Query 017600
Match_columns 369
No_of_seqs 526 out of 3539
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 10:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15094 magnesium/cobalt effl 99.9 9.8E-27 2.1E-31 208.8 14.1 196 139-346 64-273 (292)
2 PRK11573 hypothetical protein; 99.9 3.2E-26 7E-31 215.0 14.3 203 139-351 184-401 (413)
3 TIGR03520 GldE gliding motilit 99.9 2.2E-26 4.9E-31 216.2 11.9 194 139-346 188-399 (408)
4 COG4535 CorC Putative Mg2+ and 99.9 2.3E-24 4.9E-29 177.7 9.6 203 140-354 65-282 (293)
5 COG1253 TlyC Hemolysins and re 99.9 1.4E-23 3.1E-28 199.1 16.1 202 138-351 202-419 (429)
6 COG4536 CorB Putative Mg2+ and 99.9 1.6E-22 3.6E-27 178.0 9.5 203 139-351 197-413 (423)
7 COG2524 Predicted transcriptio 99.8 5.2E-20 1.1E-24 154.2 12.3 123 140-267 170-292 (294)
8 COG2524 Predicted transcriptio 99.8 1.2E-18 2.7E-23 145.9 11.3 123 36-199 167-290 (294)
9 KOG1764 5'-AMP-activated prote 99.8 1E-16 2.2E-21 148.4 20.1 238 2-271 95-364 (381)
10 PRK14869 putative manganese-de 99.7 4.3E-17 9.3E-22 160.4 14.6 217 40-265 67-303 (546)
11 COG3620 Predicted transcriptio 99.7 9.9E-17 2.1E-21 124.6 11.1 122 39-201 63-184 (187)
12 COG3448 CBS-domain-containing 99.7 1.2E-16 2.5E-21 136.6 12.6 132 136-269 239-375 (382)
13 COG3620 Predicted transcriptio 99.7 2.7E-16 5.9E-21 122.2 10.7 120 142-266 65-184 (187)
14 cd04630 CBS_pair_17 The CBS do 99.7 1E-15 2.2E-20 118.8 13.3 110 153-263 2-113 (114)
15 cd04619 CBS_pair_6 The CBS dom 99.7 1.1E-15 2.3E-20 118.8 13.2 109 154-263 3-113 (114)
16 cd04603 CBS_pair_KefB_assoc Th 99.7 1.3E-15 2.7E-20 117.8 12.8 108 153-263 2-110 (111)
17 TIGR01303 IMP_DH_rel_1 IMP deh 99.7 1.4E-15 3E-20 144.6 14.9 148 104-265 55-202 (475)
18 COG3448 CBS-domain-containing 99.7 6.8E-16 1.5E-20 131.9 11.3 130 37-200 241-372 (382)
19 PRK07807 inosine 5-monophospha 99.7 1.5E-15 3.2E-20 144.6 14.7 135 122-265 69-204 (479)
20 cd04641 CBS_pair_28 The CBS do 99.7 2.2E-15 4.9E-20 118.0 13.4 110 153-263 2-119 (120)
21 cd04618 CBS_pair_5 The CBS dom 99.7 2.1E-15 4.6E-20 113.7 11.8 93 153-263 2-97 (98)
22 cd04593 CBS_pair_EriC_assoc_ba 99.6 3.8E-15 8.2E-20 115.8 12.6 110 153-263 2-114 (115)
23 PRK10892 D-arabinose 5-phospha 99.6 2.3E-15 5.1E-20 138.8 13.2 123 140-264 200-323 (326)
24 cd04608 CBS_pair_PALP_assoc Th 99.6 1.4E-15 3E-20 120.0 9.5 112 152-264 2-123 (124)
25 cd04617 CBS_pair_4 The CBS dom 99.6 5E-15 1.1E-19 115.7 12.4 110 153-263 2-117 (118)
26 cd04587 CBS_pair_CAP-ED_DUF294 99.6 7.7E-15 1.7E-19 113.5 13.1 111 153-263 2-112 (113)
27 COG2905 Predicted signal-trans 99.6 9.9E-15 2.1E-19 135.6 15.8 120 141-264 148-268 (610)
28 COG4109 Predicted transcriptio 99.6 5E-15 1.1E-19 129.7 13.0 119 142-267 188-307 (432)
29 cd04623 CBS_pair_10 The CBS do 99.6 8.2E-15 1.8E-19 113.3 12.9 110 153-263 2-112 (113)
30 cd04600 CBS_pair_HPP_assoc Thi 99.6 7.3E-15 1.6E-19 115.7 12.5 111 152-263 2-123 (124)
31 cd04620 CBS_pair_7 The CBS dom 99.6 1.2E-14 2.5E-19 113.0 12.9 110 153-263 2-114 (115)
32 PRK11543 gutQ D-arabinose 5-ph 99.6 5.8E-15 1.3E-19 136.0 13.0 122 141-264 196-318 (321)
33 cd04622 CBS_pair_9 The CBS dom 99.6 1.6E-14 3.5E-19 111.7 13.6 111 153-263 2-112 (113)
34 PRK15094 magnesium/cobalt effl 99.6 1.8E-14 4E-19 129.6 15.8 172 20-235 48-227 (292)
35 cd04607 CBS_pair_NTP_transfera 99.6 1.6E-14 3.4E-19 111.9 13.3 109 153-263 3-112 (113)
36 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 2.7E-14 6E-19 110.0 13.9 109 153-263 2-110 (111)
37 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 1.3E-14 2.9E-19 112.2 12.0 110 153-263 2-113 (114)
38 cd04631 CBS_pair_18 The CBS do 99.6 1.6E-14 3.4E-19 113.9 12.3 110 153-263 2-124 (125)
39 cd04642 CBS_pair_29 The CBS do 99.6 1.8E-14 3.9E-19 113.9 12.6 110 153-263 2-125 (126)
40 cd04615 CBS_pair_2 The CBS dom 99.6 2E-14 4.3E-19 111.2 12.4 109 154-263 3-112 (113)
41 cd04639 CBS_pair_26 The CBS do 99.6 2.1E-14 4.6E-19 110.7 12.6 108 153-263 2-110 (111)
42 cd04605 CBS_pair_MET2_assoc Th 99.6 3.4E-14 7.4E-19 109.3 13.4 107 152-263 2-109 (110)
43 cd04588 CBS_pair_CAP-ED_DUF294 99.6 4.5E-14 9.7E-19 108.7 13.8 108 153-263 2-109 (110)
44 cd04643 CBS_pair_30 The CBS do 99.6 2E-14 4.3E-19 111.7 11.8 108 153-263 2-115 (116)
45 cd04624 CBS_pair_11 The CBS do 99.6 3.9E-14 8.3E-19 109.4 13.3 109 153-263 2-111 (112)
46 cd04627 CBS_pair_14 The CBS do 99.6 3.1E-14 6.7E-19 112.0 12.9 109 153-262 2-121 (123)
47 cd04625 CBS_pair_12 The CBS do 99.6 4E-14 8.6E-19 109.3 13.3 110 153-263 2-111 (112)
48 TIGR00400 mgtE Mg2+ transporte 99.6 6.8E-15 1.5E-19 140.8 10.5 187 18-263 110-303 (449)
49 cd04800 CBS_pair_CAP-ED_DUF294 99.6 4.8E-14 1E-18 108.7 13.4 109 153-263 2-110 (111)
50 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 3.3E-14 7.1E-19 110.1 12.5 110 153-263 3-113 (114)
51 cd04590 CBS_pair_CorC_HlyC_ass 99.6 3.7E-14 8.1E-19 109.3 12.6 107 153-263 2-110 (111)
52 TIGR03520 GldE gliding motilit 99.6 6.9E-14 1.5E-18 131.9 16.8 161 31-236 181-349 (408)
53 cd04596 CBS_pair_DRTGG_assoc T 99.6 3.1E-14 6.7E-19 109.3 12.0 104 153-263 3-107 (108)
54 cd04589 CBS_pair_CAP-ED_DUF294 99.6 4.8E-14 1E-18 108.7 13.1 109 153-263 2-110 (111)
55 cd04621 CBS_pair_8 The CBS dom 99.6 2.9E-14 6.2E-19 114.2 12.2 109 153-263 2-134 (135)
56 cd04802 CBS_pair_3 The CBS dom 99.6 6.7E-14 1.5E-18 108.1 13.7 110 153-263 2-111 (112)
57 cd04803 CBS_pair_15 The CBS do 99.6 3.3E-14 7.1E-19 111.6 12.2 110 153-263 2-121 (122)
58 cd04614 CBS_pair_1 The CBS dom 99.6 2.5E-14 5.3E-19 107.5 10.9 93 153-263 2-95 (96)
59 cd04801 CBS_pair_M50_like This 99.6 2.3E-14 5E-19 111.1 11.1 108 153-263 2-113 (114)
