Query 017595
Match_columns 369
No_of_seqs 179 out of 2042
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 3.3E-46 7.1E-51 334.5 28.6 338 23-369 2-342 (342)
2 PF00891 Methyltransf_2: O-met 100.0 6.8E-40 1.5E-44 293.2 21.4 237 108-346 2-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 1.6E-38 3.5E-43 294.0 25.9 289 40-356 3-305 (306)
4 COG2226 UbiE Methylase involve 99.8 7.8E-18 1.7E-22 147.0 17.1 154 205-363 50-230 (238)
5 TIGR00740 methyltransferase, p 99.8 1.7E-18 3.7E-23 154.6 11.2 164 205-368 52-238 (239)
6 PLN02233 ubiquinone biosynthes 99.8 4.7E-17 1E-21 146.8 19.8 157 204-364 71-255 (261)
7 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.6E-18 5.6E-23 154.0 10.1 154 205-359 55-232 (247)
8 PF01209 Ubie_methyltran: ubiE 99.7 9.6E-19 2.1E-23 154.3 5.7 161 204-368 45-232 (233)
9 TIGR02752 MenG_heptapren 2-hep 99.7 8.6E-17 1.9E-21 143.0 16.6 169 196-369 36-231 (231)
10 PTZ00098 phosphoethanolamine N 99.7 7.1E-17 1.5E-21 145.8 16.1 156 194-359 41-204 (263)
11 PRK14103 trans-aconitate 2-met 99.7 2.9E-16 6.4E-21 141.6 16.2 157 194-354 18-181 (255)
12 PLN02244 tocopherol O-methyltr 99.7 6E-16 1.3E-20 144.9 16.3 151 205-359 117-280 (340)
13 KOG1540 Ubiquinone biosynthesi 99.7 1.5E-15 3.3E-20 130.2 16.2 145 204-354 98-278 (296)
14 PRK00216 ubiE ubiquinone/menaq 99.7 4.7E-15 1E-19 132.3 20.2 169 196-369 42-238 (239)
15 PLN02490 MPBQ/MSBQ methyltrans 99.7 3E-15 6.6E-20 138.3 15.9 139 206-359 113-258 (340)
16 COG2230 Cfa Cyclopropane fatty 99.7 1.7E-15 3.7E-20 134.7 13.3 158 193-359 60-225 (283)
17 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 7.8E-15 1.7E-19 129.5 17.3 169 196-369 30-223 (223)
18 PLN02336 phosphoethanolamine N 99.6 3.9E-15 8.5E-20 146.2 16.0 152 194-358 255-415 (475)
19 TIGR00452 methyltransferase, p 99.6 6.4E-15 1.4E-19 135.1 14.7 156 194-359 110-275 (314)
20 PF02353 CMAS: Mycolic acid cy 99.6 2.2E-15 4.8E-20 135.9 11.4 161 194-359 51-219 (273)
21 smart00828 PKS_MT Methyltransf 99.6 2.9E-15 6.3E-20 132.5 11.5 137 208-360 1-147 (224)
22 PRK15068 tRNA mo(5)U34 methylt 99.6 5.2E-15 1.1E-19 137.2 13.2 154 196-359 113-276 (322)
23 PF13489 Methyltransf_23: Meth 99.6 3.4E-15 7.3E-20 124.8 10.2 137 204-354 20-160 (161)
24 PRK11207 tellurite resistance 99.6 1.5E-14 3.2E-19 125.1 13.5 141 195-356 20-169 (197)
25 PRK11873 arsM arsenite S-adeno 99.6 3.2E-14 7E-19 129.6 14.9 145 204-357 75-230 (272)
26 PRK01683 trans-aconitate 2-met 99.6 8.8E-14 1.9E-18 125.7 17.7 156 194-352 20-182 (258)
27 PLN02396 hexaprenyldihydroxybe 99.6 5.8E-15 1.3E-19 136.0 9.7 145 206-358 131-290 (322)
28 PF12847 Methyltransf_18: Meth 99.6 4.2E-15 9E-20 116.6 7.4 97 207-303 2-111 (112)
29 PRK08317 hypothetical protein; 99.6 6E-14 1.3E-18 125.1 15.9 156 196-357 10-176 (241)
30 PF13847 Methyltransf_31: Meth 99.6 4.4E-15 9.5E-20 123.2 7.1 137 205-349 2-152 (152)
31 PRK06922 hypothetical protein; 99.6 2.6E-14 5.7E-19 139.8 12.9 142 167-309 378-543 (677)
32 PRK11036 putative S-adenosyl-L 99.6 3.5E-14 7.7E-19 128.0 12.8 156 195-359 35-209 (255)
33 COG4106 Tam Trans-aconitate me 99.5 7.7E-14 1.7E-18 116.9 12.5 178 187-369 13-203 (257)
34 PRK05785 hypothetical protein; 99.5 5.7E-13 1.2E-17 117.6 17.3 155 206-369 51-224 (226)
35 PRK06202 hypothetical protein; 99.5 7.2E-13 1.6E-17 117.8 16.7 143 205-358 59-223 (232)
36 TIGR02072 BioC biotin biosynth 99.5 5.6E-13 1.2E-17 118.9 15.7 136 206-356 34-175 (240)
37 TIGR00477 tehB tellurite resis 99.5 2.6E-13 5.6E-18 117.2 12.9 140 196-356 21-168 (195)
38 PF08241 Methyltransf_11: Meth 99.5 3.3E-14 7.2E-19 107.6 6.2 88 211-301 1-95 (95)
39 TIGR02021 BchM-ChlM magnesium 99.5 7.5E-13 1.6E-17 116.6 15.0 145 205-359 54-208 (219)
40 smart00138 MeTrc Methyltransfe 99.5 1E-12 2.3E-17 118.5 15.4 100 205-304 98-243 (264)
41 KOG4300 Predicted methyltransf 99.5 5.2E-13 1.1E-17 111.1 11.7 177 180-364 51-239 (252)
42 PF06080 DUF938: Protein of un 99.5 3.3E-12 7.1E-17 108.4 16.6 158 209-369 28-204 (204)
43 PF08242 Methyltransf_12: Meth 99.5 1.4E-14 3.1E-19 110.9 2.1 87 211-299 1-99 (99)
44 PLN02336 phosphoethanolamine N 99.5 5.1E-13 1.1E-17 131.3 13.2 145 194-355 26-180 (475)
45 TIGR00537 hemK_rel_arch HemK-r 99.5 1.4E-12 3.1E-17 111.2 14.0 133 206-369 19-177 (179)
46 PRK04266 fibrillarin; Provisio 99.5 3.4E-12 7.5E-17 112.1 16.3 142 200-368 67-224 (226)
47 PRK10258 biotin biosynthesis p 99.4 3.7E-12 7.9E-17 114.7 16.5 148 193-352 30-182 (251)
48 PRK08287 cobalt-precorrin-6Y C 99.4 1.2E-12 2.6E-17 112.4 12.5 125 199-358 25-157 (187)
49 TIGR03587 Pse_Me-ase pseudamin 99.4 9.5E-13 2.1E-17 114.2 11.9 102 205-308 42-147 (204)
50 PRK11705 cyclopropane fatty ac 99.4 1.9E-12 4E-17 122.8 14.0 155 194-359 156-314 (383)
51 KOG1270 Methyltransferases [Co 99.4 2.6E-13 5.6E-18 117.4 6.8 141 208-357 91-249 (282)
52 KOG2361 Predicted methyltransf 99.4 2.6E-12 5.6E-17 109.8 12.1 144 209-355 74-235 (264)
53 PRK12335 tellurite resistance 99.4 2.3E-12 5E-17 118.1 12.7 131 206-356 120-258 (287)
54 PF08003 Methyltransf_9: Prote 99.4 1.2E-12 2.6E-17 116.6 9.7 157 193-359 103-269 (315)
55 PF13649 Methyltransf_25: Meth 99.4 2E-13 4.4E-18 105.0 4.0 88 210-297 1-101 (101)
56 PRK07580 Mg-protoporphyrin IX 99.4 5E-12 1.1E-16 112.2 13.1 147 205-360 62-217 (230)
57 PRK15001 SAM-dependent 23S rib 99.4 1.2E-11 2.6E-16 116.1 14.9 107 196-303 219-340 (378)
58 COG2227 UbiG 2-polyprenyl-3-me 99.4 8.3E-13 1.8E-17 113.6 5.9 144 206-358 59-216 (243)
59 PF05891 Methyltransf_PK: AdoM 99.3 2.3E-12 4.9E-17 109.8 7.6 136 206-356 55-200 (218)
60 TIGR00138 gidB 16S rRNA methyl 99.3 1.2E-11 2.5E-16 105.3 11.6 91 207-303 43-142 (181)
61 PRK05134 bifunctional 3-demeth 99.3 1.5E-11 3.2E-16 109.4 12.8 145 205-357 47-205 (233)
62 PLN03075 nicotianamine synthas 99.3 7.5E-12 1.6E-16 112.8 10.2 98 205-303 122-233 (296)
63 PLN02585 magnesium protoporphy 99.3 1.2E-11 2.5E-16 113.8 11.5 141 206-360 144-302 (315)
64 TIGR03840 TMPT_Se_Te thiopurin 99.3 6E-11 1.3E-15 103.5 15.1 132 205-357 33-187 (213)
65 PRK09489 rsmC 16S ribosomal RN 99.3 5.9E-11 1.3E-15 110.8 16.0 108 196-304 187-304 (342)
66 PRK00107 gidB 16S rRNA methylt 99.3 1.1E-10 2.4E-15 99.6 15.5 93 206-304 45-146 (187)
67 PF05401 NodS: Nodulation prot 99.3 5.4E-12 1.2E-16 105.7 6.4 135 200-358 38-180 (201)
68 TIGR03438 probable methyltrans 99.3 2.6E-11 5.7E-16 111.7 10.3 105 195-302 55-176 (301)
69 PTZ00146 fibrillarin; Provisio 99.3 3.7E-10 7.9E-15 101.6 17.1 132 204-359 130-273 (293)
70 TIGR01983 UbiG ubiquinone bios 99.3 2.9E-11 6.2E-16 106.9 9.7 142 206-357 45-203 (224)
71 TIGR03534 RF_mod_PrmC protein- 99.2 1.2E-10 2.7E-15 104.7 13.3 124 206-359 87-243 (251)
72 TIGR02469 CbiT precorrin-6Y C5 99.2 1E-10 2.2E-15 93.1 10.9 100 197-302 11-121 (124)
73 TIGR02081 metW methionine bios 99.2 1.2E-10 2.6E-15 100.6 11.6 150 195-359 5-169 (194)
74 PF07021 MetW: Methionine bios 99.2 1.8E-10 3.9E-15 96.4 11.8 145 205-361 12-171 (193)
75 PLN02232 ubiquinone biosynthes 99.2 8.3E-11 1.8E-15 98.2 9.7 128 234-363 1-153 (160)
76 PF05175 MTS: Methyltransferas 99.2 4.3E-11 9.3E-16 101.0 8.1 99 206-304 31-141 (170)
77 COG2813 RsmC 16S RNA G1207 met 99.2 6E-10 1.3E-14 99.7 15.3 109 195-304 148-267 (300)
78 PRK13255 thiopurine S-methyltr 99.2 5.9E-10 1.3E-14 97.6 14.8 130 205-357 36-190 (218)
79 PF05148 Methyltransf_8: Hypot 99.2 3.8E-10 8.3E-15 95.3 12.8 159 170-369 32-197 (219)
80 PRK00121 trmB tRNA (guanine-N( 99.2 5.1E-11 1.1E-15 103.4 7.9 107 196-304 32-157 (202)
81 PF03848 TehB: Tellurite resis 99.2 7.2E-11 1.6E-15 100.1 8.5 140 195-355 20-167 (192)
82 PRK11188 rrmJ 23S rRNA methylt 99.2 3.9E-10 8.4E-15 98.3 13.1 108 194-305 39-167 (209)
83 PF12147 Methyltransf_20: Puta 99.2 2.6E-09 5.7E-14 94.4 17.9 155 205-369 134-311 (311)
84 PRK00517 prmA ribosomal protei 99.2 3.8E-10 8.2E-15 101.4 13.1 123 206-368 119-249 (250)
85 PRK14968 putative methyltransf 99.2 9.1E-10 2E-14 94.4 14.7 133 206-369 23-188 (188)
86 PRK09328 N5-glutamine S-adenos 99.2 9.3E-10 2E-14 100.4 15.5 135 204-368 106-274 (275)
87 COG4123 Predicted O-methyltran 99.1 1.1E-09 2.4E-14 96.0 12.2 126 204-359 42-196 (248)
88 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.8E-10 3.8E-15 99.4 7.0 98 206-304 16-133 (194)
89 PRK11088 rrmA 23S rRNA methylt 99.1 4.8E-10 1E-14 102.0 10.2 91 206-305 85-183 (272)
90 TIGR00536 hemK_fam HemK family 99.1 3.4E-09 7.3E-14 97.0 15.5 94 208-301 116-242 (284)
91 COG2242 CobL Precorrin-6B meth 99.1 1.6E-09 3.5E-14 90.2 12.0 101 198-305 27-137 (187)
92 PRK13944 protein-L-isoaspartat 99.1 7.6E-10 1.7E-14 96.3 10.3 99 196-303 63-173 (205)
93 PRK14966 unknown domain/N5-glu 99.0 5.4E-09 1.2E-13 98.6 15.2 132 206-367 251-416 (423)
94 PHA03411 putative methyltransf 99.0 3.2E-09 6.8E-14 94.5 11.8 123 206-351 64-208 (279)
95 PRK13942 protein-L-isoaspartat 99.0 2.2E-09 4.7E-14 93.9 10.4 100 195-303 66-176 (212)
96 TIGR03533 L3_gln_methyl protei 99.0 1.5E-09 3.2E-14 99.2 9.4 96 206-301 121-249 (284)
97 TIGR00080 pimt protein-L-isoas 99.0 2.6E-09 5.7E-14 93.7 10.4 99 195-302 67-176 (215)
98 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.3E-09 5E-14 100.4 10.5 107 196-304 113-236 (390)
99 PRK14967 putative methyltransf 99.0 1.2E-08 2.5E-13 90.2 14.5 102 204-306 34-162 (223)
100 PRK00377 cbiT cobalt-precorrin 99.0 6.5E-09 1.4E-13 90.0 12.3 96 200-301 35-143 (198)
101 PRK07402 precorrin-6B methylas 99.0 2.6E-09 5.6E-14 92.4 9.7 101 197-304 32-143 (196)
102 TIGR00406 prmA ribosomal prote 99.0 2.9E-09 6.2E-14 97.6 10.3 94 206-305 159-261 (288)
103 KOG3045 Predicted RNA methylas 99.0 1.6E-08 3.5E-13 87.4 14.0 158 169-369 139-303 (325)
104 PRK04457 spermidine synthase; 99.0 1.7E-09 3.7E-14 97.5 8.2 98 205-303 65-177 (262)
105 KOG1271 Methyltransferases [Ge 99.0 3.6E-09 7.9E-14 86.7 9.1 124 206-359 67-207 (227)
106 PRK11805 N5-glutamine S-adenos 99.0 2.4E-09 5.2E-14 98.7 9.1 94 208-301 135-261 (307)
107 PF04672 Methyltransf_19: S-ad 99.0 2.7E-09 5.8E-14 94.4 8.7 141 206-354 68-233 (267)
108 TIGR03704 PrmC_rel_meth putati 99.0 2.5E-08 5.3E-13 89.5 15.1 97 206-302 86-215 (251)
109 PRK01544 bifunctional N5-gluta 98.9 1.3E-08 2.9E-13 100.1 13.9 123 207-359 139-295 (506)
110 cd02440 AdoMet_MTases S-adenos 98.9 6.6E-09 1.4E-13 79.0 9.2 92 209-302 1-103 (107)
111 TIGR00438 rrmJ cell division p 98.9 1.1E-08 2.3E-13 87.9 11.0 103 197-303 23-146 (188)
112 COG2264 PrmA Ribosomal protein 98.9 2.5E-08 5.5E-13 89.9 11.8 147 181-365 140-296 (300)
113 PRK13256 thiopurine S-methyltr 98.9 4.1E-08 9E-13 85.7 12.8 100 205-306 42-166 (226)
114 PF13659 Methyltransf_26: Meth 98.9 2.1E-09 4.6E-14 84.7 4.2 95 208-303 2-115 (117)
115 PF06325 PrmA: Ribosomal prote 98.8 8.5E-09 1.8E-13 93.8 8.3 147 181-369 139-295 (295)
116 KOG2899 Predicted methyltransf 98.8 1.3E-08 2.8E-13 87.3 8.4 143 204-354 56-254 (288)
117 TIGR01177 conserved hypothetic 98.8 4.9E-08 1.1E-12 91.3 12.9 120 204-358 180-316 (329)
118 COG4976 Predicted methyltransf 98.8 1E-08 2.2E-13 87.2 7.2 145 196-359 116-267 (287)
119 COG2890 HemK Methylase of poly 98.8 1.3E-07 2.9E-12 85.9 14.9 122 209-360 113-266 (280)
120 PRK00811 spermidine synthase; 98.8 1.5E-08 3.3E-13 92.4 8.7 98 205-302 75-190 (283)
121 PRK00312 pcm protein-L-isoaspa 98.8 3E-08 6.6E-13 86.8 10.1 98 196-304 69-176 (212)
122 PF01739 CheR: CheR methyltran 98.8 1.5E-08 3.2E-13 86.9 7.8 99 206-304 31-176 (196)
123 PF08100 Dimerisation: Dimeris 98.8 8.5E-09 1.8E-13 67.4 4.2 51 42-93 1-51 (51)
124 PF05724 TPMT: Thiopurine S-me 98.8 6.8E-08 1.5E-12 84.4 11.0 131 204-357 35-190 (218)
125 PRK10611 chemotaxis methyltran 98.8 2E-07 4.3E-12 84.5 14.2 98 206-303 115-262 (287)
126 PRK01581 speE spermidine synth 98.7 4.8E-08 1E-12 90.4 9.6 99 205-303 149-268 (374)
127 PF05219 DREV: DREV methyltran 98.7 9.9E-08 2.2E-12 83.6 11.0 141 206-359 94-242 (265)
128 PLN02366 spermidine synthase 98.7 5.7E-08 1.2E-12 89.3 9.0 99 205-303 90-206 (308)
129 PRK03612 spermidine synthase; 98.7 1.4E-07 3E-12 93.4 12.1 98 205-303 296-415 (521)
130 TIGR00417 speE spermidine synt 98.7 7.9E-08 1.7E-12 87.3 8.3 98 205-302 71-185 (270)
131 PRK13943 protein-L-isoaspartat 98.6 1.1E-07 2.3E-12 88.0 8.9 99 196-303 71-180 (322)
132 COG1352 CheR Methylase of chem 98.6 1.5E-06 3.3E-11 77.8 15.8 99 206-304 96-242 (268)
133 COG2518 Pcm Protein-L-isoaspar 98.6 2.3E-07 5E-12 79.1 9.9 100 194-304 61-170 (209)
134 PLN02781 Probable caffeoyl-CoA 98.6 4E-07 8.8E-12 80.8 11.4 97 204-305 66-180 (234)
135 COG2519 GCD14 tRNA(1-methylade 98.6 3.7E-07 8.1E-12 79.6 10.7 106 194-307 83-199 (256)
136 KOG3010 Methyltransferase [Gen 98.6 1.5E-07 3.3E-12 80.9 7.7 94 206-304 33-137 (261)
137 smart00650 rADc Ribosomal RNA 98.6 1.7E-07 3.8E-12 79.0 7.9 104 195-304 3-114 (169)
138 PF01135 PCMT: Protein-L-isoas 98.5 9.3E-08 2E-12 82.9 5.2 102 194-304 61-173 (209)
139 PHA03412 putative methyltransf 98.5 5.5E-07 1.2E-11 78.5 9.5 94 207-301 50-160 (241)
140 PLN02672 methionine S-methyltr 98.5 9.5E-07 2.1E-11 92.8 12.9 123 207-359 119-305 (1082)
141 PF03291 Pox_MCEL: mRNA cappin 98.5 3.3E-07 7.2E-12 85.1 7.8 98 206-304 62-187 (331)
142 PRK10901 16S rRNA methyltransf 98.5 9E-07 2E-11 85.7 10.5 103 204-306 242-375 (427)
143 TIGR00563 rsmB ribosomal RNA s 98.5 1.1E-06 2.3E-11 85.3 10.9 109 199-308 232-373 (426)
144 PF02390 Methyltransf_4: Putat 98.5 2.8E-07 6.1E-12 79.3 5.9 96 208-304 19-134 (195)
145 KOG1541 Predicted protein carb 98.4 6E-07 1.3E-11 76.1 6.9 94 206-302 50-159 (270)
146 PRK14902 16S rRNA methyltransf 98.4 1.3E-06 2.9E-11 85.1 10.3 103 204-306 248-382 (444)
147 PF11968 DUF3321: Putative met 98.4 5.6E-06 1.2E-10 70.7 12.2 120 207-359 52-183 (219)
148 COG3963 Phospholipid N-methylt 98.4 1.8E-06 3.9E-11 70.1 8.3 111 194-305 37-158 (194)
149 PRK14901 16S rRNA methyltransf 98.4 1.8E-06 3.8E-11 83.9 9.8 103 204-306 250-387 (434)
150 PRK14904 16S rRNA methyltransf 98.4 3E-06 6.4E-11 82.6 11.1 104 204-307 248-381 (445)
151 PF05185 PRMT5: PRMT5 arginine 98.4 8.6E-07 1.9E-11 85.6 7.0 127 167-300 151-294 (448)
152 PF08123 DOT1: Histone methyla 98.3 1.4E-06 2.9E-11 75.3 6.9 111 195-309 32-164 (205)
153 KOG1975 mRNA cap methyltransfe 98.3 1.7E-06 3.7E-11 77.5 6.8 104 196-302 109-236 (389)
154 COG0220 Predicted S-adenosylme 98.3 3.2E-06 7E-11 74.0 8.3 96 207-303 49-164 (227)
155 PF08704 GCD14: tRNA methyltra 98.3 2E-06 4.4E-11 76.2 6.6 105 194-306 29-149 (247)
156 PRK14903 16S rRNA methyltransf 98.2 6.1E-06 1.3E-10 79.9 10.1 104 204-307 235-370 (431)
157 COG0421 SpeE Spermidine syntha 98.2 4E-06 8.8E-11 75.8 8.0 97 205-302 75-189 (282)
158 TIGR00446 nop2p NOL1/NOP2/sun 98.2 1.1E-05 2.3E-10 73.1 10.3 103 204-306 69-202 (264)
159 TIGR00755 ksgA dimethyladenosi 98.2 5.7E-06 1.2E-10 74.5 8.1 91 194-291 18-116 (253)
160 TIGR03439 methyl_EasF probable 98.2 9.4E-06 2E-10 74.9 9.5 106 194-302 67-196 (319)
161 COG4122 Predicted O-methyltran 98.2 5.6E-06 1.2E-10 71.7 7.5 99 204-307 57-170 (219)
162 PF10294 Methyltransf_16: Puta 98.2 3.5E-06 7.7E-11 71.2 6.2 100 205-306 44-159 (173)
163 PF09243 Rsm22: Mitochondrial 98.2 8.8E-06 1.9E-10 73.9 8.9 112 194-308 22-144 (274)
164 PLN02476 O-methyltransferase 98.2 7.8E-06 1.7E-10 73.7 8.4 98 204-306 116-231 (278)
165 PRK11727 23S rRNA mA1618 methy 98.2 1.1E-05 2.3E-10 74.5 9.5 145 206-359 114-294 (321)
166 PF01596 Methyltransf_3: O-met 98.2 1.9E-06 4.2E-11 74.5 4.4 97 205-306 44-158 (205)
167 PLN02823 spermine synthase 98.2 6.8E-06 1.5E-10 76.4 8.2 96 206-302 103-219 (336)
168 KOG1331 Predicted methyltransf 98.1 3.8E-06 8.3E-11 74.3 5.8 104 195-305 37-145 (293)
169 KOG1500 Protein arginine N-met 98.1 9.4E-06 2E-10 73.0 7.9 93 207-300 178-279 (517)
170 PRK00274 ksgA 16S ribosomal RN 98.1 9.1E-06 2E-10 73.9 7.8 80 195-278 32-118 (272)
171 KOG2940 Predicted methyltransf 98.1 3.9E-05 8.5E-10 65.6 10.7 141 205-355 71-225 (325)
172 PRK14896 ksgA 16S ribosomal RN 98.1 1.5E-05 3.2E-10 72.0 8.8 81 194-278 18-104 (258)
173 PRK10909 rsmD 16S rRNA m(2)G96 98.1 9E-06 2E-10 70.0 7.0 95 206-304 53-160 (199)
174 PRK00536 speE spermidine synth 98.1 1.5E-05 3.2E-10 71.4 8.2 90 205-304 71-172 (262)
175 PRK15128 23S rRNA m(5)C1962 me 98.0 2.2E-05 4.9E-10 74.9 9.3 98 206-304 220-340 (396)
176 TIGR00478 tly hemolysin TlyA f 98.0 9.5E-05 2.1E-09 65.0 12.4 148 191-359 60-219 (228)
177 PF03141 Methyltransf_29: Puta 98.0 8.4E-06 1.8E-10 77.7 5.8 98 206-307 117-223 (506)
178 PRK11783 rlmL 23S rRNA m(2)G24 98.0 1.9E-05 4.1E-10 81.1 8.9 96 206-302 538-655 (702)
179 KOG3191 Predicted N6-DNA-methy 98.0 0.00015 3.2E-09 60.0 11.8 133 207-368 44-207 (209)
180 KOG2904 Predicted methyltransf 98.0 5.8E-05 1.2E-09 66.4 9.7 97 205-301 147-283 (328)
181 PF01564 Spermine_synth: Sperm 98.0 7.6E-06 1.7E-10 73.1 4.4 100 205-304 75-192 (246)
182 PTZ00338 dimethyladenosine tra 97.9 3.8E-05 8.2E-10 70.4 8.7 89 194-286 25-122 (294)
183 PRK13168 rumA 23S rRNA m(5)U19 97.9 2.5E-05 5.4E-10 76.1 7.9 101 194-303 286-400 (443)
184 PLN02589 caffeoyl-CoA O-methyl 97.9 2.4E-05 5.3E-10 69.6 7.0 96 205-306 78-192 (247)
185 PRK01544 bifunctional N5-gluta 97.9 2.3E-05 4.9E-10 77.4 7.1 97 206-303 347-462 (506)
186 COG4798 Predicted methyltransf 97.9 0.00016 3.5E-09 60.4 10.1 138 203-355 45-203 (238)
187 PRK04148 hypothetical protein; 97.9 0.00013 2.9E-09 58.0 9.4 101 196-307 7-113 (134)
188 KOG1499 Protein arginine N-met 97.9 2.2E-05 4.7E-10 71.7 5.3 94 206-300 60-164 (346)
189 COG2521 Predicted archaeal met 97.8 0.00029 6.4E-09 60.6 10.3 133 204-359 132-279 (287)
190 PF01728 FtsJ: FtsJ-like methy 97.7 3.2E-05 7E-10 65.8 4.5 110 192-305 7-141 (181)
191 KOG1661 Protein-L-isoaspartate 97.7 6.9E-05 1.5E-09 63.4 6.2 92 204-303 80-193 (237)
192 PF02527 GidB: rRNA small subu 97.7 5.3E-05 1.2E-09 64.3 5.7 90 209-304 51-149 (184)
193 COG0293 FtsJ 23S rRNA methylas 97.7 0.00025 5.5E-09 60.6 9.5 116 186-305 25-161 (205)
194 COG2263 Predicted RNA methylas 97.7 0.0001 2.3E-09 61.5 6.8 116 206-355 45-166 (198)
195 COG0030 KsgA Dimethyladenosine 97.7 0.00025 5.5E-09 63.0 9.7 94 194-288 19-118 (259)
196 PF07942 N2227: N2227-like pro 97.7 0.0022 4.7E-08 57.6 15.7 136 206-357 56-242 (270)
197 TIGR00479 rumA 23S rRNA (uraci 97.7 0.00015 3.2E-09 70.6 9.0 98 196-301 283-394 (431)
198 PF04816 DUF633: Family of unk 97.7 0.00021 4.5E-09 61.8 8.8 124 210-368 1-138 (205)
199 PRK11760 putative 23S rRNA C24 97.7 0.0028 6.1E-08 58.4 16.1 97 205-309 210-310 (357)
200 TIGR00027 mthyl_TIGR00027 meth 97.7 0.0011 2.4E-08 59.7 13.1 147 205-355 80-248 (260)
201 PRK03522 rumB 23S rRNA methylu 97.7 0.00011 2.5E-09 68.3 6.9 88 207-301 174-272 (315)
202 KOG3115 Methyltransferase-like 97.7 5.6E-05 1.2E-09 63.5 4.3 100 206-305 60-185 (249)
203 COG5459 Predicted rRNA methyla 97.6 7.3E-05 1.6E-09 67.9 4.1 113 195-308 103-230 (484)
204 TIGR00095 RNA methyltransferas 97.6 0.00014 3E-09 62.3 5.7 93 207-304 50-159 (189)
205 COG0357 GidB Predicted S-adeno 97.5 0.00024 5.2E-09 61.5 6.6 120 207-359 68-197 (215)
206 KOG0820 Ribosomal RNA adenine 97.5 0.00025 5.4E-09 62.4 6.6 77 193-270 46-129 (315)
207 PRK00050 16S rRNA m(4)C1402 me 97.4 0.0003 6.6E-09 64.1 6.4 66 194-260 8-79 (296)
208 TIGR02085 meth_trns_rumB 23S r 97.4 0.00046 9.9E-09 65.7 7.5 90 207-303 234-334 (374)
209 KOG1709 Guanidinoacetate methy 97.3 0.0018 4E-08 55.1 9.2 102 205-308 100-211 (271)
210 COG4076 Predicted RNA methylas 97.3 0.0004 8.6E-09 57.7 4.9 96 208-305 34-137 (252)
211 KOG3987 Uncharacterized conser 97.3 0.00032 6.9E-09 59.2 4.3 140 206-359 112-262 (288)
212 COG1889 NOP1 Fibrillarin-like 97.3 0.013 2.8E-07 49.7 13.5 142 201-367 72-227 (231)
213 COG3315 O-Methyltransferase in 97.3 0.001 2.2E-08 61.0 7.8 168 186-356 74-263 (297)
214 KOG2798 Putative trehalase [Ca 97.2 0.0065 1.4E-07 54.8 12.2 152 192-358 133-338 (369)
215 PF01269 Fibrillarin: Fibrilla 97.1 0.0054 1.2E-07 53.0 10.4 130 204-359 71-214 (229)
216 PF13679 Methyltransf_32: Meth 97.1 0.0022 4.7E-08 52.2 7.4 96 204-306 23-134 (141)
217 COG4262 Predicted spermidine s 97.1 0.002 4.3E-08 59.2 7.6 96 205-306 288-410 (508)
218 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0022 4.8E-08 58.0 8.0 95 194-295 19-123 (262)
219 COG0500 SmtA SAM-dependent met 97.1 0.0047 1E-07 50.2 9.5 95 210-308 52-160 (257)
220 PRK04338 N(2),N(2)-dimethylgua 96.9 0.0022 4.7E-08 61.1 7.0 90 207-302 58-157 (382)
221 PF09339 HTH_IclR: IclR helix- 96.9 0.00033 7.1E-09 46.3 0.8 46 50-101 6-51 (52)
222 PF04989 CmcI: Cephalosporin h 96.8 0.0052 1.1E-07 52.7 7.5 99 206-306 32-150 (206)
223 PLN02668 indole-3-acetate carb 96.8 0.065 1.4E-06 50.8 15.1 102 206-307 63-241 (386)
224 KOG1269 SAM-dependent methyltr 96.7 0.0014 2.9E-08 61.7 3.8 101 206-309 110-221 (364)
225 COG4627 Uncharacterized protei 96.7 0.0035 7.5E-08 50.6 5.4 44 261-304 42-87 (185)
226 COG4301 Uncharacterized conser 96.7 0.0073 1.6E-07 52.6 7.7 97 206-302 78-192 (321)
227 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.7 0.003 6.6E-08 56.3 5.5 87 252-357 137-239 (256)
228 PF01170 UPF0020: Putative RNA 96.7 0.0044 9.6E-08 52.6 6.2 98 204-301 26-149 (179)
229 COG3897 Predicted methyltransf 96.6 0.015 3.2E-07 49.1 8.8 110 197-309 70-185 (218)
230 COG1189 Predicted rRNA methyla 96.6 0.032 6.9E-07 48.7 11.1 152 193-359 66-226 (245)
231 PRK05031 tRNA (uracil-5-)-meth 96.6 0.0037 7.9E-08 59.3 5.9 51 208-260 208-265 (362)
232 PF13578 Methyltransf_24: Meth 96.6 0.00055 1.2E-08 52.6 0.1 90 211-303 1-105 (106)
233 PF01022 HTH_5: Bacterial regu 96.6 0.0012 2.6E-08 42.6 1.6 43 49-99 4-46 (47)
234 PRK11933 yebU rRNA (cytosine-C 96.6 0.011 2.3E-07 57.8 8.9 100 204-303 111-242 (470)
235 PF11312 DUF3115: Protein of u 96.6 0.0099 2.1E-07 54.0 7.9 101 207-307 87-246 (315)
236 KOG4589 Cell division protein 96.6 0.014 3E-07 48.8 8.1 110 192-306 55-187 (232)
237 smart00550 Zalpha Z-DNA-bindin 96.5 0.0052 1.1E-07 43.1 4.8 60 47-116 6-66 (68)
238 PRK10141 DNA-binding transcrip 96.5 0.0034 7.3E-08 49.0 4.0 69 39-117 8-76 (117)
239 smart00346 HTH_ICLR helix_turn 96.5 0.0039 8.5E-08 46.3 4.3 59 49-118 7-65 (91)
240 PF02475 Met_10: Met-10+ like- 96.4 0.0014 3E-08 56.4 1.6 89 205-299 100-198 (200)
241 PF12840 HTH_20: Helix-turn-he 96.4 0.0026 5.7E-08 43.5 2.7 54 41-101 4-57 (61)
242 COG2384 Predicted SAM-dependen 96.4 0.097 2.1E-06 45.2 12.4 92 206-301 16-118 (226)
243 KOG3201 Uncharacterized conser 96.3 0.0019 4.1E-08 52.5 1.8 97 207-305 30-142 (201)
244 TIGR02987 met_A_Alw26 type II 96.3 0.012 2.7E-07 58.7 7.9 66 206-271 31-119 (524)
245 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.0083 1.8E-07 55.7 6.0 101 204-304 44-184 (311)
246 TIGR01444 fkbM_fam methyltrans 96.3 0.0041 8.9E-08 50.5 3.5 52 209-260 1-59 (143)
247 KOG3420 Predicted RNA methylas 96.3 0.0047 1E-07 49.3 3.6 68 206-274 48-124 (185)
248 PHA00738 putative HTH transcri 96.3 0.0061 1.3E-07 46.1 4.0 62 48-119 13-74 (108)
249 PF03059 NAS: Nicotianamine sy 96.2 0.013 2.8E-07 52.8 6.8 96 206-302 120-229 (276)
250 KOG1663 O-methyltransferase [S 96.2 0.025 5.4E-07 49.0 8.1 98 206-308 73-188 (237)
251 KOG2918 Carboxymethyl transfer 96.2 0.092 2E-06 47.6 11.6 149 195-358 79-278 (335)
252 PF13601 HTH_34: Winged helix 96.1 0.0041 8.8E-08 45.2 2.3 68 48-122 1-69 (80)
253 TIGR02143 trmA_only tRNA (urac 96.1 0.0051 1.1E-07 58.1 3.5 51 208-260 199-256 (353)
254 PF13463 HTH_27: Winged helix 96.0 0.0075 1.6E-07 42.0 3.5 63 49-118 5-68 (68)
255 PF03141 Methyltransf_29: Puta 96.0 0.022 4.7E-07 55.0 7.4 99 204-305 363-469 (506)
256 COG1414 IclR Transcriptional r 96.0 0.0076 1.6E-07 53.9 4.2 60 50-120 7-66 (246)
257 PF04072 LCM: Leucine carboxyl 96.0 0.02 4.3E-07 48.8 6.5 84 206-289 78-182 (183)
258 KOG0822 Protein kinase inhibit 95.9 0.05 1.1E-06 52.6 9.2 127 167-300 333-475 (649)
259 PRK11783 rlmL 23S rRNA m(2)G24 95.8 0.048 1E-06 56.4 9.6 111 193-304 177-348 (702)
260 PF13412 HTH_24: Winged helix- 95.8 0.01 2.2E-07 38.3 3.0 45 48-99 4-48 (48)
261 PF14947 HTH_45: Winged helix- 95.8 0.0097 2.1E-07 42.8 3.1 57 52-123 11-67 (77)
262 PRK11569 transcriptional repre 95.8 0.011 2.5E-07 53.7 4.3 59 50-119 31-89 (274)
263 PF07757 AdoMet_MTase: Predict 95.8 0.015 3.2E-07 44.1 4.0 43 193-238 46-88 (112)
264 PRK10163 DNA-binding transcrip 95.7 0.013 2.8E-07 53.3 4.3 59 50-119 28-86 (271)
265 PF09445 Methyltransf_15: RNA 95.7 0.0045 9.7E-08 51.3 1.2 63 208-272 1-77 (163)
266 PF03602 Cons_hypoth95: Conser 95.6 0.0072 1.6E-07 51.4 2.2 96 206-305 42-154 (183)
267 TIGR02431 pcaR_pcaU beta-ketoa 95.6 0.013 2.7E-07 52.6 3.9 58 50-120 12-69 (248)
268 PF02082 Rrf2: Transcriptional 95.6 0.019 4E-07 42.0 4.1 50 63-120 24-73 (83)
269 PRK15090 DNA-binding transcrip 95.6 0.013 2.9E-07 52.8 4.0 59 50-120 17-75 (257)
270 PF01978 TrmB: Sugar-specific 95.6 0.0045 9.8E-08 43.4 0.7 47 48-101 9-55 (68)
271 COG1041 Predicted DNA modifica 95.5 0.16 3.5E-06 47.1 10.7 99 204-304 195-311 (347)
272 KOG2915 tRNA(1-methyladenosine 95.4 0.18 3.8E-06 45.0 10.0 106 193-306 93-213 (314)
273 TIGR00308 TRM1 tRNA(guanine-26 95.3 0.093 2E-06 49.8 8.8 92 207-304 45-148 (374)
274 TIGR02337 HpaR homoprotocatech 95.3 0.031 6.7E-07 43.8 4.8 70 47-123 28-97 (118)
275 PRK09834 DNA-binding transcrip 95.3 0.022 4.7E-07 51.6 4.3 62 49-121 13-74 (263)
276 KOG1562 Spermidine synthase [A 95.2 0.034 7.3E-07 50.0 5.1 102 204-306 119-239 (337)
277 smart00347 HTH_MARR helix_turn 95.2 0.038 8.3E-07 41.5 4.7 69 48-123 11-79 (101)
278 PF09012 FeoC: FeoC like trans 95.1 0.021 4.6E-07 40.1 3.0 43 52-101 5-47 (69)
279 COG3355 Predicted transcriptio 95.0 0.038 8.2E-07 43.4 4.1 49 48-103 28-77 (126)
280 PF03492 Methyltransf_7: SAM d 94.8 0.28 6.1E-06 45.9 10.4 105 204-308 14-188 (334)
281 smart00419 HTH_CRP helix_turn_ 94.8 0.034 7.4E-07 35.5 3.1 34 64-101 8-41 (48)
282 PF07091 FmrO: Ribosomal RNA m 94.7 0.022 4.7E-07 50.2 2.5 99 205-305 104-210 (251)
283 PF04703 FaeA: FaeA-like prote 94.7 0.046 1E-06 37.3 3.5 45 51-101 4-48 (62)
284 COG2520 Predicted methyltransf 94.7 0.24 5.2E-06 46.2 9.3 96 206-308 188-294 (341)
285 COG1959 Predicted transcriptio 94.6 0.051 1.1E-06 44.6 4.4 60 53-120 14-73 (150)
286 cd00092 HTH_CRP helix_turn_hel 94.6 0.048 1E-06 37.7 3.6 44 63-116 24-67 (67)
287 COG2345 Predicted transcriptio 94.6 0.055 1.2E-06 46.9 4.6 66 51-123 15-82 (218)
288 TIGR00006 S-adenosyl-methyltra 94.6 0.09 2E-06 48.2 6.2 66 194-260 9-80 (305)
289 COG1092 Predicted SAM-dependen 94.5 0.077 1.7E-06 50.5 5.7 99 206-305 217-338 (393)
290 COG4742 Predicted transcriptio 94.4 0.066 1.4E-06 47.6 4.7 67 42-123 8-74 (260)
291 PF04967 HTH_10: HTH DNA bindi 94.2 0.048 1E-06 35.9 2.7 43 40-92 5-47 (53)
292 KOG2793 Putative N2,N2-dimethy 94.1 0.26 5.6E-06 43.8 7.8 97 206-305 86-201 (248)
293 KOG1099 SAM-dependent methyltr 94.1 0.097 2.1E-06 45.3 4.9 101 197-301 32-161 (294)
294 PF01638 HxlR: HxlR-like helix 94.0 0.055 1.2E-06 40.2 3.1 64 52-123 10-74 (90)
295 PF01795 Methyltransf_5: MraW 94.0 0.1 2.3E-06 47.9 5.4 66 194-260 9-80 (310)
296 PRK03902 manganese transport t 94.0 0.09 2E-06 42.7 4.5 50 63-122 21-70 (142)
297 TIGR02702 SufR_cyano iron-sulf 93.9 0.089 1.9E-06 45.6 4.7 67 50-123 4-72 (203)
298 TIGR00738 rrf2_super rrf2 fami 93.8 0.089 1.9E-06 42.0 4.2 49 63-119 24-72 (132)
299 PF12802 MarR_2: MarR family; 93.8 0.046 9.9E-07 37.2 2.1 49 48-101 6-54 (62)
300 PRK11050 manganese transport r 93.7 0.43 9.4E-06 39.2 8.2 79 26-122 21-99 (152)
301 KOG3924 Putative protein methy 93.7 0.11 2.5E-06 48.5 5.1 109 196-308 183-313 (419)
302 TIGR02010 IscR iron-sulfur clu 93.7 0.096 2.1E-06 42.1 4.1 49 63-119 24-72 (135)
303 PRK11512 DNA-binding transcrip 93.7 0.11 2.3E-06 42.4 4.4 69 48-123 41-109 (144)
304 COG0742 N6-adenine-specific me 93.5 0.24 5.1E-06 41.9 6.3 97 206-303 43-154 (187)
305 KOG2352 Predicted spermine/spe 93.5 0.42 9.1E-06 46.2 8.6 103 208-311 50-171 (482)
306 PRK10857 DNA-binding transcrip 93.4 0.13 2.8E-06 42.9 4.5 49 63-119 24-72 (164)
307 PRK03573 transcriptional regul 93.3 0.64 1.4E-05 37.7 8.5 68 50-123 34-101 (144)
308 KOG4058 Uncharacterized conser 93.3 0.27 6E-06 39.5 5.9 105 195-308 62-177 (199)
309 PF01047 MarR: MarR family; I 93.2 0.055 1.2E-06 36.4 1.7 47 48-101 4-50 (59)
310 TIGR02944 suf_reg_Xantho FeS a 93.2 0.11 2.4E-06 41.5 3.8 46 63-116 24-69 (130)
311 TIGR01889 Staph_reg_Sar staphy 93.1 0.14 3.1E-06 39.4 4.2 71 47-122 25-97 (109)
312 PF08220 HTH_DeoR: DeoR-like h 93.1 0.15 3.2E-06 34.3 3.6 44 51-101 4-47 (57)
313 COG4189 Predicted transcriptio 93.1 0.17 3.7E-06 43.7 4.8 55 40-101 16-70 (308)
314 KOG2187 tRNA uracil-5-methyltr 92.8 0.12 2.5E-06 50.2 3.8 55 204-260 381-442 (534)
315 PF06859 Bin3: Bicoid-interact 92.6 0.047 1E-06 41.7 0.7 86 266-359 3-94 (110)
316 smart00420 HTH_DEOR helix_turn 92.6 0.19 4.1E-06 32.6 3.6 43 52-101 5-47 (53)
317 COG1321 TroR Mn-dependent tran 92.5 0.21 4.6E-06 41.1 4.6 51 63-123 23-73 (154)
318 smart00418 HTH_ARSR helix_turn 92.4 0.23 5.1E-06 33.5 4.1 42 52-101 2-43 (66)
319 cd00090 HTH_ARSR Arsenical Res 92.3 0.21 4.5E-06 35.0 3.9 57 49-116 9-65 (78)
320 TIGR00122 birA_repr_reg BirA b 92.2 0.18 4E-06 35.2 3.4 44 49-100 2-45 (69)
321 TIGR01884 cas_HTH CRISPR locus 92.1 0.22 4.7E-06 43.1 4.4 59 48-117 144-202 (203)
322 PF10354 DUF2431: Domain of un 92.0 2.5 5.4E-05 35.3 10.4 121 212-359 2-154 (166)
323 PF01726 LexA_DNA_bind: LexA D 91.6 0.2 4.3E-06 34.6 2.9 36 63-101 24-59 (65)
324 PRK06266 transcription initiat 91.6 0.37 8.1E-06 40.7 5.1 44 50-100 25-68 (178)
325 PF07381 DUF1495: Winged helix 91.4 0.36 7.8E-06 35.6 4.2 69 46-122 8-87 (90)
326 PF01861 DUF43: Protein of unk 91.3 4.6 9.9E-05 35.7 11.6 95 206-304 44-149 (243)
327 PRK11920 rirA iron-responsive 91.2 0.25 5.4E-06 40.7 3.6 49 63-119 23-71 (153)
328 smart00344 HTH_ASNC helix_turn 91.2 0.26 5.7E-06 37.7 3.5 46 48-100 4-49 (108)
329 PF08461 HTH_12: Ribonuclease 91.1 0.36 7.9E-06 33.5 3.8 59 52-119 3-63 (66)
330 PRK06474 hypothetical protein; 91.1 0.35 7.6E-06 40.9 4.5 74 41-120 5-81 (178)
331 PF10672 Methyltrans_SAM: S-ad 91.0 0.23 5.1E-06 45.2 3.6 98 206-304 123-239 (286)
332 COG0144 Sun tRNA and rRNA cyto 91.0 2.2 4.9E-05 40.3 10.3 103 204-306 154-291 (355)
333 COG2265 TrmA SAM-dependent met 90.7 0.36 7.8E-06 46.8 4.7 99 195-302 283-395 (432)
334 PF11899 DUF3419: Protein of u 90.7 0.48 1E-05 45.1 5.5 60 249-308 275-339 (380)
335 PF10007 DUF2250: Uncharacteri 90.5 0.43 9.3E-06 35.4 3.9 47 48-101 8-54 (92)
336 COG0116 Predicted N6-adenine-s 90.4 2.1 4.6E-05 40.4 9.3 101 203-303 188-344 (381)
337 COG1064 AdhP Zn-dependent alco 90.3 1.1 2.5E-05 41.7 7.4 93 204-306 164-262 (339)
338 smart00345 HTH_GNTR helix_turn 90.1 0.48 1E-05 31.5 3.7 34 64-101 19-53 (60)
339 PRK15431 ferrous iron transpor 90.1 0.45 9.7E-06 33.9 3.5 43 52-101 7-49 (78)
340 PRK11014 transcriptional repre 90.0 0.38 8.2E-06 39.0 3.6 46 63-116 24-69 (141)
341 COG0275 Predicted S-adenosylme 90.0 0.73 1.6E-05 41.9 5.7 66 194-260 12-84 (314)
342 COG3510 CmcI Cephalosporin hyd 89.7 3.8 8.1E-05 34.8 9.2 104 206-311 69-188 (237)
343 PF01325 Fe_dep_repress: Iron 89.6 0.38 8.2E-06 32.7 2.8 35 63-101 21-55 (60)
344 PF03514 GRAS: GRAS domain fam 89.4 3.7 8E-05 39.2 10.4 111 195-308 100-248 (374)
345 PF05958 tRNA_U5-meth_tr: tRNA 89.3 0.23 5.1E-06 46.9 2.2 61 194-258 186-253 (352)
346 smart00529 HTH_DTXR Helix-turn 89.3 0.47 1E-05 35.4 3.4 46 67-122 2-47 (96)
347 COG4190 Predicted transcriptio 89.2 0.49 1.1E-05 37.1 3.5 47 48-101 65-111 (144)
348 COG3432 Predicted transcriptio 89.2 0.27 5.8E-06 36.6 1.9 63 52-123 20-83 (95)
349 PHA02943 hypothetical protein; 89.1 0.57 1.2E-05 37.8 3.8 43 51-101 15-57 (165)
350 PRK10870 transcriptional repre 88.9 0.56 1.2E-05 39.6 4.0 70 49-123 57-126 (176)
351 KOG2730 Methylase [General fun 88.9 0.24 5.3E-06 42.7 1.7 54 206-260 94-154 (263)
352 PF00325 Crp: Bacterial regula 88.8 0.31 6.7E-06 28.4 1.6 31 64-98 2-32 (32)
353 PF06163 DUF977: Bacterial pro 88.8 0.78 1.7E-05 35.8 4.3 50 45-101 10-59 (127)
354 COG1733 Predicted transcriptio 88.8 0.78 1.7E-05 36.0 4.5 79 28-123 13-92 (120)
355 cd07153 Fur_like Ferric uptake 88.4 0.79 1.7E-05 35.5 4.3 63 49-115 3-66 (116)
356 cd08283 FDH_like_1 Glutathione 88.2 3.3 7.2E-05 39.6 9.4 100 204-305 182-308 (386)
357 cd07377 WHTH_GntR Winged helix 88.2 0.9 1.9E-05 30.9 4.1 33 65-101 26-58 (66)
358 TIGR00373 conserved hypothetic 88.0 0.62 1.3E-05 38.5 3.6 44 50-100 17-60 (158)
359 PF05711 TylF: Macrocin-O-meth 87.8 0.4 8.7E-06 42.7 2.6 98 206-305 74-214 (248)
360 COG1846 MarR Transcriptional r 87.5 0.87 1.9E-05 35.3 4.1 73 45-124 20-92 (126)
361 PRK14165 winged helix-turn-hel 87.5 0.73 1.6E-05 40.2 3.9 54 63-123 20-73 (217)
362 PRK13777 transcriptional regul 87.5 1 2.2E-05 38.3 4.7 68 49-123 47-114 (185)
363 PF08279 HTH_11: HTH domain; 86.7 0.97 2.1E-05 29.8 3.4 40 51-96 4-43 (55)
364 COG1063 Tdh Threonine dehydrog 85.3 5.7 0.00012 37.5 9.1 93 208-308 170-274 (350)
365 PRK04172 pheS phenylalanyl-tRN 85.3 0.81 1.8E-05 45.3 3.4 67 48-125 7-73 (489)
366 COG0287 TyrA Prephenate dehydr 85.2 4.7 0.0001 36.7 8.1 87 208-299 4-94 (279)
367 PRK11179 DNA-binding transcrip 85.2 1.1 2.4E-05 36.8 3.7 47 47-100 9-55 (153)
368 PF02153 PDH: Prephenate dehyd 85.1 1.2 2.6E-05 40.1 4.2 76 220-301 1-77 (258)
369 PF04182 B-block_TFIIIC: B-blo 84.8 1.1 2.3E-05 32.0 3.0 50 47-101 2-51 (75)
370 PF06962 rRNA_methylase: Putat 84.6 0.84 1.8E-05 36.8 2.6 105 232-359 1-127 (140)
371 PRK11169 leucine-responsive tr 84.5 1 2.2E-05 37.5 3.2 48 46-100 13-60 (164)
372 PF08784 RPA_C: Replication pr 84.1 0.95 2.1E-05 34.3 2.7 50 47-100 47-97 (102)
373 KOG2539 Mitochondrial/chloropl 83.7 2.7 5.9E-05 40.5 5.9 102 206-307 200-319 (491)
374 PRK05638 threonine synthase; V 83.2 1.6 3.5E-05 42.6 4.5 63 50-122 374-438 (442)
375 PF05971 Methyltransf_10: Prot 83.1 8.3 0.00018 35.4 8.7 72 206-278 102-191 (299)
376 COG1522 Lrp Transcriptional re 82.9 1.5 3.3E-05 35.8 3.6 48 47-101 8-55 (154)
377 PRK01747 mnmC bifunctional tRN 82.8 3.1 6.8E-05 42.9 6.6 97 206-302 57-205 (662)
378 KOG1596 Fibrillarin and relate 82.8 5.3 0.00011 35.2 6.8 95 204-302 154-260 (317)
379 COG2933 Predicted SAM-dependen 82.4 3.5 7.6E-05 36.7 5.7 84 205-296 210-296 (358)
380 PF03444 HrcA_DNA-bdg: Winged 82.1 3 6.4E-05 29.8 4.2 53 63-123 22-74 (78)
381 COG4565 CitB Response regulato 81.8 1.3 2.9E-05 38.1 2.8 44 52-101 163-206 (224)
382 PF07789 DUF1627: Protein of u 81.7 2 4.3E-05 34.5 3.6 36 63-102 5-40 (155)
383 PLN02853 Probable phenylalanyl 81.6 1.3 2.9E-05 43.2 3.1 69 47-126 3-72 (492)
384 PF02002 TFIIE_alpha: TFIIE al 81.3 1.2 2.7E-05 33.9 2.3 44 51-101 17-60 (105)
385 TIGR01610 phage_O_Nterm phage 81.2 2.1 4.5E-05 32.0 3.5 44 63-115 46-89 (95)
386 PF05206 TRM13: Methyltransfer 81.1 4 8.6E-05 36.7 5.8 36 204-239 16-56 (259)
387 PRK09424 pntA NAD(P) transhydr 81.1 9 0.0002 38.1 8.8 94 206-304 164-286 (509)
388 COG2512 Predicted membrane-ass 80.9 1.8 3.9E-05 38.8 3.5 48 49-102 197-244 (258)
389 PF14394 DUF4423: Domain of un 80.5 2.7 5.9E-05 35.2 4.3 47 64-120 39-87 (171)
390 COG3413 Predicted DNA binding 80.3 1.4 3.1E-05 38.4 2.7 43 40-92 160-202 (215)
391 PRK07502 cyclohexadienyl dehyd 80.0 9.2 0.0002 35.3 8.1 90 207-301 6-98 (307)
392 PF00392 GntR: Bacterial regul 79.9 1.7 3.6E-05 29.7 2.4 35 63-101 22-57 (64)
393 TIGR02787 codY_Gpos GTP-sensin 79.7 5.2 0.00011 35.2 5.8 66 27-100 165-230 (251)
394 PRK10742 putative methyltransf 79.7 3.3 7.3E-05 36.8 4.7 45 196-243 77-124 (250)
395 PRK04214 rbn ribonuclease BN/u 79.6 2.1 4.5E-05 41.4 3.8 45 63-117 309-353 (412)
396 PF14740 DUF4471: Domain of un 79.1 3.4 7.5E-05 37.6 4.8 76 250-354 201-286 (289)
397 PTZ00357 methyltransferase; Pr 79.1 8 0.00017 39.4 7.5 132 166-298 639-830 (1072)
398 TIGR00498 lexA SOS regulatory 78.6 3.4 7.3E-05 35.5 4.5 50 48-101 7-59 (199)
399 PF13545 HTH_Crp_2: Crp-like h 78.3 1.8 3.8E-05 30.6 2.2 34 64-101 28-61 (76)
400 PF01189 Nol1_Nop2_Fmu: NOL1/N 78.2 3 6.5E-05 38.1 4.2 101 204-304 83-220 (283)
401 PF13730 HTH_36: Helix-turn-he 78.1 2.1 4.4E-05 28.1 2.3 30 65-98 26-55 (55)
402 COG1378 Predicted transcriptio 77.8 4.2 9.2E-05 36.3 4.9 61 49-120 18-78 (247)
403 PRK13699 putative methylase; P 77.7 9 0.0002 33.7 7.0 76 251-356 2-95 (227)
404 PF02636 Methyltransf_28: Puta 77.6 3.4 7.3E-05 37.0 4.3 33 206-238 18-58 (252)
405 COG1497 Predicted transcriptio 76.7 4 8.7E-05 35.7 4.2 50 64-123 25-74 (260)
406 PRK13509 transcriptional repre 76.7 2.9 6.2E-05 37.5 3.6 46 49-101 7-52 (251)
407 COG1510 Predicted transcriptio 76.5 3.3 7.2E-05 34.3 3.5 36 63-102 40-75 (177)
408 COG1255 Uncharacterized protei 76.4 34 0.00073 26.6 8.6 86 206-304 13-103 (129)
409 PRK09775 putative DNA-binding 76.2 2.9 6.3E-05 40.7 3.7 54 52-118 5-58 (442)
410 PTZ00326 phenylalanyl-tRNA syn 76.1 2.7 5.9E-05 41.3 3.4 70 47-126 6-75 (494)
411 COG1565 Uncharacterized conser 75.7 14 0.0003 34.7 7.7 64 175-243 51-123 (370)
412 KOG0024 Sorbitol dehydrogenase 75.4 18 0.0004 33.4 8.2 96 204-307 167-277 (354)
413 PF08221 HTH_9: RNA polymerase 75.2 8.7 0.00019 26.1 4.8 56 29-100 4-59 (62)
414 TIGR01321 TrpR trp operon repr 74.9 11 0.00023 28.1 5.5 40 46-93 41-80 (94)
415 PF05430 Methyltransf_30: S-ad 74.7 4.4 9.6E-05 32.0 3.7 53 284-369 71-123 (124)
416 PF12324 HTH_15: Helix-turn-he 74.5 2.5 5.5E-05 30.0 2.0 35 52-93 29-63 (77)
417 PF05331 DUF742: Protein of un 74.4 3.7 7.9E-05 31.8 3.1 41 51-100 47-87 (114)
418 COG5379 BtaA S-adenosylmethion 74.3 6.2 0.00013 35.8 4.9 57 248-304 306-367 (414)
419 KOG2651 rRNA adenine N-6-methy 74.3 4.5 9.7E-05 38.1 4.1 43 196-239 143-185 (476)
420 PF13404 HTH_AsnC-type: AsnC-t 73.8 4.1 9E-05 25.3 2.7 38 48-92 4-41 (42)
421 PF13518 HTH_28: Helix-turn-he 73.4 4.7 0.0001 25.9 3.1 30 65-98 13-42 (52)
422 PF03686 UPF0146: Uncharacteri 73.4 21 0.00046 28.1 7.1 87 206-306 13-105 (127)
423 PF05584 Sulfolobus_pRN: Sulfo 73.2 6.1 0.00013 27.7 3.6 42 51-100 9-50 (72)
424 PRK10906 DNA-binding transcrip 72.8 3.6 7.7E-05 36.9 3.2 47 48-101 6-52 (252)
425 PF12692 Methyltransf_17: S-ad 72.6 4.6 9.9E-05 32.7 3.3 111 194-306 18-137 (160)
426 PRK10434 srlR DNA-bindng trans 71.9 3.7 8E-05 36.9 3.1 47 48-101 6-52 (256)
427 PRK11886 bifunctional biotin-- 71.7 5 0.00011 37.3 4.0 44 49-99 6-49 (319)
428 PF05732 RepL: Firmicute plasm 71.6 4 8.7E-05 34.0 3.0 46 64-119 75-120 (165)
429 PF12793 SgrR_N: Sugar transpo 71.3 3.7 8E-05 32.0 2.5 35 63-101 18-52 (115)
430 COG1568 Predicted methyltransf 71.3 14 0.00031 33.3 6.3 207 66-302 36-259 (354)
431 PF13384 HTH_23: Homeodomain-l 71.1 3.3 7.1E-05 26.5 1.9 41 48-97 6-46 (50)
432 KOG1501 Arginine N-methyltrans 71.1 5.4 0.00012 38.2 3.9 88 206-294 66-165 (636)
433 COG5631 Predicted transcriptio 69.8 14 0.00031 30.2 5.5 80 35-122 64-150 (199)
434 PRK15001 SAM-dependent 23S rib 68.8 30 0.00065 33.1 8.5 90 208-305 46-144 (378)
435 PRK09954 putative kinase; Prov 68.0 6.8 0.00015 37.0 4.1 44 49-99 5-48 (362)
436 cd00315 Cyt_C5_DNA_methylase C 67.8 22 0.00047 32.3 7.2 123 209-356 2-142 (275)
437 PRK09802 DNA-binding transcrip 67.6 5.5 0.00012 36.1 3.2 47 48-101 18-64 (269)
438 PRK10411 DNA-binding transcrip 67.2 7.5 0.00016 34.5 4.0 46 49-101 6-51 (240)
439 PF11994 DUF3489: Protein of u 67.1 14 0.0003 26.0 4.3 42 52-100 15-58 (72)
440 cd08237 ribitol-5-phosphate_DH 66.9 30 0.00064 32.3 8.2 93 205-304 162-257 (341)
441 TIGR01202 bchC 2-desacetyl-2-h 66.3 46 0.00099 30.5 9.2 85 207-304 145-232 (308)
442 PF01358 PARP_regulatory: Poly 66.2 32 0.0007 31.2 7.7 79 204-306 56-138 (294)
443 PF02254 TrkA_N: TrkA-N domain 66.0 17 0.00036 27.8 5.3 84 212-303 3-96 (116)
444 cd01842 SGNH_hydrolase_like_5 65.7 13 0.00029 31.2 4.8 41 266-306 52-102 (183)
445 TIGR02147 Fsuc_second hypothet 65.4 9.4 0.0002 34.6 4.2 48 63-118 136-183 (271)
446 COG1675 TFA1 Transcription ini 65.0 7.8 0.00017 32.5 3.4 45 50-101 21-65 (176)
447 PF01475 FUR: Ferric uptake re 64.8 5.3 0.00011 31.1 2.3 67 46-116 7-74 (120)
448 PRK11534 DNA-binding transcrip 64.7 8.7 0.00019 33.5 3.9 37 61-101 27-63 (224)
449 PF07109 Mg-por_mtran_C: Magne 64.4 34 0.00073 25.6 6.3 77 273-361 4-86 (97)
450 PRK12423 LexA repressor; Provi 64.4 9.7 0.00021 32.8 4.0 35 64-101 25-59 (202)
451 PRK09334 30S ribosomal protein 64.2 6 0.00013 28.9 2.2 34 64-101 41-74 (86)
452 KOG1098 Putative SAM-dependent 64.1 11 0.00025 37.7 4.7 118 187-309 25-163 (780)
453 COG1349 GlpR Transcriptional r 63.6 7.8 0.00017 34.7 3.4 46 49-101 7-52 (253)
454 cd00401 AdoHcyase S-adenosyl-L 63.1 33 0.00071 33.2 7.7 99 194-304 189-290 (413)
455 TIGR03433 padR_acidobact trans 63.0 21 0.00045 26.8 5.2 68 52-123 9-82 (100)
456 smart00531 TFIIE Transcription 62.4 9.1 0.0002 31.2 3.3 42 50-98 4-45 (147)
457 COG1802 GntR Transcriptional r 62.2 12 0.00026 32.9 4.3 37 61-101 36-72 (230)
458 PF02295 z-alpha: Adenosine de 62.0 8.9 0.00019 26.5 2.7 61 47-116 4-64 (66)
459 PRK04424 fatty acid biosynthes 62.0 6.4 0.00014 33.5 2.4 46 48-100 8-53 (185)
460 PRK05225 ketol-acid reductoiso 61.7 11 0.00024 36.7 4.1 91 207-305 36-133 (487)
461 PF03428 RP-C: Replication pro 61.5 8.7 0.00019 32.3 3.1 33 64-100 70-103 (177)
462 PRK10736 hypothetical protein; 61.1 9.2 0.0002 36.3 3.5 52 50-115 311-362 (374)
463 PRK01381 Trp operon repressor; 61.0 35 0.00075 25.7 5.8 39 46-92 41-79 (99)
464 PF02796 HTH_7: Helix-turn-hel 60.7 8.4 0.00018 24.2 2.2 23 64-90 21-43 (45)
465 PRK10046 dpiA two-component re 60.6 9.6 0.00021 33.2 3.4 45 51-101 166-210 (225)
466 PRK06545 prephenate dehydrogen 60.5 48 0.001 31.3 8.4 84 209-297 2-89 (359)
467 PF00165 HTH_AraC: Bacterial r 60.4 4.4 9.5E-05 24.9 0.9 27 63-93 7-33 (42)
468 COG0640 ArsR Predicted transcr 59.5 16 0.00034 26.7 4.0 52 43-101 21-72 (110)
469 PRK08507 prephenate dehydrogen 59.3 38 0.00083 30.5 7.2 83 209-299 2-87 (275)
470 COG0286 HsdM Type I restrictio 59.3 49 0.0011 32.9 8.4 99 205-303 185-326 (489)
471 COG3398 Uncharacterized protei 59.3 20 0.00044 31.1 4.9 50 45-101 99-148 (240)
472 TIGR03338 phnR_burk phosphonat 59.0 12 0.00025 32.4 3.6 36 62-101 32-67 (212)
473 PF09681 Phage_rep_org_N: N-te 58.9 12 0.00026 29.4 3.3 47 63-119 52-98 (121)
474 PRK07417 arogenate dehydrogena 58.6 54 0.0012 29.7 8.1 82 209-298 2-86 (279)
