Query 017592
Match_columns 369
No_of_seqs 142 out of 1551
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.9E-37 6.6E-42 300.5 23.2 322 8-368 136-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 3E-20 1E-24 177.4 20.5 295 7-351 128-433 (451)
3 3o7q_A L-fucose-proton symport 99.8 2.8E-17 9.5E-22 156.2 26.1 266 7-343 126-424 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.7 2.2E-16 7.7E-21 152.4 18.0 139 220-359 327-479 (491)
5 2cfq_A Lactose permease; trans 99.7 4E-16 1.4E-20 147.9 16.1 141 220-360 267-408 (417)
6 2gfp_A EMRD, multidrug resista 99.5 4.4E-15 1.5E-19 138.2 3.7 248 8-327 98-352 (375)
7 2xut_A Proton/peptide symporte 99.5 1.1E-13 3.7E-18 134.7 10.1 87 281-367 421-518 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.8E-11 6.1E-16 116.3 20.6 141 217-357 67-212 (451)
9 3o7q_A L-fucose-proton symport 99.3 2.7E-10 9.3E-15 107.7 23.2 110 216-325 65-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.3 3.7E-10 1.3E-14 108.7 22.6 138 217-354 59-199 (491)
11 2gfp_A EMRD, multidrug resista 99.2 2.6E-10 8.9E-15 105.8 15.2 142 217-358 40-181 (375)
12 2xut_A Proton/peptide symporte 99.1 2.3E-09 7.9E-14 104.0 19.2 134 218-351 60-198 (524)
13 4gc0_A D-xylose-proton symport 98.8 2.5E-07 8.7E-12 88.6 17.7 103 222-324 65-185 (491)
14 2cfq_A Lactose permease; trans 98.0 4.4E-06 1.5E-10 78.5 5.1 135 218-355 49-191 (417)
15 2g9p_A Antimicrobial peptide l 46.2 13 0.00045 18.4 1.8 14 232-245 3-16 (26)
16 3sri_B Rhoptry NECK protein 2; 32.8 5.7 0.0002 20.6 -0.8 19 10-28 3-21 (29)
17 3sk7_A Protein SEQA; sequestra 31.5 19 0.00064 26.4 1.4 26 80-105 74-99 (116)
18 1j3e_A SEQA protein; protein-D 25.9 27 0.00091 25.6 1.4 26 80-105 73-98 (115)
19 1lrr_A SEQA protein; protein-D 20.6 39 0.0013 25.3 1.4 26 80-105 89-114 (131)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.9e-37 Score=300.49 Aligned_cols=322 Identities=20% Similarity=0.212 Sum_probs=214.3
Q ss_pred eeccCc---chhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc--------cCCCchhhHhhhhHHHHHHHH
Q 017592 8 WERRCG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLA 76 (369)
Q Consensus 8 ~G~g~~---~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~~~--------~~~~WR~~~~~~~ip~~i~~~ 76 (369)
.|+|.| ++..+|++|++|+++||+..++.+.++..|.+++..+.+... ..+.||+++.++.+|.++.++
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM 215 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh
Confidence 355554 677789999999999999999999999999999887776542 235799999999999999999
Q ss_pred HHhhccCChhhHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccccccccCCCCCccCCCchhhHH
Q 017592 77 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 156 (369)
Q Consensus 77 ~~~~lpESP~~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (369)
.++++|||||||..|+|.||+++.++|.++.+..+.. .. +.++..+. . ++ ....