60 cd04626 CBS_pair_13 The CBS do 99.6 3.5E-14 7.6E-19 109.5 12.1 108 153-263 2-110 (111)
61 cd04595 CBS_pair_DHH_polyA_Pol 99.6 6.7E-14 1.5E-18 107.7 13.3 108 152-263 2-109 (110)
62 cd04636 CBS_pair_23 The CBS do 99.6 3.3E-14 7.1E-19 113.4 11.8 109 153-263 2-131 (132)
63 cd04640 CBS_pair_27 The CBS do 99.6 4.5E-14 9.8E-19 111.7 12.2 111 153-263 2-125 (126)
64 PTZ00314 inosine-5'-monophosph 99.6 3.7E-14 7.9E-19 136.2 13.9 136 122-265 75-217 (495)
65 TIGR01302 IMP_dehydrog inosine 99.6 4.3E-14 9.3E-19 134.9 14.0 116 142-265 80-200 (450)
66 cd04629 CBS_pair_16 The CBS do 99.6 3.4E-14 7.3E-19 110.1 11.0 110 153-263 2-113 (114)
67 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 7.3E-14 1.6E-18 106.7 12.6 103 153-263 2-105 (106)
68 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 8.7E-14 1.9E-18 106.8 12.9 106 152-263 2-108 (109)
69 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 9.5E-14 2.1E-18 106.9 13.1 109 153-263 2-110 (111)
70 cd04609 CBS_pair_PALP_assoc2 T 99.5 8.4E-14 1.8E-18 107.0 12.2 108 153-263 2-109 (110)
71 cd04586 CBS_pair_BON_assoc Thi 99.5 4.2E-14 9.2E-19 113.2 10.7 110 152-263 2-134 (135)
72 cd04632 CBS_pair_19 The CBS do 99.5 8E-14 1.7E-18 110.5 12.2 110 153-263 2-127 (128)
73 cd04635 CBS_pair_22 The CBS do 99.5 5.9E-14 1.3E-18 110.1 11.1 111 153-263 2-121 (122)
74 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.5E-13 3.2E-18 107.6 13.2 110 153-263 2-121 (122)
75 PRK01862 putative voltage-gate 99.5 8.4E-14 1.8E-18 137.8 14.1 126 138-266 443-571 (574)
76 cd04610 CBS_pair_ParBc_assoc T 99.5 1.9E-13 4.1E-18 104.6 12.8 105 152-263 2-106 (107)
77 PRK07107 inosine 5-monophospha 99.5 1.4E-13 3E-18 132.0 14.7 107 153-264 106-218 (502)
78 cd04618 CBS_pair_5 The CBS dom 99.5 1.6E-13 3.5E-18 103.4 12.1 91 50-196 2-96 (98)
79 cd04633 CBS_pair_20 The CBS do 99.5 1.3E-13 2.8E-18 108.0 11.8 110 153-263 2-120 (121)
80 cd04599 CBS_pair_GGDEF_assoc2 99.5 2.1E-13 4.5E-18 103.9 12.6 103 153-263 2-104 (105)
81 cd04637 CBS_pair_24 The CBS do 99.5 1.2E-13 2.6E-18 108.4 11.5 110 153-263 2-121 (122)
82 PRK05567 inosine 5'-monophosph 99.5 3.2E-13 6.9E-18 130.3 15.9 172 42-264 88-265 (486)
83 cd04601 CBS_pair_IMPDH This cd 99.5 2.2E-13 4.7E-18 104.7 11.8 106 152-263 2-109 (110)
84 cd04602 CBS_pair_IMPDH_2 This 99.5 3.1E-13 6.8E-18 104.8 12.5 106 152-263 2-113 (114)
85 PLN02274 inosine-5'-monophosph 99.5 2.6E-13 5.7E-18 130.3 14.3 113 147-267 105-223 (505)
86 cd04603 CBS_pair_KefB_assoc Th 99.5 3.2E-13 6.9E-18 104.2 12.0 106 50-196 2-109 (111)
87 cd04606 CBS_pair_Mg_transporte 99.5 2.1E-13 4.5E-18 104.8 10.9 101 157-264 2-108 (109)
88 COG0517 FOG: CBS domain [Gener 99.5 5.7E-13 1.2E-17 103.6 13.5 109 152-262 7-117 (117)
89 PRK05567 inosine 5'-monophosph 99.5 3.6E-13 7.9E-18 130.0 15.0 116 142-265 87-204 (486)
90 PRK07807 inosine 5-monophospha 99.5 1.1E-12 2.5E-17 125.0 17.7 189 9-251 45-251 (479)
91 cd04594 CBS_pair_EriC_assoc_ar 99.5 5E-13 1.1E-17 101.8 12.2 100 155-263 4-103 (104)
92 TIGR00400 mgtE Mg2+ transporte 99.5 3.8E-13 8.2E-18 128.8 13.9 120 139-267 128-253 (449)
93 PRK10892 D-arabinose 5-phospha 99.5 3.1E-13 6.7E-18 124.7 12.7 119 39-196 200-321 (326)
94 cd02205 CBS_pair The CBS domai 99.5 8.5E-13 1.8E-17 101.3 13.1 110 153-263 2-112 (113)
95 cd04619 CBS_pair_6 The CBS dom 99.5 7.2E-13 1.6E-17 102.7 12.2 109 50-196 2-112 (114)
96 cd04584 CBS_pair_ACT_assoc Thi 99.5 6.1E-13 1.3E-17 104.1 11.2 109 153-263 2-120 (121)
97 KOG1764 5'-AMP-activated prote 99.5 3.4E-12 7.4E-17 118.4 17.6 192 49-266 76-286 (381)
98 TIGR00393 kpsF KpsF/GutQ famil 99.5 4.7E-13 1E-17 120.1 11.6 112 142-257 155-268 (268)
99 cd04614 CBS_pair_1 The CBS dom 99.5 1.2E-12 2.5E-17 98.3 11.8 91 50-196 2-94 (96)
100 cd04630 CBS_pair_17 The CBS do 99.5 4.5E-13 9.8E-18 103.8 9.8 94 1-94 19-113 (114)
101 COG2905 Predicted signal-trans 99.5 2E-13 4.3E-18 127.1 9.0 94 1-95 175-268 (610)
102 cd04591 CBS_pair_EriC_assoc_eu 99.5 1E-12 2.3E-17 100.3 11.7 99 152-263 2-104 (105)
103 cd04634 CBS_pair_21 The CBS do 99.5 1.2E-12 2.5E-17 106.0 12.6 109 153-263 2-142 (143)
104 cd04801 CBS_pair_M50_like This 99.5 1.2E-12 2.6E-17 101.4 12.1 109 49-196 1-112 (114)
105 cd04641 CBS_pair_28 The CBS do 99.5 6.9E-13 1.5E-17 103.8 10.5 116 49-196 1-118 (120)
106 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 5.2E-12 1.1E-16 120.4 17.9 114 39-197 86-200 (475)
107 TIGR01137 cysta_beta cystathio 99.4 1.7E-12 3.7E-17 125.3 14.2 123 137-265 330-453 (454)
108 cd04617 CBS_pair_4 The CBS dom 99.4 2.1E-12 4.6E-17 100.8 11.8 110 50-196 2-116 (118)
109 cd04595 CBS_pair_DHH_polyA_Pol 99.4 5.2E-12 1.1E-16 97.1 13.6 107 49-196 2-108 (110)
110 cd04599 CBS_pair_GGDEF_assoc2 99.4 3.9E-12 8.5E-17 96.8 12.7 102 50-196 2-103 (105)
111 PRK11543 gutQ D-arabinose 5-ph 99.4 1.4E-12 2.9E-17 120.3 12.0 117 40-196 196-316 (321)
112 cd04598 CBS_pair_GGDEF_assoc T 99.4 3.1E-12 6.7E-17 99.8 11.9 110 153-263 2-118 (119)
113 cd04638 CBS_pair_25 The CBS do 99.4 7.2E-12 1.6E-16 95.6 12.5 103 153-263 2-105 (106)
114 cd04600 CBS_pair_HPP_assoc Thi 99.4 6.6E-12 1.4E-16 98.7 12.5 119 49-196 2-122 (124)
115 cd04627 CBS_pair_14 The CBS do 99.4 9.1E-12 2E-16 97.9 13.2 116 50-195 2-120 (123)
116 cd04639 CBS_pair_26 The CBS do 99.4 5.4E-12 1.2E-16 97.1 11.5 106 50-196 2-109 (111)
117 cd04625 CBS_pair_12 The CBS do 99.4 1.5E-11 3.2E-16 94.8 14.0 109 50-196 2-110 (112)
118 cd04596 CBS_pair_DRTGG_assoc T 99.4 5.8E-12 1.3E-16 96.5 11.6 103 49-196 2-106 (108)
119 cd04588 CBS_pair_CAP-ED_DUF294 99.4 1.2E-11 2.6E-16 95.0 13.2 107 49-196 1-108 (110)
