Query 017588
Match_columns 369
No_of_seqs 284 out of 2698
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02533 probable purple acid 100.0 1.3E-76 2.7E-81 561.2 44.2 369 1-369 57-427 (427)
2 KOG1378 Purple acid phosphatas 100.0 5.9E-72 1.3E-76 510.7 36.3 363 1-367 59-444 (452)
3 cd00839 MPP_PAPs purple acid p 100.0 1.4E-48 3.1E-53 357.6 31.5 277 79-360 2-294 (294)
4 PTZ00422 glideosome-associated 100.0 2E-36 4.4E-41 277.5 27.9 261 73-361 17-330 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 3.8E-34 8.3E-39 259.8 23.4 243 82-348 1-277 (277)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 3.8E-30 8.3E-35 231.5 22.4 229 79-344 2-261 (262)
7 KOG2679 Purple (tartrate-resis 100.0 2.9E-27 6.2E-32 200.4 19.1 257 79-361 41-330 (336)
8 PF09423 PhoD: PhoD-like phosp 99.9 1.5E-25 3.3E-30 216.5 27.6 297 40-342 58-453 (453)
9 cd07402 MPP_GpdQ Enterobacter 99.9 4.8E-26 1E-30 202.4 18.9 217 83-334 1-237 (240)
10 cd07396 MPP_Nbla03831 Homo sap 99.9 5.9E-26 1.3E-30 204.4 19.1 193 82-300 1-244 (267)
11 PRK11148 cyclic 3',5'-adenosin 99.9 1.2E-24 2.6E-29 196.8 22.1 240 73-349 5-265 (275)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 1.2E-22 2.5E-27 181.5 18.4 185 84-283 2-217 (256)
13 COG3540 PhoD Phosphodiesterase 99.9 1E-22 2.2E-27 185.9 16.8 268 2-278 53-420 (522)
14 cd07399 MPP_YvnB Bacillus subt 99.9 6.6E-22 1.4E-26 171.9 15.7 151 82-280 1-165 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 3.2E-20 6.8E-25 170.0 16.2 190 85-280 41-265 (296)
16 cd08163 MPP_Cdc1 Saccharomyces 99.8 9.4E-19 2E-23 155.5 17.1 162 105-280 43-232 (257)
17 PF00149 Metallophos: Calcineu 99.8 8.8E-20 1.9E-24 153.4 6.2 190 82-276 1-200 (200)
18 cd07393 MPP_DR1119 Deinococcus 99.8 1.1E-17 2.3E-22 147.5 16.0 191 84-300 1-226 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.8 8.7E-18 1.9E-22 144.8 14.9 152 80-280 1-180 (199)
20 TIGR03767 P_acnes_RR metalloph 99.8 3.9E-17 8.4E-22 152.7 19.5 116 181-299 290-416 (496)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.8 3E-17 6.5E-22 140.1 15.6 182 84-298 1-188 (188)
22 TIGR03729 acc_ester putative p 99.8 2.6E-17 5.6E-22 145.9 15.4 193 83-299 1-237 (239)
23 cd07385 MPP_YkuE_C Bacillus su 99.7 6E-16 1.3E-20 135.9 15.1 168 81-283 1-173 (223)
24 cd07388 MPP_Tt1561 Thermus the 99.7 1.4E-15 3E-20 131.7 16.3 174 80-274 3-189 (224)
25 COG1409 Icc Predicted phosphoh 99.7 1.7E-15 3.6E-20 138.9 17.1 179 82-276 1-193 (301)
26 cd07400 MPP_YydB Bacillus subt 99.7 8.8E-16 1.9E-20 125.3 13.6 132 84-299 1-144 (144)
27 PRK11340 phosphodiesterase Yae 99.7 2E-15 4.3E-20 136.1 16.3 167 79-282 47-220 (271)
28 cd07404 MPP_MS158 Microscilla 99.7 5.3E-16 1.2E-20 129.7 10.8 157 84-297 1-162 (166)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.6 6.7E-15 1.5E-19 129.1 13.5 186 83-279 1-204 (223)
30 KOG1432 Predicted DNA repair e 99.6 2.2E-13 4.7E-18 120.4 22.3 264 71-360 46-376 (379)
31 TIGR03768 RPA4764 metallophosp 99.6 5.9E-14 1.3E-18 130.2 16.2 96 182-278 292-413 (492)
32 PF14008 Metallophos_C: Iron/z 99.5 5.3E-14 1.2E-18 96.3 7.0 62 290-356 1-62 (62)
33 cd07379 MPP_239FB Homo sapiens 99.5 1E-12 2.2E-17 105.9 12.2 134 83-297 1-134 (135)
34 PF12850 Metallophos_2: Calcin 99.5 4.2E-13 9.1E-18 110.8 10.1 139 82-303 1-140 (156)
35 cd07397 MPP_DevT Myxococcus xa 99.4 2.8E-12 6.1E-17 111.3 14.7 201 82-298 1-232 (238)
36 cd00838 MPP_superfamily metall 99.4 1.8E-12 3.9E-17 103.1 12.1 116 85-280 1-119 (131)
37 COG1408 Predicted phosphohydro 99.4 5E-12 1.1E-16 113.6 14.0 75 79-154 42-119 (284)
38 KOG3770 Acid sphingomyelinase 99.3 7.9E-11 1.7E-15 112.1 18.6 174 98-279 199-407 (577)
39 cd07394 MPP_Vps29 Homo sapiens 99.3 3.4E-10 7.4E-15 95.3 20.2 166 83-349 1-170 (178)
40 cd08166 MPP_Cdc1_like_1 unchar 99.3 1E-11 2.2E-16 104.4 10.5 109 103-280 38-151 (195)
41 cd00841 MPP_YfcE Escherichia c 99.3 3E-11 6.4E-16 99.8 11.5 153 83-342 1-154 (155)
42 PRK05340 UDP-2,3-diacylglucosa 99.3 3.7E-11 8E-16 106.6 12.6 194 82-300 1-219 (241)
43 cd07384 MPP_Cdc1_like Saccharo 99.3 4.7E-11 1E-15 99.8 11.2 50 104-153 42-100 (171)
44 cd08165 MPP_MPPE1 human MPPE1 99.2 4.3E-11 9.3E-16 98.6 9.6 51 103-153 34-89 (156)
45 PRK09453 phosphodiesterase; Pr 99.2 7.9E-10 1.7E-14 93.8 16.0 70 82-153 1-76 (182)
46 PF14582 Metallophos_3: Metall 99.2 3.4E-10 7.3E-15 95.2 12.5 181 81-280 5-222 (255)
47 cd07389 MPP_PhoD Bacillus subt 99.2 4.2E-10 9.1E-15 99.1 13.8 158 83-280 1-208 (228)
48 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 5.1E-10 1.1E-14 98.6 14.2 69 85-153 2-81 (231)
49 TIGR00040 yfcE phosphoesterase 99.2 3.3E-10 7.1E-15 93.8 12.1 61 82-152 1-63 (158)
50 COG2129 Predicted phosphoester 99.2 4.8E-10 1E-14 94.6 12.7 179 80-280 2-191 (226)
51 TIGR00583 mre11 DNA repair pro 99.2 6.3E-09 1.4E-13 98.0 20.9 74 80-153 2-123 (405)
52 cd07403 MPP_TTHA0053 Thermus t 99.1 6.2E-10 1.3E-14 88.7 9.1 49 228-279 58-106 (129)
53 cd00845 MPP_UshA_N_like Escher 99.0 1.8E-09 4E-14 96.5 11.7 173 82-278 1-208 (252)
54 COG1768 Predicted phosphohydro 99.0 9.5E-09 2.1E-13 82.9 13.2 165 107-299 43-219 (230)
55 cd08164 MPP_Ted1 Saccharomyces 99.0 1.2E-09 2.5E-14 91.9 8.1 49 105-153 42-111 (193)
56 cd07410 MPP_CpdB_N Escherichia 99.0 1E-08 2.2E-13 93.0 14.4 179 82-277 1-231 (277)
57 cd07398 MPP_YbbF-LpxH Escheric 99.0 3E-09 6.5E-14 92.9 10.5 190 85-299 1-216 (217)
58 PHA02546 47 endonuclease subun 99.0 8.2E-08 1.8E-12 89.4 19.7 72 82-153 1-89 (340)
59 cd07406 MPP_CG11883_N Drosophi 98.9 2.4E-08 5.1E-13 89.5 14.3 172 82-277 1-208 (257)
60 COG2908 Uncharacterized protei 98.9 2.4E-09 5.2E-14 91.4 7.0 189 85-301 1-216 (237)
61 COG0622 Predicted phosphoester 98.9 7.9E-08 1.7E-12 79.8 15.6 161 82-344 2-164 (172)
62 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.9 1.3E-07 2.8E-12 84.3 16.0 180 84-282 1-235 (262)
63 COG0420 SbcD DNA repair exonuc 98.8 2.7E-08 5.8E-13 94.8 11.9 72 82-153 1-88 (390)
64 cd07412 MPP_YhcR_N Bacillus su 98.8 8.1E-08 1.8E-12 87.4 13.7 203 82-300 1-260 (288)
65 cd07408 MPP_SA0022_N Staphyloc 98.7 1.1E-07 2.3E-12 85.3 11.5 180 82-279 1-216 (257)
66 PRK04036 DNA polymerase II sma 98.7 1.8E-07 3.9E-12 91.4 13.1 75 79-153 241-343 (504)
67 cd07411 MPP_SoxB_N Thermus the 98.7 2.7E-07 5.8E-12 83.0 13.1 157 98-277 40-220 (264)
68 TIGR00282 metallophosphoestera 98.7 2.7E-06 5.8E-11 75.6 17.6 192 82-303 1-204 (266)
69 cd07409 MPP_CD73_N CD73 ecto-5 98.7 3.2E-07 7E-12 83.2 12.1 155 99-277 40-219 (281)
70 cd07382 MPP_DR1281 Deinococcus 98.6 1.7E-06 3.8E-11 76.6 16.1 181 83-296 1-193 (255)
71 KOG3662 Cell division control 98.6 2.4E-07 5.2E-12 85.7 10.3 114 79-202 46-183 (410)
72 cd07386 MPP_DNA_pol_II_small_a 98.6 1.2E-06 2.7E-11 77.7 14.3 69 85-153 2-94 (243)
73 TIGR00619 sbcd exonuclease Sbc 98.6 1.9E-07 4E-12 83.3 8.4 72 82-153 1-88 (253)
74 cd07424 MPP_PrpA_PrpB PrpA and 98.6 9.9E-08 2.2E-12 82.6 6.5 64 83-153 2-67 (207)
75 PRK09419 bifunctional 2',3'-cy 98.5 1.8E-06 3.9E-11 92.9 15.2 182 80-277 659-883 (1163)
76 cd07425 MPP_Shelphs Shewanella 98.5 1.6E-07 3.4E-12 81.2 5.7 69 85-153 1-80 (208)
77 cd07407 MPP_YHR202W_N Saccharo 98.5 2E-05 4.3E-10 71.3 18.3 200 80-303 4-251 (282)
78 PRK10966 exonuclease subunit S 98.5 5.2E-07 1.1E-11 85.8 8.4 72 82-153 1-87 (407)
79 PRK09968 serine/threonine-spec 98.4 3.4E-07 7.3E-12 79.8 6.1 64 82-152 15-80 (218)
80 cd07405 MPP_UshA_N Escherichia 98.4 2.2E-06 4.7E-11 77.9 11.6 184 82-277 1-222 (285)
81 cd07380 MPP_CWF19_N Schizosacc 98.3 3E-06 6.4E-11 68.9 8.2 121 85-283 1-129 (150)
82 COG0737 UshA 5'-nucleotidase/2 98.2 1.7E-05 3.8E-10 78.3 13.2 207 79-303 24-271 (517)
83 cd08162 MPP_PhoA_N Synechococc 98.2 3.1E-05 6.6E-10 71.2 12.6 71 82-155 1-93 (313)
84 PRK09558 ushA bifunctional UDP 98.1 5.8E-05 1.3E-09 75.2 13.5 187 79-277 32-258 (551)
85 TIGR01530 nadN NAD pyrophospha 98.1 6.4E-05 1.4E-09 74.7 13.6 155 99-277 40-219 (550)
86 PRK09418 bifunctional 2',3'-cy 98.1 0.0001 2.2E-09 75.3 15.2 64 224-303 244-308 (780)
87 cd07391 MPP_PF1019 Pyrococcus 98.1 7.7E-06 1.7E-10 68.6 6.1 52 101-153 35-88 (172)
88 TIGR00024 SbcD_rel_arch putati 98.0 2E-05 4.3E-10 68.8 7.3 69 82-152 15-101 (225)
89 PHA02239 putative protein phos 97.9 1.9E-05 4.1E-10 69.4 6.4 70 82-153 1-73 (235)
90 PRK09419 bifunctional 2',3'-cy 97.9 0.00011 2.3E-09 79.5 13.1 48 223-277 233-281 (1163)
91 COG4186 Predicted phosphoester 97.9 0.00027 5.9E-09 56.2 11.8 65 83-152 5-85 (186)
92 PRK00166 apaH diadenosine tetr 97.8 3E-05 6.4E-10 69.7 5.4 66 82-152 1-68 (275)
93 PRK11907 bifunctional 2',3'-cy 97.8 0.00052 1.1E-08 70.4 15.0 73 80-155 114-215 (814)
94 COG1311 HYS2 Archaeal DNA poly 97.7 0.00057 1.2E-08 64.5 12.9 75 79-153 223-321 (481)
95 cd07390 MPP_AQ1575 Aquifex aeo 97.7 6.7E-05 1.5E-09 62.6 6.2 63 85-153 2-82 (168)
96 cd07423 MPP_PrpE Bacillus subt 97.7 5E-05 1.1E-09 67.0 5.2 69 82-153 1-80 (234)
97 cd07387 MPP_PolD2_C PolD2 (DNA 97.7 0.0013 2.8E-08 58.4 13.7 131 84-219 2-176 (257)
98 TIGR01390 CycNucDiestase 2',3' 97.6 0.00037 8E-09 70.2 10.3 46 224-277 195-241 (626)
99 PRK13625 bis(5'-nucleosyl)-tet 97.6 0.00016 3.4E-09 64.3 6.8 68 82-152 1-78 (245)
100 cd07421 MPP_Rhilphs Rhilph pho 97.6 0.00016 3.5E-09 64.7 6.5 67 83-152 3-79 (304)
101 cd07413 MPP_PA3087 Pseudomonas 97.6 0.00011 2.5E-09 64.1 5.3 67 84-153 1-76 (222)
102 PRK09420 cpdB bifunctional 2', 97.5 0.0014 3E-08 66.3 13.4 72 79-154 23-123 (649)
103 PRK11439 pphA serine/threonine 97.5 0.00015 3.3E-09 63.2 5.3 74 73-153 8-83 (218)
104 COG1692 Calcineurin-like phosp 97.4 0.0075 1.6E-07 52.0 14.4 186 82-296 1-195 (266)
105 KOG2863 RNA lariat debranching 97.4 0.00077 1.7E-08 60.9 8.5 173 82-275 1-229 (456)
106 cd07422 MPP_ApaH Escherichia c 97.4 0.00025 5.5E-09 63.1 5.2 64 85-153 2-67 (257)
107 cd00144 MPP_PPP_family phospho 97.3 0.00027 5.8E-09 61.9 4.5 66 85-153 1-68 (225)
108 PF13277 YmdB: YmdB-like prote 97.3 0.0069 1.5E-07 52.9 12.8 178 85-296 1-191 (253)
109 TIGR00668 apaH bis(5'-nucleosy 97.3 0.00037 8E-09 62.3 5.1 65 83-152 2-68 (279)
110 KOG3325 Membrane coat complex 97.2 0.0047 1E-07 48.8 9.9 86 254-361 97-183 (183)
111 cd07381 MPP_CapA CapA and rela 97.0 0.012 2.7E-07 51.9 11.9 62 211-280 162-223 (239)
112 smart00854 PGA_cap Bacterial c 96.9 0.017 3.6E-07 51.1 12.2 60 213-280 162-221 (239)
113 COG5555 Cytolysin, a secreted 96.8 0.0011 2.5E-08 57.9 3.3 169 108-277 127-335 (392)
114 COG1407 Predicted ICC-like pho 96.7 0.0044 9.5E-08 53.7 6.6 72 81-153 19-110 (235)
115 KOG2310 DNA repair exonuclease 96.7 0.002 4.4E-08 61.3 4.4 45 79-123 11-68 (646)
116 cd07416 MPP_PP2B PP2B, metallo 96.5 0.004 8.6E-08 57.0 4.8 68 83-153 44-114 (305)
117 smart00156 PP2Ac Protein phosp 96.4 0.0053 1.2E-07 55.3 5.4 69 82-153 28-99 (271)
118 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.1 0.008 1.7E-07 54.4 4.8 68 83-153 43-113 (285)
119 PF09587 PGA_cap: Bacterial ca 96.0 0.082 1.8E-06 47.1 10.9 64 209-280 169-232 (250)
120 cd07420 MPP_RdgC Drosophila me 96.0 0.012 2.6E-07 54.0 5.5 68 83-153 52-123 (321)
121 PTZ00239 serine/threonine prot 95.9 0.012 2.7E-07 53.6 4.8 67 84-153 45-114 (303)
122 cd07414 MPP_PP1_PPKL PP1, PPKL 95.9 0.012 2.7E-07 53.5 4.8 68 83-153 51-121 (293)
123 cd07418 MPP_PP7 PP7, metalloph 95.8 0.017 3.7E-07 54.1 5.4 69 82-153 66-138 (377)
124 PTZ00244 serine/threonine-prot 95.8 0.01 2.2E-07 53.9 3.9 67 84-153 54-123 (294)
125 PTZ00480 serine/threonine-prot 95.7 0.012 2.5E-07 54.1 4.0 68 83-153 60-130 (320)
126 KOG4419 5' nucleotidase [Nucle 95.7 0.12 2.5E-06 50.5 10.7 57 207-277 211-270 (602)
127 cd07417 MPP_PP5_C PP5, C-termi 95.2 0.057 1.2E-06 49.6 6.6 69 82-153 60-132 (316)
128 cd07419 MPP_Bsu1_C Arabidopsis 94.7 0.059 1.3E-06 49.6 5.4 68 83-153 49-127 (311)
129 PF04042 DNA_pol_E_B: DNA poly 94.1 0.053 1.2E-06 46.8 3.6 72 84-155 1-93 (209)
130 PF00041 fn3: Fibronectin type 93.3 0.17 3.8E-06 36.0 4.7 55 1-65 16-75 (85)
131 KOG3947 Phosphoesterases [Gene 91.0 0.53 1.2E-05 41.6 5.5 68 79-153 59-126 (305)
132 KOG0196 Tyrosine kinase, EPH ( 87.7 1.5 3.3E-05 44.7 6.6 34 45-78 497-537 (996)
133 PTZ00235 DNA polymerase epsilo 86.1 6.2 0.00013 35.6 9.0 85 69-153 15-122 (291)
134 KOG0372 Serine/threonine speci 82.4 2.4 5.1E-05 37.0 4.6 66 84-153 45-114 (303)
135 KOG0374 Serine/threonine speci 81.4 1.3 2.8E-05 41.0 2.9 70 83-155 60-133 (331)
136 KOG2476 Uncharacterized conser 80.8 4.2 9.1E-05 38.7 5.9 67 80-150 4-75 (528)
137 KOG0371 Serine/threonine prote 78.0 3.2 7E-05 36.4 4.0 68 83-153 61-131 (319)
138 cd07390 MPP_AQ1575 Aquifex aeo 77.4 3.3 7.1E-05 34.3 3.9 18 263-280 124-141 (168)
139 KOG0373 Serine/threonine speci 76.0 5 0.00011 34.4 4.5 65 84-153 48-117 (306)
140 PHA03008 hypothetical protein; 67.9 11 0.00024 31.7 4.6 42 229-277 164-205 (234)
141 KOG0375 Serine-threonine phosp 66.0 10 0.00022 35.1 4.4 68 83-153 89-159 (517)
142 smart00060 FN3 Fibronectin typ 65.4 6.8 0.00015 26.3 2.8 21 45-65 56-76 (83)
143 COG2248 Predicted hydrolase (m 59.8 29 0.00063 30.7 5.9 73 79-152 174-249 (304)
144 KOG3513 Neural cell adhesion m 56.9 19 0.00041 38.4 5.1 56 1-65 836-896 (1051)
145 PF06874 FBPase_2: Firmicute f 56.7 9.4 0.0002 38.1 2.8 44 103-152 180-223 (640)
146 cd00063 FN3 Fibronectin type 3 56.5 12 0.00027 25.9 2.9 22 44-65 55-76 (93)
147 KOG4221 Receptor mediating net 50.7 53 0.0012 35.6 7.2 34 44-77 572-612 (1381)
148 KOG4221 Receptor mediating net 47.3 21 0.00046 38.5 3.7 30 49-78 677-713 (1381)
149 TIGR02855 spore_yabG sporulati 45.8 17 0.00036 32.4 2.4 25 251-275 140-165 (283)
150 PF05582 Peptidase_U57: YabG p 44.8 22 0.00047 31.9 2.9 26 251-276 141-167 (287)
151 COG2843 PgsA Putative enzyme o 44.2 78 0.0017 29.9 6.6 62 210-280 210-272 (372)
152 PF01784 NIF3: NIF3 (NGG1p int 43.9 24 0.00053 31.1 3.2 44 228-275 55-98 (241)
153 PF09294 Interfer-bind: Interf 43.1 20 0.00044 26.7 2.3 19 47-65 68-86 (106)
154 PRK10799 metal-binding protein 41.7 48 0.001 29.3 4.7 44 229-277 59-102 (247)
155 TIGR00486 YbgI_SA1388 dinuclea 40.5 53 0.0012 29.1 4.8 43 228-275 59-101 (249)
156 COG3855 Fbp Uncharacterized pr 40.1 28 0.00061 33.4 3.0 43 104-152 187-229 (648)
157 KOG3818 DNA polymerase epsilon 39.3 90 0.002 30.0 6.1 76 79-154 280-370 (525)
158 cd02852 Isoamylase_N_term Isoa 38.4 44 0.00094 25.7 3.5 23 43-65 48-70 (119)
159 cd02856 Glycogen_debranching_e 38.3 46 0.00099 24.8 3.5 24 42-65 43-66 (103)
160 PF10333 Pga1: GPI-Mannosyltra 36.0 62 0.0013 27.2 4.2 34 41-74 61-94 (180)
161 cd02853 MTHase_N_term Maltooli 35.1 52 0.0011 23.5 3.3 23 42-65 38-60 (85)
162 PRK11439 pphA serine/threonine 34.4 34 0.00073 29.6 2.6 28 264-299 179-206 (218)
163 cd02860 Pullulanase_N_term Pul 34.3 53 0.0012 24.2 3.3 25 41-65 44-68 (100)
164 PRK00207 sulfur transfer compl 30.8 2.2E+02 0.0048 22.3 6.4 63 207-273 18-81 (128)
165 TIGR03000 plancto_dom_1 Planct 29.8 1.2E+02 0.0026 21.4 4.1 26 41-66 24-49 (75)
166 PF10179 DUF2369: Uncharacteri 29.4 50 0.0011 30.1 2.8 20 46-65 15-34 (300)
167 PF09949 DUF2183: Uncharacteri 29.3 88 0.0019 23.4 3.7 27 81-109 64-90 (100)
168 TIGR03012 sulf_tusD_dsrE sulfu 28.9 2.7E+02 0.006 21.6 6.7 61 208-272 18-79 (127)
169 cd04502 SGNH_hydrolase_like_7 26.2 2.1E+02 0.0045 23.1 6.0 11 105-115 48-58 (171)
170 cd02850 Cellulase_N_term Cellu 24.0 1.4E+02 0.0031 21.4 4.0 24 42-65 54-78 (86)
171 PRK11449 putative deoxyribonuc 23.7 73 0.0016 28.4 2.8 141 97-279 22-162 (258)
172 PF10179 DUF2369: Uncharacteri 22.8 77 0.0017 28.9 2.8 20 47-66 261-280 (300)
173 PF07353 Uroplakin_II: Uroplak 22.8 69 0.0015 26.1 2.1 18 45-62 101-118 (184)
174 cd06533 Glyco_transf_WecG_TagA 22.4 3E+02 0.0066 22.6 6.1 51 207-271 56-106 (171)
175 PRK10425 DNase TatD; Provision 22.3 78 0.0017 28.2 2.7 140 97-279 18-157 (258)
176 cd07423 MPP_PrpE Bacillus subt 22.1 84 0.0018 27.4 2.9 35 81-115 38-75 (234)
177 PF02922 CBM_48: Carbohydrate- 21.9 1.1E+02 0.0023 21.5 3.0 25 42-66 47-73 (85)
178 COG1922 WecG Teichoic acid bio 21.1 2.6E+02 0.0057 24.9 5.7 51 207-272 118-169 (253)
179 PF01764 Lipase_3: Lipase (cla 20.8 1.2E+02 0.0026 23.5 3.3 25 251-275 49-74 (140)
180 PF00072 Response_reg: Respons 20.6 2.1E+02 0.0046 20.7 4.6 52 96-152 32-83 (112)
181 TIGR03487 cas_csp2 CRISPR-asso 20.3 2.4E+02 0.0051 25.7 5.2 66 41-118 145-212 (489)
No 1
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=1.3e-76 Score=561.23 Aligned_cols=369 Identities=68% Similarity=1.275 Sum_probs=327.8
Q ss_pred CEEEEEeCCCCCCEEEEeccCCCCCceEeeeeEEEee-eecccceEEEEEeCCCCCCCEEEEEeCCC-CCCeeEEECCCC
Q 017588 1 MRLSWITENSSPATVKYGTSPGVYDNSANGTTSSYHY-VLYKSGEIHDVVVGPLKPNTVYYYRCGPD-SAQERSFKTPPA 78 (369)
Q Consensus 1 m~v~W~t~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~t~Y~Y~v~~~-~s~~~~F~t~~~ 78 (369)
|+|+|.|..+..+.|+||++++.++.++.+++++|.. ....++++|+|+|+||+|+|+|+|||+.+ .++.++|+|+|.
T Consensus 57 m~V~W~T~~~~~~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 57 MRISWITQDSIPPSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGPSSTQEFSFRTPPS 136 (427)
T ss_pred EEEEEECCCCCCCEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCCCCccceEEECCCC
Confidence 8999999998889999999998899999888777764 22457899999999999999999999975 578899999998
Q ss_pred CCCeEEEEEeeCCCCCCcHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCcc
Q 017588 79 QLPIKFAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPII 158 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~ 158 (369)
..+++|+++||+|.......+++.+.+.+|||||++||++|.+..+..|+.|.+.++++...+|+|+++||||....+..
T Consensus 137 ~~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~ 216 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPIL 216 (427)
T ss_pred CCCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccccc
Confidence 88999999999998777778889998899999999999999888788999999999999888999999999999654322
Q ss_pred ccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccc
Q 017588 159 HSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYN 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~ 238 (369)
....+..|..+|.||..+.+...+.||+|++|++|||+||++.++....+|++||+++|+++++++.+|+||++|+|+|+
T Consensus 217 ~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~ 296 (427)
T PLN02533 217 HPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYN 296 (427)
T ss_pred cCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeee
Confidence 23467788899999987656667899999999999999999988878899999999999998776789999999999998
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCCCCccccCCCCCCCce
Q 017588 239 TNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNREGLASRFMNPQPAIS 318 (369)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~ 318 (369)
+...+.+......+++.|+++|.+++||++|+||.|.|+|+.|+++++.+++|++||++|+||+.+++...+..++|+|+
T Consensus 297 s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s 376 (427)
T PLN02533 297 SNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDIS 376 (427)
T ss_pred cccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCce
Confidence 76544333222357889999999999999999999999999999999999999999999999999887666777899999
Q ss_pred eeEecccceEEEEEEeCceEEEEEEEeCCCCCeeeEEEEEEecCCCCCCCC
Q 017588 319 VFREASFGHGQLEVVNATHAQWTWHRNDDDKPIASDSIWLRSLTSDPTCKL 369 (369)
Q Consensus 319 ~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~ 369 (369)
+|+..+|||++|++.|.++++|+|+++++++.++.|+|||.|....+-|++
T Consensus 377 ~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~~~~~~ 427 (427)
T PLN02533 377 LFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLTEPGCNI 427 (427)
T ss_pred eEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccCCCccCC
Confidence 999999999999999999999999999999878999999999999999974
No 2
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-72 Score=510.66 Aligned_cols=363 Identities=45% Similarity=0.719 Sum_probs=314.2
Q ss_pred CEEEEEeCCCCCCEEEEeccCCCCC-----ceEeeeeEEEeeeecccceEEEEEeCCCCCCCEEEEEeCCC--CCCeeEE
Q 017588 1 MRLSWITENSSPATVKYGTSPGVYD-----NSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVYYYRCGPD--SAQERSF 73 (369)
Q Consensus 1 m~v~W~t~~~~~~~v~y~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~~~--~s~~~~F 73 (369)
|+|+|.|.......|+||+..+... ..+.+.+..+.......+++|+|+|++|+|+|+|+|+|+++ +|+.|+|
T Consensus 59 m~VswvT~~~~~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~~wS~~f~F 138 (452)
T KOG1378|consen 59 MRVSWVTGDGEENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTRYYYQVGSDLKWSEIFSF 138 (452)
T ss_pred EEEEEeCCCCCCceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCCceEEEEeCCCCCcccceEe
Confidence 8999999998779999998755422 22333333333333578999999999999999999999998 5899999
Q ss_pred ECCCC-CCCeEEEEEeeCCCCCCcHHHHHHHHhc-CCCeEEeccccCCCCCCh-HHHHHHHHhhHhhhcCCcEEEccCCC
Q 017588 74 KTPPA-QLPIKFAIVGDLGQTGWTNSTLQHVAKS-NYDMLLLPGDLSYADLDQ-PLWDSFGRMVEPLASQRPWMVTQGNH 150 (369)
Q Consensus 74 ~t~~~-~~~~~f~~~gD~~~~~~~~~~~~~i~~~-~~d~vl~~GD~~~~~~~~-~~~~~~~~~~~~l~~~~P~~~v~GNH 150 (369)
+|+|. ..+.+|+++||+|........+...... ++|+||+.|||+|+++.. .+||.|.++++++++.+|+|++.|||
T Consensus 139 ~t~p~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNH 218 (452)
T KOG1378|consen 139 KTPPGQDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNH 218 (452)
T ss_pred ECCCCccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccc
Confidence 99995 5899999999999888776666665544 599999999999999887 59999999999999999999999999
Q ss_pred CCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC--CCChhHHHHHHHHhccccCCCCCeE
Q 017588 151 EIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF--DQNSDQYKWLEADLNKVDRGKTPWI 228 (369)
Q Consensus 151 D~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~--~~~~~q~~Wl~~~L~~~~~~~~~~~ 228 (369)
|.+..+. ..|..|..+|.||.+...+..+.||||++|++|||+|+|+.++ ....+|++||+++|+++++++.||+
T Consensus 219 E~d~~~~---~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWl 295 (452)
T KOG1378|consen 219 EIDWPPQ---PCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWL 295 (452)
T ss_pred cccCCCc---ccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeE
Confidence 9975544 1689999999999988777778999999999999999998875 3468999999999999998558999
Q ss_pred EEEeccCccccCCC-CCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCcc----------CCCCceEEEE
Q 017588 229 VVLIHAPWYNTNTA-HQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKP----------DNCGPVHITI 297 (369)
Q Consensus 229 iv~~H~P~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~----------~~~g~~~i~~ 297 (369)
|++.|.|+|++... +..++....++..|+++|.+++||++|.||.|.|||++|+++.+. ++++|+||++
T Consensus 296 Iv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~ 375 (452)
T KOG1378|consen 296 IVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITV 375 (452)
T ss_pred EEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEE
Confidence 99999999998775 555555556788999999999999999999999999999998764 7899999999
Q ss_pred CCCCCCCCccccCCCCCCCceeeEecccceEEEEEEeCceEEEEEEEeCCCCCeeeEEEEEEecCCCCCC
Q 017588 298 GDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQWTWHRNDDDKPIASDSIWLRSLTSDPTC 367 (369)
Q Consensus 298 G~gG~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~ 367 (369)
|+||+.+++.. +..++|+|++||.++|||++|++.|.||+.|.++++.|++.++.|+|||+|+..++-|
T Consensus 376 G~~G~~e~~~~-~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~ 444 (452)
T KOG1378|consen 376 GDGGNHEHLDP-FSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVV 444 (452)
T ss_pred ccCCcccccCc-ccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCcccc
Confidence 99999988754 4458999999999999999999999999999999998888889999999999876544
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.4e-48 Score=357.57 Aligned_cols=277 Identities=50% Similarity=0.829 Sum_probs=219.4
Q ss_pred CCCeEEEEEeeCCCC-CCcHHHHHHHHh--cCCCeEEeccccCCCCCCh--HHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 79 QLPIKFAIVGDLGQT-GWTNSTLQHVAK--SNYDMLLLPGDLSYADLDQ--PLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~-~~~~~~~~~i~~--~~~d~vl~~GD~~~~~~~~--~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
..++||+++||+|.. .....+++.+.+ .+|||||++||++|..+.. .+|+.|++.++++...+|+++++||||..
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 468999999999973 445778888766 7899999999999877654 78999999999998889999999999995
Q ss_pred CCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC---CCChhHHHHHHHHhccccCCCCCeEEE
Q 017588 154 KLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF---DQNSDQYKWLEADLNKVDRGKTPWIVV 230 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~---~~~~~q~~Wl~~~L~~~~~~~~~~~iv 230 (369)
.... ......+..++.++........+.||+|++|+++||+|||.... ....+|++||+++|+++++.+.+|+||
T Consensus 82 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv 159 (294)
T cd00839 82 YNFS--FYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIV 159 (294)
T ss_pred cCCC--CcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEE
Confidence 4322 10111111112233322333457899999999999999998654 457899999999999986656789999
Q ss_pred EeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCc--------cCCCCceEEEECCCCC
Q 017588 231 LIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGK--------PDNCGPVHITIGDGGN 302 (369)
Q Consensus 231 ~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~--------~~~~g~~~i~~G~gG~ 302 (369)
++|+|+++..............++.|.+++++++|+++|+||.|.|+|+.|+++++ .+++|++||++|+||+
T Consensus 160 ~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~ 239 (294)
T cd00839 160 MGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGN 239 (294)
T ss_pred EeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCcc
Confidence 99999998765432211123678899999999999999999999999999998754 3578999999999999
Q ss_pred CCCccccCCCCCCCceeeEecccceEEEEEEeCceEEEEEEEeCCCCCeeeEEEEEEe
Q 017588 303 REGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQWTWHRNDDDKPIASDSIWLRS 360 (369)
Q Consensus 303 ~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 360 (369)
........ .+.++|++++...+||++|++.++++|.++|+++.+|+ |+|+|||.|
T Consensus 240 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~--v~D~f~i~k 294 (294)
T cd00839 240 DEGLDPFS-APPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGV--VIDSFWIIK 294 (294)
T ss_pred ccCcCccc-CCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCe--EEEEEEEeC
Confidence 86542222 23468899999999999999998889999999988898 999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=2e-36 Score=277.48 Aligned_cols=261 Identities=19% Similarity=0.328 Sum_probs=190.0
Q ss_pred EECCCC-CCCeEEEEEeeCCCCCCcHHHHHH-H----HhcCCCeEEeccccCCCCCC---hHHHHH-HHHhhHhhh--cC
Q 017588 73 FKTPPA-QLPIKFAIVGDLGQTGWTNSTLQH-V----AKSNYDMLLLPGDLSYADLD---QPLWDS-FGRMVEPLA--SQ 140 (369)
Q Consensus 73 F~t~~~-~~~~~f~~~gD~~~~~~~~~~~~~-i----~~~~~d~vl~~GD~~~~~~~---~~~~~~-~~~~~~~l~--~~ 140 (369)
|.+... .+.++|+++||+|.+...+..+++ | ++.++||||.+||+++.+.. +++|.. |.+...... ..