T Consensus 216 ~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~---~~--------------~~~~~~~~-------~-~~-~~~~ 269 (491)
T 4gc0_A 216 LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA---VQ--------------EIKHSLDH-------G-RK-TGGR 269 (491)
T ss_dssp HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HH--------------HHHHHHHH-------H-HH-HTTH
T ss_pred hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH---HH--------------HHHHHHHh-------h-hh-hhhH
Confidence 9999999999999999999999999998764321100 00 00000000 0 00 0001
Q ss_pred HHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHH
Q 017592 157 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 236 (369)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~i~~~~l~ 236 (369)
...++ .++..+.....++.+...++.+..+.+.+.... ............+.++..+++.+++++++
T Consensus 270 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (491)
T 4gc0_A 270 LLMFG--VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTV 336 (491)
T ss_dssp HHHSC--CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 112222222223333333334444444333111 11222233445666788889999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHhh---c-cchhHHHHHHH-HHHHHHhhhhHHHHHhhcccccccchhhhHHHHHHHHH
Q 017592 237 DTAGRKLSITIMFTLSCLFLLPLVT---Y-QSNILTTGLLF-GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR 311 (369)
Q Consensus 237 dr~GRR~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~ 311 (369)
||+|||+.++.+...+++.++.+.. . ..........+ ....+..+..++.|++.+|+||+++|+++.|+++.+++
T Consensus 337 dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 337 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred HhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 9999999988776655554443321 1 12222222221 22223344456789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHHHHHHhccCcCCCCCCCCcccccC
Q 017592 312 IGGMVCPLVAVALVANC------HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 368 (369)
Q Consensus 312 i~~~~~p~~~~~l~~~~------~~~~~~~~~~~~~~i~~~~~~~~~pETkg~~l~e~~~~~~ 368 (369)
++++++++++|.+.+.. +...++++++++++++.+++++++||||||+|||+.+..|
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999888664421 2234678888888888888888899999999999766544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.85 E-value=3e-20 Score=177.35 Aligned_cols=295 Identities=12% Similarity=0.121 Sum_probs=179.5
Q ss_pred eeeccCc---chhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccCCC-chhhHhhhhHHHHHH-HHHHhhc
Q 017592 7 FWERRCG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFIL-LAFLGFQ 81 (369)
Q Consensus 7 ~~G~g~~---~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~-~~~~~~l 81 (369)
+.|+|.+ +...+++.|+.|+++||++.++.+.+..+|.++++.++..+....+ ||.+|.+.+++.++. ++..+.+
T Consensus 128 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 128 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466554 5667899999999999999999999999999998877755555677 999999988777665 4456789
Q ss_pred cCChhhHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccccccccCCCCCccCCCchhhHHHHhhc
Q 017592 82 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS 161 (369)
Q Consensus 82 pESP~~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (369)
||+|+....+.+. +. . + +.+.+.++ +..++...+. ...+..++
T Consensus 208 ~~~~~~~~~~~~~-~~-----------~-~--------~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~ 250 (451)
T 1pw4_A 208 RDTPQSCGLPPIE-EY-----------K-N--------DYPDDYNE---------------KAEQELTAKQ-IFMQYVLP 250 (451)
T ss_dssp CCSSTTTCCCSCT-TT-----------C-C--------C----------------------------CCTH-HHHHHTSS
T ss_pred cCCHhhcCCCChh-hh-----------c-c--------cccccchh---------------hhhccccccc-chHHHHHc
Confidence 9999764211110 00 0 0 00000000 0000000000 01233333
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhh--
Q 017592 162 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-- 239 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~i~~~~l~dr~-- 239 (369)
++ +.....+..+.....+++...+.|.+... ..+.+....-....+..++.+++.++.+.++||+
T Consensus 251 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 317 (451)
T 1pw4_A 251 NK---LLWYIAIANVFVYLLRYGILDWSPTYLKE----------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 317 (451)
T ss_dssp CH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTT----------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 22223333344445555665566654321 0112212222334455677888999999999999
Q ss_pred chhHHHHHHHHHHH-HHHHHHhhcc--chhHHHHHHHHHHHHHhhhhHHHHHhhcccccccchhhhHHHHHHHHHH-HHH
Q 017592 240 GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGM 315 (369)
Q Consensus 240 GRR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~i-~~~ 315 (369)
|||+.+..+..+.. +..+.+.... +........+...++..+.+...+.+..|.+|++.|+++.|+.+.+..+ ++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 318 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 99998877655444 3333322221 2222223333333334445566788999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 017592 316 VCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 351 (369)
Q Consensus 316 ~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 351 (369)
++|.+.+.+.+..+....+.+.+++.+++.++.++.