475 PF14338 Mrr_N: Mrr N-terminal 58.4 22 0.00047 26.2 4.5 35 84-124 56-90 (92)
476 PRK01905 DNA-binding protein F 58.2 25 0.00054 25.0 4.6 70 10-91 1-73 (77)
477 cd05213 NAD_bind_Glutamyl_tRNA 57.6 1E+02 0.0022 28.5 9.8 122 206-347 177-302 (311)
478 TIGR00561 pntA NAD(P) transhyd 57.6 30 0.00066 34.4 6.5 92 206-301 163-282 (511)
479 PRK11753 DNA-binding transcrip 57.5 11 0.00024 32.3 3.2 34 64-101 168-201 (211)
480 TIGR03879 near_KaiC_dom probab 57.4 7.6 0.00017 27.4 1.7 33 64-100 32-64 (73)
481 PF08280 HTH_Mga: M protein tr 57.0 12 0.00025 25.1 2.6 40 48-94 6-45 (59)
482 PRK11639 zinc uptake transcrip 56.8 16 0.00034 30.5 3.9 54 46-101 25-79 (169)
483 PRK11414 colanic acid/biofilm 56.2 17 0.00036 31.7 4.1 37 61-101 31-67 (221)
484 PF03297 Ribosomal_S25: S25 ri 56.1 9.9 0.00021 29.0 2.3 47 52-102 46-93 (105)
485 PRK11642 exoribonuclease R; Pr 56.0 15 0.00032 38.9 4.3 48 52-101 24-71 (813)
486 PF00126 HTH_1: Bacterial regu 56.0 18 0.00038 24.2 3.4 54 49-118 3-59 (60)
487 COG1748 LYS9 Saccharopine dehy 55.8 53 0.0012 31.5 7.6 80 208-292 2-91 (389)
488 PRK08818 prephenate dehydrogen 55.5 44 0.00095 31.8 7.0 73 207-297 4-82 (370)
489 COG4901 Ribosomal protein S25 55.4 13 0.00028 27.9 2.7 50 49-102 43-93 (107)
490 PRK08293 3-hydroxybutyryl-CoA 55.3 56 0.0012 29.7 7.6 90 208-301 4-118 (287)
491 PHA02701 ORF020 dsRNA-binding 55.3 17 0.00037 30.6 3.7 48 48-101 5-52 (183)
492 cd05188 MDR Medium chain reduc 55.2 1.3E+02 0.0027 26.3 9.9 93 205-306 133-235 (271)
493 PRK11161 fumarate/nitrate redu 55.2 12 0.00026 32.8 3.1 34 64-101 184-217 (235)
494 PF06969 HemN_C: HemN C-termin 55.1 13 0.00029 25.2 2.7 45 64-119 20-65 (66)
495 TIGR03697 NtcA_cyano global ni 55.0 11 0.00023 31.8 2.7 34 64-101 143-176 (193)
496 KOG1209 1-Acyl dihydroxyaceton 54.1 1.4E+02 0.0031 26.1 9.1 76 205-301 5-84 (289)
497 PF08222 HTH_CodY: CodY helix- 54.0 6.8 0.00015 26.0 0.9 34 63-100 3-36 (61)
498 PRK06719 precorrin-2 dehydroge 53.7 1.1E+02 0.0025 25.0 8.5 79 206-292 12-93 (157)
499 PRK05562 precorrin-2 dehydroge 53.6 90 0.0019 27.4 8.2 65 206-271 24-92 (223)
500 PRK00215 LexA repressor; Valid 53.2 21 0.00046 30.7 4.3 36 63-101 22-57 (205)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=3.3e-46 Score=334.46 Aligned_cols=338 Identities=44% Similarity=0.803 Sum_probs=302.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCC-CCCCCcccHHHHHHHHhcCcccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPS-RNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+++++.-.++++++++..++++++|+|||+||.|.+.+ + ..++|..+.. ++|..+.++.|+||.|++.+++.+.
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~ 76 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCR 76 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceee
Confidence 34567788999999999999999999999999999853 2 7888887774 4777899999999999999999874
Q ss_pred ccCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHH
Q 017595 102 LSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGV 181 (369)
Q Consensus 102 ~~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~ 181 (369)
... .. .|++++.++.++..++..++.+++...+.+...+.|..+.++++.+..+|...+|...++|...+......
T Consensus 77 ~~~---~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~ 152 (342)
T KOG3178|consen 77 LVG---GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKD 152 (342)
T ss_pred eec---ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHH
Confidence 211 12 89999999988877666788898888888889999999999999999999999997889999888888889
Q ss_pred HHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-CCceEEeCCCCC
Q 017595 182 FNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-RGVKHIGGNMFE 260 (369)
Q Consensus 182 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~rv~~~~~d~~~ 260 (369)
+++.|...+....+.+++.+.++++....+|||||.|..+..++..||+++++.+|+|.+++.+... +.|+.+.||+|+
T Consensus 153 ~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq 232 (342)
T KOG3178|consen 153 FNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQ 232 (342)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccc
Confidence 9999999999888899998888888999999999999999999999999999999999999999988 899999999999
Q ss_pred CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV-TPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 261 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
+.|.+|+|++.++||||+|++|+++|++|++.|+|||++++.|.+.++ .............+|+.|+....+|++|+.+
T Consensus 233 ~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 233 DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLK 312 (342)
T ss_pred cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHH
Confidence 999999999999999999999999999999999999999999998875 3222223445678899999888789999999
Q ss_pred HHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
||+.++.++||.+..+...+..+++|+++|
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999987
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=6.8e-40 Score=293.21 Aligned_cols=237 Identities=30% Similarity=0.592 Sum_probs=208.0
Q ss_pred CCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHH
Q 017595 108 NQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAML 187 (369)
Q Consensus 108 ~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~ 187 (369)
++++|++|+.++.++.+.+..++..++.+...+.++..|.+|.+++++|.++|+..+|.++|+|++++++..+.|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 47899999999999988876678887777677889999999999999999999999998899999999999999999999
Q ss_pred hhhhHhH-HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCC
Q 017595 188 NHTSIVM-NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGD 266 (369)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D 266 (369)
..+.... ..+...++ +++..+|||||||+|.++.++++++|+++++++|+|.+++.+++.+||++++|||++++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9888777 77788787 999999999999999999999999999999999999999988888999999999999898899
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCC--CEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPEN--GKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
+|++++|||+|+|+++.++|++++++|+|| |+|+|+|.+.++.............+|+.|++.+ +|+.||.+||++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 999999999999999999999999999999 9999999999887655443333468899999887 7999999999999
Q ss_pred HH
Q 017595 345 AN 346 (369)
Q Consensus 345 l~ 346 (369)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 84
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.6e-38 Score=294.02 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=212.2
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
-..+|++|+++||||+|.+ +|.|+++||+++|+ +++.+.|+|++|+++|++++. +++|++|+.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~-------~~~y~~t~~~~ 67 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-------DGKWSLTEFAD 67 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec-------CCcEecchhHH
Confidence 3578999999999999987 59999999999999 999999999999999999973 58999999999
Q ss_pred hhhcCCCCC---ChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHH-hhhhHhHH
Q 017595 120 YFVLNQDGV---SLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAML-NHTSIVMN 195 (369)
Q Consensus 120 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~-~~~~~~~~ 195 (369)
.++.+.+.. ++.++..+.. ......|.+|.+++++ .++|...++ +....+.. ..|...|. .......+
T Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~ 139 (306)
T TIGR02716 68 YMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQ 139 (306)
T ss_pred hhccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHH
Confidence 777655431 1223333221 1223568899999984 344433221 11112222 23333343 33334455
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCCCE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKGDA 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~ 267 (369)
.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|.+|+
T Consensus 140 ~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~ 218 (306)
T TIGR02716 140 LLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 218 (306)
T ss_pred HHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCE
Confidence 6666665 77888999999999999999999999999999999888876643 2689999999997 6777799
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh--hcCCccCCHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ--FSGGRERTTQEFMALA 345 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~t~~e~~~ll 345 (369)
|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++...+. .. ...+..+... ..-...++.++|.++|
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN-FD---YLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch-hh---HHHHHHHHcccccccccCCCHHHHHHHH
Confidence 9999999999999899999999999999999999999876543221 11 1111111000 0011234589999999
Q ss_pred HHcCCcceeEE
Q 017595 346 NEAGFNGVNYE 356 (369)
Q Consensus 346 ~~aGf~~~~~~ 356 (369)
+++||+.++++
T Consensus 295 ~~aGf~~v~~~ 305 (306)
T TIGR02716 295 ESLGYKDVTMV 305 (306)
T ss_pred HHcCCCeeEec
Confidence 99999988764
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=7.8e-18 Score=147.02 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=120.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC--CEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG--DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~v~~~~vl 274 (369)
..+.+|||||||||.++..+++..++.+++++|. +.+++.+++. ..++++.+|+.. |+|.. |+|++++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 9999988764 238999999999 99975 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH-HHHhh----c------------CCccCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII-MLMQF----S------------GGRERT 337 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~----~------------~~~~~t 337 (369)
++++| ..++|++++|+|||||++++.|...+..+.... ....+.+. .+-.. . .-...+
T Consensus 130 rnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~ 204 (238)
T COG2226 130 RNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD 204 (238)
T ss_pred hcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence 99964 568999999999999999999998876543321 11111111 11111 0 113358
Q ss_pred HHHHHHHHHHcCCcceeEEEecCcee
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFC 363 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 363 (369)
.+++.++++++||+.+.......+..
T Consensus 205 ~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 205 QEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred HHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 99999999999999998766665443
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.77 E-value=1.7e-18 Score=154.62 Aligned_cols=164 Identities=14% Similarity=0.199 Sum_probs=120.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCCCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKGDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~v~~~~v 273 (369)
....+|||||||+|.++..++++ +|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35679999999999999999987 47899999999 8888877542 478999999988 6666799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHH-Hhh-hhh-----h---hH--HHHHhhcCCccCCHHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAA-ARE-ASM-----T---DI--IMLMQFSGGRERTTQEF 341 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-~~~-~~~-----~---d~--~~~~~~~~~~~~t~~e~ 341 (369)
+|++++++...+|++++++|+|||++++.|.+.+++...... ... ... . .+ ........-+..|.+++
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETH 211 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHH
Confidence 999988888899999999999999999999877554321110 000 000 0 00 00000012245699999
Q ss_pred HHHHHHcCCcceeEEEecCceeEEEEe
Q 017595 342 MALANEAGFNGVNYECFVCNFCIIEFI 368 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 368 (369)
.+++++|||+.+++......+.+..++
T Consensus 212 ~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 212 KARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 999999999988765555544444443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=4.7e-17 Score=146.80 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=116.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC---------CCCceEEeCCCCC-CCCCC--CEEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS---------YRGVKHIGGNMFE-RIPKG--DAIL 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p~~--D~v~ 269 (369)
.....+|||||||+|.++..+++.+ |+.+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4566899999999999999998875 6789999999 888887643 2479999999988 77754 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH---HHHhhc-----------CCcc
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII---MLMQFS-----------GGRE 335 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~~~~-----------~~~~ 335 (369)
+.+++|++++ ..++|++++++|||||++++.|...+......... ....... ...... -...
T Consensus 151 ~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999964 56899999999999999999999865532111110 0001000 000000 0234
Q ss_pred CCHHHHHHHHHHcCCcceeEEEecCceeE
Q 017595 336 RTTQEFMALANEAGFNGVNYECFVCNFCI 364 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 364 (369)
.+.+++.++++++||+.++......+.+.
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~ 255 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMG 255 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeE
Confidence 69999999999999999998887755443
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=2.6e-18 Score=154.03 Aligned_cols=154 Identities=14% Similarity=0.211 Sum_probs=114.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCCCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKGDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~v~~~~v 273 (369)
....+|||||||+|..+..+++. +|+.+++++|. +.+++.+++. .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 35689999999999999999884 68999999999 8888877542 479999999987 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH------------HHHhhcC-CccCCHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII------------MLMQFSG-GRERTTQE 340 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~------------~~~~~~~-~~~~t~~e 340 (369)
+|++++++...++++++++|+|||.+++.|.+.......... ....+.++. +.....+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988888899999999999999999999876554322110 000111110 0000001 22358999
Q ss_pred HHHHHHHcCCcceeEEEec
Q 017595 341 FMALANEAGFNGVNYECFV 359 (369)
Q Consensus 341 ~~~ll~~aGf~~~~~~~~~ 359 (369)
..++|++|||+.+++....
T Consensus 214 ~~~~L~~aGF~~v~~~~~~ 232 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQC 232 (247)
T ss_pred HHHHHHHcCchhHHHHHHH
Confidence 9999999999987765433
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=9.6e-19 Score=154.34 Aligned_cols=161 Identities=22% Similarity=0.345 Sum_probs=81.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~v~~~~ 272 (369)
.....+|||||||+|.++..++++. |+.+++++|. +.+++.+++. .+|+++.+|+.+ |++.. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4566899999999999999999884 6789999999 9999887642 589999999998 88765 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH--HH-hhcC------------CccCC
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM--LM-QFSG------------GRERT 337 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~-~~~~------------~~~~t 337 (369)
.||+++| ..+.|++++|+|||||+++|+|...+..+.... .+...+...+ .. ...+ ....+
T Consensus 125 glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~--~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRA--LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH--HHHH--------------------------------
T ss_pred hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc--eeeeeecccccccccccccccccccccccccccccc
Confidence 9999966 457999999999999999999998776421111 1111111000 00 0001 11237
Q ss_pred HHHHHHHHHHcCCcceeEEEecCcee-EEEEe
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFC-IIEFI 368 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~-vi~~~ 368 (369)
.+++.++++++||+.++..+...+.+ +..++
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccC
Confidence 89999999999999999887775543 44443
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=8.6e-17 Score=142.99 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=122.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 265 (369)
.++..++ .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4445554 5567899999999999999999885 6789999999 788766543 2579999999987 66543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH---------------h
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM---------------Q 329 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---------------~ 329 (369)
|+|++..++|++++ ..++|+++.+.|+|||++++.+...+.... ........+...+-. .
T Consensus 115 fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 115 FDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred ccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 99999999999855 468999999999999999999876543211 100000000000000 0
Q ss_pred hcCCccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEEeC
Q 017595 330 FSGGRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEFIK 369 (369)
Q Consensus 330 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 369 (369)
.......+.+++.++|+++||+.+++.... +...++.++|
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 001223578999999999999999998887 6677888776
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.74 E-value=7.1e-17 Score=145.79 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=119.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG-- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-- 265 (369)
...+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ .+++.++.+|+.+ +++.+
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 346666665 6778899999999999999998765 679999999 777766553 3579999999987 67653
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..+++|++.++...+|++++++|||||++++.+........ +.... .. ... .......+.+++.+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~---~~--~~~-~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEF---KA--YIK-KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHH---HH--HHH-hcCCCCCCHHHHHHHH
Confidence 9999999999998777889999999999999999999987654211 11111 00 111 1123456899999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||+.++.....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999987654
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=2.9e-16 Score=141.57 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=110.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCC--CCEEEe
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPK--GDAILM 270 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~--~D~v~~ 270 (369)
...+++.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+..+. .|+|++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 356677676 56778999999999999999999999999999999 888888765 3789999998763232 399999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhh---hhhhHH-HHHhhcCCccCCHHHHHHHHH
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA---SMTDII-MLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~~~~~t~~e~~~ll~ 346 (369)
..++||+++ ..+++++++++|||||++++........+......... .+.... ...........+.+++.++|+
T Consensus 96 ~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999999965 46899999999999999998743211111100000000 010000 000001223468999999999
Q ss_pred HcCCccee
Q 017595 347 EAGFNGVN 354 (369)
Q Consensus 347 ~aGf~~~~ 354 (369)
++||++..
T Consensus 174 ~aGf~v~~ 181 (255)
T PRK14103 174 DAGCKVDA 181 (255)
T ss_pred hCCCeEEE
Confidence 99998543
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=6e-16 Score=144.89 Aligned_cols=151 Identities=18% Similarity=0.229 Sum_probs=109.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC--CEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG--DAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~v~~~~v 273 (369)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 679999999 777765543 1579999999988 66653 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcc--hHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA--TAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
+||+++ ..+++++++++|||||+++|.+......... .........++....... --...+.++|.++++++||.
T Consensus 196 ~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 999965 5689999999999999999998754322111 000001111111111000 11234899999999999999
Q ss_pred ceeEEEec
Q 017595 352 GVNYECFV 359 (369)
Q Consensus 352 ~~~~~~~~ 359 (369)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.68 E-value=1.5e-15 Score=130.21 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=111.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC------CeEEEcch-hHHHHhCCCC---------CCceEEeCCCCC-CCCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH------IEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~- 265 (369)
.....++|||+||||..+..+++..+. .+++++|+ |.+++.++++ .++.++++|..+ |+|..
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 334589999999999999999999877 78999999 9998876542 459999999999 99875
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH-----------------HH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII-----------------ML 327 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------------~~ 327 (369)
|.|++.+-+.++++ ..+.|++++|+|||||++.+.|+...+... ..++.....+. .+
T Consensus 178 ~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred ceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhhhH
Confidence 99999999999966 568999999999999999999987544211 11111111111 11
Q ss_pred HhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 328 MQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 328 ~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
... --+..+.+++..+.++|||+.+.
T Consensus 253 veS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred Hhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 111 12335899999999999999887
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=4.7e-15 Score=132.33 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=120.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~- 264 (369)
.++..+. ..+..+|||||||+|.++..++..+| +.+++++|. +.+++.+++. .++.++.+|+.+ +.+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4444444 34568999999999999999999988 789999999 7776655442 568999999987 4443
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH---HHhhcC--------
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM---LMQFSG-------- 332 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~-------- 332 (369)
.|+|++.+++|++++ ...+|+++.++|+|||++++.+...+..... ...........+ .....+
T Consensus 121 ~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 121 SFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPL--KKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHH--HHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 399999999999954 5689999999999999999998876543210 000000000000 000001
Q ss_pred ----CccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEEeC
Q 017595 333 ----GRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEFIK 369 (369)
Q Consensus 333 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 369 (369)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578999999999999999998865 6677888775
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.66 E-value=3e-15 Score=138.27 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=109.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCCC--CEEEeccccccCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPKG--DAILMKWILHNWD 278 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 278 (369)
...+|||||||+|.++..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.. |+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999988889999999 8887776543 578999999987 66543 9999999999997
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+. ..+|+++++.|+|||++++.+...+.. +... ...+..+ ...+.+++.++|+++||+.+++...
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 65 478999999999999999987654321 1111 1111111 1257999999999999999998776
Q ss_pred c
Q 017595 359 V 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 5
No 16
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.7e-15 Score=134.67 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=130.9
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~ 264 (369)
..+.+++.+. +++..+|||||||-|.++...+++| +++++++++ ++..+.+++. .+|+++-.|..+..+.
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 3567777787 8899999999999999999999999 999999999 7777665542 5899999998774444
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
.|-|++..+++|+..+.-..+++++++.|+|||+++++....++.+.. ...++..-..+++|..++..++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHH
Confidence 799999999999999889999999999999999999999987764321 1223333334689999999999999
Q ss_pred HHHcCCcceeEEEec
Q 017595 345 ANEAGFNGVNYECFV 359 (369)
Q Consensus 345 l~~aGf~~~~~~~~~ 359 (369)
.+++||.+..+....
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998876554
No 17
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.65 E-value=7.8e-15 Score=129.50 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=119.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCC--CC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPK--GD 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~--~D 266 (369)
.+++.+. .....+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..++.++.+|+.+ +.+. .|
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3344343 346689999999999999999999987 78999998 777665543 2578999999987 5543 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh---hc-C----------
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ---FS-G---------- 332 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~-~---------- 332 (369)
+|++.+++|+.+ +...+|+++++.|+|||++++.+...+.... ............+... .. .
T Consensus 109 ~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 109 AVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred EEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 999999999985 4668999999999999999999886544311 1100111111000000 00 0
Q ss_pred -CccCCHHHHHHHHHHcCCcceeEEEecCc-eeEEEEeC
Q 017595 333 -GRERTTQEFMALANEAGFNGVNYECFVCN-FCIIEFIK 369 (369)
Q Consensus 333 -~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 369 (369)
....+.++|.++|+++||+.+++.+.... .++++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347899999999999999999998866 55666654
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=3.9e-15 Score=146.23 Aligned_cols=152 Identities=19% Similarity=0.258 Sum_probs=116.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~- 265 (369)
.+.+++.+. ++...+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++|..
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 445666665 5667899999999999999988876 779999999 777776643 2579999999988 66643
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++..+++|+++ ...+|++++++|+|||++++.+........... . ..... ..+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~---~~~~~---~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---F---AEYIK---QRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---H---HHHHH---hcCCCCCCHHHHHHH
Confidence 99999999999965 468999999999999999999987644321111 1 11111 124567899999999
Q ss_pred HHHcCCcceeEEEe
Q 017595 345 ANEAGFNGVNYECF 358 (369)
Q Consensus 345 l~~aGf~~~~~~~~ 358 (369)
++++||+++++...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999876543
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.63 E-value=6.4e-15 Score=135.11 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=108.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CCCCCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PSYRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~p~ 264 (369)
+..++..+. ....++|||||||+|.++..++..++. .++++|. +.++..+ ....++.+..+++.+ +...
T Consensus 110 ~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 110 WDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 345555554 334589999999999999999888764 7899998 5554432 223578888888766 3333
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
.|+|++..+|||+++ ...+|++++++|+|||.|++.+...+.......... .....|.. ....+|.+++..
T Consensus 188 ~FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~---~ry~k~~n---v~flpS~~~L~~ 259 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK---DRYAKMKN---VYFIPSVSALKN 259 (314)
T ss_pred CcCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch---HHHHhccc---cccCCCHHHHHH
Confidence 499999999999955 468999999999999999998776543321110000 00001110 123468999999
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
+++++||+.+++....
T Consensus 260 ~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 260 WLEKVGFENFRILDVL 275 (314)
T ss_pred HHHHCCCeEEEEEecc
Confidence 9999999999887543
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=2.2e-15 Score=135.94 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=113.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 265 (369)
++.+++++. +++..+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+--+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 557777776 8888999999999999999999998 789999998 666655432 268999999987622245
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|.|++..++.|++.+....+++++.++|+|||++++...+....... .......++..-..+++|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888999999999999999999988876543111 000111133333346799999999999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||++.++....
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999999887654
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.62 E-value=2.9e-15 Score=132.50 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=107.3
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEeccccccC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~ 277 (369)
++|||||||+|.++..+++.+|+.+++++|+ +.+++.++. .++++++.+|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777665543 2578999999976 55544 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
++ ...+|++++++|+|||++++.+.......... .. .......+.++|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~------------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE--HE------------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc--cc------------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 55 56899999999999999999987543211000 00 0012245789999999999999999877
Q ss_pred ecC
Q 017595 358 FVC 360 (369)
Q Consensus 358 ~~~ 360 (369)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 653
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=5.2e-15 Score=137.18 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=108.2
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CCCCCceEEeCCCCC-CCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PSYRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~p~~- 265 (369)
.++..++.+ ...+|||||||+|.++..++..++. .++++|. +.++..+ ....++.++.+|+.+ +.+..
T Consensus 113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 444445423 3589999999999999999998766 5999998 5444321 113579999999887 55444
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..++||..+ ...+|+++++.|+|||++++...+.+.......... .. +..|. .....+|.+++.+++
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~-~~--y~~~~---~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG-DR--YAKMR---NVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch-hH--HhcCc---cceeCCCHHHHHHHH
Confidence 99999999999854 568999999999999999987665544322110000 00 00010 012346899999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||+.+++....
T Consensus 263 ~~aGF~~i~~~~~~ 276 (322)
T PRK15068 263 ERAGFKDVRIVDVS 276 (322)
T ss_pred HHcCCceEEEEeCC
Confidence 99999999887543
No 23
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=3.4e-15 Score=124.82 Aligned_cols=137 Identities=21% Similarity=0.214 Sum_probs=96.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCC-C-CEEEeccccccCCh
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDD 279 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d 279 (369)
.....+|||||||+|.++..+.+... +++++|. +.+++. ..+.....+... +.+. . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999977654 8999998 777766 233333332223 2232 3 99999999999964
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
...+|+++++.|||||++++.++..... .. .....+. .... .......++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~---~~~~~~~-~~~~-~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP-SP---RSFLKWR-YDRP-YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH-HH---HHHHHCC-GTCH-HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch-hh---hHHHhcC-CcCc-cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6799999999999999999999876431 00 0111110 0000 00234567999999999999999875
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=1.5e-14 Score=125.14 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=105.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 265 (369)
+.+++.++ .....+|||+|||+|..+..++++ +.+++++|. +.+++.+++ ..++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34455554 445689999999999999999986 458999999 777776543 2468889999877 55544
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..++|++++++...++++++++|+|||++++.+.+..+..... .. --...+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~~----------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------VG----------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------CC----------CCCccCHHHHHHHh
Confidence 999999999999888889999999999999999877765543321000 00 01235788999998
Q ss_pred HHcCCcceeEE
Q 017595 346 NEAGFNGVNYE 356 (369)
Q Consensus 346 ~~aGf~~~~~~ 356 (369)
+ ||++++..
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 6 89887763
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=3.2e-14 Score=129.59 Aligned_cols=145 Identities=18% Similarity=0.294 Sum_probs=109.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~--D~v~~~~ 272 (369)
+....+|||||||+|..+..+++. .++.+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 456789999999999988877776 46678999999 888887664 2689999999987 66543 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcc
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNG 352 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 352 (369)
++|++++ ..+++++++++|||||++++.+....... +. . ...+..+...+ .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~---~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGEL-PE---E--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCC-CH---H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9999855 45799999999999999999998754321 11 0 11112222111 344568999999999999999
Q ss_pred eeEEE
Q 017595 353 VNYEC 357 (369)
Q Consensus 353 ~~~~~ 357 (369)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=8.8e-14 Score=125.74 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=108.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCCCCC-C-CCEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFERIP-K-GDAIL 269 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p-~-~D~v~ 269 (369)
...+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+..+ . .|+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 456777676 66778999999999999999999999999999999 8888877654 679999999976323 2 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhc---CCccCCHHHHHHHHH
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFS---GGRERTTQEFMALAN 346 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~t~~e~~~ll~ 346 (369)
+..++|++++ ..++|++++++|+|||++++.-......+.............+....... .....+..++.+++.
T Consensus 99 ~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 9999999865 46899999999999999988632111100000000000000000000000 123457889999999
Q ss_pred HcCCcc
Q 017595 347 EAGFNG 352 (369)
Q Consensus 347 ~aGf~~ 352 (369)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999874
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.58 E-value=5.8e-15 Score=135.98 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=103.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC--CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK--GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~--~D~v~~~~vl 274 (369)
...+|||||||+|.++..+++ ++.+++++|. +.+++.++.+ .+++++.+|+.+ +.+. .|+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346999999999999998876 3678999999 8888876532 378999999876 4443 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC----CccCCHHHHHHHHHHcCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG----GRERTTQEFMALANEAGF 350 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~t~~e~~~ll~~aGf 350 (369)
||+++. ..+|++++++|||||++++........ ..........++... ...+ .+..+.+++.++++++||
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~-lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRW-LPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhc-CCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 999664 589999999999999999987642210 000000000011111 1111 135689999999999999
Q ss_pred cceeEEEe
Q 017595 351 NGVNYECF 358 (369)
Q Consensus 351 ~~~~~~~~ 358 (369)
+++++..+
T Consensus 283 ~i~~~~G~ 290 (322)
T PLN02396 283 DVKEMAGF 290 (322)
T ss_pred eEEEEeee
Confidence 99988543
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=4.2e-15 Score=116.58 Aligned_cols=97 Identities=18% Similarity=0.300 Sum_probs=81.9
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCC-CC-CCCC-CCEEEecc-cc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNM-FE-RIPK-GDAILMKW-IL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~-~~-~~p~-~D~v~~~~-vl 274 (369)
..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+ .. +.+. .|+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 47999999999999999999999999999999 888876653 37999999999 33 3333 49999999 67
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWDD-EHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75543 577899999999999999999865
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.58 E-value=6e-14 Score=125.14 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=110.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC--
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG-- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~-- 265 (369)
.+++.+. +....+|||+|||+|.++..+++.+ |+.+++++|. +..++.+++ .+++.+..+|+.. +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3444455 6677899999999999999999987 7889999999 777665543 2678999999877 55543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc-chHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE-ATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++.++++++++ ...++++++++|+|||++++.+........ ............... .......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS---DHFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 99999999999965 568899999999999999998864221100 000000111111111 112233456789999
Q ss_pred HHHcCCcceeEEE
Q 017595 345 ANEAGFNGVNYEC 357 (369)
Q Consensus 345 l~~aGf~~~~~~~ 357 (369)
++++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999887644
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=4.4e-15 Score=123.19 Aligned_cols=137 Identities=21% Similarity=0.311 Sum_probs=100.1
Q ss_pred CCcceEEEEcCChhHHHHHHH-HhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCC-CCEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIIT-SRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPK-GDAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~-~D~v~~~~ 272 (369)
++..+|||+|||+|.++..++ +.+|+.+++++|. +.+++.++. .++++|+.+|+.+ + ++. .|+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5688999999999 888887765 3689999999999 4 433 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh--hcCCccCCHHHHHHHHHHcC
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ--FSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~t~~e~~~ll~~aG 349 (369)
++|++++ ...+|+++.++|+|||.+++.+...... ..........+.+-.. ...+. ..++|..+|++||
T Consensus 82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPNHNDE----LPEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEEHSHH----HHHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccC--HHHHHHHHHHHcCCCcEEEEEECChHHH----HHHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 9999955 4589999999999999999998872111 0011111111111111 11112 6789999999998
No 31
>PRK06922 hypothetical protein; Provisional
Probab=99.56 E-value=2.6e-14 Score=139.85 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=105.0
Q ss_pred ChhhhhhcCchHHHHHHHHHHhhhhH--hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH
Q 017595 167 GVYEYAGNDSRFNGVFNKAMLNHTSI--VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ 243 (369)
Q Consensus 167 ~~~e~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 243 (369)
.+|+++..+++....|...|...... ........++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 46777777766666666544432211 0111112223 44678999999999999999999999999999999 77777
Q ss_pred hCCCC-----CCceEEeCCCCC-C--CCCC--CEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 244 NAPSY-----RGVKHIGGNMFE-R--IPKG--DAILMKWILHNW-----------DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 244 ~a~~~-----~rv~~~~~d~~~-~--~p~~--D~v~~~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.+++. .++.++.+|..+ + ++.+ |+|+++.++|++ ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 66542 467889999876 3 4433 999999999976 2467889999999999999999999
Q ss_pred eccCCCC
Q 017595 303 DRMPMVT 309 (369)
Q Consensus 303 e~~~~~~ 309 (369)
|.+.++.