T Consensus 17 ~~~~~~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~ 96 (394)
T PTZ00422 17 FISSYSVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQ 96 (394)
T ss_pred EEeecccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhC
Confidence 443333 789999999999976666555443 3 26789999999999854322 567765 444444432 36
Q ss_pred CcEEEccCCCCCCCCCcccccccc------------------ccccccccCcCCCCCCCceeEEE----Ee---------
Q 017588 141 RPWMVTQGNHEIEKLPIIHSTKFT------------------SYNARWRMPFEESGSNSNLYYSF----DA--------- 189 (369)
Q Consensus 141 ~P~~~v~GNHD~~~~~~~~~~~~~------------------~~~~~~~~p~~~~~~~~~~~ys~----~~--------- 189 (369)
+||++++||||+..+...+...+. ....+|.|| +.||.+ ..
T Consensus 97 ~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP--------~~yY~~~~~f~~~~~~~~~~~ 168 (394)
T PTZ00422 97 IPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMP--------NYWYHYFTHFTDTSGPSLLKS 168 (394)
T ss_pred CCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCC--------chhheeeeeeecccccccccc
Confidence 999999999999654432111111 113578888 467754 21
Q ss_pred ----CcEEEEEecCCCC-----C-CCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHH
Q 017588 190 ----AGVHVVMLGSYTD-----F-DQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGL 259 (369)
Q Consensus 190 ----g~~~~i~lds~~~-----~-~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l 259 (369)
..+.||++||..- + .....|++||+++|+.+.. ..+|+||++|||+|+.+.. .+. ..++..|+||
T Consensus 169 ~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k-~a~WkIVvGHhPIySsG~h-g~~---~~L~~~L~PL 243 (394)
T PTZ00422 169 GHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPK-IADYIIVVGDKPIYSSGSS-KGD---SYLSYYLLPL 243 (394)
T ss_pred cCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhcc-CCCeEEEEecCceeecCCC-CCC---HHHHHHHHHH
Confidence 1289999999532 1 1246789999999975543 6789999999999998752 222 2578899999
Q ss_pred HHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCCCCccccCCCCCCCceeeEecccceEEEEEEeCceEE
Q 017588 260 IHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQ 339 (369)
Q Consensus 260 ~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~ 339 (369)
|++|+||++|+||+|++|+.. ++++.||++|+||...+.. . ...+++.|.....||..+++ +++.++
T Consensus 244 L~ky~VdlYisGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~~---~-~~~~~s~F~~~~~GF~~~~l-~~~~l~ 310 (394)
T PTZ00422 244 LKDAQVDLYISGYDRNMEVLT--------DEGTAHINCGSGGNSGRKS---I-MKNSKSLFYSEDIGFCIHEL-NAEGMV 310 (394)
T ss_pred HHHcCcCEEEEccccceEEec--------CCCceEEEeCccccccCCC---C-CCCCCcceecCCCCEEEEEE-ecCEEE
Confidence 999999999999999999986 4689999999998864321 1 22345788888899999997 567899
Q ss_pred EEEEEeCCCCCeeeEEEEEEec
Q 017588 340 WTWHRNDDDKPIASDSIWLRSL 361 (369)
Q Consensus 340 ~~~~~~~~g~~~~~d~~~~~~~ 361 (369)
++|+...+|+ +++++++.+.
T Consensus 311 ~~fid~~~Gk--vL~~~~~~~~ 330 (394)
T PTZ00422 311 TKFVSGNTGE--VLYTHKQPLK 330 (394)
T ss_pred EEEEeCCCCc--EEEEeeeccc
Confidence 9999767898 9999988665
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=3.8e-34 Score=259.85 Aligned_cols=243 Identities=21% Similarity=0.368 Sum_probs=172.3
Q ss_pred eEEEEEeeCCCC-CCcH-HHH---H-HHHhcCCCeEEeccccCCCCCC----hHHH-HHHHHhhHhhhcCCcEEEccCCC
Q 017588 82 IKFAIVGDLGQT-GWTN-STL---Q-HVAKSNYDMLLLPGDLSYADLD----QPLW-DSFGRMVEPLASQRPWMVTQGNH 150 (369)
Q Consensus 82 ~~f~~~gD~~~~-~~~~-~~~---~-~i~~~~~d~vl~~GD~~~~~~~----~~~~-~~~~~~~~~l~~~~P~~~v~GNH 150 (369)
++|+++||+|.. ...+ ++. . .+.+.+|||||++||++|.++. ...| +.|.+.+..+..++|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 489999999976 2322 222 2 2235799999999999987653 2334 34555555444579999999999
Q ss_pred CCCCCCccccccccc--cccccccCcCCCCCCCceeEEEEeC------cEEEEEecCCCCC---------------CCCh
Q 017588 151 EIEKLPIIHSTKFTS--YNARWRMPFEESGSNSNLYYSFDAA------GVHVVMLGSYTDF---------------DQNS 207 (369)
Q Consensus 151 D~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~ys~~~g------~~~~i~lds~~~~---------------~~~~ 207 (369)
|+...... ...+.. +..+|.+| ..||+++++ +++||+|||.... ....
T Consensus 81 D~~~~~~~-~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~ 151 (277)
T cd07378 81 DYSGNVSA-QIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAE 151 (277)
T ss_pred ccCCCchh-eeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHH
Confidence 99532210 001111 12223333 579999988 7999999996431 1357
Q ss_pred hHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCcc
Q 017588 208 DQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKP 287 (369)
Q Consensus 208 ~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~ 287 (369)
+|++||++.|+++.. +|+||++|+|+++..... .. ...++.|.+++++++|+++|+||.|.+++..+.
T Consensus 152 ~Q~~wL~~~L~~~~~---~~~iv~~H~P~~~~~~~~-~~---~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~----- 219 (277)
T cd07378 152 EQLAWLEKTLAASTA---DWKIVVGHHPIYSSGEHG-PT---SCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDD----- 219 (277)
T ss_pred HHHHHHHHHHHhcCC---CeEEEEeCccceeCCCCC-Cc---HHHHHHHHHHHHHcCCCEEEeCCcccceeeecC-----
Confidence 899999999998743 789999999998764322 11 256889999999999999999999999988731
Q ss_pred CCCCceEEEECCCCCCCCccccCCCCCCCceeeEecccceEEEEEEeCceEEEEEEEeCCC
Q 017588 288 DNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQWTWHRNDDD 348 (369)
Q Consensus 288 ~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g 348 (369)
..++.||++|+||...+.........|.|..++....||.+|+|.+ +.++++|+. .+|
T Consensus 220 -~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~-~~g 277 (277)
T cd07378 220 -GSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYD-ADG 277 (277)
T ss_pred -CCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec-CEEEEEEEC-CCC
Confidence 2599999999988875543222222345678888899999999964 589999995 444
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=3.8e-30 Score=231.53 Aligned_cols=229 Identities=20% Similarity=0.297 Sum_probs=162.3
Q ss_pred CCCeEEEEEeeCCCCCC--c---------------HHHHHHHHhc--CCCeEEeccccCCCCCCh----HHHHHHHHhhH
Q 017588 79 QLPIKFAIVGDLGQTGW--T---------------NSTLQHVAKS--NYDMLLLPGDLSYADLDQ----PLWDSFGRMVE 135 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~--~---------------~~~~~~i~~~--~~d~vl~~GD~~~~~~~~----~~~~~~~~~~~ 135 (369)
..+++|+++||+|.+.. . +++++.+.+. +||+||++||+++.+... .+|+.+.+.++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 36899999999997731 1 2344555555 999999999999876543 34566667777
Q ss_pred hhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC------CCChhH
Q 017588 136 PLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF------DQNSDQ 209 (369)
Q Consensus 136 ~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~------~~~~~q 209 (369)
.+...+|+++++||||....+. .+.+..|...| +..+|++++++++||+|||.... ....+|
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~--~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~q 149 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT--EESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQ 149 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC--hhHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHHH
Confidence 6655799999999999953322 11222232222 24689999999999999995422 235789
Q ss_pred HHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCC--cchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCcc
Q 017588 210 YKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGE--VESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKP 287 (369)
Q Consensus 210 ~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~ 287 (369)
++||+++|+++++.+.+++||++|+|++......... ......+..+.+++++++|+++||||.|......
T Consensus 150 l~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~------- 222 (262)
T cd07395 150 DVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR------- 222 (262)
T ss_pred HHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE-------
Confidence 9999999999863345679999999998644321111 1113577899999999999999999999987644
Q ss_pred CCCCceEEEECCCCCCCCccccCCCCCCCceeeEecccceEEEEEEeCceEEEEEEE
Q 017588 288 DNCGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQWTWHR 344 (369)
Q Consensus 288 ~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~ 344 (369)
-.|+.+++++++|... . + ...||.++++.. ..++++|+.
T Consensus 223 -~~g~~~~~~~~~~~~~------~-~---------~~~g~~~~~v~~-~~~~~~~~~ 261 (262)
T cd07395 223 -YGGLEMVVTSAIGAQL------G-N---------DKSGLRIVKVTE-DKIVHEYYS 261 (262)
T ss_pred -ECCEEEEEcCceeccc------C-C---------CCCCcEEEEECC-Cceeeeeee
Confidence 2478888888766531 1 1 136899999954 457888874
No 7
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-27 Score=200.43 Aligned_cols=257 Identities=20% Similarity=0.335 Sum_probs=163.0
Q ss_pred CCCeEEEEEeeCCCCCC-cHHHHH-HH----HhcCCCeEEeccccCCCCCChH----HHH-HHHHhhHhhhcCCcEEEcc
Q 017588 79 QLPIKFAIVGDLGQTGW-TNSTLQ-HV----AKSNYDMLLLPGDLSYADLDQP----LWD-SFGRMVEPLASQRPWMVTQ 147 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~-~~~~~~-~i----~~~~~d~vl~~GD~~~~~~~~~----~~~-~~~~~~~~l~~~~P~~~v~ 147 (369)
++.++|+++||+|.... .+..++ ++ ...+.||||.+||++|..+... .++ .|.+....-.-+.|||.++
T Consensus 41 dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vl 120 (336)
T KOG2679|consen 41 DGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVL 120 (336)
T ss_pred CCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhc
Confidence 68999999999986543 232222 22 3578999999999999877633 332 2333322212247999999
Q ss_pred CCCCCCCCCccccc-cccccccccccCcCCCCCCCceeEE----EE--eCcEEEEEecCCCC-------CC-------CC
Q 017588 148 GNHEIEKLPIIHST-KFTSYNARWRMPFEESGSNSNLYYS----FD--AAGVHVVMLGSYTD-------FD-------QN 206 (369)
Q Consensus 148 GNHD~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ys----~~--~g~~~~i~lds~~~-------~~-------~~ 206 (369)
||||+..+...+-. -+.....+|..|. .+|. .+ .-++.++++|+... +. ..
T Consensus 121 GNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~ 192 (336)
T KOG2679|consen 121 GNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYL 192 (336)
T ss_pred cCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecccccccccccCChHHHHH
Confidence 99999655432111 1334445676664 2221 11 11244445444221 11 12
Q ss_pred hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCc
Q 017588 207 SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGK 286 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~ 286 (369)
..++.||+..|+++ .++|+||++|||+.+.+. | +... .+.+.|.|++++++||++++||+|+.|...-.
T Consensus 193 ~~~l~~le~~L~~S---~a~wkiVvGHh~i~S~~~-H-G~T~--eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~---- 261 (336)
T KOG2679|consen 193 RALLSWLEVALKAS---RAKWKIVVGHHPIKSAGH-H-GPTK--ELEKQLLPILEANGVDLYINGHDHCLQHISSP---- 261 (336)
T ss_pred HHHHHHHHHHHHHh---hcceEEEecccceehhhc-c-CChH--HHHHHHHHHHHhcCCcEEEecchhhhhhccCC----
Confidence 56789999999996 468999999999987653 2 3332 68899999999999999999999999987621
Q ss_pred cCCCCceEEEECCCCCCCCccccCC-CCCCCceeeEecccceEEEEEEeCceEEEEEEEeCCCCCeeeEEEEEEec
Q 017588 287 PDNCGPVHITIGDGGNREGLASRFM-NPQPAISVFREASFGHGQLEVVNATHAQWTWHRNDDDKPIASDSIWLRSL 361 (369)
Q Consensus 287 ~~~~g~~~i~~G~gG~~~~~~~~~~-~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~~~~~d~~~~~~~ 361 (369)
..++-|+++|+| +..+...+.. .-.|+.-.|.-..-||.-+++. ...+++.|++. .|+ +...-...|+
T Consensus 262 --e~~iqf~tSGag-Skaw~g~~~~~~~~p~~lkF~YdgqGfmsv~is-~~e~~vvfyD~-~G~--~Lhk~~t~kr 330 (336)
T KOG2679|consen 262 --ESGIQFVTSGAG-SKAWRGTDHNPEVNPKELKFYYDGQGFMSVEIS-HSEARVVFYDV-SGK--VLHKWSTSKR 330 (336)
T ss_pred --CCCeeEEeeCCc-ccccCCCccCCccChhheEEeeCCCceEEEEEe-cceeEEEEEec-cCc--eEEEeecccc
Confidence 346666777765 4433221222 1233333454445699999984 55799999984 666 4444444444
No 8
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.95 E-value=1.5e-25 Score=216.52 Aligned_cols=297 Identities=20% Similarity=0.307 Sum_probs=153.0
Q ss_pred cccceEEEEEeCCCCCCCEEEEEeCCC----CCCeeEEECCCC--CCCeEEEEEeeCCCCCCcHHHHHHHHh-cCCCeEE
Q 017588 40 YKSGEIHDVVVGPLKPNTVYYYRCGPD----SAQERSFKTPPA--QLPIKFAIVGDLGQTGWTNSTLQHVAK-SNYDMLL 112 (369)
Q Consensus 40 ~~~~~~~~~~l~~L~p~t~Y~Y~v~~~----~s~~~~F~t~~~--~~~~~f~~~gD~~~~~~~~~~~~~i~~-~~~d~vl 112 (369)
....+++++.|+||+|+|+|+||+..+ .+..++|+|+|. ..++||+++||.+.......+.+.+.+ .+|||+|
T Consensus 58 ~~~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 58 AERDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GGGTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-----EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred cCCCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCCceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 457899999999999999999999873 578899999986 357999999999865555778888877 6999999
Q ss_pred eccccCCCCCC---------------------------hHHHHHH--HHhhHhhhcCCcEEEccCCCCCCCCCcccc---
Q 017588 113 LPGDLSYADLD---------------------------QPLWDSF--GRMVEPLASQRPWMVTQGNHEIEKLPIIHS--- 160 (369)
Q Consensus 113 ~~GD~~~~~~~---------------------------~~~~~~~--~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~--- 160 (369)
++||.+|.+.. ...|..+ ...++.+.+.+|+++++.+||+.++.....
T Consensus 138 ~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~ 217 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAEN 217 (453)
T ss_dssp E-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-ST
T ss_pred EeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCcccc
Confidence 99999998742 0112211 134566677899999999999964322100
Q ss_pred -------------ccccccccccccCcCC---CCCCCceeEEEEeCc-EEEEEecCCCCCC-------------------
Q 017588 161 -------------TKFTSYNARWRMPFEE---SGSNSNLYYSFDAAG-VHVVMLGSYTDFD------------------- 204 (369)
Q Consensus 161 -------------~~~~~~~~~~~~p~~~---~~~~~~~~ys~~~g~-~~~i~lds~~~~~------------------- 204 (369)
..+..|.++ +|... .......|++|.+|+ +.|++||++....
T Consensus 218 ~~~~~~~~~~~~~~a~~ay~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~ 295 (453)
T PF09423_consen 218 HQDTSGDFQDRRRAAYQAYFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSR 295 (453)
T ss_dssp T---HHHHHHHHHHHHHHHHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT-
T ss_pred ccccccchHHHHHHHHHHHHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCcc
Confidence 011122222 22211 112346789999999 9999999964211
Q ss_pred --CChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCC---------CCCCcchHHHHHHHHHHHHhcCce--EEEec
Q 017588 205 --QNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTA---------HQGEVESEGMRKAMEGLIHQARVG--VVFAG 271 (369)
Q Consensus 205 --~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~---------~~~~~~~~~~~~~l~~l~~~~~v~--lvl~G 271 (369)
.+.+|++||++.|++.. ++|+||+.-.|+...... ...+......|+.|.+++++.++. ++|+|
T Consensus 296 ~mLG~~Q~~wL~~~L~~s~---a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSG 372 (453)
T PF09423_consen 296 TMLGEEQWDWLEDWLASSQ---ATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSG 372 (453)
T ss_dssp -SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-
T ss_pred CcCCHHHHHHHHHHHhcCC---CcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEec
Confidence 26899999999999863 689999998886443221 112223357899999999888664 89999
Q ss_pred ccccceeeeeccCCcc--CCC--CceEEEECCCCCCCC-c------cccCCCCCCCceeeEecccceEEEEEEeCceEEE
Q 017588 272 HVHAYERFTRVSNGKP--DNC--GPVHITIGDGGNREG-L------ASRFMNPQPAISVFREASFGHGQLEVVNATHAQW 340 (369)
Q Consensus 272 H~H~~~r~~~~~~~~~--~~~--g~~~i~~G~gG~~~~-~------~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~ 340 (369)
+.|............. ... -.+.+++++=.+... . .......+|...-.....+||..|++. ...++.
T Consensus 373 DvH~~~~~~~~~~~~~~~~~~~~~~~Ef~~s~vts~~~~~~~~~~~~~~~~~~np~~~~~~~~~~G~~~i~~~-~~~~~~ 451 (453)
T PF09423_consen 373 DVHASAASRIPPDDADPPDGPGSVGVEFTSSSVTSPGFGLGTSPALDRALDKANPHLKFADLRNFGYVEIDIT-PERVTA 451 (453)
T ss_dssp SSSSEEEEEEESSTT---TTS-EEEEEEE---SSTT-S-BSB-TTHHH-HHHH-TTEEEEE-B-EEEEEEEEE-TTEEEE
T ss_pred CcchheeeecccccccccCCCCCeEEEEECCCccCCCcccccchhhhhhhhhcCCceEEeECCCCcEEEEEEc-cceEEE
Confidence 9999776653332211 111 123344443211111 0 000111244423334467999999985 456776
Q ss_pred EE
Q 017588 341 TW 342 (369)
Q Consensus 341 ~~ 342 (369)
+|
T Consensus 452 ~~ 453 (453)
T PF09423_consen 452 EW 453 (453)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.94 E-value=4.8e-26 Score=202.37 Aligned_cols=217 Identities=19% Similarity=0.248 Sum_probs=151.1
Q ss_pred EEEEEeeCCCCCCc-------------HHHHHHHHhc--CCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEcc
Q 017588 83 KFAIVGDLGQTGWT-------------NSTLQHVAKS--NYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQ 147 (369)
Q Consensus 83 ~f~~~gD~~~~~~~-------------~~~~~~i~~~--~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~ 147 (369)
||+++||+|.+... +++++.+++. +||+||++||+++.+. ...|+.+.+.++++ .+|++.++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~l~~~--~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-PESYERLRELLAAL--PIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-HHHHHHHHHHHhhc--CCCEEEeC
Confidence 68999999987531 3455555555 8999999999998754 45667777777766 69999999
Q ss_pred CCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC----CCChhHHHHHHHHhccccCC
Q 017588 148 GNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF----DQNSDQYKWLEADLNKVDRG 223 (369)
Q Consensus 148 GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~----~~~~~q~~Wl~~~L~~~~~~ 223 (369)
||||... .+.. .+..... .....+|+++.++++||+||+.... ....+|++||++.|++...
T Consensus 78 GNHD~~~-------~~~~---~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~~- 143 (240)
T cd07402 78 GNHDDRA-------AMRA---VFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAPD- 143 (240)
T ss_pred CCCCCHH-------HHHH---hhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCCC-
Confidence 9999831 1111 1111000 1235788999999999999986432 1357899999999998752
Q ss_pred CCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-CceEEEecccccceeeeeccCCccCCCCceEEEECCCCC
Q 017588 224 KTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGN 302 (369)
Q Consensus 224 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~ 302 (369)
+++|+++|+|++.......... ....++.+.++++++ +++++|+||.|...... -+|+.++++|+.|.
T Consensus 144 --~~~il~~H~pp~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~--------~~g~~~~~~gs~~~ 212 (240)
T cd07402 144 --KPTLVFLHHPPFPVGIAWMDAI-GLRNAEALAAVLARHPNVRAILCGHVHRPIDGS--------WGGIPLLTAPSTCH 212 (240)
T ss_pred --CCEEEEECCCCccCCchhhhhh-hCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE--------ECCEEEEEcCccee
Confidence 3589999999876533111111 113467899999999 99999999999976654 36899999998776
Q ss_pred CCCccccCCCCCCCceeeEecccceEEEEEEe
Q 017588 303 REGLASRFMNPQPAISVFREASFGHGQLEVVN 334 (369)
Q Consensus 303 ~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~ 334 (369)
.-. ..+....+.....||..+.+.+
T Consensus 213 ~~~-------~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 213 QFA-------PDLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred eec-------CCCCcccccccCCCCcEEEEec
Confidence 521 1122233344467888888754
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.94 E-value=5.9e-26 Score=204.41 Aligned_cols=193 Identities=18% Similarity=0.274 Sum_probs=136.6
Q ss_pred eEEEEEeeCCCCCCc--------------HHHHHHHHhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhhcCCcEEE
Q 017588 82 IKFAIVGDLGQTGWT--------------NSTLQHVAKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLASQRPWMV 145 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~--------------~~~~~~i~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~~~~P~~~ 145 (369)
|||+++||+|..... .++++.+++.+||+||++||+++.+.. ...|+.+.+.++.+ .+|+++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l--~~p~~~ 78 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRL--KGPVHH 78 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhc--CCCEEE
Confidence 699999999955421 345666777789999999999976653 24566666666665 589999
Q ss_pred ccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCC-----------------------
Q 017588 146 TQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTD----------------------- 202 (369)
Q Consensus 146 v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~----------------------- 202 (369)
++||||...... .. +...+ . ...+..||+|+.++++||+||+...
T Consensus 79 v~GNHD~~~~~~----~~--~~~~~--~----~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (267)
T cd07396 79 VLGNHDLYNPSR----EY--LLLYT--L----LGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGL 146 (267)
T ss_pred ecCccccccccH----hh--hhccc--c----cCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhh
Confidence 999999953211 00 00000 0 1123579999999999999998531
Q ss_pred -----------CCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-CceEEEe
Q 017588 203 -----------FDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVGVVFA 270 (369)
Q Consensus 203 -----------~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~ 270 (369)
.....+|++||++.|+++.. +...+||++|+|++...... ......++.+.++++++ +|+++|+
T Consensus 147 ~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~---~~~~~~~~~~~~ll~~~~~V~~v~~ 222 (267)
T cd07396 147 YLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP---HGLLWNHEEVLSILRAYGCVKACIS 222 (267)
T ss_pred hccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc---cccccCHHHHHHHHHhCCCEEEEEc
Confidence 12347899999999998754 23458999999987654311 11112457889999996 8999999
Q ss_pred cccccceeeeeccCCccCCCCceEEEECCC
Q 017588 271 GHVHAYERFTRVSNGKPDNCGPVHITIGDG 300 (369)
Q Consensus 271 GH~H~~~r~~~~~~~~~~~~g~~~i~~G~g 300 (369)
||+|.++... .+|+.|+++|+-
T Consensus 223 GH~H~~~~~~--------~~gi~~~~~~a~ 244 (267)
T cd07396 223 GHDHEGGYAQ--------RHGIHFLTLEGM 244 (267)
T ss_pred CCcCCCCccc--------cCCeeEEEechh
Confidence 9999987554 468999998864
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.93 E-value=1.2e-24 Score=196.79 Aligned_cols=240 Identities=16% Similarity=0.209 Sum_probs=153.9
Q ss_pred EECCCC-CCCeEEEEEeeCCCCCC-------------cHHHHHHHHh--cCCCeEEeccccCCCCCChHHHHHHHHhhHh
Q 017588 73 FKTPPA-QLPIKFAIVGDLGQTGW-------------TNSTLQHVAK--SNYDMLLLPGDLSYADLDQPLWDSFGRMVEP 136 (369)
Q Consensus 73 F~t~~~-~~~~~f~~~gD~~~~~~-------------~~~~~~~i~~--~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~ 136 (369)
.+|.+. ..+++|+.++|+|.... .+++++.+++ .+|||||++||+++.+. .+.++.+.+.+++
T Consensus 5 ~~~~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-~~~~~~~~~~l~~ 83 (275)
T PRK11148 5 LTLPLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-SEAYQHFAEGIAP 83 (275)
T ss_pred cccccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-HHHHHHHHHHHhh
Confidence 455554 57899999999996321 1345555543 47999999999998654 4566777777776
Q ss_pred hhcCCcEEEccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC----CCChhHHHH
Q 017588 137 LASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF----DQNSDQYKW 212 (369)
Q Consensus 137 l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~----~~~~~q~~W 212 (369)
+ .+|++.++||||... .+..+.....+ ...++.+..++++||+||+.... ..+.+|++|
T Consensus 84 l--~~Pv~~v~GNHD~~~-------~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~w 146 (275)
T PRK11148 84 L--RKPCVWLPGNHDFQP-------AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEW 146 (275)
T ss_pred c--CCcEEEeCCCCCChH-------HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHH
Confidence 6 589999999999831 11111111011 12233344556999999996421 235799999
Q ss_pred HHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-CceEEEecccccceeeeeccCCccCCCC
Q 017588 213 LEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVGVVFAGHVHAYERFTRVSNGKPDNCG 291 (369)
Q Consensus 213 l~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~~~r~~~~~~~~~~~~g 291 (369)
|++.|+++.. +..||++|||+......+..... ....+.+.++++++ +|+++||||+|...... -+|
T Consensus 147 L~~~L~~~~~---~~~vv~~hH~P~~~~~~~~d~~~-l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~--------~~g 214 (275)
T PRK11148 147 LERKLADAPE---RHTLVLLHHHPLPAGCAWLDQHS-LRNAHELAEVLAKFPNVKAILCGHIHQELDLD--------WNG 214 (275)
T ss_pred HHHHHhhCCC---CCeEEEEcCCCCCCCcchhhccC-CCCHHHHHHHHhcCCCceEEEecccChHHhce--------ECC
Confidence 9999998743 23667777665544332211111 13457899999998 89999999999865433 358
Q ss_pred ceEEEECCCCCCCCccccCCCCCCCceeeEecccceEEEEEEeCceEEEEEEEeCCCC
Q 017588 292 PVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQWTWHRNDDDK 349 (369)
Q Consensus 292 ~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~ 349 (369)
+.++++++.+..- ....++. .......||.++++.++..+..+.++..++.
T Consensus 215 i~~~~~ps~~~q~------~~~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~ 265 (275)
T PRK11148 215 RRLLATPSTCVQF------KPHCTNF-TLDTVAPGWRELELHADGSLETEVHRLADTE 265 (275)
T ss_pred EEEEEcCCCcCCc------CCCCCcc-ccccCCCcEEEEEEcCCCcEEEEEEEcCCCC
Confidence 8888877655431 1111111 1223346999999976666777777655443
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=1.2e-22 Score=181.48 Aligned_cols=185 Identities=15% Similarity=0.264 Sum_probs=124.4
Q ss_pred EEEEeeCCCCCCc--------HHHHHHHHhcCCCeEEeccccCCCCC--------ChHHHHHHHHhhHhhhc--CCcEEE
Q 017588 84 FAIVGDLGQTGWT--------NSTLQHVAKSNYDMLLLPGDLSYADL--------DQPLWDSFGRMVEPLAS--QRPWMV 145 (369)
Q Consensus 84 f~~~gD~~~~~~~--------~~~~~~i~~~~~d~vl~~GD~~~~~~--------~~~~~~~~~~~~~~l~~--~~P~~~ 145 (369)
|+.++|+|.+... ..+++.+++.+||+||++||+++... ...+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7899999986542 12345667889999999999997543 24568777776655432 489999
Q ss_pred ccCCCCCCCCCcccccccccccccc-ccCcCCCCCCCceeEEE--EeCcEEEEEecCCCC----------CCCChhHHHH
Q 017588 146 TQGNHEIEKLPIIHSTKFTSYNARW-RMPFEESGSNSNLYYSF--DAAGVHVVMLGSYTD----------FDQNSDQYKW 212 (369)
Q Consensus 146 v~GNHD~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~ys~--~~g~~~~i~lds~~~----------~~~~~~q~~W 212 (369)
++||||...... ......+..++ .... ....+|.+ +.|+++||+||+... .....+|++|
T Consensus 82 v~GNHD~~~~~~--~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~w 154 (256)
T cd07401 82 IRGNHDLFNIPS--LDSENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDR 154 (256)
T ss_pred eCCCCCcCCCCC--ccchhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHH
Confidence 999999953322 11121222111 1110 01233333 358999999999642 1235899999
Q ss_pred HHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeecc
Q 017588 213 LEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVS 283 (369)
Q Consensus 213 l~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~ 283 (369)
|++.|+++.+ .+++||++|+|++...... . .....+.+++++++|+++||||.|.+++..|+.
T Consensus 155 L~~~L~~~~~--~~~~IV~~HhP~~~~~~~~---~---~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 155 LEKELEKSTN--SNYTIWFGHYPTSTIISPS---A---KSSSKFKDLLKKYNVTAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHHHhccc--CCeEEEEEcccchhccCCC---c---chhHHHHHHHHhcCCcEEEeCCccCCCcceeee
Confidence 9999998654 4579999999986532211 1 122239999999999999999999999967654
No 13
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-22 Score=185.91 Aligned_cols=268 Identities=21% Similarity=0.318 Sum_probs=182.7
Q ss_pred EEEEEeCC--------CCCCEEEEeccCCCCCceEeeeeEEEeeeecccceEEEEEeCCCCCCCEEEEEeCCC--CCCee
Q 017588 2 RLSWITEN--------SSPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVYYYRCGPD--SAQER 71 (369)
Q Consensus 2 ~v~W~t~~--------~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~~~--~s~~~ 71 (369)
.|.|..-. +.+..+|+.+++...+....++... .....+.+++.+.||+|++.|+||+... .+..+
T Consensus 53 vviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p~~dhtv~v~~~gL~P~~~yfYRf~~~~~~spvG 128 (522)
T COG3540 53 VVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SPELDHTVHVDLRGLSPDQDYFYRFKAGDERSPVG 128 (522)
T ss_pred EEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccC----CcccCceEEEeccCCCCCceEEEEEeeCCcccccc
Confidence 36677666 4566677777765434443333211 1245788999999999999999999875 67899
Q ss_pred EEECCCC-CCCeEEEEEeeCCCCCC---cHHHHHHHHhcCCCeEEeccccCCCCCCh-----------------------
Q 017588 72 SFKTPPA-QLPIKFAIVGDLGQTGW---TNSTLQHVAKSNYDMLLLPGDLSYADLDQ----------------------- 124 (369)
Q Consensus 72 ~F~t~~~-~~~~~f~~~gD~~~~~~---~~~~~~~i~~~~~d~vl~~GD~~~~~~~~----------------------- 124 (369)
+|+|+|. ...++++.++|..+..+ .-.+.+.|.+.+|||+||+||.||..+..
T Consensus 129 rtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~ 208 (522)
T COG3540 129 RTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIE 208 (522)
T ss_pred ccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCccee
Confidence 9999998 67888888888755444 35678888899999999999999976541
Q ss_pred ------HHHHHH--HHhhHhhhcCCcEEEccCCCCCCCCCcc---------ccc--------cccccccccccCcCCCC-
Q 017588 125 ------PLWDSF--GRMVEPLASQRPWMVTQGNHEIEKLPII---------HST--------KFTSYNARWRMPFEESG- 178 (369)
Q Consensus 125 ------~~~~~~--~~~~~~l~~~~P~~~v~GNHD~~~~~~~---------~~~--------~~~~~~~~~~~p~~~~~- 178 (369)
.+|..+ ...++......||++.+.+||..++-.. ..+ ..+.|.+ .||-....
T Consensus 209 TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE--~mPiR~~~~ 286 (522)
T COG3540 209 TLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYE--HMPIRYSSL 286 (522)
T ss_pred eHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHHH--hCccccccC
Confidence 112111 1234555567999999999999643220 000 1123333 24433211
Q ss_pred -CCCceeEEEEeCc-EEEEEecCCCCC------C----------------CChhHHHHHHHHhccccCCCCCeEEEEecc
Q 017588 179 -SNSNLYYSFDAAG-VHVVMLGSYTDF------D----------------QNSDQYKWLEADLNKVDRGKTPWIVVLIHA 234 (369)
Q Consensus 179 -~~~~~~ys~~~g~-~~~i~lds~~~~------~----------------~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~ 234 (369)
.....|-+|.||+ +.|.+||++... + .+.+|.+||+..|..+ ++.|+|+..-.
T Consensus 287 p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S---katWnVia~q~ 363 (522)
T COG3540 287 PTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS---KATWNVIAQQM 363 (522)
T ss_pred CccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhc---chhhhhhhhhc
Confidence 1347899999999 789999985432 1 2689999999999985 67899998888
Q ss_pred Cccc----cC---CC----CCCCcchHHHHHHHHHHHHhcCce--EEEeccccccee
Q 017588 235 PWYN----TN---TA----HQGEVESEGMRKAMEGLIHQARVG--VVFAGHVHAYER 278 (369)
Q Consensus 235 P~~~----~~---~~----~~~~~~~~~~~~~l~~l~~~~~v~--lvl~GH~H~~~r 278 (369)
|+-. .. .. -.++......|+.|..+++..++. ++|+|++|....
T Consensus 364 ~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA 420 (522)
T COG3540 364 PLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWA 420 (522)
T ss_pred ceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHH
Confidence 8621 11 00 111222346789999999998765 899999996443
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.88 E-value=6.6e-22 Score=171.91 Aligned_cols=151 Identities=19% Similarity=0.289 Sum_probs=111.8
Q ss_pred eEEEEEeeCCCCCCc---------HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhh-cCCcEEEccCCCC
Q 017588 82 IKFAIVGDLGQTGWT---------NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLA-SQRPWMVTQGNHE 151 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~---------~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~-~~~P~~~v~GNHD 151 (369)
|+|++++|+|..... +.+++.+.+.+||+|+++||+++.+....+|+.+.+.++.+. ..+|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 689999999975431 223444456789999999999987765668988888888886 4699999999999
Q ss_pred CCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEE
Q 017588 152 IEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVL 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~ 231 (369)
. ++.+|+ ....+|++||++.|++.+. +++||+
T Consensus 81 ~-----------------------------------------~~~ld~----~~~~~ql~WL~~~L~~~~~---~~~iv~ 112 (214)
T cd07399 81 L-----------------------------------------VLALEF----GPRDEVLQWANEVLKKHPD---RPAILT 112 (214)
T ss_pred c-----------------------------------------hhhCCC----CCCHHHHHHHHHHHHHCCC---CCEEEE
Confidence 4 122222 1248999999999998643 348999
Q ss_pred eccCccccCCCCCCCc---chHHHHHHHHHHHHhc-CceEEEecccccceeee
Q 017588 232 IHAPWYNTNTAHQGEV---ESEGMRKAMEGLIHQA-RVGVVFAGHVHAYERFT 280 (369)
Q Consensus 232 ~H~P~~~~~~~~~~~~---~~~~~~~~l~~l~~~~-~v~lvl~GH~H~~~r~~ 280 (369)
+|+|++.......... .....++.|.++++++ +|+++||||.|.+.+..
