbjct: 36 MIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKY 95
Query: 60 YYRCGPDSAQER-SFKTPPA---QLPIKFAIVGDLGQTGWTNSTLQH--VAKSNYDMLLL 113
YY G + R SF TPP +P F ++GDLGQ+ +N+TL H ++ +L
Sbjct: 96 YYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLF 155
Query: 114 PGDLSYADL----DQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTK-FTSYNA 168
GDLSYAD D WD++GR E + +PW+ T GNHEIE P I+ T+ F ++
Sbjct: 156 VGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSY 215
Query: 169 RWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWI 228
R+ +P+E S S S +YS A H+++L SY+ + + + QY WL+ +L KV R +TPW+
Sbjct: 216 RYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWL 275
Query: 229 VVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGK-- 286
+VL+H+P YN+ H +E E MR E + +V VVFAGHVHAYER RVSN
Sbjct: 276 IVLMHSPLYNSYNHHF--MEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYK 333
Query: 287 ---------PDNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATH 337
D PV+ITIGD GN + S + PQP S FREASFGHG ++ N TH
Sbjct: 334 ITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTH 393
Query: 338 AQWTWHRNDDDKPIASDSIWL 358
A ++W+RN D + +DS+W
Sbjct: 394 AHFSWNRNQDGVAVEADSVWF 414
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 216/381 (56%), Gaps = 25/381 (6%)
Query: 1 MRLSWIT-ENSSPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVY 59
M +SW+T + + V+Y + A G S+Y + Y SG IH + LK NT Y
Sbjct: 42 MIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKY 101
Query: 60 YYRCGPDSAQER-SFKTPPA---QLPIKFAIVGDLGQTGWTNSTLQH--VAKSNYDMLLL 113
YY G + R SF TPP +P F ++GDLGQ+ +N+TL H ++ +L
Sbjct: 102 YYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLF 161
Query: 114 PGDLSYADL----DQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTK-FTSYNA 168
GDLSYAD D WD++GR E + +PW+ T GNHEIE P I+ T+ F ++
Sbjct: 162 VGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSY 221
Query: 169 RWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWI 228
R+ +P+E S S S +YS A H+++L SY+ + + + QY WL+ +L KV R +TPW+
Sbjct: 222 RYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWL 281
Query: 229 VVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGK-- 286
+VL+H+P YN+ H +E E MR E + +V VVFAGHVHAYER RVSN
Sbjct: 282 IVLMHSPLYNSYNHHF--MEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYK 339
Query: 287 ---------PDNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATH 337
D PV+ITIGD GN + S + PQP S FREASFGHG ++ N TH
Sbjct: 340 ITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTH 399
Query: 338 AQWTWHRNDDDKPIASDSIWL 358
A ++W+RN D + +DS+W
Sbjct: 400 AHFSWNRNQDGVAVEADSVWF 420
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 216/381 (56%), Gaps = 25/381 (6%)
Query: 1 MRLSWIT-ENSSPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVY 59
M +SW+T + + V+Y + A G S+Y + Y SG IH + LK NT Y
Sbjct: 34 MIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKY 93
Query: 60 YYRCGPDSAQER-SFKTPPA---QLPIKFAIVGDLGQTGWTNSTLQH--VAKSNYDMLLL 113
YY G + R SF TPP +P F ++GDLGQ+ +N+TL H ++ +L
Sbjct: 94 YYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLF 153
Query: 114 PGDLSYADL----DQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTK-FTSYNA 168
GDLSYAD D WD++GR E + +PW+ T GNHEIE P I+ T+ F ++
Sbjct: 154 VGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSY 213
Query: 169 RWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWI 228
R+ +P+E S S S +YS A H+++L SY+ + + + QY WL+ +L KV R +TPW+
Sbjct: 214 RYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWL 273
Query: 229 VVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGK-- 286
+VL+H+P YN+ H +E E MR E + +V VVFAGHVHAYER RVSN
Sbjct: 274 IVLMHSPLYNSYNHH--FMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYK 331
Query: 287 ---------PDNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATH 337
D PV+ITIGD GN + S + PQP S FREASFGHG ++ N TH
Sbjct: 332 ITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTH 391
Query: 338 AQWTWHRNDDDKPIASDSIWL 358
A ++W+RN D + +DS+W
Sbjct: 392 AHFSWNRNQDGVAVEADSVWF 412
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 217/380 (57%), Gaps = 26/380 (6%)
Query: 3 LSWIT--ENSSPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVYY 60
+SW T + + V Y + A GT +Y Y Y S IH + L+ +T YY
Sbjct: 42 ISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYY 101
Query: 61 YRCG-PDSAQERSFKTPPA---QLPIKFAIVGDLGQTGWTNSTLQHVAKSNY--DMLLLP 114
YR G D+ ++ F TPP +P F ++GD+GQT +N+TL H +++ +L
Sbjct: 102 YRLGFGDAKRQFWFVTPPKPGPDVPYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFM 161
Query: 115 GDLSYADL----DQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTK-FTSYNAR 169
GDLSY++ D WD++GR E + +PW+ T GNHEI+ P I + F + R
Sbjct: 162 GDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNR 221
Query: 170 WRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIV 229
+ P E SGS L+Y+ A H+++L SY+ F + S QYKW ++L KV+R +TPW++
Sbjct: 222 YPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLI 281
Query: 230 VLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGK--- 286
VL+HAP YN+ AH +E E MR E +V +VF+GHVH+YER RVSN
Sbjct: 282 VLVHAPLYNSYEAHY--MEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNI 339