T Consensus 398 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887665556677677666666555444
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=2.8e-17 Score=156.19 Aligned_cols=266 Identities=10% Similarity=-0.034 Sum_probs=160.9
Q ss_pred eeeccCc---chhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc-cCCC-----------------------
Q 017592 7 FWERRCG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PRLD----------------------- 59 (369)
Q Consensus 7 ~~G~g~~---~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~~~-~~~~----------------------- 59 (369)
+.|+|.+ +...+++.|+.|+++|++..++.+.+..+|.+++..++..+. ...+
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 4466664 566789999999999999999999999999999988766654 4333
Q ss_pred --chhhHhhhhHHHHHHHHHH--hhccCChhhHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccc
Q 017592 60 --WRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 135 (369)
Q Consensus 60 --WR~~~~~~~ip~~i~~~~~--~~lpESP~~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (369)
||+++.+.+++.++..+.. ...||+++.. + + ++
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~-----------------~--------------~~-------- 242 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----H-----------------S--------------DA-------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----C-----------------C--------------CS--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----c-----------------c--------------cc--------
Confidence 9999977766555544332 2356654210 0 0 00
Q ss_pred cccccCCCCCccCCCchhhHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccCCCCcccCCCCChhh
Q 017592 136 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQDANL 214 (369)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~ 214 (369)
++++....++++++++..+...+. .+.....+++...+.|.+ ... ..+.+....
T Consensus 243 ------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~ 297 (438)
T 3o7q_A 243 ------------KQGSFSASLSRLARIRHWRWAVLA---QFCYVGAQTACWSYLIRYAVEE----------IPGMTAGFA 297 (438)
T ss_dssp ------------STTSHHHHHHHHTTCSHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----------STTCCHHHH
T ss_pred ------------cccchhhhHHHHHhChHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhc----------cCCcchhHH
Confidence 000011245555654433322222 222222333333333433 211 001111122
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHhhcccc
Q 017592 215 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 294 (369)
Q Consensus 215 ~~~~~i~~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 294 (369)
-....+..++.+++.++.++++||+|||+++..+.+++++..+......+... ........++....++..+.+..|.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 376 (438)
T 3o7q_A 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNL 376 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22334556778889999999999999999998877666555444443332222 22223333444455677889999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHH
Q 017592 295 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVT 343 (369)
Q Consensus 295 Pt~vR~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i 343 (369)
|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+.+++.++
T Consensus 377 ~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 377 GQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp GGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred ccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 988 999988877 778999999999988887765 44445544444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=2.2e-16 Score=152.42 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=82.1
Q ss_pred HHHhhhhhHHHHHHHHHhhhchhHHHH-----HHHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHHHhhhhHH
Q 017592 220 ITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLFLLPLVTY---------QSNILTTGLLFGARMCVMGAFTV 285 (369)
Q Consensus 220 i~~~~~~~g~i~~~~l~dr~GRR~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 285 (369)
+..+..+++..+.+.++||+|||+... .+..+.++..+.+... .+............+......+.
T Consensus 327 ~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 327 LNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred cchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 334556667788899999999986543 3333333322222210 01122222222222222233456
Q ss_pred HHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCcCCCCC
Q 017592 286 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 359 (369)
Q Consensus 286 ~~~~~~ElfPt~vR~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pETkg~~ 359 (369)
.+.+..|.+|++.|+++.|+.+....++++++|.+.+.+.+. +....+..++++.+++.++.+++.|+++++.