120 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.1E-11 2.5E-16 94.5 12.9 101 50-196 2-104 (106)
121 cd04800 CBS_pair_CAP-ED_DUF294 99.4 9.3E-12 2E-16 95.8 12.5 109 49-196 1-109 (111)
122 cd04593 CBS_pair_EriC_assoc_ba 99.4 9.7E-12 2.1E-16 96.4 12.5 109 49-196 1-113 (115)
123 cd04621 CBS_pair_8 The CBS dom 99.4 9.7E-12 2.1E-16 99.5 12.9 131 50-196 2-133 (135)
124 cd04623 CBS_pair_10 The CBS do 99.4 3.6E-12 7.8E-17 98.3 10.0 94 1-94 19-112 (113)
125 PRK07107 inosine 5-monophospha 99.4 1.1E-11 2.3E-16 119.1 15.2 115 42-197 95-217 (502)
126 cd04605 CBS_pair_MET2_assoc Th 99.4 1.6E-11 3.4E-16 94.3 13.4 105 49-196 2-108 (110)
127 cd04629 CBS_pair_16 The CBS do 99.4 9.2E-12 2E-16 96.3 12.1 110 50-196 2-112 (114)
128 cd04615 CBS_pair_2 The CBS dom 99.4 1.7E-11 3.8E-16 94.6 13.6 108 50-196 2-111 (113)
129 cd04633 CBS_pair_20 The CBS do 99.4 1.4E-11 3E-16 96.4 13.1 119 49-196 1-119 (121)
130 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 1.4E-11 3E-16 94.7 12.8 107 50-196 2-109 (111)
131 cd04607 CBS_pair_NTP_transfera 99.4 9.4E-12 2E-16 96.2 11.6 107 50-196 3-111 (113)
132 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 2E-11 4.3E-16 93.5 13.3 104 49-196 2-107 (109)
133 cd04626 CBS_pair_13 The CBS do 99.4 1.5E-11 3.2E-16 94.7 12.6 107 50-196 2-109 (111)
134 cd04802 CBS_pair_3 The CBS dom 99.4 1.9E-11 4.1E-16 94.2 13.0 109 50-196 2-110 (112)
135 cd04586 CBS_pair_BON_assoc Thi 99.4 9.7E-12 2.1E-16 99.4 11.7 131 49-196 2-133 (135)
136 cd04594 CBS_pair_EriC_assoc_ar 99.4 2.2E-11 4.7E-16 92.7 13.1 99 52-196 4-102 (104)
137 cd04608 CBS_pair_PALP_assoc Th 99.4 3.8E-12 8.1E-17 100.3 9.1 109 49-196 2-121 (124)
138 cd04589 CBS_pair_CAP-ED_DUF294 99.4 2.5E-11 5.4E-16 93.4 13.4 108 50-196 2-109 (111)
139 cd04585 CBS_pair_ACT_assoc2 Th 99.4 1.7E-11 3.7E-16 95.8 12.5 119 49-196 1-120 (122)
140 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.1E-11 4.6E-16 93.7 12.7 108 49-196 1-109 (111)
141 PRK14869 putative manganese-de 99.3 3.7E-12 8E-17 125.6 10.3 134 127-263 231-390 (546)
142 PRK11573 hypothetical protein; 99.3 4.1E-11 8.8E-16 113.2 16.8 130 34-203 180-314 (413)
143 PRK01862 putative voltage-gate 99.3 8.3E-12 1.8E-16 123.7 12.7 122 38-198 444-569 (574)
144 cd04631 CBS_pair_18 The CBS do 99.3 2E-11 4.4E-16 96.0 12.5 120 49-196 1-123 (125)
145 cd04643 CBS_pair_30 The CBS do 99.3 2E-11 4.3E-16 94.7 12.2 111 50-196 2-114 (116)
146 cd04636 CBS_pair_23 The CBS do 99.3 2E-11 4.4E-16 97.2 12.4 129 49-196 1-130 (132)
147 cd04610 CBS_pair_ParBc_assoc T 99.3 2.6E-11 5.7E-16 92.5 12.4 103 49-196 2-105 (107)
148 cd04624 CBS_pair_11 The CBS do 99.3 2.5E-11 5.5E-16 93.5 12.3 107 50-196 2-110 (112)
149 COG4109 Predicted transcriptio 99.3 1.3E-11 2.7E-16 108.6 11.6 145 7-199 156-305 (432)
150 cd04620 CBS_pair_7 The CBS dom 99.3 1.8E-11 3.8E-16 94.9 11.3 108 50-196 2-113 (115)
151 cd04803 CBS_pair_15 The CBS do 99.3 2.1E-11 4.6E-16 95.5 11.8 117 50-196 2-120 (122)
152 cd04622 CBS_pair_9 The CBS dom 99.3 2.7E-11 5.8E-16 93.5 12.2 110 49-196 1-111 (113)
153 COG0517 FOG: CBS domain [Gener 99.3 4.1E-11 8.9E-16 93.0 13.3 111 45-195 3-116 (117)
154 cd04590 CBS_pair_CorC_HlyC_ass 99.3 2.9E-11 6.3E-16 93.0 12.3 105 50-196 2-109 (111)
155 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.2E-11 4.8E-16 93.9 11.4 109 50-196 2-111 (113)
156 cd04642 CBS_pair_29 The CBS do 99.3 2E-11 4.3E-16 96.4 11.3 121 50-196 2-124 (126)
157 cd04637 CBS_pair_24 The CBS do 99.3 6.3E-11 1.4E-15 92.8 14.1 118 50-196 2-120 (122)
158 PLN02274 inosine-5'-monophosph 99.3 1.2E-10 2.7E-15 112.0 18.6 114 44-199 103-221 (505)
159 PTZ00314 inosine-5'-monophosph 99.3 5.7E-11 1.2E-15 114.3 16.3 114 42-197 97-215 (495)
160 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.4E-11 5.2E-16 93.8 11.3 109 49-196 1-112 (114)
161 cd04640 CBS_pair_27 The CBS do 99.3 2.2E-11 4.7E-16 96.2 10.9 116 50-196 2-124 (126)
162 cd04632 CBS_pair_19 The CBS do 99.3 4.9E-11 1.1E-15 94.3 12.9 121 50-196 2-126 (128)
163 cd04592 CBS_pair_EriC_assoc_eu 99.3 3.3E-11 7.2E-16 96.0 11.5 98 153-250 2-119 (133)
164 cd04634 CBS_pair_21 The CBS do 99.3 6.3E-11 1.4E-15 95.8 13.3 140 49-196 1-141 (143)
165 COG1253 TlyC Hemolysins and re 99.3 1.2E-10 2.7E-15 110.9 17.4 140 19-202 186-330 (429)
166 cd04602 CBS_pair_IMPDH_2 This 99.3 6.1E-11 1.3E-15 91.8 12.7 104 49-196 2-112 (114)
167 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 3.5E-11 7.6E-16 92.9 11.2 108 50-196 3-112 (114)
168 TIGR01302 IMP_dehydrog inosine 99.3 3.5E-11 7.6E-16 115.1 13.4 114 42-198 81-199 (450)
169 cd04635 CBS_pair_22 The CBS do 99.3 4.2E-11 9E-16 93.8 11.6 118 49-196 1-120 (122)
170 cd04584 CBS_pair_ACT_assoc Thi 99.3 8.4E-11 1.8E-15 91.9 12.9 117 50-196 2-119 (121)
171 KOG2550 IMP dehydrogenase/GMP 99.3 1.1E-11 2.4E-16 110.9 7.8 107 152-264 116-226 (503)
172 cd04591 CBS_pair_EriC_assoc_eu 99.3 9E-11 2E-15 89.5 11.8 97 50-196 3-103 (105)
173 cd04601 CBS_pair_IMPDH This cd 99.3 5.7E-11 1.2E-15 91.1 10.8 104 49-196 2-108 (110)
174 TIGR00393 kpsF KpsF/GutQ famil 99.3 3.1E-11 6.8E-16 108.3 10.4 111 41-191 155-268 (268)
175 cd04606 CBS_pair_Mg_transporte 99.2 6.8E-11 1.5E-15 90.7 10.3 98 54-196 2-106 (109)
176 cd04638 CBS_pair_25 The CBS do 99.2 2.1E-10 4.4E-15 87.5 12.6 102 50-196 2-104 (106)
177 TIGR01137 cysta_beta cystathio 99.2 1.2E-10 2.6E-15 112.5 13.0 118 38-196 332-450 (454)
178 COG2239 MgtE Mg/Co/Ni transpor 99.2 9.4E-11 2E-15 110.1 11.7 116 141-265 131-252 (451)
179 cd04609 CBS_pair_PALP_assoc2 T 99.2 2.4E-10 5.2E-15 87.5 12.1 106 50-196 2-108 (110)
180 PF00571 CBS: CBS domain CBS d 99.2 4.9E-11 1.1E-15 80.1 6.4 56 211-266 1-56 (57)