T Consensus 537 D~v~~E~ 543 (677)
T PRK06922 537 DGIMTED 543 (677)
T ss_pred eCccCCc
Confidence 9866543
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=3.5e-14 Score=128.00 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=107.4
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC--CCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE--RIPK 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~ 264 (369)
..+++.++ ....+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 45566554 45579999999999999999987 467899999 8888776542 578999999865 2333
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhh-hhhhhHHHHHh------hcCCcc
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAARE-ASMTDIIMLMQ------FSGGRE 335 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~-~~~~d~~~~~~------~~~~~~ 335 (369)
.|+|++..+||+++++ ..+|++++++|||||++++........ ...... ........... ..-...
T Consensus 111 ~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 185 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDYP 185 (255)
T ss_pred CCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCCC
Confidence 3999999999999654 589999999999999999876543210 000000 00000000000 000123
Q ss_pred CCHHHHHHHHHHcCCcceeEEEec
Q 017595 336 RTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.+++.++++++||+++++.-+.
T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 186 LDPEQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred CCHHHHHHHHHHCCCeEeeeeeEE
Confidence 578999999999999998776544
No 33
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=7.7e-14 Score=116.93 Aligned_cols=178 Identities=15% Similarity=0.203 Sum_probs=126.2
Q ss_pred HhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCCCCC-
Q 017595 187 LNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFERIP- 263 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p- 263 (369)
...+++ +.+++..++ .....+|+|+|||+|..+..|++++|+..++++|. +.|++.|+.+ ++++|..+|+.+-.|
T Consensus 13 ~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~ 90 (257)
T COG4106 13 DERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE 90 (257)
T ss_pred HhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC
Confidence 344444 457888888 88889999999999999999999999999999999 8888887654 899999999988444
Q ss_pred -CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh---hcCCccCCHH
Q 017595 264 -KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ---FSGGRERTTQ 339 (369)
Q Consensus 264 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~~t~~ 339 (369)
..|+++.+.+||.+|| ..++|.++...|.|||.|.+.=+-.-+.+............-+..... .......+..
T Consensus 91 ~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 91 QPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred Cccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 3499999999999955 578999999999999999987543222211111100000000111110 0123456899
Q ss_pred HHHHHHHHcCCcceeEEE------ecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYEC------FVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~------~~~~~~vi~~~~ 369 (369)
.|-++|...+-+ +.++. +.+..+|+++.|
T Consensus 169 ~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 169 AYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 999999887754 33332 347778887765
No 34
>PRK05785 hypothetical protein; Provisional
Probab=99.53 E-value=5.7e-13 Score=117.58 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=107.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~ 281 (369)
...+|||||||+|.++..+++.+ +.+++++|. +.+++.+++. ..++.+|+.+ |++.. |+|++..+||+++|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d-- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN-- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC--
Confidence 35799999999999999999887 578999999 9999988754 3467888887 77654 99999999999955
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH-hhcCC-------------ccCCHHHHHHHHHH
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM-QFSGG-------------RERTTQEFMALANE 347 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~-------------~~~t~~e~~~ll~~ 347 (369)
..++|++++++||| .+++++...++.........+....-+..+. .+ .+ ...+.+++.+++++
T Consensus 126 ~~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 126 IEKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred HHHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56899999999999 3556676555432111111111111111111 11 11 22488999999999
Q ss_pred cCCcceeEEEecCcee-EEEEeC
Q 017595 348 AGFNGVNYECFVCNFC-IIEFIK 369 (369)
Q Consensus 348 aGf~~~~~~~~~~~~~-vi~~~~ 369 (369)
+| ..++......+.+ +..++|
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEee
Confidence 84 7788877775544 555443
No 35
>PRK06202 hypothetical protein; Provisional
Probab=99.51 E-value=7.2e-13 Score=117.79 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=100.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCC--CCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPK--GDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~--~D~v~~~~v 273 (369)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++.+...+... +.+. .|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999998888754 56789999999 8888877653 456666665433 3332 399999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh------cC-----CccCCHHHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF------SG-----GRERTTQEFM 342 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~-----~~~~t~~e~~ 342 (369)
|||+++++...+|++++++++ |.+++.+...+.. .. ........... .+ .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~----~~----~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL----AY----ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH----HH----HHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999998888899999999998 5677776654321 00 00000000000 01 1346899999
Q ss_pred HHHHHcCCcceeEEEe
Q 017595 343 ALANEAGFNGVNYECF 358 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~ 358 (369)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998776654
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=5.6e-13 Score=118.90 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=103.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCC-CCCCC--CEEEeccccccCCh
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFE-RIPKG--DAILMKWILHNWDD 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d 279 (369)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.++.. +++.++.+|+.+ +++.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347999999999999999999999999999999 7777665543 578999999987 55543 99999999999854
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
...+|++++++|+|||++++.++...... ...... .. ......+.++|.++++++ |+.+.+.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~~---------~~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTLH---------ELRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCHH---------HHHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 56899999999999999999876432210 000000 00 134456889999999998 8876653
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.51 E-value=2.6e-13 Score=117.21 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=101.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DA 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 267 (369)
.+++.++ .....+|||+|||+|..+..++++ +.+++++|. +.+++.+++. -++.+...|+.. +++.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4444454 344689999999999999999986 468899998 7777765431 136777778765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 347 (369)
|++..++|++++++...++++++++|+|||++++.+.......... .+.....+.+++.++|.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~----------------~~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH----------------MPFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC----------------CCcCccCCHHHHHHHhC-
Confidence 9999999999888888999999999999999888776533211000 00112457899999985
Q ss_pred cCCcceeEE
Q 017595 348 AGFNGVNYE 356 (369)
Q Consensus 348 aGf~~~~~~ 356 (369)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58877765
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=3.3e-14 Score=107.63 Aligned_cols=88 Identities=22% Similarity=0.427 Sum_probs=76.0
Q ss_pred EEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---CCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHH
Q 017595 211 VDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCL 283 (369)
Q Consensus 211 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~ 283 (369)
||+|||+|..+..++++ +..+++++|. +.+++.+++ ..++.++.+|+.+ +++.. |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999999 8899999999 777776654 3567799999988 77754 999999999999 6678
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 017595 284 TLLKNCYEAIPENGKIII 301 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~lli 301 (369)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.49 E-value=7.5e-13 Score=116.65 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=101.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 276 (369)
....+|||||||+|.++..+++. +.+++++|. +.++..+++. .++.+..+|+.+.....|+|++..+++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 35689999999999999999876 458899998 8888766542 3789999998773333499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh--hcCCccCCHHHHHHHHHHcCCccee
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ--FSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
++++....+++++++.+++++.+.+.. .. ...... ..+.-.+... ......++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAP----KT---AWLAFL-KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---hHHHHH-HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 988888899999999988765444321 11 001000 0110000000 0012345899999999999999998
Q ss_pred EEEec
Q 017595 355 YECFV 359 (369)
Q Consensus 355 ~~~~~ 359 (369)
.....
T Consensus 204 ~~~~~ 208 (219)
T TIGR02021 204 EGLVS 208 (219)
T ss_pred eeccc
Confidence 86655
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.48 E-value=1e-12 Score=118.55 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=82.9
Q ss_pred CCcceEEEEcCChhH----HHHHHHHhCC-----CCeEEEcch-hHHHHhCCCC--------------------------
Q 017595 205 EQIKQLVDVGGGLGV----TLNIITSRYP-----HIEGVNFDL-PHVIQNAPSY-------------------------- 248 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 248 (369)
....+|+|+|||+|. +++.+++.++ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4666666655 578999999 8888877652
Q ss_pred -------CCceEEeCCCCC-CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 -------RGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 -------~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+|.|..+|+.+ +.+. . |+|+++++|||+++++..+++++++++|+|||+|++-..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 4433 3 999999999999988889999999999999999998654
No 41
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.47 E-value=5.2e-13 Score=111.13 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=118.0
Q ss_pred HHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCce
Q 017595 180 GVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVK 252 (369)
Q Consensus 180 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~ 252 (369)
..|++.|.....-....+.. +-+.++...+|+||||+|..-.- ..--|..+++.+|. +.+.+.+.+ +.++.
T Consensus 51 ~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 34555555544333333332 22245667899999999975433 22236788999999 777665433 35666
Q ss_pred -EEeCCCCC-C-CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHH
Q 017595 253 -HIGGNMFE-R-IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIML 327 (369)
Q Consensus 253 -~~~~d~~~-~-~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 327 (369)
|+.++..+ + ++++ |+|++..+|... +++++.|++++++|||||+++++|.+..+... +........+....
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~--~n~i~q~v~ep~~~ 204 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF--WNRILQQVAEPLWH 204 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchH--HHHHHHHHhchhhh
Confidence 88888887 4 5654 999999999988 77889999999999999999999998765421 11112222232222
Q ss_pred HhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeE
Q 017595 328 MQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCI 364 (369)
Q Consensus 328 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 364 (369)
..+ .|-..+++.|+ .+++|-|+..+......+..+
T Consensus 205 ~~~-dGC~ltrd~~e-~Leda~f~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 205 LES-DGCVLTRDTGE-LLEDAEFSIDSCKRFNFGTTW 239 (252)
T ss_pred eec-cceEEehhHHH-HhhhcccccchhhcccCCceE
Confidence 222 56666777775 457899999888776655443
No 42
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.47 E-value=3.3e-12 Score=108.35 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=116.7
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHH---HHh-CC--CCCCc-eEEeCCCCCC-C--C-------CC-CEEE
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHV---IQN-AP--SYRGV-KHIGGNMFER-I--P-------KG-DAIL 269 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~-a~--~~~rv-~~~~~d~~~~-~--p-------~~-D~v~ 269 (369)
+|||||+|||..+..++..+|++..---|. +.. +.. .. ..+++ .-+..|+.++ + + .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999998755554 222 111 11 12332 2334455542 2 2 12 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
+.+++|-.+.+.+..+++.+.++|+|||.|++.-++..++.-.+. -...+|.......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999998876532211 12234434333334677899999999999999
Q ss_pred CcceeEEEecCceeEEEEeC
Q 017595 350 FNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 350 f~~~~~~~~~~~~~vi~~~~ 369 (369)
|+.++.+.++...-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998777777765
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1.4e-14 Score=110.95 Aligned_cols=87 Identities=22% Similarity=0.396 Sum_probs=60.1
Q ss_pred EEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C---CceEEeCCCCCCCC--CCCEEEeccccccCC
Q 017595 211 VDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R---GVKHIGGNMFERIP--KGDAILMKWILHNWD 278 (369)
Q Consensus 211 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~ 278 (369)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ . ++++...+..+..+ ..|+|++.++|||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999999 8888777764 2 23444444444222 33999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEE
Q 017595 279 DEHCLTLLKNCYEAIPENGKI 299 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~l 299 (369)
++...+|+++++.|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 66779999999999999986
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=5.1e-13 Score=131.28 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=109.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC---CCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE---RIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~---~~p~~ 265 (369)
...+++.++ .....+|||||||+|.++..+++.+. +++++|. +.+++.+.. .+++.++.+|+.+ +++..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 445666665 44567999999999999999998854 6888898 777765542 3578999999964 44543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 --DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++..++||+++++..++|+++++.|+|||++++.|.+........ . . ......++..+|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999988889999999999999999999998754321100 0 0 01223456889999
Q ss_pred HHHHcCCcceeE
Q 017595 344 LANEAGFNGVNY 355 (369)
Q Consensus 344 ll~~aGf~~~~~ 355 (369)
+|.++||.....
T Consensus 169 ~f~~~~~~~~~~ 180 (475)
T PLN02336 169 VFKECHTRDEDG 180 (475)
T ss_pred HHHHheeccCCC
Confidence 999999987643
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=1.4e-12 Score=111.15 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=105.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC-CCEEEeccccccCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK-GDAILMKWILHNWD 278 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~ 278 (369)
...+|||+|||+|.++..+++..+ +++++|. +.+++.+++. .+++++.+|+.+..+. .|+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 347899999999999999999876 8899998 8877765542 3688899998774333 49999998887765
Q ss_pred hhH-------------------HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 279 DEH-------------------CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 279 d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++. ...+|+++.+.|+|||++++.+.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 321 35789999999999999999875321 145
Q ss_pred HHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
++.+++++.||+...+....-++-.+++||
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 678889999999999988888888888876
No 46
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=3.4e-12 Score=112.12 Aligned_cols=142 Identities=10% Similarity=0.127 Sum_probs=97.3
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH----hCCCCCCceEEeCCCCCC-----CCCC-CEE
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ----NAPSYRGVKHIGGNMFER-----IPKG-DAI 268 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p~~-D~v 268 (369)
.++ +.+..+|||+|||+|.++..+++..+..+++++|. +.+++ .+++.+++.++.+|...+ ++.. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 354 66778999999999999999999987678999999 75554 445557899999998753 2233 888
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCCEEEEE-eccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 269 LMKWILHNWDDE-HCLTLLKNCYEAIPENGKIIII-DRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 269 ~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+ |+.+++ ....+|+++++.|||||+++|. .. .+-+.... .. +..++..++++
T Consensus 146 ~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~d~~~~-------------------~~-~~~~~~~~~l~ 199 (226)
T PRK04266 146 Y-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSIDVTKD-------------------PK-EIFKEEIRKLE 199 (226)
T ss_pred E-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccccCcCC-------------------HH-HHHHHHHHHHH
Confidence 7 334333 3346789999999999999994 22 11000000 00 11234458999
Q ss_pred HcCCcceeEEEecCc---eeEEEEe
Q 017595 347 EAGFNGVNYECFVCN---FCIIEFI 368 (369)
Q Consensus 347 ~aGf~~~~~~~~~~~---~~vi~~~ 368 (369)
++||+.++....... +..+.++
T Consensus 200 ~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 200 EGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 999999999877533 4444443
No 47
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.45 E-value=3.7e-12 Score=114.68 Aligned_cols=148 Identities=13% Similarity=0.155 Sum_probs=105.5
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCCC--CE
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPKG--DA 267 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~ 267 (369)
....+++.++ .....+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++. ..+.++.+|+.+ +++.. |+
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 3455666665 445689999999999999888764 468999999 8888877654 446789999987 66653 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 347 (369)
|++..++|+.++ ...+|++++++|+|||++++..+.....+ ... ..+... ..........+.++|.+++..
T Consensus 107 V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--el~---~~~~~~--~~~~~~~~~~~~~~l~~~l~~ 177 (251)
T PRK10258 107 AWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP--ELH---QAWQAV--DERPHANRFLPPDAIEQALNG 177 (251)
T ss_pred EEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH--HHH---HHHHHh--ccCCccccCCCHHHHHHHHHh
Confidence 999999998754 56899999999999999999876543211 110 011000 000112334689999999998
Q ss_pred cCCcc
Q 017595 348 AGFNG 352 (369)
Q Consensus 348 aGf~~ 352 (369)
.|+..
T Consensus 178 ~~~~~ 182 (251)
T PRK10258 178 WRYQH 182 (251)
T ss_pred CCcee
Confidence 88764
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.44 E-value=1.2e-12 Score=112.45 Aligned_cols=125 Identities=15% Similarity=0.261 Sum_probs=96.1
Q ss_pred HhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCCC-CEEEe
Q 017595 199 DSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPKG-DAILM 270 (369)
Q Consensus 199 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~~-D~v~~ 270 (369)
..++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|...+++.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 55678999999999999999999999999999999 777776653 257899999886555443 99998
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
....+++ ..+++.+++.|+|||++++.....+ +.+++.+++++.||
T Consensus 104 ~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGV 149 (187)
T ss_pred CCCccCH-----HHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCC
Confidence 8765543 4689999999999999987543211 14567788999999
Q ss_pred cceeEEEe
Q 017595 351 NGVNYECF 358 (369)
Q Consensus 351 ~~~~~~~~ 358 (369)
+.+++...
T Consensus 150 ~~~~~~~~ 157 (187)
T PRK08287 150 SELDCVQL 157 (187)
T ss_pred CcceEEEE
Confidence 87776443
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=9.5e-13 Score=114.17 Aligned_cols=102 Identities=18% Similarity=0.346 Sum_probs=88.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCCCCCCC--CEEEeccccccCChh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFERIPKG--DAILMKWILHNWDDE 280 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~--D~v~~~~vlh~~~d~ 280 (369)
....+|||||||+|..+..+++..|+.+++++|+ +.+++.+++ .+++.+..+|+.++++.. |+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 3567899999999999999999889999999999 889998876 477899999998866543 999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 281 HCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 281 ~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+..++++++++++ +++++|.|...+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 8899999999997 4688888876543
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=1.9e-12 Score=122.84 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=114.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCCCCCCCCEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFERIPKGDAIL 269 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p~~D~v~ 269 (369)
...+++.+. .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ..+++...|+.+.-...|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 345556665 6677899999999999999998876 679999999 8887766542 247788888755212249999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
+..+++|.++.....++++++++|||||++++.+...+...... ..+.+- ..++++...+.+++...++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~---yifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK---YIFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee---eecCCCcCCCHHHHHHHHH-CC
Confidence 99999999887778999999999999999999887654321110 011111 1245788889999888766 58
Q ss_pred CcceeEEEec
Q 017595 350 FNGVNYECFV 359 (369)
Q Consensus 350 f~~~~~~~~~ 359 (369)
|.+.++....
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988776554
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.42 E-value=2.6e-13 Score=117.40 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=103.9
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------C----CceEEeCCCCCCCCCCCEEEecccc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------R----GVKHIGGNMFERIPKGDAILMKWIL 274 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----rv~~~~~d~~~~~p~~D~v~~~~vl 274 (369)
.+|||||||+|.++..|++.. ..++++|. +.+++.|+.+ . |+++.+.|.....+..|+|++..|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 679999999999999999886 67889998 8888887754 1 4677777776655557999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh-hHHHHHhhcCC----ccCCHHHHHHHHHHcC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT-DIIMLMQFSGG----RERTTQEFMALANEAG 349 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~----~~~t~~e~~~ll~~aG 349 (369)
+|. .+...+++.+.+.|||||+++|......-. .+ ....++ +........|. +..++++...++..+|
T Consensus 169 eHV--~dp~~~l~~l~~~lkP~G~lfittinrt~l---S~--~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 169 EHV--KDPQEFLNCLSALLKPNGRLFITTINRTIL---SF--AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHH---Hh--hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 999 556799999999999999999987743211 00 011111 12222222222 3468999999999999
Q ss_pred CcceeEEE
Q 017595 350 FNGVNYEC 357 (369)
Q Consensus 350 f~~~~~~~ 357 (369)
+++..+.-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 99877643
No 52
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=2.6e-12 Score=109.75 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=106.9
Q ss_pred eEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCC-----CCCC--CEEEeccc
Q 017595 209 QLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFER-----IPKG--DAILMKWI 273 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~-----~p~~--D~v~~~~v 273 (369)
+||+||||.|.+..-+++-.|+ +++..+|. |..++..++. .++..-..|+..+ .+.+ |++++.+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999888 99999999 8888877654 4566666666542 2233 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc---cCCHHHHHHHHHHcCC
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR---ERTTQEFMALANEAGF 350 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~t~~e~~~ll~~aGf 350 (369)
|...+++.....+++++++|||||.|++.|....+-.. ........++....+. +.|. -.+.+++.++|++|||
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq--lRF~~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ--LRFKKGQCISENFYVR-GDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH--HhccCCceeecceEEc-cCCceeeeccHHHHHHHHHhccc
Confidence 99999999999999999999999999999876433100 0000111122222221 1232 3589999999999999
Q ss_pred cceeE
Q 017595 351 NGVNY 355 (369)
Q Consensus 351 ~~~~~ 355 (369)
..++.
T Consensus 231 ~~~~~ 235 (264)
T KOG2361|consen 231 EEVQL 235 (264)
T ss_pred chhcc
Confidence 97764
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=2.3e-12 Score=118.12 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=98.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~ 277 (369)
...+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. ++++. |+|++..+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4569999999999999999886 468999999 7777655431 368888888876 45444 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
++++...++++++++|+|||+++++.....+..... .+....++.+|+.++++ +|++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 888889999999999999999888765433221100 00122357899999996 58888764
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.40 E-value=1.2e-12 Score=116.65 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=105.3
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh------CCC-CCCceEEeCCCCC-CCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN------APS-YRGVKHIGGNMFE-RIP 263 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~------a~~-~~rv~~~~~d~~~-~~p 263 (369)
.++.+...++.+ ..++|||||||+|.++..++.+.+. .++++|. +....+ ... ..++.+.+.-+.+ +..
T Consensus 103 KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~ 180 (315)
T PF08003_consen 103 KWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNL 180 (315)
T ss_pred hHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcccc
Confidence 345566666434 4589999999999999999998764 5888886 322222 111 2234444333333 322
Q ss_pred CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH
Q 017595 264 KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM 342 (369)
Q Consensus 264 ~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 342 (369)
.. |+|++-.||||..+ ....|++++..|+|||.|++-..+.+.+......... .+-.|. -.....|...+.
T Consensus 181 ~~FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~---rYa~m~---nv~FiPs~~~L~ 252 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED---RYAKMR---NVWFIPSVAALK 252 (315)
T ss_pred CCcCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC---cccCCC---ceEEeCCHHHHH
Confidence 33 99999999999944 5789999999999999999877776655332211110 000111 023467999999
Q ss_pred HHHHHcCCcceeEEEec
Q 017595 343 ALANEAGFNGVNYECFV 359 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~~ 359 (369)
.|++++||+.++++...
T Consensus 253 ~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHcCCceEEEecCc
Confidence 99999999999987654
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=2e-13 Score=104.98 Aligned_cols=88 Identities=19% Similarity=0.366 Sum_probs=72.7
Q ss_pred EEEEcCChhHHHHHHHHhC---CCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCC--CCEEEec-ccccc
Q 017595 210 LVDVGGGLGVTLNIITSRY---PHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPK--GDAILMK-WILHN 276 (369)
Q Consensus 210 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~--~D~v~~~-~vlh~ 276 (369)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++. .+++++..|+.+ ++.. .|+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 8888876542 489999999988 5433 3999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCC
Q 017595 277 WDDEHCLTLLKNCYEAIPENG 297 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG 297 (369)
+++++..++|+++++.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.39 E-value=5e-12 Score=112.22 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=98.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 276 (369)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. +++.+..+|+....+..|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998754 5899998 7777766542 4789999995333223499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH-HHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM-LMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
+++++...+++++.+.+++++ ++.... .. . ............. ..........+.++|.++++++||++.++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~-~i~~~~---~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSL-IFTFAP---YT--P-LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeE-EEEECC---cc--H-HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 998888999999999775443 333221 11 0 0000000000000 00001123457899999999999999998
Q ss_pred EEecC
Q 017595 356 ECFVC 360 (369)
Q Consensus 356 ~~~~~ 360 (369)
.+...
T Consensus 213 ~~~~~ 217 (230)
T PRK07580 213 ERISS 217 (230)
T ss_pred eeccc
Confidence 77653
No 57
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=1.2e-11 Score=116.07 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=85.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---------CCceEEeCCCCCCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~- 264 (369)
-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++.. .+++++..|.++.++.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4555565 33346999999999999999999999999999999 6777766531 3689999999885543
Q ss_pred -CCEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -GDAILMKWILHN---WDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~D~v~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|+++-.+|. .+++.+.++++.+++.|+|||+++++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 399999866653 455667899999999999999999884
No 58
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.36 E-value=8.3e-13 Score=113.59 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=101.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CC--ceEEeCCCCC-CCC--CCCEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RG--VKHIGGNMFE-RIP--KGDAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~r--v~~~~~d~~~-~~p--~~D~v~~~~vlh~ 276 (369)
...+|||||||.|.++..+++.. .++++.|. +..++.++.+ .. +++.....++ ... ..|+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 45899999999999999999986 88999999 8888888755 23 3355555444 222 3499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC-----ccCCHHHHHHHHHHcCCc
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG-----RERTTQEFMALANEAGFN 351 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~t~~e~~~ll~~aGf~ 351 (369)
.++++ .+++.|.+.+||||.+++........ +..-.......+.. ..+.| +...++|+..++.++|+.
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~--~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLR--IVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHH--hcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 97764 69999999999999999887753221 11000000111111 12232 345789999999999999
Q ss_pred ceeEEEe
Q 017595 352 GVNYECF 358 (369)
Q Consensus 352 ~~~~~~~ 358 (369)
+.....+
T Consensus 210 ~~~~~g~ 216 (243)
T COG2227 210 IIDRKGL 216 (243)
T ss_pred EEeecce
Confidence 8877554
No 59
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.35 E-value=2.3e-12 Score=109.82 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=94.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCc-eEEeCCCCC--CCCC-CCEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGV-KHIGGNMFE--RIPK-GDAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv-~~~~~d~~~--~~p~-~D~v~~~~vlh 275 (369)
...+.||+|+|.|..+..++...-+ ++-.+|. +..++.+++ .+++ ++.+.-+.+ |.+. .|+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4689999999999999987655322 4555555 666666652 2343 444444433 3332 39999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
|++|++.+.+|++|..+|+|+|.|+|-|.+...... .+| ...++-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~---------~~D-----~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD---------EFD-----EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---------EEE-----TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---------ccC-----CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999999999999999998654310 111 112456799999999999999999986
Q ss_pred E
Q 017595 356 E 356 (369)
Q Consensus 356 ~ 356 (369)
.
T Consensus 200 ~ 200 (218)
T PF05891_consen 200 E 200 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.34 E-value=1.2e-11 Score=105.32 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=72.5
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCC-CCCEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIP-KGDAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 277 (369)
..+|||||||+|.++..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ ... ..|+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 57999999999999999999999999999999 666554432 2579999999977 322 249998876 5543
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 357888999999999999764
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.34 E-value=1.5e-11 Score=109.44 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=97.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-C--CCC-CCEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-R--IPK-GDAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~p~-~D~v~~~~vl 274 (369)
....+|||||||+|.++..+++. ..+++++|. +..++.+++ ..++++...|+.+ + .+. .|+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988876 457888998 676665543 1356777777765 2 222 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh----cCCccCCHHHHHHHHHHcCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF----SGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~t~~e~~~ll~~aGf 350 (369)
++.++ ...+|+.+.+.|+|||++++....... ......... ......... ......+.++|.++++++||
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLNRNL---KSYLLAIVG-AEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecCCCh---HHHHHHHhh-HHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 99865 457899999999999999987643111 000000000 000110000 01234588999999999999
Q ss_pred cceeEEE
Q 017595 351 NGVNYEC 357 (369)
Q Consensus 351 ~~~~~~~ 357 (369)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9998754
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.33 E-value=7.5e-12 Score=112.82 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=79.6
Q ss_pred CCcceEEEEcCChhHHHHH--HHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCCC---CCCEEEe
Q 017595 205 EQIKQLVDVGGGLGVTLNI--ITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERIP---KGDAILM 270 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~p---~~D~v~~ 270 (369)
..+.+|+|||||.|.++.. ++..+|+.+++++|. +.+++.|++ .++++|+.+|..+..+ ..|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999997744333 334689999999999 888776654 1579999999987332 3499999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
. ++|+|+.++..++|+++++.|+|||.+++.-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999987888999999999999999998754
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=1.2e-11 Score=113.84 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=94.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------CCceEEeCCCCCCCCCCCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----------RGVKHIGGNMFERIPKGDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~~~p~~D~v~~~~v 273 (369)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 468999999 7787765432 2567888887542123499999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC------CccCCHHHHHHHHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG------GRERTTQEFMALANE 347 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~ 347 (369)
++|++++....+++.+.+ +.+|+. +|.. .+.. ........... .+++ ....+.+++++++++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~---~~~~~l~~~g~-----~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT---LYYDILKRIGE-----LFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc---hHHHHHHHHHh-----hcCCCCcCceeeeCCHHHHHHHHHH
Confidence 999998877788888875 455554 4432 1111 00000000000 0111 123479999999999
Q ss_pred cCCcceeEEEecC
Q 017595 348 AGFNGVNYECFVC 360 (369)
Q Consensus 348 aGf~~~~~~~~~~ 360 (369)
+||++.+..-..+
T Consensus 290 AGf~v~~~~~~~~ 302 (315)
T PLN02585 290 AGWKVARREMTAT 302 (315)
T ss_pred CCCEEEEEEEeec
Confidence 9999887655443
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.32 E-value=6e-11 Score=103.48 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=97.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------------------CCCCceEEeCCCCC-CC--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------------------SYRGVKHIGGNMFE-RI-- 262 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~~-- 262 (369)
....+|||+|||.|..+..|+++ +..++++|+ +..++.+. +..+|+++.+|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35579999999999999999986 567999998 66666531 12468999999998 32
Q ss_pred -CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHH
Q 017595 263 -PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 263 -p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 341 (369)
+..|+|+-+.++||++++.....++.+.++|||||++++.....+..... . --...+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 22399999999999999999999999999999999877776654321100 0 0123578899
Q ss_pred HHHHHHcCCcceeEEE
Q 017595 342 MALANEAGFNGVNYEC 357 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~ 357 (369)
.++|.. +|.+.....
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998853 566555443
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.32 E-value=5.9e-11 Score=110.75 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=84.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCC-CEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKG-DAI 268 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~v 268 (369)
-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++.. -..+++..|.+++.++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3344444 23346899999999999999999999999999999 7777766532 23567888887755544 999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWILHNW---DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+++..+|.. ..+...++++++.+.|+|||+++|+..
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999863 234567999999999999999998764
No 66
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.30 E-value=1.1e-10 Score=99.56 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=76.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCC-CCEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPK-GDAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~ 276 (369)
...+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +... .|+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 468999999999999999999999999999999 777776553 2469999999977 3332 399998752
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.....+++.+++.|+|||++++.+.
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2345789999999999999998864
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=5.4e-12 Score=105.69 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=95.0
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCCCCCCC--CEEEecc
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFERIPKG--DAILMKW 272 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~~--D~v~~~~ 272 (369)
.++ -....+++|+|||.|.++..|+.+.. +.+++|. +..++.+++ .++|+++..|+-+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 55668999999999999999999874 5777887 777776653 489999999998866654 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 273 ILHNWDD-EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 273 vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
|+|++++ ++...+++++.++|+|||.|++..... . .. . .=|.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd------~------~c-----~---~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD------A------NC-----R---RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H------H------HH-----H---HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC------C------cc-----c---ccCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999977620 0 00 0 123444677888888764 55
Q ss_pred ceeEEEe
Q 017595 352 GVNYECF 358 (369)
Q Consensus 352 ~~~~~~~ 358 (369)
.++.+..
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 5555444
No 68
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.26 E-value=2.6e-11 Score=111.74 Aligned_cols=105 Identities=15% Similarity=0.270 Sum_probs=82.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-----CCC--ceEEeCCCCCC--CC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-----YRG--VKHIGGNMFER--IP 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~r--v~~~~~d~~~~--~p 263 (369)
..+.+.++ ...+|||+|||+|..+..|+++.+ ..+++++|+ +.+++.+.+ .++ |.++.+|+.+. ++
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 457899999999999999999987 588999999 777766543 233 56789999862 32
Q ss_pred C-----C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 264 K-----G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 ~-----~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
. . .++++..++++++++++..+|++++++|+|||+++|.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 1 3556668999999999999999999999999998863
No 69
>PTZ00146 fibrillarin; Provisional
Probab=99.26 E-value=3.7e-10 Score=101.58 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=91.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hH----HHHhCCCCCCceEEeCCCCCCC------CCCCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PH----VIQNAPSYRGVKHIGGNMFERI------PKGDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~ 271 (369)
+....+|||+|||+|.++..+++.. +.-+++.+|+ +. +++.++..++|.++.+|+..+. +..|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5566899999999999999999986 3557889998 43 5566666689999999987532 223999877
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.. .+ ++...++.++++.|||||+++|......-+..+++. . .+ .+|. ++|+++||+
T Consensus 210 va---~p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe----------~--~f-------~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA---QP-DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPE----------V--VF-------ASEV-QKLKKEGLK 265 (293)
T ss_pred CC---Cc-chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHH----------H--HH-------HHHH-HHHHHcCCc
Confidence 64 22 345567778999999999999942211111110000 0 01 2344 788999999
Q ss_pred ceeEEEec
Q 017595 352 GVNYECFV 359 (369)
Q Consensus 352 ~~~~~~~~ 359 (369)
.++.+.+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99887765
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=2.9e-11 Score=106.92 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=97.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCC--C-CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIP--K-GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p--~-~D~v~~~~vl 274 (369)
...+|||+|||+|.++..+++..+ +++++|. +.+++.++.. .++.+...|+.+ +.+ . .|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999887654 5888888 6666655431 258888888765 222 3 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH-hhcC-----CccCCHHHHHHHHHHc
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM-QFSG-----GRERTTQEFMALANEA 348 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-----~~~~t~~e~~~ll~~a 348 (369)
|+..+ ...+|+++++.|+|||.+++........ ... .......+.. .... ....+.++|.++++++
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPK---SYL---LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCch---HHH---HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99954 4589999999999999998876532110 100 0000000110 0001 1234788999999999
Q ss_pred CCcceeEEE
Q 017595 349 GFNGVNYEC 357 (369)
Q Consensus 349 Gf~~~~~~~ 357 (369)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988753
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.24 E-value=1.2e-10 Score=104.65 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=93.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC--CCEEEeccccc-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK--GDAILMKWILH- 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~--~D~v~~~~vlh- 275 (369)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .+++.++.+|++++++. .|+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346999999999999999999999999999998 877776653 24799999999886543 39999854332
Q ss_pred -----cCChhH------------------HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 276 -----NWDDEH------------------CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 276 -----~~~d~~------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
.+..+. ...+++++.+.|+|||++++....
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~--------------------------- 219 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY--------------------------- 219 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------------------------
Confidence 222111 247899999999999998873210
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
...+++.++|+++||+.+++....
T Consensus 220 ---~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 ---DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ---cHHHHHHHHHHhCCCCceEEEeCC
Confidence 124568889999999988886654
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.23 E-value=1e-10 Score=93.11 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=77.5
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC---CCC-C
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER---IPK-G 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~-~ 265 (369)
+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +..++.+++ ..+++++.+|+... .+. .
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444444 44567999999999999999999999999999999 777766543 25789998887641 222 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
|+|++....+. ..++++.+++.|+|||++++.
T Consensus 90 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 99998765433 358999999999999998874
No 73
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.22 E-value=1.2e-10 Score=100.60 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=96.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC---CCCC--CCEE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+.+.+.++ ...+|||||||+|.++..+++. ...+++++|. +.+++.++. .+++++.+|+.+ +++. .|+|
T Consensus 5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 5 ESILNLIP---PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEE
Confidence 34444443 4579999999999999888765 3567889998 777776653 468888888865 2433 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH---------HHhhcCCccCCHH
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM---------LMQFSGGRERTTQ 339 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~~~t~~ 339 (369)
++.+++||+++ ...+|+++.+.++ .+++.-+.... +...........+ ....+..+..+.+
T Consensus 80 i~~~~l~~~~d--~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194)
T TIGR02081 80 ILSQTLQATRN--PEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194)
T ss_pred EEhhHhHcCcC--HHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence 99999999955 5678898887655 33332111000 0000000000000 0000123456899
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
++.++++++||++++.....
T Consensus 150 ~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 150 DFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHCCCEEEEEEEec
Confidence 99999999999999886653
No 74
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=1.8e-10 Score=96.42 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=100.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC---CCCC--CEEEeccccccCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER---IPKG--DAILMKWILHNWD 278 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~---~p~~--D~v~~~~vlh~~~ 278 (369)
+...+|||+|||.|.++..|.+. .++++.++++ +.-+..+.+ ..+.++.+|+.+. +|.. |.|+++.+|.++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~- 88 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV- 88 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH-
Confidence 36799999999999999888875 6899999888 554444442 4788999999873 5553 999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhH---------HHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDI---------IMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~---------~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
....++|+++.|. |.+.+|.=+-.. -+..+....+.- ..+..++|-+..|..++++++++.|
T Consensus 89 -~~P~~vL~EmlRV---gr~~IVsFPNFg-----~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 89 -RRPDEVLEEMLRV---GRRAIVSFPNFG-----HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred -hHHHHHHHHHHHh---cCeEEEEecChH-----HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 5566889888776 555554322110 011111111000 0011234566779999999999999
Q ss_pred CcceeEEEecCc
Q 017595 350 FNGVNYECFVCN 361 (369)
Q Consensus 350 f~~~~~~~~~~~ 361 (369)
+++++...+.+.
T Consensus 160 i~I~~~~~~~~~ 171 (193)
T PF07021_consen 160 IRIEERVFLDGG 171 (193)
T ss_pred CEEEEEEEEcCC
Confidence 999999887643
No 75
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=8.3e-11 Score=98.21 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=86.4
Q ss_pred EEcch-hHHHHhCCC---------CCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 234 VNFDL-PHVIQNAPS---------YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 234 ~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
+++|. +.+++.+++ ..+++++.+|+.+ +++.. |+|++..++|+++ +..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 36787 778776632 1369999999988 77653 9999999999995 45789999999999999999
Q ss_pred EEeccCCCCCcchHHHhhhhhhh-HHHHHhhcC-----------CccCCHHHHHHHHHHcCCcceeEEEecCcee
Q 017595 301 IIDRMPMVTPEATAAAREASMTD-IIMLMQFSG-----------GRERTTQEFMALANEAGFNGVNYECFVCNFC 363 (369)
Q Consensus 301 i~e~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 363 (369)
|.|...++.........+..... ......... ....+.+++.++|+++||+.++......+.+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 99998654311110000000000 000000000 1235899999999999999998877765433
No 76
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.21 E-value=4.3e-11 Score=101.03 Aligned_cols=99 Identities=19% Similarity=0.350 Sum_probs=79.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC-CC-CEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP-KG-DAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~~-D~v~~~~vlh~ 276 (369)
...+|||+|||+|..+..+++++|+.+++.+|. +.+++.++.. .+++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 467999999999999999999999999999999 7777766542 348999999999666 33 99999988876
Q ss_pred CCh---hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 277 WDD---EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 277 ~~d---~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
-.+ +-..++++.+.+.|+|||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 3467999999999999999976543
No 77
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=6e-10 Score=99.69 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=86.6
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC-CC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK-GD 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~D 266 (369)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++.+++. .+..+...|.+++... .|
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 35556676 44445999999999999999999999999999999 6667766653 3336788888886655 49
Q ss_pred EEEeccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 267 AILMKWILHNW---DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 267 ~v~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+|+++--+|.= ...-..++++.+.+.|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999999952 233345899999999999999998765
No 78
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=5.9e-10 Score=97.58 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=96.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------------------CCCCceEEeCCCCCCCC--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------------------SYRGVKHIGGNMFERIP-- 263 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~~~p-- 263 (369)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999986 568999999 66666431 12578999999998322
Q ss_pred --CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC--ccCCHH
Q 017595 264 --KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG--RERTTQ 339 (369)
Q Consensus 264 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~t~~ 339 (369)
..|+|+-+.++|+++.+...++++.+.++|+|||+++++....+.... +| ...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~--------------------~gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL--------------------AGPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC--------------------CCCCCCCCHH
Confidence 239999999999999999999999999999999976655444332210 11 235789
Q ss_pred HHHHHHHHcCCcceeEEE
Q 017595 340 EFMALANEAGFNGVNYEC 357 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~ 357 (369)
++.++|.. +|.+.....
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99999853 366665544
No 79
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.19 E-value=3.8e-10 Score=95.29 Aligned_cols=159 Identities=12% Similarity=0.166 Sum_probs=102.0
Q ss_pred hhhhcCchHHHHHHHHHHh----hhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhC
Q 017595 170 EYAGNDSRFNGVFNKAMLN----HTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNA 245 (369)
Q Consensus 170 e~~~~~~~~~~~~~~~m~~----~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 245 (369)
+.+.++|+....|..+.+. |-.-.++.+++.+...+....|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC----
Confidence 4456677776666666543 33345677777666445668999999999999977542 346777887221
Q ss_pred CCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh
Q 017595 246 PSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT 322 (369)
Q Consensus 246 ~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 322 (369)
+-.++..|+.. |++.. |+++++-.|... +...+|+++.|.|||||.|.|.|....
T Consensus 105 ----n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 ----NPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp ----STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred ----CCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 22477899977 88765 999999888653 467899999999999999999997421
Q ss_pred hHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 323 DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 323 d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
.-+.+++.+.+++-||+..........+.+.++.|
T Consensus 163 ------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 ------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 11466788889999999998776678888887765
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.19 E-value=5.1e-11 Score=103.43 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=80.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCC-CC-C--CCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNM-FE-R--IPK 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~-~~-~--~p~ 264 (369)
.+.+.++ . ...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .+++.++.+|+ .. + ++.
T Consensus 32 ~~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 109 (202)
T PRK00121 32 DWAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD 109 (202)
T ss_pred CHHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence 3444454 2 568999999999999999999999999999999 878776653 26799999999 43 3 443
Q ss_pred C--CEEEeccccccCC------hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 G--DAILMKWILHNWD------DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+ |+|++.+...... ......+|+++++.|+|||++++...
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 9998865543211 11236799999999999999998653
No 81
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.19 E-value=7.2e-11 Score=100.12 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC-C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~-D 266 (369)
..+++.++ .-.+.++||+|||.|..+..|+++. ..++.+|. +..++.+.+ .-.|+....|+.+ .+++. |
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 34555555 4467899999999999999999985 56777887 555554332 1248889999988 66655 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+|++..|+++++.+...++++++.+.++|||++++...+..++... ... ....+...|+...+.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~--------~~~--------~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC--------PSP--------FPFLLKPGELREYYA 160 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHTT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC--------CCC--------CCcccCHHHHHHHhC
Confidence 9999999999999999999999999999999998876653222100 000 122345678888885
Q ss_pred HcCCcceeE
Q 017595 347 EAGFNGVNY 355 (369)
Q Consensus 347 ~aGf~~~~~ 355 (369)
||++++.
T Consensus 161 --dW~il~y 167 (192)
T PF03848_consen 161 --DWEILKY 167 (192)
T ss_dssp --TSEEEEE
T ss_pred --CCeEEEE
Confidence 7887765
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=3.9e-10 Score=98.29 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=80.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC---------CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER---------IP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p 263 (369)
..++.+.+..++...+|||||||+|.++..++++. +..+++++|+.++ ...+++.++.+|+.+. ++
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhC
Confidence 34555555434566899999999999999999986 4578999999443 2236799999999873 33
Q ss_pred C-C-CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 264 K-G-DAILMKWILHNWDDEH---------CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 264 ~-~-D~v~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
. . |+|++....+....+. ...+|+.+++.|+|||++++..+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3 2 9999987776554321 246899999999999999987543
No 83
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.18 E-value=2.6e-09 Score=94.44 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=112.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCC------CCCc-eEEeCCCCCC--C----CCCCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPS------YRGV-KHIGGNMFER--I----PKGDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~rv-~~~~~d~~~~--~----p~~D~v 268 (369)
..+.+||||.||+|.+....++.+|. .++...|. |.-++..++ ...+ +|..+|.|+. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999998 78888898 555555443 2455 9999999982 2 334999
Q ss_pred EeccccccCChhHHH-HHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC-----ccCCHHHHH
Q 017595 269 LMKWILHNWDDEHCL-TLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG-----RERTTQEFM 342 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~-~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~t~~e~~ 342 (369)
+.+.++..++|.+.+ ..|+.+++++.|||+||-....... ..+.... ... .+.+| +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-----Qle~IAr----~Lt-sHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-----QLEMIAR----VLT-SHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-----chHHHHH----HHh-cccCCCceEEEecCHHHHH
Confidence 999999999997744 5799999999999998876532221 1111111 111 11122 468999999
Q ss_pred HHHHHcCCcceeE-EEecCceeEEEEeC
Q 017595 343 ALANEAGFNGVNY-ECFVCNFCIIEFIK 369 (369)
Q Consensus 343 ~ll~~aGf~~~~~-~~~~~~~~vi~~~~ 369 (369)
+|+++|||+.++. +...+-++|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999997765 33346677777664
No 84
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=3.8e-10 Score=101.38 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=89.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 277 (369)
...+|||||||+|.++..+++..+. +++++|. +.+++.+++. .++.+..+|. ..|+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH---
Confidence 5689999999999999887765543 6899999 7777766542 2233333221 34999875432
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
+....+++++.+.|+|||++++...... ..+++.+.+++.||+++++..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 3356789999999999999998754311 245678889999999999888
Q ss_pred ecCceeEEEEe
Q 017595 358 FVCNFCIIEFI 368 (369)
Q Consensus 358 ~~~~~~vi~~~ 368 (369)
.....+++.-+
T Consensus 239 ~~~W~~~~~~~ 249 (250)
T PRK00517 239 RGEWVALVGKK 249 (250)
T ss_pred eCCEEEEEEEe
Confidence 87777766543
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.17 E-value=9.1e-10 Score=94.41 Aligned_cols=133 Identities=18% Similarity=0.261 Sum_probs=95.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CC-ceEEeCCCCCCCCC--CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RG-VKHIGGNMFERIPK--GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~~~p~--~D~v~~~~vl 274 (369)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++. ++ +.++.+|+.++++. .|+|++...+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 4579999999999999999988 578899998 7777766321 22 88999999886554 3999887654
Q ss_pred ccCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc
Q 017595 275 HNWD-------------------DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE 335 (369)
Q Consensus 275 h~~~-------------------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 335 (369)
.... ......+++++.+.|+|||++++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------------------- 151 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------------------- 151 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------------------
Confidence 3311 1224578999999999999988764321
Q ss_pred CCHHHHHHHHHHcCCcceeEEEec---CceeEEEEeC
Q 017595 336 RTTQEFMALANEAGFNGVNYECFV---CNFCIIEFIK 369 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~~ 369 (369)
...+++.+++.++||++..+.... ...-+++.+|
T Consensus 152 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 123567889999999988765443 3344555554
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.17 E-value=9.3e-10 Score=100.40 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=96.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-C-CCEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-K-GDAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~-~D~v~~~~vl 274 (369)
.....+|||+|||+|..+..++..+|+.+++++|. +.+++.+++ ..++.++.+|++++.+ . .|+|++....
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 777665543 2579999999988654 2 3999875321
Q ss_pred ------ccCCh------------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 275 ------HNWDD------------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 275 ------h~~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
+.+.+ +...++++++.+.|+|||++++ +.. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g--~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG--Y---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC--c----------------------
Confidence 11111 2235789999999999999887 220 0
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEe-cCceeEEEEe
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECF-VCNFCIIEFI 368 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 368 (369)
...++|.+++++.||+.+++... .+...++.+.
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01345888999999997777543 3444455444
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=95.99 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=99.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC---CCCC--CCEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE---RIPK--GDAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~--~D~v~~ 270 (369)
.....+|||+|||+|..+..++.+.++++++++++ +.+.+.|++. +||++++.|+.. ..+. .|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44579999999999999999999999999999999 7777776542 799999999976 2222 399999
Q ss_pred ccccccCChh----------------HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc
Q 017595 271 KWILHNWDDE----------------HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR 334 (369)
Q Consensus 271 ~~vlh~~~d~----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 334 (369)
+--.+.-++. ....+++.+.+.|||||++.++....
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 8776654433 24578999999999999999876520
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEec
Q 017595 335 ERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
...+|.+++.+.+|...++..+.
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V~ 196 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFVY 196 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEec
Confidence 13468888888899988887664
No 88
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.10 E-value=1.8e-10 Score=99.45 Aligned_cols=98 Identities=14% Similarity=0.293 Sum_probs=75.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C---CCC-C-CEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R---IPK-G-DAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~---~p~-~-D~v~~~~ 272 (369)
...++||||||+|.++..+++++|+.+++++|. +.+++.+.+ .++++++.+|+.+ . ++. . |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 777766543 2689999999975 2 343 2 7777665
Q ss_pred ccccCChhH-------HHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 ILHNWDDEH-------CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 vlh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..+ |+... ...+++.++++|||||.|++...
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 433 22211 14689999999999999988653
No 89
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.10 E-value=4.8e-10 Score=102.04 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=73.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCC---eEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCCC--CEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHI---EGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPKG--DAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~ 277 (369)
...+|||||||+|.++..+++.+|.. .++++|+ +.+++.+++ .+++.+..+|..+ +++.+ |+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 888887754 3789999999887 76653 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+ ..+++++++|||||+++++.+.