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999887755443 3345667777777777777777777777653
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.69 E-value=4e-16 Score=147.87 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=96.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHhhcccccccch
Q 017592 220 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 299 (369)
Q Consensus 220 i~~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR 299 (369)
+..+..+++.++.++++||+|||+++..+..+.++..+......+............++........+.+.+|.+|++.|
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 44556778889999999999999988776665554433333322222211111111122222234567899999999999
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCcCCCCCC
Q 017592 300 STGAGAA-NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 360 (369)
Q Consensus 300 ~~~~g~~-~~~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pETkg~~l 360 (369)
+++.++. +..++++++++|.+.+.+.+..+....+.+.+++.+++.++.+++.||+|..+|
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 9999996 666779999999999888776554456667777777777776777788887665
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.51 E-value=4.4e-15 Score=138.23 Aligned_cols=248 Identities=11% Similarity=-0.019 Sum_probs=136.6
Q ss_pred eeccCc---chhhHhHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHhhhhHHHHHHHH-HHhhccC
Q 017592 8 WERRCG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPE 83 (369)
Q Consensus 8 ~G~g~~---~~~~~y~~E~~p~~~Rg~~~~~~~~~~~~G~l~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpE 83 (369)
.|++.+ +...+++.|+.|+++|++..+..+....+|.+++..++..+.+..+||..+.+.++..++..+ ..+.+||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 455554 556678999999999999999999999999999988887776667999999988887776655 5567888
Q ss_pred ChhhHhhcCChHHHHHHHHHHHHHcCCCCCCccccccccCCCCCCCCCcccccccccCCCCCccCCCchhhHHHHhhcch
Q 017592 84 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK 163 (369)
Q Consensus 84 SP~~l~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (369)
+|+... ++ + +.. ..+++.++++
T Consensus 178 ~~~~~~--~~-----------------~---------------~~~------------------------~~~~~~~~~~ 199 (375)
T 2gfp_A 178 TRPVDA--PR-----------------T---------------RLL------------------------TSYKTLFGNS 199 (375)
T ss_dssp CSTTTC--CC-----------------C---------------CTT------------------------TCSTHHHHHH
T ss_pred cCCCCc--cc-----------------c---------------cHH------------------------HHHHHHhcCc
Confidence 764310 00 0 000 0111222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhchhH
Q 017592 164 LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 243 (369)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~i~~~~l~dr~GRR~ 243 (369)
. ........+.....+++...+.|.+.... .+.+....-.......++.+++.++.+.+.||.|||.
T Consensus 200 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 266 (375)
T 2gfp_A 200 G---FNCYLLMLIGGLAGIAAFEACSGVLMGAV----------LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM 266 (375)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHCSCSSHHH----------HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222222223333344433333222100 0000001111122334455666666677777776632
Q ss_pred HHHHHH-HHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhhhhHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 017592 244 SITIMF-TLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 320 (369)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~i~~~~~p~~ 320 (369)
...... ...+........ ..+.+..........++....++....+..|.+| +.|+++.|+.+....+++.++|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 267 WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 221111 111111111111 1111111122222223333334567888999999 899999999999999999999988
Q ss_pred HHHHHhh
Q 017592 321 AVALVAN 327 (369)
Q Consensus 321 ~~~l~~~ 327 (369)
...+.+.
T Consensus 346 ~g~l~~~ 352 (375)
T 2gfp_A 346 SAMLPQT 352 (375)
T ss_dssp CTHHHHH
T ss_pred HHHHhcC
Confidence 7766554
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.47 E-value=1.1e-13 Score=134.69 Aligned_cols=87 Identities=10% Similarity=0.023 Sum_probs=52.0
Q ss_pred hhhHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhch----------h-hHHHHHHHHHHHHHHHHHH
Q 017592 281 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH----------Q-MTAVVLLVVVIVTSILSVM 349 (369)
Q Consensus 281 ~~~~~~~~~~~ElfPt~vR~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~----------~-~~~~~~~~~~~~i~~~~~~ 349 (369)
...+..+.+..|.+|++.|+++.|+.+....++++++|.+.+.+.+..+ . ...+.+++++.+++.++.+
T Consensus 421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999887654211 1 1125556666666666666
Q ss_pred hccCcCCCCCCCCccccc
Q 017592 350 LIPFETKGQELSDTVDFT 367 (369)
Q Consensus 350 ~~~pETkg~~l~e~~~~~ 367 (369)
++.+++++++.++..++.
T Consensus 501 ~~~~~~~~~~~~~~~~~~ 518 (524)
T 2xut_A 501 LYARSYQMQDHYRQATGS 518 (524)
T ss_dssp ------------------
T ss_pred HHHHHhccchhhhhhhcc
Confidence 677888887766555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=1.8e-11 Score=116.33 Aligned_cols=141 Identities=13% Similarity=0.020 Sum_probs=100.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhhhhHHHHHhhcc
Q 017592 217 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAE 292 (369)
Q Consensus 217 ~~~i~~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 292 (369)
...+..+...++.++.+.++||+|||+++..+.++.++..+.... ..+.+...+..++..++.....+....+.+|
T Consensus 67 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 146 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 344556777888999999999999999998887766655544443 3333333333333333333445677889999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHhccCcCCC
Q 017592 293 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 357 (369)
Q Consensus 293 lfPt~vR~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~pETkg 357 (369)
.+|.+.|+++.|+......++.+++|.+...+.+..+ +..++++.+++.++..++.+++.||++.