181 cd04598 CBS_pair_GGDEF_assoc T 99.2 5.7E-10 1.2E-14 86.9 13.1 111 50-196 2-117 (119)
182 cd02205 CBS_pair The CBS domai 99.2 9.1E-10 2E-14 84.2 12.9 108 50-196 2-111 (113)
183 COG4536 CorB Putative Mg2+ and 99.1 5.9E-10 1.3E-14 99.3 12.2 132 33-204 192-328 (423)
184 TIGR01186 proV glycine betaine 99.0 1.1E-08 2.4E-13 94.9 17.0 107 154-267 252-359 (363)
185 COG2239 MgtE Mg/Co/Ni transpor 99.0 2.3E-09 5E-14 100.9 10.6 120 32-196 123-249 (451)
186 cd04592 CBS_pair_EriC_assoc_eu 99.0 4.6E-09 1E-13 83.6 10.4 114 50-182 2-116 (133)
187 PF00571 CBS: CBS domain CBS d 99.0 1.5E-09 3.3E-14 72.7 6.5 54 43-96 1-55 (57)
188 PRK10070 glycine betaine trans 98.9 4.2E-08 9.1E-13 92.2 16.9 104 157-267 290-394 (400)
189 COG4535 CorC Putative Mg2+ and 98.8 1.2E-08 2.6E-13 85.3 7.9 127 34-202 60-191 (293)
190 KOG0474 Cl- channel CLC-7 and 98.8 1.1E-08 2.3E-13 96.8 8.0 125 138-265 578-746 (762)
191 KOG0474 Cl- channel CLC-7 and 98.6 7.3E-08 1.6E-12 91.2 6.9 156 39-196 580-743 (762)
192 PRK10070 glycine betaine trans 98.6 2.5E-06 5.3E-11 80.4 16.8 150 6-201 232-394 (400)
193 TIGR01186 proV glycine betaine 98.6 3.1E-06 6.7E-11 78.7 16.3 148 6-200 197-357 (363)
194 COG4175 ProV ABC-type proline/ 98.4 4.3E-06 9.3E-11 73.9 11.1 165 48-267 215-384 (386)
195 cd04597 CBS_pair_DRTGG_assoc2 98.3 9E-07 1.9E-11 68.3 5.8 55 209-263 58-112 (113)
196 KOG2550 IMP dehydrogenase/GMP 98.3 1.6E-06 3.5E-11 78.4 7.1 104 49-196 116-224 (503)
197 cd04597 CBS_pair_DRTGG_assoc2 98.2 3.5E-06 7.5E-11 65.0 5.6 53 41-93 58-111 (113)
198 smart00116 CBS Domain in cysta 98.1 1.4E-05 3E-10 50.6 6.1 47 218-264 1-47 (49)
199 KOG0475 Cl- channel CLC-3 and 97.9 0.00011 2.4E-09 70.4 11.9 111 153-264 557-693 (696)
200 TIGR03415 ABC_choXWV_ATP choli 97.7 0.00053 1.1E-08 64.3 12.7 83 173-266 298-380 (382)
201 KOG0475 Cl- channel CLC-3 and 97.7 0.00021 4.6E-09 68.5 8.6 130 51-196 558-691 (696)
202 smart00116 CBS Domain in cysta 97.6 0.00021 4.6E-09 44.8 5.8 46 50-95 1-47 (49)
203 TIGR03415 ABC_choXWV_ATP choli 97.3 0.0041 8.9E-08 58.4 12.4 139 6-198 232-378 (382)
204 KOG2118 Predicted membrane pro 97.3 0.00042 9E-09 67.0 5.5 134 139-276 201-338 (498)
205 KOG0476 Cl- channel CLC-2 and 97.2 0.0029 6.4E-08 62.1 10.7 60 40-99 587-649 (931)
206 PF03471 CorC_HlyC: Transporte 96.9 0.00059 1.3E-08 49.0 2.0 54 289-350 20-76 (81)
207 COG1125 OpuBA ABC-type proline 96.3 0.033 7E-07 48.5 8.8 97 162-263 195-307 (309)
208 cd06409 PB1_MUG70 The MUG70 pr 95.5 0.016 3.5E-07 41.6 3.3 32 335-366 1-33 (86)
209 COG4175 ProV ABC-type proline/ 95.5 0.084 1.8E-06 47.4 8.3 135 9-200 235-382 (386)
210 COG1125 OpuBA ABC-type proline 91.2 1.2 2.7E-05 39.0 7.9 87 7-94 204-307 (309)
211 KOG0476 Cl- channel CLC-2 and 88.6 0.72 1.6E-05 46.1 4.9 66 208-273 587-654 (931)
212 KOG2118 Predicted membrane pro 72.0 3.3 7.2E-05 40.5 2.9 125 36-200 199-328 (498)
213 PRK11388 DNA-binding transcrip 59.3 28 0.0006 35.5 6.9 91 163-258 61-163 (638)
214 PF05198 IF3_N: Translation in 56.5 34 0.00074 24.0 4.9 34 5-38 11-44 (76)
215 COG1419 FlhF Flagellar GTP-bin 55.0 44 0.00096 31.6 6.8 143 17-186 234-377 (407)
216 PF05198 IF3_N: Translation in 54.6 28 0.0006 24.4 4.2 25 240-264 12-36 (76)
217 PRK11388 DNA-binding transcrip 46.2 37 0.00081 34.5 5.4 80 7-89 73-163 (638)
218 PF14044 NETI: NETI protein 42.5 31 0.00068 22.5 2.6 23 221-245 3-25 (57)
219 CHL00199 infC translation init 41.8 37 0.00081 28.2 3.7 34 5-38 23-56 (182)
220 PF14827 Cache_3: Sensory doma 38.3 33 0.00071 26.0 2.8 17 242-258 93-109 (116)
221 TIGR00168 infC translation ini 35.7 47 0.001 27.2 3.4 34 5-38 6-39 (165)
222 cd02958 UAS UAS family; UAS is 33.5 1.3E+02 0.0028 22.5 5.4 96 161-266 4-108 (114)
223 PF03948 Ribosomal_L9_C: Ribos 32.6 37 0.0008 24.4 2.1 26 14-39 24-50 (87)
224 COG2216 KdpB High-affinity K+ 32.3 77 0.0017 31.1 4.6 36 162-197 414-449 (681)
225 COG2216 KdpB High-affinity K+ 29.4 1.3E+02 0.0027 29.7 5.5 39 60-98 415-453 (681)
226 COG1956 GAF domain-containing 27.9 60 0.0013 26.4 2.7 18 74-91 118-135 (163)
227 smart00594 UAS UAS domain. 26.7 1.4E+02 0.003 22.8 4.6 94 160-263 13-119 (122)
228 COG0290 InfC Translation initi 24.1 2.2E+02 0.0047 23.5 5.2 25 5-29 17-41 (176)
229 PRK00028 infC translation init 24.0 1.4E+02 0.0031 24.8 4.3 34 5-38 18-51 (177)
230 PF02743 Cache_1: Cache domain 23.1 90 0.0019 21.6 2.7 16 8-23 18-33 (81)
231 PF13365 Trypsin_2: Trypsin-li 22.6 58 0.0013 24.2 1.7 19 237-255 102-120 (120)
232 COG0359 RplI Ribosomal protein 22.3 90 0.002 25.0 2.8 26 14-39 85-110 (148)
233 PRK10026 arsenate reductase; P 22.1 4.1E+02 0.0089 21.1 7.9 93 154-255 6-107 (141)
234 PF04459 DUF512: Protein of un 21.6 3.8E+02 0.0082 22.9 6.6 60 175-235 127-192 (204)
235 PRK00028 infC translation init 21.6 78 0.0017 26.3 2.4 26 240-265 19-44 (177)
236 TIGR03278 methan_mark_10 putat 21.3 4.5E+02 0.0098 25.1 7.7 70 183-264 312-387 (404)
237 TIGR00168 infC translation ini 20.3 77 0.0017 26.0 2.1 26 240-265 7-32 (165)
238 PF11141 DUF2914: Protein of u 20.1 60 0.0013 22.0 1.2 19 334-356 45-63 (66)
239 TIGR00158 L9 ribosomal protein 20.1 1.3E+02 0.0028 24.1 3.3 26 13-38 84-109 (148)
240 COG0290 InfC Translation initi 20.1 1.4E+02 0.003 24.6 3.4 26 239-264 17-42 (176)
No 1
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.94 E-value=9.8e-27 Score=208.81 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=162.7
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017600 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
+...+++++|+|+.++++++++.++.++++.+.+++++++||++ + ++++|+++.+|++ ........ ...+.++|.
