BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017593
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
 pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
          Length = 632

 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 219 EEGARKIAVSGLPPMGCLPAVITLNSYNALLQRGCIEKY-SFVARQFNLMLQNEVNSMHF 277
           + GAR I V  LP +G  PA             G ++ + S ++  FN  L  ++     
Sbjct: 186 QAGARYIVVWLLPDLGLTPATFG----------GPLQPFASQLSGTFNAELTAQL----- 230

Query: 278 GTAHLGAKIYFVDIYAPLADMIQGKGRLGF--DEVDTGCCGSGYLEAGFLCNPNSIV--- 332
             +  GA +  ++I   L + +      G   D+   G C SG    G   NP   +   
Sbjct: 231 --SQAGANVIPLNIPLLLKEGMANPASFGLAADQNLIGTCFSG---NGCTMNPTYGINGS 285

Query: 333 CADPSKYVFWDSIHPT 348
             DPSK +F DS+HPT
Sbjct: 286 TPDPSKLLFNDSVHPT 301


>pdb|1S2X|A Chain A, Crystal Structure Of Cag-Z From Helicobacter Pylori
          Length = 206

 Score = 31.2 bits (69), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 9/51 (17%)

Query: 90  TDFVASYVGLKEYLPPYLDPNLSMEDLMTGVSFASAGSGFDPLTPRISEVI 140
           +D VASY+  +EYLPP++D N        GV+F     G D    +++E++
Sbjct: 131 SDLVASYLP-REYLPPFIDGN------XXGVAFQIL--GIDDFGKKLNEIV 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,590,110
Number of Sequences: 62578
Number of extensions: 444848
Number of successful extensions: 747
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 2
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)