T Consensus 161 ~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2367899999999999987653
No 90
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.09 E-value=3.4e-09 Score=97.04 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=75.1
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEec------
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMK------ 271 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~------ 271 (369)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. .+++++.+|++++++. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 7787766542 3599999999987654 3999875
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 272 -------WILHNWDD----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 272 -------~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+++|-|. +....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333321 1456899999999999997764
No 91
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=1.6e-09 Score=90.16 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=81.6
Q ss_pred HHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCCCE
Q 017595 198 LDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKGDA 267 (369)
Q Consensus 198 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~D~ 267 (369)
+.++. +.+..+++|||||+|..+.+++...|..+++.+|. +..++..+. .++++++.+|.-+ +.+..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 34454 66778999999999999999998899999999998 766665443 3899999999876 3444599
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+.... - ....+|+.+...|||||+|++.-..
T Consensus 106 iFIGGg-~-----~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGG-G-----NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 998887 2 2357999999999999999986554
No 92
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=7.6e-10 Score=96.33 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=75.8
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK-- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-- 264 (369)
.+++.+. .....+|||||||+|..+..+++..+ ..+++++|. +.+++.+++. .+++++.+|+.+.++.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 4445454 45668999999999999999998864 568999999 7777665531 3589999999874432
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++..++++++ +++.+.|+|||+|++.-
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 39999999887764 35678999999998753
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.05 E-value=5.4e-09 Score=98.55 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=94.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCC--C-CCEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIP--K-GDAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p--~-~D~v~~~~vlh 275 (369)
...+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. .+++++.+|+++ ..+ . .|+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 8888776542 479999999987 333 2 39999865321
Q ss_pred cCCh-----------------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 276 NWDD-----------------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 276 ~~~d-----------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
.-.+ +-.+++++.+.+.|+|||+++ .|.-..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li-lEiG~~------------------------- 384 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL-LEHGFD------------------------- 384 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE-EEECcc-------------------------
Confidence 1000 113477788888999999876 343210
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEE
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEF 367 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~ 367 (369)
..+.+.+++++.||+.+++...- +..-++.+
T Consensus 385 ----Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 385 ----QGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ----HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 14467888899999988876654 33444444
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=99.02 E-value=3.2e-09 Score=94.54 Aligned_cols=123 Identities=12% Similarity=0.147 Sum_probs=92.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCC-CCEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPK-GDAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~d~~ 281 (369)
...+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++ .++++++.+|+++ ..+. .|+|++...+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999999887789999999 888887765 3689999999988 3333 39999998888765432
Q ss_pred H------------------HHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 282 C------------------LTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 282 ~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
. .++++.+...|+|+|.+++.= ...+ . + ....+.++++.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y---ss~~----------~--------y--~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY---SGRP----------Y--------Y--DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE---eccc----------c--------c--cccCCHHHHHH
Confidence 2 356677788888998776661 1110 0 0 01136889999
Q ss_pred HHHHcCCc
Q 017595 344 LANEAGFN 351 (369)
Q Consensus 344 ll~~aGf~ 351 (369)
+++++||.
T Consensus 201 ~l~~~g~~ 208 (279)
T PHA03411 201 WSKQTGLV 208 (279)
T ss_pred HHHhcCcE
Confidence 99999986
No 95
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=93.95 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-C-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-K- 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~- 264 (369)
..+++.++ .....+|||||||+|.++..+++.. ++.+++++|. +.+++.+++ ..+++++.+|....++ .
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555555 6677899999999999999988875 4578999998 888876654 2579999999987432 2
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++....++.+ +.+.+.|+|||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 39999887766542 35667899999998854
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=1.5e-09 Score=99.18 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=75.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEecc---
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMKW--- 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~~--- 272 (369)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|++++++. .|+|++.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 8887766542 4799999999876654 39999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 273 ----------ILHNWDD----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 273 ----------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122111 1236889999999999998874
No 97
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.00 E-value=2.6e-09 Score=93.72 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=75.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC---
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP--- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--- 263 (369)
..+++.+. .....+|||||||+|.++..+++..+ +.+++++|. +.+++.+++ .++++++.+|..+..+
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 56778999999999999999998865 567899998 888776653 2679999999987332
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 264 KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
..|+|++.....+. .+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 23999988765544 34577899999998875
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=2.3e-09 Score=100.39 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=79.2
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKG 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~ 265 (369)
.+++.+. ......+||||||+|.++..++.++|+..++++|+ +.++..+.+ .+++.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4444454 23456999999999999999999999999999998 666555432 3689999999853 45544
Q ss_pred --CEEEeccccccCChhH-----HHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 --DAILMKWILHNWDDEH-----CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|.|++.+... |+... ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 8888654322 32221 14789999999999999988654
No 99
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=1.2e-08 Score=90.16 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=73.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC-C-CEEEeccccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK-G-DAILMKWILH 275 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~-D~v~~~~vlh 275 (369)
.....+|||+|||+|.++..++... ..+++++|. +.+++.+++. .++.++.+|+.+.++. . |+|++..-.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4456799999999999999988763 348899998 7777655432 3578899998775443 3 9999874332
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 276 NWDD-------------------EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 276 ~~~d-------------------~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.-++ .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 113568899999999999999876543
No 100
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.99 E-value=6.5e-09 Score=90.04 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=73.8
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCC---CCC-CC
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFER---IPK-GD 266 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p~-~D 266 (369)
.+. .....+|||+|||+|.++..++.. .+..+++++|. +.+++.+++ .+++.++.+|+.+. .+. .|
T Consensus 35 ~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 35 KLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 344 556789999999999999999876 46679999999 878775542 25789999998762 222 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+|++... ......+|+.+.+.|+|||++++
T Consensus 114 ~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 9987542 23456899999999999999986
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=2.6e-09 Score=92.38 Aligned_cols=101 Identities=15% Similarity=0.244 Sum_probs=76.9
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCC-CC
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIP-KG 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p-~~ 265 (369)
+++.++ .....+|||+|||+|.++..+++..|+.+++++|. +.+++.+++ .++++++.+|+.+ .+. ..
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 344444 55678999999999999999998889999999999 888776653 2578999999865 222 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654421 13356899999999999999998764
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.98 E-value=2.9e-09 Score=97.62 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=69.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC-CCEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK-GDAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~D~v~~~~vlh~ 276 (369)
...+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .++.+...+.....+. .|+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999888765 4458999999 7777766542 3566666664332233 3999986543
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+....+++++++.|+|||++++....
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 33467899999999999999987653
No 103
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.98 E-value=1.6e-08 Score=87.38 Aligned_cols=158 Identities=14% Similarity=0.176 Sum_probs=110.0
Q ss_pred hhhhhcCchHHHHHHHHHHhhh----hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHh
Q 017595 169 YEYAGNDSRFNGVFNKAMLNHT----SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQN 244 (369)
Q Consensus 169 ~e~~~~~~~~~~~~~~~m~~~~----~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 244 (369)
+..+..+|+....|..+.+... ...++.+++.+...+....|.|+|||-+.++... .-.+.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~-----~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSE-----RHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhcc-----ccceeeeeeec----
Confidence 3445667777777776655432 2345666666654457789999999999887621 12455666522
Q ss_pred CCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhh
Q 017595 245 APSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321 (369)
Q Consensus 245 a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 321 (369)
.+-+++.+|+.. |++.. |+++++-.|.. .+...++++++|.|+|||.+.|.|....
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------- 268 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------- 268 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh--------------
Confidence 244678889988 77654 99988877765 3467899999999999999999987421
Q ss_pred hhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 322 TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 322 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
..+...+...+...||.+.+..-....+...++.|
T Consensus 269 -------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11233477778888999888777777777777654
No 104
>PRK04457 spermidine synthase; Provisional
Probab=98.97 E-value=1.7e-09 Score=97.53 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC---CCCC-CCEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE---RIPK-GDAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p~-~D~v~~~~ 272 (369)
+.+.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+. .|+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999887654 2689999999865 2343 49998752
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 273 ILHN--WDDE-HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 273 vlh~--~~d~-~~~~~L~~~~~~L~pgG~lli~e 303 (369)
++. .+.. ....+++++++.|+|||++++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1111 12689999999999999998853
No 105
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=86.66 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=90.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------C-CCceEEeCCCCCC-CC-CC-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------Y-RGVKHIGGNMFER-IP-KG-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~~-~p-~~-D~v~~~~vl 274 (369)
...+|||+|||+|.++..|++..-.-..+++|. +..++-|+. . +.|+|...|+++| +. .. |+|+=...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999999854445777887 665554442 2 3499999999994 32 22 777544433
Q ss_pred cc------CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 275 HN------WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 275 h~------~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
.. -+.......+..+.+.|+|||+++|..- ..|.+|+.+.++.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcC
Confidence 32 2223335688999999999999998431 13688999999999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||.....+|.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99999888775
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.96 E-value=2.4e-09 Score=98.71 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=74.8
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEecc-----
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMKW----- 272 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~~----- 272 (369)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. ++++++.+|+++.++. .|+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 8888766542 4799999999876553 39999852
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 273 --------ILHNWDD----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 273 --------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246889999999999998876
No 107
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.95 E-value=2.7e-09 Score=94.37 Aligned_cols=141 Identities=23% Similarity=0.339 Sum_probs=85.5
Q ss_pred CcceEEEEcCC--hhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC----CCC--ceEEeCCCCCC---CC--C--C--C
Q 017595 206 QIKQLVDVGGG--LGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS----YRG--VKHIGGNMFER---IP--K--G--D 266 (369)
Q Consensus 206 ~~~~vLDvG~G--~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~r--v~~~~~d~~~~---~p--~--~--D 266 (369)
+..++|||||| |-..+.+++++ .|+.+++.+|. |.++.+++. .++ ..++.+|+.++ +. . . |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 77899999999 33455666554 89999999999 888887764 245 89999999983 22 1 1 3
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHH
Q 017595 267 -----AILMKWILHNWDD-EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQE 340 (369)
Q Consensus 267 -----~v~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 340 (369)
.+++..+||+++| ++...+++.++++|.||++|+|...+.+..+. .. .......... ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~--~~---~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE--RA---EALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH--HH---HHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH--HH---HHHHHHHHcC-CCCceecCHHH
Confidence 6899999999987 77899999999999999999999998654321 11 1111222211 22467899999
Q ss_pred HHHHHHHcCCccee
Q 017595 341 FMALANEAGFNGVN 354 (369)
Q Consensus 341 ~~~ll~~aGf~~~~ 354 (369)
+.++|. ||++++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999996 888664
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.95 E-value=2.5e-08 Score=89.47 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=73.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCCCCC----C-CCEEEeccccc-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFERIP----K-GDAILMKWILH- 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p----~-~D~v~~~~vlh- 275 (369)
...+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .+++++.+|+++.++ . .|+|++.--..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999999999999 8888776643 346899999887432 2 39998774321
Q ss_pred -----cCChh------------------HHHHHHHHHHHhCCCCCEEEEE
Q 017595 276 -----NWDDE------------------HCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 276 -----~~~d~------------------~~~~~L~~~~~~L~pgG~lli~ 302 (369)
..+++ -...+++.+.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 1347888899999999998864
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.94 E-value=1.3e-08 Score=100.06 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=90.9
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEecc----
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMKW---- 272 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~~---- 272 (369)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. +++.++.+|+++.++. .|+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 7787766542 5799999999875543 39999842
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 273 ----------ILHNWDD----------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 273 ----------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
++.+.|. +...++++.+.+.|+|||++++ |....
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~------------------------- 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFK------------------------- 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCc-------------------------
Confidence 1111111 1235688899999999998875 43110
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
..+.+.+++.+.||..+++...-
T Consensus 273 ----q~~~v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 273 ----QEEAVTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred ----hHHHHHHHHHhcCCCceEEEecC
Confidence 14457778888999988876654
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.93 E-value=6.6e-09 Score=79.02 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=75.1
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------CCCCceEEeCCCCCCC---CCC-CEEEeccccccC
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------SYRGVKHIGGNMFERI---PKG-DAILMKWILHNW 277 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~---p~~-D~v~~~~vlh~~ 277 (369)
+++|+|||.|.++..+++ .+..+++++|. +.....++ ...++.+..+|+.+.. +.. |++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999998 66655443 2367899999998832 233 999999999984
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.+....+++.+.+.|+|||++++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467789999999999999999875
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.92 E-value=1.1e-08 Score=87.93 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC---------CCC--
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER---------IPK-- 264 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p~-- 264 (369)
+-+.+.......+|||+|||+|.++..+++++ +..+++++|+.+.. ..+++.++.+|+.++ .+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 44444445677899999999999999999886 56789999994322 346788999998762 233
Q ss_pred CCEEEeccccc--------cC-ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 GDAILMKWILH--------NW-DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~D~v~~~~vlh--------~~-~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++....| +. ..+....+|+.+++.|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 39999854322 11 01223689999999999999999853
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.5e-08 Score=89.87 Aligned_cols=147 Identities=20% Similarity=0.236 Sum_probs=98.1
Q ss_pred HHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCce----
Q 017595 181 VFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVK---- 252 (369)
Q Consensus 181 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~---- 252 (369)
.|..+.+..+...++. ++.+. .+..++||||||+|.++++.++... .+++++|+ |..++.+++. .+|.
T Consensus 140 AFGTG~HpTT~lcL~~-Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 140 AFGTGTHPTTSLCLEA-LEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred ccCCCCChhHHHHHHH-HHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 4544444555555533 33332 3778999999999999999887754 46888888 7777766653 3343
Q ss_pred EEeCCCCC-CCC-CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 253 HIGGNMFE-RIP-KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 253 ~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
....+..+ +.. ..|+|+++= |- +-...+...+.+.++|||++++.-....
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------- 267 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGILED----------------------- 267 (300)
T ss_pred cccccchhhcccCcccEEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------
Confidence 22233333 121 239887653 32 2356899999999999999998664311
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEecCceeEE
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECFVCNFCII 365 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi 365 (369)
..+.+.+.+.++||.++++.......++.
T Consensus 268 ------q~~~V~~a~~~~gf~v~~~~~~~eW~~i~ 296 (300)
T COG2264 268 ------QAESVAEAYEQAGFEVVEVLEREEWVAIV 296 (300)
T ss_pred ------HHHHHHHHHHhCCCeEeEEEecCCEEEEE
Confidence 14567778889999999998876666654
No 113
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.87 E-value=4.1e-08 Score=85.73 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=82.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------------------CCCceEEeCCCCC-CC-C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------------------YRGVKHIGGNMFE-RI-P 263 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~d~~~-~~-p 263 (369)
....+||+.|||.|.-+..|+++. .+++++|+ +..++.+.+ ..+|++.++|+|+ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 355799999999999999999874 56899998 666665311 2579999999998 32 1
Q ss_pred ----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 264 ----KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 264 ----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..|+|+=+.+|++++++...+..+.+.++|+|||+++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2399999999999999999999999999999999999887643
No 114
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.86 E-value=2.1e-09 Score=84.67 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=74.6
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-C--CCCC--CEEEecccc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-R--IPKG--DAILMKWIL 274 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p~~--D~v~~~~vl 274 (369)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+.. |+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 788999998 777665543 2689999999987 3 4433 999998776
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWD------DEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~------d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
+... .+....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 1234689999999999999998764
No 115
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.85 E-value=8.5e-09 Score=93.76 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=97.5
Q ss_pred HHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCce
Q 017595 181 VFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVK 252 (369)
Q Consensus 181 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~ 252 (369)
.|..+-+..++..++.+.+ +. .+..+|||||||+|.+++..++... -+++++|+ |..++.++.. +++.
T Consensus 139 AFGTG~H~TT~lcl~~l~~-~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEK-YV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHH-HS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred cccCCCCHHHHHHHHHHHH-hc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 4555555666666655444 32 3457999999999999999888754 37888888 7777766542 3444
Q ss_pred EEeCCCCCCCC--CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 253 HIGGNMFERIP--KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 253 ~~~~d~~~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
+. . ..+.+ ..|+|+.+-.. +-...++..+.+.|+|||++++.-....
T Consensus 215 v~--~-~~~~~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~----------------------- 263 (295)
T PF06325_consen 215 VS--L-SEDLVEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE----------------------- 263 (295)
T ss_dssp ES--C-TSCTCCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------
T ss_pred EE--E-ecccccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------
Confidence 42 1 12232 23988855432 3456788899999999999998665421
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
..+++.+.+++ ||++++.....+..+++.-+|
T Consensus 264 ------~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 264 ------QEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ------GHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ------HHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 14567777776 999999988888777765443
No 116
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=87.27 Aligned_cols=143 Identities=20% Similarity=0.297 Sum_probs=91.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------C----------------------
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----------R---------------------- 249 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 249 (369)
+.....+|||||.+|.++..+++.|....+.++|+ +..++.|++. .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55779999999999999999999999889999999 7777777542 0
Q ss_pred --------CceE-------EeCCCCC-CCCCCCEEEec----cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 250 --------GVKH-------IGGNMFE-RIPKGDAILMK----WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 250 --------rv~~-------~~~d~~~-~~p~~D~v~~~----~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
++.+ ...||.+ ..+..|+|+|- +|=-+|.|+-...+|+++++.|.|||+|+ +|+-.-..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQpWks 214 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQPWKS 214 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-EcCCchHH
Confidence 1222 2223333 23445887554 33335788999999999999999999766 55432211
Q ss_pred CcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc--CCccee
Q 017595 310 PEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA--GFNGVN 354 (369)
Q Consensus 310 ~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 354 (369)
+........ ......---...++.+..++.+. ||+-++
T Consensus 215 -----Y~kaar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 -----YKKAARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -----HHHHHHHHH--HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 111111111 11011112234688888888776 565443
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.83 E-value=4.9e-08 Score=91.29 Aligned_cols=120 Identities=15% Similarity=0.023 Sum_probs=86.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCC-C-CEEEeccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPK-G-DAILMKWI 273 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~-~-D~v~~~~v 273 (369)
++...+|||+|||+|.++.+.+.. ..+++++|. +.++..++. .+++.+..+|+.+ +.+. . |+|++...
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 556789999999999999886654 568899998 777765443 1458899999988 5543 3 99998532
Q ss_pred cc-------cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 274 LH-------NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 274 lh-------~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
.. +...+...++|+.+++.|+|||++++.-+.. .+|.++++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------------------------~~~~~~~~ 305 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------------------------IDLESLAE 305 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------CCHHHHHh
Confidence 21 1111335789999999999999998865321 13556788
Q ss_pred HcCCcceeEEEe
Q 017595 347 EAGFNGVNYECF 358 (369)
Q Consensus 347 ~aGf~~~~~~~~ 358 (369)
++|| ++.....
T Consensus 306 ~~g~-i~~~~~~ 316 (329)
T TIGR01177 306 DAFR-VVKRFEV 316 (329)
T ss_pred hcCc-chheeee
Confidence 8999 7776654
No 118
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.82 E-value=1e-08 Score=87.15 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=98.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeC-CCCCCC-C-CCCEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGG-NMFERI-P-KGDAI 268 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~-d~~~~~-p-~~D~v 268 (369)
+.+...+ .....++||+|||||.++..|..... +.+++|+ ..|++.+.+. +.+..-.. +|..+. + ..|+|
T Consensus 116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred HHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccch
Confidence 3444443 33478999999999999999887754 4678888 7888887754 22211111 233322 2 24999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
....||-++ -....++--+...|+|||.+.+.-...++.... ... .......+..-+..+++..
T Consensus 193 ~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--------~l~------ps~RyAH~~~YVr~~l~~~ 256 (287)
T COG4976 193 VAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGF--------VLG------PSQRYAHSESYVRALLAAS 256 (287)
T ss_pred hhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCe--------ecc------hhhhhccchHHHHHHHHhc
Confidence 999999999 446789999999999999998876655543111 000 0011123566788999999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||+++++.++.
T Consensus 257 Gl~~i~~~~tt 267 (287)
T COG4976 257 GLEVIAIEDTT 267 (287)
T ss_pred CceEEEeeccc
Confidence 99999997764
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.3e-07 Score=85.91 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=88.4
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCCC-CEEEeccc--ccc--
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPKG-DAILMKWI--LHN-- 276 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~v~~~~v--lh~-- 276 (369)
+|||+|||+|..+..++..+|++++++.|+ |..++.|+.. .++.++.+|+|++.... |+|+++-- =..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 8888776542 45667777999876644 98877621 111
Q ss_pred -CCh------------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCC
Q 017595 277 -WDD------------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERT 337 (369)
Q Consensus 277 -~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 337 (369)
..+ +-..+++..+.+.|+|||.+++ |.... .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~-----------------------------q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT-----------------------------Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC-----------------------------c
Confidence 100 1355788889999999886664 33211 1
Q ss_pred HHHHHHHHHHcC-CcceeEEEecC
Q 017595 338 TQEFMALANEAG-FNGVNYECFVC 360 (369)
Q Consensus 338 ~~e~~~ll~~aG-f~~~~~~~~~~ 360 (369)
.+.+.++|.+.| |..+.+.....
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~ 266 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLF 266 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCC
Confidence 556888999999 66666655543
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.81 E-value=1.5e-08 Score=92.43 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCC--CC-C-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFER--IP-K-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~--~p-~-~D~v 268 (369)
+++.+||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|...- .+ . .|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3568999999999999999997655568999999 888877654 36899999998762 22 2 3999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 017595 269 LMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 269 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 302 (369)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433222221 357899999999999988865
No 121
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.81 E-value=3e-08 Score=86.82 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC---C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK---G 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~---~ 265 (369)
.++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ..+++++.+|..+.++. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4444454 56678999999999999988777753 6888887 777766543 25699999998775432 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776654 3456789999999988644
No 122
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.80 E-value=1.5e-08 Score=86.93 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=69.8
Q ss_pred CcceEEEEcCChhHH----HHHHHHh----CC-CCeEEEcch-hHHHHhCCCC---------------------------
Q 017595 206 QIKQLVDVGGGLGVT----LNIITSR----YP-HIEGVNFDL-PHVIQNAPSY--------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~----~~~l~~~----~p-~~~~~~~D~-~~~~~~a~~~--------------------------- 248 (369)
+..+|...||++|.- ++.+.+. .+ ++++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 668999999999963 3333441 12 467889998 7888876531
Q ss_pred -------CCceEEeCCCCC-CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 -------RGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 -------~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+|.|...|+.+ +.+. . |+|+|++||-+++++...+++++++++|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 469999999999 3332 3 999999999999999999999999999999999998643
No 123
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.78 E-value=8.5e-09 Score=67.36 Aligned_cols=51 Identities=51% Similarity=0.832 Sum_probs=42.7
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLV 93 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~ 93 (369)
.+|++|++|||||.|.+.| +++.|.+||+.++...+|.++..+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 46999999999999436667889999999985
No 124
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.77 E-value=6.8e-08 Score=84.45 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=96.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC---CC---------------CCCceEEeCCCCC-CCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA---PS---------------YRGVKHIGGNMFE-RIP 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~---------------~~rv~~~~~d~~~-~~p 263 (369)
.....+||..|||.|.-+..|+++. .+++++|+ +..++.+ .. ..+|++.++|||+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4566899999999999999999874 68999999 6666654 11 1468999999999 322
Q ss_pred C---CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc--cCCH
Q 017595 264 K---GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR--ERTT 338 (369)
Q Consensus 264 ~---~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~t~ 338 (369)
. .|+|+=+..|+.++++...+..+.+.++|+|||+++++....+.... .|. ..+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------~GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------EGPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------SSSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------CCcCCCCCH
Confidence 2 39999999999999999999999999999999995554443322110 111 2368
Q ss_pred HHHHHHHHHcCCcceeEEE
Q 017595 339 QEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~ 357 (369)
+++.++|. .+|++.....
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 7888776654
No 125
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.76 E-value=2e-07 Score=84.54 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=77.0
Q ss_pred CcceEEEEcCChhHH----HHHHHHhCC----CCeEEEcch-hHHHHhCCCC----------------------------
Q 017595 206 QIKQLVDVGGGLGVT----LNIITSRYP----HIEGVNFDL-PHVIQNAPSY---------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~----~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 248 (369)
+..+|...||++|.- ++.+.+..+ ++++++.|+ +.+++.|+.-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999963 333444332 467899998 7777765421
Q ss_pred ---------CCceEEeCCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 249 ---------RGVKHIGGNMFE-RIP--KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 249 ---------~rv~~~~~d~~~-~~p--~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+|.|..+|+.+ ++| .. |+|+|++||.|++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 357999999998 554 33 99999999999999999999999999999999888754
No 126
>PRK01581 speE spermidine synthase; Validated
Probab=98.74 E-value=4.8e-08 Score=90.35 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=74.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------------CCCceEEeCCCCCC---CCC-CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------------YRGVKHIGGNMFER---IPK-GD 266 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p~-~D 266 (369)
.++.+||+||||.|..+..+++..+..+++.+|+ +.+++.|+. .+|++++.+|..+- .+. .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4678999999999999999997666678999999 888887763 37999999999862 222 39
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 267 AILMKWILH---NWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 267 ~v~~~~vlh---~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
+|++...-. ....--...+++.+++.|+|||.+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999873210 0111123579999999999999988764
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.74 E-value=9.9e-08 Score=83.57 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=91.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCC-CCEEEeccccccCChhHHHH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPK-GDAILMKWILHNWDDEHCLT 284 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~d~~~~~ 284 (369)
...++||||.|.|..+..++..|.++.++....+. ..+.++ .+.+++..|-....+. .|+|.|-++|-.. +....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-r~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-RWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-HHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhcc--CCHHH
Confidence 45789999999999999999999987777766444 333332 3445554443332232 3999999999888 55679
Q ss_pred HHHHHHHhCCCCCEEEEEeccCC-----CCC--cchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 285 LLKNCYEAIPENGKIIIIDRMPM-----VTP--EATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 285 ~L~~~~~~L~pgG~lli~e~~~~-----~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
+|+.++++|+|+|++++.=..+- ... ...+.+ . +-..+...+-..+.+.+.|+.+||+++++..
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~-----l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----L-----LPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----h-----cCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999998887543221 100 001110 0 0001011111233344889999999999987
Q ss_pred ec
Q 017595 358 FV 359 (369)
Q Consensus 358 ~~ 359 (369)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 65
No 128
>PLN02366 spermidine synthase
Probab=98.71 E-value=5.7e-08 Score=89.26 Aligned_cols=99 Identities=19% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC--CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+++.+||+||||.|.++.++++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986633357888898 777776654 2689999999754 3332 4999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 269 LMKWILHNWDDE--HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 269 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e 303 (369)
++-..-...+.. -...+++.++++|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 875433322211 13578999999999999987654
No 129
>PRK03612 spermidine synthase; Provisional
Probab=98.70 E-value=1.4e-07 Score=93.44 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC-------------CCCceEEeCCCCC---CCCC-C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS-------------YRGVKHIGGNMFE---RIPK-G 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~---~~p~-~ 265 (369)
+++++|||||||+|..+.++++ +|. .+++.+|+ +.+++.+++ .+|++++.+|.++ ..++ .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999986 455 68999999 889887765 1689999999876 2233 3
Q ss_pred CEEEeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 DAILMKWILHNWDDE---HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 D~v~~~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+|++...-...+.. -..++++++++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987443221111 12468999999999999988764
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.66 E-value=7.9e-08 Score=87.30 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=73.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~v~ 269 (369)
+.+.+||+||||+|.++..+++..+..+++.+|+ +.+++.+++ .++++++.+|.++- .++ .|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3556999999999999999988766668888888 777776543 25788998887651 233 39999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 017595 270 MKWILHNWDDEH--CLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 270 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 302 (369)
+...-..-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 468899999999999998876
No 131
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.65 E-value=1.1e-07 Score=87.98 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=73.1
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC---C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP---K 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~ 264 (369)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4444444 556689999999999999999998764 46888898 777765543 2579999999876332 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 3999988665544 234667899999988853
No 132
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.64 E-value=1.5e-06 Score=77.77 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=81.4
Q ss_pred CcceEEEEcCChhH----HHHHHHHhCC-----CCeEEEcch-hHHHHhCCCC---------------------------
Q 017595 206 QIKQLVDVGGGLGV----TLNIITSRYP-----HIEGVNFDL-PHVIQNAPSY--------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 248 (369)
+..+|.-.||++|. +++.+.+.+| .+++++-|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 5666667775 478888898 7788776531
Q ss_pred --------CCceEEeCCCCCC--CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 --------RGVKHIGGNMFER--IPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 --------~rv~~~~~d~~~~--~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..|.|..+|..++ .+.. |+|+|++||=+++.+.-.+++++.+..|+|||.|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 2589999999983 3444 999999999999999999999999999999999998543
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.3e-07 Score=79.09 Aligned_cols=100 Identities=15% Similarity=0.264 Sum_probs=78.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK-- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~-- 264 (369)
...++..+. .+...+|||||||+|..+.-+++... +++.+++ +...+.|++ +.+|.++.+|-...+|.
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345556565 77889999999999999999998875 7777887 777777764 36799999999987665
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|.|+.....-..|+ .+.+-|+|||++++-..
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 399988877666643 24558999999999776
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=4e-07 Score=80.75 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=73.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCC---------CCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERI---------PKG 265 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~---------p~~ 265 (369)
..+.++|||||||+|..+.+++...+ +.+++.+|. +...+.+++. ++++++.+|+.+-+ +..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34678999999999999999988765 679999998 7777766542 68999999997621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+|++-. ..+.-..++..+.+.|+|||.+++-+..
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9997743 2344568899999999999976664443
No 135
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.7e-07 Score=79.60 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=85.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER-IP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~-~p 263 (369)
...|..... +....+|+|.|.|+|.++..|+.. .|.-+++.++. +..++.|++. ++|++..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 446666665 888899999999999999999974 78889999998 8888887653 5699999999884 33
Q ss_pred CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 264 KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 264 ~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.. |+|++ ++|+ .-.++.++.++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 33 88875 4544 45889999999999999999887653
No 136
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=80.92 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=69.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCC--CCC----CC---CCC-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGN--MFE----RI---PKG-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d--~~~----~~---p~~-D~v~~~~vl 274 (369)
....++|||||+|..++.+++.|.+ +++.|. +.+++.+++++++.....- +.+ ++ ++. |+|++...+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 3458999999999888888888765 677788 8999999987655433321 111 12 233 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|.++- .++.+.+++.|||.|.++.+-.
T Consensus 111 HWFdl---e~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 111 HWFDL---ERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred Hhhch---HHHHHHHHHHcCCCCCEEEEEE
Confidence 98843 5789999999998775544433
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.59 E-value=1.7e-07 Score=78.95 Aligned_cols=104 Identities=13% Similarity=0.240 Sum_probs=70.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC--C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG--D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 266 (369)
+.+++.++ +.+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 35556565 666789999999999999999988 457888887 666665543 3689999999988 55543 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+++- -++.+.+...++++.. .+.++|.+++...
T Consensus 80 ~vi~n~-Py~~~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNL-PYNISTPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred EEEECC-CcccHHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 776654 4445444333444321 1346777766544
No 138
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.55 E-value=9.3e-08 Score=82.94 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=74.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~- 264 (369)
...+++.+. +....+|||||||+|.++.-++... +.-+++.+|. +...+.+++. .+|.++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 446666676 7788999999999999999999885 4446888888 8877777642 5899999999875553
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|.|++.......|. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887765532 25567899999998544
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.53 E-value=5.5e-07 Score=78.54 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred cceEEEEcCChhHHHHHHHHhC---CCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCC-CCEEEeccccccCCh
Q 017595 207 IKQLVDVGGGLGVTLNIITSRY---PHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPK-GDAILMKWILHNWDD 279 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~d 279 (369)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++.. .++.++.+|+.. ++.. .|+|+++--.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 8888877654 679999999986 4433 399998876663321
Q ss_pred ----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 280 ----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 280 ----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.-...+++++.++++||+ +|+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 124568999999777766 443
No 140
>PLN02672 methionine S-methyltransferase
Probab=98.52 E-value=9.5e-07 Score=92.75 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=86.6
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------------------CCCceEEeCCCCCCCC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------------------YRGVKHIGGNMFERIP 263 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~rv~~~~~d~~~~~p 263 (369)
..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.++. .+||+++.+|+++.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999999999999 877776521 1479999999988553
Q ss_pred C----CCEEEeccc--c--------------------ccC-------C---hhH----HHHHHHHHHHhCCCCCEEEEEe
Q 017595 264 K----GDAILMKWI--L--------------------HNW-------D---DEH----CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 264 ~----~D~v~~~~v--l--------------------h~~-------~---d~~----~~~~L~~~~~~L~pgG~lli~e 303 (369)
. .|+|+++-- . |.+ . +++ .+++++.+.+.|+|||+++ .|
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-FN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-EE
Confidence 2 388876521 1 100 0 011 2678888888999999666 55
Q ss_pred ccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH-HHHHHcCCcceeEEEec
Q 017595 304 RMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM-ALANEAGFNGVNYECFV 359 (369)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~~ 359 (369)
.-.. ..+.+. ++|++.||+.++++...
T Consensus 278 iG~~-----------------------------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 278 MGGR-----------------------------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred ECcc-----------------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 4311 133466 57788888887776543
No 141
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.50 E-value=3.3e-07 Score=85.05 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=69.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----------------CCceEEeCCCCCC-----C-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------------RGVKHIGGNMFER-----I- 262 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~rv~~~~~d~~~~-----~- 262 (369)
...+|||+|||.|+=+.-...... -.++++|+ +..++.|+++ -...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 568999999998876655555422 36788998 6666655431 1257788888752 2
Q ss_pred CC--C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 263 PK--G-DAILMKWILHNW--DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 263 p~--~-D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+. . |+|.+.+.||+. +.+.++.+|+++.+.|+|||++|..-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999985 677788999999999999999998655
No 142
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=9e-07 Score=85.73 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=75.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCC---CC-C-CCEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFER---IP-K-GDAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p-~-~D~v~~~~ 272 (369)
.....+|||+|||+|..+..+++..++.+++++|. +..++.+++. -+++++.+|..+. .+ . .|.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45668999999999999999999988889999999 7777766532 2478899999762 22 2 39988422
Q ss_pred ------cccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 273 ------ILHN-------WDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 273 ------vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++.+ ...++ ..++|+++.+.|||||++++.....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2211 11121 2479999999999999999877544
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.47 E-value=1.1e-06 Score=85.26 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=78.5
Q ss_pred HhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C-CceEEeCCCCC-CC--C-C-C
Q 017595 199 DSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R-GVKHIGGNMFE-RI--P-K-G 265 (369)
Q Consensus 199 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~-~~--p-~-~ 265 (369)
..++ .....+|||+|||+|..+..+++..++.+++++|. +..++.+++. . ++.+..+|... +. + . .
T Consensus 232 ~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 232 TWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccccc
Confidence 3344 45568999999999999999999988789999999 7777655432 1 23446677664 22 2 2 3
Q ss_pred CEEEe------ccccccCChh--------------HHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 266 DAILM------KWILHNWDDE--------------HCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 266 D~v~~------~~vlh~~~d~--------------~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
|.|++ ..++++.|+- ...++|+++++.|||||+|+........
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99885 2466655431 1358999999999999999998776643
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.46 E-value=2.8e-07 Score=79.30 Aligned_cols=96 Identities=19% Similarity=0.379 Sum_probs=67.9
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------CCCCceEEeCCCCCC----CCCC--CEEEecccc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------SYRGVKHIGGNMFER----IPKG--DAILMKWIL 274 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~----~p~~--D~v~~~~vl 274 (369)
..+||||||.|.++..++..+|+..++|+|. ...+..+. ..+++.++.+|+..- ++.+ |-|++.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 4999999999999999999999999999998 55555443 248999999998771 3323 554433221
Q ss_pred ccCChhH-------HHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
-|+... ...+|+.+++.|+|||.|.+..-
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 122111 34899999999999999987653
No 145
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.43 E-value=6e-07 Score=76.11 Aligned_cols=94 Identities=15% Similarity=0.283 Sum_probs=69.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCC--ceEEeCCCCC--CCCCC--CEEEeccccc---
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRG--VKHIGGNMFE--RIPKG--DAILMKWILH--- 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~r--v~~~~~d~~~--~~p~~--D~v~~~~vlh--- 275 (369)
...-|||||||+|..+..+.+.. ...+++|+ |.|++.+.+. . =.++-+|+-+ |++.+ |-+|....+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~-e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER-ELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh-hhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 46899999999999988887654 67899999 9999988752 2 2577778777 44444 7665544433
Q ss_pred ------cCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 276 ------NWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 276 ------~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
|.|......++..++.+|++|++.++.
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 234444567899999999999998864
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=1.3e-06 Score=85.10 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=74.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC---CCC-CCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER---IPK-GDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~-~D~v~~~ 271 (369)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+++++.+|+.+. ++. .|+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999886 6789999999 777765543 14689999999762 333 3999864
Q ss_pred c------ccccCC-------hhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 W------ILHNWD-------DEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ~------vlh~~~-------d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
- ++.+.| ..+ ...+|+.+.+.|||||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 2 222111 111 2468999999999999998655443
No 147
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.40 E-value=5.6e-06 Score=70.74 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=89.0
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CCCC-----CCEEEeccccccCChh
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RIPK-----GDAILMKWILHNWDDE 280 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~-----~D~v~~~~vlh~~~d~ 280 (369)
..++|||||=+....+. .++-..++-+|+.+. .-.+...||++ |+|. .|+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999864443333 344556788887221 22467889998 7773 2999999999999866
Q ss_pred H-HHHHHHHHHHhCCCCCE-----EEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 281 H-CLTLLKNCYEAIPENGK-----IIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 281 ~-~~~~L~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
. .-++|+++++.|+|+|. |+|+-+.. +..|.+-.+.+.|.++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~----------------------Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP----------------------CVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch----------------------HhhcccccCHHHHHHHHHhCCcEEEE
Confidence 5 45999999999999999 77764321 11277778899999999999999998
Q ss_pred EEEec
Q 017595 355 YECFV 359 (369)
Q Consensus 355 ~~~~~ 359 (369)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 75543
No 148
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.38 E-value=1.8e-06 Score=70.11 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhC-CCCCCceEEeCCCCC-C--CC---C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNA-PSYRGVKHIGGNMFE-R--IP---K 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a-~~~~rv~~~~~d~~~-~--~p---~ 264 (369)
.+...+.++ +....-|||+|.|+|.++.+++++. ++-+.+.++. ++..... +.++.+.++.||.++ . .. .
T Consensus 37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 344455555 7788899999999999999999883 4555666665 5555544 446889999999987 3 22 2
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|.|++.--+-.+|-....++|+++...|++||.++-....
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 29999999999999888999999999999999998877665
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.8e-06 Score=83.90 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=76.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C----CC-C-CCEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R----IP-K-GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~----~p-~-~D~v 268 (369)
.....+|||+|||+|..+..+++... ..+++.+|. +..++.+++. .+|+++.+|..+ + .. . .|.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 44568999999999999999998864 468999998 7777665432 568999999876 3 11 2 3999
Q ss_pred Eec------cccccCChh-------H-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LMK------WILHNWDDE-------H-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~------~vlh~~~d~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++. .++++.++. + -.++|+++.+.|||||+|+...-..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 863 355554431 1 3588999999999999998776544
No 150
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=3e-06 Score=82.59 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=75.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC-C-CCEEEec--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP-K-GDAILMK-- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~D~v~~~-- 271 (369)
.....+|||+|||+|..+..+++..+ ..+++++|. +..++.+++. .+|+++.+|+.+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44567999999999999999888754 458999999 7777765532 468999999877323 2 3999852
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 272 ----WIL-------HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 272 ----~vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.++ ++++.++ -.++|.++.+.|+|||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 1223222 23689999999999999998776553
No 151
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.35 E-value=8.6e-07 Score=85.61 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=81.0
Q ss_pred ChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCc---CCcceEEEEcCChhHHHHHHHHhC----CCCeEEEcch-
Q 017595 167 GVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGF---EQIKQLVDVGGGLGVTLNIITSRY----PHIEGVNFDL- 238 (369)
Q Consensus 167 ~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 238 (369)
..|+-+++|+..-..|.+++.. .+.+..... .+...|+|||||+|-++...++.. ...+++.++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3577888898777777776532 233322211 135789999999999987766553 3567888876
Q ss_pred hHHHHhC----C--C-CCCceEEeCCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 239 PHVIQNA----P--S-YRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 239 ~~~~~~a----~--~-~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
|...... + . .++|+++.+|+.+ ..|.. |+|++-..=.....|-...+|....+.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433222 1 1 2789999999999 66765 99987766554444556678888899999998655
No 152
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.33 E-value=1.4e-06 Score=75.35 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=67.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---------------CCCceEEeCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---------------YRGVKHIGGNM 258 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 258 (369)
..+++.+. +.+...++|||||.|......+..++--+.+|+++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35555565 67788999999999999988887765445888887 655543321 25689999999
Q ss_pred CC-C-----CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 259 FE-R-----IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 259 ~~-~-----~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
.+ + +.++|+|++++.. |+++ ...-|++....||||.++|....+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 87 3 2346999999876 4444 4555677888899999988776666543
No 153
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.29 E-value=1.7e-06 Score=77.47 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=74.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhH-HHHhCCCC--------C----CceEEeCCCCC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPH-VIQNAPSY--------R----GVKHIGGNMFE-R 261 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~--------~----rv~~~~~d~~~-~ 261 (369)
.++..+. +....++|+|||-|+=+...-++.- -.+++.|+++ .++.|+++ + .+.|+.+|-+. .
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3444442 4567899999999887666654421 1478999944 47766642 1 36788888765 1
Q ss_pred ----C----CCCCEEEecccccc-C-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 262 ----I----PKGDAILMKWILHN-W-DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 262 ----~----p~~D~v~~~~vlh~-~-~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+ |..|+|.+.+++|+ | +.+.++.+|+++.+.|+|||.+|-.
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 2 22499999999997 3 5677889999999999999988754
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.28 E-value=3.2e-06 Score=74.02 Aligned_cols=96 Identities=18% Similarity=0.356 Sum_probs=69.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC--C--CCCC--CEEEeccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE--R--IPKG--DAILMKWI 273 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~--~p~~--D~v~~~~v 273 (369)
...+||||||.|.++..+++++|+..++|++. ..++..+.+ .+++.++++|... + ++.+ |-|++.+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 36899999999999999999999999999998 444443322 2589999999876 2 3442 55544332
Q ss_pred cccCChhH-------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 274 LHNWDDEH-------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 274 lh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e 303 (369)
--|+... ...+|+.+.+.|+|||.|.+..
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 1122111 2379999999999999998764
No 155
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.26 E-value=2e-06 Score=76.24 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p 263 (369)
+..|+..++ +....+|||.|.|+|.++..|+.. .|.-+++-+|. +..++.|++. ++|++...|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 345566666 778899999999999999999976 78889999998 7777766542 689999999975 343
Q ss_pred ----CC-CEEEeccccccCChhHHHHHHHHHHHhC-CCCCEEEEEeccC
Q 017595 264 ----KG-DAILMKWILHNWDDEHCLTLLKNCYEAI-PENGKIIIIDRMP 306 (369)
Q Consensus 264 ----~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L-~pgG~lli~e~~~ 306 (369)
.. |.|++ ++|++. ..+..+.++| +|||++.+.-++.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCH
Confidence 22 87765 454443 6789999999 8999999987764
No 156
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.24 E-value=6.1e-06 Score=79.87 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=74.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C-C-CC-CCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R-I-PK-GDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~-~-p~-~D~v~~~ 271 (369)
.....+|||+|||+|..+..+++.. +..+++.+|. +..++.+++. .+++++.+|..+ + . ++ .|.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4566799999999999999999886 4678999999 7777765532 468899999875 2 2 22 3998762
Q ss_pred ------ccccc-------CChh-------HHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 272 ------WILHN-------WDDE-------HCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 272 ------~vlh~-------~~d~-------~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.++.. ++.+ .-.++|.++.+.|||||+++...-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222 2211 125789999999999999877665543
No 157
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.23 E-value=4e-06 Score=75.82 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----------CCceEEeCCCCC---CCCC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------RGVKHIGGNMFE---RIPK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~---~~p~-~D~v~ 269 (369)
+.+++||-||+|.|.++.++++..+--+++.+|+ +.+++.++++ +|++++.+|..+ ..+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3557999999999999999999998889999999 9999877652 799999999877 3444 49998
Q ss_pred eccccccCChhH---HHHHHHHHHHhCCCCCEEEEE
Q 017595 270 MKWILHNWDDEH---CLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 270 ~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~ 302 (369)
+-..=. ..+.+ ...+++.|+++|+|+|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 765422 11100 258999999999999988887
No 158
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.20 E-value=1.1e-05 Score=73.14 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=73.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CC--CCCCEEEec-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RI--PKGDAILMK- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~--p~~D~v~~~- 271 (369)
.....+|||+|||+|..+..+++...+ ..++.+|. +..++.+++ ..+|.++..|... +. +..|.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 345679999999999999999988653 58999998 777765543 2568889888765 22 234988762
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 -----WILHN-------WDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 -----~vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.++.. +.+++ ..++|+++.+.|||||+|+...-..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 12221 22222 2469999999999999998665544
No 159
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.19 E-value=5.7e-06 Score=74.47 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=61.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKGD- 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D- 266 (369)
...+++.++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.++. .++++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 345555555 566789999999999999999999875 666666 555554432 3689999999988 555334
Q ss_pred -EEEeccccccCChhHHHHHHHHHHH
Q 017595 267 -AILMKWILHNWDDEHCLTLLKNCYE 291 (369)
Q Consensus 267 -~v~~~~vlh~~~d~~~~~~L~~~~~ 291 (369)
.++.++.-++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3444444444543 44555443
No 160
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.18 E-value=9.4e-06 Score=74.85 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC----CCCeEEEcch-hHHHHhCC------CCCCceE--EeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY----PHIEGVNFDL-PHVIQNAP------SYRGVKH--IGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~------~~~rv~~--~~~d~~~ 260 (369)
...+.+.++ ....|+|+|||+|.=+..|++.. ..++++.+|+ ...++.+. ..+.+.+ +.+|+.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 345555554 45689999999998777766664 3467999998 55555432 2366666 7889866
Q ss_pred C---CC-----C-CCE-EEeccccccCChhHHHHHHHHHHH-hCCCCCEEEEE
Q 017595 261 R---IP-----K-GDA-ILMKWILHNWDDEHCLTLLKNCYE-AIPENGKIIII 302 (369)
Q Consensus 261 ~---~p-----~-~D~-v~~~~vlh~~~d~~~~~~L~~~~~-~L~pgG~lli~ 302 (369)
. ++ . ..+ +++-.++.+++++++..+|+++++ .|+||+.|+|-
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2 22 1 244 566689999999999999999999 99999988873
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=5.6e-06 Score=71.74 Aligned_cols=99 Identities=11% Similarity=0.161 Sum_probs=77.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEe-CCCCCCC----CC-CCEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIG-GNMFERI----PK-GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~-~d~~~~~----p~-~D~v 268 (369)
..+.++|||||.+.|..+.+++...| +.+.+-+|. ++..+.|++. ++|+++. +|..+.+ .+ .|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999999999 889999999 8888877653 6688888 5876622 12 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
++-. ...+-.++|..+.+.|+|||.+++-+...+
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 8654 345556899999999999996665444443
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.18 E-value=3.5e-06 Score=71.16 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC---------CCCCceEEeCCCCCCC-----C-C-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP---------SYRGVKHIGGNMFERI-----P-K-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~rv~~~~~d~~~~~-----p-~-~D~v 268 (369)
....+|||+|||+|..+..++...+..+++.-|.+.+++..+ ...++.+...|..++. . . .|+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 356899999999999999999887777888888855655322 1267888888876522 2 2 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+.+.++|+- +....+++.+.+.|+|+|.+++....+
T Consensus 124 lasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999864 778899999999999999888777654
No 163
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.17 E-value=8.8e-06 Score=73.94 Aligned_cols=112 Identities=13% Similarity=0.328 Sum_probs=78.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC----CCceE--EeCCCCC---CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY----RGVKH--IGGNMFE---RI 262 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~rv~~--~~~d~~~---~~ 262 (369)
+.++...++.+ .+.+|||+|+|.|..+-++.+.++.+ +++.+|. +.+.+.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 44555555533 45799999999999888888888754 5789998 7776654431 11111 1112221 33
Q ss_pred CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 263 PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 263 p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+..|+|+++++|..++++....+++++.+.+.+ .|||+|+-.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 345999999999999988888999999888776 99999986554
No 164
>PLN02476 O-methyltransferase
Probab=98.17 E-value=7.8e-06 Score=73.70 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=74.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCC--------C-CC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERI--------P-KG 265 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~--------p-~~ 265 (369)
..+.++|||||+++|..+.+++...| +.+++.+|. +...+.|++. ++|+++.||+.+-+ . ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 44679999999999999999998865 567888888 7766666542 68999999987621 1 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+|++-. +...-..+++.+.+.|+|||.+++-+...