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~r 140 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVLR 140 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHcC
Confidence 56778999999988999999999999999999999999999998 4 7899999999997 44332211 235788884
Q ss_pred cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchH-HH-----------HHHH
Q 017600 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE-AA-----------STMM 284 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~-~~-----------~~~~ 284 (369)
+++++++++++.++++.|++++.+.+||+|++|.++|+||++||+++++|++.++.+...+ .. ..+.
T Consensus 141 -~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 219 (292)
T PRK15094 141 -QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS 219 (292)
T ss_pred -CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence 6679999999999999999999999999999999999999999999999999887763321 01 1112
Q ss_pred HHHHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCCce
Q 017600 285 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 346 (369)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~ 346 (369)
-+..++.+....++++|+|++|++...++++|+.|+.+.+.++. |+|.+++|+-
T Consensus 220 l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~--------f~V~~~~~~r 273 (292)
T PRK15094 220 IEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ--------FKVAMADSRR 273 (292)
T ss_pred HHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence 22234445555566689999999999999999999999999999 9999997654
No 2
>PRK11573 hypothetical protein; Provisional
Probab=99.94 E-value=3.2e-26 Score=214.99 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=165.7
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017600 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
+...+++++|+|+.++.+++.++++.++++.+.+++++++||++ .++++|+++.+|++ .....+.......+.+++
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~~~~~l~~~~- 261 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKENMLRAA- 261 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcCCHHHHHhhc-
Confidence 56788999999999999999999999999999999999999998 48999999999998 443322211122344565
Q ss_pred cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCch-HHH-----------HHHH
Q 017600 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-EAA-----------STMM 284 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~-~~~-----------~~~~ 284 (369)
+++.+|++++++.++++.|++++.|.+.|+||+|...|+||.+||+++++|++.++.+... ... +.+.
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 341 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN 341 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeE
Confidence 6899999999999999999999999999999999999999999999999999998876421 101 1122
Q ss_pred HHHHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCC-ceEEeec
Q 017600 285 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC 351 (369)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~ 351 (369)
-+..+..+.+..++++|+|++|++...+|++|+.|+.+.+.++. |+|.+++| ++.|.++
T Consensus 342 l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~--------f~V~~~~~~rI~~v~v 401 (413)
T PRK11573 342 VREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD--------IDILDVQDNMIKQVKV 401 (413)
T ss_pred HHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEecCCeEEEEEE
Confidence 23335555556666689999999999999999999999999999 99999964 5554444
No 3
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.94 E-value=2.2e-26 Score=216.20 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=160.7
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017600 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
+...+++++|+|+.++++++.++++.++++.+.+++++++||++ .++++|+++.+|++ ..... ...++.++|
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~- 261 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLL- 261 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHc-
Confidence 45788999999999999999999999999999999999999998 36899999999998 44332 134577888
Q ss_pred cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchHHH-----------HHHHH
Q 017600 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-----------STMMQ 285 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~~~-----------~~~~~ 285 (369)
+++.++++++++.++++.|++++.+.++|+||+|.++|+||.+||+++++|++.++.+...+.. ..+.-
T Consensus 262 ~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l 341 (408)
T TIGR03520 262 REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSL 341 (408)
T ss_pred CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCH
Confidence 5789999999999999999999999999999999999999999999999999988765332211 11222
Q ss_pred HHHHHhhcCCC---C--CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCCCce
Q 017600 286 KFWDSAMALSP---N--DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 346 (369)
Q Consensus 286 ~~~~~~~~~~~---~--~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~ 346 (369)
+..++.+..+. + +++++|++|++...++++|+.||.+.+.++. |+|.+++++-
T Consensus 342 ~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~~--------f~V~~~~~~r 399 (408)
T TIGR03520 342 KDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFE--------FTIEAMDKKR 399 (408)
T ss_pred HHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence 22344444442 1 3468999999999999999999999999999 9999997553
No 4
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.3e-24 Score=177.67 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=171.3
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccccc
Q 017600 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (369)
Q Consensus 140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~ 217 (369)
...+++++|.||....++..+.++.+++..+.+..++++||+. .+.+.||+..+|++ +++..... ...+.++. +
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL-R 140 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL-R 140 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-c
Confidence 3456999999999999999999999999999999999999997 67899999999998 66554432 34677766 8
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchHHH-HHHHHH----------
Q 017600 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-STMMQK---------- 286 (369)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~~~-~~~~~~---------- 286 (369)
|.++||++..+...++-|+.++.|++.|+||+|.+.|+||.+||++.++|.+.++.+..++.- ..+...
T Consensus 141 Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~I 220 (293)
T COG4535 141 PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEI 220 (293)
T ss_pred cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccH
Confidence 999999999999999999999999999999999999999999999999999999988765421 111111
Q ss_pred -HHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeecCCC
Q 017600 287 -FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTCGML 354 (369)
Q Consensus 287 -~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~g~~ 354 (369)
.++..++-...+++++|.+|+++...|+.|..|+.+...++. |+|...| +++|...+-+.
T Consensus 221 edFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~--------FkV~~ADsRrv~~l~vt~~ 282 (293)
T COG4535 221 EDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ--------FKVARADSRRVIQLHVTVP 282 (293)
T ss_pred HHHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE--------EEEeecccceEEEEEEecC
Confidence 235555556677889999999999999999999999999999 9998874 77776655443
No 5
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=199.06 Aligned_cols=202 Identities=15% Similarity=0.174 Sum_probs=164.6
Q ss_pred HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017600 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m 215 (369)
.+..++++++|+||.++.+++.+.+++++.+.+.+++++++||++ .++++|+++.+|++........ .......+
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~ 278 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV 278 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc
Confidence 356789999999999999999999999999999999999999998 6889999999999954443321 01111222
Q ss_pred ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCch--HH----------HHHH
Q 017600 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN--EA----------ASTM 283 (369)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~--~~----------~~~~ 283 (369)
++++++++++++.++++.|++++.|.+.|+||+|.+.|+||.+||+++++|++.++++... .. ...+
T Consensus 279 -~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~ 357 (429)
T COG1253 279 -RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV 357 (429)
T ss_pred -cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence 4899999999999999999999999999999999999999999999999999998887532 11 1222
Q ss_pred HHHHHHHhhcCC-CCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcCC-CceEEeec
Q 017600 284 MQKFWDSAMALS-PNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTC 351 (369)
Q Consensus 284 ~~~~~~~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~ 351 (369)
.-+..++.+... +++++|+|++|++...++++|..|+.+.++++. |+|.+++ .++.|.++
T Consensus 358 ~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~rI~~v~i 419 (429)
T COG1253 358 PLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGRRIDKVLI 419 (429)
T ss_pred cHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCCcEEEEEE
Confidence 223335555555 334478999999999999999999999999999 9999996 45655544
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=177.96 Aligned_cols=203 Identities=14% Similarity=0.156 Sum_probs=170.5
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017600 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
+.+.+|+|+|.||.++..++.+++.+++++.+....+.++|++. -++++|+++.+|++ +++.+........+..+.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a- 274 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA- 274 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-
Confidence 34678999999999999999999999999999999999999997 46799999999998 666554433233333333
Q ss_pred cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCchHHHHH-----------HHH
Q 017600 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAAST-----------MMQ 285 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~-----------~~~ 285 (369)
.+|+++|+++++.+-+..|++++-|...||||+|.+.|+||.+||+++++|++.++++...+.... ..-
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~i 354 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANV 354 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcH
Confidence 689999999999999999999999999999999999999999999999999998877766542222 233
Q ss_pred HHHHHhhcCCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEEEcC-CCceEEeec
Q 017600 286 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN-KGLMHRFTC 351 (369)
Q Consensus 286 ~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 351 (369)
...++.+.+..|+++..|..|++.+.++++|+.|..+..-++. |+|.+. ++++.+-++
T Consensus 355 RdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~~~~~i~~~~--------~~Il~~~~N~I~~vri 413 (423)
T COG4536 355 RDLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRIGGYR--------IDILKVQENRIKQVKI 413 (423)
T ss_pred HHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCCeEEEEcCEE--------EEEEehhhcceeeEEE
Confidence 3458889999999999999999999999999999999999998 998887 455654443
No 7
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.83 E-value=5.2e-20 Score=154.17 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=113.2
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017600 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
.+.++.++|+ ++++++.+++|+.++.+.|.++++++.||+|+++++|++|..|+. ..++++. ...+|+++|.+++
T Consensus 170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~--~~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGN--LDAKVSDYMRKNV 244 (294)
T ss_pred Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCC--ccccHHHHhccCC
Confidence 4567889998 789999999999999999999999999999988999999999997 6666653 2689999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
+++.+++.+.||+++|..+++.+|.|+|.+|+++|+||++||++.+.+
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987653
No 8
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.78 E-value=1.2e-18 Score=145.95 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=110.2
Q ss_pred CCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017600 36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (369)
Q Consensus 36 ~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
..+.+.+|.++|+++++++++++|+.+|.++|.++++++.||+|+++++|+++..|+..++...