T Consensus 147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999999999999999999998887666655 5556777776666655555555677654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.33 E-value=2.7e-10 Score=107.75 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=80.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hhccchhHHHHHHHHHHHHHhhhhHHHHHhhcc
Q 017592 216 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 292 (369)
Q Consensus 216 ~~~~i~~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 292 (369)
+......+...++.++.+.++||+|||+.+..+.++.++..+.. ....+.+...+..++..++.....+....+.+|
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 144 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH
Confidence 33445566778889999999999999999988777666554444 222232222222333333334445677889999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017592 293 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 325 (369)
Q Consensus 293 lfPt~vR~~~~g~~~~~~~i~~~~~p~~~~~l~ 325 (369)
.+|.+.|+++.++.+....++.+++|.+...+.
T Consensus 145 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887766
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=3.7e-10 Score=108.67 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=95.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHhhccccc
Q 017592 217 DEFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 295 (369)
Q Consensus 217 ~~~i~~~~~~~g~i~~~~l~dr-~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 295 (369)
...+..++..++.++.|.++|| +|||+++..+.++.++..+......+.....+..++..++.....+....+.+|.+|
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 3445567778889999999999 899999988877666655544443333333333333333334455678899999999
Q ss_pred ccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCc
Q 017592 296 TSV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 354 (369)
Q Consensus 296 t~v--R~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pE 354 (369)
.+. |+++.++.+....++..++|.+...+.+..++...+.+.++..+++.+..++..|+
T Consensus 139 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 139 EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 998 66677777788889999999998888776666666666665555555554443333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.20 E-value=2.6e-10 Score=105.79 Aligned_cols=142 Identities=15% Similarity=0.033 Sum_probs=98.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHhhcccccc
Q 017592 217 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 296 (369)
Q Consensus 217 ~~~i~~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 296 (369)
......+...++.++.+.++||+|||+.+..+..+.++..+......+.+......+...++.....+....+.+|.+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 119 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence 33455667778888999999999999998877766555544433322222222222233333333456678899999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCcCCCC
Q 017592 297 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 358 (369)
Q Consensus 297 ~vR~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pETkg~ 358 (369)
+.|+++.++.+....++..++|.+...+.+..++...+.+.++..++..+...+..||++.+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 99999999999999999999999888776655555566666666666555455566887654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.14 E-value=2.3e-09 Score=103.99 Aligned_cols=134 Identities=16% Similarity=0.048 Sum_probs=89.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhhhhHHHHHhhccccc
Q 017592 218 EFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 295 (369)
Q Consensus 218 ~~i~~~~~~~g~i~~~~l~dr~-GRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 295 (369)
..+..+...++.++.|.++||+ |||+++..+.++.++..+...... +........++..++.....+....+.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3445666778889999999999 999998887766655544444333 33222222233333333445677899999999
Q ss_pred ccchhhhHHH---HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 017592 296 TSVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 351 (369)
Q Consensus 296 t~vR~~~~g~---~~~~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 351 (369)
++.|++..+. .+....++..++|.+...+.+..++...+.+.+++.+++.+..++.
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999776655 7777889999999887777765555556666666655555444443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.77 E-value=2.5e-07 Score=88.64 Aligned_cols=103 Identities=17% Similarity=0.021 Sum_probs=69.4
Q ss_pred HhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh------------------ccchhHHHHHHHHHHHHHhhhh
Q 017592 222 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT------------------YQSNILTTGLLFGARMCVMGAF 283 (369)
Q Consensus 222 ~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 283 (369)
.++.++|.++.|.++||+|||+.+..+.++..+..+...+ ..+.....+.=++.++...+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999998876655444333221 0111111122233334444556
Q ss_pred HHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017592 284 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 324 (369)
Q Consensus 284 ~~~~~~~~ElfPt~vR~~~~g~~~~~~~i~~~~~p~~~~~l 324 (369)
+....+.+|..|++.|++..++......++...++.....+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 77899999999999999999988877767776666555433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.00 E-value=4.4e-06 Score=78.54 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=65.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---hhcc---chhHHHHHHHHHHHHHhhhhHHHHHhhc
Q 017592 218 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAA 291 (369)
Q Consensus 218 ~~i~~~~~~~g~i~~~~l~dr~GRR~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (369)
.....++..++.++.|.++||+|||+++..+..+.++..... .... .... .............++.......