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 8887654 34566789999999999999766544433
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.16 E-value=1.1e-05 Score=74.49 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=91.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEe----CCCCCCC--CC--CCEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIG----GNMFERI--PK--GDAI 268 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~----~d~~~~~--p~--~D~v 268 (369)
...++||||||+|....-++.+.++++++++|+ +..++.|+.. ++|+++. .+++..+ +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999998888888889999999999 7777766531 3677754 2334332 22 3999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh
Q 017595 269 LMKWILHNWDDEH---CLTLLKNCY----------------EAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ 329 (369)
Q Consensus 269 ~~~~vlh~~~d~~---~~~~L~~~~----------------~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 329 (369)
+++--+|.-..+. ...-.+++. +++-+||.+-++..+..+.. .+..- ...+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~------~~~~~-~gwft-- 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK------AFAKQ-VLWFT-- 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH------HHHhh-CcEEE--
Confidence 9999887643331 111222222 33346666655555443310 00000 00011
Q ss_pred hcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 330 FSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 330 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
+.-++.-+.+.+.+.|++.|.+.++++.+.
T Consensus 265 smv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 265 SLVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred EEeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 113566689999999999999888887764
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.16 E-value=1.9e-06 Score=74.48 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC-------C--CCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI-------P--KGD 266 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-------p--~~D 266 (369)
.++++|||||+++|..+.++++..| +.+++-+|. |...+.|++ .++|+++.+|..+-+ + ..|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3678999999999999999999887 589999998 777776654 268999999997521 1 239
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|++-. ...+-...++.+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998765 34556788999999999999666555443
No 167
>PLN02823 spermine synthase
Probab=98.16 E-value=6.8e-06 Score=76.45 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=71.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCCC---CC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFERI---PK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~---p~-~D~v~~ 270 (369)
.+.+||.||||.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|.+.-+ ++ .|+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 568999999999999999998766678999999 888887764 268999999988722 22 399987
Q ss_pred ccccccCC--hh---HHHHHHH-HHHHhCCCCCEEEEE
Q 017595 271 KWILHNWD--DE---HCLTLLK-NCYEAIPENGKIIII 302 (369)
Q Consensus 271 ~~vlh~~~--d~---~~~~~L~-~~~~~L~pgG~lli~ 302 (369)
-.. ..+. .. -...+++ .+.+.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 631 1110 00 0246787 899999999987764
No 168
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=3.8e-06 Score=74.33 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=78.6
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEe
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILM 270 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~ 270 (369)
..+++..+ ....++|+|||.|-++.- +|.+..++.|+ ...+..+++.........|+.. |.+.. |..+.
T Consensus 37 ~qfl~~~~---~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 37 RQFLDSQP---TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHhccC---CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 34444443 578999999999976543 48889999999 5555555544443677788888 66543 99999
Q ss_pred ccccccCChhH-HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEH-CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
..++||+.... ...+++++.+.|+|||..+|.-+.
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 99999996444 569999999999999998876553
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.12 E-value=9.4e-06 Score=73.03 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=71.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~ 277 (369)
.+.|||||||+|.++.-.+... ..++..++-.++.+.|++ .+||.++.|-+.+ .+|+. |++|..-.-+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 4789999999999988776664 346777777888877764 2799999999999 88986 999987665555
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
-.+...+-.-.+++.|+|.|++.
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 44554444555789999999876
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.11 E-value=9.1e-06 Score=73.92 Aligned_cols=80 Identities=13% Similarity=0.227 Sum_probs=57.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCCC--CE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPKG--DA 267 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~ 267 (369)
..+++.+. .....+|||||||+|.++..++++.+ +++++|. +.+++.+++. ++++++.+|+.+ +++.. +.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 34555554 55668999999999999999999976 6777777 7777765442 689999999987 55432 55
Q ss_pred EEeccccccCC
Q 017595 268 ILMKWILHNWD 278 (369)
Q Consensus 268 v~~~~vlh~~~ 278 (369)
|+.+ .=++.+
T Consensus 109 vv~N-lPY~is 118 (272)
T PRK00274 109 VVAN-LPYNIT 118 (272)
T ss_pred EEEe-CCccch
Confidence 5544 334443
No 171
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=3.9e-05 Score=65.62 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=92.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCc--eEEeCCCCC-CCCCC--CEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGV--KHIGGNMFE-RIPKG--DAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv--~~~~~d~~~-~~p~~--D~v~~~~vlh~ 276 (369)
+....++|||||.|....++....- -+.+..|. ..+++.++.. +.+ ....+|-.. ++.+. |+|+.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 3556999999999999999988762 25788887 7788877754 443 445566554 66554 99999999996
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc------CCHHHHHHHHHHcCC
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE------RTTQEFMALANEAGF 350 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~t~~e~~~ll~~aGf 350 (369)
. .+...-+.+|..+|||+|.++ ...+-.+. .++ .....-+..+-. .+|.. ....++-.+|..|||
T Consensus 150 ~--NdLPg~m~~ck~~lKPDg~Fi-asmlggdT----LyE-LR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 T--NDLPGSMIQCKLALKPDGLFI-ASMLGGDT----LYE-LRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred h--ccCchHHHHHHHhcCCCccch-hHHhcccc----HHH-HHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCc
Confidence 6 445678899999999999665 33332221 111 112222222211 13321 145678889999999
Q ss_pred cceeE
Q 017595 351 NGVNY 355 (369)
Q Consensus 351 ~~~~~ 355 (369)
....+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 97655
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.10 E-value=1.5e-05 Score=72.01 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=59.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCCCE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKGDA 267 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D~ 267 (369)
...+.+.++ .....+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345555554 5566899999999999999999984 46788887 666665543 3689999999988 6665687
Q ss_pred EEeccccccCC
Q 017595 268 ILMKWILHNWD 278 (369)
Q Consensus 268 v~~~~vlh~~~ 278 (369)
|+++-- ++.+
T Consensus 95 Vv~NlP-y~i~ 104 (258)
T PRK14896 95 VVSNLP-YQIS 104 (258)
T ss_pred EEEcCC-cccC
Confidence 777544 4444
No 173
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.09 E-value=9e-06 Score=70.04 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=64.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCC--C-C-CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERI--P-K-GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~--p-~-~D~v~~~~vl 274 (369)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++ ..+++++.+|+++.+ . . .|+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 346999999999999997666653 57888888 766665443 257899999987632 2 2 3999988764
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYE--AIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~ 304 (369)
+. .....+++.+.+ .|+|++.++|-..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 223345555554 3789886665443
No 174
>PRK00536 speE spermidine synthase; Provisional
Probab=98.07 E-value=1.5e-05 Score=71.36 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=69.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCCC-CCCCEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFERI-PKGDAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~-p~~D~v~~~~ 272 (369)
+.+++||=||||.|..++++++. |. +++.+|+ +.+++.+++ .+|++++.. +.+.. ...|+||.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 47799999999999999999977 44 8988998 888887766 278888862 22222 2349999775
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. + + ..+.+.++++|+|||.++..-.
T Consensus 148 ~---~-~---~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 148 E---P-D---IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred C---C-C---hHHHHHHHHhcCCCcEEEECCC
Confidence 3 2 2 4678999999999998887654
No 175
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.04 E-value=2.2e-05 Score=74.87 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=68.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCCC------C-CCCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFERI------P-KGDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~------p-~~D~v~ 269 (369)
...+|||+|||+|.++...+.. ...+++.+|. +.+++.+++. ++++++.+|+++.. . ..|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999998876643 3448999998 7777765531 37899999998721 1 239999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.---..-+. ..-..+++.+.+.|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8744211111 1234566778999999999887653
No 176
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.03 E-value=9.5e-05 Score=64.99 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=83.6
Q ss_pred hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-h-HHHHhCCCCCCce-EEeCCCCC-C---CC
Q 017595 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-P-HVIQNAPSYRGVK-HIGGNMFE-R---IP 263 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-~~~~~a~~~~rv~-~~~~d~~~-~---~p 263 (369)
......+++.++......++||+|||+|.++..+++. +-.+++++|. + ++....+..+++. +...|+.. . ++
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcC
Confidence 3445566666652235579999999999999999987 3457899998 5 3444455566654 33335442 1 11
Q ss_pred ----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE-EEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCH
Q 017595 264 ----KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII-IIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTT 338 (369)
Q Consensus 264 ----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 338 (369)
..|+.+.+.. .+|..+.++|+| |.++ ++-+-.+-.+.. ........|-.. .....
T Consensus 139 ~d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~~-------~~~~~ 198 (228)
T TIGR00478 139 PDFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKEA-------IALAL 198 (228)
T ss_pred CCceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHHH-------HHHHH
Confidence 1265555443 257888999999 6544 333222111100 000000111000 11135
Q ss_pred HHHHHHHHHcCCcceeEEEec
Q 017595 339 QEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~~~ 359 (369)
+.+...+.+.||++..+.+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 199 HKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHcCCCeEeeEEECC
Confidence 566777888899988887654
No 177
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.01 E-value=8.4e-06 Score=77.74 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=67.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEc---ch-hHHHHhCCCCCCceEEeCCC---CCCCCCC--CEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNF---DL-PHVIQNAPSYRGVKHIGGNM---FERIPKG--DAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~rv~~~~~d~---~~~~p~~--D~v~~~~vlh~ 276 (369)
....+||||||+|.|+..++++. +..+-+ |. +..++.|.++ .|-.+-+-+ .-|+|.. |+|.++.++-.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999884 322221 22 3334444332 232222222 1167754 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
|...+ ..+|-++-|+|||||+++...+...
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 97665 4689999999999999998877554
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.01 E-value=1.9e-05 Score=81.14 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=70.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCC---CCC-CCEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFER---IPK-GDAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p~-~D~v~~~~ 272 (369)
...+|||+|||+|.++..++... ..+++.+|. +.+++.+++. ++++++.+|+++. .+. .|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 45799999999999999999863 346999999 7777766542 4799999998762 233 39999852
Q ss_pred ccc-------c-C-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 273 ILH-------N-W-DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 273 vlh-------~-~-~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
--. . + ....-..+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 210 0 0 0123457899999999999988764
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.00015 Score=59.99 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=85.3
Q ss_pred cceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCCCCC-CC-CEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFERIP-KG-DAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-~~-D~v~~~~vlh~~ 277 (369)
..-++|||||+|..+..|+.. .|++.+...|+ |..++...+ .-++..+..|+.+.+. +. |+++++--.--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 678999999999998888777 57888999999 777765432 2457888889988443 33 888887543322
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCH
Q 017595 278 DDEH-------------------CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTT 338 (369)
Q Consensus 278 ~d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 338 (369)
+++. ..++|..+-..|.|.|.+++.-... | ..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------------N----~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------------N----KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-------------------------c----CH
Confidence 2222 1244444455555666555543211 1 25
Q ss_pred HHHHHHHHHcCCcceeEEEec---CceeEEEEe
Q 017595 339 QEFMALANEAGFNGVNYECFV---CNFCIIEFI 368 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~ 368 (369)
+|+-+.+++-||.......-. ...+|+.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 677778888888876654432 445566554
No 180
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=5.8e-05 Score=66.40 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=66.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCC----CCCC--CCC--CEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNM----FERI--PKG--DAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~----~~~~--p~~--D~v 268 (369)
.....+||+|||+|..+..++...|+.+++.+|. +..+..+.+ .+++.++..++ +.+. +.+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999999 555655443 27888885544 4332 223 777
Q ss_pred Eec--cccccC------------C----------hhHHHHHHHHHHHhCCCCCEEEE
Q 017595 269 LMK--WILHNW------------D----------DEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 269 ~~~--~vlh~~------------~----------d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+++ ++.+.= | -+....++.-+.|.|+|||.+.+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 765 222210 0 01244677778899999996664
No 181
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.96 E-value=7.6e-06 Score=73.10 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC--CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+.+.+||=||+|.|..+.++++..+-.+++.+|+ |.+++.+++ .+|++++.+|... .... .|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3679999999999999999987766678999999 888887654 2699999999865 3344 4999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.-..--..+... ...+++.+++.|+|||.+++.-.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8643321111111 35899999999999999888763
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.95 E-value=3.8e-05 Score=70.37 Aligned_cols=89 Identities=12% Similarity=0.275 Sum_probs=61.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 264 (369)
+..+++... .....+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345555554 55678999999999999999998864 4666666 666554432 3689999999988 5655
Q ss_pred CCEEEeccccccCChhHHHHHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLL 286 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L 286 (369)
.|+|+. +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 587765 444555555444444
No 183
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.94 E-value=2.5e-05 Score=76.14 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=69.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC-----
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER----- 261 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----- 261 (369)
++.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344445444 4456799999999999999999886 57889998 777776654 25799999998652
Q ss_pred CCC--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 262 IPK--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 262 ~p~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
++. .|+|++.--- .....+++.+.+ ++|++.++|.-
T Consensus 363 ~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEEEe
Confidence 222 3998764332 122345555555 68888777643
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.93 E-value=2.4e-05 Score=69.55 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=72.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC----------CCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI----------PKG 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~----------p~~ 265 (369)
.+.++|||||+++|..+.+++... ++.+++.+|. +...+.|++ .++|+++.||+.+-+ +..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 357899999999999999999886 4678888888 766666543 278999999987621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+|++-.- ...-...++.+.+.|+|||.|+ +|.+.
T Consensus 158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv-~DNvl 192 (247)
T PLN02589 158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIG-YDNTL 192 (247)
T ss_pred cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEE-EcCCC
Confidence 88887643 3456688999999999999755 45544
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.92 E-value=2.3e-05 Score=77.40 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=69.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-C-----CCCCceEEeCCCCC---CCCCC--CEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-P-----SYRGVKHIGGNMFE---RIPKG--DAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~-----~~~rv~~~~~d~~~---~~p~~--D~v~~~~v 273 (369)
....+||||||.|.++..++..+|+..++++|. ...+..+ + ...++.++.+|+.. .++.+ |-|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999998 4433322 2 23688888888742 35544 66654432
Q ss_pred cccCChhH-------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 274 LHNWDDEH-------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 274 lh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e 303 (369)
= -|+... ...+|+.+++.|+|||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 122211 3489999999999999988754
No 186
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=0.00016 Score=60.39 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=87.5
Q ss_pred CcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcchhHHHHhCC-----------C--CCCceEEeCCCCC-CCCCC-C
Q 017595 203 GFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDLPHVIQNAP-----------S--YRGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 203 ~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------~--~~rv~~~~~d~~~-~~p~~-D 266 (369)
+++...+|+|+=.|.|.++.-++.. .|.-.+..+-..+...-+. + +.+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 4778899999999999999988876 3443443333222211111 1 2456666666555 43444 7
Q ss_pred EEEecccccc-----CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHH
Q 017595 267 AILMKWILHN-----WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 267 ~v~~~~vlh~-----~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 341 (369)
+++....-|. +....+.++.+.++++|||||.++|.|............ . .-..++..-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt---------~------~~~ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT---------I------TLHRIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh---------h------hhcccChHHH
Confidence 7766433332 234567899999999999999999999876554322110 0 0112357778
Q ss_pred HHHHHHcCCcceeE
Q 017595 342 MALANEAGFNGVNY 355 (369)
Q Consensus 342 ~~ll~~aGf~~~~~ 355 (369)
.+..+++||+..--
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 88889999997643
No 187
>PRK04148 hypothetical protein; Provisional
Probab=97.87 E-value=0.00013 Score=58.05 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=69.0
Q ss_pred HHHHhccCcCCcceEEEEcCChhH-HHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCC---C-CCEEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGV-TLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIP---K-GDAIL 269 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p---~-~D~v~ 269 (369)
.+.+.++ ..+..++||||||.|. ++..|.+. +..++++|. +..++.+++. .+.++.+|+|++-+ . +|+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 3444454 3345789999999996 77777765 467888888 7777666543 67999999999533 2 39988
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
... |+.+...-+.++++... .-++|.....+
T Consensus 83 sir-----pp~el~~~~~~la~~~~--~~~~i~~l~~e 113 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN--VPLIIKPLSGE 113 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC--CCEEEEcCCCC
Confidence 766 44556666666777654 55666655443
No 188
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.85 E-value=2.2e-05 Score=71.73 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=69.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEEeCCCCC-CCC-CC-CEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHIGGNMFE-RIP-KG-DAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p-~~-D~v~~~~vlh 275 (369)
..+.|||||||+|.++.--+++. -.+++++|...+++.+.+. +.|+++.|.+.+ .+| +. |+|++-+.=|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 45899999999999999888887 5678889988777766542 458999999888 677 44 9998887766
Q ss_pred cCChhH-HHHHHHHHHHhCCCCCEEE
Q 017595 276 NWDDEH-CLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 276 ~~~d~~-~~~~L~~~~~~L~pgG~ll 300 (369)
.+--+. ...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 542121 2233333357899999665
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.76 E-value=0.00029 Score=60.64 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCC---CCCCC--CEEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFE---RIPKG--DAIL 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~---~~p~~--D~v~ 269 (369)
.+...+|||...|-|.++++.+++.. ..++-+.- |.+++-+.-. .+++++.||..+ +++.. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 35678999999999999999998864 24444454 8888776543 468999999987 45543 8876
Q ss_pred ecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 270 MKW-ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 270 ~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
--- -|.+-..=-...+-++++|.|+|||+++=.-..... .+ .|+. -.....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ry------------rG~d-~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RY------------RGLD-LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------cc------------ccCC-hhHHHHHHHHhc
Confidence 211 011111112458899999999999998743322110 01 1222 255678899999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||.+++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988876544
No 190
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.75 E-value=3.2e-05 Score=65.83 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=68.5
Q ss_pred HhHHHHHHhccCcC--CcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC-------
Q 017595 192 IVMNRILDSYNGFE--QIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER------- 261 (369)
Q Consensus 192 ~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~------- 261 (369)
....++.+.++.++ ...++||+||++|.++..++++. +..+++++|+... .....+.++.+|+.++
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhh
Confidence 34567777776344 45899999999999999999997 7789999998433 1124555556665431
Q ss_pred --CC---CC-CEEEeccccccC---------ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 262 --IP---KG-DAILMKWILHNW---------DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 262 --~p---~~-D~v~~~~vlh~~---------~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.+ .. |+|++-.....- .-+.+...|.-+.+.|+|||.+++--..
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 13 888776622211 1123445566666789999988875543
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=6.9e-05 Score=63.40 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=67.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCC----------------CCCceEEeCCCCCCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPS----------------YRGVKHIGGNMFERIP- 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~~~p- 263 (369)
+....++||||+|+|.++..+... .+....++++. |++++.+++ ..++.++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 346789999999999999888754 33444488888 888776543 1578999999987433
Q ss_pred --CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 264 --KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 264 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
..|.|.+-.. +.++.+++.+-|+|||+++|--
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEee
Confidence 3498876632 3456778888999999999843
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.75 E-value=5.3e-05 Score=64.32 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=68.5
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH---hCC---CCCCceEEeCCCCC-CCCCC-CEEEeccccccCCh
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ---NAP---SYRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDD 279 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~---~~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d 279 (369)
+++|||+|.|.-+.-++-.+|+++++.+|. ..-+. .+. ..++++++.+.+.+ ..+.. |+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 899999999999999999999999999996 33222 221 13789999998887 33333 999999873
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
....++.-+...++|||+++..-.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 345788999999999999998653
No 193
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00025 Score=60.57 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=82.4
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CC-
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RI- 262 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~- 262 (369)
..+.+.+...++.+.+.-+++..+|+|+|+-.|.++..+++.. ++.+++++|+.++.. .++|.++.+|++. +.
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTL 100 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHH
Confidence 4445556677888888667888999999999999999888885 445689999844422 3569999999987 32
Q ss_pred -------CC-C-CEEEecccc--------ccC-ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 263 -------PK-G-DAILMKWIL--------HNW-DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 263 -------p~-~-D~v~~~~vl--------h~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+. . |+|++-..= +|. .-+-+...+.-+...|+|||.+++-.+-
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 2 888733221 221 1233567788888899999999987664
No 194
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.0001 Score=61.54 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=76.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCCCEEEeccccccCCh
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKGDAILMKWILHNWDD 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 279 (369)
+.++|+|+|||||.+++..+-..|. +++++|+ |+.++.+++. .+|+|+..|+.+--...|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 4478999999999999998776654 7788888 8888777653 5799999998774334477777655443311
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
..-+.+|.++.+.- -.++-+. + .-+.+.+....++.|+++...
T Consensus 124 haDr~Fl~~Ale~s---~vVYsiH----------------------------~--a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKALEIS---DVVYSIH----------------------------K--AGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHHHhh---heEEEee----------------------------c--cccHHHHHHHHHhcCCeEEEE
Confidence 11135566655542 1111111 1 115777888889999887665
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00025 Score=63.04 Aligned_cols=94 Identities=17% Similarity=0.363 Sum_probs=65.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHHHHh-CCCCCCceEEeCCCCC-CCCC--CCE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHVIQN-APSYRGVKHIGGNMFE-RIPK--GDA 267 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~-a~~~~rv~~~~~d~~~-~~p~--~D~ 267 (369)
++.+.+..+ .....+|||||+|.|.++..|+++...+.++-.|. .+.+.. ....++++++.+|+.+ +++. .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 556777665 55678999999999999999999998877777774 233332 2345899999999999 7875 323
Q ss_pred EEeccccccCChhHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKN 288 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~ 288 (369)
.+.++.=|+.+.+-..++|+.
T Consensus 98 ~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 98 KVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred EEEEcCCCcccHHHHHHHHhc
Confidence 333444455555444444443
No 196
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.72 E-value=0.0022 Score=57.60 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=90.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHH------HhCCC--------------------------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVI------QNAPS-------------------------------- 247 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~------~~a~~-------------------------------- 247 (369)
...+||-=|||.|.++.+++.+.-.+.+.-++.-+.+ ....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 4579999999999999999999555555444432211 11111
Q ss_pred -------CCCceEEeCCCCC-C-CC---CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchH
Q 017595 248 -------YRGVKHIGGNMFE-R-IP---KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATA 314 (369)
Q Consensus 248 -------~~rv~~~~~d~~~-~-~p---~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 314 (369)
..++....|||.+ . -+ .. |+|+.++.+-- .+.....|+.++++|||||..|=.-+..-....
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~--- 210 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEP--- 210 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCC---
Confidence 0257888999988 2 23 12 99988866653 366889999999999999965544444322110
Q ss_pred HHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 315 AAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 315 ~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
.. ......-+.|.+|++.+.++.||++++...
T Consensus 211 ---------~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 ---------MS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00 000123567999999999999999886544
No 197
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.71 E-value=0.00015 Score=70.60 Aligned_cols=98 Identities=14% Similarity=0.244 Sum_probs=66.0
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC-----CC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER-----IP 263 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-----~p 263 (369)
.+.+.+. ..+..+|||+|||+|.++..+++... +++++|. +.+++.+++ .++++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444343 45567999999999999999998753 6888898 777776654 26899999998652 11
Q ss_pred -C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 264 -K-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 264 -~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
. .|+|++.-.=-.+ ...+++.+. .++|++.+++
T Consensus 360 ~~~~D~vi~dPPr~G~----~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC----AAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCC----CHHHHHHHH-hcCCCEEEEE
Confidence 2 2888864321111 235566554 4789876665
No 198
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.70 E-value=0.00021 Score=61.84 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=88.0
Q ss_pred EEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC---CCEEEeccccccCC
Q 017595 210 LVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK---GDAILMKWILHNWD 278 (369)
Q Consensus 210 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~---~D~v~~~~vlh~~~ 278 (369)
|.||||-+|.+...|+++..--+++..|. +..++.+++ .++|+++.+|-++.++. .|+|+.+.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999998888999998 777776654 27899999998886554 378877775 4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
.....++|.+....++...+|++.-.. ....++.+|.+.||.+++=..+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~~-------------------------------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPNT-------------------------------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEESS--------------------------------HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCCC-------------------------------ChHHHHHHHHHCCCEEEEeEEE
Confidence 467889999888887766666653321 1456888999999998865443
Q ss_pred c---CceeEEEEe
Q 017595 359 V---CNFCIIEFI 368 (369)
Q Consensus 359 ~---~~~~vi~~~ 368 (369)
. -.+-||.+.
T Consensus 126 ~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 126 EENGRFYEIIVAE 138 (205)
T ss_dssp EETTEEEEEEEEE
T ss_pred eECCEEEEEEEEE
Confidence 3 346666654
No 199
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.68 E-value=0.0028 Score=58.43 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=75.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCC-C-C-CEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP-K-G-DAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p-~-~-D~v~~~~vlh~~~d~~ 281 (369)
....++|||||++|.++..++++. .+++.+|...+.......++|.+..+|.+...| . . |++++-.+- .
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve------~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE------K 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc------C
Confidence 466899999999999999999984 599999987777777778999999999988443 3 3 999988873 3
Q ss_pred HHHHHHHHHHhCCCC-CEEEEEeccCCCC
Q 017595 282 CLTLLKNCYEAIPEN-GKIIIIDRMPMVT 309 (369)
Q Consensus 282 ~~~~L~~~~~~L~pg-G~lli~e~~~~~~ 309 (369)
..++++-+.++|..| .+-.|...-.+..
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 447778888898877 4555666555543
No 200
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.65 E-value=0.0011 Score=59.74 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=97.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC---------CCCCceEEeCCCCCCCC----------CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP---------SYRGVKHIGGNMFERIP----------KG 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~rv~~~~~d~~~~~p----------~~ 265 (369)
++...||.+|||--.....+... ++++++.+|.|.+++.-+ ...+..++..|+..++. ..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998888877432 368999999998876322 13678999999874221 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHh-hhhhhhHHHHHh-hcCCccCCHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAR-EASMTDIIMLMQ-FSGGRERTTQEFM 342 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~~~~~~t~~e~~ 342 (369)
-++++-.++.+++.++..++|+.+.+...||+.++ .|.+.+-.. ..... ............ .+--...+.+++.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDG--EWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccch--hHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 57888999999999999999999999988888666 555443111 11000 000000000000 0001124689999
Q ss_pred HHHHHcCCcceeE
Q 017595 343 ALANEAGFNGVNY 355 (369)
Q Consensus 343 ~ll~~aGf~~~~~ 355 (369)
++|.+.||+..+.
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 9999999998765
No 201
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.65 E-value=0.00011 Score=68.26 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=59.2
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCC-CCEEEeccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPK-GDAILMKWILH 275 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~-~D~v~~~~vlh 275 (369)
..+|||+|||+|.++..++... .+++++|. +.+++.+++ .++++++.+|+.+ . ... .|+|++.---.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 4799999999999999999853 68899998 777776653 2579999999976 2 222 39988774311
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
... ..+++ ....++|++.+++
T Consensus 252 G~~----~~~~~-~l~~~~~~~ivyv 272 (315)
T PRK03522 252 GIG----KELCD-YLSQMAPRFILYS 272 (315)
T ss_pred Ccc----HHHHH-HHHHcCCCeEEEE
Confidence 111 12222 2334677665554
No 202
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.65 E-value=5.6e-05 Score=63.47 Aligned_cols=100 Identities=18% Similarity=0.308 Sum_probs=67.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CC------CCCceEEeCCCCCCCCCC-CEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PS------YRGVKHIGGNMFERIPKG-DAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~------~~rv~~~~~d~~~~~p~~-D~v~~ 270 (369)
....+.|||||-|.++..|+..||+.-+.|+.+ -.|.+.. +. ..++.+...+.+.-.|+. .--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346899999999999999999999999999887 5444322 11 256777777776644431 11111
Q ss_pred ccccccCChhH-----------HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEH-----------CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+-.++.+||+. ...++.+..=.|++||.++.+.-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 22222233322 346788888999999999887654
No 203
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=7.3e-05 Score=67.88 Aligned_cols=113 Identities=15% Similarity=0.326 Sum_probs=72.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCe-EEEcch-hHHHHhCCC---C---CCceEEeCCCCC---CCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIE-GVNFDL-PHVIQNAPS---Y---RGVKHIGGNMFE---RIP 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~---~---~rv~~~~~d~~~---~~p 263 (369)
..+....+.+ .+.+|||||.|.|.-+.++-..+|+++ ++.+.. |.+-+.... . ....-...|+.. ++|
T Consensus 103 ~~L~~~~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 103 DELQKRVPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHhCCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 3444444433 346799999999999988888899985 566665 333222111 1 122223334332 466
Q ss_pred CCCEEEeccccccCChhH----HHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 264 KGDAILMKWILHNWDDEH----CLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 264 ~~D~v~~~~vlh~~~d~~----~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
..|.|.+..++|-+-... ....++.+...+.|||.|+|+|.-.+.
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 668887777776653333 334899999999999999999986543
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.56 E-value=0.00014 Score=62.31 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=61.0
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C--CC-C-CEEEec
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I--PK-G-DAILMK 271 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~--p~-~-D~v~~~ 271 (369)
..++||++||+|.++.+++.+... +++.+|. +..++.+++. ++++++.+|.++. . .. . |+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 579999999999999999998763 7888887 6666544331 4789999999652 2 11 2 677665
Q ss_pred cccccCChhHHHHHHHHHH--HhCCCCCEEEEEec
Q 017595 272 WILHNWDDEHCLTLLKNCY--EAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~ 304 (369)
--... ....++++.+. .+|+++|.++ .|.
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 44332 22334444443 3577777544 554
No 205
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00024 Score=61.51 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=86.2
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH---hCC---CCCCceEEeCCCCC-C-CCC-CCEEEecccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ---NAP---SYRGVKHIGGNMFE-R-IPK-GDAILMKWILHN 276 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~---~~~rv~~~~~d~~~-~-~p~-~D~v~~~~vlh~ 276 (369)
..+++|||.|.|.-+.-++-.+|+++++.+|. ..-+. .+. ..++++++++-+.+ . .+. .|+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 68999999999999999998999999999996 33222 222 13789999998877 2 234 799998876
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
.....++.-+...+++||.++..-.. .++. -..+.+.....-|+.+.++.
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~--------------------------~~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL--------------------------AGKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH--------------------------hhhh-hHHHHHHHHHhhcCcEEEEE
Confidence 33457788889999999987643221 0110 13455556667788888887
Q ss_pred Eec
Q 017595 357 CFV 359 (369)
Q Consensus 357 ~~~ 359 (369)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 765
No 206
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.52 E-value=0.00025 Score=62.45 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=57.5
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHH---HHhCCCC---CCceEEeCCCCC-CCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHV---IQNAPSY---RGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~---~~~a~~~---~rv~~~~~d~~~-~~p~~ 265 (369)
.+..|.+.-+ .+....|||||+|||.++..+++....+-++..|.-.+ .+..+.. ..++++.||+++ ++|..
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 3456666665 77889999999999999999999987666666664222 2233322 579999999999 88877
Q ss_pred CEEEe
Q 017595 266 DAILM 270 (369)
Q Consensus 266 D~v~~ 270 (369)
|.++.
T Consensus 125 d~cVs 129 (315)
T KOG0820|consen 125 DGCVS 129 (315)
T ss_pred ceeec
Confidence 77765
No 207
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.43 E-value=0.0003 Score=64.13 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~ 260 (369)
.+++++.+. ......+||++||.|..+..+++.+| +.+++++|. |.+++.+++. +|++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 457777775 55567999999999999999999986 789999999 8888877542 589999999976
No 208
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.40 E-value=0.00046 Score=65.74 Aligned_cols=90 Identities=9% Similarity=-0.057 Sum_probs=62.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCC---C-CCCCEEEeccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFER---I-PKGDAILMKWILH 275 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~-p~~D~v~~~~vlh 275 (369)
..+|||++||+|.++..++... .+++++|. +..++.++.. ++++++.+|+.+. . ...|+|++.----
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 4699999999999999998653 57888888 7777655532 5789999998652 1 1249988774422
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+ ..++++.+. .++|++.++|..
T Consensus 312 G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 GI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 22 234555554 478887666643
No 209
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0018 Score=55.10 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-----CCCceEEeCCCCC---CCCCC--CEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-----YRGVKHIGGNMFE---RIPKG--DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d~~~---~~p~~--D~v~~~~vl 274 (369)
.+..|||.||=|-|.....+-++-|..+.+.--.|.|.++-+. ..+|.+..|-..+ .+|.+ |-|+.----
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 4678999999999999999999999888887777999887664 3678888885554 45543 766654432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+. ++...+.+.+.++|||+|++-....+..+
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 334 78889999999999999988877765433
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.29 E-value=0.0004 Score=57.74 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=73.9
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCCCEEEeccccccCCh
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKGDAILMKWILHNWDD 279 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d 279 (369)
..+.|+|.|+|.++.-.++... +++.+.. |....-+.+. .+++++.+|..+ ++..+|+|+|-..=..+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 6899999999999988777744 4555555 5555544432 689999999999 8877799998776555556
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+..+.++..+.+-||-++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 77788999999999999988765543
No 211
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.28 E-value=0.00032 Score=59.21 Aligned_cols=140 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCC---CCEEEeccccccCChhHH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPK---GDAILMKWILHNWDDEHC 282 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~---~D~v~~~~vlh~~~d~~~ 282 (369)
.+.++||+|.|.|..+..++..+.++-++.+. ..+..+.++. +..+... .+-+.. .|+|.|-++|.-. .+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc--~~p 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRC--FDP 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhh--cCh
Confidence 45899999999999999888776553333222 2222222221 2222211 111111 2999999998766 345
Q ss_pred HHHHHHHHHhCCC-CCEEEEEeccC--CC---CCcchHHHhhhhhhhHHHHHhhcCCccC--CHHHHHHHHHHcCCccee
Q 017595 283 LTLLKNCYEAIPE-NGKIIIIDRMP--MV---TPEATAAAREASMTDIIMLMQFSGGRER--TTQEFMALANEAGFNGVN 354 (369)
Q Consensus 283 ~~~L~~~~~~L~p-gG~lli~e~~~--~~---~~~~~~~~~~~~~~d~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~ 354 (369)
-++|+.++.+|+| .|++++.=..+ +. +....+. +... .+ .. +|+.+ ....+-++|+++||.+..
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn-----~L-e~-~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDN-----LL-EN-NGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchH-----HH-Hh-cCccHHHHHHHHHHHHHhcCchhhh
Confidence 7999999999999 78877643221 11 0000000 0000 11 11 44432 233467889999999888
Q ss_pred EEEec
Q 017595 355 YECFV 359 (369)
Q Consensus 355 ~~~~~ 359 (369)
.+..+
T Consensus 258 wTrlP 262 (288)
T KOG3987|consen 258 WTRLP 262 (288)
T ss_pred hhcCC
Confidence 77654
No 212
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.013 Score=49.68 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=95.3
Q ss_pred ccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-h----HHHHhCCCCCCceEEeCCCCCCCC-----CC-CEEE
Q 017595 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-P----HVIQNAPSYRGVKHIGGNMFERIP-----KG-DAIL 269 (369)
Q Consensus 201 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~v~ 269 (369)
++ +++..+||-+|..+|....+++...++-.+.++.. | +.+..+++++|+--+-+|+..|.. +. |+|+
T Consensus 72 ~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEE
Confidence 55 77889999999999999999999988666655554 3 446677888999999999987642 23 7776
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
.-=. .+.++.-+..++..-||+||++++.=-...-+...++.. .+ .++. +.|++.|
T Consensus 151 ~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~------------vf-------~~ev-~kL~~~~ 206 (231)
T COG1889 151 QDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE------------VF-------KDEV-EKLEEGG 206 (231)
T ss_pred EecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH------------HH-------HHHH-HHHHhcC
Confidence 4321 235567778889999999997776543332221111100 01 2233 4557889
Q ss_pred CcceeEEEec---CceeEEEE
Q 017595 350 FNGVNYECFV---CNFCIIEF 367 (369)
Q Consensus 350 f~~~~~~~~~---~~~~vi~~ 367 (369)
|++.++..+. ..++++.+
T Consensus 207 f~i~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVA 227 (231)
T ss_pred ceeeEEeccCCcccceEEEEE
Confidence 9999988775 44555544
No 213
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.26 E-value=0.001 Score=60.96 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=105.8
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC----C-----CCceEEeC
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS----Y-----RGVKHIGG 256 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~-----~rv~~~~~ 256 (369)
+...+++.-+.+.+.++ .+...|+-+|||--.-+..+-.. +++++..+|.|++++.-++ . .++++++.
T Consensus 74 ~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~ 150 (297)
T COG3315 74 LAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAV 150 (297)
T ss_pred HHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEec
Confidence 44444444344444443 33689999999977666654322 2588999999999885432 2 37999999
Q ss_pred CCCC-CCCC-----C------CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchH-HHhhhhhhh
Q 017595 257 NMFE-RIPK-----G------DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATA-AAREASMTD 323 (369)
Q Consensus 257 d~~~-~~p~-----~------D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d 323 (369)
|+++ +++. + -++++-.++.+++.+...++|+.+...++||..++.............. .........
T Consensus 151 Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (297)
T COG3315 151 DLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRG 230 (297)
T ss_pred cccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccc
Confidence 9995 5542 1 4889999999999999999999999999999877765531111100000 000000000
Q ss_pred HHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 324 IIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 324 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
......-.........++..++.+.||......
T Consensus 231 ~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 231 EDLDRGELVYFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred cccccccceeccCCHHHHHHHHHhcCEEEEecC
Confidence 000000001123458899999999999987763
No 214
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0065 Score=54.78 Aligned_cols=152 Identities=11% Similarity=0.173 Sum_probs=97.1
Q ss_pred HhHHHHHHhccC---cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchh------HHHHhCCC---------------
Q 017595 192 IVMNRILDSYNG---FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP------HVIQNAPS--------------- 247 (369)
Q Consensus 192 ~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~------~~~~~a~~--------------- 247 (369)
+.++.+...+|. -....+||-=|||.|.++..|+..++.+.+--+..= -++..++.
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 345566666652 123578999999999999999999888776322211 11111100
Q ss_pred ------------------------CCCceEEeCCCCC--CCCC----CCEEEeccccccCChhHHHHHHHHHHHhCCCCC
Q 017595 248 ------------------------YRGVKHIGGNMFE--RIPK----GDAILMKWILHNWDDEHCLTLLKNCYEAIPENG 297 (369)
Q Consensus 248 ------------------------~~rv~~~~~d~~~--~~p~----~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG 297 (369)
........|||.+ ..+. .|+|+.++.+-- .......|+.+++.|+|||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCc
Confidence 0234556789987 3333 288877765543 3667899999999999999
Q ss_pred EEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 298 KIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 298 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
..+=.-+..-....... . ....+-+.+.+++..+.+.-||++++-..+
T Consensus 291 vWiNlGPLlYHF~d~~g-------~------~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHG-------V------ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EEEeccceeeeccCCCC-------C------cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 87766665432211100 0 001245678999999999999998876543
No 215
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.14 E-value=0.0054 Score=52.96 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=85.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-h----HHHHhCCCCCCceEEeCCCCCCCC-----CC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-P----HVIQNAPSYRGVKHIGGNMFERIP-----KG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~v~~~ 271 (369)
+....+||-+|..+|....+++.... +-.+..++. | ..+..+++++||--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 66789999999999999999999854 666666666 4 446677778999999999987521 12 776654
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEecc--CCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM--PMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
-. + + ++++-++.++..-||+||.+++.=-. .+....+. . ...+-.+.|++.|
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~------------~----------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKARSIDSTADPE------------E----------VFAEEVKKLKEEG 204 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH------------H----------HHHHHHHHHHCTT
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH------------H----------HHHHHHHHHHHcC
Confidence 32 2 2 56777889999999999998876321 11110000 0 0122344567789
Q ss_pred CcceeEEEec
Q 017595 350 FNGVNYECFV 359 (369)
Q Consensus 350 f~~~~~~~~~ 359 (369)
|++.+...+.
T Consensus 205 ~~~~e~i~Le 214 (229)
T PF01269_consen 205 FKPLEQITLE 214 (229)
T ss_dssp CEEEEEEE-T
T ss_pred CChheEeccC
Confidence 9999998875
No 216
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.10 E-value=0.0022 Score=52.21 Aligned_cols=96 Identities=15% Similarity=0.258 Sum_probs=63.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-hHHHHhCCCC---------CCceEEeCCCCCC-CCCC-CE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFER-IPKG-DA 267 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~-~p~~-D~ 267 (369)
..+..+|+|+|||.|.++..++.. .++++++++|. +...+.+.+. .++.+..+++.+. .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 37889999998 6665554431 4566666665542 2222 77
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++.-|.--.+++ .+|+.+.+ |+...++.-++.
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEEEcCCc
Confidence 776555544433 55665555 666666655443
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.08 E-value=0.002 Score=59.16 Aligned_cols=96 Identities=20% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCC-------------CCCceEEeCCCCCCCC---C-C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPS-------------YRGVKHIGGNMFERIP---K-G 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~p---~-~ 265 (369)
++..++|-+|||.|..+++++ +||+. .++.+|+ |.|++.++. .+|++++..|.++-.. . .
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 466799999999999999987 57854 6889999 999998773 2799999999987321 2 2
Q ss_pred CEEEeccccccCChhH--------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEH--------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~--------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+||. +++|+. ...+-.-+++.|+++|.+++.....
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 77664 344433 3467778889999999999876543
No 218
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.07 E-value=0.0022 Score=57.96 Aligned_cols=95 Identities=15% Similarity=0.283 Sum_probs=63.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC----CCCCCceEEeCCCCC-CCCC---
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA----PSYRGVKHIGGNMFE-RIPK--- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~-~~p~--- 264 (369)
.+.+++.++ ..+...|||||+|.|.++..|++... ++++++. +..++.. ...++++++.+|+++ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 456666665 66789999999999999999999984 4555554 4444433 335899999999998 5554
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCC
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPE 295 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p 295 (369)
..+.+..+.=++.+ ..++.++...-+.
T Consensus 96 ~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 96 NQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred CCceEEEEEecccch----HHHHHHHhhcccc
Confidence 34444455444443 3566666664444
No 219
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.07 E-value=0.0047 Score=50.25 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=63.7
Q ss_pred EEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCC---CC---ceEEeCCCCC---CCCC--C-CEEEeccccc
Q 017595 210 LVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSY---RG---VKHIGGNMFE---RIPK--G-DAILMKWILH 275 (369)
Q Consensus 210 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~r---v~~~~~d~~~---~~p~--~-D~v~~~~vlh 275 (369)
++|+|||+|... .+....+. ..++++|. +.++...... .. +.+..+|... ++.. . |++.....+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 33333333 46777887 5555542221 11 5778777764 4443 3 8884444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+.. ....++++.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 443 678999999999999999998876544
No 220
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.95 E-value=0.0022 Score=61.11 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=68.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCC---CCCCEEEecccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERI---PKGDAILMKWILHN 276 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p~~D~v~~~~vlh~ 276 (369)
..+|||++||+|.++..++...+..++++.|. +..++.+++ .+++++..+|+..-+ ...|+|++.--
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 35899999999999999998877568899998 777776553 245678888886522 22499987541
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
-....++..+.+.++|||.+.|.
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12346788878889999999998
No 221
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.91 E-value=0.00033 Score=46.34 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=39.5
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+.|++.|...+ ++.|+.|||+++|+ +..-+.|+|..|+..|++.++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence 45788888754 47899999999999 999999999999999999864
No 222
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.81 E-value=0.0052 Score=52.74 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=55.6
Q ss_pred CcceEEEEcCChhHHHH---HHHHhC-CCCeEEEcch--hHHHHhCCCC----CCceEEeCCCCCC--C-C-------CC
Q 017595 206 QIKQLVDVGGGLGVTLN---IITSRY-PHIEGVNFDL--PHVIQNAPSY----RGVKHIGGNMFER--I-P-------KG 265 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~---~l~~~~-p~~~~~~~D~--~~~~~~a~~~----~rv~~~~~d~~~~--~-p-------~~ 265 (369)
++..|+|+|.-.|+-+. .+++.+ ++.+++++|+ ......+.+. +||+++.||-.++ + + ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 36899999966655544 445555 7788888887 3332333333 8999999998762 1 1 11
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
-++++-..-|.+ +...+.|+.....+.||++++|-|...
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 234444444555 667888999999999999999988754
No 223
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.76 E-value=0.065 Score=50.77 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=64.1
Q ss_pred CcceEEEEcCChhHHHHHH--------HHh-------CCCCeEEEcchhH-----HHHhC---C------------CCCC
Q 017595 206 QIKQLVDVGGGLGVTLNII--------TSR-------YPHIEGVNFDLPH-----VIQNA---P------------SYRG 250 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~-----~~~~a---~------------~~~r 250 (369)
+..+|+|+|||+|..+..+ .++ -|.+.+..-|+|. +.... + ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999665432 222 2567777777751 11110 0 0011
Q ss_pred ---ceEEeCCCCC-CCCCC--CEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 017595 251 ---VKHIGGNMFE-RIPKG--DAILMKWILHNWDD--E----------------------------------HCLTLLKN 288 (369)
Q Consensus 251 ---v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d--~----------------------------------~~~~~L~~ 288 (369)
+.-++|.|+. -+|.. +++++++.||.++. + +...+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888 47876 99999999997652 0 12234444
Q ss_pred HHHhCCCCCEEEEEeccCC
Q 017595 289 CYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 289 ~~~~L~pgG~lli~e~~~~ 307 (369)
=++=|.|||++++.=...+
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 4566899999999876654
No 224
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.74 E-value=0.0014 Score=61.69 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=77.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC--CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG--DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~v~~~~vl 274 (369)
....++|+|||.|.....+.. +.....++++. +.-+.++.. .....++.+|+.. +++.. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 345899999999998887654 45667788887 554444432 1345558889988 67764 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
.|.++ ..+++++++++++|||++++.+.+....
T Consensus 189 ~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 99955 5689999999999999999998876544
No 225
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.0035 Score=50.60 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=39.0
Q ss_pred CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 261 RIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 261 ~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+.. . |+|++.||+.|++-++-..+++.|++.|||||+|-|.-+
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 4543 3 999999999999989999999999999999999998765
No 226
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.0073 Score=52.63 Aligned_cols=97 Identities=19% Similarity=0.352 Sum_probs=75.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC----CeEEEcch-hHHHHhC-----CCCCCc--eEEeCCCCC---CCCCC---CE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH----IEGVNFDL-PHVIQNA-----PSYRGV--KHIGGNMFE---RIPKG---DA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a-----~~~~rv--~~~~~d~~~---~~p~~---D~ 267 (369)
+...++|+|.|+..=+..|+..+.. ++++-+|. ..++... +.++.+ .-+++|+.. .+|.+ =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 5789999999999888888877665 78899998 5555432 235654 445677765 24443 45
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+++...|-++++++|..+|.+++.+|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 67889999999999999999999999999888874
No 227
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.70 E-value=0.003 Score=56.33 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=61.0
Q ss_pred eEEeCCCCC--CC------CC-CCEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhh
Q 017595 252 KHIGGNMFE--RI------PK-GDAILMKWILHNWD--DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320 (369)
Q Consensus 252 ~~~~~d~~~--~~------p~-~D~v~~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 320 (369)
.++..|..+ ++ |+ .|+|++..+|.... .++-.+.++++.++|||||.|++........-
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y---------- 206 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYY---------- 206 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEE----------
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeE----------
Confidence 477888877 33 33 49999999998753 45567999999999999999999887542210
Q ss_pred hhhHHHHHhhcCC-----ccCCHHHHHHHHHHcCCcceeEEE
Q 017595 321 MTDIIMLMQFSGG-----RERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 321 ~~d~~~~~~~~~~-----~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
.. |+ -..+.+.+++.++++||.+.+...