T Consensus 167 ~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g---------------- 230 (294)
T COG2524 167 VSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG---------------- 230 (294)
T ss_pred eecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC----------------
Confidence 3566889999999999999999999999999999999999999988999999999987763311
Q ss_pred hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017600 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (369)
Q Consensus 116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d 194 (369)
-...+|+++|. +++++++.++.+.||+++|..+++.++.|+| +|+++|+||+.|
T Consensus 231 -----------------------~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTD 285 (294)
T COG2524 231 -----------------------NLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTD 285 (294)
T ss_pred -----------------------CccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence 22356889998 7899999999999999999999999999999 999999999999
Q ss_pred HHHHH
Q 017600 195 ILMRV 199 (369)
Q Consensus 195 ll~~~ 199 (369)
++.++
T Consensus 286 IL~~i 290 (294)
T COG2524 286 ILTRI 290 (294)
T ss_pred HHHHh
Confidence 98444
No 9
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.75 E-value=1e-16 Score=148.42 Aligned_cols=238 Identities=20% Similarity=0.226 Sum_probs=173.1
Q ss_pred ccCCcCEEEEEcCC-CcEEEEEeHHHHHHHHHhccCC------Ccc---------cccccc----cccCCeEEeCCCcHH
Q 017600 2 AARRVDALLLTDSN-ALLCGILTDKDIATRVIARELN------LEE---------TPVSKV----MTRNPTFVLSDTLAV 61 (369)
Q Consensus 2 ~~~~~~~~~V~d~~-~~~~Givt~~Di~~~~~~~~~~------~~~---------~~v~di----m~~~~i~v~~~~~l~ 61 (369)
..+..++.|++|.. .++.|++|..|+...+...... ... .++..+ -.++++++.+..++.
T Consensus 95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l 174 (381)
T KOG1764|consen 95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL 174 (381)
T ss_pred HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence 35678899999944 5799999999998554432111 000 111111 123338899999999
Q ss_pred HHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHh
Q 017600 62 EALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM 139 (369)
Q Consensus 62 ~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 139 (369)
++...+.+++++++||.| .++++.+++.+.+++.+........ ...+
T Consensus 175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-------------------------------~~~~ 223 (381)
T KOG1764|consen 175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-------------------------------LPSL 223 (381)
T ss_pred HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-------------------------------cHHH
Confidence 999999999999999998 4899999999999987543322110 0011
Q ss_pred CCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc-CCCccccc-ccccc
Q 017600 140 FRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTL-VEKVM 215 (369)
Q Consensus 140 ~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~-v~~~m 215 (369)
...++.+.-... .++..+..++++.+|++.|.+.+++.+||++ .|+.+|.++..|+. ..... ........ +....
T Consensus 224 l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~-~l~~~~~~~~~~~~~l~~~~ 302 (381)
T KOG1764|consen 224 LSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI-HLAREGTYNNLDLSCLSEAL 302 (381)
T ss_pred hhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh-hhhhcCccCccchhHHHHHh
Confidence 122222222211 3588999999999999999999999999999 77779999999996 44433 22222222 22222
Q ss_pred ------ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcC
Q 017600 216 ------TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN 271 (369)
Q Consensus 216 ------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~ 271 (369)
..+++++.++.++.++++.|..+++|+++|||++|.++|+||..|++.+++..-..
T Consensus 303 ~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~~ 364 (381)
T KOG1764|consen 303 SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPSG 364 (381)
T ss_pred hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCccC
Confidence 13569999999999999999999999999999999999999999999988765543
No 10
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.73 E-value=4.3e-17 Score=160.40 Aligned_cols=217 Identities=20% Similarity=0.229 Sum_probs=151.8
Q ss_pred ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017600 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
..+++++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+........... ........+..+.
T Consensus 67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence 3689999999999999999999999999999999999999 699999999999988766433210 0111122222333
Q ss_pred HhcCCCCCChhhHHHH-HHH----HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCC---------
Q 017600 119 KHWGTSISGPNTFIET-LRE----RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------- 184 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~-~~~----~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~--------- 184 (369)
+.++..+......... ... .+....+.+.|.+ .+++++..+..+. ..+.+.+.++++|+.+.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~~---~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDIQ---LAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHHH---HHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 3333222211100000 000 0000112233443 3466666555443 35688899999888632
Q ss_pred ----EEEEEeehHHHHHHHHhcCCCccccccccccc-cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHH
Q 017600 185 ----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 259 (369)
Q Consensus 185 ----~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~ 259 (369)
.+.++.|..|.+ .....-. ...+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||..
T Consensus 221 a~~~~i~ii~t~~dt~-~t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 221 AKENGVTVISTPYDTF-TTARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY 297 (546)
T ss_pred HHhCCCeEEEecccHH-HHHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence 378899999987 4333222 2678999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 017600 260 HITHAA 265 (369)
Q Consensus 260 di~~~~ 265 (369)
|+++..
T Consensus 298 dl~~~~ 303 (546)
T PRK14869 298 HLLSPV 303 (546)
T ss_pred Hhhccc
Confidence 999753
No 11
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.71 E-value=9.9e-17 Score=124.64 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=104.0
Q ss_pred cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017600 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
...+++.+|+++++++.|++++.+++++|.+++++.+||+++++++|-++..++.+..++.++
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e----------------- 125 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGME----------------- 125 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhcccc-----------------
Confidence 467889999999999999999999999999999999999999999999999999877543321
Q ss_pred HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017600 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~ 198 (369)
.....+++++|. ..+++++++.++.....++..+ .++.|+++|+++||||..|++ +
T Consensus 126 -------------------~i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k 181 (187)
T COG3620 126 -------------------SIRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K 181 (187)
T ss_pred -------------------chhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence 133456888998 6799999999998888777654 568888999999999999998 6
Q ss_pred HHh
Q 017600 199 VIS 201 (369)
Q Consensus 199 ~~~ 201 (369)
+++
T Consensus 182 ~~~ 184 (187)
T COG3620 182 LLA 184 (187)
T ss_pred HHh
Confidence 554
No 12
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.2e-16 Score=136.60 Aligned_cols=132 Identities=26% Similarity=0.305 Sum_probs=114.2
Q ss_pred HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH----hcCCCccccc
Q 017600 136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI----SQNLPADSTL 210 (369)
Q Consensus 136 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~----~~~~~~~~~~ 210 (369)
...+...+..++|+ ++++++++++++.+|.++|.+++++.+||+| +.+++|++|.+|++..+- +.-.......
T Consensus 239 ~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~ 316 (382)
T COG3448 239 RRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT 316 (382)
T ss_pred HHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence 33566677899999 7999999999999999999999999999999 889999999999984211 1111123567
Q ss_pred cccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHh
Q 017600 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV 269 (369)
Q Consensus 211 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~ 269 (369)
++.+|+.++.++.++++..+++..+.+.+.|++||+|++|+++||||..|++.++..+.