T Consensus 113 ~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~ 165 (214)
T cd07399 113 THAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTT 165 (214)
T ss_pred ecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEE
Confidence 9999986543211110 0113456788999999 79999999999988766
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.85 E-value=3.2e-20 Score=170.04 Aligned_cols=190 Identities=21% Similarity=0.328 Sum_probs=126.8
Q ss_pred EEEeeCCCCCC---cHHHHHHHHhc--CCCeEEeccccCCCCCChH--------HHHHHHHhhHhhhcCCcEEEccCCCC
Q 017588 85 AIVGDLGQTGW---TNSTLQHVAKS--NYDMLLLPGDLSYADLDQP--------LWDSFGRMVEPLASQRPWMVTQGNHE 151 (369)
Q Consensus 85 ~~~gD~~~~~~---~~~~~~~i~~~--~~d~vl~~GD~~~~~~~~~--------~~~~~~~~~~~l~~~~P~~~v~GNHD 151 (369)
..+|+.++... .+++++.+++. +|||||++||++..+.... .+..+.+.++.....+|+++++||||
T Consensus 41 ~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD 120 (296)
T cd00842 41 GPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD 120 (296)
T ss_pred CCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 34566665443 24566677665 8999999999998765422 24445666777667899999999999
Q ss_pred CCCCCcccc-----ccccccccccc--cCcCCC-CCCCceeEEEE-eCcEEEEEecCCCCC-----------CCChhHHH
Q 017588 152 IEKLPIIHS-----TKFTSYNARWR--MPFEES-GSNSNLYYSFD-AAGVHVVMLGSYTDF-----------DQNSDQYK 211 (369)
Q Consensus 152 ~~~~~~~~~-----~~~~~~~~~~~--~p~~~~-~~~~~~~ys~~-~g~~~~i~lds~~~~-----------~~~~~q~~ 211 (369)
......... ..+..+...|. ++.... ....+.||++. .+++++|+|||.... .....|++
T Consensus 121 ~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~ 200 (296)
T cd00842 121 SYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQ 200 (296)
T ss_pred CCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHH
Confidence 954322111 01111222221 221111 11246889988 888999999995421 12478999
Q ss_pred HHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcC--ceEEEecccccceeee
Q 017588 212 WLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQAR--VGVVFAGHVHAYERFT 280 (369)
Q Consensus 212 Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvl~GH~H~~~r~~ 280 (369)
||+++|+++++.+ ..++|++|+|+........ ....+.+.++++++. |.++|+||+|..+...
T Consensus 201 WL~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~~-----~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 201 WLEDELQEAEQAG-EKVWIIGHIPPGVNSYDTL-----ENWSERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred HHHHHHHHHHHCC-CeEEEEeccCCCCcccccc-----hHHHHHHHHHHHHHHHhhheeeecccccceEEE
Confidence 9999999986533 3488999999876432211 246789999999996 7789999999977654
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.81 E-value=9.4e-19 Score=155.48 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=106.2
Q ss_pred hcCCCeEEeccccCCCCCC--hHHHHH----HHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCCCC
Q 017588 105 KSNYDMLLLPGDLSYADLD--QPLWDS----FGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESG 178 (369)
Q Consensus 105 ~~~~d~vl~~GD~~~~~~~--~~~~~~----~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~ 178 (369)
..+||+||++||+++.+.. ..+|.. |.+.+.++....|++.++||||+.............|.+.|.
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg------- 115 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYFG------- 115 (257)
T ss_pred hcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHhC-------
Confidence 4689999999999987643 344543 333333332347999999999985332211112334444442
Q ss_pred CCCceeEEEEeCcEEEEEecCCCCC-----CCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCc------
Q 017588 179 SNSNLYYSFDAAGVHVVMLGSYTDF-----DQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEV------ 247 (369)
Q Consensus 179 ~~~~~~ys~~~g~~~~i~lds~~~~-----~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~------ 247 (369)
..++++++|+++||+||+.... .....|.+||++.|+.... ..+ +||++|+|+|..... .++
T Consensus 116 ---~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~p-~ILl~H~Plyr~~~~--~cg~~re~~ 188 (257)
T cd08163 116 ---PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK-SKP-RILLTHVPLYRPPNT--SCGPLRESK 188 (257)
T ss_pred ---CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC-CCc-EEEEeccccccCCCC--CCCCccccC
Confidence 3468999999999999995321 2346789999999887644 334 899999999865431 111
Q ss_pred --------c-h--HHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 248 --------E-S--EGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 248 --------~-~--~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
. . ....+.-..++++.++.+||+||+|.|=...
T Consensus 189 ~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 189 TPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 0 0 0012344467777899999999999885554
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.79 E-value=8.8e-20 Score=153.35 Aligned_cols=190 Identities=19% Similarity=0.202 Sum_probs=102.1
Q ss_pred eEEEEEeeCCCCCCcH-----HHHHHHHhcCCCeEEeccccCCCCCChHHHHHHH-HhhHhhhcCCcEEEccCCCCCCCC
Q 017588 82 IKFAIVGDLGQTGWTN-----STLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFG-RMVEPLASQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~~-----~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~-~~~~~l~~~~P~~~v~GNHD~~~~ 155 (369)
+||+++||+|...... .........++|+||++||+++.+.....+.... ..........|+++++||||+...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 6999999999875533 2333445789999999999999887654443322 122334456999999999999532
Q ss_pred Ccccccccccccccc-ccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCC---hhHHHHHHHHhccccCCCCCeEEEE
Q 017588 156 PIIHSTKFTSYNARW-RMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQN---SDQYKWLEADLNKVDRGKTPWIVVL 231 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~---~~q~~Wl~~~L~~~~~~~~~~~iv~ 231 (369)
... .......... ...........+........................ ..+..|+...+... ..+++||+
T Consensus 81 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~ 155 (200)
T PF00149_consen 81 NSF--YGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAK---NDDPVIVF 155 (200)
T ss_dssp HHH--HHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEE---EESEEEEE
T ss_pred ccc--cccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccc---cccceeEE
Confidence 110 0000000000 000000000000001122222222222221111111 22333333333332 35689999
Q ss_pred eccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccc
Q 017588 232 IHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAY 276 (369)
Q Consensus 232 ~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~ 276 (369)
+|+|+++..............++.+..++++++|+++|+||+|.|
T Consensus 156 ~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 156 THHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp ESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred EecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 999998765432110000146788999999999999999999986
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.77 E-value=1.1e-17 Score=147.49 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=118.1
Q ss_pred EEEEeeCCCCC--------Cc---HHHHHHHHhc------CCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEc
Q 017588 84 FAIVGDLGQTG--------WT---NSTLQHVAKS------NYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVT 146 (369)
Q Consensus 84 f~~~gD~~~~~--------~~---~~~~~~i~~~------~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v 146 (369)
+.+++|.|... .. .+.++.+.+. +||+||++||+++.... .......+.++.+ ..|+++|
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~-~~~~~~l~~l~~l--~~~v~~V 77 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL-EEAKLDLAWIDAL--PGTKVLL 77 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh-HHHHHHHHHHHhC--CCCeEEE
Confidence 35789999762 22 3445554433 99999999999964432 2232333334443 3589999
Q ss_pred cCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCC----C---------C----CChhH
Q 017588 147 QGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTD----F---------D----QNSDQ 209 (369)
Q Consensus 147 ~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~----~---------~----~~~~q 209 (369)
+||||+... ....+.+.+ +.. +..-....++.++++.|++++.... + . ....|
T Consensus 78 ~GNHD~~~~------~~~~~~~~l--~~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
T cd07393 78 KGNHDYWWG------SASKLRKAL--EES--RLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERE 147 (232)
T ss_pred eCCccccCC------CHHHHHHHH--Hhc--CeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHH
Confidence 999998311 111111111 110 0000113445678899998763211 0 0 12468
Q ss_pred HHHHHHHhccccCC-CCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccC
Q 017588 210 YKWLEADLNKVDRG-KTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPD 288 (369)
Q Consensus 210 ~~Wl~~~L~~~~~~-~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~ 288 (369)
++||++.|+++... ...++|+++|+|++.... ..+.+.+++++++++++|+||+|..+...|+.. .
T Consensus 148 l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~----------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~---~ 214 (232)
T cd07393 148 LERLELSLKAAKKREKEKIKIVMLHYPPANENG----------DDSPISKLIEEYGVDICVYGHLHGVGRDRAING---E 214 (232)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC----------CHHHHHHHHHHcCCCEEEECCCCCCcccccccc---e
Confidence 99999999986432 224689999999876432 124667888999999999999999988776531 1
Q ss_pred CCCceEEEECCC
Q 017588 289 NCGPVHITIGDG 300 (369)
Q Consensus 289 ~~g~~~i~~G~g 300 (369)
-+|+.|.++.++
T Consensus 215 ~~gi~~~~~~~~ 226 (232)
T cd07393 215 RGGIRYQLVSAD 226 (232)
T ss_pred ECCEEEEEEcch
Confidence 357888887764
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.77 E-value=8.7e-18 Score=144.81 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=99.7
Q ss_pred CCeEEEEEeeCCCCCCc------------HHHHH-HHHhcCCCeEEeccccCCCCCChH-HHHHHHHhhHhhhc-CCcEE
Q 017588 80 LPIKFAIVGDLGQTGWT------------NSTLQ-HVAKSNYDMLLLPGDLSYADLDQP-LWDSFGRMVEPLAS-QRPWM 144 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~~------------~~~~~-~i~~~~~d~vl~~GD~~~~~~~~~-~~~~~~~~~~~l~~-~~P~~ 144 (369)
+++||++++|+|..... .+.++ .+...+||+||++||+++...... .+..+.+.++.+.. .+|++
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 36899999999985532 11222 234678999999999998766532 34444555555443 59999
Q ss_pred EccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhcccc--C
Q 017588 145 VTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVD--R 222 (369)
Q Consensus 145 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~--~ 222 (369)
+++||||.. ......|++||++.|++.. +
T Consensus 81 ~~~GNHD~~-------------------------------------------------g~l~~~ql~wL~~~l~~~~~~~ 111 (199)
T cd07383 81 ATFGNHDGY-------------------------------------------------DWIRPSQIEWFKETSAALKKKY 111 (199)
T ss_pred EECccCCCC-------------------------------------------------CCCCHHHHHHHHHHHHHHhhcc
Confidence 999999920 1124789999999999863 1
Q ss_pred CCCCeEEEEeccCccccCCCCC---------CC-cchHHHHH-HHHHHHHhcCceEEEecccccceeee
Q 017588 223 GKTPWIVVLIHAPWYNTNTAHQ---------GE-VESEGMRK-AMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 223 ~~~~~~iv~~H~P~~~~~~~~~---------~~-~~~~~~~~-~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
....+.++++|+|+......+. .+ ........ .+..+.+..+|+++|+||+|.+....
T Consensus 112 ~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 112 GKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred CCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 1234699999999865422111 01 00111223 34444566699999999999977654
No 20
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.77 E-value=3.9e-17 Score=152.72 Aligned_cols=116 Identities=19% Similarity=0.296 Sum_probs=81.4
Q ss_pred CceeEEEE-eCcEEEEEecCCCC-----CCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCC---cchHH
Q 017588 181 SNLYYSFD-AAGVHVVMLGSYTD-----FDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGE---VESEG 251 (369)
Q Consensus 181 ~~~~ys~~-~g~~~~i~lds~~~-----~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~---~~~~~ 251 (369)
+..||+|+ .++++||+|||... ....++|++||+++|++.. .+++||++|||++.......+. .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~---~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASS---DTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCC---CCCEEEEECCCCcccccccccccccccccc
Confidence 46799999 89999999999643 1236899999999999853 3469999999998754322111 01113
Q ss_pred HHHHHHHHHHhc-CceEEEecccccceeeeec-cCCccCCCCceEEEECC
Q 017588 252 MRKAMEGLIHQA-RVGVVFAGHVHAYERFTRV-SNGKPDNCGPVHITIGD 299 (369)
Q Consensus 252 ~~~~l~~l~~~~-~v~lvl~GH~H~~~r~~~~-~~~~~~~~g~~~i~~G~ 299 (369)
..++|.++++++ +|.++||||.|......-. .++.....|...|.++|
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaS 416 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTAS 416 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccc
Confidence 457899999998 8999999999987654311 11111224677787764
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.75 E-value=3e-17 Score=140.14 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=110.2
Q ss_pred EEEEeeCCCCCCcHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccc
Q 017588 84 FAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKF 163 (369)
Q Consensus 84 f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~ 163 (369)
|+++||+|........ ..+.+.++|+||++||+++.+... ....+ +.++.+ ..|+++++||||.... .
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~~-~~~~~-~~l~~~--~~p~~~v~GNHD~~~~-------~ 68 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGKE-AAVEI-NLLLAI--GVPVLAVPGNCDTPEI-------L 68 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCHH-HHHHH-HHHHhc--CCCEEEEcCCCCCHHH-------H
Confidence 5789999975432222 345567899999999999865532 22222 334333 5899999999998311 1
Q ss_pred cccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCC------CCCChhHHHHHHHHhccccCCCCCeEEEEeccCcc
Q 017588 164 TSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTD------FDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWY 237 (369)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~------~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~ 237 (369)
........ . .....+.+++++|+++++... .....+|++|+ +.+.... .+.+|+++|+|++
T Consensus 69 ~~~~~~~~-~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~~---~~~~ilv~H~pp~ 135 (188)
T cd07392 69 GLLTSAGL-N--------LHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNLL---AKNLILVTHAPPY 135 (188)
T ss_pred HhhhcCcE-e--------cCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhccC---CCCeEEEECCCCc
Confidence 11000000 0 111345678899999987421 12346788898 4444332 2348999999997
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEEC
Q 017588 238 NTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIG 298 (369)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G 298 (369)
.......... .....+.+.+++++++++++||||+|....... -+++.+++.|
T Consensus 136 ~~~~d~~~~~-~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~~-------~~~~~~~n~G 188 (188)
T cd07392 136 GTAVDRVSGG-FHVGSKAIRKFIEERQPLLCICGHIHESRGVDK-------IGNTLVVNPG 188 (188)
T ss_pred CCcccccCCC-CccCCHHHHHHHHHhCCcEEEEeccccccceee-------eCCeEEecCC
Confidence 6311111110 002347888899999999999999998643221 2456666554
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.75 E-value=2.6e-17 Score=145.91 Aligned_cols=193 Identities=17% Similarity=0.120 Sum_probs=115.4
Q ss_pred EEEEEeeCCCCCCc-------HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCC
Q 017588 83 KFAIVGDLGQTGWT-------NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 83 ~f~~~gD~~~~~~~-------~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 155 (369)
||++++|.|..... +++++.+.+.++|+||++||++.... ....+.+.+.++ ...|++.++||||+...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~---~~~~~~~~l~~~-~~~pv~~v~GNHD~~~~ 76 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQ---RSLPFIEKLQEL-KGIKVTFNAGNHDMLKD 76 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchh---hHHHHHHHHHHh-cCCcEEEECCCCCCCCC
Confidence 58999999964221 23556666788999999999997431 222233333332 35899999999998411
Q ss_pred CccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC--------------------------C-----
Q 017588 156 PIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF--------------------------D----- 204 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~--------------------------~----- 204 (369)
.. +..+.+.+. +. ...+.++.+..++++|++++...++ .
T Consensus 77 ~~-----~~~~~~~~~-~~----~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 146 (239)
T TIGR03729 77 LT-----YEEIESNDS-PL----YLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPE 146 (239)
T ss_pred CC-----HHHHHhccc-hh----hhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHH
Confidence 11 111111110 00 0012333344467888888843221 0
Q ss_pred CChhHHHHHHHHhccccCCCCCeEEEEeccCccccCC----CCCCCc--chHHHHHHHHHHHHhcCceEEEeccccccee
Q 017588 205 QNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNT----AHQGEV--ESEGMRKAMEGLIHQARVGVVFAGHVHAYER 278 (369)
Q Consensus 205 ~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~----~~~~~~--~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r 278 (369)
...+|++||++.|++... .+ +|+++|+||..... ...... ........+.+++++++|+++||||+|....
T Consensus 147 ~~~~~l~~l~~~l~~~~~--~~-~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~ 223 (239)
T TIGR03729 147 RTAIVLKQLKKQLNQLDN--KQ-VIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFG 223 (239)
T ss_pred HHHHHHHHHHHHHHhcCC--CC-EEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCC
Confidence 125678999999988743 23 89999999855221 100000 0012347889999999999999999998753
Q ss_pred eeeccCCccCCCCceEEEECC
Q 017588 279 FTRVSNGKPDNCGPVHITIGD 299 (369)
Q Consensus 279 ~~~~~~~~~~~~g~~~i~~G~ 299 (369)
... -+|+.++++.-
T Consensus 224 ~~~-------i~~~~~~~~~~ 237 (239)
T TIGR03729 224 PLT-------IGGTTYHNRPL 237 (239)
T ss_pred CEE-------ECCEEEEecCC
Confidence 221 24777666543
No 23
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.69 E-value=6e-16 Score=135.91 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=103.1
Q ss_pred CeEEEEEeeCCCCCCc-----HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCC
Q 017588 81 PIKFAIVGDLGQTGWT-----NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 81 ~~~f~~~gD~~~~~~~-----~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 155 (369)
++||++++|+|..... +++++.+.+.+||+|+++||+++...... +.+.+.++.+....|+++++||||+...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKLKAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhccCCCCCEEEECCCcccccC
Confidence 4799999999986542 45666667789999999999998765432 3445556666556899999999999533
Q ss_pred CccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccC
Q 017588 156 PIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAP 235 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P 235 (369)
... .+....+...... -.+....++.++..+.++.... .....+++.+.+.+.+. .++.|+++|.|
T Consensus 79 ~~~---~~~~~l~~~~v~~-----L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~~~~~~~~~--~~~~I~l~H~P 144 (223)
T cd07385 79 DEE---NWIEALESAGITV-----LRNESVEISVGGATIGIAGVDD----GLGRRPDLEKALKGLDE--DDPNILLAHQP 144 (223)
T ss_pred chH---HHHHHHHHcCCEE-----eecCcEEeccCCeEEEEEeccC----ccccCCCHHHHHhCCCC--CCCEEEEecCC
Confidence 210 0011111101110 1134455666664444432111 11223456666665433 45699999997
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeecc
Q 017588 236 WYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVS 283 (369)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~ 283 (369)
.... . +.+.++|++++||+|..|...|..
T Consensus 145 ~~~~---------------~----~~~~~~dl~l~GHtHggqi~~~~~ 173 (223)
T cd07385 145 DTAE---------------E----AAAWGVDLQLSGHTHGGQIRLPGI 173 (223)
T ss_pred ChhH---------------H----hcccCccEEEeccCCCCEEecccc
Confidence 4311 1 156689999999999999776543
No 24
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.68 E-value=1.4e-15 Score=131.70 Aligned_cols=174 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred CCeEEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCcc
Q 017588 80 LPIKFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPII 158 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~ 158 (369)
.+.|++++||+|.+.. .+++++.+++.++|+||++||+++.+...+....+.+.+..+ ..|++.++||||.. ..
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~~V~GNhD~~-v~-- 77 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA--HLPTFYVPGPQDAP-LW-- 77 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCceEEEcCCCChH-HH--
Confidence 4678999999996432 234455555678999999999998763333444444444443 48999999999972 00
Q ss_pred cccccc-ccccccccCcCCCCCCCceeEEEEe-CcEEEEEecCCCCC--CCChhHH----HHHHH----HhccccCCCCC
Q 017588 159 HSTKFT-SYNARWRMPFEESGSNSNLYYSFDA-AGVHVVMLGSYTDF--DQNSDQY----KWLEA----DLNKVDRGKTP 226 (369)
Q Consensus 159 ~~~~~~-~~~~~~~~p~~~~~~~~~~~ys~~~-g~~~~i~lds~~~~--~~~~~q~----~Wl~~----~L~~~~~~~~~ 226 (369)
..+. .|.+....|.. .... .. ...+ |+++|+.++....+ ...++|. .|+.+ .+.+.. .+
T Consensus 78 --~~l~~~~~~~~~~p~~-~~lh-~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~~---~~ 148 (224)
T cd07388 78 --EYLREAYNAELVHPEI-RNVH-ET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELK---DY 148 (224)
T ss_pred --HHHHHHhcccccCccc-eecC-CC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhCC---CC
Confidence 0111 11100001110 0001 11 2344 55999999865432 2234442 56433 333321 23
Q ss_pred eEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccc
Q 017588 227 WIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVH 274 (369)
Q Consensus 227 ~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H 274 (369)
..|+++|+||+.....+ .....+.++++++++.+++|||+|
T Consensus 149 ~~VLv~H~PP~g~g~~h-------~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 149 RKVFLFHTPPYHKGLNE-------QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred CeEEEECCCCCCCCCCc-------cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 48999999999874322 235788899999999999999999
No 25
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=138.88 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=116.9
Q ss_pred eEEEEEeeCCCCC--C-c----HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCC
Q 017588 82 IKFAIVGDLGQTG--W-T----NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEK 154 (369)
Q Consensus 82 ~~f~~~gD~~~~~--~-~----~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~ 154 (369)
++|+.++|.|... . . .++++.++..+||+||++||+++.+. ....+...+.++.+....|++++|||||...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGE-PEEYRRLKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCC-HHHHHHHHHHHhhccCCCceEeeCCCCcCCc
Confidence 5899999999882 2 1 34556677789999999999998743 4556666666664444689999999999953
Q ss_pred CCccccccccccccccccCcCCCCCCCceeEEEEe-CcEEEEEecCCCC----CCCChhHHHHHHHHhccccCCCCCeEE
Q 017588 155 LPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDA-AGVHVVMLGSYTD----FDQNSDQYKWLEADLNKVDRGKTPWIV 229 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~-g~~~~i~lds~~~----~~~~~~q~~Wl~~~L~~~~~~~~~~~i 229 (369)
.. ...+...+.... ........ ++++++.+|+... ......|++||++.|++........+|
T Consensus 80 ~~------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v 146 (301)
T COG1409 80 VN------GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVV 146 (301)
T ss_pred hH------HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEE
Confidence 21 111111111110 11111122 6789999999654 224689999999999987652112356
Q ss_pred EEeccCccccCCCCCCCcchHHHHHHHHHHHHhcC--ceEEEecccccc
Q 017588 230 VLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQAR--VGVVFAGHVHAY 276 (369)
Q Consensus 230 v~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvl~GH~H~~ 276 (369)
++.|+|+............ .....+..++..++ ++++|+||.|..
T Consensus 147 ~~~hh~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 147 VLHHHPLPSPGTGVDRVAL--RDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred EecCCCCCCCCCccceeee--ecchhHHHHHHhcCCceEEEEeCccccc
Confidence 6666766543332222211 34466777888887 999999999976
No 26
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.68 E-value=8.8e-16 Score=125.29 Aligned_cols=132 Identities=22% Similarity=0.307 Sum_probs=95.6
Q ss_pred EEEEeeCCCCCCcH-----------HHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcC-CcEEEccCCCC
Q 017588 84 FAIVGDLGQTGWTN-----------STLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQ-RPWMVTQGNHE 151 (369)
Q Consensus 84 f~~~gD~~~~~~~~-----------~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~-~P~~~v~GNHD 151 (369)
|+.++|+|.+.... .+++.+...++|+|+++||+++.+. ...|+.+.+.++.+... .|++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGL-PEEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCC-HHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 57899999865421 1344556789999999999998655 45677777777777544 69999999999
Q ss_pred CCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEE
Q 017588 152 IEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVL 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~ 231 (369)
. |++
T Consensus 80 ~----------------------------------------------------------------------------iv~ 83 (144)
T cd07400 80 V----------------------------------------------------------------------------IVV 83 (144)
T ss_pred E----------------------------------------------------------------------------EEE
Confidence 7 899
Q ss_pred eccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECC
Q 017588 232 IHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGD 299 (369)
Q Consensus 232 ~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~ 299 (369)
+|+|++.......... ..++.+.++++++++++++|||+|......- . ...+++.++++|+
T Consensus 84 ~Hhp~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~-~---~~~~~~~~~~aGs 144 (144)
T cd07400 84 LHHPLVPPPGSGRERL---LDAGDALKLLAEAGVDLVLHGHKHVPYVGNI-S---NAGGGLVVIGAGT 144 (144)
T ss_pred ecCCCCCCCccccccC---CCHHHHHHHHHHcCCCEEEECCCCCcCeeec-c---CCCCCEEEEecCC
Confidence 9999876543221111 1457799999999999999999998664431 1 1234677777664
No 27
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.67 E-value=2e-15 Score=136.07 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=99.8
Q ss_pred CCCeEEEEEeeCCCCCC-----cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 79 QLPIKFAIVGDLGQTGW-----TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~-----~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
.+++||++++|+|.+.. ..++++.+++.+||+|+++||+++.+.. ..++.+.+.++.+....|+++|+||||+.
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~-~~~~~~~~~L~~L~~~~pv~~V~GNHD~~ 125 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMP-LNFSAFSDVLSPLAECAPTFACFGNHDRP 125 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCcc-ccHHHHHHHHHHHhhcCCEEEecCCCCcc
Confidence 56799999999998633 2345566678899999999999973322 23445666777776668999999999984
Q ss_pred CCCccccccccccccccccCcCCCCCCCceeEEEEeCc--EEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEE
Q 017588 154 KLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAG--VHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVL 231 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~--~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~ 231 (369)
.... ....+.+.+. ..+...-.+....+..++ +.++++|.... +... ..+.+++ ..+.|++
T Consensus 126 ~~~~----~~~~~~~~l~--~~gi~lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~---~~~~~~~-----~~~~IlL 188 (271)
T PRK11340 126 VGTE----KNHLIGETLK--SAGITVLFNQATVIATPNRQFELVGTGDLWA---GQCK---PPPASEA-----NLPRLVL 188 (271)
T ss_pred cCcc----chHHHHHHHH--hcCcEEeeCCeEEEeeCCcEEEEEEecchhc---cCCC---hhHhcCC-----CCCeEEE
Confidence 2211 1111111110 000000113444455443 66777764211 1111 1112221 2348999
Q ss_pred eccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeec
Q 017588 232 IHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRV 282 (369)
Q Consensus 232 ~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~ 282 (369)
.|.|-.- +.+.+.++|++||||+|..|...|.
T Consensus 189 ~H~P~~~-------------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 189 AHNPDSK-------------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred EcCCChh-------------------HhhccCCCCEEEeccccCCeEEccc
Confidence 9999431 1234568999999999999987664
No 28
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.66 E-value=5.3e-16 Score=129.74 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=94.5
Q ss_pred EEEEeeCCCCCCcHH-HH-HHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccc
Q 017588 84 FAIVGDLGQTGWTNS-TL-QHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHST 161 (369)
Q Consensus 84 f~~~gD~~~~~~~~~-~~-~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 161 (369)
|+++||+|.+..... .+ +.+...++|+++++||+++..... .+.. .........|+++++||||+.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~-~~~~---~~~~~~~~~~v~~v~GNHD~~-------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAP-RFAP---LLLALKGFEPVIYVPGNHEFY-------- 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchH-HHHH---HHHhhcCCccEEEeCCCcceE--------
Confidence 578999997654322 22 334567899999999999765432 2221 222333458999999999992
Q ss_pred cccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCC-ChhHHHHHHHHhccccCCCCCeEEEEeccCccccC
Q 017588 162 KFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQ-NSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTN 240 (369)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~-~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~ 240 (369)
++|+......++.. ..++.+|+.+++. +.+||++|+|++...
T Consensus 69 ------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~-------~~~vv~~HhpP~~~~ 111 (166)
T cd07404 69 ------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR-------GKTVVVTHHAPSPLS 111 (166)
T ss_pred ------------------------------EEEEeeecccccCccchHHHHhCCCCCC-------CCEEEEeCCCCCccc
Confidence 12222221122221 1234444444433 238999999998764
Q ss_pred CCCCCCcc--hHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEE
Q 017588 241 TAHQGEVE--SEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITI 297 (369)
Q Consensus 241 ~~~~~~~~--~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~ 297 (369)
........ ....++.+.+++++.+|++++|||+|...... -+|+.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~~--------~~g~~~~~n 162 (166)
T cd07404 112 LAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDYR--------IGGTRVLSN 162 (166)
T ss_pred cCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceEE--------ECCEEEEec
Confidence 33211111 12345667788888999999999999875443 246666543
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.62 E-value=6.7e-15 Score=129.13 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=106.1
Q ss_pred EEEEEeeCCCCCCc----------------HHHHHHHHhcCCCeEEeccccCCCCCC-hHHHHHHHHhhHhhh-cCCcEE
Q 017588 83 KFAIVGDLGQTGWT----------------NSTLQHVAKSNYDMLLLPGDLSYADLD-QPLWDSFGRMVEPLA-SQRPWM 144 (369)
Q Consensus 83 ~f~~~gD~~~~~~~----------------~~~~~~i~~~~~d~vl~~GD~~~~~~~-~~~~~~~~~~~~~l~-~~~P~~ 144 (369)
||++++|+|.+... +++++.+.+.+||+||++||+++.... ...+..+.+.++++. ..+|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 68999999976431 234445557899999999999986543 334556666677665 368999
Q ss_pred EccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCC
Q 017588 145 VTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGK 224 (369)
Q Consensus 145 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~ 224 (369)
+++||||......... ....+........ ...........+...++.|++++..... ....+.++++..+.+...
T Consensus 81 ~~~GNHD~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~-- 155 (223)
T cd00840 81 IIAGNHDSPSRLGALS-PLLALSGLHLVGV-EEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRPLDP-- 155 (223)
T ss_pred EecCCCCCcccccccc-chHhhCcEEEEcc-cCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhccCC--
Confidence 9999999953221000 0000000000000 0000011222334455888888753221 112334444445444433
Q ss_pred CCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceee
Q 017588 225 TPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERF 279 (369)
Q Consensus 225 ~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~ 279 (369)
....|+++|.|+.......... .......+...++|++++||.|..+..
T Consensus 156 ~~~~Il~~H~~~~~~~~~~~~~------~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 156 DDFNILLLHGGVAGAGPSDSER------APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred CCcEEEEEeeeeecCCCCcccc------cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3458999999976443221110 123334456778999999999998754
No 30
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.61 E-value=2.2e-13 Score=120.42 Aligned_cols=264 Identities=19% Similarity=0.250 Sum_probs=139.0
Q ss_pred eEEECCCCCCCeEEEEEeeCCCCCC--------------------cHHHHHHH-HhcCCCeEEeccccCCCCCChHHHHH
Q 017588 71 RSFKTPPAQLPIKFAIVGDLGQTGW--------------------TNSTLQHV-AKSNYDMLLLPGDLSYADLDQPLWDS 129 (369)
Q Consensus 71 ~~F~t~~~~~~~~f~~~gD~~~~~~--------------------~~~~~~~i-~~~~~d~vl~~GD~~~~~~~~~~~~~ 129 (369)
++|+. .++|||+.++|+|.+.. +...++++ +..+||||+++||+++.......-..
T Consensus 46 lr~~~---~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~s 122 (379)
T KOG1432|consen 46 LRFRE---DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATS 122 (379)
T ss_pred eeecC---CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHH
Confidence 44444 68999999999987643 01234443 57899999999999998554433334
Q ss_pred HHHhhHhhh-cCCcEEEccCCCCCCCCCccccccccccccccccCcCCC--CCCCc--------eeEEEE-eC-------
Q 017588 130 FGRMVEPLA-SQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEES--GSNSN--------LYYSFD-AA------- 190 (369)
Q Consensus 130 ~~~~~~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~--------~~ys~~-~g------- 190 (369)
+.+.+.+.. .++||.+++||||-...-. +..+..+.. .+|..-. .+... ..|... ++
T Consensus 123 l~kAvaP~I~~~IPwA~~lGNHDdes~lt--r~ql~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~ 198 (379)
T KOG1432|consen 123 LMKAVAPAIDRKIPWAAVLGNHDDESDLT--RLQLMKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELE 198 (379)
T ss_pred HHHHhhhHhhcCCCeEEEecccccccccC--HHHHHHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCcccc
Confidence 555666543 4699999999999953321 111111211 1222100 00001 111111 11
Q ss_pred ---cEEEEEecCCCC---------CC-CChhHHHHHHHHhccc---cCCCCC-eEEEEeccCc--cccCCCC------CC
Q 017588 191 ---GVHVVMLGSYTD---------FD-QNSDQYKWLEADLNKV---DRGKTP-WIVVLIHAPW--YNTNTAH------QG 245 (369)
Q Consensus 191 ---~~~~i~lds~~~---------~~-~~~~q~~Wl~~~L~~~---~~~~~~-~~iv~~H~P~--~~~~~~~------~~ 245 (369)
-..+++||+..+ |+ ....|..||+..-.+- ...-.| --+++.|.|+ |..-... ..
T Consensus 199 ~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~ 278 (379)
T KOG1432|consen 199 NKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQ 278 (379)
T ss_pred cCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceee
Confidence 134566665322 11 2478999998876221 111112 3688999996 2211110 00
Q ss_pred Ccc-hHHHHHHHHHHHH-hcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCCCCccccCCCCCCCceeeEec
Q 017588 246 EVE-SEGMRKAMEGLIH-QARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNREGLASRFMNPQPAISVFREA 323 (369)
Q Consensus 246 ~~~-~~~~~~~l~~l~~-~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~ 323 (369)
++. .......+...|. +.+|++|+|||.|......+. ++.++++-|+|+... . +. .+.|
T Consensus 279 E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaGyg-g---Yg--~~gw------ 339 (379)
T KOG1432|consen 279 EGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAGYG-G---YG--IGGW------ 339 (379)
T ss_pred ccccccccccHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCccC-C---cC--cCCc------
Confidence 000 0112233444444 789999999999998877653 354666655432221 1 11 1222
Q ss_pred ccceEEEEEEeCceEEEEEEEeCCCCCeeeEEEEEEe
Q 017588 324 SFGHGQLEVVNATHAQWTWHRNDDDKPIASDSIWLRS 360 (369)
Q Consensus 324 ~~g~~~l~v~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 360 (369)
..+-.++++......-=.|++.+++.-.++|.--+-+
T Consensus 340 ~Rr~Rv~e~d~~~~~IkTWKRl~d~~~~~~D~q~l~d 376 (379)
T KOG1432|consen 340 ERRARVFELDLNKDRIKTWKRLDDKPLSVIDYQLLYD 376 (379)
T ss_pred ccceEEEEccccccccceeeecCCCCcceeeeEEEec
Confidence 1122344543211112247887777766777665544
No 31
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.58 E-value=5.9e-14 Score=130.16 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=66.6
Q ss_pred ceeEEEE-eCcE--EEEEecCCCC-----------CCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCc
Q 017588 182 NLYYSFD-AAGV--HVVMLGSYTD-----------FDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEV 247 (369)
Q Consensus 182 ~~~ys~~-~g~~--~~i~lds~~~-----------~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~ 247 (369)
..||+|+ .+++ ++|+||+... .....+|++||+++|+.+.. +.+++|+++|+|+.+.........
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhhh
Confidence 4599999 5845 9999998641 11358999999999999864 456688888888765222111000
Q ss_pred c---------h--HHHHHHHHHHHHhc-CceEEEeccccccee
Q 017588 248 E---------S--EGMRKAMEGLIHQA-RVGVVFAGHVHAYER 278 (369)
Q Consensus 248 ~---------~--~~~~~~l~~l~~~~-~v~lvl~GH~H~~~r 278 (369)
. . .....+|..++++| +|.++||||.|....