T Consensus 207 --------~v-G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 207 --------MV-GGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --------EE-TTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --------EE-CCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 01 22 234899999999999999888764
No 228
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.67 E-value=0.0044 Score=52.55 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=63.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCe---------EEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIE---------GVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPK- 264 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~- 264 (369)
+++...|+|-=||+|.++++.+...++.. +++.|. +.+++.++. ...+.+...|+.+ +++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 66778999999999999999888877766 888888 777766543 2468999999988 6433
Q ss_pred C-CEEEeccccccC-Ch-----hHHHHHHHHHHHhCCCCCEEEE
Q 017595 265 G-DAILMKWILHNW-DD-----EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 265 ~-D~v~~~~vlh~~-~d-----~~~~~~L~~~~~~L~pgG~lli 301 (369)
. |+|++.--.-.- .. +--.++++.+.+.|+|...+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3 999877543321 21 1123678888888998433333
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.015 Score=49.08 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=71.5
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCCCEEEe
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKGDAILM 270 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~v~~ 270 (369)
.+...|++=..++|||+|.|+|..++.-++..- ..++..|. |...+..+-. -.+.+...|..-+-+..|+++.
T Consensus 70 ~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 70 YIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred HHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEe
Confidence 333344444679999999999998888766542 23444444 5444433321 3577777777663333499999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
..++++. ..+.++++-..+....|-.++|-++-.+.-
T Consensus 149 gDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 149 GDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred eceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 9999887 556677774444445677777777766554
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.032 Score=48.66 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=92.1
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHHHHhCCCCCCceEEeC-CCCC----CCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHVIQNAPSYRGVKHIGG-NMFE----RIPKG 265 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~-d~~~----~~p~~ 265 (369)
.....++.++-.-....+||||..||.|+-.++++.- ..++++|. .+.....+..+||..++. |+.. ++.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccC
Confidence 3456667676334678999999999999999998842 24555554 445555566678766665 5443 23223
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE-eccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII-DRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|++++--.+- ....+|-.+...++|++-++.. -+-.+..+... .......| +........++..
T Consensus 145 ~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v--~kkGvv~d-------~~~~~~v~~~i~~ 210 (245)
T COG1189 145 PDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQV--GKKGVVRD-------PKLHAEVLSKIEN 210 (245)
T ss_pred CCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhc--CcCceecC-------cchHHHHHHHHHH
Confidence 7877665542 2357899999999999865543 22221111000 00000000 0112234678888
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
++.+-||++..+.+.+
T Consensus 211 ~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 211 FAKELGFQVKGLIKSP 226 (245)
T ss_pred HHhhcCcEEeeeEccC
Confidence 9999999999887654
No 231
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.62 E-value=0.0037 Score=59.31 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=40.7
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
.++||++||+|.++..+++... +++++|. +.+++.+++. ++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988764 6888887 7777655532 578999998865
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.59 E-value=0.00055 Score=52.64 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEEcCChhHHHHHHHHhCCCC---eEEEcch-h---HHHHhCCC---CCCceEEeCCCCCC---CC-CC-CEEEeccccc
Q 017595 211 VDVGGGLGVTLNIITSRYPHI---EGVNFDL-P---HVIQNAPS---YRGVKHIGGNMFER---IP-KG-DAILMKWILH 275 (369)
Q Consensus 211 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~rv~~~~~d~~~~---~p-~~-D~v~~~~vlh 275 (369)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.++..+- ++ .. |+++.-.- |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 689999999999988876654 5788998 5 23333332 26899999998652 33 23 88876652 3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.. +....-++.+.+.|+|||.+++.|
T Consensus 80 ~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 33 667788999999999999888765
No 233
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.58 E-value=0.0012 Score=42.63 Aligned_cols=43 Identities=12% Similarity=0.317 Sum_probs=38.1
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
++.|...|.+ |+.++.||++.+++ .+..+.+.|+.|...|+++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5667788887 59999999999999 9999999999999999986
No 234
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.58 E-value=0.011 Score=57.82 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=68.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCC-CEEE--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKG-DAIL-- 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~-D~v~-- 269 (369)
.....+|||+++|.|.=+.+++....+ -.++..|+ +.-++..++ ..++.+...|... .++.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 346689999999999999999998754 47788887 555444332 2567888888654 23433 8887
Q ss_pred --ec--ccc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEe
Q 017595 270 --MK--WIL-------HNWDDEHC-------LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 270 --~~--~vl-------h~~~d~~~-------~~~L~~~~~~L~pgG~lli~e 303 (369)
|+ .++ ..|+.++. .++|..+.+.|||||+|+-..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 33 122 23333332 689999999999999885433
No 235
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.57 E-value=0.0099 Score=54.03 Aligned_cols=101 Identities=15% Similarity=0.267 Sum_probs=71.7
Q ss_pred cceEEEEcCChhHHHHHHHHhC--------------------CCCeEEEcch---hHHHHhCCC----C-----------
Q 017595 207 IKQLVDVGGGLGVTLNIITSRY--------------------PHIEGVNFDL---PHVIQNAPS----Y----------- 248 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 248 (369)
..+||-||||.|.-..+++..+ +.++++.+|+ ..|+..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999988777766655 2367788887 344442110 0
Q ss_pred --------CCceEEeCCCCC-CCC---------CCCEEEeccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 249 --------RGVKHIGGNMFE-RIP---------KGDAILMKWILHNW---DDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 249 --------~rv~~~~~d~~~-~~p---------~~D~v~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
-++.|...|+++ ..+ ..++|.+-+.++-+ +..+..++|.++-..++||..|+|+|.--.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 147999999987 221 12788777766643 456678999999999999999999997543
No 236
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.014 Score=48.76 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=69.7
Q ss_pred HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeC-CCCCC--------
Q 017595 192 IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGG-NMFER-------- 261 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~-d~~~~-------- 261 (369)
+..-++-+++.-++...+|||+||..|.++.-..++. |+--+.++|+-.+.. ..++.++.+ |+.++
T Consensus 55 FKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 55 FKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred hhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHH
Confidence 3333455555545677999999999999998888775 999999999844322 245556666 66543
Q ss_pred -CCCC--CEEEeccccccCC----------hhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 262 -IPKG--DAILMKWILHNWD----------DEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 262 -~p~~--D~v~~~~vlh~~~----------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|.. |+|++-+. ++-+ -+-|..+|--....++|+|.+++--+.-
T Consensus 131 ~lp~r~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred hCCCCcccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 2332 77665432 2211 1234455555566778999888765543
No 237
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.55 E-value=0.0052 Score=43.09 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHhChhHHHHhcCCCC-CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 47 AAELGVFEIIAKAGPGA-KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~-~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
..+-.|++.|...| + ++|+.+||+.+|+ +...+.++|..|...|+|.... ..+..|.++.
T Consensus 6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~----~~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG----GTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC----CCCCceEeec
Confidence 45667889998864 2 3999999999999 8999999999999999998742 1236777664
No 238
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.51 E-value=0.0034 Score=49.01 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 39 VLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 39 ~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
-.+.+|.--.++.|+..|... ++.++.+|++.+++ .+..+++.|+.|...|+|....+. ...+|++++.
T Consensus 8 ~~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~G---r~~~Y~l~~~ 76 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQG---KWVHYRLSPH 76 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEc---CEEEEEECch
Confidence 345566667899999999764 48999999999999 999999999999999999865311 1235887653
No 239
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.51 E-value=0.0039 Score=46.33 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=47.9
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
-+.|++.|...+ ++.|+.+||+.+|+ +..-+.|+|+.|+..|++.... ..+.|.+++..
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~-----~~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG-----QNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC-----CCCceeecHHH
Confidence 356788887742 48999999999999 9999999999999999998741 34678887643
No 240
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.43 E-value=0.0014 Score=56.40 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=62.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC--CCEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK--GDAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~v~~~~vl 274 (369)
....+|+|.-||.|.++..+++..+..+++..|+ |...+..++ ..++..+.+|..+-.+. .|-|++...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp- 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP- 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh-
Confidence 4568999999999999999999777788999999 877765432 26789999998773323 387766543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEE
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKI 299 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~l 299 (369)
+.+..+|..+.+++++||.+
T Consensus 179 -----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 179 -----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCcEE
Confidence 23346888899999998865
No 241
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.43 E-value=0.0026 Score=43.53 Aligned_cols=54 Identities=9% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+.+|.--.++.|++.|... +|.|+.+||+.+|+ .+.-+.+.|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3455556788899999443 59999999999999 999999999999999999864
No 242
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.39 E-value=0.097 Score=45.17 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=70.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCC-C-C-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIP-K-G-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-~-~-D~v~~~~vl 274 (369)
...++.||||-+|.+.+.+.+.++...++..|. +...+.+.+ .+++++..+|-+.++. + . |+++.+.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 334599999999999999999999999999998 766665543 2789999999988653 3 2 88876664
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
.-.....+|++-.+-|+.=-++++
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEE
Confidence 446678889888888875445665
No 243
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0019 Score=52.47 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=68.2
Q ss_pred cceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCC---------CCCCceEEeCCCCCC---CCC--CCEEEe
Q 017595 207 IKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAP---------SYRGVKHIGGNMFER---IPK--GDAILM 270 (369)
Q Consensus 207 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------~~~rv~~~~~d~~~~---~p~--~D~v~~ 270 (369)
..+||++||| +|..+.-++...|...+..-|- ...+...+ ...++.++..+.... +.+ .|+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 3789999999 6667777777788888877775 33333222 225566666666542 222 299999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+..+.+ ++....+.+.+...|+|.|+-++..+-
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecCc
Confidence 999854 366778999999999999997776653
No 244
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.33 E-value=0.012 Score=58.70 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=44.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC--------CeEEEcch-hHHHHhCCC----CC--CceEEeCCCCCC-------C-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH--------IEGVNFDL-PHVIQNAPS----YR--GVKHIGGNMFER-------I- 262 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~----~~--rv~~~~~d~~~~-------~- 262 (369)
...+|||.|||+|.++..++++.+. ..++++|+ +..++.++. .. .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887652 46788888 666655432 12 345666665431 1
Q ss_pred CCCCEEEec
Q 017595 263 PKGDAILMK 271 (369)
Q Consensus 263 p~~D~v~~~ 271 (369)
+..|+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 123999876
No 245
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.29 E-value=0.0083 Score=55.69 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=65.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-------CCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCC-C-CC--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-------YPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFE-R-IP-- 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~-~p-- 263 (369)
.....+|+|-+||+|.++.++.+. .+..+++++|. +.....+.- .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455679999999999999998874 47788899998 665554321 1334688889876 3 22
Q ss_pred C-CCEEEeccccccC--Ch-----------------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 264 K-GDAILMKWILHNW--DD-----------------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 264 ~-~D~v~~~~vlh~~--~d-----------------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. .|+|++.--+-.. .+ ..-..++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 2 3988876332211 10 1112588999999999999877654
No 246
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.28 E-value=0.0041 Score=50.45 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=41.6
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
+++|||||.|.++..++..+|+.+++.+|. |...+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 7777655432 457777766554
No 247
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0047 Score=49.32 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC-C--CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK-G--DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~--D~v~~~~vl 274 (369)
+.+.++|+|||.|-+..+.. .+.+-.++|+|+ |..++.+... -++.+.+.|+.+..+. + |.++...-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 45899999999999984433 233446899999 9998887654 3568888888874433 2 776665544
No 248
>PHA00738 putative HTH transcription regulator
Probab=96.27 E-value=0.0061 Score=46.08 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=50.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.++.|++.|... ++.++.+|++.+++ .++.+++.|+.|..+|+|...... ...+|++++...
T Consensus 13 tRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~G---r~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEG---RTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEEC---CEEEEEECCCcc
Confidence 577889999874 37999999999999 999999999999999999875321 234677776555
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.25 E-value=0.013 Score=52.84 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=57.1
Q ss_pred CcceEEEEcCChh-HHHHHHHHh-CCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCC-C--CCCCCEEEec
Q 017595 206 QIKQLVDVGGGLG-VTLNIITSR-YPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFE-R--IPKGDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G-~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~--~p~~D~v~~~ 271 (369)
.+.+|+=||+|.= ..+..+++. .++..++++|. |...+.+++ ..++.|+.+|..+ + +...|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4579999999955 445555544 46788889998 777766543 2689999999876 2 3345998877
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
...- .+.++-.++|+++.+.|+||+++++.
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 23345679999999999999988876
No 250
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=0.025 Score=49.01 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=69.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhC-------CCCCCceEEeCCCCCCC----CC----C-CE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNA-------PSYRGVKHIGGNMFERI----PK----G-DA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~~~----p~----~-D~ 267 (369)
+++++||||.=+|.-+..++...|. -+++.+|. +...+.+ .-...|+++.++..+.+ +. . |+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5799999999999999998888875 57788887 5444433 22367999999887632 21 2 77
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
++.- +| .........++.+++|+||.|++-....+.
T Consensus 153 aFvD----ad-K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFVD----AD-KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEc----cc-hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 7643 23 344558999999999999977655544433
No 251
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.092 Score=47.57 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=103.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC--CCCeEEEcchhHHHHhCCC----C--------------------
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY--PHIEGVNFDLPHVIQNAPS----Y-------------------- 248 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----~-------------------- 248 (369)
..++.. .++..+|+.+|||.-.+...+...+ +.++++.+|.|++++.--. .
T Consensus 79 ~~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~ 155 (335)
T KOG2918|consen 79 RAFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGT 155 (335)
T ss_pred HHHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcc
Confidence 344443 4578999999999999999999988 8889999999877653210 0
Q ss_pred ----CCceEEeCCCCC--CCC----C----C---CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc
Q 017595 249 ----RGVKHIGGNMFE--RIP----K----G---DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE 311 (369)
Q Consensus 249 ----~rv~~~~~d~~~--~~p----~----~---D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 311 (369)
++..++..|+.+ .+. . . -+++.-=+|-+++++....+++-+..... .+.+++.|.+.+.++
T Consensus 156 ~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~- 233 (335)
T KOG2918|consen 156 DLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR- 233 (335)
T ss_pred eeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-
Confidence 345666666653 111 1 1 35566678888999999999999888776 567888999886653
Q ss_pred chHHHhhhhhhhHHHHHhhc-C-----C--ccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 312 ATAAAREASMTDIIMLMQFS-G-----G--RERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 312 ~~~~~~~~~~~d~~~~~~~~-~-----~--~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+... |...+. . | ...|.+..++.|.++||+-+.+..+
T Consensus 234 ------Fg~v----M~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 234 ------FGKV----MLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ------HHHH----HHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2222 222110 1 1 1248889999999999998877653
No 252
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.09 E-value=0.0041 Score=45.15 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCC-CCCcceecChhchhhh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAG-DNQRLYSLAPVAKYFV 122 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-~~~~~y~~t~~~~~~~ 122 (369)
++++|+..|... +..+..+|.+.+|+ +...+.+.|+.|...|+|+....-.+ .....|++|+.++...
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~ 69 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAF 69 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHH
Confidence 477888899875 48999999999999 99999999999999999987543211 1224699998887544
No 253
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.08 E-value=0.0051 Score=58.08 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=41.3
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
.++||++||+|.++..+++... +++++|. +.+++.+++. ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988874 7888888 7777766542 478899998865
No 254
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.05 E-value=0.0075 Score=42.05 Aligned_cols=63 Identities=14% Similarity=0.311 Sum_probs=42.3
Q ss_pred HhChhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 49 ELGVFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 49 ~lglfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
++-++..|. .. ++.+..+|++.+++ +...+.+.++.|...|+|++...+.......|++|+.+
T Consensus 5 q~~vL~~l~~~~---~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 5 QWQVLRALAHSD---GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHHHT--T---S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHHHccC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 344555565 32 59999999999999 99999999999999999976533211122468888753
No 255
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.03 E-value=0.022 Score=54.99 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=65.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeE---EEcchhHHHHhCCCCCCceEEeCCCCCCC---CCC-CEEEecccccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEG---VNFDLPHVIQNAPSYRGVKHIGGNMFERI---PKG-DAILMKWILHN 276 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~rv~~~~~d~~~~~---p~~-D~v~~~~vlh~ 276 (369)
.....+|+|..+|.|.|+.+|.+. | +=+ +-.+-+..+...-.+ ++.-+-+|..+++ |.. |++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 456789999999999999999754 2 222 211112222222211 2333344665544 554 99999999888
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDD-EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+.+ -+...+|-++-|.|+|||.++|.|.+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 743 33568999999999999999998753
No 256
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.03 E-value=0.0076 Score=53.91 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=49.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|...+ .+.++.|||+++|+ +..-+.|+|..|+..|++.++. +.++|++++..-.
T Consensus 7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~-----~~g~Y~Lg~~~~~ 66 (246)
T COG1414 7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP-----EDGRYRLGPRLLE 66 (246)
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCcEeehHHHHH
Confidence 46888888742 35679999999999 9999999999999999999862 3578999976543
No 257
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=96.01 E-value=0.02 Score=48.77 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=61.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC---------CCceEEeCCCCC-CC----C------CC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY---------RGVKHIGGNMFE-RI----P------KG 265 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~rv~~~~~d~~~-~~----p------~~ 265 (369)
+...|+.+|||--.....+....++++++.+|+|.+++.-++. .+++++..|+.+ .+ . ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4559999999999999999998889999999999887754331 236789999986 21 1 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNC 289 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~ 289 (369)
-++++-.++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 578888999999999999988876
No 258
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.05 Score=52.62 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=84.7
Q ss_pred ChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcC--CcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-h
Q 017595 167 GVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFE--QIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-P 239 (369)
Q Consensus 167 ~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 239 (369)
..|+.+++|+-.-..|++++ ...++++.+.-+ ....|+=+|+|.|-++.+.++. .-.++.+.++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 45777888886555665544 446666665322 2568889999999887776554 34567777776 7
Q ss_pred HHHHhCCCC------CCceEEeCCCCC-CCC--CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 240 HVIQNAPSY------RGVKHIGGNMFE-RIP--KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 240 ~~~~~a~~~------~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
..+-..+.. .+|+++..|+.+ .-| +.|+++.--.=.+-+.|-..+.|.-+-+.|||+|.-|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 665544432 689999999998 444 2488765433222233445578999999999998554
No 259
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.83 E-value=0.048 Score=56.38 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=72.0
Q ss_pred hHHHHHHhccCc-CCcceEEEEcCChhHHHHHHHHhC----C--------------------------------------
Q 017595 193 VMNRILDSYNGF-EQIKQLVDVGGGLGVTLNIITSRY----P-------------------------------------- 229 (369)
Q Consensus 193 ~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~----p-------------------------------------- 229 (369)
.+..++..-. | ++...++|-.||+|.++++.+... |
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3445555443 6 456899999999999998876531 1
Q ss_pred CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCC---C-CCEEEecccccc-CC-hhHHHHHHHHHHHhCC
Q 017595 230 HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIP---K-GDAILMKWILHN-WD-DEHCLTLLKNCYEAIP 294 (369)
Q Consensus 230 ~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p---~-~D~v~~~~vlh~-~~-d~~~~~~L~~~~~~L~ 294 (369)
..+++++|. +.+++.++.. +++.+..+|+.+ +.+ . .|+|+++--.-. +. +++...+.+.+.+.|+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 8887766542 568999999987 332 1 399988744321 22 2334455455555544
Q ss_pred ---CCCEEEEEec
Q 017595 295 ---ENGKIIIIDR 304 (369)
Q Consensus 295 ---pgG~lli~e~ 304 (369)
||+++.++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877654
No 260
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.79 E-value=0.01 Score=38.29 Aligned_cols=45 Identities=9% Similarity=0.299 Sum_probs=38.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
.+..|+..|.+. ++.|..+||+.+|+ ....+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 456788999886 37999999999999 9999999999999999974
No 261
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.79 E-value=0.0097 Score=42.83 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=43.6
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
|+..|.. ++.+..+|+...++ +...+.++|+.|...|++.. .++.|.+|+.+..++.
T Consensus 11 IL~~l~~----~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~-------~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK----GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKK-------KDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T----T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEE-------ETTEEEE-HHHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeC-------CCCEEEECccHHHHHH
Confidence 4455543 48999999999999 99999999999999999965 4689999999987764
No 262
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.77 E-value=0.011 Score=53.73 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=48.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+.|++.|.+.+ ++.|+.|||+.+|+ +..-+.|+|..|+..|++.++. +.++|++.+...
T Consensus 31 l~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~-----~~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG-----ELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCeEecCHHHH
Confidence 35677776642 48999999999999 9999999999999999998752 458899986644
No 263
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.76 E-value=0.015 Score=44.07 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=30.6
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL 238 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 238 (369)
.+.-|.+.+. ......++|||||+|.+..-|... +.++.++|.
T Consensus 46 Li~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 46 LIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 3444444443 345678999999999998888765 456788885
No 264
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.71 E-value=0.013 Score=53.32 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=48.5
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+.|++.|...+ .+.|+.|||+.+|+ +..-+.|+|..|+..|+|.++. ..+.|++.....
T Consensus 28 l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~-----~~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS-----QLGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCeEEecHHHH
Confidence 36777777643 47999999999999 9999999999999999998752 457899886543
No 265
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.69 E-value=0.0045 Score=51.27 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=41.1
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCC---CC--C-CCEEEecc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFER---IP--K-GDAILMKW 272 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p--~-~D~v~~~~ 272 (369)
..|+|+.||.|..+.++++.+.. ++.+|+ |..++.++. .++|+++.+|+++- +. . .|+|+++-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999999865 555555 544444432 26899999999872 22 2 38888664
No 266
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.62 E-value=0.0072 Score=51.42 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=62.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C---CCC-CEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I---PKG-DAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~---p~~-D~v~~ 270 (369)
...++||+=||+|.++.+.+.+.- .+++.+|. +..+...++. +++.++..|.+.. . ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 468999999999999999888863 36777777 6555544431 4688999997652 1 223 99998
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEHCLTLLKNCY--EAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~ 305 (369)
---.... ....++++.+. .+|+++|.++ +|..
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii-~E~~ 154 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLII-IEHS 154 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEE-EEEE
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEE-EEec
Confidence 8664432 11356777776 7889888555 5543
No 267
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.62 E-value=0.013 Score=52.58 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=48.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|...+ .+.|+.|||+.+|+ +..-+.|+|..|+..|++.++ .+.|++.+....
T Consensus 12 l~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~-------~~~Y~lG~~~~~ 69 (248)
T TIGR02431 12 LAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD-------GRLFWLTPRVLR 69 (248)
T ss_pred HHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-------CCEEEecHHHHH
Confidence 46788887643 48999999999999 999999999999999999863 478999876443
No 268
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.61 E-value=0.019 Score=42.00 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
++.|+++||+.+++ ++..++++|..|...|+++... | ..+.|.++...+.
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~---G-~~GGy~L~~~~~~ 73 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR---G-RGGGYRLARPPEE 73 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET---S-TTSEEEESS-CCG
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC---C-CCCceeecCCHHH
Confidence 46999999999999 9999999999999999998642 1 3477888765443
No 269
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.60 E-value=0.013 Score=52.76 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=48.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++. +.+.|++.+....
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~-----~~~~Y~lG~~~~~ 75 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG-----ESEKYSLTLKLFE 75 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCcEEecHHHHH
Confidence 3567777653 47999999999999 9999999999999999998752 3578999976543
No 270
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=95.59 E-value=0.0045 Score=43.35 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=41.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..++..|... |+.|+.+||+.+|+ +...+.+.|+-|...|++...
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999875
No 271
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.16 Score=47.09 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=69.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeC-CCCC-CCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGG-NMFE-RIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~-d~~~-~~p~~--D~v~~~~ 272 (369)
......|||==||||.++++..-. +++++|.|+ ..++.-++.. ....+... |+.. |++.. |.|.+-.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 446679999999999999997654 578888898 6677666542 33444454 8877 77763 7765432
Q ss_pred c------cccCC-hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 I------LHNWD-DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 v------lh~~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
- ..-.. ++--.++|+.+.+.|++||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11111 34567999999999999999987654
No 272
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.18 Score=44.96 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=72.5
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC----C---CCceEEeCCCCC-CC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS----Y---RGVKHIGGNMFE-RI 262 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~rv~~~~~d~~~-~~ 262 (369)
.+.-|+..++ .....+|++=|.|+|.++.++++. .|.-+..-+|. ....+.+.+ + +++++..-|+.. .+
T Consensus 93 Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 93 DIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred cHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 3556677776 778899999999999999999988 47777777777 443444332 2 789999999877 34
Q ss_pred CC----CCEEEeccccccCChhHHHHHHHHHHHhCCCCC-EEEEEeccC
Q 017595 263 PK----GDAILMKWILHNWDDEHCLTLLKNCYEAIPENG-KIIIIDRMP 306 (369)
Q Consensus 263 p~----~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG-~lli~e~~~ 306 (369)
+. +|.|++-. |.+. ..+--++++||-+| ++....++.
T Consensus 172 ~~ks~~aDaVFLDl-----PaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 172 LIKSLKADAVFLDL-----PAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccccccceEEEcC-----CChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 32 38887643 2221 33455566777654 777666654
No 273
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.34 E-value=0.093 Score=49.84 Aligned_cols=92 Identities=10% Similarity=0.128 Sum_probs=69.3
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC------CCceEEeCCCCCCC---CC-CCEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERI---PK-GDAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~---p~-~D~v~~~~vl 274 (369)
..+|||.-||+|..+..++.+.+++ +++..|. |..++.+++. .++++..+|+..-+ .. .|+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3689999999999999999986554 6888998 7777655432 45788888887622 22 49998765 2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.. ...++..+.+.+++||.|.|.-+
T Consensus 124 -Gs----~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 -GT----PAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred -CC----cHHHHHHHHHhcccCCEEEEEec
Confidence 22 23688999999999999999843
No 274
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.33 E-value=0.031 Score=43.81 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=54.0
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ +...+.+.++-|...|+|.....+.....-.+.+|+.+..+..
T Consensus 28 ~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 4456688888775 48999999999999 8999999999999999998753221111236889988887665
No 275
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.30 E-value=0.022 Score=51.55 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=50.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYF 121 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~ 121 (369)
-+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++. +.+.|++++....+
T Consensus 13 al~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~-----~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 13 GLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA-----SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec-----CCCcEEEcHHHHHH
Confidence 346778886643 36999999999999 9999999999999999998752 35789999765543
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.22 E-value=0.034 Score=49.96 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=71.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC----------CCceEEeCCCCC---CCCCC--C
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY----------RGVKHIGGNMFE---RIPKG--D 266 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~---~~p~~--D 266 (369)
..+++++|=||+|.|.+.+...++ +.+ .+..+|. ..+++..+++ ++|.+..||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999998877 655 4677777 6666655442 789999998765 34343 8
Q ss_pred EEEeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|+.-..=---|... -..+++.+.++|||||+++++..+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 887553211111111 2366777889999999999887543
No 277
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.16 E-value=0.038 Score=41.48 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+|++.+++ ++..+.+.|+-|+..|+|.......+.....|.+|+.+..+..
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 356678888765 37999999999999 8999999999999999998642111111235777777665553
No 278
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.13 E-value=0.021 Score=40.06 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=36.5
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|.+.|... +.+|..+||..+++ ++..++.+|..|+..|.|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 56778775 58999999999999 999999999999999999875
No 279
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=94.96 E-value=0.038 Score=43.36 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=41.3
Q ss_pred HHhChhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccccc
Q 017595 48 AELGVFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLS 103 (369)
Q Consensus 48 ~~lglfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 103 (369)
.+..+|-+|- .+ +|.|+++||+.++. +..-+.+-|+-|...|++.+...
T Consensus 28 ~Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 28 LDVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeeee
Confidence 3556676776 44 59999999999999 99999999999999999998643
No 280
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.80 E-value=0.28 Score=45.92 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=59.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh--------C--------CCCeEEEcchhH-----HHHh-------CCCCCC--ceE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR--------Y--------PHIEGVNFDLPH-----VIQN-------APSYRG--VKH 253 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~-------a~~~~r--v~~ 253 (369)
..+..+|+|+||.+|..+..+... + |.+.++.-|+|. +... .....+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999887654432 2 235667777651 1100 000123 466
Q ss_pred EeCCCCCC-CCCC--CEEEeccccccCCh-------------------------------------hHHHHHHHHHHHhC
Q 017595 254 IGGNMFER-IPKG--DAILMKWILHNWDD-------------------------------------EHCLTLLKNCYEAI 293 (369)
Q Consensus 254 ~~~d~~~~-~p~~--D~v~~~~vlh~~~d-------------------------------------~~~~~~L~~~~~~L 293 (369)
++|.|+.. +|.. |++++++.||.++. .+...+|+-=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 77999984 6776 99999999996641 11223344444568
Q ss_pred CCCCEEEEEeccCCC
Q 017595 294 PENGKIIIIDRMPMV 308 (369)
Q Consensus 294 ~pgG~lli~e~~~~~ 308 (369)
+|||++++.=...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999998776655
No 281
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=94.80 E-value=0.034 Score=35.54 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+.|..+||+.+++ ....+.+.|+.|...|++...
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 7899999999999 999999999999999999863
No 282
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.71 E-value=0.022 Score=50.24 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=64.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCCCCCC--CCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFERIPK--GDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~--~D~v~~~~vlh~ 276 (369)
+.+.+|+|||||.-=++.-.....|+.++++.|+ +..++.... ..+.++...|...+.|. .|+.++--++|-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3578999999999999888888889999999999 666665443 25678888899986554 399999999987
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+..+.. ..--++.+.++- -.++|.-+.
T Consensus 184 le~q~~-g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp HHHHST-THHHHHHHHSCE-SEEEEEEES
T ss_pred HHHHhc-chHHHHHHHhCC-CeEEEeccc
Confidence 743332 232334444442 356665554
No 283
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.69 E-value=0.046 Score=37.30 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=36.9
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|.+.|.... +|.+..|||+.+|+ ...-.+++|..|...|.+...
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 5677776621 59999999999999 999999999999999999864
No 284
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.66 E-value=0.24 Score=46.17 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=74.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC--C-CCCCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER--I-PKGDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~--~-p~~D~v~~~~vl 274 (369)
..-+|||.=+|.|.++..++....- +++.+|+ |..++..++. +++..+.||...- . +.+|-|++.+.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999999887543 3889998 8777655432 5589999999882 2 335999887753
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+.+++..+.+.+++||.+...+.+..+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 2346788888899999999998887654
No 285
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.64 E-value=0.051 Score=44.60 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=45.9
Q ss_pred hHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 53 FEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 53 fd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+-.|+..+.+++.|+++||+..++ ++..|.++|..|...|+|.... ...|.|+++.....
T Consensus 14 L~~LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r----G~~GGy~Lar~~~~ 73 (150)
T COG1959 14 LLYLALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR----GKGGGYRLARPPEE 73 (150)
T ss_pred HHHHHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec----CCCCCccCCCChHH
Confidence 334444332248999999999999 9999999999999999998752 13578888865543
No 286
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=94.60 E-value=0.048 Score=37.70 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=37.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
+++|..+||+.+|+ ....+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~------~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR------GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec------CCCeEEeCC
Confidence 48999999999999 999999999999999999974 236777653
No 287
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=94.58 E-value=0.055 Score=46.87 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=50.6
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC--CCCCcceecChhchhhhc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA--GDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~~~~~ 123 (369)
.|...|.+. +|+|+.|||+++|+ ++..+++.|..|++.|+++...... |+..-.|++|..+...+.
T Consensus 15 ~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~ 82 (218)
T COG2345 15 RILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFP 82 (218)
T ss_pred HHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcc
Confidence 456667765 59999999999999 9999999999999999997643221 223346999888775443
No 288
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.55 E-value=0.09 Score=48.24 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 260 (369)
.+++++.+. ......++|.=+|.|..+..+++..|+.+++++|. |.+++.+++. +|+.++.++|.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777665 55667999999999999999999988899999999 8888776542 478888888865
No 289
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.47 E-value=0.077 Score=50.47 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCCC----CC---CCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFERI----PK---GDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~----p~---~D~v~ 269 (369)
..++|||+=|=||.++.+.+...- .++|.+|. ...++-+++. +++.++.+|.|+-+ .. .|+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 378999999999999999876532 27889998 6666666542 56899999998732 22 39998
Q ss_pred ecccccc------CC-hhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 270 MKWILHN------WD-DEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 270 ~~~vlh~------~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+---=.- |+ ..+-..++..+.+.|+|||.+++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6421110 11 133458899999999999999887654
No 290
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=94.36 E-value=0.066 Score=47.61 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYF 121 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~ 121 (369)
.++....+.+|+=.|.+ ||+|.+||...++. .+..+..-|+-|...|++.+ +++.|++|..+..+
T Consensus 8 ~if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~-------~~~~Y~LS~~G~ii 72 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ-------EGDRYSLSSLGKII 72 (260)
T ss_pred HHHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe-------cCCEEEecchHHHH
Confidence 34555678899999998 59999999999999 99999999999999999997 47999999999987
Q ss_pred hc
Q 017595 122 VL 123 (369)
Q Consensus 122 ~~ 123 (369)
+.
T Consensus 73 v~ 74 (260)
T COG4742 73 VE 74 (260)
T ss_pred HH
Confidence 75
No 291
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.23 E-value=0.048 Score=35.95 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL 92 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L 92 (369)
.-.+|.+|.+.|-||. +. ..|.++||+.+|+ .+.-+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-PR-----~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-PR-----RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-CC-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 3468999999999998 44 5899999999999 888777777654
No 292
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.07 E-value=0.26 Score=43.77 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=62.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-----------C-CCceEEeCCCCCC------CCC-CC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-----------Y-RGVKHIGGNMFER------IPK-GD 266 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~-~rv~~~~~d~~~~------~p~-~D 266 (369)
...+||++|+|+|..++..+ ......++.-|.|.+...... . ..+.+...+...+ .|. .|
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 46789999999995554444 445677888887665543221 0 1444444444331 234 59
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+|+.+.++++- +....++..++..|..++.+++.-..
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEec
Confidence 99999999875 44557778888888888855554444
No 293
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.05 E-value=0.097 Score=45.28 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=68.7
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhC-C---C--C---eEEEcchhHHHHhCCCCCCceEEeCCCCCC------
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-P---H--I---EGVNFDLPHVIQNAPSYRGVKHIGGNMFER------ 261 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p---~--~---~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~------ 261 (369)
+-+.|..+.+..|++|+....|.++.-+.++. . . - .++.+|+..+.. .+.|.-+.+|+.++
T Consensus 32 ideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 32 IDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHH
Confidence 33444445677899999999999998888772 2 1 1 278888854432 36788888999762
Q ss_pred ---CCC--CCEEEecc-----ccccCCh----hHHHHHHHHHHHhCCCCCEEEE
Q 017595 262 ---IPK--GDAILMKW-----ILHNWDD----EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 262 ---~p~--~D~v~~~~-----vlh~~~d----~~~~~~L~~~~~~L~pgG~lli 301 (369)
+.+ +|+|++-. -+|.++. +-....|.-....|+|||.++-
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 122 39998864 3676632 2233556677789999998873
No 294
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.04 E-value=0.055 Score=40.20 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=47.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
|+..|.. |+....||.+.+ ++ .+..|.+-|+.|...|+|.+...+.....-.|++|+.+..+..
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 4555655 499999999999 89 9999999999999999998753221111236999999887764
No 295
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.99 E-value=0.1 Score=47.86 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=48.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 260 (369)
..++++.+. ......++|.=-|.|+.+.++++++|+.+++++|. |.+++.+++. +|+.++.++|.+
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456777776 66778999999999999999999999999999999 8888766542 688888888754
No 296
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=93.98 E-value=0.09 Score=42.69 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++.++.+||+.+++ .+..+.+.|+.|...|+|... ..+.|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~------~~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE------KYRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe------cCceEEECHHHHHHH
Confidence 58899999999999 999999999999999999853 346799999887544
No 297
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=93.94 E-value=0.089 Score=45.57 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=50.7
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccccc--CCCCCCcceecChhchhhhc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLS--SAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~--~~~~~~~~y~~t~~~~~~~~ 123 (369)
..|+..|... ++.|+.+||+.+++ ++..+.+.|+.|...|+|..... ..+.....|.+|+.+.....
T Consensus 4 ~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 4577777664 48999999999999 99999999999999999986421 11222235788888776553
No 298
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=93.82 E-value=0.089 Score=42.02 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=39.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|.++||+.+++ ++..+.++|+.|...|++.... ...+.|.++....
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~----g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR----GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc----CCCCCccCCCCHH
Confidence 48999999999999 9999999999999999997531 1235677765444
No 299
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=93.77 E-value=0.046 Score=37.22 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.++-.|...++ .+.|+.+||+.+++ ++..+.+.++.|...|+|...
T Consensus 6 ~q~~vL~~l~~~~~-~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 6 SQFRVLMALARHPG-EELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHHSTT-SGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 35567777777531 12899999999999 999999999999999999875
No 300
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.71 E-value=0.43 Score=39.20 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC
Q 017595 26 DTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA 105 (369)
Q Consensus 26 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 105 (369)
+.++.+...-.....-..+. -|+..+... ++.+..+||+.+++ ++..+.++|+.|...|+|...
T Consensus 21 ~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---- 84 (152)
T PRK11050 21 EGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---- 84 (152)
T ss_pred HHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----
Confidence 35555555444333333332 355566653 48999999999999 999999999999999999863
Q ss_pred CCCCcceecChhchhhh
Q 017595 106 GDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 106 ~~~~~~y~~t~~~~~~~ 122 (369)
....+.+|+.+..+.
T Consensus 85 --~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 85 --PYRGVFLTPEGEKLA 99 (152)
T ss_pred --cCCceEECchHHHHH
Confidence 234677777766554
No 301
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.71 E-value=0.11 Score=48.53 Aligned_cols=109 Identities=17% Similarity=0.304 Sum_probs=74.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch---h-HHHHhC------------CCCCCceEEeCCCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL---P-HVIQNA------------PSYRGVKHIGGNMF 259 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~-~~~~~a------------~~~~rv~~~~~d~~ 259 (369)
.+.+.+. ........|+|+|.|.....++.......-+|+.+ | +..... ++...++.+.++|.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4455555 66778999999999999988877654444444443 2 222211 11245899999998
Q ss_pred CC------CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 260 ER------IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 260 ~~------~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+ .+++++|+..++. ++++...+ ++++..-+++|.+++-.++..+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEecccccccc
Confidence 73 2446888888886 44455444 44888889999999999988764
No 302
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=93.68 E-value=0.096 Score=42.14 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|+++||+.+++ ++..++++|..|...|++.... | ..|.|.++....
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~---G-~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR---G-PGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe---C-CCCCEeccCCHH
Confidence 48999999999999 9999999999999999997531 1 345688775444
No 303
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=93.66 E-value=0.11 Score=42.37 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=50.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++-.|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.....+.....-...+|+.+..+..
T Consensus 41 ~q~~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 41 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 344567777654 48999999999999 9999999999999999998753221111234677777765543
No 304
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.24 Score=41.94 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=62.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCC---CC-C--CCEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFER---IP-K--GDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p-~--~D~v~~~ 271 (369)
...++||+=+|+|.++.+.+.++- .+++.+|. .......++ ..++.++..|...- .+ . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999998864 35666676 444443332 26788888888741 11 2 4999988
Q ss_pred ccccc-CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 272 WILHN-WDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 272 ~vlh~-~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
--.+. +-+....-++-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 77762 111111111212457799999666533
No 305
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.45 E-value=0.42 Score=46.16 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=72.1
Q ss_pred ceEEEEcCChhHHHHHHHHh-CCCCeEEEcchhHHHHh-----CCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCC
Q 017595 208 KQLVDVGGGLGVTLNIITSR-YPHIEGVNFDLPHVIQN-----APSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWD 278 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~-----a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 278 (369)
-+++-+|||+-.+...+-+. |+++.-+.++ +.+++. ++..+...+...|+.. .++.. |+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 39999999999888776655 4544444333 333332 2334678999999988 67653 9999999999863
Q ss_pred -hhH-------HHHHHHHHHHhCCCCCEEEEEecc--CCCCCc
Q 017595 279 -DEH-------CLTLLKNCYEAIPENGKIIIIDRM--PMVTPE 311 (369)
Q Consensus 279 -d~~-------~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~ 311 (369)
|+. ....+..+.++|+|||+.+.+... .+..+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~ 171 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRK 171 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCC
Confidence 332 235689999999999999888773 444433
No 306
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=93.39 E-value=0.13 Score=42.87 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|+++||+.+++ ++..+.++|..|...|+|.... | .+|.|.+.....
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r---G-~~GGy~Lar~p~ 72 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR---G-PGGGYLLGKDAS 72 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC---C-CCCCeeccCCHH
Confidence 48999999999999 9999999999999999998631 1 346788875543
No 307
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.30 E-value=0.64 Score=37.67 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=49.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+-++..|...+ ++.|..+||+.+++ ++..+.+.++-|+..|+|.....+.....-...+|+.+..+..
T Consensus 34 ~~vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 34 WVTLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 34566666532 26899999999999 9999999999999999998753221111235778877776654
No 308
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.27 Score=39.54 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~ 265 (369)
++++..++ .....+.+|+|.|.|....+.++.. -...+++++ |-....++- ..+.+|..-|+++ ++...
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 45566555 3455899999999999887766554 345677777 544443321 2678899999988 77655
Q ss_pred -CEEE-eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 266 -DAIL-MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 266 -D~v~-~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+++ ....+ + ..+-.+++.-|+.+.+++-.-+-+|.
T Consensus 140 ~~vviFgaes~--m-----~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESV--M-----PDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHH--H-----hhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 3333 22221 1 12345566678888888887776554
No 309
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=93.22 E-value=0.055 Score=36.45 Aligned_cols=47 Identities=11% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.++..|... ++.+..+||+.+++ ++..+.++++-|...|++...
T Consensus 4 ~q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 4 SQFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 345566677775 48999999999999 999999999999999999875
No 310
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.22 E-value=0.11 Score=41.46 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
++.|+.+||+.+++ ++..+.+.|+.|...|++.... + ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~---g-~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR---G-VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC---C-CCCChhhcC
Confidence 58999999999999 9999999999999999997531 0 234566644
No 311
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=93.15 E-value=0.14 Score=39.40 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHhChhHHHH--hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 47 AAELGVFEIIA--KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 47 a~~lglfd~L~--~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
..++.++..|. ... +++.|..+||..+++ ++..+.+.++.|+..|+|.+...+.....-.+.+|+.+...+
T Consensus 25 ~~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 25 LEELLILYYLGKLENN-EGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHHHhhhcc-CCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 34556666666 211 158999999999999 999999999999999999875322111112466777666554
No 312
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.09 E-value=0.15 Score=34.29 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=39.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|++.|... +..|+++||+.+++ .+.-++|=|..|...|++...
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 467788775 59999999999999 999999999999999999874
No 313
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.09 E-value=0.17 Score=43.72 Aligned_cols=55 Identities=9% Similarity=0.283 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.-++|...++..|++.|... +|+.+-|||+++|+ ++.-+..-+..|+..|+++..
T Consensus 16 v~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 45677788999999999986 59999999999999 899999999999999999863
No 314
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.78 E-value=0.12 Score=50.15 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=41.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
++....+||+-||||.++.++++... +++++.+ |+.++.|+.. .+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 66779999999999999999998865 4555555 6665555432 688999995544
No 315
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.61 E-value=0.047 Score=41.70 Aligned_cols=86 Identities=19% Similarity=0.341 Sum_probs=41.6
Q ss_pred CEEEeccccc----cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHH
Q 017595 266 DAILMKWILH----NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 266 D~v~~~~vlh----~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 341 (369)
|+|+|-.|.- ++.|+-...+++++++.|+|||.+++ |+-.- .. +........ .+...+ ..-...++++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w----~s-Y~~~~~~~~-~~~~n~-~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPW----KS-YKKAKRLSE-EIRENY-KSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---H----HH-HHTTTTS-H-HHHHHH-HH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCc----HH-HHHHhhhhH-HHHhHH-hceEEChHHH
Confidence 6776665532 35788899999999999999997764 54211 00 000000000 000011 1111235568
Q ss_pred HHHHHH--cCCcceeEEEec
Q 017595 342 MALANE--AGFNGVNYECFV 359 (369)
Q Consensus 342 ~~ll~~--aGf~~~~~~~~~ 359 (369)
...|.+ .||+.++.....
T Consensus 75 ~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHTSTTT---EEEEE---
T ss_pred HHHHHhcccceEEEEEcccC
Confidence 887776 699988765543
No 316
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=92.59 E-value=0.19 Score=32.61 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=37.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+++.|... ++.++.+|++.+++ .+.-+.+.|..|...|++...
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 56666654 47999999999999 999999999999999999864
No 317
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=92.52 E-value=0.21 Score=41.06 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=45.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++..+.+||+.++. .++-+..+++-|...|++++. ..+.+.+|+.+.....
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~------~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE------PYGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe------cCCCeEEChhhHHHHH
Confidence 68999999999999 999999999999999999985 4688999998886554
No 318
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=92.36 E-value=0.23 Score=33.51 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=35.9
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|+..|.. ++.|..+|++.+++ +..-+.+.|+.|...|++...
T Consensus 2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 4455553 48999999999999 889999999999999999864
No 319
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=92.31 E-value=0.21 Score=34.98 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=43.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
+..|+..+... +.+..+|++.+++ +..-+.+.|+.|.+.|++...... ....|..++
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 44566776663 5899999999999 899999999999999999864211 235666665
No 320
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=92.22 E-value=0.18 Score=35.19 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=38.2
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
++.++..|.+ ++.+..+||+.+|+ ....+.+.++.|.+.|+...
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~ 45 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVL 45 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 4567778876 48899999999999 99999999999999999654
No 321
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=92.13 E-value=0.22 Score=43.14 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=47.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
.++.++..|... ++.+..+||+.+++ ++.-+.+.|+.|...|++.+.. .....|.+|+.
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~----~r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG----RKGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc----CCccEEEeCCC
Confidence 355777888764 37899999999999 9999999999999999999752 12356777764
No 322
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.95 E-value=2.5 Score=35.29 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=75.5
Q ss_pred EEcCChhHHHHHHHHhCC---CCeEEEcch-hHHHHhCCC---------CCCceEEe-CCCCC--C-C--CC--CCEEEe
Q 017595 212 DVGGGLGVTLNIITSRYP---HIEGVNFDL-PHVIQNAPS---------YRGVKHIG-GNMFE--R-I--PK--GDAILM 270 (369)
Q Consensus 212 DvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~rv~~~~-~d~~~--~-~--p~--~D~v~~ 270 (369)
=||=|.=.++.+|++.+. ++.++.+|. ..+.+.... ..++.++. .|..+ . . .. .|.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788889999999977 455678887 444443331 13344333 35554 1 2 12 299988
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 271 KWILHNW-----------DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 271 ~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++----. ..+-...+++.+.+.|+++|.+.|.-...+. ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 7653320 0123457899999999999999986543221 1111
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.++.+++||..++..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 24577788999988887654
No 323
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=91.63 E-value=0.2 Score=34.65 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-|-|+.|||+.+|++ .+..+.+.|+.|...|++...
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 377999999999992 388999999999999999874
No 324
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=91.58 E-value=0.37 Score=40.67 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=39.8
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..|+++|... |++|.++||..+|+ ....++++|..|...|++..
T Consensus 25 ~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 25 FEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred hHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 4588888875 58999999999999 99999999999999999985
No 325
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=91.39 E-value=0.36 Score=35.63 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHH----------HHhcCccc-cccccCCCCCCcceec
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILR----------LLVTNRVL-RCSLSSAGDNQRLYSL 114 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~----------~L~~~g~l-~~~~~~~~~~~~~y~~ 114 (369)
.-++..||..|....| .+.++.|||..++. ++..+..-|+ .|+.+|++ .+...+ ....|++
T Consensus 8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~---g~k~Y~l 79 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKG---GFKYYRL 79 (90)
T ss_pred HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecC---CeeEEEe
Confidence 4578889999988744 58999999999999 8887777775 58999999 332111 2358999
Q ss_pred Chhchhhh
Q 017595 115 APVAKYFV 122 (369)
Q Consensus 115 t~~~~~~~ 122 (369)
|+.+..++
T Consensus 80 T~~G~~~~ 87 (90)
T PF07381_consen 80 TEKGKRIA 87 (90)
T ss_pred ChhhhhHH
Confidence 99887654
No 326
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.30 E-value=4.6 Score=35.67 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=53.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC---C--CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK---G--DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~---~--D~v~~~~vl 274 (369)
..++||=||=. -..+.+++..++..+++++|+ ..+++...+. -.|+.+..|+..++|. + |+++.--.