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876543
No 13
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.69 E-value=2.7e-16 Score=122.21 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=105.4
Q ss_pred CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCce
Q 017600 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~ 221 (369)
.+...+|+ .+++.+++++++.+++++|.+++++.+||+++++++|-||.+++.+..+....+.....+.++|..+.++
T Consensus 65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~ 142 (187)
T COG3620 65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT 142 (187)
T ss_pred EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence 45688998 7899999999999999999999999999999999999999999985555554555678899999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017600 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~ 266 (369)
|+++.++..+..++..++ .+.|+ ++|+++||||..||++.+-
T Consensus 143 Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 143 VSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 999999999999888765 46677 6899999999999998543
No 14
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=1e-15 Score=118.80 Aligned_cols=110 Identities=28% Similarity=0.343 Sum_probs=96.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.+++++.++.++++.|.+++++.+||++ + ++++|+++.+|+++.+..........++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 578899999999999999999999999998 6 89999999999974454433333346789999888999999999999
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999997 99999999999985
No 15
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=1.1e-15 Score=118.79 Aligned_cols=109 Identities=24% Similarity=0.308 Sum_probs=96.7
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc-CCCccccccccccccCCceecCCCCHHHH
Q 017600 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+.++++++++.++++.|.+.+...+||++ +|+++|+++.+|++ +.... .......++.++|.+++.++++++++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence 77899999999999999999999999998 88999999999997 44432 12223567899999999999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++...+||+|++|+++|+||..|+++
T Consensus 82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999998899999999999875
No 16
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1.3e-15 Score=117.78 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=95.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..|+. +.... .....++.++|..++.++++++++.+|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence 477899999999999999999999999998 78999999999996 43211 112357899998889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++|.+++.+++||+|++|+++|+||..|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999985
No 17
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.66 E-value=1.4e-15 Score=144.63 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=123.8
Q ss_pred HhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC
Q 017600 104 AEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE 183 (369)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~ 183 (369)
++..+++..+..+ |.++++.+...+...+.....++.++|. .+++++++++++.++++.|.+++++.+||+++
T Consensus 55 Te~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~ 127 (475)
T TIGR01303 55 AGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE 127 (475)
T ss_pred HHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC
Confidence 3344444444444 7777777755666666666777888988 67899999999999999999999999999998
Q ss_pred CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 184 NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 184 ~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++|++|.+|+. .. .. ..++.++|+++++++++++++.+|+++|.+++.+++||+|++|+++|+||..||++
T Consensus 128 gklvGIVT~rDL~-~~-----~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 128 DRPVGLVTDSDLL-GV-----DR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred CEEEEEEEHHHhh-cC-----CC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 8999999999984 21 11 35799999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 017600 264 AA 265 (369)
Q Consensus 264 ~~ 265 (369)
+.
T Consensus 201 ~~ 202 (475)
T TIGR01303 201 AT 202 (475)
T ss_pred HH
Confidence 54
No 18
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.66 E-value=6.8e-16 Score=131.94 Aligned_cols=130 Identities=20% Similarity=0.322 Sum_probs=112.1
Q ss_pred CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017600 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (369)
Q Consensus 37 ~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
...+.++.|||+++++++.+++++.+|.++|.+++++.+||+| +.+++|+++.+|+++..-
T Consensus 241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~------------------ 302 (382)
T COG3448 241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR------------------ 302 (382)
T ss_pred HhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC------------------
Confidence 3456789999999999999999999999999999999999999 689999999999986411
Q ss_pred hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHH
Q 017600 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (369)
Q Consensus 116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~d 194 (369)
..+.+.++ .+...+++.+|+ +.+.++.++++..+++-.+.+.+.+++||+| .|+++||+|..|
T Consensus 303 -------------~~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtD 366 (382)
T COG3448 303 -------------PSPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTD 366 (382)
T ss_pred -------------cchHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHH
Confidence 12233333 456788999999 6799999999999999999999999999999 999999999999
Q ss_pred HHHHHH
Q 017600 195 ILMRVI 200 (369)
Q Consensus 195 ll~~~~ 200 (369)
++..+.
T Consensus 367 liaal~ 372 (382)
T COG3448 367 LIAALY 372 (382)
T ss_pred HHHHHH
Confidence 984443
No 19
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.66 E-value=1.5e-15 Score=144.61 Aligned_cols=135 Identities=25% Similarity=0.276 Sum_probs=117.4
Q ss_pred CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017600 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (369)
Q Consensus 122 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~ 200 (369)
|.++.+.+-..+...+.+...++.++|. .+++++++++++.++++.|.+++++++||++ +++++|++|.+|+. ..
T Consensus 69 GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~- 144 (479)
T PRK07807 69 GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV- 144 (479)
T ss_pred CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence 5566665555556666667777889998 6899999999999999999999999999998 88999999999994 21
Q ss_pred hcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 201 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
.. ..++.++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++..
T Consensus 145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT 204 (479)
T ss_pred ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 11 3579999999999999999999999999999999999999999999999999999864
No 20
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.2e-15 Score=118.04 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=91.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC-ccccccc------cccccCCceecC
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI 224 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~-~~~~~v~------~~m~~~~~~v~~ 224 (369)
++.++++++++.++++.|.+++.+++||++ +|+++|+++.+|++ .+...+.. ....++. +.|..++.++++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 478899999999999999999999999998 88999999999997 54433221 1111222 334456789999
Q ss_pred CCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 225 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
No 21
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=2.1e-15 Score=113.70 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=84.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.++++++++.++.+.|.+++++++||++ + ++++|++|.+|+. +... +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence 478999999999999999999999999998 4 7999999999996 3211 778999999999
Q ss_pred HHHHHHhCCCceeeEEcCC-CcEEEEEeHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~-g~~~Givt~~di~~ 263 (369)
|++.|.+++.+++||+|++ |+++|+||.+|++.
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999987 99999999999975
No 22
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.64 E-value=3.8e-15 Score=115.75 Aligned_cols=110 Identities=27% Similarity=0.397 Sum_probs=96.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++++++++.++.+.|.+.+.+.+||++ +++++|+++.+|++ ............++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 467889999999999999999999999999 79999999999997 4443333222445888998899999999999999
Q ss_pred HHHHHhCCCceeeEEcCC--CcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~--g~~~Givt~~di~~ 263 (369)
++.|.+++...+||+|++ |+++|+||..|+++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999987 89999999999986
No 23
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.64 E-value=2.3e-15 Score=138.81 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=106.9
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccC
Q 017600 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (369)
Q Consensus 140 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~ 218 (369)
...+++++|.+.++++++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+. +....+......++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 4456899998433899999999999999999998888888888 89999999999996 555444333356899999999
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
+.++.+++++.+|++.|.+++.+++||+| +|+++|+||..|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 99999999999999999999999999997 6899999999999974
No 24
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.63 E-value=1.4e-15 Score=120.02 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=96.2
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
+++.+++++.++.++++.|.+++.+++||++ +++++|+++.+|++...... ......+++++|.+++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG-KVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh-ccCCCCcHHHHhhccceecCCCCCHHH
Confidence 3588899999999999999999999999998 78999999999998444433 323367999999999999999999999
Q ss_pred HHHHHH---------hCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 231 a~~~~~---------~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
+.+++. +.+.+++||+|++|+++|+||..|++++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 999653 3367888999988999999999999975
No 25
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.63 E-value=5e-15 Score=115.73 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCceecCCCCHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 229 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 229 (369)
++.+++++.++.++++.|.+++.+++||++ +++++|++|..|+.+... ........++.++|.+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 467899999999999999999999999998 689999999999974433 3332335568889974 688999999999
Q ss_pred HHHHHHHhCCCceeeEEcCC---CcEEEEEeHHHHHH
Q 017600 230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH 263 (369)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~---g~~~Givt~~di~~ 263 (369)
+++++|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999987 69999999999874
No 26
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.63 E-value=7.7e-15 Score=113.52 Aligned_cols=111 Identities=58% Similarity=0.840 Sum_probs=96.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++.++.++.++++.|.+++.+.+||+++++++|+++.+|++......+......++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 46788999999999999998899999999889999999999997555443322222578899988899999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++.+++||+|++|+++|+||..|++.
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999999998899999999999975
No 27
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.63 E-value=9.9e-15 Score=135.64 Aligned_cols=120 Identities=27% Similarity=0.356 Sum_probs=109.9
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017600 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
.+++.++++ .++++|++.+++.+|...|.+.|.+++.+++ ++...||+|.+|+..+.+.++.+. +.+|+++|+.|+
T Consensus 148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~ 224 (610)
T COG2905 148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV 224 (610)
T ss_pred HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence 345677777 6799999999999999999999999888888 899999999999987888777665 789999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
+++..++.+.+|+-.|.+++++++||.+ +|+++|+||..||++.
T Consensus 225 ~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l 268 (610)
T COG2905 225 ISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL 268 (610)
T ss_pred eeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence 9999999999999999999999999996 7999999999999985
No 28
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.62 E-value=5e-15 Score=129.70 Aligned_cols=119 Identities=24% Similarity=0.247 Sum_probs=110.2
Q ss_pred CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCc
Q 017600 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~ 220 (369)
..|.++|+|..+...+.+++++++..++..+.+++++||+| ..+++|++|.+|+. ... .+.++..+|+++|+
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~-~~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKK-PSTTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCC-CCccHHHHhccCCe
Confidence 35789999988999999999999999999999999999999 89999999999997 222 26899999999999
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
++.+.+++..+.+.|...++..+||+|++.+++|+||+.|+++++-.