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v 413 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTV 413 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccccc
Confidence 0 0 11224899999999 798999999996543
No 32
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.51 E-value=5.3e-14 Score=96.35 Aligned_cols=62 Identities=44% Similarity=0.808 Sum_probs=41.4
Q ss_pred CCceEEEECCCCCCCCccccCCCCCCCceeeEecccceEEEEEEeCceEEEEEEEeCCCCCeeeEEE
Q 017588 290 CGPVHITIGDGGNREGLASRFMNPQPAISVFREASFGHGQLEVVNATHAQWTWHRNDDDKPIASDSI 356 (369)
Q Consensus 290 ~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~~~~~d~~ 356 (369)
++|+||++|+||+. + ..+..++|+|++++..++||++|++.|.++|.|+|+++.+|+ |+|+|
T Consensus 1 kapVhiv~G~aG~~--l-~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~--v~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNG--L-DPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGS--VLDEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T---CEE-
T ss_pred CCCEEEEECcCCCC--c-ccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCc--EecCC
Confidence 47999999999993 3 346678899999999999999999999999999999998898 99998
No 33
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.46 E-value=1e-12 Score=105.87 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=84.7
Q ss_pred EEEEEeeCCCCCCcHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCcccccc
Q 017588 83 KFAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTK 162 (369)
Q Consensus 83 ~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~ 162 (369)
||+++||+|.... .+...++|+++++||+++.+.. ..++.+.+.++.+. ..+++.++||||...
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~~-~~~~~~~~~l~~~~-~~~~~~v~GNHD~~~-------- 64 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGTL-EELQKFLDWLKSLP-HPHKIVIAGNHDLTL-------- 64 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCCH-HHHHHHHHHHHhCC-CCeEEEEECCCCCcC--------
Confidence 5899999996644 2345689999999999976543 33444555555542 123578999999820
Q ss_pred ccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCC
Q 017588 163 FTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTA 242 (369)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 242 (369)
. . + ...|+++|.|++.....
T Consensus 65 -------------------~---------------------------------------~-~-~~~ilv~H~~p~~~~~~ 84 (135)
T cd07379 65 -------------------D---------------------------------------P-E-DTDILVTHGPPYGHLDL 84 (135)
T ss_pred -------------------C---------------------------------------C-C-CCEEEEECCCCCcCccc
Confidence 0 1 1 23789999998765432
Q ss_pred CCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEE
Q 017588 243 HQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITI 297 (369)
Q Consensus 243 ~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~ 297 (369)
...... ...+.+.+++++.+++++|+||+|......... ...+++++|++
T Consensus 85 ~~~~~~--~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~---~~~~~t~~in~ 134 (135)
T cd07379 85 VSSGQR--VGCEELLNRVQRVRPKLHVFGHIHEGYGAERVL---DTDGETLFVNA 134 (135)
T ss_pred cccCcc--cCCHHHHHHHHHHCCcEEEEcCcCCcCceeEec---ccCCCEEEEeC
Confidence 211001 223567778888999999999999864221000 01357777764
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.45 E-value=4.2e-13 Score=110.82 Aligned_cols=139 Identities=21% Similarity=0.309 Sum_probs=83.6
Q ss_pred eEEEEEeeCCCCCCc-HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCcccc
Q 017588 82 IKFAIVGDLGQTGWT-NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHS 160 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~ 160 (369)
+||+++||+|..... +++++.+ .++|+|+++||+++. ..+.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~-------~~~~~~~~~~----~~~~v~GNHD~~~------ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP-------EEVLELLRDI----PVYVVRGNHDNWA------ 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH-------HHHHHHHHHH----EEEEE--CCHSTH------
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH-------HHHHHHHhcC----CEEEEeCCccccc------
Confidence 689999999976432 4556665 579999999999862 2334444443 9999999999731
Q ss_pred ccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccC
Q 017588 161 TKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTN 240 (369)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~ 240 (369)
+. ..... .. +.+.+... -....|+++|.+++...
T Consensus 62 --~~---~~~~~---------~~-----------------------------~~~~~~~~---~~~~~i~~~H~~~~~~~ 95 (156)
T PF12850_consen 62 --FP---NENDE---------EY-----------------------------LLDALRLT---IDGFKILLSHGHPYDVQ 95 (156)
T ss_dssp --HH---SEECT---------CS-----------------------------SHSEEEEE---ETTEEEEEESSTSSSST
T ss_pred --ch---hhhhc---------cc-----------------------------cccceeee---ecCCeEEEECCCCcccc
Confidence 10 00000 00 11111100 12347999998766532
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCC
Q 017588 241 TAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNR 303 (369)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~ 303 (369)
...+.+..++...+++++++||.|..+... .+++.+++.|+-+..
T Consensus 96 ----------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~~~~ 140 (156)
T PF12850_consen 96 ----------WDPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSIGGP 140 (156)
T ss_dssp ----------TTHHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GSSS-
T ss_pred ----------cChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcCCCC
Confidence 122356677888999999999999987765 357888998876553
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.44 E-value=2.8e-12 Score=111.31 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=103.0
Q ss_pred eEEEEEeeCCCCCCcHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccc
Q 017588 82 IKFAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHST 161 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 161 (369)
+||+++||.|.... ....+.++..+||+|+++||+++.. . .+.+.+..+ ..|+++++||||....... ..
T Consensus 1 ~rIa~isDiHg~~~-~~~~~~l~~~~pD~Vl~~GDi~~~~--~----~~~~~l~~l--~~p~~~V~GNHD~~~~~~~-~~ 70 (238)
T cd07397 1 LRIAIVGDVHGQWD-LEDIKALHLLQPDLVLFVGDFGNES--V----QLVRAISSL--PLPKAVILGNHDAWYDATF-RK 70 (238)
T ss_pred CEEEEEecCCCCch-HHHHHHHhccCCCEEEECCCCCcCh--H----HHHHHHHhC--CCCeEEEcCCCcccccccc-cc
Confidence 58999999996533 2334566677999999999998532 1 122333333 4799999999998543210 00
Q ss_pred cccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCC----------------CC--CChhHHHHHHHHhccccCC
Q 017588 162 KFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTD----------------FD--QNSDQYKWLEADLNKVDRG 223 (369)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~----------------~~--~~~~q~~Wl~~~L~~~~~~ 223 (369)
....+.+....-. ..--.|-..++....+.++.++.- |. ...+-.+.+-+.++....
T Consensus 71 k~~~l~~~L~~lg----~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~- 145 (238)
T cd07397 71 KGDRVQEQLELLG----DLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPP- 145 (238)
T ss_pred hHHHHHHHHHHhC----CcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCC-
Confidence 1111221111110 000111122333333334433210 10 112333444444433333
Q ss_pred CCCeEEEEeccCccccCCCC-----------CCCcchHHHHHHHHHHHHhcCceEEEecccccceeeee-ccC-CccCCC
Q 017588 224 KTPWIVVLIHAPWYNTNTAH-----------QGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTR-VSN-GKPDNC 290 (369)
Q Consensus 224 ~~~~~iv~~H~P~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~-~~~-~~~~~~ 290 (369)
..+ .|+++|.++...+... ......+.+++++..+-.+-.++++++||.|.--+... ++. -..+..
T Consensus 146 ~~~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~~~~~~~ 224 (238)
T cd07397 146 DLP-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNMIAVDRE 224 (238)
T ss_pred CCC-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCcccccccccceeeecCC
Confidence 233 7999999986543110 01112245666665554334589999999997633221 100 012357
Q ss_pred CceEEEEC
Q 017588 291 GPVHITIG 298 (369)
Q Consensus 291 g~~~i~~G 298 (369)
|++|++++
T Consensus 225 gt~y~N~a 232 (238)
T cd07397 225 GTVYLNAA 232 (238)
T ss_pred CeEEEecc
Confidence 89999754
No 36
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.44 E-value=1.8e-12 Score=103.09 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=83.4
Q ss_pred EEEeeCCCCCCcHHHH---HHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccc
Q 017588 85 AIVGDLGQTGWTNSTL---QHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHST 161 (369)
Q Consensus 85 ~~~gD~~~~~~~~~~~---~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 161 (369)
+++||+|......... ....+.++++||++||+++.......+ .+...........|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEV-LAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHH-HHHHHHHhhcCCCCEEEeCCCce----------
Confidence 4689999876543332 345578999999999999977654332 22212233334699999999999
Q ss_pred cccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCC
Q 017588 162 KFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNT 241 (369)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 241 (369)
|+++|.|++....
T Consensus 70 -------------------------------------------------------------------i~~~H~~~~~~~~ 82 (131)
T cd00838 70 -------------------------------------------------------------------ILLTHGPPYDPLD 82 (131)
T ss_pred -------------------------------------------------------------------EEEeccCCCCCch
Confidence 9999999876554
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 242 AHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 242 ~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
....... ..+..+..++.+.+++++|+||.|.+.+..
T Consensus 83 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 83 ELSPDED--PGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred hhcccch--hhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 2221111 246788889999999999999999998875
No 37
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.40 E-value=5e-12 Score=113.57 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=58.5
Q ss_pred CCCeEEEEEeeCCCCCCc---HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCC
Q 017588 79 QLPIKFAIVGDLGQTGWT---NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEK 154 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~---~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~ 154 (369)
..+++++.++|.|..... .+.+..+.+..||+|+++||+++... ......+.+.++++.+..+++++.||||+..
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~-~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~ 119 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR-PPGVAALALFLAKLKAPLGVFAVLGNHDYGV 119 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC-CCCHHHHHHHHHhhhccCCEEEEeccccccc
Confidence 468899999999987665 34455566788899999999998512 2344556677888888899999999999964
No 38
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.34 E-value=7.9e-11 Score=112.06 Aligned_cols=174 Identities=19% Similarity=0.298 Sum_probs=106.3
Q ss_pred HHHHHHHh--cCCCeEEeccccCCCCCCh----HHH---HHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccc---
Q 017588 98 STLQHVAK--SNYDMLLLPGDLSYADLDQ----PLW---DSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTS--- 165 (369)
Q Consensus 98 ~~~~~i~~--~~~d~vl~~GD~~~~~~~~----~~~---~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~--- 165 (369)
.+++.|++ .++|||+++||++-...+. +.. ..+.+.+.+....+|+|+++||||...-..+.......
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~ 278 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHS 278 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhh
Confidence 45666653 3489999999999766431 111 22344556666789999999999995432221111111
Q ss_pred -------ccccc--ccCcCC-CCCCCceeEEE-EeCcEEEEEecCCCCC----------CCChhHHHHHHHHhccccCCC
Q 017588 166 -------YNARW--RMPFEE-SGSNSNLYYSF-DAAGVHVVMLGSYTDF----------DQNSDQYKWLEADLNKVDRGK 224 (369)
Q Consensus 166 -------~~~~~--~~p~~~-~~~~~~~~ys~-~~g~~~~i~lds~~~~----------~~~~~q~~Wl~~~L~~~~~~~ 224 (369)
+...| .+|... .....+.+|.. .+++.++|+||+..-+ .....|++|+..+|.+++.++
T Consensus 279 ~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~G 358 (577)
T KOG3770|consen 279 QLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAG 358 (577)
T ss_pred hhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhcC
Confidence 11111 123221 11233556654 4688999999985321 225778999999999987644
Q ss_pred CCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc--CceEEEecccccceee
Q 017588 225 TPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA--RVGVVFAGHVHAYERF 279 (369)
Q Consensus 225 ~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~lvl~GH~H~~~r~ 279 (369)
. -|-+++|.|+-.. .... .....+-.++.++ -+...|.||.|.-+..
T Consensus 359 e-kVhil~HIPpG~~-~c~~------~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 359 E-KVHILGHIPPGDG-VCLE------GWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred C-EEEEEEeeCCCCc-chhh------hhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 4 3889999996431 1111 2344566666666 3557899999986644
No 39
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.33 E-value=3.4e-10 Score=95.30 Aligned_cols=166 Identities=14% Similarity=0.194 Sum_probs=98.9
Q ss_pred EEEEEeeCCCCCCcH----HHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCcc
Q 017588 83 KFAIVGDLGQTGWTN----STLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPII 158 (369)
Q Consensus 83 ~f~~~gD~~~~~~~~----~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~ 158 (369)
+++++||+|.+.... .+.+.++..++|.|+++||+++ .+.+ +.++.+ ..|++.|.||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~----~~~~----~~l~~~--~~~~~~V~GN~D~~~---- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS----KETY----DYLKTI--APDVHIVRGDFDENL---- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC----HHHH----HHHHhh--CCceEEEECCCCccc----
Confidence 478999999554322 3344444468999999999975 2222 333333 247999999999820
Q ss_pred ccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccc
Q 017588 159 HSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYN 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~ 238 (369)
.+|. ...+++++ ++|.++|.-.+.
T Consensus 67 ------------~lp~---------~~~~~~~g-----------------------------------~~i~l~HG~~~~ 90 (178)
T cd07394 67 ------------NYPE---------TKVITVGQ-----------------------------------FKIGLIHGHQVV 90 (178)
T ss_pred ------------cCCC---------cEEEEECC-----------------------------------EEEEEEECCcCC
Confidence 1232 11122222 356666642221
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCCCCccccCCCCCCCce
Q 017588 239 TNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNREGLASRFMNPQPAIS 318 (369)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~ 318 (369)
... ..+.+..+.++.++|++++||+|...... .+|+.+++.|+.|.+.... + ..
T Consensus 91 ~~~----------~~~~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~~~~~~-~---~~---- 144 (178)
T cd07394 91 PWG----------DPDSLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATGAFSPL-D---PN---- 144 (178)
T ss_pred CCC----------CHHHHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCCCCCCC-C---CC----
Confidence 100 11344555667889999999999865543 3588899999876542110 0 01
Q ss_pred eeEecccceEEEEEEeCceEEEEEEEeCCCC
Q 017588 319 VFREASFGHGQLEVVNATHAQWTWHRNDDDK 349 (369)
Q Consensus 319 ~~~~~~~g~~~l~v~~~~~~~~~~~~~~~g~ 349 (369)
....|+.|++.+ ....++++...+++
T Consensus 145 ----~~~syail~~~~-~~~~~~~~~l~~~~ 170 (178)
T cd07394 145 ----VIPSFVLMDIQG-SKVVTYVYQLIDGE 170 (178)
T ss_pred ----CCCeEEEEEecC-CeEEEEEEEEECCc
Confidence 012588888744 45788888875555
No 40
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.33 E-value=1e-11 Score=104.39 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=71.1
Q ss_pred HHhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhh---cCCcEEEccCCCCCCCCCccccccccccccccccCcCCC
Q 017588 103 VAKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLA---SQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEES 177 (369)
Q Consensus 103 i~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~---~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~ 177 (369)
+...+||+|+++||+++.+.. ...|....+.+.++. ..+|++.++||||.+.... . ....-.++|.
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~--~-~~~~~v~RF~------ 108 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEE--D-PIESKIRRFE------ 108 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCC--C-cCHHHHHHHH------
Confidence 346799999999999998764 333544333333332 3489999999999953211 0 0011112221
Q ss_pred CCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHH
Q 017588 178 GSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAME 257 (369)
Q Consensus 178 ~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~ 257 (369)
.+| |+++|.|+..... ..+.
T Consensus 109 -----~~F-------------------------------------------i~lsH~P~~~~~~------------~~~~ 128 (195)
T cd08166 109 -----KYF-------------------------------------------IMLSHVPLLAEGG------------QALK 128 (195)
T ss_pred -----Hhh-------------------------------------------eeeeccccccccc------------HHHH
Confidence 011 9999999865321 2667
Q ss_pred HHHHhcCceEEEecccccceeee
Q 017588 258 GLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 258 ~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
.++.+++++++|+||.|.+....
T Consensus 129 ~~~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 129 HVVTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HHHHhcCceEEEEcCccceeeEE
Confidence 78889999999999999987654
No 41
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.30 E-value=3e-11 Score=99.77 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=92.4
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccc
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHST 161 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 161 (369)
|++++||+|.... ..++++.+. ++|.|+++||+++...... +....|++.|+||||...
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~--~~d~ii~~GD~~~~~~~~~-----------~~~~~~~~~V~GNhD~~~------- 60 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFG--DVDLIIHAGDVLYPGPLNE-----------LELKAPVIAVRGNCDGEV------- 60 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc--CCCEEEECCccccccccch-----------hhcCCcEEEEeCCCCCcC-------
Confidence 5899999996542 123333332 2999999999997654221 223579999999999831
Q ss_pred cccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCC
Q 017588 162 KFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNT 241 (369)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 241 (369)
+ .. .+|. ...+ .. ...+|+++|.+......
T Consensus 61 -~---~~--~~p~---------~~~~-------------------------------~~----~g~~i~v~Hg~~~~~~~ 90 (155)
T cd00841 61 -D---FP--ILPE---------EAVL-------------------------------EI----GGKRIFLTHGHLYGVKN 90 (155)
T ss_pred -C---cc--cCCc---------eEEE-------------------------------EE----CCEEEEEECCccccccc
Confidence 0 00 1111 0000 01 12368899987654321
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCCCCccccCCCCCCCceeeE
Q 017588 242 AHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNREGLASRFMNPQPAISVFR 321 (369)
Q Consensus 242 ~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~ 321 (369)
. . .. ..++++.++|++++||+|...... .+++.+++.|+.|.+. . .+
T Consensus 91 ~---------~-~~-~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~~~-----~-~~-------- 137 (155)
T cd00841 91 G---------L-DR-LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSLPR-----G-GG-------- 137 (155)
T ss_pred c---------h-hh-hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccCcC-----C-CC--------
Confidence 1 0 11 455667789999999999865443 3578889999876541 1 11
Q ss_pred ecccceEEEEEEeCceEEEEE
Q 017588 322 EASFGHGQLEVVNATHAQWTW 342 (369)
Q Consensus 322 ~~~~g~~~l~v~~~~~~~~~~ 342 (369)
..+|+++++.+ .+++++
T Consensus 138 --~~~~~i~~~~~--~~~~~~ 154 (155)
T cd00841 138 --PPTYAILEIDD--KGEVEI 154 (155)
T ss_pred --CCeEEEEEecC--CCcEEE
Confidence 24678888754 455554
No 42
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.29 E-value=3.7e-11 Score=106.60 Aligned_cols=194 Identities=18% Similarity=0.197 Sum_probs=101.9
Q ss_pred eEEEEEeeCCCCCCcH----HHHHHHH--hcCCCeEEeccccCCCC----CChHHHHHHHHhhHhhhcC-CcEEEccCCC
Q 017588 82 IKFAIVGDLGQTGWTN----STLQHVA--KSNYDMLLLPGDLSYAD----LDQPLWDSFGRMVEPLASQ-RPWMVTQGNH 150 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~~----~~~~~i~--~~~~d~vl~~GD~~~~~----~~~~~~~~~~~~~~~l~~~-~P~~~v~GNH 150 (369)
++++++||+|.+.... ..++.+. ..+||.|+++||+++.- ........+.+.++.+... +|++.++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4789999999875432 2334342 46899999999999631 1122234455666666554 8999999999
Q ss_pred CCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEE
Q 017588 151 EIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVV 230 (369)
Q Consensus 151 D~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv 230 (369)
|..... .+..-...-.+| ....+++++.++++.-.... ...+..++++.+.+... +...
T Consensus 81 D~~~~~-----~~~~~~g~~~l~---------~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~r~~~r~~------~~~~ 139 (241)
T PRK05340 81 DFLLGK-----RFAKAAGMTLLP---------DPSVIDLYGQRVLLLHGDTL-CTDDKAYQRFRRKVRNP------WLQW 139 (241)
T ss_pred chhhhH-----HHHHhCCCEEeC---------CcEEEEECCEEEEEECCccc-ccCCHHHHHHHHHHhCH------HHHH
Confidence 984211 110000000111 23346677877777743221 11234444444444331 1222
Q ss_pred EeccCccccCC-------------CC-CCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEE
Q 017588 231 LIHAPWYNTNT-------------AH-QGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHIT 296 (369)
Q Consensus 231 ~~H~P~~~~~~-------------~~-~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~ 296 (369)
+.|.+++.... .. ..........+.+.+++++++++++++||+|...... +.. ......|++
T Consensus 140 ~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~~---~~~~~~~~~ 215 (241)
T PRK05340 140 LFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQ-LQA---GGQPATRIV 215 (241)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceee-ccC---CCcceEEEE
Confidence 22222211000 00 0000000123567788899999999999999865432 110 011236788
Q ss_pred ECCC
Q 017588 297 IGDG 300 (369)
Q Consensus 297 ~G~g 300 (369)
.|..
T Consensus 216 lgdw 219 (241)
T PRK05340 216 LGDW 219 (241)
T ss_pred eCCC
Confidence 7764
No 43
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.27 E-value=4.7e-11 Score=99.84 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=36.4
Q ss_pred HhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhh-------cCCcEEEccCCCCCC
Q 017588 104 AKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLA-------SQRPWMVTQGNHEIE 153 (369)
Q Consensus 104 ~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~-------~~~P~~~v~GNHD~~ 153 (369)
...+||+|+++||+++.... ...|....+.++.+. ..+|++.++||||..
T Consensus 42 ~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 42 QRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 47799999999999987553 235654444444432 158999999999994
No 44
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.24 E-value=4.3e-11 Score=98.56 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhhc---CCcEEEccCCCCCC
Q 017588 103 VAKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLAS---QRPWMVTQGNHEIE 153 (369)
Q Consensus 103 i~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~~---~~P~~~v~GNHD~~ 153 (369)
+...+||+|+++||+++.... ...|..+...+..+.. ..|++.++||||..
T Consensus 34 i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 34 LWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 346799999999999986542 3456554444444332 48999999999993
No 45
>PRK09453 phosphodiesterase; Provisional
Probab=99.21 E-value=7.9e-10 Score=93.76 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=46.8
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCCh---H--HHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQ---P--LWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~---~--~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
+|++++||+|.... .+++++.+.+.++|.|+++||+++.+... . ......+.++++ ..|++.+.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY--ADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc--CCceEEEccCCcch
Confidence 58999999995532 24455566678999999999999754310 0 112233334333 36899999999973
No 46
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.19 E-value=3.4e-10 Score=95.21 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=90.5
Q ss_pred CeEEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHH--------------------------HHHHh
Q 017588 81 PIKFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWD--------------------------SFGRM 133 (369)
Q Consensus 81 ~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~--------------------------~~~~~ 133 (369)
+-++++++|.+.... .+++++.+...+||.|+++||+.........|. .|++.
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~ 84 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRI 84 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHH
Confidence 457899999864432 345666777889999999999987655555565 44444
Q ss_pred hHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCC-CC-------
Q 017588 134 VEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDF-DQ------- 205 (369)
Q Consensus 134 ~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~-~~------- 205 (369)
+..+ .+|.+++|||||....... + ..|......|..- . -...+.+--|..-++++.....- ..
T Consensus 85 L~~~--~~p~~~vPG~~Dap~~~~l-r---~a~~~e~v~p~~~-~--vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~Lr 155 (255)
T PF14582_consen 85 LGEL--GVPVFVVPGNMDAPERFFL-R---EAYNAEIVTPHIH-N--VHESFFFWKGEYLVAGMGGEITDDQREEEFKLR 155 (255)
T ss_dssp HHCC---SEEEEE--TTS-SHHHHH-H---HHHHCCCC-TTEE-E---CTCEEEETTTEEEEEE-SEEESSS-BCSSS-E
T ss_pred HHhc--CCcEEEecCCCCchHHHHH-H---HHhccceecccee-e--eeeeecccCCcEEEEecCccccCCCcccccccc
Confidence 4444 6999999999998311000 0 0000000011100 0 01122233344777777553210 00
Q ss_pred -ChhHHHHHHHHhccccCCCCCeEEEEeccCc-cccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 206 -NSDQYKWLEADLNKVDRGKTPWIVVLIHAPW-YNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 206 -~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
..-..+|..+.|...+. .-+|++.|.|| ...+..+. ..+.+..+++++++++|||||.|.-.-..
T Consensus 156 YP~weaey~lk~l~elk~---~r~IlLfhtpPd~~kg~~h~-------GS~~V~dlIk~~~P~ivl~Ghihe~~~~e 222 (255)
T PF14582_consen 156 YPAWEAEYSLKFLRELKD---YRKILLFHTPPDLHKGLIHV-------GSAAVRDLIKTYNPDIVLCGHIHESHGKE 222 (255)
T ss_dssp EEHHHHHHHHGGGGGCTS---SEEEEEESS-BTBCTCTBTT-------SBHHHHHHHHHH--SEEEE-SSS-EE--E
T ss_pred chHHHHHHHHHHHHhccc---ccEEEEEecCCccCCCcccc-------cHHHHHHHHHhcCCcEEEecccccchhhH
Confidence 11234555566666533 23788899998 33332222 23678899999999999999999765333
No 47
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.19 E-value=4.2e-10 Score=99.11 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=98.7
Q ss_pred EEEEEeeCCCCCCcHHHHHHHH----hcCCCeEEeccccCCCCCC---------------------hHH----HHHH--H
Q 017588 83 KFAIVGDLGQTGWTNSTLQHVA----KSNYDMLLLPGDLSYADLD---------------------QPL----WDSF--G 131 (369)
Q Consensus 83 ~f~~~gD~~~~~~~~~~~~~i~----~~~~d~vl~~GD~~~~~~~---------------------~~~----~~~~--~ 131 (369)
||++.|+.+...........+. +.+||++|++||.+|.+.. ... +..+ .
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5778888766655444455554 7899999999999998741 111 1111 1
Q ss_pred HhhHhhhcCCcEEEccCCCCCCCCCccc--------------cccccccccccccCcCCCC--CCCceeEEEEeCcE-EE
Q 017588 132 RMVEPLASQRPWMVTQGNHEIEKLPIIH--------------STKFTSYNARWRMPFEESG--SNSNLYYSFDAAGV-HV 194 (369)
Q Consensus 132 ~~~~~l~~~~P~~~v~GNHD~~~~~~~~--------------~~~~~~~~~~~~~p~~~~~--~~~~~~ys~~~g~~-~~ 194 (369)
..++.+.+.+|++.++.+||+..+.... ......|..++..+..... .....|+++.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 2355666789999999999996432210 0112233333332222211 23578999999996 99
Q ss_pred EEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcC--ceEEEecc
Q 017588 195 VMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQAR--VGVVFAGH 272 (369)
Q Consensus 195 i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvl~GH 272 (369)
++||++... . .+......++.+..++.+.+ -.++|||+
T Consensus 161 ~~lD~R~~R-------------------------------------d---~W~~~~~er~~l~~~~~~~~~~~vv~lSGD 200 (228)
T cd07389 161 ILLDTRTYR-------------------------------------D---SWDGYPAERERLLDLLAKRKIKNVVFLSGD 200 (228)
T ss_pred EEEeccccc-------------------------------------c---cccccHHHHHHHHHHHHHhCCCCeEEEecH
Confidence 999998754 1 11122356777877765553 23899999
Q ss_pred cccceeee
Q 017588 273 VHAYERFT 280 (369)
Q Consensus 273 ~H~~~r~~ 280 (369)
+|......
T Consensus 201 vH~~~~~~ 208 (228)
T cd07389 201 VHLAEASD 208 (228)
T ss_pred HHHHHHhh
Confidence 99866544
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.19 E-value=5.1e-10 Score=98.60 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=47.6
Q ss_pred EEEeeCCCCCCc----HHHHHHHHh--cCCCeEEeccccCCCC----CChHHHHHHHHhhHhhhc-CCcEEEccCCCCCC
Q 017588 85 AIVGDLGQTGWT----NSTLQHVAK--SNYDMLLLPGDLSYAD----LDQPLWDSFGRMVEPLAS-QRPWMVTQGNHEIE 153 (369)
Q Consensus 85 ~~~gD~~~~~~~----~~~~~~i~~--~~~d~vl~~GD~~~~~----~~~~~~~~~~~~~~~l~~-~~P~~~v~GNHD~~ 153 (369)
+++||+|.+... +..++.+.+ .+||+|+++||+++.- ......+.+.+.++.+.. ..|+++++||||..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 689999987542 345555543 3799999999999731 122223445556666654 48999999999984
No 49
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.18 E-value=3.3e-10 Score=93.84 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=42.8
Q ss_pred eEEEEEeeCCCCCCc-HHHHHHHHhc-CCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 82 IKFAIVGDLGQTGWT-NSTLQHVAKS-NYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-~~~~~~i~~~-~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
+|++++||+|..... +.+++.+... ++|.|+++||++. .+ ..+.++.+ ..|++.|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~----~~----~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS----PF----VLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC----HH----HHHHHHHh--CCceEEEccCCCc
Confidence 589999999965432 3344555555 8999999999982 12 22333333 4689999999998
No 50
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.18 E-value=4.8e-10 Score=94.64 Aligned_cols=179 Identities=21% Similarity=0.202 Sum_probs=107.9
Q ss_pred CCeEEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccC--CCCCChHHHHHHHHhhHhhh-cCCcEEEccCCCCCCCC
Q 017588 80 LPIKFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLS--YADLDQPLWDSFGRMVEPLA-SQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~--~~~~~~~~~~~~~~~~~~l~-~~~P~~~v~GNHD~~~~ 155 (369)
..+|+++++|.|.+.. ..+.++.+...++|+++.+||++ +-+.....-+.. .++.+. ..+|++.++||-|-..-
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~--~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELN--KLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhh--HHHHHHhcCCeEEEEcCCCChHHH
Confidence 4689999999997654 34555666677999999999999 444432221110 034444 35999999999777311
Q ss_pred CccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCC--C----CCCChhH-HHHHHHHhccccCCCCCeE
Q 017588 156 PIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYT--D----FDQNSDQ-YKWLEADLNKVDRGKTPWI 228 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~--~----~~~~~~q-~~Wl~~~L~~~~~~~~~~~ 228 (369)
.. ........ -.--+.+++++.|+.+-... . +...+++ +.-++..+.+... .-.
T Consensus 80 -------~~-~l~~~~~~--------v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~---~~~ 140 (226)
T COG2129 80 -------ID-VLKNAGVN--------VHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADN---PVN 140 (226)
T ss_pred -------HH-HHHhcccc--------cccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccC---cce
Confidence 10 00101000 01155677887787753211 1 1122333 3445555555432 113
Q ss_pred EEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 229 VVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 229 iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
|+++|.||+...... ..+........+.+++++.++.+.+|||.|-+.-..
T Consensus 141 Il~~HaPP~gt~~d~-~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d 191 (226)
T COG2129 141 ILLTHAPPYGTLLDT-PSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGID 191 (226)
T ss_pred EEEecCCCCCccccC-CCCccccchHHHHHHHHHhCCceEEEeeeccccccc
Confidence 999999999876542 111112456889999999999999999999855443
No 51
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.16 E-value=6.3e-09 Score=98.03 Aligned_cols=74 Identities=23% Similarity=0.196 Sum_probs=51.1
Q ss_pred CCeEEEEEeeCCCCCCc-------------HHHHHHHHhcCCCeEEeccccCCCCCCh-HHHHHHHHhhHh---------
Q 017588 80 LPIKFAIVGDLGQTGWT-------------NSTLQHVAKSNYDMLLLPGDLSYADLDQ-PLWDSFGRMVEP--------- 136 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GD~~~~~~~~-~~~~~~~~~~~~--------- 136 (369)
..+||++++|+|.+... .++++.+.+.++|+||++||+++...+. .....+.+.+++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 57899999999986321 2344455678999999999999876652 222223333332
Q ss_pred ---h----------------------hcCCcEEEccCCCCCC
Q 017588 137 ---L----------------------ASQRPWMVTQGNHEIE 153 (369)
Q Consensus 137 ---l----------------------~~~~P~~~v~GNHD~~ 153 (369)
+ ...+|++.+.||||..
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p 123 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDP 123 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCc
Confidence 1 1258999999999994
No 52
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.08 E-value=6.2e-10 Score=88.66 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=33.4
Q ss_pred EEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceee
Q 017588 228 IVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERF 279 (369)
Q Consensus 228 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~ 279 (369)
.|+++|+|++...... . ......+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~--~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGE--D-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCcc--c-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 5899999886433211 0 01123567778888999999999999975543
No 53
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.05 E-value=1.8e-09 Score=96.54 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=90.2
Q ss_pred eEEEEEeeCCCCC------Cc----HHHHHHHHhcCCC-eEEeccccCCCCCChH--HHHHHHHhhHhhhcCCcEEEccC
Q 017588 82 IKFAIVGDLGQTG------WT----NSTLQHVAKSNYD-MLLLPGDLSYADLDQP--LWDSFGRMVEPLASQRPWMVTQG 148 (369)
Q Consensus 82 ~~f~~~gD~~~~~------~~----~~~~~~i~~~~~d-~vl~~GD~~~~~~~~~--~~~~~~~~~~~l~~~~P~~~v~G 148 (369)
++|+.++|+|... .. ..+++++.+.+|| +++.+||++....... ......+.+.. .-.-+.++|
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~---~g~d~~~~G 77 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA---LGYDAVTIG 77 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---cCCCEEeec
Confidence 5899999999442 11 3566667677788 7899999997655322 11122233332 245567889
Q ss_pred CCCCCCCCccccccccccccccccCc---C----C---CCCCCceeEEEEeCcEEE--EEecCCCCCC----------CC
Q 017588 149 NHEIEKLPIIHSTKFTSYNARWRMPF---E----E---SGSNSNLYYSFDAAGVHV--VMLGSYTDFD----------QN 206 (369)
Q Consensus 149 NHD~~~~~~~~~~~~~~~~~~~~~p~---~----~---~~~~~~~~ys~~~g~~~~--i~lds~~~~~----------~~ 206 (369)
|||+..... .+.........|. + . .......|..++.+++++ +.+.+..... ..
T Consensus 78 NHe~d~g~~----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~ 153 (252)
T cd00845 78 NHEFDYGLD----ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPF 153 (252)
T ss_pred cccccccHH----HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCcee
Confidence 999953321 2221111111111 0 0 001123455678888544 4443321100 00
Q ss_pred hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEeccccccee
Q 017588 207 SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYER 278 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r 278 (369)
....+.+++..+... .+.+.+|++.|.|... ...+.+.+ .++|++|+||.|..+.
T Consensus 154 ~~~~~~~~~~~~~~~-~~~D~vIvl~H~g~~~--------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 154 EDLAEAVAVAEELLA-EGADVIILLSHLGLDD--------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred cCHHHHHHHHHHHHh-CCCCEEEEEeccCccc--------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 122333333222222 2567899999987432 01121111 5899999999998654
No 54
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.02 E-value=9.5e-09 Score=82.92 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=87.4
Q ss_pred CCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEE
Q 017588 107 NYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYS 186 (369)
Q Consensus 107 ~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys 186 (369)
.-|.|++.||+..+...++.-.. +..+..| .-.-+.+.||||++.. . .....+ .+|.. ..-..-.
T Consensus 43 ~eDiVllpGDiSWaM~l~ea~~D-l~~i~~L--PG~K~m~rGNHDYWw~-s-----~skl~n--~lp~~----l~~~n~~ 107 (230)
T COG1768 43 PEDIVLLPGDISWAMRLEEAEED-LRFIGDL--PGTKYMIRGNHDYWWS-S-----ISKLNN--ALPPI----LFYLNNG 107 (230)
T ss_pred hhhEEEecccchhheechhhhhh-hhhhhcC--CCcEEEEecCCccccc-h-----HHHHHh--hcCch----Hhhhccc
Confidence 45899999999987665432211 2333333 2345679999999632 1 111111 11110 0001112
Q ss_pred EEeCcEEEEEec---CC-CCCCCChh--------HHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHH
Q 017588 187 FDAAGVHVVMLG---SY-TDFDQNSD--------QYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRK 254 (369)
Q Consensus 187 ~~~g~~~~i~ld---s~-~~~~~~~~--------q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~ 254 (369)
|.++++.++..- +- .++....+ ....|+..+.++-++...-.|||+|.|+++.... . .