Query: 287 --------PDNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHA 338
D PV+ITIGDGGN EGLAS PQP+ S FREASFGHG ++ N THA
Sbjct: 340 VNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFGHGIFDIKNRTHA 399
Query: 339 QWTWHRNDDDKPIASDSIWL 358
++WHRN D + +DS+WL
Sbjct: 400 HFSWHRNQDGASVEADSLWL 419
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 146 TQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
T ++ +L ++++ F N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 154 TGAVQQLTRLVLVNALYF---NGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 171 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 171 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 171 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 171 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 175 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 213
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 171 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 169 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 207
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 184 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 222
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 194 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 232
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N +W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 167 FNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 205
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 151 EIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
E+ +L ++++ F+ +W+ PF E+ ++ L++ D + V V M+ F+
Sbjct: 159 ELTRLVLVNALYFS---GQWKTPFLEASTHQRLFHKSDGSTVSVPMMAQSNKFN 209
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 176 ESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNS-DQYKWLEADLNKVDRGKTPWIVVLIHA 234
++ SNS LY F + V+ GS+TD + D YK E ++ + +RG + LI
Sbjct: 24 KASSNSQLYKLFRNCCLAVLNAGSHTDSSADIYDSYKDFEVNIIRRERGIK---LELIEP 80
Query: 235 PWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVH 294
P GEV G+R+ +E ++ ++F G ER++ D+ H
Sbjct: 81 P---EEAFVDGEV-IVGIRELLESVLRD----ILFTG-----ERYSETDLEHADSATLTH 127
Query: 295 IT 296
+
Sbjct: 128 VV 129
>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
Length = 291
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 90 LGQTGWTNSTLQHVAKSNYDMLLLPGDLS 118
L + G N T Q+V K +LLPGDLS
Sbjct: 79 LDEEGDANETKQYVEKEGVKCVLLPGDLS 107
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 53 LKPNTVYYYR--CGPDSAQERSFKTPPA------QLPIKFAIVGDLGQTGWTNSTLQHVA 104
L+PN VYYYR G + + KT PA Q+ FA +T +H+A
Sbjct: 82 LEPNKVYYYRFKTGHELSPVGKTKTLPAPGANVPQMTFAFASCQQYEHGYYT--AYKHMA 139
Query: 105 KSNYDMLLLPGDLSY 119
K D++ GD Y
Sbjct: 140 KEKLDLVFHLGDYIY 154
>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|B Chain B, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|C Chain C, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|D Chain D, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|E Chain E, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|F Chain F, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|G Chain G, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|H Chain H, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
Length = 291
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 64 GPDSAQERSFKTPPAQLPIKFAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLS 118
G DS R+ A+ AI L + G N T Q+V K +LLPGDLS
Sbjct: 54 GGDSGIGRAVSIAFAKEGANIAI-AYLDEEGDANETKQYVEKEGVKCVLLPGDLS 107
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 166 YNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFD 204
+N W+ PF +S ++ L++ D + V V M+ F+
Sbjct: 171 FNGCWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFN 209
>pdb|4HD0|A Chain A, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT
BLOCKS DNA Double-Strand Break Repair
pdb|4HD0|B Chain B, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT
BLOCKS DNA Double-Strand Break Repair
Length = 339
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 17/199 (8%)
Query: 97 NSTLQHVAKSNYDMLLLPGDLSYADLDQP--LWDSFGRMVEPLASQRPWMVTQGNHE-IE 153
+ L+ + N D +L+ GDL ++ P L + + P P +GNH+ +
Sbjct: 36 KNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQ 95
Query: 154 KLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQY--- 210
+ P + + + + + + + S ++ G Y D + + +Y
Sbjct: 96 RGPSVLNL-LEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSS 154
Query: 211 KWLEADLNKVDRGKTPW--IVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVV 268
W EA+ + R P ++++H + A + G+ EG ++ AR
Sbjct: 155 AWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYAR---- 210
Query: 269 FAGHVHAYERFTRVSNGKP 287
GH+H +R+ +G P
Sbjct: 211 --GHIH--KRYETSYSGSP 225
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 152 IEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHV 194
+++ + STKFT YN + F E G +S DA G HV
Sbjct: 151 VDRATCLRSTKFTIYNNMFCAGFHEGGRDS---CQGDAGGPHV 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,639,301
Number of Sequences: 62578
Number of extensions: 558079
Number of successful extensions: 1227
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 30
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)