T Consensus 49 ~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~ 126 (417)
T 2cfq_A 49 FAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL--VGSIVGGIYLGFCFNAGAPAVE 126 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCC--HHHHGGGSSTTHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHH
Confidence 345567788899999999999999999887655432211111 0000 0000 0000000000001111111222
Q ss_pred ccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccCcC
Q 017592 292 EIYPT--SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 355 (369)
Q Consensus 292 ElfPt--~vR~~~~g~~~~~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~pET 355 (369)
+..|. +.|+.+.|.....+.++..++|.+...+.+. ++...+++.++..++..+..++.+||+
T Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 127 AFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 22222 3345555666666678888888887766653 333344443333333333334445555
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=46.21 E-value=13 Score=18.35 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHhhhchhHHH
Q 017592 232 AAILVDTAGRKLSI 245 (369)
Q Consensus 232 ~~~l~dr~GRR~~~ 245 (369)
.+-++.++|||.+-
T Consensus 3 fgklikkfgrkais 16 (26)
T 2g9p_A 3 FGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHTSHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 56788999999753
No 16
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=32.82 E-value=5.7 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.1
Q ss_pred ccCcchhhHhHhhhcCCCc
Q 017592 10 RRCGHVFLSWFLEFVPPSN 28 (369)
Q Consensus 10 ~g~~~~~~~y~~E~~p~~~ 28 (369)
+|.||+...|.+-+.||+.
T Consensus 3 IG~GP~tSCyTs~~~PPkq 21 (29)
T 3sri_B 3 IGAGPVASCFTTRMSPPQQ 21 (29)
T ss_dssp TCCCCCCSEEEESSSSCCE
T ss_pred cccCcchheeecccCchHH
Confidence 6788999999998888874
No 17
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=31.52 E-value=19 Score=26.43 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.1
Q ss_pred hccCChhhHhhcCChHHHHHHHHHHH
Q 017592 80 FQPESPRYLCLKGRTAEAHRALEKIA 105 (369)
Q Consensus 80 ~lpESP~~l~~~g~~~~A~~~l~~~~ 105 (369)
-+|+||.|.....++.+-+..|+++-
T Consensus 74 ~Ip~TpfWViTN~NT~rKr~ml~~vm 99 (116)
T 3sk7_A 74 AIPNTPFWVITNNNTSRKQQMVEQVM 99 (116)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred cCCCCCeeEEeCCCcHHHHHHHHHHH
Confidence 58999999999999888887777753
No 18
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=25.90 E-value=27 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.1
Q ss_pred hccCChhhHhhcCChHHHHHHHHHHH
Q 017592 80 FQPESPRYLCLKGRTAEAHRALEKIA 105 (369)
Q Consensus 80 ~lpESP~~l~~~g~~~~A~~~l~~~~ 105 (369)
.+|+||.|.....+..+-+..++++-
T Consensus 73 ~Ip~TpfWViTN~NT~rKr~ml~~vm 98 (115)
T 1j3e_A 73 HVPGTPYWVITNTNTGRKCSMIEHIM 98 (115)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred cCCCCCeeeeecCChHHHHHHHHHHH
Confidence 58999999999999888887777753
No 19
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=20.56 E-value=39 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.1
Q ss_pred hccCChhhHhhcCChHHHHHHHHHHH
Q 017592 80 FQPESPRYLCLKGRTAEAHRALEKIA 105 (369)
Q Consensus 80 ~lpESP~~l~~~g~~~~A~~~l~~~~ 105 (369)
.+|+||.|-....+..+-+..++++-
T Consensus 89 ~Ip~TpfWViTN~NT~rKr~ml~~vm 114 (131)
T 1lrr_A 89 HVPGTPYWVITNTNTGRKCSMIEHIM 114 (131)
T ss_dssp ECTTSSCEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCeEEEecCChHHHHHHHHHHH
Confidence 58999999999999888887777753
Done!