T Consensus 108 f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t----~------~ 177 (230)
T COG1768 108 FELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGT----P------G 177 (230)
T ss_pred eeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCC----C------c
Confidence 344444343331 11 11222222 2334444222222224455899999999876432 1 2
Q ss_pred HHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECC
Q 017588 255 AMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGD 299 (369)
Q Consensus 255 ~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~ 299 (369)
.+.+++++++|+.++.||.|.-.|-.+-. .+-+|+.|+.+.+
T Consensus 178 ~~sevlee~rv~~~lyGHlHgv~~p~~~~---s~v~Gi~y~Lvaa 219 (230)
T COG1768 178 PFSEVLEEGRVSKCLYGHLHGVPRPNIGF---SNVRGIEYMLVAA 219 (230)
T ss_pred chHHHHhhcceeeEEeeeccCCCCCCCCc---ccccCceEEEEec
Confidence 56678889999999999999877643211 1235788866543
No 55
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=99.01 E-value=1.2e-09 Score=91.88 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=32.3
Q ss_pred hcCCCeEEeccccCCCCCC-hHHHHHHHHhhHhhh--------------------cCCcEEEccCCCCCC
Q 017588 105 KSNYDMLLLPGDLSYADLD-QPLWDSFGRMVEPLA--------------------SQRPWMVTQGNHEIE 153 (369)
Q Consensus 105 ~~~~d~vl~~GD~~~~~~~-~~~~~~~~~~~~~l~--------------------~~~P~~~v~GNHD~~ 153 (369)
..+||.|+++||+++..-. +++|......+.++. ..+|++.++||||..
T Consensus 42 ~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG 111 (193)
T cd08164 42 WLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVG 111 (193)
T ss_pred hcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCC
Confidence 5799999999999975321 344533222222211 138999999999995
No 56
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.00 E-value=1e-08 Score=93.04 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=92.4
Q ss_pred eEEEEEeeCCCCCC-----------------cHHHHHHHHhcCCCeEEe-ccccCCCCCChHHH---------HHHHHhh
Q 017588 82 IKFAIVGDLGQTGW-----------------TNSTLQHVAKSNYDMLLL-PGDLSYADLDQPLW---------DSFGRMV 134 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-----------------~~~~~~~i~~~~~d~vl~-~GD~~~~~~~~~~~---------~~~~~~~ 134 (369)
++|+.++|+|.... ....++++.+.+|+.+++ +||++..... ..+ ....+.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPL-ADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHH-HHHhhhcccCCCChHHHHH
Confidence 47889999985321 133555666667888776 9999975431 111 1123333
Q ss_pred HhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcC-------C-CCCCCceeEEEEeC-cEEEEEecCCCCC--
Q 017588 135 EPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE-------E-SGSNSNLYYSFDAA-GVHVVMLGSYTDF-- 203 (369)
Q Consensus 135 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~-------~-~~~~~~~~ys~~~g-~~~~i~lds~~~~-- 203 (369)
+.+ -+-+.++||||+..... .+....+....|.- . .......|.-++.+ ++++-++.-....
T Consensus 80 n~~---g~d~~~lGNHe~d~g~~----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~ 152 (277)
T cd07410 80 NAL---GYDAGTLGNHEFNYGLD----YLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIP 152 (277)
T ss_pred Hhc---CCCEEeecccCcccCHH----HHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccc
Confidence 333 33467889999953211 22222221111110 0 01112456667888 8655555422110
Q ss_pred -------------CCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEE
Q 017588 204 -------------DQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVF 269 (369)
Q Consensus 204 -------------~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl 269 (369)
....+..++..+.|++ .+.+.+|+++|.+........ . ..+.....+.++ .++|++|
T Consensus 153 ~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~--~----~~~~~~~~la~~~~~vD~Il 223 (277)
T cd07410 153 NWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEES--L----TGENAAYELAEEVPGIDAIL 223 (277)
T ss_pred cccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccc--c----CCccHHHHHHhcCCCCcEEE
Confidence 0011223444444443 356789999998764321100 0 011222344444 4899999
Q ss_pred ecccccce
Q 017588 270 AGHVHAYE 277 (369)
Q Consensus 270 ~GH~H~~~ 277 (369)
+||.|...
T Consensus 224 gGHsH~~~ 231 (277)
T cd07410 224 TGHQHRRF 231 (277)
T ss_pred eCCCcccc
Confidence 99999754
No 57
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.99 E-value=3e-09 Score=92.87 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=97.2
Q ss_pred EEEeeCCCCCCcH---HHHHHHH-h---cCCCeEEeccccCCCCC--C---hHHHHH-HHHhhHhhhcCCcEEEccCCCC
Q 017588 85 AIVGDLGQTGWTN---STLQHVA-K---SNYDMLLLPGDLSYADL--D---QPLWDS-FGRMVEPLASQRPWMVTQGNHE 151 (369)
Q Consensus 85 ~~~gD~~~~~~~~---~~~~~i~-~---~~~d~vl~~GD~~~~~~--~---~~~~~~-~~~~~~~l~~~~P~~~v~GNHD 151 (369)
+++||.|.+.... .....+. . .+++.++++||+++.-. . ...... +...++.+....+++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4799999876532 2223322 2 48999999999996311 1 111111 2344444455699999999999
Q ss_pred CCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEE
Q 017588 152 IEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVL 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~ 231 (369)
...... + ........ .......+.+++.+++++-... ++.......|+...+..... .+.++.
T Consensus 81 ~~~~~~-----~---~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~~~~~~---~~~~~~ 143 (217)
T cd07398 81 FLLGDF-----F---AEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLGRNPYD---QLLFLN 143 (217)
T ss_pred HHHHhH-----H---HHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHhCcHHH---HHHHhc
Confidence 942211 0 00000000 0011215677888888886532 23334444444443222100 000000
Q ss_pred eccCc---------cc----cCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEEC
Q 017588 232 IHAPW---------YN----TNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIG 298 (369)
Q Consensus 232 ~H~P~---------~~----~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G 298 (369)
.+.+. .. ...............+.+..++++++++++++||+|...... ..++.|+++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~--------~~~~~~~n~G 215 (217)
T cd07398 144 RPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHE--------LDGKLYINLG 215 (217)
T ss_pred chHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEE--------ECCEEEEECC
Confidence 00000 00 000000000112344566677788899999999999876554 2377888887
Q ss_pred C
Q 017588 299 D 299 (369)
Q Consensus 299 ~ 299 (369)
+
T Consensus 216 ~ 216 (217)
T cd07398 216 D 216 (217)
T ss_pred C
Confidence 5
No 58
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.97 E-value=8.2e-08 Score=89.42 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=48.2
Q ss_pred eEEEEEeeCCCCCCc-------------HHHHHHHHhcCCCeEEeccccCCCCC-Ch-HHHHHHHH-hhHhhhc-CCcEE
Q 017588 82 IKFAIVGDLGQTGWT-------------NSTLQHVAKSNYDMLLLPGDLSYADL-DQ-PLWDSFGR-MVEPLAS-QRPWM 144 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GD~~~~~~-~~-~~~~~~~~-~~~~l~~-~~P~~ 144 (369)
+||+++||+|.+... .++++.+.+.+||+||++||+++... .. .....+.+ .++.+.. .+|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 589999999986432 22344445789999999999997642 22 22222222 2344432 59999
Q ss_pred EccCCCCCC
Q 017588 145 VTQGNHEIE 153 (369)
Q Consensus 145 ~v~GNHD~~ 153 (369)
.++||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999984
No 59
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.94 E-value=2.4e-08 Score=89.45 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=89.2
Q ss_pred eEEEEEeeCCCCCC-----------cHHHHHHHHhcCCC-eEEeccccCCCCCChHH--HHHHHHhhHhhhcCCcEEEcc
Q 017588 82 IKFAIVGDLGQTGW-----------TNSTLQHVAKSNYD-MLLLPGDLSYADLDQPL--WDSFGRMVEPLASQRPWMVTQ 147 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-----------~~~~~~~i~~~~~d-~vl~~GD~~~~~~~~~~--~~~~~~~~~~l~~~~P~~~v~ 147 (369)
++|+.++|.|.-.. ....++++++.+++ +++.+||++........ .....+.++.+ ..-+.++
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l---~~d~~~~ 77 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL---GVDLACF 77 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc---CCcEEee
Confidence 47888888873111 13455566666788 99999999965432111 11223333333 2346689
Q ss_pred CCCCCCCCCccccccccccccccccCcC-------CC---CCCCceeEEEEeCcEEE--EEecCCCCC------CC---C
Q 017588 148 GNHEIEKLPIIHSTKFTSYNARWRMPFE-------ES---GSNSNLYYSFDAAGVHV--VMLGSYTDF------DQ---N 206 (369)
Q Consensus 148 GNHD~~~~~~~~~~~~~~~~~~~~~p~~-------~~---~~~~~~~ys~~~g~~~~--i~lds~~~~------~~---~ 206 (369)
||||+..... .+....+....|.- .. ....+.|..++.+++++ +.+.+.... .. .
T Consensus 78 GNHefd~g~~----~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~ 153 (257)
T cd07406 78 GNHEFDFGED----QLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRY 153 (257)
T ss_pred cccccccCHH----HHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceE
Confidence 9999953221 22211111111110 00 01125677788898554 444432110 00 1
Q ss_pred hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEEecccccce
Q 017588 207 SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVFAGHVHAYE 277 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~~~ 277 (369)
..-.+.+++.+++..+.+.+.+|+++|.+... . . ++.++ .++|++|+||.|..+
T Consensus 154 ~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~-------------d-~---~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 154 RDYVETARELVDELREQGADLIIALTHMRLPN-------------D-K---RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEEeccCchh-------------h-H---HHHHhCCCCceEEecccceeE
Confidence 12233344433333223678899999987421 1 1 22233 489999999999876
No 60
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=2.4e-09 Score=91.41 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=98.9
Q ss_pred EEEeeCCCCCCcHH----HHHHHHh--cCCCeEEeccccCCCCC----ChHHHHHHHHhhHhhhcC-CcEEEccCCCCCC
Q 017588 85 AIVGDLGQTGWTNS----TLQHVAK--SNYDMLLLPGDLSYADL----DQPLWDSFGRMVEPLASQ-RPWMVTQGNHEIE 153 (369)
Q Consensus 85 ~~~gD~~~~~~~~~----~~~~i~~--~~~d~vl~~GD~~~~~~----~~~~~~~~~~~~~~l~~~-~P~~~v~GNHD~~ 153 (369)
++|||.|.+..... .++.+.. .++|.+.++||+++.-. +.+.-++....+..+..+ +|+|+++||||+.
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 36899998854332 3344443 35599999999996421 222223334444555544 9999999999983
Q ss_pred CCCccccccccccccccc-cCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEe
Q 017588 154 KLPIIHSTKFTSYNARWR-MPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLI 232 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~ 232 (369)
.... +...+. +- -.+.+-..++-+-++.++-.- .+.....++.|+.......-. ..++.
T Consensus 81 l~~~--------f~~~~g~~~------l~~~~~~~~l~g~~~Ll~HGD-~f~t~~~~y~~~r~~~~~~~~-----~~lfl 140 (237)
T COG2908 81 LGKR--------FAQEAGGMT------LLPDPIVLDLYGKRILLAHGD-TFCTDDRAYQWFRYKVHWAWL-----QLLFL 140 (237)
T ss_pred HHHH--------HHhhcCceE------EcCcceeeeecCcEEEEEeCC-cccchHHHHHHHHHHcccHHH-----HHHHH
Confidence 2111 111111 00 012233344445555555321 123345555555543322100 11222
Q ss_pred ccCc----------cccCCCCCC-Ccch----HHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEE
Q 017588 233 HAPW----------YNTNTAHQG-EVES----EGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITI 297 (369)
Q Consensus 233 H~P~----------~~~~~~~~~-~~~~----~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~ 297 (369)
+.|. ++.+.+... ...+ ....+.....+++++|+.+++||+|...... -.++.||+.
T Consensus 141 nl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~--------i~~~~yi~l 212 (237)
T COG2908 141 NLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN--------IPGITYINL 212 (237)
T ss_pred HhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc--------CCCceEEec
Confidence 2222 111100000 0000 1344566778889999999999999865443 236999999
Q ss_pred CCCC
Q 017588 298 GDGG 301 (369)
Q Consensus 298 G~gG 301 (369)
|+..
T Consensus 213 GdW~ 216 (237)
T COG2908 213 GDWV 216 (237)
T ss_pred Ccch
Confidence 9764
No 61
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.92 E-value=7.9e-08 Score=79.76 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=99.0
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHh-hhcCCcEEEccCCCCCCCCCccc
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEP-LASQRPWMVTQGNHEIEKLPIIH 159 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~-l~~~~P~~~v~GNHD~~~~~~~~ 159 (369)
++|+++||+|.... ..+..+.....++|+|||+||.+...... .+ +. + ..+++.|.||.|.....
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~-~l-------~~~~--~~~i~~V~GN~D~~~~~--- 68 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTLD-AL-------EGGL--AAKLIAVRGNCDGEVDQ--- 68 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccchH-Hh-------hccc--ccceEEEEccCCCcccc---
Confidence 68999999997764 34455555678999999999999754421 11 11 2 57999999999994210
Q ss_pred cccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCcccc
Q 017588 160 STKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNT 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~ 239 (369)
. ..|. +..+ +.+ ..+|.++|--.+..
T Consensus 69 --------~--~~p~---------------------------------------~~~~-~~~----g~ki~l~HGh~~~~ 94 (172)
T COG0622 69 --------E--ELPE---------------------------------------ELVL-EVG----GVKIFLTHGHLYFV 94 (172)
T ss_pred --------c--cCCh---------------------------------------hHeE-EEC----CEEEEEECCCcccc
Confidence 0 0111 0111 111 12678888533321
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCCCCCCCccccCCCCCCCcee
Q 017588 240 NTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGNREGLASRFMNPQPAISV 319 (369)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~~~~~~~~~~~~p~~~~ 319 (369)
. .....+..+-++.++|++++||+|...... .+++++++-|+...+.+ . .
T Consensus 95 ~----------~~~~~l~~la~~~~~Dvli~GHTH~p~~~~--------~~~i~~vNPGS~s~pr~-----~--~----- 144 (172)
T COG0622 95 K----------TDLSLLEYLAKELGADVLIFGHTHKPVAEK--------VGGILLVNPGSVSGPRG-----G--N----- 144 (172)
T ss_pred c----------cCHHHHHHHHHhcCCCEEEECCCCcccEEE--------ECCEEEEcCCCcCCCCC-----C--C-----
Confidence 1 112456666677799999999999876655 35788888776543311 0 1
Q ss_pred eEecccceEEEEEEeCceEEEEEEE
Q 017588 320 FREASFGHGQLEVVNATHAQWTWHR 344 (369)
Q Consensus 320 ~~~~~~g~~~l~v~~~~~~~~~~~~ 344 (369)
.-+|+.|++.+ ..+...+..
T Consensus 145 ----~~sy~il~~~~-~~~~~~~~~ 164 (172)
T COG0622 145 ----PASYAILDVDN-LEVEVLFLE 164 (172)
T ss_pred ----CcEEEEEEcCC-CEEEEEEee
Confidence 12688888743 356665554
No 62
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.86 E-value=1.3e-07 Score=84.29 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=96.3
Q ss_pred EEEEeeCCCCCCcHHHHH---HHH---hcCCCeEEeccccCCCCCCh-----------HHHHHHHHhhHhhh-cCCcEEE
Q 017588 84 FAIVGDLGQTGWTNSTLQ---HVA---KSNYDMLLLPGDLSYADLDQ-----------PLWDSFGRMVEPLA-SQRPWMV 145 (369)
Q Consensus 84 f~~~gD~~~~~~~~~~~~---~i~---~~~~d~vl~~GD~~~~~~~~-----------~~~~~~~~~~~~l~-~~~P~~~ 145 (369)
|++.||+|.. ...+.+ .++ ..++|++|++||+....... ..+..|.+.+.... ..+|+++
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 5789999853 333333 222 35799999999996432211 12233334333322 2478899
Q ss_pred ccCCCCCCCCCccccccccccccccccCcCCCCCCCcee-----EEEEeCcEEEEEecCCC---CCCC--------ChhH
Q 017588 146 TQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLY-----YSFDAAGVHVVMLGSYT---DFDQ--------NSDQ 209 (369)
Q Consensus 146 v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----ys~~~g~~~~i~lds~~---~~~~--------~~~q 209 (369)
|.||||... .+.. ++..+ ....+.+ ..+.+++++|..|.... ++.. ...+
T Consensus 79 i~GNHE~~~-------~l~~------l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~ 144 (262)
T cd00844 79 IGGNHEASN-------YLWE------LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDT 144 (262)
T ss_pred ECCCCCCHH-------HHHh------hcCCC-eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHH
Confidence 999999621 1111 11100 0011222 34567899999987521 1110 1222
Q ss_pred HHHH-------HHHhccccCCCCCeEEEEeccCccccCCCCCCC------------cch-HHHHHHHHHHHHhcCceEEE
Q 017588 210 YKWL-------EADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGE------------VES-EGMRKAMEGLIHQARVGVVF 269 (369)
Q Consensus 210 ~~Wl-------~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~------------~~~-~~~~~~l~~l~~~~~v~lvl 269 (369)
+..+ ...|..... .. -|+++|.||.......... ... ......+..++++.++++.|
T Consensus 145 ~rs~y~~r~~~~~kl~~~~~-~v--DIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf 221 (262)
T cd00844 145 KRSAYHVRNIEVFKLKQLKQ-PI--DIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWF 221 (262)
T ss_pred HHHhhhhhHHHHHHHHhcCC-CC--cEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEE
Confidence 2221 011222211 23 4999999987643321100 000 12346788899999999999
Q ss_pred eccccc-ceeeeec
Q 017588 270 AGHVHA-YERFTRV 282 (369)
Q Consensus 270 ~GH~H~-~~r~~~~ 282 (369)
+||.|. |++..|.
T Consensus 222 ~gH~H~~f~~~~~~ 235 (262)
T cd00844 222 SAHLHVKFAALVPH 235 (262)
T ss_pred EecCCcccceecCC
Confidence 999998 5655543
No 63
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.7e-08 Score=94.75 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=54.1
Q ss_pred eEEEEEeeCCCC-CCc-------------HHHHHHHHhcCCCeEEeccccCCCCCChHH-HHHHHHhhHhhhc-CCcEEE
Q 017588 82 IKFAIVGDLGQT-GWT-------------NSTLQHVAKSNYDMLLLPGDLSYADLDQPL-WDSFGRMVEPLAS-QRPWMV 145 (369)
Q Consensus 82 ~~f~~~gD~~~~-~~~-------------~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~-~~~~~~~~~~l~~-~~P~~~ 145 (369)
+||++.+|+|.+ ... ..+++.+.+.++||||++||+++...+... -..+.+.++++.. .+|+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 589999999988 221 235555668899999999999988665332 3445666666653 599999
Q ss_pred ccCCCCCC
Q 017588 146 TQGNHEIE 153 (369)
Q Consensus 146 v~GNHD~~ 153 (369)
+.||||..
T Consensus 81 I~GNHD~~ 88 (390)
T COG0420 81 IAGNHDSP 88 (390)
T ss_pred ecCCCCch
Confidence 99999994
No 64
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.82 E-value=8.1e-08 Score=87.43 Aligned_cols=203 Identities=19% Similarity=0.207 Sum_probs=96.7
Q ss_pred eEEEEEeeCCCCCC---------------cHHHHHHHHhcCCC-eEEeccccCCCCCChHHH---HHHHHhhHhhhcCCc
Q 017588 82 IKFAIVGDLGQTGW---------------TNSTLQHVAKSNYD-MLLLPGDLSYADLDQPLW---DSFGRMVEPLASQRP 142 (369)
Q Consensus 82 ~~f~~~gD~~~~~~---------------~~~~~~~i~~~~~d-~vl~~GD~~~~~~~~~~~---~~~~~~~~~l~~~~P 142 (369)
++|+.++|+|.... ....++++.+.+++ ++|.+||++........+ ....+.+..+ -.
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~---g~ 77 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAM---GV 77 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhh---CC
Confidence 47899999984311 12344455545554 899999999644321111 1122333332 22
Q ss_pred EEEccCCCCCCCCCcccccccccccc----------------ccccCcC-------CC-CCCCceeEEEEeCcEEEEEec
Q 017588 143 WMVTQGNHEIEKLPIIHSTKFTSYNA----------------RWRMPFE-------ES-GSNSNLYYSFDAAGVHVVMLG 198 (369)
Q Consensus 143 ~~~v~GNHD~~~~~~~~~~~~~~~~~----------------~~~~p~~-------~~-~~~~~~~ys~~~g~~~~i~ld 198 (369)
=+.++||||++.... .+....+ .-..|.- .. ......|.-++.+++++-++.
T Consensus 78 Da~t~GNHefd~G~~----~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviG 153 (288)
T cd07412 78 DASAVGNHEFDEGYA----ELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIG 153 (288)
T ss_pred eeeeecccccccCHH----HHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEe
Confidence 257889999953221 1111100 0001110 00 011134555788885554443
Q ss_pred CCCC---C--C-------CChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHh--cC
Q 017588 199 SYTD---F--D-------QNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQ--AR 264 (369)
Q Consensus 199 s~~~---~--~-------~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~ 264 (369)
-... . . ....-.+-+++.+++.+..+.+.+|+++|............. .......+++.+ .+
T Consensus 154 l~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 229 (288)
T cd07412 154 AVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDTCS----AASGPIADIVNRLDPD 229 (288)
T ss_pred ecCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcccc----ccChhHHHHHhhcCCC
Confidence 2110 0 0 012223344444444432357789999997754321111000 011122334444 37
Q ss_pred ceEEEecccccceeeeeccCCccCCCCceEEEECCC
Q 017588 265 VGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDG 300 (369)
Q Consensus 265 v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~g 300 (369)
+|++|+||.|...... . ...+++..+.+|+-
T Consensus 230 iD~IlgGHsH~~~~~~-~----~~~~~~~v~q~g~~ 260 (288)
T cd07412 230 VDVVFAGHTHQAYNCT-V----PAGNPRLVTQAGSY 260 (288)
T ss_pred CCEEEeCccCcccccc-c----cCcCCEEEEecChh
Confidence 9999999999865431 0 01245655555543
No 65
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.74 E-value=1.1e-07 Score=85.28 Aligned_cols=180 Identities=18% Similarity=0.160 Sum_probs=88.1
Q ss_pred eEEEEEeeCCCCCC--------c---HHHHHHHHhcCCCeEEeccccCCCCCChHH--HHHHHHhhHhhhcCCcEEEccC
Q 017588 82 IKFAIVGDLGQTGW--------T---NSTLQHVAKSNYDMLLLPGDLSYADLDQPL--WDSFGRMVEPLASQRPWMVTQG 148 (369)
Q Consensus 82 ~~f~~~gD~~~~~~--------~---~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~--~~~~~~~~~~l~~~~P~~~v~G 148 (369)
++|+.++|+|.... . ...++++++.++++++.+||++........ .....+.+..+ ... +.++|
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~--g~d-~~~~G 77 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAV--GYD-AVTPG 77 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhc--CCc-EEccc
Confidence 47899999985321 1 234444544467899999999875332111 01122223322 234 45789
Q ss_pred CCCCCCCCccccccccccccccccCcC-------CCCC-CCceeEEEEeC-c--EEEEEecCCCC-C--CC-------Ch
Q 017588 149 NHEIEKLPIIHSTKFTSYNARWRMPFE-------ESGS-NSNLYYSFDAA-G--VHVVMLGSYTD-F--DQ-------NS 207 (369)
Q Consensus 149 NHD~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~-~~~~~ys~~~g-~--~~~i~lds~~~-~--~~-------~~ 207 (369)
|||++.... .+..+.+.+..|.- ..+. .-..|--++.+ + +-|+.+-+... . .+ ..
T Consensus 78 NHefd~G~~----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T cd07408 78 NHEFDYGLD----RLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFE 153 (257)
T ss_pred cccccCCHH----HHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEe
Confidence 999953211 22222222222221 0010 11234455777 6 45555544210 0 00 01
Q ss_pred hHHHHHHHH-hccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEEecccccceee
Q 017588 208 DQYKWLEAD-LNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVFAGHVHAYERF 279 (369)
Q Consensus 208 ~q~~Wl~~~-L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~~~r~ 279 (369)
.-.+-+++. .....+.+.+.+|+++|.+...... .. .... +.++ .++|++|.||.|.....
T Consensus 154 d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~----~~----~~~~---la~~~~giDvIigGH~H~~~~~ 216 (257)
T cd07408 154 DPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSS----PW----TSTE---LAANVTGIDLIIDGHSHTTIEI 216 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCC----Cc----cHHH---HHHhCCCceEEEeCCCcccccC
Confidence 122223333 2222223577899999988643211 11 1112 2223 48999999999986543
No 66
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.71 E-value=1.8e-07 Score=91.40 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCCeEEEEEeeCCCCCCc------HHHHHHHH---------hcCCCeEEeccccCCCCCC-------------hHHHHHH
Q 017588 79 QLPIKFAIVGDLGQTGWT------NSTLQHVA---------KSNYDMLLLPGDLSYADLD-------------QPLWDSF 130 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~------~~~~~~i~---------~~~~d~vl~~GD~~~~~~~-------------~~~~~~~ 130 (369)
..+.+++++||.|.+... ..+++.+. +.+++.++++||+++..+. ....+.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 467899999999976542 23344444 5679999999999974221 0122345
Q ss_pred HHhhHhhhcCCcEEEccCCCCCC
Q 017588 131 GRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 131 ~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
.+.++.+...+|+++++||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 56667776679999999999984
No 67
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.71 E-value=2.7e-07 Score=83.05 Aligned_cols=157 Identities=19% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHhc-CCCeE-EeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcC
Q 017588 98 STLQHVAKS-NYDML-LLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE 175 (369)
Q Consensus 98 ~~~~~i~~~-~~d~v-l~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~ 175 (369)
..++++++. ++|.+ +.+||++..... ..+......++ ++..+++.++.||||+..... .+....+.+..|.-
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~-~l~~~g~da~~GNHefd~g~~----~l~~~~~~~~~~~l 113 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVD-ALNALGVDAMVGHWEFTYGPE----RVRELFGRLNWPFL 113 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHH-HHHhhCCeEEecccccccCHH----HHHHHHhhCCCCEE
Confidence 345555566 88877 579999975542 12211111222 222355555559999953322 22222222222211
Q ss_pred -------CCC-CCCceeEEEEeCcE--EEEEecCCCCCC--C--------ChhHHHHHHHHhccc-cCCCCCeEEEEecc
Q 017588 176 -------ESG-SNSNLYYSFDAAGV--HVVMLGSYTDFD--Q--------NSDQYKWLEADLNKV-DRGKTPWIVVLIHA 234 (369)
Q Consensus 176 -------~~~-~~~~~~ys~~~g~~--~~i~lds~~~~~--~--------~~~q~~Wl~~~L~~~-~~~~~~~~iv~~H~ 234 (369)
..+ .....|..++.+++ .+|.+.+..... . .....+.+++.+.+. +..+.+.+|+++|-
T Consensus 114 ~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~ 193 (264)
T cd07411 114 AANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHN 193 (264)
T ss_pred EEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 000 11134556788885 455554321100 0 122344444443332 12356789999998
Q ss_pred CccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEEecccccce
Q 017588 235 PWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVFAGHVHAYE 277 (369)
Q Consensus 235 P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~~~ 277 (369)
+... . . .+.++ .++|++|+||.|...
T Consensus 194 g~~~-------------~-~---~la~~~~~iDlilgGH~H~~~ 220 (264)
T cd07411 194 GLPV-------------D-V---ELAERVPGIDVILSGHTHERT 220 (264)
T ss_pred Cchh-------------h-H---HHHhcCCCCcEEEeCcccccc
Confidence 7421 0 1 12233 479999999999753
No 68
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.65 E-value=2.7e-06 Score=75.62 Aligned_cols=192 Identities=18% Similarity=0.174 Sum_probs=104.2
Q ss_pred eEEEEEeeCCCCCCcH----HHHHHHH-hcCCCeEEeccccCCCC-CChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCC
Q 017588 82 IKFAIVGDLGQTGWTN----STLQHVA-KSNYDMLLLPGDLSYAD-LDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~~----~~~~~i~-~~~~d~vl~~GD~~~~~-~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 155 (369)
+||+++||.= +.... ..+..+. +.++||+|..||++-.+ +..+. ..+.+... .+-++ +.|||+++..
T Consensus 1 m~ilfiGDi~-G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~---~~~~L~~~--GvDvi-T~GNH~~Dkg 73 (266)
T TIGR00282 1 IKFLFIGDVY-GKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLK---IYEFLKQS--GVNYI-TMGNHTWFQK 73 (266)
T ss_pred CeEEEEEecC-CHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHH---HHHHHHhc--CCCEE-EccchhccCc
Confidence 5899999983 33223 3344443 55789999999999654 22111 12222322 35665 4499999633
Q ss_pred Cccc-cccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCC--CCCCC--ChhHHHHHHHHhccccCCCCCeEEE
Q 017588 156 PIIH-STKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSY--TDFDQ--NSDQYKWLEADLNKVDRGKTPWIVV 230 (369)
Q Consensus 156 ~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~--~~~~~--~~~q~~Wl~~~L~~~~~~~~~~~iv 230 (369)
.... -.......+..+.|. ...+..+..+..++.++-+++-. ....+ ...-.+-+++.+++.+. +.+.+||
T Consensus 74 e~~~~i~~~~~~lrpanyp~---~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk~-~~d~IIV 149 (266)
T TIGR00282 74 LILDVVINQKDLVRPLNFDT---SFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLKK-DCDLIFV 149 (266)
T ss_pred HHHHHHhccccccccCCCCC---CCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhhc-CCCEEEE
Confidence 2100 000011111112221 12234566678888666665532 11111 12233345555554443 4678999
Q ss_pred EeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEE-ECCCCCC
Q 017588 231 LIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHIT-IGDGGNR 303 (369)
Q Consensus 231 ~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~-~G~gG~~ 303 (369)
.+|.-. ...+.....+-+.+|++|+.-|+|..-.-..+. |+|+.||+ .|--|..
T Consensus 150 d~Haea--------------tsEK~a~~~~ldg~vsaVvGtHtHV~TaD~~il-----~~gtayitD~Gm~G~~ 204 (266)
T TIGR00282 150 DFHAET--------------TSEKNAFGMAFDGYVTAVVGTHTHVPTADLRIL-----PKGTAYITDVGMTGPF 204 (266)
T ss_pred EeCCCC--------------HHHHHHHHHHhCCCccEEEeCCCCCCCCcceeC-----CCCCEEEecCCcccCc
Confidence 999642 112445666777899999999999753333222 68999987 4444443
No 69
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.65 E-value=3.2e-07 Score=83.24 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=78.7
Q ss_pred HHHHHHhcCCC-eEEeccccCCCCCChHH--HHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcC
Q 017588 99 TLQHVAKSNYD-MLLLPGDLSYADLDQPL--WDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE 175 (369)
Q Consensus 99 ~~~~i~~~~~d-~vl~~GD~~~~~~~~~~--~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~ 175 (369)
.++++++.+++ +++.+||++........ .+...+.+..+ ... +.++||||++.... .+..+.+....|.-
T Consensus 40 ~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~--g~D-~~~lGNHefd~G~~----~l~~~~~~~~~p~l 112 (281)
T cd07409 40 LVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL--GYD-AMTLGNHEFDDGVE----GLAPFLNNLKFPVL 112 (281)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc--CCC-EEEeccccccCCHH----HHHHHHHhCCCCEE
Confidence 45555555676 56669999875432111 11222333333 234 45789999964322 22222222222211
Q ss_pred C------C-----CCCCceeEEEEeCcEEE--EEecCCCC--CC---C---ChhHHHHHHHHhccccCCCCCeEEEEecc
Q 017588 176 E------S-----GSNSNLYYSFDAAGVHV--VMLGSYTD--FD---Q---NSDQYKWLEADLNKVDRGKTPWIVVLIHA 234 (369)
Q Consensus 176 ~------~-----~~~~~~~ys~~~g~~~~--i~lds~~~--~~---~---~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~ 234 (369)
. . ......|..++.+++++ |.+-+... .. . .....+.+++.+++.+.++.+.+|+++|.
T Consensus 113 ~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~ 192 (281)
T cd07409 113 SANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHS 192 (281)
T ss_pred EEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 0 0 00113456678888554 44433111 00 0 12334556665555543357778999997
Q ss_pred CccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEEecccccce
Q 017588 235 PWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVFAGHVHAYE 277 (369)
Q Consensus 235 P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~~~ 277 (369)
+.-. . . .+.++ .++|++|+||.|...
T Consensus 193 G~~~-------------d-~---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 193 GYEV-------------D-K---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred Cchh-------------H-H---HHHHcCCCCcEEEeCCcCccc
Confidence 6310 1 1 22233 489999999999864
No 70
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.64 E-value=1.7e-06 Score=76.60 Aligned_cols=181 Identities=17% Similarity=0.201 Sum_probs=95.8
Q ss_pred EEEEEeeCCCCCCc----HHHHHHHH-hcCCCeEEeccccCCCCC-ChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCC
Q 017588 83 KFAIVGDLGQTGWT----NSTLQHVA-KSNYDMLLLPGDLSYADL-DQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLP 156 (369)
Q Consensus 83 ~f~~~gD~~~~~~~----~~~~~~i~-~~~~d~vl~~GD~~~~~~-~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~ 156 (369)
|++++||.= +... ...+.++. +.++||+|..||++-.+. ... ...+.+..+ ..-+ ++.|||+++...