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 35899999944 344555555566678999998 6665543321 2499999999998875 2 99987765
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
++.+-..-++.+...+||.-|.....-.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4557788999999999997664444433
No 327
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=91.23 E-value=0.25 Score=40.68 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.++.+||+..++ ++..|+++|..|...|+|.... | ..|.|+++....
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r---G-~~GGy~La~~p~ 71 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR---G-RNGGVRLGRPAA 71 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec---C-CCCCeeecCCHH
Confidence 47899999999999 9999999999999999998752 1 347788875544
No 328
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=91.19 E-value=0.26 Score=37.74 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 467788899885 48999999999999 99999999999999999984
No 329
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=91.09 E-value=0.36 Score=33.45 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.6
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCC--cccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNT--GVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~--~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
|++.|.+.+ +|++..+|++.+..+ ..+ +..++|.|++|...|++... ..+.+.+|+.+.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~~------g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRKV------GRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCcccc------CCcccccCHHHH
Confidence 567777753 699999999998652 113 47899999999999987753 233456766544
No 330
>PRK06474 hypothetical protein; Provisional
Probab=91.06 E-value=0.35 Score=40.88 Aligned_cols=74 Identities=9% Similarity=0.207 Sum_probs=54.4
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCC--CCCCcceecChh
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSA--GDNQRLYSLAPV 117 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~y~~t~~ 117 (369)
..+|.--.++.|++.|...+ ++.|+.+|++.+ ++ ...-+.|.|+.|+..|+|....... +.....|+++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 34566677889999998753 259999999998 57 7788999999999999999753210 111246888876
Q ss_pred chh
Q 017595 118 AKY 120 (369)
Q Consensus 118 ~~~ 120 (369)
+-.
T Consensus 79 ~~~ 81 (178)
T PRK06474 79 DAK 81 (178)
T ss_pred eee
Confidence 544
No 331
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=91.03 E-value=0.23 Score=45.21 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCC------CCCCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERI------PKGDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p~~D~v~~ 270 (369)
..++|||+=|=||.++...+.. .-.+++.+|. ...++.+++ .++++++..|+++.+ ...|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999986653 3457899998 666665543 258999999998732 12399975
Q ss_pred cccc---ccCC-hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 271 KWIL---HNWD-DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 271 ~~vl---h~~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
---- ..+. ..+-.++++++.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3110 0111 13456899999999999999876554
No 332
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.00 E-value=2.2 Score=40.30 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=67.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCC---CCEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPK---GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~---~D~v 268 (369)
.....+|||..++.|.=+.++++..++ ..++.+|. +.-++.... ..++.++..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456699999999999999999999876 45578887 544443322 1456677777543 1221 3665
Q ss_pred Ee------cccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LM------KWIL-------HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~------~~vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++ ..++ ..++.++ -.++|+.+.+.|||||+|+-..-..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 42 2333 3333332 3478999999999999888665544
No 333
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.68 E-value=0.36 Score=46.78 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC--C-CC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE--R-IP- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p- 263 (369)
...++.+. ..+..+++|+=||.|.++..++++.. ++++++. +..++.|+. .++++|+.++.++ + +.
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444443 45668999999999999999996654 5666666 666665543 2679999999887 2 21
Q ss_pred --CCCEEEeccccccCChhHHH-HHHHHHHHhCCCCCEEEEE
Q 017595 264 --KGDAILMKWILHNWDDEHCL-TLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 --~~D~v~~~~vlh~~~d~~~~-~~L~~~~~~L~pgG~lli~ 302 (369)
..|+|+.---=-- +. .+++.+.+ ++|-..++|.
T Consensus 360 ~~~~d~VvvDPPR~G-----~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 360 GYKPDVVVVDPPRAG-----ADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred cCCCCEEEECCCCCC-----CCHHHHHHHHh-cCCCcEEEEe
Confidence 1288875433222 22 44555444 5666666664
No 334
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.68 E-value=0.48 Score=45.09 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=52.4
Q ss_pred CCceEEeCCCCC---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 249 RGVKHIGGNMFE---RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 249 ~rv~~~~~d~~~---~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
++|+++.+++.+ ..|.+ |.+++..++..+++++..+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 899999999877 34443 9999999999999999999999999999999999998876543
No 335
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=90.55 E-value=0.43 Score=35.41 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.|+.+|...| |=.+.-+|..+++ +...+.+.|+-|..+|++++.
T Consensus 8 l~~~IL~hl~~~~---~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAG---PDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4567888998864 6688899999999 999999999999999999986
No 336
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.45 E-value=2.1 Score=40.41 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=67.3
Q ss_pred CcCCcceEEEEcCChhHHHHHHHHhCCCC---------------------------------------eEEEcch-hHHH
Q 017595 203 GFEQIKQLVDVGGGLGVTLNIITSRYPHI---------------------------------------EGVNFDL-PHVI 242 (369)
Q Consensus 203 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~ 242 (369)
+|.....++|-=||+|+++++.+...+++ .++++|+ +.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 47766899999999999999988887642 2669998 8888
Q ss_pred HhCCCC-------CCceEEeCCCCC-CCC--CCCEEEecccccc-CChhH-HH----HHHHHHHHhCCCCCEEEEEe
Q 017595 243 QNAPSY-------RGVKHIGGNMFE-RIP--KGDAILMKWILHN-WDDEH-CL----TLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 243 ~~a~~~-------~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~-~~d~~-~~----~~L~~~~~~L~pgG~lli~e 303 (369)
+.|+.. +.|+|..+|+.. .-+ ..|+||++----. +.++. .. .+.+.+.+.++--++.+++.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 876642 679999999976 333 3489888743111 22222 22 34444445555556666554
No 337
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.30 E-value=1.1 Score=41.68 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=65.1
Q ss_pred cCCcceEEEEcC-ChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCC---CCCCCCC-CCEEEeccccccC
Q 017595 204 FEQIKQLVDVGG-GLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGN---MFERIPK-GDAILMKWILHNW 277 (369)
Q Consensus 204 ~~~~~~vLDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~v~~~~vlh~~ 277 (369)
.....+|+=+|. |.|.++.++++..- .+++.+|. ++-.+.+++...-.++... ..+.... .|+++-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 345677877775 57789999999876 99999999 7767777766555555543 2222222 377765443 2
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..+....++|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 34677888999999999988764
No 338
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=90.06 E-value=0.48 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred CC-CHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KL-SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~-t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+ |..+||+.+++ ....+.+.|+.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 55 89999999999 999999999999999999764
No 339
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=90.06 E-value=0.45 Score=33.92 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=38.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|=|+|... |..+..+||..++. +++.++.+|..|+..|-+++.
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 44677776 58999999999999 999999999999999999875
No 340
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=89.98 E-value=0.38 Score=38.99 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=38.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
.+.+..+||+.+|+ ++..+++.|..|...|++.... | .++.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~---G-~~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR---G-KNGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec---C-CCCCeeecC
Confidence 47899999999999 9999999999999999998752 1 245677764
No 341
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.95 E-value=0.73 Score=41.86 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=54.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCe-EEEcch-hHHHHhCCCC-----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIE-GVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 260 (369)
..++++.+. .......+|.-=|.|+.+..+++++|... .+++|. |.+++.+++. +|+.++.++|.+
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 456677676 56669999999999999999999998765 999999 8888887752 588888887754
No 342
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.68 E-value=3.8 Score=34.79 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=73.1
Q ss_pred CcceEEEEcCChhHHHHHHHH----hCCCCeEEEcch--hHHHHhCCCCCCceEEeCCCCCC-CC-------C-C-CEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITS----RYPHIEGVNFDL--PHVIQNAPSYRGVKHIGGNMFER-IP-------K-G-DAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~----~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~~-~p-------~-~-D~v~ 269 (369)
++..|+++|.-.|..+..++. .....+++++|+ ...-..+.+.++|.|+.++-.++ +. . . -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999776665544433 233456766665 33334455578999999988773 21 1 1 5666
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE 311 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 311 (369)
+-..-|++ +.....|+-..++|.-|.++++-|...++-+.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 66777777 77778888889999999999999998876553
No 343
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=89.56 E-value=0.38 Score=32.65 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++++..+||+.++. .+.-+...++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 59999999999999 999999999999999999874
No 344
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=89.37 E-value=3.7 Score=39.15 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=61.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhH----HHHHHHHh---CCCCeEEEcchhH-----HHHhCCCC-------CC--ceE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGV----TLNIITSR---YPHIEGVNFDLPH-----VIQNAPSY-------RG--VKH 253 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~---~p~~~~~~~D~~~-----~~~~a~~~-------~r--v~~ 253 (369)
..|++.+. -....+|+|+|.|.|. +...|+.+ -|.+++|+++.|. .++.+.+. -+ .+|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 46677776 4466899999999995 34445554 3778999999832 22222111 12 344
Q ss_pred EeC--CCCCCC-------CCCC--EEEeccccccCChhH------HHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 254 IGG--NMFERI-------PKGD--AILMKWILHNWDDEH------CLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 254 ~~~--d~~~~~-------p~~D--~v~~~~vlh~~~d~~------~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
... +-.+++ ..++ +|-+...||++.++. ...+|+. .+.|+|. .++++|.-.+.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPK-VVVLVEQEADH 248 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCC-EEEEEeecCCC
Confidence 332 211111 1133 334667789886332 3346655 4578997 56666665433
No 345
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=89.35 E-value=0.23 Score=46.87 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=40.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNM 258 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~ 258 (369)
++.+++.++ ..+. ++||+=||.|.++..++..+. ++++++. +.+++.|+. .++++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 445555555 3333 799999999999999998875 5666676 666665543 26889988764
No 346
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=89.25 E-value=0.47 Score=35.40 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 67 AAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 67 ~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+.+||+.+++ ++..+.+.|+.|...|+|... ....|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~------~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE------PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc------CCCceEechhHHHHH
Confidence 5689999999 999999999999999999974 235788888777654
No 347
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=89.24 E-value=0.49 Score=37.09 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-.+.|+..|... +|.|+.|+|+..|- +...+.|-|+.|+..|++...
T Consensus 65 ~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 65 RNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred hHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 456788888886 59999999999999 999999999999999999864
No 348
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=89.15 E-value=0.27 Score=36.57 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=47.2
Q ss_pred hhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+||.|. .. +++..+.-|.-..++ +......+++.|+..|++.... +.....|.+|+.+..|+.
T Consensus 20 i~dIL~~~~--~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~---~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 20 IFDILKAIS--EGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQD---NGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHhc--CCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEecc---CCccceEEEChhHHHHHH
Confidence 355555 22 158889999999999 9999999999999999665431 112247999999998765
No 349
>PHA02943 hypothetical protein; Provisional
Probab=89.11 E-value=0.57 Score=37.78 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=37.7
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|++.|.. |..|..+||+++|+ .....+-.|..|...|.+.+.
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 46677733 58999999999999 899999999999999999876
No 350
>PRK10870 transcriptional repressor MprA; Provisional
Probab=88.88 E-value=0.56 Score=39.59 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=50.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|...+ +++.|..+||+.+++ +..-+.++++-|+..|+|.+...+.....-...+|+.+..++.
T Consensus 57 q~~iL~~L~~~~-~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQE-NHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 445666665421 247899999999999 9999999999999999999753321111235778888776664
No 351
>KOG2730 consensus Methylase [General function prediction only]
Probab=88.87 E-value=0.24 Score=42.68 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=40.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC----C---CCceEEeCCCCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS----Y---RGVKHIGGNMFE 260 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~---~rv~~~~~d~~~ 260 (369)
....|+|.-||.|+.+..++.++|.+-.+..|. .-+.-|+. + +||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP-ikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP-VKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccH-HHHHHHhccceeecCCceeEEEechHHH
Confidence 457899999999999999999998655555553 33333332 1 799999999987
No 352
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=88.83 E-value=0.31 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVL 98 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l 98 (369)
|+|-.|||+.+|+ ...-+.|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 999999999999999875
No 353
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.81 E-value=0.78 Score=35.81 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=44.1
Q ss_pred HHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 45 QAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 45 ~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..+...|.+.+.+. |.+|+.+++..+|+ +-.-+.++|+.|++.|-|...
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 445677888999887 59999999999999 999999999999999988753
No 354
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=88.79 E-value=0.78 Score=36.00 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCCcccHHHHHHHHhcCccccccccCCC
Q 017595 28 YSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP-SRNPNTGVMLDRILRLLVTNRVLRCSLSSAG 106 (369)
Q Consensus 28 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 106 (369)
.+...+.+.+-|..-+|+... . |+....+|.+.++ + .+..|.+-|+.|+..|++.+..-+..
T Consensus 13 ~~~~l~~ig~kW~~lIl~~L~---------~----g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 13 VEEALEVIGGKWTLLILRDLF---------D----GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred HHHHHHHHcCccHHHHHHHHh---------c----CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 556677777777777665443 2 3889999999988 8 99999999999999999987422211
Q ss_pred CCCcceecChhchhhhc
Q 017595 107 DNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 107 ~~~~~y~~t~~~~~~~~ 123 (369)
...-.|++|+.+..+..
T Consensus 76 PprveY~LT~~G~~L~~ 92 (120)
T COG1733 76 PPRVEYRLTEKGRDLLP 92 (120)
T ss_pred CceeEEEEhhhHHHHHH
Confidence 12346888888876553
No 355
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=88.40 E-value=0.79 Score=35.52 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=44.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSR-NPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+.-|++.|...+ ++.|+++|.+.+.-. ++.+..-+.|.|+.|+..|++.+...++ ...+|..+
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~--~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGD--GKARYELN 66 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCC--CceEEEeC
Confidence 455788887642 589999999997321 1127788999999999999998753221 22567654
No 356
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.22 E-value=3.3 Score=39.55 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=62.0
Q ss_pred cCCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCC----CCC---CC-CC-C-CEEEec
Q 017595 204 FEQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGN----MFE---RI-PK-G-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d----~~~---~~-p~-~-D~v~~~ 271 (369)
.....+||.+|||. |..+..+++...-.+++.++. +...+.+++...+.++... +.+ .+ +. + |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 44567899999987 889999999886445777776 6666655544223333211 111 11 11 3 776543
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 272 W---------------ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 272 ~---------------vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
- +|+..++ ....++.+.+.|+|+|++++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETD--RPDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccC--chHHHHHHHHHhccCCEEEEEcCC
Confidence 1 2222222 245788899999999999988643
No 357
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=88.20 E-value=0.9 Score=30.87 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 65 LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 65 ~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|..+||+.+++ +...+.+.|..|...|++...
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~ 58 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVERR 58 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 459999999999 999999999999999999753
No 358
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=87.97 E-value=0.62 Score=38.55 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=39.1
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..|+++|... +.+|-++||..+|+ +..-++++|..|...|++..
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~ 60 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADY 60 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence 4578888754 58999999999999 99999999999999999964
No 359
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.85 E-value=0.4 Score=42.69 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=53.4
Q ss_pred CcceEEEEcCChhHHHH---HHHHhC--CCCeEEEcch-h---HHHH---------------------------hCCCC-
Q 017595 206 QIKQLVDVGGGLGVTLN---IITSRY--PHIEGVNFDL-P---HVIQ---------------------------NAPSY- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~---~l~~~~--p~~~~~~~D~-~---~~~~---------------------------~a~~~- 248 (369)
-++-|+|+||=.|..+. .+++.+ ++-++.++|. . ..-. ...++
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34799999998886554 344443 4456777773 2 1111 11111
Q ss_pred ---CCceEEeCCCCCCCCCC---CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 249 ---RGVKHIGGNMFERIPKG---DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 249 ---~rv~~~~~d~~~~~p~~---D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+++.++.|.|.+.+|.. .+.++.-=.--+ +-....|+.++..|.|||.+++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 47999999997655532 222222111112 44678999999999999988876643
No 360
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=87.54 E-value=0.87 Score=35.28 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcC
Q 017595 45 QAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLN 124 (369)
Q Consensus 45 ~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~ 124 (369)
.+-.++.++..|...+ +.+..+||+.+++ ++..+.++++-|...|+|.....+.....-.+.+|+.+..+...
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 3456677777887753 3444999999999 99999999999999999987533211112357888887766543
No 361
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=87.51 E-value=0.73 Score=40.17 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..+|..+||+.+++ ++..+.+.|+.|...|++.+...+ ....+.+|+.+..++.
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~---r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVP---RGQLITITEKGLDVLY 73 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcC---CceEEEECHHHHHHHH
Confidence 36899999999999 999999999999999999875211 3456888887776553
No 362
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=87.48 E-value=1 Score=38.27 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=50.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|... ++.|..+||+.+++ +..-+.++++-|...|+|.....+.....-...+|+.+..+..
T Consensus 47 q~~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 47 EHHILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 34667777665 48999999999999 8889999999999999998753221111235677877776654
No 363
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=86.75 E-value=0.97 Score=29.75 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=33.2
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNR 96 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g 96 (369)
.|+..|.... +++|.++||+.+++ ..+-+.+.+..|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4666774432 47999999999999 9999999999999999
No 364
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.31 E-value=5.7 Score=37.47 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=65.0
Q ss_pred ceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCC-C------CC--CCC-CEEEeccccc
Q 017595 208 KQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMF-E------RI--PKG-DAILMKWILH 275 (369)
Q Consensus 208 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~-~------~~--p~~-D~v~~~~vlh 275 (369)
.+++=+||| .|.++..+++.+.-.++++.|. +.-++.|++......+.-.-. . .. +.+ |+++=+.-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 399999999 6778888888888889999999 888888876322222221111 0 11 223 88765544
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
....+..+.++++|||+++++-.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124788899999999999998887554
No 365
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=85.29 E-value=0.81 Score=45.32 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=54.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCC
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~ 125 (369)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|.+.|+|.... .....|.+|+.++.++...
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~----~~~~~i~LTeeG~~~~~~g 73 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE----RVEEVYVLTEEGKKYAEEG 73 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe----eeEEEEEECHHHHHHHHhc
Confidence 456677788764 48999999999999 9999999999999999998741 1236799999998776643
No 366
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.25 E-value=4.7 Score=36.73 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=57.2
Q ss_pred ceEEEEcCC--hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCC-CCCCCCCCEEEeccccccCChhHHH
Q 017595 208 KQLVDVGGG--LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNM-FERIPKGDAILMKWILHNWDDEHCL 283 (369)
Q Consensus 208 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~-~~~~p~~D~v~~~~vlh~~~d~~~~ 283 (369)
.+|+=+|.| .|.++..+.++.+...+++.|. ....+.+....-+.-...+. ......+|+|+++=-+ ....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-----EATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-----HHHH
Confidence 467778877 5667777888888888999998 55555555332222122222 2234445998876543 5567
Q ss_pred HHHHHHHHhCCCCCEE
Q 017595 284 TLLKNCYEAIPENGKI 299 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~l 299 (369)
.+++++...|+||..+
T Consensus 79 ~~l~~l~~~l~~g~iv 94 (279)
T COG0287 79 EVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHhcccCCCCCEE
Confidence 8999999999998643
No 367
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=85.19 E-value=1.1 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=42.7
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..+..|++.|..+ +..|..+||+++|+ .+.-+.+=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 4678899999886 58999999999999 99999999999999999974
No 368
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=85.10 E-value=1.2 Score=40.12 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCE
Q 017595 220 TLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGK 298 (369)
Q Consensus 220 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 298 (369)
++.+|.++.++.++++.|. +..++.+.+..-+.-...+ .+.+...|+|+++-- ......+|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP-----~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVP-----VSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCC-----HHHHHHHHHHhhhhcCCCcE
Confidence 4678888999999999998 7777777555444333332 223344599887653 35677888888888888865
Q ss_pred EEE
Q 017595 299 III 301 (369)
Q Consensus 299 lli 301 (369)
+.=
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 369
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=84.75 E-value=1.1 Score=31.97 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=42.8
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..+..+++.|...+. .+.+..+|+..++. +++.+...++.|...|++.+.
T Consensus 2 ~~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 2 DIQYCLLERIARSRY-NGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred chHHHHHHHHHhcCC-CCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 356678888887543 47899999999999 999999999999999999863
No 370
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=84.64 E-value=0.84 Score=36.76 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred eEEEcch-hHHHHhCCCC-------CCceEEeCCCCC---CCCC-C-CEEEeccccccCC---------hhHHHHHHHHH
Q 017595 232 EGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE---RIPK-G-DAILMKWILHNWD---------DEHCLTLLKNC 289 (369)
Q Consensus 232 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~-~-D~v~~~~vlh~~~---------d~~~~~~L~~~ 289 (369)
++.+||+ ++.++.+++. +||+++..+=.. -++. . |+++++.- ++| .+.....|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 4678898 7777766542 578888875543 3455 3 77776532 233 23466889999
Q ss_pred HHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 290 YEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 290 ~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.|+|||.+.|+--.-.+.. .... ....+|.+-|....|.+.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG----~eE~-----------------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGG----KEES-----------------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHH----HHHH-----------------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCC----HHHH-----------------HHHHHHHHhCCcceEEEEEEEccC
Confidence 999999999988765432211 0000 013345555566678888777765
No 371
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=84.45 E-value=1 Score=37.54 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=43.3
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
-.++..|+..|.++ +..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 13 D~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34788999999885 59999999999999 99999999999999999974
No 372
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=84.15 E-value=0.95 Score=34.32 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHhChhHHHHh-cCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 47 AAELGVFEIIAK-AGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 47 a~~lglfd~L~~-~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+.-.||+.|.. ...+.++++++|++++++ +..-++..|+.|...|++-.
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 345566777766 212348999999999999 99999999999999998853
No 373
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.70 E-value=2.7 Score=40.54 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=60.4
Q ss_pred CcceEEEEcCChh--HHHHHHHHhCCCCeEEEcch-hHHHHhCCC------C-CCceEEeCCCCC---CCC--C-CCEEE
Q 017595 206 QIKQLVDVGGGLG--VTLNIITSRYPHIEGVNFDL-PHVIQNAPS------Y-RGVKHIGGNMFE---RIP--K-GDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~---~~p--~-~D~v~ 269 (369)
.+..+.|+|.|.| ..+..++-+...-.++.+|. ..+...... + .++.+....++. +.+ . .|+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3467788887644 55555555544445788887 444443322 1 222222213333 332 2 39999
Q ss_pred eccccccCChhH-HHHHHHH-HHHhCCCCCEEEEEeccCC
Q 017595 270 MKWILHNWDDEH-CLTLLKN-CYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 270 ~~~vlh~~~d~~-~~~~L~~-~~~~L~pgG~lli~e~~~~ 307 (369)
++++||+++... ...+.++ .++..++|+.++|+|....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999986544 2334443 4566789999999998543
No 374
>PRK05638 threonine synthase; Validated
Probab=83.24 E-value=1.6 Score=42.62 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=47.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCC--CCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMP--SRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+.|+..|.. ++.++-||++.++ + .+..+.+.|+.|...|+|+...+. + ....|++|+.+..++
T Consensus 374 ~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~-g-~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 374 LEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRK-G-RRVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecC-C-CcEEEEECcHHHHHH
Confidence 335666665 4899999999998 7 888999999999999999753111 1 234699998877554
No 375
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=83.11 E-value=8.3 Score=35.40 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=38.4
Q ss_pred CcceEEEEcCChhH-HHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeC----CCCCCCC---CC-CE
Q 017595 206 QIKQLVDVGGGLGV-TLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGG----NMFERIP---KG-DA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~----d~~~~~p---~~-D~ 267 (369)
...++||||+|... +..--++.+ ++++++-|+ +..++.|++ .++|+++.. +++..+- +. |+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 35799999999764 333334444 899999998 777776653 257877754 4555321 22 89
Q ss_pred EEeccccccCC
Q 017595 268 ILMKWILHNWD 278 (369)
Q Consensus 268 v~~~~vlh~~~ 278 (369)
.+|.--+|.=.
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99999888643
No 376
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=82.87 E-value=1.5 Score=35.76 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=43.0
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..+..|++.|... ++.+..+||+++|+ .+..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 4577889999985 58999999999999 999999999999999999854
No 377
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=82.80 E-value=3.1 Score=42.94 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=54.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhC-------C-----CCeEEEcch-h---HHHHhCC----------------------C
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRY-------P-----HIEGVNFDL-P---HVIQNAP----------------------S 247 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 247 (369)
..-+|+|+|=|+|......++.. | .++++.++. | ..+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999998666655433 4 467777774 3 1111110 0
Q ss_pred C-------C--CceEEeCCCCCC---CCC-CCEEEeccc-cccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 248 Y-------R--GVKHIGGNMFER---IPK-GDAILMKWI-LHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 248 ~-------~--rv~~~~~d~~~~---~p~-~D~v~~~~v-lh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
. . ++++.-||+.+- +.. .|++++-.. -..-|+=-...+|+.+++.++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0 1 234556776552 222 377765421 11111111347888888888988887743
No 378
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.78 E-value=5.3 Score=35.20 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=65.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-----hHHHHhCCCCCCceEEeCCCCCCCCC----C--CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-----PHVIQNAPSYRGVKHIGGNMFERIPK----G--DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p~----~--D~v~~~ 271 (369)
++...+||-+|.++|....++... .|+--+..++. -..+..|+++++|.-+.-|...|..= + |+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 456789999999999999998877 34433333333 24566777788888888888775421 2 65543
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.+- .+++++-+.-++.--||+||.++|.
T Consensus 233 Dva---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 DVA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred cCC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 332 2244556666788899999988875
No 379
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.37 E-value=3.5 Score=36.75 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=68.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCC--CC-CEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP--KG-DAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p--~~-D~v~~~~vlh~~~d~~ 281 (369)
.....-+|+|.-.|.++..|.++ ++.++.+|...+.+.....++|+....|-|+-.| .. |-.+|-.| ++
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------Ek 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------EK 281 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------cC
Confidence 36789999999999999999987 5889999998888777778899999999988444 33 77777766 55
Q ss_pred HHHHHHHHHHhCCCC
Q 017595 282 CLTLLKNCYEAIPEN 296 (369)
Q Consensus 282 ~~~~L~~~~~~L~pg 296 (369)
..++-+.+..+|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 667777778888766
No 380
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=82.10 E-value=3 Score=29.81 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=42.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.|+...+||+.++. ++.-++--+..|.++|+|+... ...+.|..|..+..++.
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p----~~s~GriPT~~aYr~~~ 74 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP----HPSGGRIPTDKAYRALN 74 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC----CCCCCCCcCHHHHHHHc
Confidence 59999999999999 9999999999999999998421 12467777777665543
No 381
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=81.83 E-value=1.3 Score=38.10 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=36.2
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|.+.|.. ++.+.|.+|+|+++|+ ..--.+|+|.+|++.|++...
T Consensus 163 i~~~~~~--~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKE--PDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhC--cCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 3344542 2359999999999999 899999999999999999853
No 382
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=81.66 E-value=2 Score=34.49 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
|++|.+|||-++|. ..+.+...|.++++-|-+.+..
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEec
Confidence 69999999999999 9999999999999999998763
No 383
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=81.58 E-value=1.3 Score=43.23 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=56.7
Q ss_pred HHHhChhHHHHhcCCCCC-CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCC
Q 017595 47 AAELGVFEIIAKAGPGAK-LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~-~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~ 125 (369)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++.... ....|.+|..+..++...
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~----~~~~~~LT~eG~~~l~~G 71 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI----KRETWVLTEEGKKYAAEG 71 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE----EEEEEEECHHHHHHHHcC
Confidence 5677888888874 34 799999999999 99999999999999999976521 357899999999777654
Q ss_pred C
Q 017595 126 D 126 (369)
Q Consensus 126 ~ 126 (369)
.
T Consensus 72 ~ 72 (492)
T PLN02853 72 S 72 (492)
T ss_pred C
Confidence 3
No 384
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=81.28 E-value=1.2 Score=33.88 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=33.5
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-|++.|... |.++-++||..+++ ++.-++++|..|...|++...
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 467888754 48999999999999 999999999999999999753
No 385
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=81.19 E-value=2.1 Score=32.05 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
.++|-.|||+.+|+ +..-+.|.|+.|...|+|.... ..+.+..|
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~-----~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG-----MMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec-----CCceeecC
Confidence 38999999999999 9999999999999999998641 23566655
No 386
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.13 E-value=4 Score=36.74 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-----CCCeEEEcchh
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-----PHIEGVNFDLP 239 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 239 (369)
+.+...++|+|||.|.++..+.... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 5677899999999999999999998 56788999983
No 387
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.10 E-value=9 Score=38.06 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=60.5
Q ss_pred CcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC--------------C--------
Q 017595 206 QIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE--------------R-------- 261 (369)
Q Consensus 206 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~--------------~-------- 261 (369)
...+|+=+|+|. |..+...++... .+++++|. +...+.+++. ..+++..|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 468999999994 566667776664 58999998 8888877664 22322211110 1
Q ss_pred ----CCCCCEEEeccccccCChhHHHHH-HHHHHHhCCCCCEEEEEec
Q 017595 262 ----IPKGDAILMKWILHNWDDEHCLTL-LKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 262 ----~p~~D~v~~~~vlh~~~d~~~~~~-L~~~~~~L~pgG~lli~e~ 304 (369)
....|+++-.--.-. ..+..+ .++..+.|||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 122498887665322 212244 5999999999999887654
No 388
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=80.87 E-value=1.8 Score=38.85 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=42.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+..+.++|.+.| |-.+=+||.+++|+ +..-+.|.|+-|+..|++++.+
T Consensus 197 e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 456788888765 67999999999999 9999999999999999999864
No 389
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=80.49 E-value=2.7 Score=35.24 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCCHHHHHHhC--CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 64 KLSAAQIAAQM--PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 64 ~~t~~~La~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
..++++||+++ ++ ...-++.-|+.|...|++.++ ++|.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~------~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD------GDGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC------CCCcEEEecceee
Confidence 34999999999 88 999999999999999999986 4578998865443
No 390
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=80.25 E-value=1.4 Score=38.38 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL 92 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L 92 (369)
.-.+|+.|.+.|-||. +. ..+..+||+.+|+ .+.-+...||-.
T Consensus 160 Q~~vL~~A~~~GYFd~-PR-----~~~l~dLA~~lGI----Skst~~ehLRrA 202 (215)
T COG3413 160 QLEVLRLAYKMGYFDY-PR-----RVSLKDLAKELGI----SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 4569999999999999 54 6899999999999 676666666644
No 391
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.03 E-value=9.2 Score=35.27 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=49.6
Q ss_pred cceEEEEcCCh-h-HHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHH
Q 017595 207 IKQLVDVGGGL-G-VTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCL 283 (369)
Q Consensus 207 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 283 (369)
..+|.=||+|. | .++..+.+.....+++++|. +...+.+.+..-......+..+.....|+|+++-- .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899885 3 34444544433346788887 55555544332111111121112334588876653 23445
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 017595 284 TLLKNCYEAIPENGKIII 301 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~lli 301 (369)
.+++.+...++||+.++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 677888888888875543
No 392
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=79.91 E-value=1.7 Score=29.75 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=30.6
Q ss_pred CCC-CHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKL-SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~-t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..+ |..+||+.+++ ...-+++-|+.|++.|++...
T Consensus 22 ~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 22 DRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp SBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 477 99999999999 999999999999999999864
No 393
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=79.75 E-value=5.2 Score=35.23 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 27 TYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 27 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.-..+.+++.+...-.=+.+.- .||+.|... +|-++..+||+++|+ ....+++-++.|.+.|+++.
T Consensus 165 Rkka~Vq~Ai~tLSySEleAv~--~IL~~L~~~--egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~ 230 (251)
T TIGR02787 165 RKKAAVQMAINTLSYSELEAVE--HIFEELDGN--EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 230 (251)
T ss_pred HHHHHHHHHHHhccHhHHHHHH--HHHHHhccc--cccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 3344455555544444444443 688888772 158999999999999 99999999999999999985
No 394
>PRK10742 putative methyltransferase; Provisional
Probab=79.68 E-value=3.3 Score=36.78 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHhccCcCCcc--eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH
Q 017595 196 RILDSYNGFEQIK--QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ 243 (369)
Q Consensus 196 ~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 243 (369)
.+.+... +++.. +|||.=+|.|..+..++.+ +++++.++. |.+..
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaa 124 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAA 124 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 4455554 55544 9999999999999999988 456888887 54433
No 395
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=79.65 E-value=2.1 Score=41.43 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
.|.|.++|++++++ +++.++++|+.|...|++.+. +++.|.+...
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~------~~g~~~l~rd 353 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG------ERGQWVLARD 353 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec------CCCceEecCC
Confidence 48999999999999 999999999999999999863 3455666543
No 396
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=79.08 E-value=3.4 Score=37.62 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=45.8
Q ss_pred CceEEeCCCCCCCCC-----C--CEEE-eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC--CCCCcchHHHhhh
Q 017595 250 GVKHIGGNMFERIPK-----G--DAIL-MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP--MVTPEATAAAREA 319 (369)
Q Consensus 250 rv~~~~~d~~~~~p~-----~--D~v~-~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~--~~~~~~~~~~~~~ 319 (369)
+|.|++.|....++. + |+|+ .++..|.+.++ +.++|+|+|.|+ +|... -+-+.
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lv-vEtaKfmvdLrK-------- 263 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLV-VETAKFMVDLRK-------- 263 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEE-EEcchhheeCCH--------
Confidence 578888877664432 2 8765 45666666543 666889997555 66531 11000
Q ss_pred hhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 320 SMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 320 ~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
-....+ .+.+.+++++|||+.+.
T Consensus 264 -----Eq~~~F-------~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 264 -----EQLQEF-------VKKVKELAKAAGFKPVT 286 (289)
T ss_pred -----HHHHHH-------HHHHHHHHHHCCCcccc
Confidence 001112 66789999999998764
No 397
>PTZ00357 methyltransferase; Provisional
Probab=79.07 E-value=8 Score=39.39 Aligned_cols=132 Identities=16% Similarity=0.119 Sum_probs=76.4
Q ss_pred CChhhhhhcCchHHHHHHHHHHhhhhHhHH------------HH------HHhccCc---CCcceEEEEcCChhHHHHHH
Q 017595 166 MGVYEYAGNDSRFNGVFNKAMLNHTSIVMN------------RI------LDSYNGF---EQIKQLVDVGGGLGVTLNII 224 (369)
Q Consensus 166 ~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~------------~~------~~~~~~~---~~~~~vLDvG~G~G~~~~~l 224 (369)
...||.+++|+-.-..|.+++...-..... ++ +++.+.- .....|+=+|+|.|-+....
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHH
Confidence 346888999987777777776542211110 00 0111100 11246899999999887776
Q ss_pred HHhCC----CCeEEEcch-hHHH----HhCCC-----------CCCceEEeCCCCC-CCC-------------CCCEEEe
Q 017595 225 TSRYP----HIEGVNFDL-PHVI----QNAPS-----------YRGVKHIGGNMFE-RIP-------------KGDAILM 270 (369)
Q Consensus 225 ~~~~p----~~~~~~~D~-~~~~----~~a~~-----------~~rv~~~~~d~~~-~~p-------------~~D~v~~ 270 (369)
++... .++++.++- |..+ ..-+. ..+|+++..|+.+ ..+ ..|++++
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 66643 456777776 4422 11111 1358999999987 322 2388765
Q ss_pred ccccccCCh-hHHHHHHHHHHHhCCC----CCE
Q 017595 271 KWILHNWDD-EHCLTLLKNCYEAIPE----NGK 298 (369)
Q Consensus 271 ~~vlh~~~d-~~~~~~L~~~~~~L~p----gG~ 298 (369)
-- |-.|.| |-..+.|.-+.+.||+ +|.
T Consensus 799 EL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 799 EL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred hh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 43 333433 3355778888888876 664
No 398
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=78.58 E-value=3.4 Score=35.48 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHhChhHHHHhcC--CCCCCCHHHHHHhCCCCCCCC-cccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAG--PGAKLSAAQIAAQMPSRNPNT-GVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~--~~~~~t~~~La~~~~~~~~~~-~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|++.|.+.. .+-+.|+.|||+.+|+ . +.-+.+.|+.|...|++...
T Consensus 7 ~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~ 59 (199)
T TIGR00498 7 RQQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD 59 (199)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC
Confidence 4455566665310 0136899999999999 7 88999999999999999973
No 399
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=78.30 E-value=1.8 Score=30.59 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++|-++||..+|+ ...-+.+.|+.|...|+++..
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~ 61 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK 61 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 7899999999999 999999999999999999863
No 400
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=78.23 E-value=3 Score=38.10 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=65.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC----CCC-CCEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER----IPK-GDAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----~p~-~D~v~~ 270 (369)
.....+|||..++.|.=+.++++... ...++..|. +.-+..... ..++.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34567899999999999999999977 567888887 544443322 25667776665542 122 266653
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhC----CCCCEEEEEec
Q 017595 271 ------KWILHNWDD-------EH-------CLTLLKNCYEAI----PENGKIIIIDR 304 (369)
Q Consensus 271 ------~~vlh~~~d-------~~-------~~~~L~~~~~~L----~pgG~lli~e~ 304 (369)
..++..-|+ ++ -.++|+++.+.+ ||||+++-..-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 122222221 11 347899999999 99998886544
No 401
>PF13730 HTH_36: Helix-turn-helix domain
Probab=78.12 E-value=2.1 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccc
Q 017595 65 LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVL 98 (369)
Q Consensus 65 ~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l 98 (369)
.|.+.||+.+|+ ..+-+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 389999999999 999999999999999985
No 402
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=77.76 E-value=4.2 Score=36.30 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=47.9
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
|..++-+|-.- |+.|+.||++..|+ +...+-..|+.|...|++.... ..+..|+.-+....
T Consensus 18 Ea~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~----g~P~~y~av~p~~~ 78 (247)
T COG1378 18 EAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE----GRPKKYRAVPPEEL 78 (247)
T ss_pred HHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC----CCCceEEeCCHHHH
Confidence 44556666554 59999999999999 8999999999999999998641 14577887766553
No 403
>PRK13699 putative methylase; Provisional
Probab=77.73 E-value=9 Score=33.72 Aligned_cols=76 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred ceEEeCCCCC---CCCCC--CEEEec-------------cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcc
Q 017595 251 VKHIGGNMFE---RIPKG--DAILMK-------------WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA 312 (369)
Q Consensus 251 v~~~~~d~~~---~~p~~--D~v~~~-------------~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~ 312 (369)
+++..+|..+ .+|.. |+|+.. ..-.....+-....+++++|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred hHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 313 TAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 313 ~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
.........+...++++||.+...+
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
No 404
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=77.58 E-value=3.4 Score=37.00 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=24.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC--------CCeEEEcch
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP--------HIEGVNFDL 238 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~ 238 (369)
.+.+|+|+|+|+|.++..+++... .++++.++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 458999999999999999888733 358888887
No 405
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=76.73 E-value=4 Score=35.74 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
...-.|||+.+|+ .+..+..+++-|+..|+++.. +.++|..|..+...+.
T Consensus 25 ~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~------gR~~Y~iTkkG~e~l~ 74 (260)
T COG1497 25 RVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE------GRGEYEITKKGAEWLL 74 (260)
T ss_pred CCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec------CCeeEEEehhHHHHHH
Confidence 7899999999999 999999999999999999974 4679999998875443
No 406
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=76.66 E-value=2.9 Score=37.49 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=40.7
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..|.+.|.+. +..++.|||+.+|+ .+.-++|-|+.|.+.|++.+.
T Consensus 7 ~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQL---GFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 44578888885 58999999999999 999999999999999999864
No 407
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=76.50 E-value=3.3 Score=34.30 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
.|+|++||++++|+ ....++.-|+-|...|++.+..
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence 59999999999999 8999999999999999998753
No 408
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.38 E-value=34 Score=26.55 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=54.6
Q ss_pred CcceEEEEcCChhHH-HHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCC-C---CCCEEEeccccccCChh
Q 017595 206 QIKQLVDVGGGLGVT-LNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERI-P---KGDAILMKWILHNWDDE 280 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~-p---~~D~v~~~~vlh~~~d~ 280 (369)
..++|++||-|-=.. +..|+++. ..++..|+.+. .+. ..++++..|+++|. . .+|+|.+.. |++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 456999999987654 44455543 56666676322 222 68899999999952 2 238887654 445
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 281 HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 281 ~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+....+-++.++++ ..++|.-.
T Consensus 82 El~~~ildva~aVg--a~l~I~pL 103 (129)
T COG1255 82 ELQSAILDVAKAVG--APLYIKPL 103 (129)
T ss_pred HHHHHHHHHHHhhC--CCEEEEec
Confidence 56666666777665 44555443
No 409
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=76.15 E-value=2.9 Score=40.72 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=41.0
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
|...|.. ||.|+.||++.+++ ....+++.|+.| .|+|...++. ...+|++....
T Consensus 5 ~~~~L~~----g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~g---r~~~Y~l~~~~ 58 (442)
T PRK09775 5 LTTLLLQ----GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKA---RATRYALLRPL 58 (442)
T ss_pred HHHHHhc----CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccC---ceEEEEecccc
Confidence 4556665 59999999999999 999999999999 8888764221 23467776554
No 410
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=76.12 E-value=2.7 Score=41.26 Aligned_cols=70 Identities=7% Similarity=0.142 Sum_probs=56.4
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCCC
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQD 126 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~~ 126 (369)
..+..|+..|...+ +..+.++||+.+|+ +...+.+.+..|.+.|+++.... ....|.+|..+..++....
T Consensus 6 ~~e~~iL~~l~~~~--~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~----~~~~~~LT~eG~~~~~~G~ 75 (494)
T PTZ00326 6 LEENTILSKLESEN--EIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK----KSNTWTLTEEGEDYLKNGS 75 (494)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE----EEEEEEECHHHHHHHHcCC
Confidence 45667788887621 37899999999999 99999999999999999987521 3578999999997776643
No 411
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=75.69 E-value=14 Score=34.75 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh----CC----CCeEEEcch-hHHHH
Q 017595 175 DSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR----YP----HIEGVNFDL-PHVIQ 243 (369)
Q Consensus 175 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p----~~~~~~~D~-~~~~~ 243 (369)
-|+..+.|.+..+.+.. +....+. .+.+-.++++|+|+|.++..+++. +| .+++..+.. |...+
T Consensus 51 Apels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 46677777776655332 2233343 445678999999999998887766 44 567777777 54433
No 412
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.41 E-value=18 Score=33.45 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=65.1
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCC--CceEEeC-----CCCC----CCC-C-CCEE
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYR--GVKHIGG-----NMFE----RIP-K-GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--rv~~~~~-----d~~~----~~p-~-~D~v 268 (369)
.+...++|=+|+| .|..+...++.+.-.++++.|. +.-++.|++.. -+..... ++.+ ... . .|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5677899999999 6888888888888889999999 88888887641 1111111 1101 011 1 2777
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
+-+..++ ..++....++++||.+++.....+
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 7666553 446667889999999888876443
No 413
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=75.21 E-value=8.7 Score=26.14 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 29 SFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 29 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..+.+..+|...+. |++.|-.. |+.|+.+|.+.+++ +++.++.-|-.|...|++..
T Consensus 4 ~~ii~~~fG~~~~~---------V~~~Ll~~---G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 4 TLIIEEHFGEIVAK---------VGEVLLSR---GRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHC----SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcChHHHH---------HHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 34445555555554 56666664 58999999999999 99999999999999999975
No 414
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=74.88 E-value=11 Score=28.11 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHh
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLV 93 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~ 93 (369)
.+.++||+..|.+ +++|-.|||+.+|+ ...-+.|+=+.|-
T Consensus 41 l~~R~~i~~~Ll~----~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 41 LGDRIRIVNELLN----GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 4568999998877 48999999999999 7777777655554
No 415
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=74.67 E-value=4.4 Score=31.96 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCcee
Q 017595 284 TLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFC 363 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 363 (369)
.+++++++.++|||.+..... ...++.-|.++||.+.+.-..+..--
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~---------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr~ 117 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSS---------------------------------AGAVRRALQQAGFEVEKVPGFGRKRE 117 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSSE
T ss_pred HHHHHHHHHhCCCcEEEEeec---------------------------------hHHHHHHHHHcCCEEEEcCCCCCcch
Confidence 689999999999997764111 22377789999999888777766666
Q ss_pred EEEEeC
Q 017595 364 IIEFIK 369 (369)
Q Consensus 364 vi~~~~ 369 (369)
++.+.|
T Consensus 118 ~~~a~~ 123 (124)
T PF05430_consen 118 MLRAVK 123 (124)
T ss_dssp EEEEEC
T ss_pred heEEEc
Confidence 666554
No 416
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=74.48 E-value=2.5 Score=30.04 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=23.2
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHh
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLV 93 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~ 93 (369)
|+..|..+ .|+|+++||.++|+ ....+...|..+.
T Consensus 29 LLr~LA~G---~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG---QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT---S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 67788874 59999999999999 6666666665554
No 417
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=74.39 E-value=3.7 Score=31.84 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=35.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.|++.+.. +.|+.|||..+++ +-..++-++.-|...|++..
T Consensus 47 ~Il~lC~~-----~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v 87 (114)
T PF05331_consen 47 AILELCRR-----PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRV 87 (114)
T ss_pred HHHHHHCC-----CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEE
Confidence 35556654 8999999999999 88899999999999999975
No 418
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.33 E-value=6.2 Score=35.78 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCceEEeCCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 248 YRGVKHIGGNMFER---IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 248 ~~rv~~~~~d~~~~---~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..||.++.+|+.+- -|.+ |-|++..+=..++|.+...++.++.+-+.||.++|+...
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 37899999999762 2333 999999998888999999999999999999999998654
No 419
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=74.27 E-value=4.5 Score=38.06 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=33.5
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchh
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP 239 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 239 (369)
+++..+..+.+...++|||.|.|.++.-+.-.| ++++.++|-.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 444444446688999999999999998887776 6788888874
No 420
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.83 E-value=4.1 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL 92 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L 92 (369)
++..|++.|... +..+..+||+.+|+ .+..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQED---GRRSYAELAEELGL----SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHHh
Confidence 567788999885 59999999999999 776655544433
No 421
>PF13518 HTH_28: Helix-turn-helix domain
Probab=73.44 E-value=4.7 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=27.5
Q ss_pred CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccc
Q 017595 65 LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVL 98 (369)
Q Consensus 65 ~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l 98 (369)
.|+.++|+.+|+ +..-+.+|++.....|+-
T Consensus 13 ~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~~ 42 (52)
T PF13518_consen 13 ESVREIAREFGI----SRSTVYRWIKRYREGGIE 42 (52)
T ss_pred CCHHHHHHHHCC----CHhHHHHHHHHHHhcCHH
Confidence 499999999999 999999999999998853
No 422
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=73.37 E-value=21 Score=28.15 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=44.3
Q ss_pred CcceEEEEcCChhH-HHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCC----CCCEEEeccccccCCh
Q 017595 206 QIKQLVDVGGGLGV-TLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIP----KGDAILMKWILHNWDD 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p----~~D~v~~~~vlh~~~d 279 (369)
...+++|||-|.=. .+..|.+.. ..++..|. +. .+. .++.++.-|+++|-. .+|+|.+.+. |
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP----P- 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP----P- 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC----C-
Confidence 34699999988665 455555554 77888887 44 222 688999999999532 2388887764 2
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.+...-+.++++.. |.-++|.....
T Consensus 81 ~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred hHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 33344455555543 45677665543
No 423
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=73.23 E-value=6.1 Score=27.73 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=37.0
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.|...|+. +..|.++|-+.+|+ +..-+...|.-|+..|++..
T Consensus 9 ~IL~~ls~----~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 9 KILIILSK----RCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred HHHHHHHh----ccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeee
Confidence 45566666 38999999999999 99999999999999999986
No 424
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=72.81 E-value=3.6 Score=36.90 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|.+.|.+. +.+++.|||+.+++ .+.=++|-|..|...|++.+.