T Consensus 1 ~ilfigdi~-g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~~~--G~D~-iTlGNH~fD~ge 73 (255)
T cd07382 1 KILFIGDIV-GKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELLSA--GVDV-ITMGNHTWDKKE 73 (255)
T ss_pred CEEEEEeCC-CHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHHhc--CCCE-EEecccccCcch
Confidence 588999982 2222 23344443 457999999999987552 221 122333332 2444 566999995431
Q ss_pred cccccccccccccc---ccCcCC-CCCCCceeEEEEeCcEEEEEecCC--CCCCCChhHHHHHHHHhccccCCCCCeEEE
Q 017588 157 IIHSTKFTSYNARW---RMPFEE-SGSNSNLYYSFDAAGVHVVMLGSY--TDFDQNSDQYKWLEADLNKVDRGKTPWIVV 230 (369)
Q Consensus 157 ~~~~~~~~~~~~~~---~~p~~~-~~~~~~~~ys~~~g~~~~i~lds~--~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv 230 (369)
...+.+.. ..|.+- ...+...|..++.+++++-+++-. ........-.+-+++.+++.+. +.+.+||
T Consensus 74 ------l~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D~IIV 146 (255)
T cd07382 74 ------ILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EADIIFV 146 (255)
T ss_pred ------HHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCCEEEE
Confidence 11111111 112111 112234577788888666555432 1111112223445555555543 5677999
Q ss_pred EeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEE
Q 017588 231 LIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHIT 296 (369)
Q Consensus 231 ~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~ 296 (369)
.+|.-.. .....+.. .-..+||+++.||+|..-.-..+. |+|+.|++
T Consensus 147 ~~H~g~t-------------sEk~ala~-~ldg~VdvIvGtHTHv~t~d~~il-----~~gTa~it 193 (255)
T cd07382 147 DFHAEAT-------------SEKIALGW-YLDGRVSAVVGTHTHVQTADERIL-----PGGTAYIT 193 (255)
T ss_pred EECCCCC-------------HHHHHHHH-hCCCCceEEEeCCCCccCCccEEe-----eCCeEEEe
Confidence 9997421 11122221 113369999999999753322211 57898887
No 71
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.62 E-value=2.4e-07 Score=85.71 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=75.9
Q ss_pred CCCeEEEEEeeCCCCCCc------------------HHHHHHH-HhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhh
Q 017588 79 QLPIKFAIVGDLGQTGWT------------------NSTLQHV-AKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPL 137 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~------------------~~~~~~i-~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l 137 (369)
...+|++.++|.|.-+.. .+....+ .-.+||.++++||+++.+.. +++|..-.+.++++
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 578999999999875521 1111111 25799999999999997654 56776554555555
Q ss_pred hc---CCcEEEccCCCCCCCCCccccccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCC
Q 017588 138 AS---QRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTD 202 (369)
Q Consensus 138 ~~---~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~ 202 (369)
.. .+|.+.++||||.+.... .......+|..-. ++...+|+.+++.|+++|+..-
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~----~~~~~i~Rfe~~f------g~~~r~f~v~~~tf~~~d~~~l 183 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNE----LIPEWIDRFESVF------GPTERRFDVGNLTFVMFDSNAL 183 (410)
T ss_pred hCCCCCCeeEEeCCccccccccc----cchhHHHHHHHhh------cchhhhhccCCceeEEeeehhh
Confidence 43 499999999999964322 2222333432111 2356779999999999998643
No 72
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.60 E-value=1.2e-06 Score=77.74 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEEeeCCCCCCc--H----HHHHHHHhc-----CCCeEEeccccCCCCCC-------------hHHHHHHHHhhHhhhcC
Q 017588 85 AIVGDLGQTGWT--N----STLQHVAKS-----NYDMLLLPGDLSYADLD-------------QPLWDSFGRMVEPLASQ 140 (369)
Q Consensus 85 ~~~gD~~~~~~~--~----~~~~~i~~~-----~~d~vl~~GD~~~~~~~-------------~~~~~~~~~~~~~l~~~ 140 (369)
+++||.|.+... . .+++.+... ++|.|+++||+++.... ...+..+.+.++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 679999976432 2 233333332 56999999999975310 11234455667777667
Q ss_pred CcEEEccCCCCCC
Q 017588 141 RPWMVTQGNHEIE 153 (369)
Q Consensus 141 ~P~~~v~GNHD~~ 153 (369)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999994
No 73
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=1.9e-07 Score=83.34 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=51.5
Q ss_pred eEEEEEeeCCCCCCc-------------HHHHHHHHhcCCCeEEeccccCCCCCChH-HHHHHHHhhHhhhc-C-CcEEE
Q 017588 82 IKFAIVGDLGQTGWT-------------NSTLQHVAKSNYDMLLLPGDLSYADLDQP-LWDSFGRMVEPLAS-Q-RPWMV 145 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GD~~~~~~~~~-~~~~~~~~~~~l~~-~-~P~~~ 145 (369)
+||++++|+|.+... ..+++.+.+.++|+||++||+++...... ....+.+.++.+.. . +|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 589999999986431 23444455778999999999998765432 23334555565543 3 89999
Q ss_pred ccCCCCCC
Q 017588 146 TQGNHEIE 153 (369)
Q Consensus 146 v~GNHD~~ 153 (369)
++||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999984
No 74
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.58 E-value=9.9e-08 Score=82.61 Aligned_cols=64 Identities=25% Similarity=0.252 Sum_probs=41.6
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHH-hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVA-KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
|++++||+|.... .+++++.+. ..++|.++++||+++.+.... +.++.+. ..+++.+.||||..
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~------~~~~~l~-~~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESL------ACLELLL-EPWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHH------HHHHHHh-cCCEEEeECCChHH
Confidence 6899999995432 123333333 246899999999998765432 2222222 24689999999984
No 75
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.52 E-value=1.8e-06 Score=92.94 Aligned_cols=182 Identities=19% Similarity=0.188 Sum_probs=93.2
Q ss_pred CCeEEEEEeeCCCCCCc----HHHHHHHHhcCCCeEEe-ccccCCCCCChHH--HHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 80 LPIKFAIVGDLGQTGWT----NSTLQHVAKSNYDMLLL-PGDLSYADLDQPL--WDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~~----~~~~~~i~~~~~d~vl~-~GD~~~~~~~~~~--~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
.+++|+.++|+|..... ...++++.+.+|+.+++ +||++........ .....+.+..+ -.-+.++||||+
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l---g~d~~~~GNHEf 735 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEM---GYDASTFGNHEF 735 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCc---CCCEEEeccccc
Confidence 45999999999954322 34556666778888766 9999865432111 11222333322 344669999999
Q ss_pred CCCCcccccccccccccc------------ccCcC-------CCC---CCCceeEEEEeCcEE--EEEecCCC-C-CC-C
Q 017588 153 EKLPIIHSTKFTSYNARW------------RMPFE-------ESG---SNSNLYYSFDAAGVH--VVMLGSYT-D-FD-Q 205 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~------------~~p~~-------~~~---~~~~~~ys~~~g~~~--~i~lds~~-~-~~-~ 205 (369)
+.... .+..+.... ..|.- ..+ .....|.-++.++++ ||++-+.. . .. +
T Consensus 736 d~g~~----~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p 811 (1163)
T PRK09419 736 DWGPD----VLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSP 811 (1163)
T ss_pred ccChH----HHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCC
Confidence 54322 111111100 01110 001 011356667888854 45554321 0 00 0
Q ss_pred -------ChhHHHHHHHHhcccc-CCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-CceEEEecccccc
Q 017588 206 -------NSDQYKWLEADLNKVD-RGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVGVVFAGHVHAY 276 (369)
Q Consensus 206 -------~~~q~~Wl~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~~ 276 (369)
-....+.+++..++.+ ..+.+.+|+++|........ ... ....++.++. +||++|.||+|..
T Consensus 812 ~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~--~~~-------~~~~~lA~~v~gIDvIigGHsH~~ 882 (1163)
T PRK09419 812 GNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRT--TGE-------ITGLELAKKVKGVDAIISAHTHTL 882 (1163)
T ss_pred CCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccc--ccc-------cHHHHHHHhCCCCCEEEeCCCCcc
Confidence 1122333444333332 13577899999988543211 111 1223344443 7999999999975
Q ss_pred e
Q 017588 277 E 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 883 ~ 883 (1163)
T PRK09419 883 V 883 (1163)
T ss_pred c
Confidence 4
No 76
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.51 E-value=1.6e-07 Score=81.20 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=42.3
Q ss_pred EEEeeCCCCCC-cHHHHHHHH--------hcCCCeEEeccccCCCCCChHH-HHHHHHhhHh-hhcCCcEEEccCCCCCC
Q 017588 85 AIVGDLGQTGW-TNSTLQHVA--------KSNYDMLLLPGDLSYADLDQPL-WDSFGRMVEP-LASQRPWMVTQGNHEIE 153 (369)
Q Consensus 85 ~~~gD~~~~~~-~~~~~~~i~--------~~~~d~vl~~GD~~~~~~~~~~-~~~~~~~~~~-l~~~~P~~~v~GNHD~~ 153 (369)
+++||+|.... ..++++.+. ..+.|.++++||+++.+..... .+.+.+.... .....+++.++||||..
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 47999986533 234444332 2468999999999987664332 2222222111 11246899999999984
No 77
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.47 E-value=2e-05 Score=71.29 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=96.6
Q ss_pred CCeEEEEEeeCCCCCC----------c----HHHHHHHH----hcCCC-eEEeccccCCCCCChH----HHHHHHHhhHh
Q 017588 80 LPIKFAIVGDLGQTGW----------T----NSTLQHVA----KSNYD-MLLLPGDLSYADLDQP----LWDSFGRMVEP 136 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~----------~----~~~~~~i~----~~~~d-~vl~~GD~~~~~~~~~----~~~~~~~~~~~ 136 (369)
.+++|+..+|+|..-. . .++++.+. +.+++ ++|.+||++....... .+....+.+..
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~ 83 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRM 83 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHh
Confidence 5789999999985321 0 22333332 33555 6778999997543211 12222233332
Q ss_pred hhcCCcEEEccCCCCCCCCCccccccccccccccccCcC--------C--CC-CCCceeEEEEeC-cEE--EEEecCCCC
Q 017588 137 LASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE--------E--SG-SNSNLYYSFDAA-GVH--VVMLGSYTD 202 (369)
Q Consensus 137 l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~--------~--~~-~~~~~~ys~~~g-~~~--~i~lds~~~ 202 (369)
+ --=.+++||||++..... ...+..+.+....|.- . .. .....|..++.+ +++ +|++-+...
T Consensus 84 m---gyDa~tlGNHEFd~g~~~-l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~~~ 159 (282)
T cd07407 84 M---PYDLLTIGNHELYNYEVA-DDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFDFK 159 (282)
T ss_pred c---CCcEEeecccccCccccH-HHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEecccc
Confidence 2 223578999999532210 0001111111111110 0 00 111345566776 655 555533211
Q ss_pred -------CCCChh--HHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-Cce-EEEec
Q 017588 203 -------FDQNSD--QYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVG-VVFAG 271 (369)
Q Consensus 203 -------~~~~~~--q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~-lvl~G 271 (369)
+....+ +.+|+.+.|++ .+.+.+|+++|....... ...+....+.++. ++| ++|.|
T Consensus 160 ~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~----------~~~~~~~~la~~~~~id~~Ii~G 226 (282)
T cd07407 160 GAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA----------EFKVLHDAIRKIFPDTPIQFLGG 226 (282)
T ss_pred cCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc----------cHHHHHHHHHHhCCCCCEEEEeC
Confidence 111112 22487777763 246779999998753220 1111122333343 567 79999
Q ss_pred ccccceeeeeccCCccCCCCceEEEECCCCCC
Q 017588 272 HVHAYERFTRVSNGKPDNCGPVHITIGDGGNR 303 (369)
Q Consensus 272 H~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~~ 303 (369)
|+|...... + .+++..+.+|.-|..
T Consensus 227 HsH~~~~~~-~------~~~~~ivq~G~~g~~ 251 (282)
T cd07407 227 HSHVRDFTQ-Y------DSSSTGLESGRYLET 251 (282)
T ss_pred Cccccccee-c------cCcEEEEeccchhhc
Confidence 999753321 1 245655555554443
No 78
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.46 E-value=5.2e-07 Score=85.81 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=49.9
Q ss_pred eEEEEEeeCCCCCCc-------------HHHHHHHHhcCCCeEEeccccCCCCCChHHH-HHHHHhhHhhhc-CCcEEEc
Q 017588 82 IKFAIVGDLGQTGWT-------------NSTLQHVAKSNYDMLLLPGDLSYADLDQPLW-DSFGRMVEPLAS-QRPWMVT 146 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~-~~~~~~~~~l~~-~~P~~~v 146 (369)
+||++++|+|.+... ..+++.+.+.+||+||++||+++...+.... ..+...+..+.. .+|++++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 589999999986421 1244455678999999999999876543222 223344444433 4899999
Q ss_pred cCCCCCC
Q 017588 147 QGNHEIE 153 (369)
Q Consensus 147 ~GNHD~~ 153 (369)
+||||..
T Consensus 81 ~GNHD~~ 87 (407)
T PRK10966 81 AGNHDSV 87 (407)
T ss_pred cCCCCCh
Confidence 9999984
No 79
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.45 E-value=3.4e-07 Score=79.77 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=42.6
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHH-hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVA-KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
-|++++||+|.... .+++++.+. ..+.|.++++||+++.+..... .++.+. ...++.+.||||.
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~------~l~~l~-~~~~~~v~GNHE~ 80 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLN------VLRLLN-QPWFISVKGNHEA 80 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHH------HHHHHh-hCCcEEEECchHH
Confidence 38999999985432 234444443 3578999999999987654322 122221 2357789999998
No 80
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.44 E-value=2.2e-06 Score=77.92 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=86.0
Q ss_pred eEEEEEeeCCCCCCc-----------HHHHHHHHh-----cCCCeEEeccccCCCCCChHHHH---HHHHhhHhhhcCCc
Q 017588 82 IKFAIVGDLGQTGWT-----------NSTLQHVAK-----SNYDMLLLPGDLSYADLDQPLWD---SFGRMVEPLASQRP 142 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-----------~~~~~~i~~-----~~~d~vl~~GD~~~~~~~~~~~~---~~~~~~~~l~~~~P 142 (369)
++|+..+|+|..... ...++++++ ...-+++.+||++..... ..+. ...+.+..+ -.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~-~~~~~g~~~~~~~n~~---g~ 76 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE-SDLQDAEPDFRGMNLV---GY 76 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh-HHhcCcchHHHHHHhh---CC
Confidence 478899999864211 234444443 234589999999854332 1111 112233332 23
Q ss_pred EEEccCCCCCCCCCccccccccccccccccCcC------CCC-CCCceeEEEEeCcEEEEE--ecCCCC-C--CC----C
Q 017588 143 WMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE------ESG-SNSNLYYSFDAAGVHVVM--LGSYTD-F--DQ----N 206 (369)
Q Consensus 143 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~------~~~-~~~~~~ys~~~g~~~~i~--lds~~~-~--~~----~ 206 (369)
=..++||||++.... .+....+....|.. ..+ .....|.-++.+++++-+ +-+... . .. +
T Consensus 77 Da~~~GNHEfD~G~~----~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~ 152 (285)
T cd07405 77 DAMAVGNHEFDNPLE----VLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEG 152 (285)
T ss_pred cEEeecccccccCHH----HHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCcCCcCC
Confidence 345779999964322 11111111111110 001 112346667788865544 433110 0 00 0
Q ss_pred ---hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccce
Q 017588 207 ---SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYE 277 (369)
Q Consensus 207 ---~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~ 277 (369)
....+=+++.+++.+.++.+.+|+++|-........ .... .....+.+.+...++|++|.||.|...
T Consensus 153 ~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~--~~~~--~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 153 IEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEH--GSNA--PGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred cEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccc--cccC--chHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 111222222222222125677999999886432110 0000 011233333333589999999999855
No 81
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.31 E-value=3e-06 Score=68.85 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=74.5
Q ss_pred EEEeeCCCCCCcHHHHHHHH-----hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccc
Q 017588 85 AIVGDLGQTGWTNSTLQHVA-----KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIH 159 (369)
Q Consensus 85 ~~~gD~~~~~~~~~~~~~i~-----~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~ 159 (369)
+++||.+.. ..++++.++ +.++|++|.+||+.........|..+..-. ....+|.|++-|||+
T Consensus 1 LV~G~~~G~--l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~--~~~pipTyf~ggn~~-------- 68 (150)
T cd07380 1 LVCGDVNGR--LKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGS--KKVPIPTYFLGGNNP-------- 68 (150)
T ss_pred CeeecCCcc--HHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCC--ccCCCCEEEECCCCC--------
Confidence 367888643 344444442 457899999999986554433444333321 223589999999997
Q ss_pred cccccccccccccCcCCCCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCcccc
Q 017588 160 STKFTSYNARWRMPFEESGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNT 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~ 239 (369)
.. -|+++|.|++..
T Consensus 69 ----------------------------------------------------------------~~--DILlTh~wP~gi 82 (150)
T cd07380 69 ----------------------------------------------------------------GV--DILLTSEWPKGI 82 (150)
T ss_pred ----------------------------------------------------------------CC--CEEECCCCchhh
Confidence 12 488888887654
Q ss_pred CCCCCCC---cchHHHHHHHHHHHHhcCceEEEecccccceeeeecc
Q 017588 240 NTAHQGE---VESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVS 283 (369)
Q Consensus 240 ~~~~~~~---~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~ 283 (369)
....... .........+.+++++.++.+.||||.|.|--..|..
T Consensus 83 ~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~ 129 (150)
T cd07380 83 SKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYR 129 (150)
T ss_pred hhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeecCcc
Confidence 2111000 0001234677788899999999999999543334543
No 82
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.23 E-value=1.7e-05 Score=78.33 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=106.5
Q ss_pred CCCeEEEEEeeCCCCCC------------c----HHHHHHHHhc-CCCeEEeccccCCCCCChHH---HHHHHHhhHhhh
Q 017588 79 QLPIKFAIVGDLGQTGW------------T----NSTLQHVAKS-NYDMLLLPGDLSYADLDQPL---WDSFGRMVEPLA 138 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~------------~----~~~~~~i~~~-~~d~vl~~GD~~~~~~~~~~---~~~~~~~~~~l~ 138 (369)
..+++|+..+|+|.... . ...++++.+. +..++|.+||++........ .....+.|..+
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m- 102 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNAL- 102 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhc-
Confidence 56899999999986543 1 1234444433 45789999999986443222 11122333332
Q ss_pred cCCcEEEccCCCCCCCCCccccccccccccccccCcC------C---CCCCCceeEEEEeCcE--EEEEecCCC--CCC-
Q 017588 139 SQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE------E---SGSNSNLYYSFDAAGV--HVVMLGSYT--DFD- 204 (369)
Q Consensus 139 ~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~------~---~~~~~~~~ys~~~g~~--~~i~lds~~--~~~- 204 (369)
-.=..++||||+..... .+..+.+....|.- . .......|.-++.+++ .+|++.+.. .+.
T Consensus 103 --~yDa~tiGNHEFd~g~~----~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~ 176 (517)
T COG0737 103 --GYDAMTLGNHEFDYGLE----ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEK 176 (517)
T ss_pred --CCcEEeecccccccCHH----HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCccccccc
Confidence 34467999999964321 12222222222210 0 1112357888899984 455554311 111
Q ss_pred -------CChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccce
Q 017588 205 -------QNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYE 277 (369)
Q Consensus 205 -------~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~ 277 (369)
.-....+++++.+.+...++.+-+|+++|.+............. ..... . .++|+++.||.|..-
T Consensus 177 ~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~---~~~~~----~-~~iD~i~~GH~H~~~ 248 (517)
T COG0737 177 PNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPG---DVDVA----V-PGIDLIIGGHSHTVF 248 (517)
T ss_pred ccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccc---ccccc----c-cCcceEeccCCcccc
Confidence 11234556666555554423677999999986543221111100 00000 0 349999999999642
Q ss_pred eeeeccCCccCCCCceEEEECCCCCC
Q 017588 278 RFTRVSNGKPDNCGPVHITIGDGGNR 303 (369)
Q Consensus 278 r~~~~~~~~~~~~g~~~i~~G~gG~~ 303 (369)
-... .....+++..+.+|..|..
T Consensus 249 ~~~~---~~~~~~~t~ivqag~~gk~ 271 (517)
T COG0737 249 PGGD---KPGTVNGTPIVQAGEYGKY 271 (517)
T ss_pred cCCc---ccCccCCEEEEccChhhCc
Confidence 2210 0011245655656655544
No 83
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.17 E-value=3.1e-05 Score=71.22 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=39.0
Q ss_pred eEEEEEeeCCCCCC----c---HHHHHHHHh-----cCCCeEEeccccCCCCCChHH----------HHHHHHhhHhhhc
Q 017588 82 IKFAIVGDLGQTGW----T---NSTLQHVAK-----SNYDMLLLPGDLSYADLDQPL----------WDSFGRMVEPLAS 139 (369)
Q Consensus 82 ~~f~~~gD~~~~~~----~---~~~~~~i~~-----~~~d~vl~~GD~~~~~~~~~~----------~~~~~~~~~~l~~ 139 (369)
++|+..+|+|.... . ..+++++++ ....++|.+||++........ .....+.+..+
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~-- 78 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNAL-- 78 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhcc--
Confidence 47899999986532 1 223454432 233589999999865432111 11112222222
Q ss_pred CCcEEEccCCCCCCCC
Q 017588 140 QRPWMVTQGNHEIEKL 155 (369)
Q Consensus 140 ~~P~~~v~GNHD~~~~ 155 (369)
--=..++||||+...
T Consensus 79 -g~Da~tlGNHEFD~G 93 (313)
T cd08162 79 -GVQAIALGNHEFDLG 93 (313)
T ss_pred -CCcEEeccccccccC
Confidence 222468999999643
No 84
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.08 E-value=5.8e-05 Score=75.19 Aligned_cols=187 Identities=16% Similarity=0.196 Sum_probs=87.9
Q ss_pred CCCeEEEEEeeCCCCCC-------c----HHHHHHHHh-----cCCCeEEeccccCCCCCChHHH---HHHHHhhHhhhc
Q 017588 79 QLPIKFAIVGDLGQTGW-------T----NSTLQHVAK-----SNYDMLLLPGDLSYADLDQPLW---DSFGRMVEPLAS 139 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~-------~----~~~~~~i~~-----~~~d~vl~~GD~~~~~~~~~~~---~~~~~~~~~l~~ 139 (369)
..+++|+.++|+|.... . ...++++.+ ...-++|.+||++..... ..+ ....+.+..+
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-s~~~~g~~~i~~mN~~-- 108 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-SDLQDAEPDFRGMNLI-- 108 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-hhhcCCchhHHHHhcC--
Confidence 45799999999986532 1 123444432 234589999999864321 111 1112223322
Q ss_pred CCcEEEccCCCCCCCCCccccccccccccccccCcC-------CCC-CCCceeEEEEeCcEEE--EEecCCCC--C-CC-
Q 017588 140 QRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE-------ESG-SNSNLYYSFDAAGVHV--VMLGSYTD--F-DQ- 205 (369)
Q Consensus 140 ~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~-------~~~-~~~~~~ys~~~g~~~~--i~lds~~~--~-~~- 205 (369)
-.=..++||||++.... .+..+......|.- ..+ ..-..|.-++.+++++ |.+-+... + .+
T Consensus 109 -g~Da~tlGNHEFD~G~~----~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~ 183 (551)
T PRK09558 109 -GYDAMAVGNHEFDNPLS----VLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPE 183 (551)
T ss_pred -CCCEEcccccccCcCHH----HHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCC
Confidence 23346789999964322 11111111111110 001 1124566678888554 44432110 0 00
Q ss_pred ------ChhHHHHHHHHhccccC-CCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccce
Q 017588 206 ------NSDQYKWLEADLNKVDR-GKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYE 277 (369)
Q Consensus 206 ------~~~q~~Wl~~~L~~~~~-~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~ 277 (369)
-....+-+++.+++.+. .+.+.+|+++|............... . ..+.+-+...+||++|.||.|..-
T Consensus 184 ~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~~~~---d-~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 184 YFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHGSNAPG---D-VEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccCCCCcc---H-HHHHHhCCccCceEEEeCCCCccc
Confidence 01112223333222221 25778999999886432111000000 1 122222222379999999999754
No 85
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.08 E-value=6.4e-05 Score=74.69 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=74.3
Q ss_pred HHHHHHhcCC-CeEEeccccCCCCCChHHH--HHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcC
Q 017588 99 TLQHVAKSNY-DMLLLPGDLSYADLDQPLW--DSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFE 175 (369)
Q Consensus 99 ~~~~i~~~~~-d~vl~~GD~~~~~~~~~~~--~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~ 175 (369)
.++++.+..+ -++|.+||++......... ....+.+..+ -.=..++||||++.... .+..+.+....|.-
T Consensus 40 ~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~---g~Da~~lGNHEFd~G~~----~l~~~~~~~~fp~l 112 (550)
T TIGR01530 40 EINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAA---GFDFFTLGNHEFDAGNE----GLKEFLEPLEIPVL 112 (550)
T ss_pred HHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhcc---CCCEEEeccccccCCHH----HHHHHHHhCCCCEE
Confidence 3444444444 5888999998654321111 1112222222 34457899999964322 22222221112211
Q ss_pred C------CC----CCCceeEEEEeCc--EEEEEecCCCC-C---CCC-----hhHHHHHHHHhccccCCCCCeEEEEecc
Q 017588 176 E------SG----SNSNLYYSFDAAG--VHVVMLGSYTD-F---DQN-----SDQYKWLEADLNKVDRGKTPWIVVLIHA 234 (369)
Q Consensus 176 ~------~~----~~~~~~ys~~~g~--~~~i~lds~~~-~---~~~-----~~q~~Wl~~~L~~~~~~~~~~~iv~~H~ 234 (369)
. .. ..-..|.-++.++ +-||.+.+... . .+. ....+=+++..++.+..+.+.+|+++|.
T Consensus 113 ~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~ 192 (550)
T TIGR01530 113 SANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHA 192 (550)
T ss_pred EEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 0 00 0124566678888 56666644211 0 010 0111212222222222246779999997
Q ss_pred CccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEEecccccce
Q 017588 235 PWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVFAGHVHAYE 277 (369)
Q Consensus 235 P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~~~ 277 (369)
.... . ..+.++ .+||++|+||+|...
T Consensus 193 g~~~-------------d----~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 193 GFEK-------------N----CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred CcHH-------------H----HHHHhcCCCCCEEEeCCCCccc
Confidence 5310 0 123333 279999999999854
No 86
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.07 E-value=0.0001 Score=75.31 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-CceEEEecccccceeeeeccCCccCCCCceEEEECCCCC
Q 017588 224 KTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDGGN 302 (369)
Q Consensus 224 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~gG~ 302 (369)
+.+.+|+++|..+-.... ... .+.....+++. +||++|.||+|..-... .+++..+.+|.-|.
T Consensus 244 GaDvIIaLsH~G~~~d~~---~~~-----~ena~~~l~~v~gID~IlgGHsH~~~~~~--------ingv~vvqaG~~G~ 307 (780)
T PRK09418 244 GADVIVALAHSGVDKSGY---NVG-----MENASYYLTEVPGVDAVLMGHSHTEVKDV--------FNGVPVVMPGVFGS 307 (780)
T ss_pred CCCEEEEEeccCcccccc---ccc-----chhhhHHHhcCCCCCEEEECCCCCccccc--------CCCEEEEEcChhhc
Confidence 567799999987543211 000 01111113443 89999999999865321 24565566665555
Q ss_pred C
Q 017588 303 R 303 (369)
Q Consensus 303 ~ 303 (369)
.
T Consensus 308 ~ 308 (780)
T PRK09418 308 N 308 (780)
T ss_pred E
Confidence 4
No 87
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.07 E-value=7.7e-06 Score=68.59 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=34.4
Q ss_pred HHHHhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 101 QHVAKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 101 ~~i~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
+.+.+.+||.|+++||+++.... ...+.... .+......+|++.++||||..
T Consensus 35 ~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 35 RLIEEYGPERLIILGDLKHSFGGLSRQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHHHhcCCCEEEEeCcccccccccCHHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 34457899999999999975432 12222221 223333468999999999983
No 88
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.99 E-value=2e-05 Score=68.82 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=48.6
Q ss_pred eEEEEEeeCCCCCCc--------------HHHHHHH----HhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcE
Q 017588 82 IKFAIVGDLGQTGWT--------------NSTLQHV----AKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPW 143 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~--------------~~~~~~i----~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~ 143 (369)
-+.++++|.|.+... .++++++ ...+||.+|++||+.........+..+.+.++.+ ..++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~--~~~v 92 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVT--FRDL 92 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhc--CCcE
Confidence 457899999976431 1334433 4568999999999997655434455555556554 4699
Q ss_pred EEccCCCCC
Q 017588 144 MVTQGNHEI 152 (369)
Q Consensus 144 ~~v~GNHD~ 152 (369)
+.++||||.
T Consensus 93 ~~V~GNHD~ 101 (225)
T TIGR00024 93 ILIRGNHDA 101 (225)
T ss_pred EEECCCCCC
Confidence 999999997
No 89
>PHA02239 putative protein phosphatase
Probab=97.94 E-value=1.9e-05 Score=69.39 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=44.3
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHhc--CCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAKS--NYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~~--~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
++++++||+|.... ..++++.+... ..|.++++||+++.+.... +.+...++.+....++++++||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~--~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSK--DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChH--HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 47899999995322 24455555432 3599999999999775432 11212222222246899999999983
No 90
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.93 E-value=0.00011 Score=79.53 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc-CceEEEecccccce
Q 017588 223 GKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA-RVGVVFAGHVHAYE 277 (369)
Q Consensus 223 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lvl~GH~H~~~ 277 (369)
++.+.+|+++|...-...... + ......++.++. +||++|.||.|...
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~-~------~en~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSS-G------AEDSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCC-C------cchHHHHHHHhCCCCcEEEeCCCcccc
Confidence 357789999998754322111 1 112233455443 89999999999864
No 91
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.92 E-value=0.00027 Score=56.21 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=41.1
Q ss_pred EEEEEeeCCCCCCc--------------HHHHHHHH-hcC-CCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEc
Q 017588 83 KFAIVGDLGQTGWT--------------NSTLQHVA-KSN-YDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVT 146 (369)
Q Consensus 83 ~f~~~gD~~~~~~~--------------~~~~~~i~-~~~-~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v 146 (369)
.+.++||+|.+... ..++...+ ..+ -|.+.++||++....... .....++.|. --...|
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~---~a~~IlerLn--Grkhlv 79 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRER---AAGLILERLN--GRKHLV 79 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhh---HHHHHHHHcC--CcEEEe
Confidence 35678999876431 23444443 234 489999999997554322 2344556663 344889
Q ss_pred cCCCCC
Q 017588 147 QGNHEI 152 (369)
Q Consensus 147 ~GNHD~ 152 (369)
+||||-
T Consensus 80 ~GNhDk 85 (186)
T COG4186 80 PGNHDK 85 (186)
T ss_pred eCCCCC
Confidence 999998
No 92
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.81 E-value=3e-05 Score=69.72 Aligned_cols=66 Identities=24% Similarity=0.283 Sum_probs=44.8
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHH-hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVA-KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
++++++||+|.... ..++++.+. ..+.|.++++||+++.+..... ..+.+..+ ..+++.+.||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~---vl~~l~~l--~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLE---VLRFVKSL--GDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHH---HHHHHHhc--CCCeEEEecChhH
Confidence 46899999995533 234555553 3578999999999997754321 22333333 3568899999998
No 93
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.81 E-value=0.00052 Score=70.39 Aligned_cols=73 Identities=19% Similarity=0.076 Sum_probs=41.9
Q ss_pred CCeEEEEEeeCCCCCCc-----------------HHHHHHHHhcCC-CeEEeccccCCCCCChHHH-----------HHH
Q 017588 80 LPIKFAIVGDLGQTGWT-----------------NSTLQHVAKSNY-DMLLLPGDLSYADLDQPLW-----------DSF 130 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~~-----------------~~~~~~i~~~~~-d~vl~~GD~~~~~~~~~~~-----------~~~ 130 (369)
-.++|+..+|+|..-.. ..+++++.+..+ -++|..||++......... ...
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred eEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 36899999999864210 123455544444 4799999999764332110 011
Q ss_pred HHhhHhhhcCCcEEEccCCCCCCCC
Q 017588 131 GRMVEPLASQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 131 ~~~~~~l~~~~P~~~v~GNHD~~~~ 155 (369)
.+.|..+ --=..++||||++..
T Consensus 194 i~amN~L---GyDA~tLGNHEFDyG 215 (814)
T PRK11907 194 YAALEAL---GFDAGTLGNHEFNYG 215 (814)
T ss_pred HHHHhcc---CCCEEEechhhcccC
Confidence 2222222 233578999999643
No 94
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00057 Score=64.54 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCCeEEEEEeeCCCCCCc------HHHHHHHH-----hcCCCeEEeccccCCCCCC-------------hHHHHHHHHhh
Q 017588 79 QLPIKFAIVGDLGQTGWT------NSTLQHVA-----KSNYDMLLLPGDLSYADLD-------------QPLWDSFGRMV 134 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~------~~~~~~i~-----~~~~d~vl~~GD~~~~~~~-------------~~~~~~~~~~~ 134 (369)
...+++++++|.|.+... ...++.+. +.+..+++.+||.++.-+- .++++.+.+.+
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 467899999999976431 23333332 3445799999999984321 34566777777
Q ss_pred HhhhcCCcEEEccCCCCCC
Q 017588 135 EPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 135 ~~l~~~~P~~~v~GNHD~~ 153 (369)
..+...+-++.+|||||..
T Consensus 303 ~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred hhCCCCceEEEecCCCCcc
Confidence 7777789999999999994
No 95
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.74 E-value=6.7e-05 Score=62.60 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=41.1
Q ss_pred EEEeeCCCCCCc----------------HHHHHHHHh--cCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEc
Q 017588 85 AIVGDLGQTGWT----------------NSTLQHVAK--SNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVT 146 (369)
Q Consensus 85 ~~~gD~~~~~~~----------------~~~~~~i~~--~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v 146 (369)
.+++|+|.+... +.+++.+.+ .++|.|+++||++........ .+.++.+ ..|++.+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~----~~~l~~~--~~~~~~v 75 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE----LELLSRL--NGRKHLI 75 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH----HHHHHhC--CCCeEEE
Confidence 468888876431 223444433 368999999999986653322 2333333 3689999
Q ss_pred cCCCCCC
Q 017588 147 QGNHEIE 153 (369)
Q Consensus 147 ~GNHD~~ 153 (369)
+||||..
T Consensus 76 ~GNHD~~ 82 (168)
T cd07390 76 KGNHDSS 82 (168)
T ss_pred eCCCCch
Confidence 9999983
No 96
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.71 E-value=5e-05 Score=67.04 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=44.9
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHh----------cCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAK----------SNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNH 150 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~----------~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 150 (369)
.+++++||+|.... ..++++.+.- .+.|.++++||+++.+.... ...+.+..+.....++.+.|||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~---evl~~l~~l~~~~~~~~v~GNH 77 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSP---EVLRLVMSMVAAGAALCVPGNH 77 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHH---HHHHHHHHHhhCCcEEEEECCc
Confidence 37899999986533 2445555521 13689999999999765422 2233444443334688999999
Q ss_pred CCC
Q 017588 151 EIE 153 (369)
Q Consensus 151 D~~ 153 (369)
|..
T Consensus 78 E~~ 80 (234)
T cd07423 78 DNK 80 (234)
T ss_pred HHH
Confidence 983
No 97
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.68 E-value=0.0013 Score=58.35 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=74.3
Q ss_pred EEEEeeCCCCCCc------HHHHHHHH-----------hcCCCeEEeccccCCCCCC-------------------hHHH
Q 017588 84 FAIVGDLGQTGWT------NSTLQHVA-----------KSNYDMLLLPGDLSYADLD-------------------QPLW 127 (369)
Q Consensus 84 f~~~gD~~~~~~~------~~~~~~i~-----------~~~~d~vl~~GD~~~~~~~-------------------~~~~ 127 (369)
++++||.|.+... +.+++.+. ..+...+|++||.+..... .+..
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 6788998876543 12222332 1234579999999975321 2234
Q ss_pred HHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCC---CCCCCceeEEEEeCcEEEEEecCCCC--
Q 017588 128 DSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEE---SGSNSNLYYSFDAAGVHVVMLGSYTD-- 202 (369)
Q Consensus 128 ~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~ys~~~g~~~~i~lds~~~-- 202 (369)
+.+.+.+..+...+|+..+|||||-..... .++.+.. ..| |... .-..-..-|.|++++++|++.....-
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~l-PQqplh~--~lf--p~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~D 156 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSL-PQQPLHR--CLF--PKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDD 156 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccC-CCCCCCH--HHh--hcccccCCcEEeCCCeEEEECCEEEEEECCCCHHH
Confidence 455567777778899999999999953221 1112111 011 1100 00001233568999999999876431
Q ss_pred ---CCCChhHHHHHHHHhcc
Q 017588 203 ---FDQNSDQYKWLEADLNK 219 (369)
Q Consensus 203 ---~~~~~~q~~Wl~~~L~~ 219 (369)
+...+.-++.|+..|+.
T Consensus 157 i~ky~~~~~~l~~me~~L~w 176 (257)
T cd07387 157 ILKYSSLESRLDILERTLKW 176 (257)
T ss_pred HHHhCCCCCHHHHHHHHHHh
Confidence 23344556777777765
No 98
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.61 E-value=0.00037 Score=70.20 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHh-cCceEEEecccccce
Q 017588 224 KTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQ-ARVGVVFAGHVHAYE 277 (369)
Q Consensus 224 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvl~GH~H~~~ 277 (369)
+.+.+|+++|.......... ..+.....+++ -+||++|+||+|..-
T Consensus 195 gaDvII~LsH~G~~~d~~~~--------~~en~~~~l~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 195 GADIIVALAHSGISADPYQP--------GAENSAYYLTKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred CCCEEEEEeccCcCCCcccc--------ccchHHHHHhcCCCCCEEEcCCCCccC
Confidence 46779999998754321100 01111122344 389999999999753
No 99
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.60 E-value=0.00016 Score=64.27 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=43.6
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHh---------cCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAK---------SNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHE 151 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~---------~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD 151 (369)
+|++++||+|.... ..++++.+.- ..-|.++++||+++.+..... ..+.+..+.....++++.||||
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~---vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLR---MIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHH---HHHHHHHHhhCCCEEEEeCccH
Confidence 46899999985432 2344444321 234789999999998764322 2233333333458999999999
Q ss_pred C
Q 017588 152 I 152 (369)
Q Consensus 152 ~ 152 (369)
.
T Consensus 78 ~ 78 (245)
T PRK13625 78 N 78 (245)
T ss_pred H
Confidence 7
No 100
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.58 E-value=0.00016 Score=64.70 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=42.9
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHh------cCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcC---CcEEEccCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAK------SNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQ---RPWMVTQGNHEI 152 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~------~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~---~P~~~v~GNHD~ 152 (369)
+++++||+|.... .+++++.+.. ...+.+|++||+++.+.....- .+.+..+... ..++++.||||.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eV---ld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKV---IDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHH---HHHHHHhhhcccccceEEEecCChH
Confidence 6899999986543 3455555532 2357899999999987643322 2223333222 257899999996
No 101
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.56 E-value=0.00011 Score=64.11 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=43.3
Q ss_pred EEEEeeCCCCCC-cHHHHHHHHh--------cCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 84 FAIVGDLGQTGW-TNSTLQHVAK--------SNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 84 f~~~gD~~~~~~-~~~~~~~i~~--------~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
+.++||+|.... .+++++.+.. ...|.++++||+++.+..... ..+.+..+...-.++.+.||||..
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~---vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRE---LLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHH---HHHHHHHhhcCCCEEEEEccCcHH
Confidence 368999986533 2445555532 146899999999998765322 233334443334688999999983
No 102
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.55 E-value=0.0014 Score=66.32 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCeEEEEEeeCCCCCC-----------------cHHHHHHHHhcCC-CeEEeccccCCCCCChHHHHH-----------
Q 017588 79 QLPIKFAIVGDLGQTGW-----------------TNSTLQHVAKSNY-DMLLLPGDLSYADLDQPLWDS----------- 129 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~-----------------~~~~~~~i~~~~~-d~vl~~GD~~~~~~~~~~~~~----------- 129 (369)
...++|+..+|+|..-. ...+++++.+..+ -++|..||++....... +..
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~-~~~~~~~~~g~~~p 101 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGD-YMAAKGLKAGDVHP 101 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhh-hhhhccccCCCcch
Confidence 45899999999985421 0224445544433 57899999997544321 111
Q ss_pred HHHhhHhhhcCCcEEEccCCCCCCC
Q 017588 130 FGRMVEPLASQRPWMVTQGNHEIEK 154 (369)
Q Consensus 130 ~~~~~~~l~~~~P~~~v~GNHD~~~ 154 (369)
..+.|..+ --=..++||||+..
T Consensus 102 ~i~amN~l---gyDa~tlGNHEFd~ 123 (649)
T PRK09420 102 VYKAMNTL---DYDVGNLGNHEFNY 123 (649)
T ss_pred HHHHHHhc---CCcEEeccchhhhc
Confidence 12222222 23356899999954
No 103
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.51 E-value=0.00015 Score=63.20 Aligned_cols=74 Identities=20% Similarity=0.145 Sum_probs=46.6
Q ss_pred EECCCCCCCeEEEEEeeCCCCCC-cHHHHHHHHh-cCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCC
Q 017588 73 FKTPPAQLPIKFAIVGDLGQTGW-TNSTLQHVAK-SNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNH 150 (369)
Q Consensus 73 F~t~~~~~~~~f~~~gD~~~~~~-~~~~~~~i~~-~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 150 (369)
|+..+...--|++++||+|.... ..++++.+.. .+.|-++++||+++.+..... ..+.+. ...++.+.|||
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~---vl~~l~----~~~~~~v~GNH 80 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR---CLQLLE----EHWVRAVRGNH 80 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH---HHHHHH----cCCceEeeCch
Confidence 33333333348999999986533 3455666543 367999999999987764332 122222 23467899999
Q ss_pred CCC
Q 017588 151 EIE 153 (369)
Q Consensus 151 D~~ 153 (369)
|..
T Consensus 81 E~~ 83 (218)
T PRK11439 81 EQM 83 (218)
T ss_pred HHH
Confidence 973
No 104
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.45 E-value=0.0075 Score=52.01 Aligned_cols=186 Identities=19% Similarity=0.245 Sum_probs=100.9
Q ss_pred eEEEEEeeCCCCCCcHHHHH----HHH-hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCC
Q 017588 82 IKFAIVGDLGQTGWTNSTLQ----HVA-KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLP 156 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~~~~~~----~i~-~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~ 156 (369)
+|++++||+= +.....++. .+. +-++||+|..|-++-.+-- -.|+.+.++++. .+-+ ++.|||=|....
T Consensus 1 mriLfiGDvv-Gk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~G-it~k~y~~l~~~---G~dv-iT~GNH~wd~~e 74 (266)
T COG1692 1 MRILFIGDVV-GKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFG-ITEKIYKELLEA---GADV-ITLGNHTWDQKE 74 (266)
T ss_pred CeEEEEeccc-CcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcC-CCHHHHHHHHHh---CCCE-EecccccccchH
Confidence 5899999993 333333333 333 5689999999999865432 223333333221 3443 699999994211
Q ss_pred ccccccccccccccccCcCCC-CCCCceeEEEEeCcEEEEEecC--CCCCCC-ChhHHHHHHHHhccccCCCCCeEEEEe
Q 017588 157 IIHSTKFTSYNARWRMPFEES-GSNSNLYYSFDAAGVHVVMLGS--YTDFDQ-NSDQYKWLEADLNKVDRGKTPWIVVLI 232 (369)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~-~~~~~~~ys~~~g~~~~i~lds--~~~~~~-~~~q~~Wl~~~L~~~~~~~~~~~iv~~ 232 (369)
.. .+-.-..++--|.+-+ +..+..|.-|...+.++.+++- ...... ...-..=+++.+.+.+. +.+.+||-+
T Consensus 75 i~---~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~-~~~~iiVDF 150 (266)
T COG1692 75 IL---DFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL-GTDLIIVDF 150 (266)
T ss_pred HH---HHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCcc-CCceEEEEc
Confidence 10 1111111222333311 2345677778887766655553 222111 23334446666666654 456788888
Q ss_pred ccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEE
Q 017588 233 HAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHIT 296 (369)
Q Consensus 233 H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~ 296 (369)
|.-.-+.. .. .-++-+..|.+|+-=|+|..-.-..+. ++|+.|++
T Consensus 151 HAEtTSEK-------------~a-~g~yldGrvsavvGTHTHV~TaD~rIL-----~~GTayiT 195 (266)
T COG1692 151 HAETTSEK-------------NA-FGWYLDGRVSAVVGTHTHVPTADERIL-----PKGTAYIT 195 (266)
T ss_pred cccchhhh-------------hh-hheEEcCeEEEEEeccCccccccceec-----CCCcEEEe
Confidence 86421110 11 112334478899999999754333222 68999987
No 105
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.41 E-value=0.00077 Score=60.86 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=93.7
Q ss_pred eEEEEEeeCCCCCCc-HHHHHHHH---hcCCCeEEeccccCCCCCC--------hHHHHH---HHHhhH-hhhcCCcEEE
Q 017588 82 IKFAIVGDLGQTGWT-NSTLQHVA---KSNYDMLLLPGDLSYADLD--------QPLWDS---FGRMVE-PLASQRPWMV 145 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-~~~~~~i~---~~~~d~vl~~GD~~~~~~~--------~~~~~~---~~~~~~-~l~~~~P~~~ 145 (369)
+||++-|++|..-+. .+.+..+. ..+.|++|.+||+---... ...+.. |..... .+.+.+|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 588999999854332 23334444 3489999999999532111 122222 322222 2334589999
Q ss_pred ccCCCCCCCCCccccccccccccccccCcCCCCCCCceeE-----EEEeCcEEEEEecCC---CCCCCC-----------
Q 017588 146 TQGNHEIEKLPIIHSTKFTSYNARWRMPFEESGSNSNLYY-----SFDAAGVHVVMLGSY---TDFDQN----------- 206 (369)
Q Consensus 146 v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y-----s~~~g~~~~i~lds~---~~~~~~----------- 206 (369)
+=||||..+ |+ +.+|..+.. ..+-|| ...+|++|+-+|..- .+|..+
T Consensus 81 IGGNHEAsn-----------yL--~eLpyGGwV-ApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~st 146 (456)
T KOG2863|consen 81 IGGNHEASN-----------YL--QELPYGGWV-APNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNST 146 (456)
T ss_pred ecCchHHHH-----------HH--HhcccCcee-ccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchh
Confidence 999999831 11 123432211 124444 367899999998761 111110
Q ss_pred ------hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcch-----H----------HHHHHHHHHHHhcCc
Q 017588 207 ------SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVES-----E----------GMRKAMEGLIHQARV 265 (369)
Q Consensus 207 ------~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~-----~----------~~~~~l~~l~~~~~v 265 (369)
-.+.+ -..|.+. +.+--|+++|.-+-. -...+.... + .....+++|+++-++
T Consensus 147 iRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~G--I~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP 219 (456)
T KOG2863|consen 147 IRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRG--IYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKP 219 (456)
T ss_pred hhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcc--hhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCc
Confidence 01111 1122232 234458889964322 112221110 0 123567889999999
Q ss_pred eEEEeccccc
Q 017588 266 GVVFAGHVHA 275 (369)
Q Consensus 266 ~lvl~GH~H~ 275 (369)
..+|+.|.|.
T Consensus 220 ~yWfsAHLH~ 229 (456)
T KOG2863|consen 220 QYWFSAHLHV 229 (456)
T ss_pred chhhhhhHhh
Confidence 9999999996
No 106
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.39 E-value=0.00025 Score=63.06 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=43.3
Q ss_pred EEEeeCCCCCC-cHHHHHHHH-hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 85 AIVGDLGQTGW-TNSTLQHVA-KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 85 ~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
.++||+|.... .+++++.+. ..+.|.++++||+++.+....+ ..+.+..+ ...++.++||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~e---vl~~l~~l--~~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLE---TLRFVKSL--GDSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHH---HHHHHHhc--CCCeEEEcCCchHH
Confidence 68999986533 345556654 3467999999999997764322 23334433 24688999999983
No 107
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.32 E-value=0.00027 Score=61.93 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=42.2
Q ss_pred EEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhc-CCcEEEccCCCCCC
Q 017588 85 AIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLAS-QRPWMVTQGNHEIE 153 (369)
Q Consensus 85 ~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~-~~P~~~v~GNHD~~ 153 (369)
.++||+|.... ..++++.+....+|.+|++||+++.+.... .....+..+.. ..+++.+.||||..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~---~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSV---EVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcH---HHHHHHHHhcCCCCcEEEEccCchhh
Confidence 37899995432 134444454567899999999998765422 12222233211 34899999999984
No 108
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=97.30 E-value=0.0069 Score=52.92 Aligned_cols=178 Identities=19% Similarity=0.219 Sum_probs=86.5
Q ss_pred EEEeeCCCCCCcHHHH----HHHH-hcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCc
Q 017588 85 AIVGDLGQTGWTNSTL----QHVA-KSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPI 157 (369)
Q Consensus 85 ~~~gD~~~~~~~~~~~----~~i~-~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~ 157 (369)
+++||. .+....+++ ..+. +.++||||..|.++-.+.- ....++++ .. .+-+ .+.|||=|....
T Consensus 1 LfiGDI-vG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~----~~--GvDv-iT~GNH~wdkke- 71 (253)
T PF13277_consen 1 LFIGDI-VGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELF----KA--GVDV-ITMGNHIWDKKE- 71 (253)
T ss_dssp EEE-EB-BCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHH----HH--T-SE-EE--TTTTSSTT-
T ss_pred CeEEec-CCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHH----hc--CCCE-EecCcccccCcH-
Confidence 468887 222333333 3332 5689999999999865432 22222221 11 3554 599999995322
Q ss_pred cccccccccc---cccccCcCC-CCCCCceeEEEEeCcEEEEEecC--CCCCCCChhHHHHHHHHhccccCCCCCeEEEE
Q 017588 158 IHSTKFTSYN---ARWRMPFEE-SGSNSNLYYSFDAAGVHVVMLGS--YTDFDQNSDQYKWLEADLNKVDRGKTPWIVVL 231 (369)
Q Consensus 158 ~~~~~~~~~~---~~~~~p~~~-~~~~~~~~ys~~~g~~~~i~lds--~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~ 231 (369)
...+. .+.--|.|- .+.++..|..++.++.++.+++- .........-..-+++.|++... +.+.+||=
T Consensus 72 -----i~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~~-~~~~iiVD 145 (253)
T PF13277_consen 72 -----IFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELKE-ETDIIIVD 145 (253)
T ss_dssp -----HHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEE
T ss_pred -----HHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhccc-cCCEEEEE
Confidence 11121 122234432 23456788899999977777765 22222223444455555555422 56778888
Q ss_pred eccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEE
Q 017588 232 IHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHIT 296 (369)
Q Consensus 232 ~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~ 296 (369)
.|.-. . .-+.-.-.+-..+|.+|+-=|+|.--.-..+. |+|+.||+
T Consensus 146 FHAEa-----------T---SEK~A~g~~lDGrvsaV~GTHTHVqTaDerIL-----p~GTaYiT 191 (253)
T PF13277_consen 146 FHAEA-----------T---SEKQAMGWYLDGRVSAVVGTHTHVQTADERIL-----PGGTAYIT 191 (253)
T ss_dssp EE-S------------H---HHHHHHHHHHBTTBSEEEEESSSS-BS--EE------TTS-EEES
T ss_pred eecCc-----------H---HHHHHHHHHhCCcEEEEEeCCCCccCchhhcc-----CCCCEEEe
Confidence 88531 1 11222344566789999999999743222222 78999987
No 109
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.29 E-value=0.00037 Score=62.27 Aligned_cols=65 Identities=26% Similarity=0.290 Sum_probs=43.9
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHH-hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVA-KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
++.++||+|.... .+++++.+. ....|-++++||+++.+..... ..+.+..+. ..+..+.||||.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle---vL~~l~~l~--~~~~~VlGNHD~ 68 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE---VLRYVKSLG--DAVRLVLGNHDL 68 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH---HHHHHHhcC--CCeEEEEChhHH
Confidence 4689999986533 356667665 4467999999999998764322 123333331 235689999998
No 110
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0047 Score=48.76 Aligned_cols=86 Identities=16% Similarity=0.282 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCceEEEecccccceeeeeccCCccCCCCceEEEECCC-CCCCCccccCCCCCCCceeeEecccceEEEEE
Q 017588 254 KAMEGLIHQARVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGDG-GNREGLASRFMNPQPAISVFREASFGHGQLEV 332 (369)
Q Consensus 254 ~~l~~l~~~~~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~g-G~~~~~~~~~~~~~p~~~~~~~~~~g~~~l~v 332 (369)
+.|.-+-++.+||+.+.||+|.++... .+|-.||.-|++ |+...+ +. ......|.+|++
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSaTGAfn~~-----~t-------~~~~PSFvLmDi 156 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSATGAFNVS-----DT-------DIIVPSFVLMDI 156 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcccCCCccc-----cc-------CCCCCceEEEEe
Confidence 456666677899999999999999887 468888988875 333211 11 113567999999
Q ss_pred EeCceEEEEEEEeCCCCCeeeEEEEEEec
Q 017588 333 VNATHAQWTWHRNDDDKPIASDSIWLRSL 361 (369)
Q Consensus 333 ~~~~~~~~~~~~~~~g~~~~~d~~~~~~~ 361 (369)
...+...+-|. .-+|| +.+|...+.|.
T Consensus 157 qg~~~v~YvY~-lidge-VkVdki~ykK~ 183 (183)
T KOG3325|consen 157 QGSTVVTYVYR-LIDGE-VKVDKIEYKKP 183 (183)
T ss_pred cCCEEEEEEee-eeCCc-EEEEEEEecCC
Confidence 76655555544 34787 46788777663
No 111
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.99 E-value=0.012 Score=51.95 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 211 KWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 211 ~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
+-+++.+++.+. +.+.+|++.|-..-... ... .....+...+...++|+|+.||.|..+-..
T Consensus 162 ~~~~~~i~~lr~-~~D~vIv~~H~G~e~~~-----~p~--~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 162 ERIAADIAEAKK-KADIVIVSLHWGVEYSY-----YPT--PEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred HHHHHHHHHHhh-cCCEEEEEecCcccCCC-----CCC--HHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 445555555544 37889999996531110 111 233455555566799999999999877554
No 112
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.94 E-value=0.017 Score=51.13 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 213 LEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 213 l~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
+++.+++++. +.+++|++.|-..-... ... .....+...+.+.++|+|+.||.|..+...
T Consensus 162 i~~~i~~lr~-~~D~vIv~~H~G~e~~~-----~p~--~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 162 ILADIARARK-KADVVIVSLHWGVEYQY-----EPT--DEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHhc-cCCEEEEEecCccccCC-----CCC--HHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 4444444443 57889999997642111 001 233445555555789999999999887554
No 113
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.78 E-value=0.0011 Score=57.94 Aligned_cols=169 Identities=21% Similarity=0.280 Sum_probs=95.8
Q ss_pred CCeEEeccccCCCCCChH-------HHHHHH----HhhHhhhcCCcEEEccCCCCCCCCCcc-----ccccccccccc--
Q 017588 108 YDMLLLPGDLSYADLDQP-------LWDSFG----RMVEPLASQRPWMVTQGNHEIEKLPII-----HSTKFTSYNAR-- 169 (369)
Q Consensus 108 ~d~vl~~GD~~~~~~~~~-------~~~~~~----~~~~~l~~~~P~~~v~GNHD~~~~~~~-----~~~~~~~~~~~-- 169 (369)
|--++..||+++.++.+. +...|. ....++.-.+|+|.-.||||....... .+.....|...
T Consensus 127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~H 206 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYH 206 (392)
T ss_pred ceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhc
Confidence 445788899998765411 111111 111222234899999999999533210 01111112111
Q ss_pred ----cccCcCCCC--CCCceeEEEEeCcEEEEEecCCCCC-CC-ChhHHHHHHHHhccccCCCCCeEEEEeccCcc--cc
Q 017588 170 ----WRMPFEESG--SNSNLYYSFDAAGVHVVMLGSYTDF-DQ-NSDQYKWLEADLNKVDRGKTPWIVVLIHAPWY--NT 239 (369)
Q Consensus 170 ----~~~p~~~~~--~~~~~~ys~~~g~~~~i~lds~~~~-~~-~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~--~~ 239 (369)
|..|..... ......||+++|+++.+-+-....- .. ...-+-||+.+|.....+..+ ++++.|...- ++
T Consensus 207 r~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfst 285 (392)
T COG5555 207 RSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFST 285 (392)
T ss_pred CcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceec
Confidence 111211111 2235678999999988877654321 11 123467999999887655556 8999997542 21
Q ss_pred CCCC--------CCCc----chHHHHHHHHHHHHhcCceEEEecccccce
Q 017588 240 NTAH--------QGEV----ESEGMRKAMEGLIHQARVGVVFAGHVHAYE 277 (369)
Q Consensus 240 ~~~~--------~~~~----~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~ 277 (369)
..+. .+.+ .....+..|...++-|+|...+.||.|...
T Consensus 286 eawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~ 335 (392)
T COG5555 286 EAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFN 335 (392)
T ss_pred cccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccc
Confidence 1110 0000 012457788889999999999999999763
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.74 E-value=0.0044 Score=53.68 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=46.5
Q ss_pred CeEEEEEeeCCCCCCc--------------H---HHHH-HHHhcCCCeEEeccccCCCCCC--hHHHHHHHHhhHhhhcC
Q 017588 81 PIKFAIVGDLGQTGWT--------------N---STLQ-HVAKSNYDMLLLPGDLSYADLD--QPLWDSFGRMVEPLASQ 140 (369)
Q Consensus 81 ~~~f~~~gD~~~~~~~--------------~---~~~~-~i~~~~~d~vl~~GD~~~~~~~--~~~~~~~~~~~~~l~~~ 140 (369)
.-+.++++|.|.+... . ..++ -+...+|+-+|++||+-..-.. ...|......++.+. .
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~-~ 97 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLD-E 97 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhc-c
Confidence 4467999999976431 1 1222 2357899999999999865443 234443333333332 2
Q ss_pred CcEEEccCCCCCC
Q 017588 141 RPWMVTQGNHEIE 153 (369)
Q Consensus 141 ~P~~~v~GNHD~~ 153 (369)
.-++.+.||||-.
T Consensus 98 ~evi~i~GNHD~~ 110 (235)
T COG1407 98 REVIIIRGNHDNG 110 (235)
T ss_pred CcEEEEeccCCCc
Confidence 3599999999984
No 115
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=96.68 E-value=0.002 Score=61.30 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCeEEEEEeeCCCCCCc-------------HHHHHHHHhcCCCeEEeccccCCCCCC
Q 017588 79 QLPIKFAIVGDLGQTGWT-------------NSTLQHVAKSNYDMLLLPGDLSYADLD 123 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vl~~GD~~~~~~~ 123 (369)
...+||++..|.|.+... ++++.-+.+.+.|+||..||++..+.+
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 568999999999876431 234444457899999999999976654
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.46 E-value=0.004 Score=57.02 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=42.1
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhc--CCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLAS--QRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~--~~P~~~v~GNHD~~ 153 (369)
+++++||+|.... ..++++.......+-++++||+++.+...-+ . ...+..+.- ..-++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~E--v-i~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIE--C-VLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCChHH--H-HHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5889999985432 2334444334455889999999997764221 1 122222221 23588999999984
No 117
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.43 E-value=0.0053 Score=55.27 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=43.4
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhh--cCCcEEEccCCCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLA--SQRPWMVTQGNHEIE 153 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 153 (369)
-+++++||+|.... ..++++.+.....+-++++||+++.+....+ . ...+..+. ...-++.+.||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e--~-l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIE--V-ILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHH--H-HHHHHHHHhcCCCCEEEEeccccHH
Confidence 35889999985432 2334444444567889999999987764322 1 11122221 124688999999994
No 118
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.11 E-value=0.008 Score=54.43 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=41.7
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhh--cCCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLA--SQRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 153 (369)
.+.++||+|.... ..++++.......+-+|++||+++.+...-+ ....+..+. ....++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~e---vl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVE---TFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHH---HHHHHHHHhhcCCCcEEEEecccchH
Confidence 4788999985432 2334444333455789999999997764322 112222222 124689999999984
No 119
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.04 E-value=0.082 Score=47.07 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 209 QYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 209 q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
+.+.+++.+++++. +.+++||+.|-..-.. ... ......+...+.+.++|+|+.+|.|..|-..
T Consensus 169 ~~~~i~~~i~~~r~-~~D~vIv~~HwG~e~~-----~~p--~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREARK-KADVVIVSLHWGIEYE-----NYP--TPEQRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHhc-CCCEEEEEeccCCCCC-----CCC--CHHHHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 34778888888763 7889999999642111 011 1344556556666899999999999987665
No 120
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.02 E-value=0.012 Score=54.03 Aligned_cols=68 Identities=15% Similarity=0.034 Sum_probs=40.0
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHhc-CCCeEEeccccCCCCCChHHHHHHHHhhHhhh--cCCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAKS-NYDMLLLPGDLSYADLDQPLWDSFGRMVEPLA--SQRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~~-~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 153 (369)
++.++||+|.... ..++++..... ..+-+|++||+++.+...-+ . ...+-.+. ...-++.+.||||..
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~E--v-l~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIE--I-LIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCcHH--H-HHHHHHHhhcCCCcEEEecCchhhh
Confidence 6799999985432 12333322222 23679999999998764322 1 11222221 124588899999995
No 121
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.86 E-value=0.012 Score=53.63 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred EEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcC--CcEEEccCCCCCC
Q 017588 84 FAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQ--RPWMVTQGNHEIE 153 (369)
Q Consensus 84 f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~--~P~~~v~GNHD~~ 153 (369)
+.++||+|.... ..++++.+.....+-++++||+++.+....+ . ...+..+... .-++.+.||||..
T Consensus 45 i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e--v-l~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 45 VNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVE--T-MEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHH--H-HHHHHHhhhcCCCcEEEEecccchH
Confidence 788999985432 2334443333455779999999998764221 1 1112222112 3488999999984
No 122
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.86 E-value=0.012 Score=53.47 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=41.7
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhh--cCCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLA--SQRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 153 (369)
.++++||+|.... ..++++.......+-+|++||+++.+...-+ .+ ..+..+. ....++.+.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e--~i-~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE--TI-CLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHH--HH-HHHHHhhhhCCCcEEEEecccchh
Confidence 4889999985432 2334444444456789999999997754322 11 1112221 123488999999994
No 123
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.77 E-value=0.017 Score=54.06 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=40.4
Q ss_pred eEEEEEeeCCCCCCc-HHHHHHHHhcCC-CeEEeccccCCCCCChHHHHHHHHhhHhhh--cCCcEEEccCCCCCC
Q 017588 82 IKFAIVGDLGQTGWT-NSTLQHVAKSNY-DMLLLPGDLSYADLDQPLWDSFGRMVEPLA--SQRPWMVTQGNHEIE 153 (369)
Q Consensus 82 ~~f~~~gD~~~~~~~-~~~~~~i~~~~~-d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 153 (369)
-++.++||+|..... ..+++.+.-... +.+|++||+++.+...-+ . ...+..+. ...-++.+.||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlE--v-l~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLE--T-FLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHH--H-HHHHHHHhhccCCeEEEEeeecccc
Confidence 468999999855322 233333222223 459999999987764221 1 12222221 124588999999985
No 124
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.76 E-value=0.01 Score=53.94 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=40.9
Q ss_pred EEEEeeCCCCCC-cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhH--hhhcCCcEEEccCCCCCC
Q 017588 84 FAIVGDLGQTGW-TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVE--PLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 84 f~~~gD~~~~~~-~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~--~l~~~~P~~~v~GNHD~~ 153 (369)
+.++||+|.... ..++++.+.....+-++++||+++.+....+ .+ ..+- ++.....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e--vl-~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVE--TI-TLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHH--HH-HHHHHHhhccCCeEEEEecccchH
Confidence 688999985432 2334554444445578899999998764221 11 1111 122234689999999974
No 125
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.71 E-value=0.012 Score=54.08 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=41.2
Q ss_pred EEEEEeeCCCCC-CcHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhc--CCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTG-WTNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLAS--QRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~--~~P~~~v~GNHD~~ 153 (369)
.++++||+|... ...++++.......+-+|++||+++.+...- +.+ ..+..+.- ...++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~--evl-~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSL--ETI-CLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCcH--HHH-HHHHHhcccCCCceEEEecccchh
Confidence 488899998542 2233444433345567889999999775422 111 12222211 23588999999984
No 126
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.12 Score=50.49 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhc--CceE-EEecccccce
Q 017588 207 SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQA--RVGV-VFAGHVHAYE 277 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~l-vl~GH~H~~~ 277 (369)
-.|.+|-.+.++.. +.+-+|+++|.|.-.. ..++.+...++++ ++++ ||-||.|...
T Consensus 211 i~~~~~~~~m~~~~---~idlii~lgH~~~~~~-----------~e~~~~~~~ir~~~p~t~IqviGGHshird 270 (602)
T KOG4419|consen 211 ITQSEWEQDMVNTT---DIDLIIALGHSPVRDD-----------DEWKSLHAEIRKVHPNTPIQVIGGHSHIRD 270 (602)
T ss_pred HhccchHHHHhhcc---CccEEEEecccccccc-----------hhhhhHHHHHhhhCCCCceEEECchhhhhh
Confidence 35678887777763 4566899999985321 1222344445554 6777 9999999753
No 127
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.16 E-value=0.057 Score=49.65 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=39.8
Q ss_pred eEEEEEeeCCCCCC-cHHHHHHHHhc-CCCeEEeccccCCCCCChHHHHHHHHhhHhh--hcCCcEEEccCCCCCC
Q 017588 82 IKFAIVGDLGQTGW-TNSTLQHVAKS-NYDMLLLPGDLSYADLDQPLWDSFGRMVEPL--ASQRPWMVTQGNHEIE 153 (369)
Q Consensus 82 ~~f~~~gD~~~~~~-~~~~~~~i~~~-~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l--~~~~P~~~v~GNHD~~ 153 (369)
-++.++||+|.... ..++++...-. .-+-++++||+++.+...-+ .+ ..+-.+ ....-++.+.||||..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~E--vl-~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVE--VI-LTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHH--HH-HHHHHhhhccCCceEEEeeccchH
Confidence 46899999984422 22333332211 23579999999998764221 11 111122 1124578899999983
No 128
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=94.67 E-value=0.059 Score=49.59 Aligned_cols=68 Identities=16% Similarity=0.045 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCC-cHHHHHHHHhcC----C----CeEEeccccCCCCCChHHHHHHHHhhHhhh--cCCcEEEccCCCC
Q 017588 83 KFAIVGDLGQTGW-TNSTLQHVAKSN----Y----DMLLLPGDLSYADLDQPLWDSFGRMVEPLA--SQRPWMVTQGNHE 151 (369)
Q Consensus 83 ~f~~~gD~~~~~~-~~~~~~~i~~~~----~----d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD 151 (369)
.+.++||+|.... ..++++.+.... . .-+|++||+++.+...-+ ....+..+. ...-++.+.||||
T Consensus 49 ~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~e---vl~ll~~lk~~~p~~v~lLRGNHE 125 (311)
T cd07419 49 PIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLE---TICLLLALKVKYPNQIHLIRGNHE 125 (311)
T ss_pred CEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHH---HHHHHHHhhhcCCCcEEEeccccc
Confidence 3688999985432 233444332111 1 237899999987764221 112222221 1246889999999
Q ss_pred CC
Q 017588 152 IE 153 (369)
Q Consensus 152 ~~ 153 (369)
..
T Consensus 126 ~~ 127 (311)
T cd07419 126 DR 127 (311)
T ss_pred hH
Confidence 84
No 129
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=94.07 E-value=0.053 Score=46.80 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=39.9
Q ss_pred EEEEeeCCCCCCc--HHHHH----HHH-hcCCCeEEeccccCCCCCChH---------HH-H----HHHHhhHhhhcCCc
Q 017588 84 FAIVGDLGQTGWT--NSTLQ----HVA-KSNYDMLLLPGDLSYADLDQP---------LW-D----SFGRMVEPLASQRP 142 (369)
Q Consensus 84 f~~~gD~~~~~~~--~~~~~----~i~-~~~~d~vl~~GD~~~~~~~~~---------~~-~----~~~~~~~~l~~~~P 142 (369)
|++++|.+.+... -..++ .+. ..+|+.+|++|++++...... .. . .+...+..+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5788999877432 22222 233 667999999999998643211 01 1 11223344445689
Q ss_pred EEEccCCCCCCCC
Q 017588 143 WMVTQGNHEIEKL 155 (369)
Q Consensus 143 ~~~v~GNHD~~~~ 155 (369)
++.+||+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999999644
No 130
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=93.33 E-value=0.17 Score=36.01 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=34.2
Q ss_pred CEEEEEeCC---C--CCCEEEEeccCCCCCceEeeeeEEEeeeecccceEEEEEeCCCCCCCEEEEEeCC
Q 017588 1 MRLSWITEN---S--SPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 1 m~v~W~t~~---~--~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
+.|.|.... . ..-.|+|....+.. . ..... ...-...+.|++|.|+|.|.++|..
T Consensus 16 v~v~W~~~~~~~~~~~~y~v~~~~~~~~~---~---~~~~~----~~~~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 16 VTVSWKPPSSGNGPITGYRVEYRSVNSTS---D---WQEVT----VPGNETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp EEEEEEESSSTSSSESEEEEEEEETTSSS---E---EEEEE----EETTSSEEEEESCCTTSEEEEEEEE
T ss_pred EEEEEECCCCCCCCeeEEEEEEEecccce---e---eeeee----eeeeeeeeeeccCCCCCEEEEEEEE
Confidence 478899884 1 55566776654322 0 01111 1112236888999999999999985
No 131
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=91.03 E-value=0.53 Score=41.57 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCCeEEEEEeeCCCCCCcHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 79 QLPIKFAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
..-.||+.++|+|....... .-+.-|+++++||+..-+..++ -..|.+.+-.+.- .--+++.||||..
T Consensus 59 ~~~~r~VcisdtH~~~~~i~-----~~p~gDvlihagdfT~~g~~~e-v~~fn~~~gslph-~yKIVIaGNHELt 126 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFDIN-----DIPDGDVLIHAGDFTNLGLPEE-VIKFNEWLGSLPH-EYKIVIAGNHELT 126 (305)
T ss_pred CCceEEEEecCcccccCccc-----cCCCCceEEeccCCccccCHHH-HHhhhHHhccCcc-eeeEEEeecccee
Confidence 56789999999996543221 1356799999999997554322 2334444443322 2346799999995
No 132
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=87.71 E-value=1.5 Score=44.66 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCCCEEEEEeCCC-------CCCeeEEECCCC
Q 017588 45 IHDVVVGPLKPNTVYYYRCGPD-------SAQERSFKTPPA 78 (369)
Q Consensus 45 ~~~~~l~~L~p~t~Y~Y~v~~~-------~s~~~~F~t~~~ 78 (369)
...|+|+||+|+|.|-++|... .|....|.|.+.
T Consensus 497 ~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 497 TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 4468899999999999999863 477888988774
No 133
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=86.08 E-value=6.2 Score=35.61 Aligned_cols=85 Identities=8% Similarity=0.021 Sum_probs=51.4
Q ss_pred CeeEEECCCCCCCeEEEEEeeCCCCCCc-----HHHHHHHHh-----cCCCeEEeccccCCCC-----CCh----HHHHH
Q 017588 69 QERSFKTPPAQLPIKFAIVGDLGQTGWT-----NSTLQHVAK-----SNYDMLLLPGDLSYAD-----LDQ----PLWDS 129 (369)
Q Consensus 69 ~~~~F~t~~~~~~~~f~~~gD~~~~~~~-----~~~~~~i~~-----~~~d~vl~~GD~~~~~-----~~~----~~~~~ 129 (369)
..|.......+...+|+++||.+.+... .++++...+ ..|-.+|+.|+++... ... +.++.
T Consensus 15 ~~~~~~~~~~~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~ 94 (291)
T PTZ00235 15 EEYEIIVRKNDKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEK 94 (291)
T ss_pred ceEEEEEecCCCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHH
Confidence 3444444444678999999999977542 223333321 2388999999998642 111 22333
Q ss_pred HHH-hh---HhhhcCCcEEEccCCCCCC
Q 017588 130 FGR-MV---EPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 130 ~~~-~~---~~l~~~~P~~~v~GNHD~~ 153 (369)
+.. .+ ..+..+.-+++|||-.|-+
T Consensus 95 La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 95 LSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 332 12 2344568899999999974
No 134
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=82.44 E-value=2.4 Score=36.98 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=38.2
Q ss_pred EEEEeeCCCCCCcHHHHHHHH---hcCCCeEEeccccCCCCCChHHHHHHHHhh-HhhhcCCcEEEccCCCCCC
Q 017588 84 FAIVGDLGQTGWTNSTLQHVA---KSNYDMLLLPGDLSYADLDQPLWDSFGRMV-EPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 84 f~~~gD~~~~~~~~~~~~~i~---~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~-~~l~~~~P~~~v~GNHD~~ 153 (369)
+.+.||+|... ..+++.+. ...-.=-|++||+++.+-.. -+.|.-++ -++.-.-.+..+.||||..