T Consensus 6 R~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQ---GYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 445678888875 48999999999999 999999999999999999864
No 425
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=72.59 E-value=4.6 Score=32.74 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=51.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCC----C-CEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPK----G-DAI 268 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~----~-D~v 268 (369)
.....+...+ -..-|||+|=|+|..=-++.+.+|+-+++++|..-.+--...-+.=.++.||+.+..+. + .+.
T Consensus 18 L~~a~~~v~~--~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~ 95 (160)
T PF12692_consen 18 LNWAAAQVAG--LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAA 95 (160)
T ss_dssp HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred HHHHHHHhcC--CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceE
Confidence 3344444442 23689999999999999999999999999999632111100012336777777663221 1 222
Q ss_pred EeccccccCChhH----HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LMKWILHNWDDEH----CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~~vlh~~~d~~----~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+...=+-...+++ +..+=.-+..+|.|||.++.-.+..
T Consensus 96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 2221111111122 2233334556788999777655543
No 426
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=71.87 E-value=3.7 Score=36.89 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|.+.|.+. +.+++.|||+.++. .+.-++|=|+.|...|++.+.
T Consensus 6 R~~~Il~~L~~~---~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 6 RQAAILEYLQKQ---GKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHHc---CCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 355688899886 58999999999999 999999999999999999864
No 427
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=71.66 E-value=5 Score=37.31 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=37.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
...|++.|... .+.+..+||+++|+ ....+.+.|+.|...|++.
T Consensus 6 ~~~il~~L~~~---~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i 49 (319)
T PRK11886 6 MLQLLSLLADG---DFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDI 49 (319)
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCce
Confidence 44677777763 37999999999999 9999999999999999944
No 428
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=71.61 E-value=4 Score=33.99 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
-.|..+||+.+|+ ..+-+.|.+..|...+++.+. ..+.|.++|.-.
T Consensus 75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~------~~G~Y~iNP~~~ 120 (165)
T PF05732_consen 75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI------RNGAYMINPNFF 120 (165)
T ss_pred EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc------cCCeEEECcHHh
Confidence 4588999999999 889999999999999999874 457888887543
No 429
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=71.32 E-value=3.7 Score=31.95 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++|++|||+.+.+ .++.++.+|+-|.+.|.+.--
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 47899999999999 999999999999999999864
No 430
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=71.27 E-value=14 Score=33.32 Aligned_cols=207 Identities=12% Similarity=0.082 Sum_probs=104.4
Q ss_pred CHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCCCCCChHHH-HHHhcChhHHH
Q 017595 66 SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPL-LAMAGDQAILD 144 (369)
Q Consensus 66 t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 144 (369)
+.-.|+....+ +-+.+..+++.|...|++..+ .+...+|..+..++..-.-.+.... +....+...
T Consensus 36 d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~~-------~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeGrgi-- 102 (354)
T COG1568 36 DFWKIVDYSDL----PLPLVASILEILEDEGIVKIE-------EGGVELTEKGEELAEELGIKKKYDYTCECCEGRGI-- 102 (354)
T ss_pred chHhhhhhccC----CchHHHHHHHHHHhcCcEEEe-------cCcEeehhhhHHHHHHhCCCccccccccCcCCccc--
Confidence 88899999999 888999999999999999874 4558899988877653221110000 000000000
Q ss_pred HhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhcc-CcCCcceEEEEcCChhHHHHH
Q 017595 145 IWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYN-GFEQIKQLVDVGGGLGVTLNI 223 (369)
Q Consensus 145 ~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~ 223 (369)
......+.+++ +-++....|+-...|.++....-. .+..+.=.+. +--..+.|+=+| -.-.++.+
T Consensus 103 ~l~~f~dll~k------------f~eiaK~RP~p~~~yDQgfvTpEt-tv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia 168 (354)
T COG1568 103 SLQAFKDLLEK------------FREIAKDRPEPLHQYDQGFVTPET-TVSRVALMYSRGDLEGKEIFVVG-DDDLTSIA 168 (354)
T ss_pred cchhHHHHHHH------------HHHHHhcCCCcchhcccccccccc-eeeeeeeeccccCcCCCeEEEEc-CchhhHHH
Confidence 00112222221 011111111111122221110000 0000000000 001346788888 44444444
Q ss_pred HHHhCCCCeEEEcch-hHHHHhC----CC--CCCceEEeCCCCCCCCCC-----CEEEeccccccCChhHHHHHHHHHHH
Q 017595 224 ITSRYPHIEGVNFDL-PHVIQNA----PS--YRGVKHIGGNMFERIPKG-----DAILMKWILHNWDDEHCLTLLKNCYE 291 (369)
Q Consensus 224 l~~~~p~~~~~~~D~-~~~~~~a----~~--~~rv~~~~~d~~~~~p~~-----D~v~~~~vlh~~~d~~~~~~L~~~~~ 291 (369)
++--.---++.++|+ ...++.. ++ .++++.+..|..+|+|+. |+++.--. .-. +....+|.+=..
T Consensus 169 ~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-eTi--~alk~FlgRGI~ 245 (354)
T COG1568 169 LALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-ETI--KALKLFLGRGIA 245 (354)
T ss_pred HHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-hhH--HHHHHHHhccHH
Confidence 443332236777777 4444322 22 378999999999999862 88764322 111 234566777778
Q ss_pred hCCCC---CEEEEE
Q 017595 292 AIPEN---GKIIII 302 (369)
Q Consensus 292 ~L~pg---G~lli~ 302 (369)
.||.- |++-|.
T Consensus 246 tLkg~~~aGyfgiT 259 (354)
T COG1568 246 TLKGEGCAGYFGIT 259 (354)
T ss_pred HhcCCCccceEeee
Confidence 88765 666654
No 431
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=71.11 E-value=3.3 Score=26.50 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=23.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRV 97 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~ 97 (369)
.++.+...+.+ +.|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~-----G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE-----GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH-----T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC-----CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666666 6899999999999 99999999998877764
No 432
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=71.08 E-value=5.4 Score=38.23 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=48.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-C-CCC--CCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-R-IPK--GDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~-~p~--~D~v~~~~v 273 (369)
+...+||||.|||.++.-......+ +++.+.. .++.+.+++ .++|.++.---.+ . .|. +|+++..-+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 5578999999999999888777644 4666665 445444433 1455555432211 1 122 255544333
Q ss_pred cccCChhHHHHHHHHHHHhCC
Q 017595 274 LHNWDDEHCLTLLKNCYEAIP 294 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~ 294 (369)
.-.+--+-+..-++.+.+.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 333333334445566665553
No 433
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=69.83 E-value=14 Score=30.21 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=57.6
Q ss_pred HhhhhHHHHHHHHHHhCh-------hHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCC
Q 017595 35 AMSIVLPASMQAAAELGV-------FEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGD 107 (369)
Q Consensus 35 ~~~~~~~~~l~~a~~lgl-------fd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 107 (369)
+++-|...++.++.+.++ +..+... |-|+++.+|+..++.. +-..+..-|+-|...|+++.... +
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhr--dR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~--g- 135 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHR--DRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGS--G- 135 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc--CchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCC--C-
Confidence 456677778888876553 3444433 3599999999999983 66788899999999999987421 1
Q ss_pred CCcceecChhchhhh
Q 017595 108 NQRLYSLAPVAKYFV 122 (369)
Q Consensus 108 ~~~~y~~t~~~~~~~ 122 (369)
..-+|..|+.+...+
T Consensus 136 kevTy~vTa~G~~ac 150 (199)
T COG5631 136 KEVTYEVTALGHRAC 150 (199)
T ss_pred ceEEEEEecchHHHH
Confidence 225788888776544
No 434
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=68.76 E-value=30 Score=33.05 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=56.1
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHH--HHhCCCC----CCceEEeCCCCCCCCCC-CEEEeccccccCC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHV--IQNAPSY----RGVKHIGGNMFERIPKG-DAILMKWILHNWD 278 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~--~~~a~~~----~rv~~~~~d~~~~~p~~-D~v~~~~vlh~~~ 278 (369)
.+||=|+=.-|.+++.++...|. ...|. ... ...++.. +.+++. +...++|.+ |+|++..-= +
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~PK---~ 117 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVPK---T 117 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeCC---C
Confidence 38999999999999999976663 22443 111 1111111 123333 334456665 887654321 1
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.+.....|..++..|+||+.+++.+..
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 245668899999999999998876654
No 435
>PRK09954 putative kinase; Provisional
Probab=67.99 E-value=6.8 Score=37.04 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=39.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
+..|+..|.+. +++|..+||+.+++ ....+.+.|+-|...|++.
T Consensus 5 ~~~il~~l~~~---~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN---PLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 44588888886 48999999999999 9999999999999999986
No 436
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=67.80 E-value=22 Score=32.30 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=70.3
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-C----CCCCCEEEeccccccCCh--
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-R----IPKGDAILMKWILHNWDD-- 279 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~----~p~~D~v~~~~vlh~~~d-- 279 (369)
+++|+-||.|.+...+.+..-+ .+..+|. +..++..+.. +.. ++.+|+.+ . .+..|+++...--..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 6899999999998888876422 2456776 5555544332 332 56677766 2 122399887765443321
Q ss_pred ------hHHHHHHHHHH---HhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 280 ------EHCLTLLKNCY---EAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 280 ------~~~~~~L~~~~---~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
+....++..+. +.++| +++++|.+..-.. ..+....+.|.+.|++.||
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~---------------------~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLT---------------------HDNGNTLKVILNTLEELGY 136 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhc---------------------cCchHHHHHHHHHHHhCCc
Confidence 11122333333 33455 5778887743210 0111235678888889998
Q ss_pred cceeEE
Q 017595 351 NGVNYE 356 (369)
Q Consensus 351 ~~~~~~ 356 (369)
.+...+
T Consensus 137 ~~~~~~ 142 (275)
T cd00315 137 NVYWKL 142 (275)
T ss_pred EEEEEE
Confidence 865443
No 437
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=67.65 E-value=5.5 Score=36.10 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=41.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
....|++.|... +.+++.|||+.++. .+.=++|=|..|...|++.+.
T Consensus 18 R~~~Il~~L~~~---~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 18 RREQIIQRLRQQ---GSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 455678888886 48999999999999 999999999999999999874
No 438
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=67.18 E-value=7.5 Score=34.54 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=39.9
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
...|.+.|.+. +..++.+||+.+++ .+.-++|.|..|...|.+...
T Consensus 6 ~~~Il~~l~~~---~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r~ 51 (240)
T PRK10411 6 QQAIVDLLLNH---TSLTTEALAEQLNV----SKETIRRDLNELQTQGKILRN 51 (240)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34578888775 58999999999999 999999999999999998753
No 439
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=67.15 E-value=14 Score=26.00 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=31.5
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH--hcCccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL--VTNRVLRC 100 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L--~~~g~l~~ 100 (369)
|.+.|... ++.|+++|++++|+ .+.-++-.|.-+ -.+|+--.
T Consensus 15 li~mL~rp---~GATi~ei~~atGW----q~HTvRgalsg~~kKklGl~i~ 58 (72)
T PF11994_consen 15 LIAMLRRP---EGATIAEICEATGW----QPHTVRGALSGLLKKKLGLTIT 58 (72)
T ss_pred HHHHHcCC---CCCCHHHHHHhhCC----chhhHHHHHHHHHHHhcCcEEE
Confidence 55666553 47999999999999 888887777777 55676543
No 440
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.94 E-value=30 Score=32.33 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCcceEEEEcCC-hhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGG-LGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 281 (369)
....+||=+|+| .|.++..++++ ....++++.|. +.-.+.++..... ....+..+.. ..|+|+=.-- ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~G-----~~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECVG-----GRG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECCC-----CCc
Confidence 345788889976 56677777775 55567877776 5555555432221 1111111111 1276653211 011
Q ss_pred HHHHHHHHHHhCCCCCEEEEEec
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
....++...+.|+|||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 12467888999999999998764
No 441
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=66.34 E-value=46 Score=30.54 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=50.8
Q ss_pred cceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCC-CEEEeccccccCChhHHH
Q 017595 207 IKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKG-DAILMKWILHNWDDEHCL 283 (369)
Q Consensus 207 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~-D~v~~~~vlh~~~d~~~~ 283 (369)
..++|=+|+| .|.++..+++...--.++.+|. +.-.+.+... .+ .|..+..+.+ |+|+=.-- . .
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~--i~~~~~~~~g~Dvvid~~G-----~---~ 211 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EV--LDPEKDPRRDYRAIYDASG-----D---P 211 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cc--cChhhccCCCCCEEEECCC-----C---H
Confidence 4567777865 7888888888764334556676 5555544432 11 1211112223 77764321 1 2
Q ss_pred HHHHHHHHhCCCCCEEEEEec
Q 017595 284 TLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~lli~e~ 304 (369)
..++.+.+.|+|+|++++.-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 457788889999999998765
No 442
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=66.23 E-value=32 Score=31.24 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=44.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCe----EEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCCh
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIE----GVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDD 279 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 279 (369)
..+...||-+|++.|....-|.+.||++. .+.+|........+..++|+++.. .+++
T Consensus 56 ~~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~-------------------ffte 116 (294)
T PF01358_consen 56 LDGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR-------------------FFTE 116 (294)
T ss_dssp STT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES----------------------H
T ss_pred CCCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh-------------------hCCH
Confidence 34568999999999999999999998865 888887444434443334444332 1344
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+. ++++++.+.+ ..|+|.|.-.
T Consensus 117 e~----~~~~~~~~~~-~illISDIRS 138 (294)
T PF01358_consen 117 EY----ARRLRDKLNL-KILLISDIRS 138 (294)
T ss_dssp HH----HHHHHHHHTT-EEEEEE----
T ss_pred HH----HHHHHhhcCC-CeEEEEeccc
Confidence 43 4455556666 6777777743
No 443
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=65.97 E-value=17 Score=27.78 Aligned_cols=84 Identities=25% Similarity=0.260 Sum_probs=46.3
Q ss_pred EEcCChhHHHHHHHHhC--CCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC--CC-----CCCEEEeccccccCChhH
Q 017595 212 DVGGGLGVTLNIITSRY--PHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER--IP-----KGDAILMKWILHNWDDEH 281 (369)
Q Consensus 212 DvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~p-----~~D~v~~~~vlh~~~d~~ 281 (369)
=+|+| .++..+++.. .+.+++++|. +..++.++.. .+.++.||..++ +. .++.+++..- +|+.
T Consensus 3 I~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~ 75 (116)
T PF02254_consen 3 IIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEE 75 (116)
T ss_dssp EES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHH
T ss_pred EEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC----CHHH
Confidence 34554 4555444442 3457888888 6666665544 388999999873 21 2365554322 3333
Q ss_pred HHHHHHHHHHhCCCCCEEEEEe
Q 017595 282 CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e 303 (369)
.. .+....+.+.|..++++.-
T Consensus 76 n~-~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 76 NL-LIALLARELNPDIRIIARV 96 (116)
T ss_dssp HH-HHHHHHHHHTTTSEEEEEE
T ss_pred HH-HHHHHHHHHCCCCeEEEEE
Confidence 33 3444456667777777543
No 444
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.67 E-value=13 Score=31.18 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=30.0
Q ss_pred CEEEeccccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDD----------EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+|++++.||++.. +...+++.++..+|+|+..+|....++
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999998854 335567777777778887666655544
No 445
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=65.36 E-value=9.4 Score=34.59 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
+..++++||++++- +....-++.-|+.|...|++.++ ++|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p--~is~~ev~~sL~~L~~~glikk~------~~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFP--KISAEQVKESLDLLERLGLIKKN------EDGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHCCCeeEC------CCCcEEeecce
Confidence 34489999999882 22788899999999999999985 46789888653
No 446
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=65.04 E-value=7.8 Score=32.50 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=39.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..|++.|.+. |-+|=++||..+|+ ...-++++|..|...|++...
T Consensus 21 ~~v~~~l~~k---ge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK---GELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc---CCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 3577888774 36999999999999 999999999999999999864
No 447
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=64.81 E-value=5.3 Score=31.11 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR-NPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
|..+.-|++.|.+.+ ++.|+++|.+.+.-. ++.+..-+-|.|+.|...|++.+...++ +...|....
T Consensus 7 T~~R~~Il~~l~~~~--~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~--~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESP--EHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGD--GESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHS--SSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETT--SEEEEEESS
T ss_pred CHHHHHHHHHHHcCC--CCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCC--CcceEeecC
Confidence 456777899998764 599999999887531 1124556899999999999998863321 234677765
No 448
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=64.69 E-value=8.7 Score=33.52 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 61 PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 61 ~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
||..++..+||+.+|+ ....++.-|+.|.+.|+|+..
T Consensus 27 pG~~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~~ 63 (224)
T PRK11534 27 PDEKLRMSLLTSRYAL----GVGPLREALSQLVAERLVTVV 63 (224)
T ss_pred CCCcCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 4468899999999999 899999999999999999864
No 449
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=64.40 E-value=34 Score=25.65 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=45.8
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc------cCCHHHHHHHHH
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR------ERTTQEFMALAN 346 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~t~~e~~~ll~ 346 (369)
+|=|++.++..++|+.+...-+ +.+++.=. |.. + ....+... .-.|+++. ...++++.+.+.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~--~~~ifTfA--P~T---~----~L~~m~~i-G~lFP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR--GSLIFTFA--PRT---P----LLALMHAI-GKLFPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc--CcEEEEEC--CCC---H----HHHHHHHH-hccCCCCCCCCcEEEeCHHHHHHHHH
Confidence 4556888999999999887643 55554321 111 1 11111100 11133322 227899999999
Q ss_pred HcCCcceeEEEecCc
Q 017595 347 EAGFNGVNYECFVCN 361 (369)
Q Consensus 347 ~aGf~~~~~~~~~~~ 361 (369)
++||++.+...+..+
T Consensus 72 ~~g~~~~r~~ris~g 86 (97)
T PF07109_consen 72 AAGWRIGRTERISSG 86 (97)
T ss_pred hCCCeeeecccccCc
Confidence 999999988766533
No 450
>PRK12423 LexA repressor; Provisional
Probab=64.35 E-value=9.7 Score=32.82 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=30.3
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+-|..|||+++|+. .+..+++.|+.|+..|+++..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 56999999999951 566889999999999999874
No 451
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=64.17 E-value=6 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-+|+..|++++++ +-.+.++.|+.|...|++...
T Consensus 41 ~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 41 IVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred EEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999 999999999999999999765
No 452
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=64.12 E-value=11 Score=37.72 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=66.7
Q ss_pred HhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCe-EEEcchhHHHHhCCCCCCceEEeCCCCCC---C
Q 017595 187 LNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIE-GVNFDLPHVIQNAPSYRGVKHIGGNMFER---I 262 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---~ 262 (369)
++.+.+.+-.+-+.|.-+.....|||+||..|.+..-.++..|--+ ++++|+..+.. .+++.....|+..+ +
T Consensus 25 rsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp----~~~c~t~v~dIttd~cr~ 100 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP----IPNCDTLVEDITTDECRS 100 (780)
T ss_pred hHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc----CCccchhhhhhhHHHHHH
Confidence 3344444455666665355778999999999999999999988443 68999844322 23444444555431 1
Q ss_pred C--------CCCEEEec---cccccCChh------HHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 263 P--------KGDAILMK---WILHNWDDE------HCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 263 p--------~~D~v~~~---~vlh~~~d~------~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
+ ..|+|+.- +|--.|..+ -....|+-+..-|+-||. ++...+.+.+
T Consensus 101 ~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~-fvtkvfrs~d 163 (780)
T KOG1098|consen 101 KLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGT-FVTKVFRSED 163 (780)
T ss_pred HHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCc-cccccccCCc
Confidence 1 12665422 222222211 122445555566777887 4455555443
No 453
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=63.57 E-value=7.8 Score=34.74 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=41.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..|++.|.+. |.++++|||+.++. .+.=++|=|+.|...|++.+.
T Consensus 7 ~~~Il~~l~~~---g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 7 HQKILELLKEK---GKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHc---CcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 45688899886 59999999999999 999999999999999999974
No 454
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=63.09 E-value=33 Score=33.18 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=57.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEec
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMK 271 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~ 271 (369)
++.+.+..+..-...+|+=+|+|. |......++.+ +.++++.|. |...+.+... .+..+ +..+.....|+|+..
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~-G~~~~--~~~e~v~~aDVVI~a 264 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME-GYEVM--TMEEAVKEGDIFVTT 264 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc-CCEEc--cHHHHHcCCCEEEEC
Confidence 455555444223568999999995 44455555544 558888887 5555555432 22222 111122334988764
Q ss_pred cccccCChhHHHHHHHH-HHHhCCCCCEEEEEec
Q 017595 272 WILHNWDDEHCLTLLKN-CYEAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~-~~~~L~pgG~lli~e~ 304 (369)
-- ...++.. ..+.||+||+++.+-.
T Consensus 265 tG--------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 265 TG--------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CC--------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 21 1235555 4889999998887664
No 455
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=63.02 E-value=21 Score=26.83 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=45.0
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCC----CCCCCcccHHHHHHHHhcCccccccc--cCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPS----RNPNTGVMLDRILRLLVTNRVLRCSL--SSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~--~~~~~~~~~y~~t~~~~~~~~ 123 (369)
|+-.|.. +|.+--+|++.++- ..+.++.-+.+.|+-|...|++.... .+.+.....|++|+.++.++.
T Consensus 9 iL~~L~~----~~~~GYei~~~l~~~~~~~~~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l~ 82 (100)
T TIGR03433 9 ILKTLSL----GPLHGYGIAQRIQQISEDVLQVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQLA 82 (100)
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHcCCccccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHH
Confidence 4455554 37787777776411 01227788999999999999998731 111222357999999987664
No 456
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=62.41 E-value=9.1 Score=31.17 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=35.8
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVL 98 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l 98 (369)
.-|+|+|-.. +.+|-++||..+|+ +..-++++|..|...+++
T Consensus 4 ~~v~d~L~~~---~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 4 FLVLDALMRN---GCVTEEDLAELLGI----KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred EeehHHHHhc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcc
Confidence 3578888765 48999999999999 999999999999995554
No 457
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=62.23 E-value=12 Score=32.88 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 61 PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 61 ~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
||.+++-.+||+.+|+ ....++.-|..|+..|+|...
T Consensus 36 pG~~l~e~~La~~~gv----SrtPVReAL~rL~~eGlv~~~ 72 (230)
T COG1802 36 PGERLSEEELAEELGV----SRTPVREALRRLEAEGLVEIE 72 (230)
T ss_pred CCCCccHHHHHHHhCC----CCccHHHHHHHHHHCCCeEec
Confidence 4469999999999999 999999999999999999975
No 458
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=61.98 E-value=8.9 Score=26.51 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
-.+-.|++.|...| +.++..+|...+++. ...-+-+.|..|...|.|.... ..+-.|+++.
T Consensus 4 ~~ee~Il~~L~~~g---~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~~----~~PP~W~l~~ 64 (66)
T PF02295_consen 4 DLEEKILDFLKELG---GSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKEG----GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHHT---SSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEEC----SSSTEEEE-H
T ss_pred hHHHHHHHHHHhcC---CccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeCC----CCCCceEecc
Confidence 45667889998874 556666666555510 4789999999999999998641 1345666653
No 459
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=61.97 E-value=6.4 Score=33.47 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=40.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
-+..|.+.|... +..++.+||+.++. .+.-++|=|..|+..|++.+
T Consensus 8 R~~~Il~~l~~~---~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 8 RQKALQELIEEN---PFITDEELAEKFGV----SIQTIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHHHC---CCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence 344577888886 58999999999999 99999999999999999985
No 460
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=61.68 E-value=11 Score=36.69 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=52.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEE------Ecch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCCh
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGV------NFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDD 279 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 279 (369)
.++|+=||||+=..+.++--+-.+++++ ++|. +..-+.+.+ +.+ ...+..+..+.+|+|++. .||
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lPD 107 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TPD 107 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CCh
Confidence 4899999999655555544333344444 2222 112222211 122 223322234567988754 355
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.....+.+++...||||..|...+-+
T Consensus 108 t~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 108 KQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred HHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 55667779999999999988887654
No 461
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=61.54 E-value=8.7 Score=32.35 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=30.7
Q ss_pred CCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccc
Q 017595 64 KLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 64 ~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
-.|-.+|+..+ |+ .+.-++|+|+.|+..|++..
T Consensus 70 fpSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~r 103 (177)
T PF03428_consen 70 FPSNAQLAERLNGM----SERTLRRHLARLVEAGLIVR 103 (177)
T ss_pred ecCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeee
Confidence 45789999999 99 99999999999999999986
No 462
>PRK10736 hypothetical protein; Provisional
Probab=61.07 E-value=9.2 Score=36.32 Aligned_cols=52 Identities=8% Similarity=-0.066 Sum_probs=42.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
..|++.|.. .|.++++|+.++|+ +...+...|-.|.-.|++... .+++|+.-
T Consensus 311 ~~v~~~l~~----~~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~~------~g~~~~~~ 362 (374)
T PRK10736 311 PELLANVGD----EVTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAAV------PGGYVRLR 362 (374)
T ss_pred HHHHHhcCC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEEc------CCcEEEEe
Confidence 457777764 38999999999999 999999999999999999875 34566553
No 463
>PRK01381 Trp operon repressor; Provisional
Probab=60.99 E-value=35 Score=25.67 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL 92 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L 92 (369)
.+.+++|+..|.. |++|--|||+.+|+ .-.-+.|.=++|
T Consensus 41 l~~R~~I~~~L~~----g~~sQREIa~~lGv----SiaTITRgsn~L 79 (99)
T PRK01381 41 LGTRVRIVEELLR----GELSQREIKQELGV----GIATITRGSNSL 79 (99)
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHhCC----ceeeehhhHHHh
Confidence 3678999999988 48999999999999 555555443333
No 464
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=60.70 E-value=8.4 Score=24.18 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHH
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILR 90 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~ 90 (369)
+.|+.+||+.+|+ ...-+.|+|+
T Consensus 21 G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 5999999999999 7777766653
No 465
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=60.58 E-value=9.6 Score=33.20 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=37.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|++.+.++. ++.|..|||+++++ .+.-++.++..|+..|++...
T Consensus 166 ~Vl~~~~~g~--~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPG--VQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCC--CCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 4566666521 26899999999999 999999999999999999864
No 466
>PRK06545 prephenate dehydrogenase; Validated
Probab=60.51 E-value=48 Score=31.34 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=45.3
Q ss_pred eEEEEcCCh--hHHHHHHHHhCCCCeEEEcchh-HHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHH
Q 017595 209 QLVDVGGGL--GVTLNIITSRYPHIEGVNFDLP-HVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTL 285 (369)
Q Consensus 209 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~ 285 (369)
+|.=||+|. |.++..+.+..+++.+++.|.. .....+....-+.-...+..+.....|+|+++- |.+....+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilav-----P~~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAV-----PVDATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeC-----CHHHHHHH
Confidence 466678873 4566667666677777777762 222222211111101111111123359888765 33556788
Q ss_pred HHHHHH-hCCCCC
Q 017595 286 LKNCYE-AIPENG 297 (369)
Q Consensus 286 L~~~~~-~L~pgG 297 (369)
++++.. .++|+.
T Consensus 77 l~~l~~~~l~~~~ 89 (359)
T PRK06545 77 LAELADLELKPGV 89 (359)
T ss_pred HHHHhhcCCCCCc
Confidence 888887 478874
No 467
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=60.39 E-value=4.4 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLV 93 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~ 93 (369)
.+.++++||..+|+ ++..+.|..+...
T Consensus 7 ~~~~l~~iA~~~g~----S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF----SPSYFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS-----HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 37999999999999 9999988877654
No 468
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=59.47 E-value=16 Score=26.69 Aligned_cols=52 Identities=12% Similarity=0.306 Sum_probs=43.1
Q ss_pred HHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 43 SMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 43 ~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++....+..++..|... .+.++.+|+..+++ ....+.+.|..|...|++...
T Consensus 21 ~l~~~~r~~il~~l~~~---~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 21 ALADPTRLEILSLLAEG---GELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HhCCHHHHHHHHHHHhc---CCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 34444677788888773 27899999999999 999999999999999999874
No 469
>PRK08507 prephenate dehydrogenase; Validated
Probab=59.33 E-value=38 Score=30.55 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=47.2
Q ss_pred eEEEEcCCh--hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHH
Q 017595 209 QLVDVGGGL--GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTL 285 (369)
Q Consensus 209 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~ 285 (369)
+|.=||+|. +.++..+.+.....+++++|. +...+.+.+..-+.. ..+.. +....|+|+++- |++....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 466678874 345566665544457888887 555554433221111 11211 122358887664 45666788
Q ss_pred HHHHHHhCCCCCEE
Q 017595 286 LKNCYEAIPENGKI 299 (369)
Q Consensus 286 L~~~~~~L~pgG~l 299 (369)
++++.. ++|+..+
T Consensus 75 ~~~l~~-l~~~~iv 87 (275)
T PRK08507 75 LPKLLD-IKENTTI 87 (275)
T ss_pred HHHHhc-cCCCCEE
Confidence 888888 8887633
No 470
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=59.27 E-value=49 Score=32.87 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=56.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC----CCeEEEcch-hHHHHhCCCC------C-CceEEeCCCCC-CCC----C---
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP----HIEGVNFDL-PHVIQNAPSY------R-GVKHIGGNMFE-RIP----K--- 264 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~-~~p----~--- 264 (369)
....+|.|-.||+|.+.....+... ++...|++. +.....++.. . .+....+|-+. |.. .
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4456999999999999888666643 377888886 5554443321 1 23444444443 322 1
Q ss_pred CCEEEeccccc--cC--------------------ChhHH-HHHHHHHHHhCCCCCEEEEEe
Q 017595 265 GDAILMKWILH--NW--------------------DDEHC-LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~D~v~~~~vlh--~~--------------------~d~~~-~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|+..--+. .| +.... ...++.+...|+|||+..|+-
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 15554443321 01 11222 577888888888887655443
No 471
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.26 E-value=20 Score=31.05 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 45 QAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 45 ~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-...+.+++..+...| +.++.|+.+.+++ +..-++-+||.|.+.++++..
T Consensus 99 ~ns~R~~Iy~~i~~nP---G~~lsEl~~nl~i----~R~TlRyhlriLe~~~li~a~ 148 (240)
T COG3398 99 LNSKRDGIYNYIKPNP---GFSLSELRANLYI----NRSTLRYHLRILESNPLIEAG 148 (240)
T ss_pred hhhhHHHHHHHhccCC---CccHHHHHHhcCC----ChHHHHHHHHHHHhCcchhhh
Confidence 3345677888887764 8999999999999 889999999999999999864
No 472
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=58.98 E-value=12 Score=32.37 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 62 GAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 62 ~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|..++-.+||+.+|+ ....++.-|+.|...|+|+..
T Consensus 32 G~~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~ 67 (212)
T TIGR03338 32 GAKLNESDIAARLGV----SRGPVREAFRALEEAGLVRNE 67 (212)
T ss_pred CCEecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 458899999999999 999999999999999999864
No 473
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=58.94 E-value=12 Score=29.38 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=39.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.|.|.++||..++- +..-++..|.+|...|+++.. +++.|..+....
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~~------ed~~i~i~~~~~ 98 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEID------EDGVIYIPNWEK 98 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe------cCCeEEeecHHH
Confidence 49999999999999 999999999999999999875 456666665433
No 474
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=58.64 E-value=54 Score=29.69 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=47.3
Q ss_pred eEEEEcCCh--hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHH
Q 017595 209 QLVDVGGGL--GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTL 285 (369)
Q Consensus 209 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~ 285 (369)
+|.=||+|. |.++..|.++ +.+++++|. +...+.+.....+.....+. +.....|+|+++- |.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 456678774 3455555554 356788887 65555544332222111111 1123349888764 44566788
Q ss_pred HHHHHHhCCCCCE
Q 017595 286 LKNCYEAIPENGK 298 (369)
Q Consensus 286 L~~~~~~L~pgG~ 298 (369)
++++...++|+..
T Consensus 74 ~~~l~~~l~~~~i 86 (279)
T PRK07417 74 SEQLIPALPPEAI 86 (279)
T ss_pred HHHHHHhCCCCcE
Confidence 8999988888743
No 475
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=58.37 E-value=22 Score=26.22 Aligned_cols=35 Identities=3% Similarity=0.096 Sum_probs=27.7
Q ss_pred cHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcC
Q 017595 84 MLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLN 124 (369)
Q Consensus 84 ~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~ 124 (369)
.+.=-+..|...|+++.+ ..|.|++|+.++.++..
T Consensus 56 ri~Wa~~~L~~aGli~~~------~rG~~~iT~~G~~~l~~ 90 (92)
T PF14338_consen 56 RIRWARSYLKKAGLIERP------KRGIWRITEKGRKALAE 90 (92)
T ss_pred hHHHHHHHHHHCCCccCC------CCCceEECHhHHHHHhh
Confidence 444467889999999875 57899999999977654
No 476
>PRK01905 DNA-binding protein Fis; Provisional
Probab=58.20 E-value=25 Score=25.00 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=38.9
Q ss_pred cccCCchhhhhhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHH
Q 017595 10 KHKHNEEEEEEEENEEDTYSFAMQLAMS---IVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLD 86 (369)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~ 86 (369)
|.++|++++.- ..-.. .+.+...+ .....++...-+--+-..|... .-+..+.|+.+|+ +...+.
T Consensus 1 ~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~l~~~E~~~i~~aL~~~----~gn~s~aAr~LGI----srstL~ 68 (77)
T PRK01905 1 MSKHNIEQCIR-DSLDQ---YFRDLDGSNPHDVYDMVLSCVEKPLLEVVMEQA----GGNQSLAAEYLGI----NRNTLR 68 (77)
T ss_pred CCcccHHHHHH-HHHHH---HHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHCC----CHHHHH
Confidence 35678777765 22222 22333221 1222233333333355666663 4578899999999 888777
Q ss_pred HHHHH
Q 017595 87 RILRL 91 (369)
Q Consensus 87 ~~L~~ 91 (369)
+.|+-
T Consensus 69 rklkk 73 (77)
T PRK01905 69 KKLQQ 73 (77)
T ss_pred HHHHH
Confidence 76664
No 477
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=57.65 E-value=1e+02 Score=28.46 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=61.5
Q ss_pred CcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hH-HHHhCCCCCCceEEeC-CCCCCCCCCCEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PH-VIQNAPSYRGVKHIGG-NMFERIPKGDAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~~~rv~~~~~-d~~~~~p~~D~v~~~~vlh~~~d~~ 281 (369)
...+|+=||+| .|......+.....-++++++. +. ..+.+.+... ..+.. |..+.....|+|+..-.--+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~----- 250 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPH----- 250 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCc-----
Confidence 45889999987 4444444444422345677776 33 3333433322 22222 11112334599887754222
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 347 (369)
...+++.+.+.. +++..+++|...|.+..+.- . ..++-..++.++|+++.++
T Consensus 251 ~~~~~~~~~~~~-~~~~~~viDlavPrdi~~~v------------~-~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 251 YAKIVERAMKKR-SGKPRLIVDLAVPRDIEPEV------------G-ELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred hHHHHHHHHhhC-CCCCeEEEEeCCCCCCchhh------------c-cCCCcEEEEHHHhHHHHHH
Confidence 123344443333 34456677887765533210 0 0125556677777777653
No 478
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=57.59 E-value=30 Score=34.39 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=56.1
Q ss_pred CcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC--------------C--------
Q 017595 206 QIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE--------------R-------- 261 (369)
Q Consensus 206 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~--------------~-------- 261 (369)
...+++=+|+|. |..+..+++.. +.+++++|. +...+.++.. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 358999999995 46666666664 456888887 7676666543 22333333211 0
Q ss_pred C----CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 262 I----PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 262 ~----p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+ .+.|+++..-.+.--+ ...-+.++..+.||||+.++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 1 2249987665443322 223467788899999987653
No 479
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=57.46 E-value=11 Score=32.26 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=31.9
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++|-.+||+.+|+ .+.-+.|.|+.|...|++...
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~~ 201 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISAH 201 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 7889999999999 999999999999999999863
No 480
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=57.40 E-value=7.6 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=30.0
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..|..|||+.+|+ ++..++.++..+...|.+.+
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHHH
Confidence 6999999999999 99999999999988887754
No 481
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=57.04 E-value=12 Score=25.12 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVT 94 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~ 94 (369)
-++.|++.|-+. +..|+++||..+++ .++-+...+..|-.
T Consensus 6 rq~~Ll~~L~~~---~~~~~~ela~~l~~----S~rti~~~i~~L~~ 45 (59)
T PF08280_consen 6 RQLKLLELLLKN---KWITLKELAKKLNI----SERTIKNDINELNE 45 (59)
T ss_dssp HHHHHHHHHHHH---TSBBHHHHHHHCTS-----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC---CCCcHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 466788888764 48999999999999 88888887777763
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.79 E-value=16 Score=30.54 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCCcccHHHHHHHHhcCcccccc
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR-NPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+-.+.-|++.|...+ +++|+++|.+.+.-. ++.+..-+.|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~~--~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQP--GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 456778899997752 599999999887531 222567788999999999999875
No 483
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=56.19 E-value=17 Score=31.68 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 61 PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 61 ~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
||..++..+||+.+|+ ....++.-|+.|...|+|+..
T Consensus 31 pG~~L~e~~La~~lgV----SRtpVREAL~~L~~eGLV~~~ 67 (221)
T PRK11414 31 PGARLITKNLAEQLGM----SITPVREALLRLVSVNALSVA 67 (221)
T ss_pred CCCccCHHHHHHHHCC----CchhHHHHHHHHHHCCCEEec
Confidence 4468889999999999 999999999999999999864
No 484
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=56.05 E-value=9.9 Score=28.98 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=37.0
Q ss_pred hhHHHHhcCC-CCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 52 VFEIIAKAGP-GAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 52 lfd~L~~~~~-~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
.||.|..+-| -.-+|+..||+++++ +-.+-++.|+.|++.|++....
T Consensus 46 ~~~kl~kEV~~~K~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 46 TYDKLLKEVPKMKLITPSVLSERLKI----NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp HHHHHHHHCTTSSCECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHhccCcEeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEEe
Confidence 4555543211 125899999999999 9999999999999999998763
No 485
>PRK11642 exoribonuclease R; Provisional
Probab=56.03 E-value=15 Score=38.94 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=36.7
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|++.|...+ .|++..+|++.++++.......|.+.|+.|...|.+...
T Consensus 24 Il~~l~~~~--~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~ 71 (813)
T PRK11642 24 ILEHLTKRE--KPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFT 71 (813)
T ss_pred HHHHHHhcC--CCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 566665532 599999999999993222345699999999999999864
No 486
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=55.97 E-value=18 Score=24.20 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=40.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhc---CccccccccCCCCCCcceecChhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVT---NRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~---~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
++.+|..+.+. .++..-|+.+++ .++.+.+.|+.|.. .-++.. .++.+.+|+.+
T Consensus 3 ~l~~f~~v~~~-----gs~~~AA~~l~i----s~~~vs~~i~~LE~~lg~~Lf~r-------~~~~~~lT~~G 59 (60)
T PF00126_consen 3 QLRYFLAVAET-----GSISAAAEELGI----SQSAVSRQIKQLEEELGVPLFER-------SGRGLRLTEAG 59 (60)
T ss_dssp HHHHHHHHHHH-----SSHHHHHHHCTS----SHHHHHHHHHHHHHHHTS-SEEE-------CSSSEEE-HHH
T ss_pred HHHHHHHHHHh-----CCHHHHHHHhhc----cchHHHHHHHHHHHHhCCeEEEE-------CCCCeeEChhh
Confidence 45678888874 499999999999 99999999999887 346665 24568887765
No 487
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=55.78 E-value=53 Score=31.45 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=52.9
Q ss_pred ceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCCC------CCCCCEEEeccccccC
Q 017595 208 KQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFER------IPKGDAILMKWILHNW 277 (369)
Q Consensus 208 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~~------~p~~D~v~~~~vlh~~ 277 (369)
.+||=|||| .|..+.+.+.+..+-++++.|. +.-+.++... .+++....|..+. +.+.|+|+..---++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 478889987 6777777777776688999998 5666666543 5899999998872 123377765433222
Q ss_pred ChhHHHHHHHHHHHh
Q 017595 278 DDEHCLTLLKNCYEA 292 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~ 292 (369)
..++++.|.+.
T Consensus 81 ----~~~i~ka~i~~ 91 (389)
T COG1748 81 ----DLTILKACIKT 91 (389)
T ss_pred ----hHHHHHHHHHh
Confidence 23555555543
No 488
>PRK08818 prephenate dehydrogenase; Provisional
Probab=55.50 E-value=44 Score=31.83 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=43.7
Q ss_pred cceEEEEcC-C--hhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHH
Q 017595 207 IKQLVDVGG-G--LGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCL 283 (369)
Q Consensus 207 ~~~vLDvG~-G--~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 283 (369)
..+|.=||+ | .|.++..|.+. .+.+++++|.. +. ...+..+...+.|+|+++--. ....
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~---------d~---~~~~~~~~v~~aDlVilavPv-----~~~~ 65 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPA---------DP---GSLDPATLLQRADVLIFSAPI-----RHTA 65 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCC---------cc---ccCCHHHHhcCCCEEEEeCCH-----HHHH
Confidence 357888887 6 34555566555 37788888852 00 000111113345998877543 5567
Q ss_pred HHHHHHHHh---CCCCC
Q 017595 284 TLLKNCYEA---IPENG 297 (369)
Q Consensus 284 ~~L~~~~~~---L~pgG 297 (369)
++|+++... |+||.
T Consensus 66 ~~l~~l~~~~~~l~~~~ 82 (370)
T PRK08818 66 ALIEEYVALAGGRAAGQ 82 (370)
T ss_pred HHHHHHhhhhcCCCCCe
Confidence 888888875 78865
No 489
>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=55.39 E-value=13 Score=27.89 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=38.8
Q ss_pred HhChhHHHHhc-CCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 49 ELGVFEIIAKA-GPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 49 ~lglfd~L~~~-~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+-.+++.+.+. +...-+|+-.||.++|+ +-...+..||.|...|++....
T Consensus 43 dee~~~ki~KEV~~~r~VTpy~la~r~gI----~~SvAr~vLR~LeeeGvv~lvs 93 (107)
T COG4901 43 DEELLDKIRKEVPRERVVTPYVLASRYGI----NGSVARIVLRHLEEEGVVQLVS 93 (107)
T ss_pred cHHHHHHHHHhcccceeecHHHHHHHhcc----chHHHHHHHHHHHhCCceeeec
Confidence 33455555442 11237899999999999 9999999999999999998763
No 490
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.33 E-value=56 Score=29.70 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=48.2
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------------------------CCceEEeCCCCCCC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------------------------RGVKHIGGNMFERI 262 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------~rv~~~~~d~~~~~ 262 (369)
.+|.=||+|.-..+.+.+-...+.+++++|. +..++.+.+. .++.+ ..|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 4678889985544443333333456777776 5444433211 12222 22322223
Q ss_pred CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 263 PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 263 p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
...|+|+.+-. ... +....+++++.+.++|+..|..
T Consensus 83 ~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 KDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred cCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEEE
Confidence 34588876632 111 3456888999998887764433
No 491
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=55.26 E-value=17 Score=30.57 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=40.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|+|.|...| ...|+-+||+++|+ +..-+-|.|.-|...|.|...
T Consensus 5 ~~~~i~~~l~~~~--~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 5 CASLILTLLSSSG--DKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecC
Confidence 3567899998863 26999999999999 888899999999999999653
No 492
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=55.22 E-value=1.3e+02 Score=26.29 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=53.0
Q ss_pred CCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeC---CCCCC---C-CCC-CEEEecccc
Q 017595 205 EQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGG---NMFER---I-PKG-DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~~---~-p~~-D~v~~~~vl 274 (369)
....+||..|+|. |..+..+++... .+++..+. +...+.++....-.++.. +.... . ... |+++-..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-- 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC--
Confidence 5668999999985 777777777654 67777776 444433322211111111 11000 0 122 7776432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+.. ..++.+.+.|+++|+++......
T Consensus 210 ---~~~---~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 210 ---GGP---ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ---CCH---HHHHHHHHhcccCCEEEEEccCC
Confidence 211 35677788999999999876543
No 493
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=55.18 E-value=12 Score=32.79 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|+|-++||..+|+ ...-+.|.|+.|...|++...
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~~ 217 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAVK 217 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999973
No 494
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=55.11 E-value=13 Score=25.24 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCCHHHHHHhCCCCCCCCc-ccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 64 KLSAAQIAAQMPSRNPNTG-VMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+++.+++.+++|. +. ......|..+...|++.. +++++++|+.+.
T Consensus 20 Gi~~~~~~~~~g~----~~~~~~~~~l~~l~~~Gll~~-------~~~~l~lT~~G~ 65 (66)
T PF06969_consen 20 GIDLSEFEQRFGI----DFAEEFQKELEELQEDGLLEI-------DGGRLRLTEKGR 65 (66)
T ss_dssp EEEHHHHHHHTT------THHH-HHHHHHHHHTTSEEE--------SSEEEE-TTTG
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHHCCCEEE-------eCCEEEECcccC
Confidence 7999999999998 53 333777999999999987 468999998764
No 495
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=54.98 E-value=11 Score=31.79 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=32.1
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|+|-++||+.+|+ ...-+.|.|+.|...|++...
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~ 176 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISIH 176 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 7899999999999 999999999999999999863
No 496
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.10 E-value=1.4e+02 Score=26.11 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=45.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCC--CeEEEcch--hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPH--IEGVNFDL--PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDE 280 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~ 280 (369)
+..+.||-.||..|..+.++++.+.+ ..++.... +.+.+-+.+ .++.....|. -+++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV------------------~~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDV------------------SKPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEecc------------------CChH
Confidence 35678999999999999999988743 23322221 222222111 1233333332 3456
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 017595 281 HCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 281 ~~~~~L~~~~~~L~pgG~lli 301 (369)
+.+++.+.+++- |+|+|=+
T Consensus 66 ~V~~v~~evr~~--~~Gkld~ 84 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDL 84 (289)
T ss_pred HHHHHHHHHhhC--CCCceEE
Confidence 778888888876 7776644
No 497
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=53.98 E-value=6.8 Score=26.01 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
|-++...||++.|+ ....+-.-||-|.++|+++.
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIes 36 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIES 36 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceee
Confidence 36788999999999 88999999999999999985
No 498
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=53.65 E-value=1.1e+02 Score=24.97 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=42.2
Q ss_pred CcceEEEEcCChhHH--HHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CCCCCCEEEeccccccCChhHH
Q 017595 206 QIKQLVDVGGGLGVT--LNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RIPKGDAILMKWILHNWDDEHC 282 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~ 282 (369)
...+||=||||.=.. +..|++... ++++++ |...+.....+.+.+....+.+ ++...|+|+..- ++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga--~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA--FVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-----NQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC-----CCHHH
Confidence 458899999995543 344555544 444444 3322222223456666655554 455558777642 33444
Q ss_pred HHHHHHHHHh
Q 017595 283 LTLLKNCYEA 292 (369)
Q Consensus 283 ~~~L~~~~~~ 292 (369)
-..+....+.
T Consensus 84 N~~i~~~a~~ 93 (157)
T PRK06719 84 NMMVKQAAHD 93 (157)
T ss_pred HHHHHHHHHH
Confidence 4445544443
No 499
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=53.58 E-value=90 Score=27.40 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=42.8
Q ss_pred CcceEEEEcCChhHHH--HHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCCCEEEec
Q 017595 206 QIKQLVDVGGGLGVTL--NIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKGDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~--~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~ 271 (369)
...+||=||||.-..- ..|++...+++++..+. +++.+. ...++++++..++.. ++...++|+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l-~~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDL-KKYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHH-HhCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 4579999999977654 34556555666666666 555443 335678888887765 45445777665
No 500
>PRK00215 LexA repressor; Validated
Probab=53.22 E-value=21 Score=30.66 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=31.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+.|..|||+.+|++ +...+.++|+.|...|+++..
T Consensus 22 ~~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 22 YPPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 478999999999982 457899999999999999874
Done!