T Consensus 45 vtvcGDIHGQf--~Dllelf~igG~~~~t~YLFLGDyVDRG~~S--vEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQF--YDLLELFRIGGDVPETNYLFLGDYVDRGYYS--VETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchH--HHHHHHHHhCCCCCCCceEeecchhccccch--HHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 36799998543 34444443 12223478999999877542 23332211 1222235578899999995
No 135
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=81.40 E-value=1.3 Score=40.96 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=40.5
Q ss_pred EEEEEeeCCCCCCcHHHHHHHHhcC---C-CeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCC
Q 017588 83 KFAIVGDLGQTGWTNSTLQHVAKSN---Y-DMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKL 155 (369)
Q Consensus 83 ~f~~~gD~~~~~~~~~~~~~i~~~~---~-d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 155 (369)
-+.++||+|.... .+++-+.... | .-.+++||+++.+...-+--.+.-.++ +.-.--++...||||....
T Consensus 60 PV~i~GDiHGq~~--DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~K-i~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 60 PVKIVGDIHGQFG--DLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALK-IKYPENVFLLRGNHECASI 133 (331)
T ss_pred CEEEEccCcCCHH--HHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhh-hhCCceEEEeccccccccc
Confidence 5677999985533 3344333222 4 458999999998764211000111111 1123678999999999643
No 136
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.80 E-value=4.2 Score=38.74 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=45.4
Q ss_pred CCeEEEEEeeCCCCCCcHHHHHHHH-----hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCC
Q 017588 80 LPIKFAIVGDLGQTGWTNSTLQHVA-----KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNH 150 (369)
Q Consensus 80 ~~~~f~~~gD~~~~~~~~~~~~~i~-----~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 150 (369)
.+.+|+++||.- +....+++.|. +...|++|.+|++...+.....|..+.+-...+ .+|+|+.-+|-
T Consensus 4 ~~~kILv~Gd~~--Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~v--PiptY~~g~~~ 75 (528)
T KOG2476|consen 4 ADAKILVCGDVE--GRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKV--PIPTYFLGDNA 75 (528)
T ss_pred CCceEEEEcCcc--ccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccC--ceeEEEecCCC
Confidence 347999999984 33455565553 345899999999997655455666555444444 48888877765
No 137
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=78.01 E-value=3.2 Score=36.44 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=39.1
Q ss_pred EEEEEeeCCCCCCcHHHHHHHH--hcCCCe-EEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGWTNSTLQHVA--KSNYDM-LLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~~~~~~~~i~--~~~~d~-vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
-+.+.||.|... ...++.++ -..||. .+++||.++.+....+--.+.-.+ ++.-.-.+-.++||||..
T Consensus 61 pvtvcGDvHGqf--~dl~ELfkiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~-Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 61 PVTVCGDVHGQF--HDLIELFKIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVAL-KVRYPDRVTILRGNHESR 131 (319)
T ss_pred ceEEecCcchhH--HHHHHHHHccCCCCCcceeeeeeecccccchHHHHHHHHHh-hccccceeEEecCchHHH
Confidence 356799998443 34455443 445664 788999998776433221111111 111124566799999983
No 138
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=77.44 E-value=3.3 Score=34.25 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.4
Q ss_pred cCceEEEecccccceeee
Q 017588 263 ARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 263 ~~v~lvl~GH~H~~~r~~ 280 (369)
.+.+++++||+|..+...
T Consensus 124 ~~~d~vi~GHtH~~~~~~ 141 (168)
T cd07390 124 DRGSWNLHGHIHSNSPDI 141 (168)
T ss_pred CCCeEEEEeeeCCCCCCC
Confidence 456899999999877654
No 139
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=75.98 E-value=5 Score=34.36 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred EEEEeeCCCCCCcHHHHHHHH--hcCCCe-EEeccccCCCCCChHHHHHHHHhhHhhhcC--CcEEEccCCCCCC
Q 017588 84 FAIVGDLGQTGWTNSTLQHVA--KSNYDM-LLLPGDLSYADLDQPLWDSFGRMVEPLASQ--RPWMVTQGNHEIE 153 (369)
Q Consensus 84 f~~~gD~~~~~~~~~~~~~i~--~~~~d~-vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~--~P~~~v~GNHD~~ 153 (369)
+.+.||+|.. ...+++... -.-||- -|++||+++.+-.. .+.|. .+--|..+ ..+-.+.||||..
T Consensus 48 VTvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyyS--LEtfT-~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 48 VTVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYS--LETFT-LLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eeEeeccchh--HHHHHHHHHhcCCCCCcceEEecccccccccc--HHHHH-HHHHHhhcCCceeEEeeccchhh
Confidence 4568999844 234445443 223443 67899999877542 22222 22222222 4466789999984
No 140
>PHA03008 hypothetical protein; Provisional
Probab=67.86 E-value=11 Score=31.66 Aligned_cols=42 Identities=2% Similarity=0.063 Sum_probs=29.0
Q ss_pred EEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccce
Q 017588 229 VVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYE 277 (369)
Q Consensus 229 iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~ 277 (369)
|+++|.||+.-...+.+ .+.|.+-+.+-++.+.++||.-.|.
T Consensus 164 ILITHgPP~GhLD~~vG-------C~~Ll~~I~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 164 ILITASPPFAILDDDLA-------CGDLFSKVIKIKPKFHIFNGLTQFS 205 (234)
T ss_pred EEEeCCCCccccccccC-------cHHHHHHHHHhCCcEEEeCCccccC
Confidence 99999999876543222 2445555557789999999965543
No 141
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=66.00 E-value=10 Score=35.07 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=37.8
Q ss_pred EEEEEeeCCCCCCcHHHHHHHH---hcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCC
Q 017588 83 KFAIVGDLGQTGWTNSTLQHVA---KSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIE 153 (369)
Q Consensus 83 ~f~~~gD~~~~~~~~~~~~~i~---~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 153 (369)
-+.+.||+|... -.+++... .+.----+++||.++.+--.-+--.+.-.++ +.-...++...||||..
T Consensus 89 PiTVCGDIHGQf--~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLK-i~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 89 PITVCGDIHGQF--FDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLK-INYPKTLFLLRGNHECR 159 (517)
T ss_pred CeeEecccchHH--HHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHh-cCCCCeEEEecCCcchh
Confidence 456799998432 23444443 2222347899999987643211111111222 22235678899999984
No 142
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=65.44 E-value=6.8 Score=26.34 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCCCEEEEEeCC
Q 017588 45 IHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 45 ~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
.+.+.|.+|+|++.|.++|..
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEE
Confidence 577899999999999999865
No 143
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=59.84 E-value=29 Score=30.69 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCCeEEEEEeeCCCCCCcHHHHHHHHhcCCCeEEeccccCCCCCCh---HHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 79 QLPIKFAIVGDLGQTGWTNSTLQHVAKSNYDMLLLPGDLSYADLDQ---PLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vl~~GD~~~~~~~~---~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
.+..+|++.+|.+ +......++.+...+|+.+|+.|=.+|-.+.. ...+.-.+.++.+....+--.|..-|=.
T Consensus 174 dg~~~i~faSDvq-Gp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHll 249 (304)
T COG2248 174 DGKSSIVFASDVQ-GPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLL 249 (304)
T ss_pred cCCeEEEEccccc-CCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhh
Confidence 5678999999996 44456788888889999999999998654431 1122223445555555555566666655
No 144
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=56.89 E-value=19 Score=38.40 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=36.0
Q ss_pred CEEEEEeCC---C--CCCEEEEeccCCCCCceEeeeeEEEeeeecccceEEEEEeCCCCCCCEEEEEeCC
Q 017588 1 MRLSWITEN---S--SPATVKYGTSPGVYDNSANGTTSSYHYVLYKSGEIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 1 m~v~W~t~~---~--~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
|.|.|.... . ..-.|+|+...+... ..... ...+-.-.+.|+||+|+|.|++.|..
T Consensus 836 ~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~-----~~~~~----~i~~~~~~~~ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 836 VNLSWKPPLWDNGKLTGYEVKYWKINEKEG-----SLSRV----QIAGNRTSWRLTGLEPNTKYRFYVRA 896 (1051)
T ss_pred EEEEecCcCccCCccceeEEEEEEcCCCcc-----cccce----eecCCcceEeeeCCCCCceEEEEEEE
Confidence 568884443 1 677888988765431 11111 11244556789999999999999875
No 145
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=56.68 E-value=9.4 Score=38.10 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=30.5
Q ss_pred HHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 103 VAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 103 i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
|+..-.|-+=++||+.+.+..... .+..|...--+=.-+||||+
T Consensus 180 IqrL~VDhLHIvGDIyDRGp~pd~------ImD~Lm~~hsvDIQWGNHDI 223 (640)
T PF06874_consen 180 IQRLAVDHLHIVGDIYDRGPRPDK------IMDRLMNYHSVDIQWGNHDI 223 (640)
T ss_pred HHHHhhhheeecccccCCCCChhH------HHHHHhcCCCccccccchHH
Confidence 346678999999999998875432 23344433444568999998
No 146
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=56.48 E-value=12 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCCCEEEEEeCC
Q 017588 44 EIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 44 ~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
-...+.+.+|.|++.|.++|..
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred cccEEEEccccCCCEEEEEEEE
Confidence 4567889999999999999865
No 147
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=50.73 E-value=53 Score=35.65 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCCCCEEEEEeCCC-------CCCeeEEECCC
Q 017588 44 EIHDVVVGPLKPNTVYYYRCGPD-------SAQERSFKTPP 77 (369)
Q Consensus 44 ~~~~~~l~~L~p~t~Y~Y~v~~~-------~s~~~~F~t~~ 77 (369)
-.++.+|.||+|.|.|.|||... .|..-+|+|..
T Consensus 572 n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 572 NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 44567888999999999999863 46667777754
No 148
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=47.25 E-value=21 Score=38.48 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=23.4
Q ss_pred EeCCCCCCCEEEEEeCCC-------CCCeeEEECCCC
Q 017588 49 VVGPLKPNTVYYYRCGPD-------SAQERSFKTPPA 78 (369)
Q Consensus 49 ~l~~L~p~t~Y~Y~v~~~-------~s~~~~F~t~~~ 78 (369)
.+++|+|+|.|.+||..- .|.+..+.|+..
T Consensus 677 l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~ 713 (1381)
T KOG4221|consen 677 LFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPES 713 (1381)
T ss_pred HhhcCCCCceEEEEEEEeccCCCCCcccceeccCccc
Confidence 466899999999999753 467788888654
No 149
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.85 E-value=17 Score=32.43 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCce-EEEeccccc
Q 017588 251 GMRKAMEGLIHQARVG-VVFAGHVHA 275 (369)
Q Consensus 251 ~~~~~l~~l~~~~~v~-lvl~GH~H~ 275 (369)
++.+.+.++++++++| +||.||+=.
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeCchhh
Confidence 3567899999999999 689999954
No 150
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=44.81 E-value=22 Score=31.92 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCce-EEEecccccc
Q 017588 251 GMRKAMEGLIHQARVG-VVFAGHVHAY 276 (369)
Q Consensus 251 ~~~~~l~~l~~~~~v~-lvl~GH~H~~ 276 (369)
++.+.+.+|++++++| +||+||+=..
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 4668899999999999 6899999743
No 151
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=44.24 E-value=78 Score=29.91 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHhccccCCCCCeEEEEeccC-ccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccceeee
Q 017588 210 YKWLEADLNKVDRGKTPWIVVLIHAP-WYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYERFT 280 (369)
Q Consensus 210 ~~Wl~~~L~~~~~~~~~~~iv~~H~P-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~r~~ 280 (369)
..=++.++..+++ +.+-+|++.|+. -|.... . ..+..+..-+...++++++.+|-|..|-..
T Consensus 210 ~~~~~~~v~~a~k-~adlviv~~HwG~ey~~~p------~--~~q~~~a~~lidAGa~iIvGhhpHvlqpiE 272 (372)
T COG2843 210 LERVLAAVLAAKK-GADLVIVQPHWGVEYAYEP------A--AGQRALARRLIDAGADIIVGHHPHVLQPIE 272 (372)
T ss_pred hhhhHHHHHhhhc-cCCEEEEeccccccccCCC------c--HHHHHHHHHHHhcCcCeEecCCCCcCcceE
Confidence 3344555555554 567789999973 232211 1 234556555666899999999999988766
No 152
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=43.87 E-value=24 Score=31.08 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=21.9
Q ss_pred EEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEeccccc
Q 017588 228 IVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHA 275 (369)
Q Consensus 228 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~ 275 (369)
-++++|||++-.....-.... ...+.+.. +.++++ .+++-|+..
T Consensus 55 dlIItHHP~~f~~~~~~~~~~--~~~~~~~~-li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 55 DLIITHHPLFFKPLKSLTGDD--YKGKIIEK-LIKNGI-SVYSAHTNL 98 (241)
T ss_dssp SEEEESS-SSSSTSSHCHCHS--HHHHHHHH-HHHTT--EEEEESHHH
T ss_pred CEEEEcCchhhcCCccccccc--hhhHHHHH-HHHCCC-EEEEecccc
Confidence 389999997543221111111 22334444 444777 577888864
No 153
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=43.15 E-value=20 Score=26.65 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=14.9
Q ss_pred EEEeCCCCCCCEEEEEeCC
Q 017588 47 DVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 47 ~~~l~~L~p~t~Y~Y~v~~ 65 (369)
.+.|.+|.|++.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 4679999999999999986
No 154
>PRK10799 metal-binding protein; Provisional
Probab=41.68 E-value=48 Score=29.34 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=24.5
Q ss_pred EEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecccccce
Q 017588 229 VVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHAYE 277 (369)
Q Consensus 229 iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~~~ 277 (369)
++++|||++-....... . .........+.++++ .+++-|++.-.
T Consensus 59 lIitHHP~~~~~~~~~~-~---~~~~~~~~~li~~~i-~vy~~Htn~D~ 102 (247)
T PRK10799 59 AVIVHHGYFWKGESPVI-R---GMKRNRLKTLLANDI-NLYGWHLPLDA 102 (247)
T ss_pred EEEECCchhccCCCccc-c---chHHHHHHHHHHCCC-eEEEEecchhh
Confidence 78899997533221111 1 122334445556676 57888888643
No 155
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=40.48 E-value=53 Score=29.10 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=23.7
Q ss_pred EEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEeccccc
Q 017588 228 IVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHVHA 275 (369)
Q Consensus 228 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~H~ 275 (369)
-++++|||++-......... ..... ...+.++++ .+++-|+..
T Consensus 59 dlIitHHP~~f~~~~~~~~~---~~~~~-~~~li~~~I-~vy~~Ht~l 101 (249)
T TIGR00486 59 DLIITHHPLIWKPLKRLIRG---IKPGR-LKILLQNDI-SLYSAHTNL 101 (249)
T ss_pred CEEEEcCccccCCcccccCC---CHHHH-HHHHHHCCC-eEEEeecch
Confidence 38899999853321111111 12333 444666777 577878764
No 156
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=40.12 E-value=28 Score=33.44 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=28.9
Q ss_pred HhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 104 AKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 104 ~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
++...|.+=++||+.+.+..... .+..|...-.+=.-+||||.
T Consensus 187 qrLvVDhLHiVGDIyDRGP~pd~------Imd~L~~yhsvDiQWGNHDi 229 (648)
T COG3855 187 QRLVVDHLHIVGDIYDRGPYPDK------IMDTLINYHSVDIQWGNHDI 229 (648)
T ss_pred HHHhhhheeeecccccCCCCchH------HHHHHhhcccccccccCcce
Confidence 46678999999999988775432 23333322334457899998
No 157
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=39.31 E-value=90 Score=29.99 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCCeEEEEEeeCCCCCCc-----HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhh----------hcCCcE
Q 017588 79 QLPIKFAIVGDLGQTGWT-----NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPL----------ASQRPW 143 (369)
Q Consensus 79 ~~~~~f~~~gD~~~~~~~-----~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l----------~~~~P~ 143 (369)
.....|++++|.+.+... .++++......|-.||+.|-+.........-+.+.+.++.| -.+..+
T Consensus 280 ~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~f 359 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQF 359 (525)
T ss_pred CcCceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceE
Confidence 467889999999876431 12222234567889999999986433222222222222221 124789
Q ss_pred EEccCCCCCCC
Q 017588 144 MVTQGNHEIEK 154 (369)
Q Consensus 144 ~~v~GNHD~~~ 154 (369)
++|||=.|-+.
T Consensus 360 IFVPGP~Dp~~ 370 (525)
T KOG3818|consen 360 IFVPGPNDPWV 370 (525)
T ss_pred EEecCCCCCCc
Confidence 99999988853
No 158
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=38.44 E-value=44 Score=25.65 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCCCEEEEEeCC
Q 017588 43 GEIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 43 ~~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
+-++++.+.++.+|+.|-|+|..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 46788999999999999999985
No 159
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=38.30 E-value=46 Score=24.81 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCC
Q 017588 42 SGEIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 42 ~~~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
.+-++++.+.++.+|+.|.|+|..
T Consensus 43 ~~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 43 YGGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred cCCEEEEEECCCCCCCEEEEEECC
Confidence 456778999999999999999976
No 160
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=36.05 E-value=62 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.9
Q ss_pred ccceEEEEEeCCCCCCCEEEEEeCCCCCCeeEEE
Q 017588 41 KSGEIHDVVVGPLKPNTVYYYRCGPDSAQERSFK 74 (369)
Q Consensus 41 ~~~~~~~~~l~~L~p~t~Y~Y~v~~~~s~~~~F~ 74 (369)
..+....++|.+|++|.+|+-|++-.....++|+
T Consensus 61 ~~~~t~~V~L~nl~~~e~y~vKiCW~At~P~sf~ 94 (180)
T PF10333_consen 61 QPGSTTYVELNNLQPGETYQVKICWPATDPISFD 94 (180)
T ss_pred CCCceEEEEeccCCCCCeEEEEEEEeccCceEEe
Confidence 3457788999999999999999996534444444
No 161
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=35.14 E-value=52 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.2
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCC
Q 017588 42 SGEIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 42 ~~~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
..=++++.+.++ +|..|.|++..
T Consensus 38 ~~G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 38 GDGWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred CCcEEEEEeCCC-CCCeEEEEECC
Confidence 345667899999 99999999984
No 162
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=34.43 E-value=34 Score=29.59 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=19.2
Q ss_pred CceEEEecccccceeeeeccCCccCCCCceEEEECC
Q 017588 264 RVGVVFAGHVHAYERFTRVSNGKPDNCGPVHITIGD 299 (369)
Q Consensus 264 ~v~lvl~GH~H~~~r~~~~~~~~~~~~g~~~i~~G~ 299 (369)
+.+++++||+|.-.... .+..+.|-+|+
T Consensus 179 ~~~~vv~GHT~~~~~~~--------~~~~i~IDtGa 206 (218)
T PRK11439 179 GADHFWFGHTPLRHRVD--------IGNLHYIDTGA 206 (218)
T ss_pred CCCEEEECCccCCCccc--------cCCEEEEECCC
Confidence 55789999999854322 23567777775
No 163
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=34.28 E-value=53 Score=24.23 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=21.3
Q ss_pred ccceEEEEEeCCCCCCCEEEEEeCC
Q 017588 41 KSGEIHDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 41 ~~~~~~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
..+-++++.+.++.+|..|.|++..
T Consensus 44 ~~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 44 GENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCCEEEEEeCCccCCcEEEEEEEE
Confidence 3556777999999999999999975
No 164
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=30.83 E-value=2.2e+02 Score=22.25 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhccccCCCCC-eEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEeccc
Q 017588 207 SDQYKWLEADLNKVDRGKTP-WIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGHV 273 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH~ 273 (369)
.+-+++.+..++.. .+ -.|+++....+................+.|..+...|++++++|++.
T Consensus 18 ~~al~~A~aa~~~g----h~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~v~l~vC~~~ 81 (128)
T PRK00207 18 SSAYQFAQALLAEG----HELVSVFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEHGVALNVCVAA 81 (128)
T ss_pred HHHHHHHHHHHhCC----CCeeEEEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhcCCEEEEeHHH
Confidence 34456666665542 22 25777666655433322222111245677778879999999999876
No 165
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=29.82 E-value=1.2e+02 Score=21.36 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=22.1
Q ss_pred ccceEEEEEeCCCCCCCEEEEEeCCC
Q 017588 41 KSGEIHDVVVGPLKPNTVYYYRCGPD 66 (369)
Q Consensus 41 ~~~~~~~~~l~~L~p~t~Y~Y~v~~~ 66 (369)
..+..+...=.+|++|..|.|+|...
T Consensus 24 ~~G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 24 GTGTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred cCccEEEEECCCCCCCCEEEEEEEEE
Confidence 56777788888999999999999874
No 166
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=29.36 E-value=50 Score=30.13 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.4
Q ss_pred EEEEeCCCCCCCEEEEEeCC
Q 017588 46 HDVVVGPLKPNTVYYYRCGP 65 (369)
Q Consensus 46 ~~~~l~~L~p~t~Y~Y~v~~ 65 (369)
...+|.+|.|+|.||+-|-.
T Consensus 15 t~~t~~~L~p~t~YyfdVF~ 34 (300)
T PF10179_consen 15 TNQTLSGLKPDTTYYFDVFV 34 (300)
T ss_pred ceEEeccCCCCCeEEEEEEE
Confidence 44578899999999999853
No 167
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=29.29 E-value=88 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=12.4
Q ss_pred CeEEEEEeeCCCCCCcHHHHHHHHhcCCC
Q 017588 81 PIKFAIVGDLGQTGWTNSTLQHVAKSNYD 109 (369)
Q Consensus 81 ~~~f~~~gD~~~~~~~~~~~~~i~~~~~d 109 (369)
..+|+.+||.+..+ .++..++.+.-|+
T Consensus 64 ~~kfiLIGDsgq~D--peiY~~ia~~~P~ 90 (100)
T PF09949_consen 64 ERKFILIGDSGQHD--PEIYAEIARRFPG 90 (100)
T ss_pred CCcEEEEeeCCCcC--HHHHHHHHHHCCC
Confidence 34556666654332 3344444443343
No 168
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=28.95 E-value=2.7e+02 Score=21.65 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=35.7
Q ss_pred hHHHHHHHHhccccCCCCC-eEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecc
Q 017588 208 DQYKWLEADLNKVDRGKTP-WIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGH 272 (369)
Q Consensus 208 ~q~~Wl~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH 272 (369)
+-+++.+..++.. .+ ..|+++....+..................|..+...|++++++|.-
T Consensus 18 ~al~~A~aa~~~g----h~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~~ 79 (127)
T TIGR03012 18 SAYQFAQALLAKG----HEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCVA 79 (127)
T ss_pred HHHHHHHHHHHCC----CcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeHH
Confidence 4455666555542 22 3577777666544332222111124667888888899999999954
No 169
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=26.18 E-value=2.1e+02 Score=23.08 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=6.7
Q ss_pred hcCCCeEEecc
Q 017588 105 KSNYDMLLLPG 115 (369)
Q Consensus 105 ~~~~d~vl~~G 115 (369)
..+||.|++..
T Consensus 48 ~~~p~~vvi~~ 58 (171)
T cd04502 48 PYQPRRVVLYA 58 (171)
T ss_pred cCCCCEEEEEE
Confidence 45788766543
No 170
>cd02850 Cellulase_N_term Cellulase N-terminus domain. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually catagorized into either exoglucanases which sequentially release sugar units from the cellulose chain and endoglucanases which also attack the chain internally. The N-terminus of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=24.05 E-value=1.4e+02 Score=21.35 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.2
Q ss_pred cceEEEEEeCCC-CCCCEEEEEeCC
Q 017588 42 SGEIHDVVVGPL-KPNTVYYYRCGP 65 (369)
Q Consensus 42 ~~~~~~~~l~~L-~p~t~Y~Y~v~~ 65 (369)
....+.+.++.| +|||+|+-++..
T Consensus 54 g~~~~~~DFS~~~~pG~~Y~l~~~~ 78 (86)
T cd02850 54 GDNVHIIDFSSYRTEGTGYYLSVDG 78 (86)
T ss_pred cCeEEEEEcCCCcCCCCeEEEEECC
Confidence 347889999999 788899988876
No 171
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=23.74 E-value=73 Score=28.41 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCC
Q 017588 97 NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEE 176 (369)
Q Consensus 97 ~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~ 176 (369)
..+++++.+.+...++..|- ....|....++.+.. -.++++.|=|=+...... ...+....+......
T Consensus 22 ~~~l~~a~~~gv~~~~~~~~------~~~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~-~~~~~~l~~~l~~~~-- 89 (258)
T PRK11449 22 EASLQRAAQAGVGKIIVPAT------EAENFARVLALAERY---QPLYAALGLHPGMLEKHS-DVSLDQLQQALERRP-- 89 (258)
T ss_pred HHHHHHHHHCCCCEEEEeeC------CHHHHHHHHHHHHhC---CCEEEEEeeCcCccccCC-HHHHHHHHHHHHhCC--
Confidence 35666666777777777663 234565554444333 248889998865321110 011111111110000
Q ss_pred CCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHH
Q 017588 177 SGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAM 256 (369)
Q Consensus 177 ~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l 256 (369)
+ .+-.+-=|+||-+........|.++++..|+-+..-+.| |+.|..- ..+.+
T Consensus 90 -----~-----~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~P---v~iH~r~---------------a~~~~ 141 (258)
T PRK11449 90 -----A-----KVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLP---VILHSRR---------------THDKL 141 (258)
T ss_pred -----C-----CEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC---EEEEecC---------------ccHHH
Confidence 0 011233466774422223467999999999887654444 5567541 11456
Q ss_pred HHHHHhcCceEEEecccccceee
Q 017588 257 EGLIHQARVGVVFAGHVHAYERF 279 (369)
Q Consensus 257 ~~l~~~~~v~lvl~GH~H~~~r~ 279 (369)
.++++++++. ..|..|.|.-.
T Consensus 142 ~~il~~~~~~--~~~i~H~fsG~ 162 (258)
T PRK11449 142 AMHLKRHDLP--RTGVVHGFSGS 162 (258)
T ss_pred HHHHHhcCCC--CCeEEEcCCCC
Confidence 6677777542 24567776543
No 172
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=22.83 E-value=77 Score=28.95 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.9
Q ss_pred EEEeCCCCCCCEEEEEeCCC
Q 017588 47 DVVVGPLKPNTVYYYRCGPD 66 (369)
Q Consensus 47 ~~~l~~L~p~t~Y~Y~v~~~ 66 (369)
..+|.||+||+.|-..|...
T Consensus 261 tetI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred eeecccCCCCcEEEEEEEEe
Confidence 34899999999999888764
No 173
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=22.80 E-value=69 Score=26.07 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=14.3
Q ss_pred EEEEEeCCCCCCCEEEEE
Q 017588 45 IHDVVVGPLKPNTVYYYR 62 (369)
Q Consensus 45 ~~~~~l~~L~p~t~Y~Y~ 62 (369)
...-.+++|.|||.|+.+
T Consensus 101 lsaYqVtNL~pGTkY~is 118 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYIS 118 (184)
T ss_pred ceeEEeeccCCCcEEEEE
Confidence 345678999999999755
No 174
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.36 E-value=3e+02 Score=22.61 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=31.0
Q ss_pred hhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEec
Q 017588 207 SDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAG 271 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~G 271 (369)
++..+-+.+.|++.-. +. .|+..|+|.+... ....+.+.+.+.++|+++.|
T Consensus 56 ~~~~~~~~~~l~~~yp-~l--~i~g~~~g~~~~~-----------~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 56 PEVLEKAAERLRARYP-GL--KIVGYHHGYFGPE-----------EEEEIIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHHCC-Cc--EEEEecCCCCChh-----------hHHHHHHHHHHcCCCEEEEE
Confidence 4444555555555322 22 4566688876532 22347788888999999876
No 175
>PRK10425 DNase TatD; Provisional
Probab=22.28 E-value=78 Score=28.22 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCCCCCCccccccccccccccccCcCC
Q 017588 97 NSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEIEKLPIIHSTKFTSYNARWRMPFEE 176 (369)
Q Consensus 97 ~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~p~~~ 176 (369)
..+++...+.+...++..|-- ...|....+..+.. -.++++.|=|=...... ......... .+ -.
T Consensus 18 ~~vl~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~-~~~~~~~l~-~~--~~-- 82 (258)
T PRK10425 18 DDVVARAFAAGVNGMLITGTN------LRESQQAQKLARQY---PSCWSTAGVHPHDSSQW-QAATEEAII-EL--AA-- 82 (258)
T ss_pred HHHHHHHHHCCCCEEEEeCCC------HHHHHHHHHHHHhC---CCEEEEEEeCcCccccC-CHHHHHHHH-Hh--cc--
Confidence 456666666677777766642 24555544444332 23888899886531110 000111111 11 00
Q ss_pred CCCCCceeEEEEeCcEEEEEecCCCCCCCChhHHHHHHHHhccccCCCCCeEEEEeccCccccCCCCCCCcchHHHHHHH
Q 017588 177 SGSNSNLYYSFDAAGVHVVMLGSYTDFDQNSDQYKWLEADLNKVDRGKTPWIVVLIHAPWYNTNTAHQGEVESEGMRKAM 256 (369)
Q Consensus 177 ~~~~~~~~ys~~~g~~~~i~lds~~~~~~~~~q~~Wl~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l 256 (369)
.+ .+-.+-=|+||-.........|.++++.+|+-+..-+.| |+.|.+ . ..+.+
T Consensus 83 ----~~-----~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~P---v~iH~r-----~----------a~~~~ 135 (258)
T PRK10425 83 ----QP-----EVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMP---VFMHCR-----D----------AHERF 135 (258)
T ss_pred ----CC-----CEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCC---eEEEEe-----C----------chHHH
Confidence 00 001133466775432233467999999999887553444 566765 1 01355
Q ss_pred HHHHHhcCceEEEecccccceee
Q 017588 257 EGLIHQARVGVVFAGHVHAYERF 279 (369)
Q Consensus 257 ~~l~~~~~v~lvl~GH~H~~~r~ 279 (369)
.++++++... .-.|+.|+|.-+
T Consensus 136 l~iL~~~~~~-~~~~i~H~fsG~ 157 (258)
T PRK10425 136 MALLEPWLDK-LPGAVLHCFTGT 157 (258)
T ss_pred HHHHHHhccC-CCCeEEEecCCC
Confidence 5666665221 113556877544
No 176
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=22.09 E-value=84 Score=27.42 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=21.3
Q ss_pred CeEEEEEeeCCC-CCCcHHHHHHHHhc--CCCeEEecc
Q 017588 81 PIKFAIVGDLGQ-TGWTNSTLQHVAKS--NYDMLLLPG 115 (369)
Q Consensus 81 ~~~f~~~gD~~~-~~~~~~~~~~i~~~--~~d~vl~~G 115 (369)
.-+++++||.-. +..+.++++.+.+. +..++...|
T Consensus 38 ~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~G 75 (234)
T cd07423 38 GRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPG 75 (234)
T ss_pred CCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEEC
Confidence 457999999843 44566677766432 234555555
No 177
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.91 E-value=1.1e+02 Score=21.52 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=19.5
Q ss_pred cceEEEEEeC-CCCCCC-EEEEEeCCC
Q 017588 42 SGEIHDVVVG-PLKPNT-VYYYRCGPD 66 (369)
Q Consensus 42 ~~~~~~~~l~-~L~p~t-~Y~Y~v~~~ 66 (369)
+.=+++++|. .|.+|+ .|.|+|...
T Consensus 47 ~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 47 DDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 4556677888 889885 999999874
No 178
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=21.08 E-value=2.6e+02 Score=24.86 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhccccCCCCC-eEEEEeccCccccCCCCCCCcchHHHHHHHHHHHHhcCceEEEecc
Q 017588 207 SDQYKWLEADLNKVDRGKTP-WIVVLIHAPWYNTNTAHQGEVESEGMRKAMEGLIHQARVGVVFAGH 272 (369)
Q Consensus 207 ~~q~~Wl~~~L~~~~~~~~~-~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvl~GH 272 (369)
.+..+-.++.|.+. .| .+|+..|+..|... +. +.+.+-+.+.++|+++.|=
T Consensus 118 p~V~~~a~~~l~~~----~p~l~ivg~h~GYf~~~----------e~-~~i~~~I~~s~pdil~Vgm 169 (253)
T COG1922 118 PGVAEQAAAKLRAK----YPGLKIVGSHDGYFDPE----------EE-EAIVERIAASGPDILLVGM 169 (253)
T ss_pred HHHHHHHHHHHHHH----CCCceEEEecCCCCChh----------hH-HHHHHHHHhcCCCEEEEeC
Confidence 44444555555552 33 36777777766432 22 6788888899999999873
No 179
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.80 E-value=1.2e+02 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcC-ceEEEeccccc
Q 017588 251 GMRKAMEGLIHQAR-VGVVFAGHVHA 275 (369)
Q Consensus 251 ~~~~~l~~l~~~~~-v~lvl~GH~H~ 275 (369)
...+.+.+++++++ ..++++||.=.
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLG 74 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLG 74 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHH
T ss_pred HHHHHHHHHHhcccCccchhhccchH
Confidence 45567777777874 77999999864
No 180
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.57 E-value=2.1e+02 Score=20.65 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=35.6
Q ss_pred cHHHHHHHHhcCCCeEEeccccCCCCCChHHHHHHHHhhHhhhcCCcEEEccCCCCC
Q 017588 96 TNSTLQHVAKSNYDMLLLPGDLSYADLDQPLWDSFGRMVEPLASQRPWMVTQGNHEI 152 (369)
Q Consensus 96 ~~~~~~~i~~~~~d~vl~~GD~~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 152 (369)
...+++.+....||+++.-.++....+ ..+.+.++......|++++..+++.
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~~-----~~~~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGDG-----LELLEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSBH-----HHHHHHHHHHTTTSEEEEEESSTSH
T ss_pred HHHHHHHhcccCceEEEEEeeeccccc-----cccccccccccccccEEEecCCCCH
Confidence 456778888889999999887765322 1233444444457899988877774
No 181
>TIGR03487 cas_csp2 CRISPR-associated protein, Csp2 family. Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pging (Porphyromonas gingivalis) subtype.
Probab=20.31 E-value=2.4e+02 Score=25.73 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=36.0
Q ss_pred ccceEEEEEeCCCCCCCEEEEEeCCCCCCeeEEECCCCCCCeEEEEEeeCCCCCC--cHHHHHHHHhcCCCeEEeccccC
Q 017588 41 KSGEIHDVVVGPLKPNTVYYYRCGPDSAQERSFKTPPAQLPIKFAIVGDLGQTGW--TNSTLQHVAKSNYDMLLLPGDLS 118 (369)
Q Consensus 41 ~~~~~~~~~l~~L~p~t~Y~Y~v~~~~s~~~~F~t~~~~~~~~f~~~gD~~~~~~--~~~~~~~i~~~~~d~vl~~GD~~ 118 (369)
.++|--..+|+.|+|. +.|+|+.+.. +.-|.|.++-|.-.... ..++.+++.-....-=+++||++
T Consensus 145 eq~fgiistltplkp~--~qykigk~gq----------pemfn~ciipdipi~emvdfi~lf~km~iq~lngd~l~gdiv 212 (489)
T TIGR03487 145 EQGFGIISTLTPLKPA--FQYKIGKDGQ----------PEMFNFCIIPDIPINEMVDFIALFDKMQIQHLNGDALLGDIV 212 (489)
T ss_pred hccceeEeecccCcHH--HHhhhccCCC----------cccceeEEecCCcHHHHHHHHHHHHHhhhhhcccchhccccc
Confidence 4556666677778775 5677776311 24567788888743321 12333444333333334567775
Done!