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997643
No 29
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=8.2e-15 Score=113.25 Aligned_cols=110 Identities=33% Similarity=0.479 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+++++||++ +++++|+++.+|+++.+..........++.++|.+++.++++++++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 467889999999999999999999999998 6899999999999743433222222457889998889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999987 99999999999975
No 30
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=7.3e-15 Score=115.67 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=97.2
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC----------ccccccccccccCCc
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE 220 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~ 220 (369)
+++.+++++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ ........ ....++.++|.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 4688899999999999999999999999998 69999999999997 44332211 124478899988999
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999999999999986
No 31
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.2e-14 Score=112.98 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=94.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCC--CCHH
Q 017600 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 229 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~-~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~--~~l~ 229 (369)
++.+++++.++.++++.|.+.+ ...+||+++++++|+++..|++ +...........++.++|.+++.+++++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 3667899999999999998888 6778888888999999999997 5544333322467889998888889887 7899
Q ss_pred HHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++.|.+++...+||+|++|+++|+||..|+++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999986
No 32
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.61 E-value=5.8e-15 Score=135.98 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=106.4
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017600 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
..+|+++|.+..+++++++++++.++.+.|.+.+.+.+||++ +|+++|+++.+|+. +.+...... ..++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence 356899998422399999999999999999988999999999 88999999999996 544433222 457999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
.++.+++++.+|++.|.+++...+||+|++|+++|+||..|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999974
No 33
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.6e-14 Score=111.69 Aligned_cols=111 Identities=32% Similarity=0.478 Sum_probs=97.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++.+.|.+.+++++||+++|+++|+++..|++.+...........++.++|...+.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 47789999999999999999999999999989999999999986444444333323358999988999999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+.+.+++||+|++|+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999998899999999999975
No 34
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.61 E-value=1.8e-14 Score=129.55 Aligned_cols=172 Identities=13% Similarity=0.149 Sum_probs=125.2
Q ss_pred EEEeHHHHHHHHHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHH
Q 017600 20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYD 95 (369)
Q Consensus 20 Givt~~Di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~ 95 (369)
|.++..+ +.++.+..++.+.+|+++|++ +++++++++++.++++.+.+++++++||++ + ++++|+++.+|++..
T Consensus 48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 4454433 234445568888999999997 689999999999999999999999999998 4 789999999999753
Q ss_pred HHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCC
Q 017600 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~ 175 (369)
... ......+.++|.+ ++++++++++.++++.|.+++.
T Consensus 126 ~~~---------------------------------------~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~ 163 (292)
T PRK15094 126 MRS---------------------------------------DAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRY 163 (292)
T ss_pred hhc---------------------------------------cCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCC
Confidence 100 0001225566753 5689999999999999999999
Q ss_pred ceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc-ccc--ccCCceecCCCCHHHHHHHH
Q 017600 176 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIM 235 (369)
Q Consensus 176 ~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~-~~m--~~~~~~v~~~~~l~~a~~~~ 235 (369)
+.+||+| .|.++|+||..|++..+...-.+..+..-. .+- ....+.++..+++.++.+.+
T Consensus 164 ~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 164 HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred EEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHh
Confidence 9999999 788999999999996665443222111110 111 12346667777777766665
No 35
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=1.6e-14 Score=111.86 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=95.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++ +........ ..++.++|.+++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 367789999999999999999999999998 78999999999997 444333322 457899998889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+++||+|++|+++|+||..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999998999999999999874
No 36
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.60 E-value=2.7e-14 Score=109.96 Aligned_cols=109 Identities=31% Similarity=0.481 Sum_probs=96.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.+++++.++.++.+.|.+.++..+||+++++++|+++.+|++ +....... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 46789999999999999999899999999989999999999997 55443332 35678999988999999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+.+.+.+||+|++|++.|+||..|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 37
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.60 E-value=1.3e-14 Score=112.22 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=97.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++++++++.++.++.+.|.+.+++++||++ +++++|+++..|++ ++..........++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 477899999999999999999999999999 78999999999997 5554433322367899999999999999999999
Q ss_pred HHHHHhCCCceeeEEcC-CCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~-~g~~~Givt~~di~~ 263 (369)
++.|.+.+.+.+||+|+ +|+++|++|..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999997 899999999999975
No 38
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.6e-14 Score=113.92 Aligned_cols=110 Identities=32% Similarity=0.388 Sum_probs=95.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCc-----------cccccccccccCC
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 219 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~-----------~~~~v~~~m~~~~ 219 (369)
++.+++++.++.++++.|.+.+.+.+||++ + |+++|+++..|++ +++...... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467889999999999999999999999998 5 8999999999997 544432211 1347888998889
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++++++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999998899999999999986
No 39
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.8e-14 Score=113.95 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=92.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccc-------------cccccccccC
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN 218 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~-------------~~v~~~m~~~ 218 (369)
++.++++++++.++++.|.+++++++||++ +|+++|+++..|++ +.......... ......|..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 477899999999999999999999999998 78999999999997 44432221111 1123466678
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999975
No 40
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=2e-14 Score=111.22 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=95.3
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
+..+.++.++.++++.|.+.+.+++||++ +++++|+++.+|+++.... .......++.++|..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67789999999999999999999999998 7899999999999733333 222234678899988999999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++...+||+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999999999999999975
No 41
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2.1e-14 Score=110.67 Aligned_cols=108 Identities=25% Similarity=0.368 Sum_probs=95.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++++++++.++++.|.+.+.+.+||++ +++++|+++..|++ +.+..... ..++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence 467789999999999999888899999999 68999999999997 54433322 457899998899999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+++||+|++|+++|++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 42
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.59 E-value=3.4e-14 Score=109.34 Aligned_cols=107 Identities=33% Similarity=0.402 Sum_probs=95.2
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
+++.+++++.++.++++.|.+++.+++||++ +|+++|+++.+|++ +..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~----~~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARD----KKSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhC----ccCHHHhcCCCCeEECCCCcHHH
Confidence 4578899999999999999999999999998 78999999999997 444332 23588889889999999999999
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++.|.+++.+.+||++++|++.|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999999999999975
No 43
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.59 E-value=4.5e-14 Score=108.67 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=95.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++.+.|.+.+++++||+++++++|+++.+|++ +....+.. ..++.++|..++.+++++.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 47789999999999999999999999999888999999999997 55443322 3578889988899999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 44
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2e-14 Score=111.73 Aligned_cols=108 Identities=26% Similarity=0.258 Sum_probs=92.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCc-c----ccccccccccCCceecCCC
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-D----STLVEKVMTPNPECATIDT 226 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~-~----~~~v~~~m~~~~~~v~~~~ 226 (369)
+++++++++++.++++.|.+.+.+.+||++ +++++|+++.+|++ ++....... . ..++.++|.+++.++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 478899999999999999999999999998 78999999999997 444322111 1 3578899988999999999
Q ss_pred CHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 227 ~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.++++.|.+.+ .+||+|++|+++|++|..|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998865 5999999999999999999986
No 45
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.9e-14 Score=109.41 Aligned_cols=109 Identities=30% Similarity=0.502 Sum_probs=95.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++.+.|.+.+++++||++ +++++|+++..|++ +.+..... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCC-CccCHHHhccCCCEEECCCCcHHHH
Confidence 467889999999999999999999999998 78999999999997 44433322 2457889998899999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++...+||+|++|++.|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999985
No 46
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.1e-14 Score=112.04 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=90.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCc---------cccccccccccCCce
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPEC 221 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~---------~~~~v~~~m~~~~~~ 221 (369)
++.++++++++.++++.|.+++++++||++ + ++++|+++.+|++ ++....... ....+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLV-EFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHH-HHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467889999999999999999999999999 5 8999999999997 433221100 001223467788899
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHH
Q 017600 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262 (369)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~ 262 (369)
+++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 99999999999999999999999999999999999999975
No 47
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=4e-14 Score=109.34 Aligned_cols=110 Identities=25% Similarity=0.391 Sum_probs=93.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.+++++.++.++++.|.+.+...++|.++++++|+++.+|+++............++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 46789999999999999988888888877789999999999997433322122224579999988889999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++...+||+| +|+++|+||..|+++
T Consensus 82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 999999999999998 599999999999985
No 48
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.58 E-value=6.8e-15 Score=140.75 Aligned_cols=187 Identities=19% Similarity=0.197 Sum_probs=146.0
Q ss_pred EEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHh-----CCCeEeeEee-CCeEEEEEehHH
Q 017600 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAK 91 (369)
Q Consensus 18 ~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~-----~~~~~lpVvd-~~~~vGiv~~~d 91 (369)
+++.++..+ +..+..-..+.+.+++++|+++++++++++++.+|++.|.+ ++...+||+| +++++|+++.+|
T Consensus 110 lL~~l~~~e--r~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~d 187 (449)
T TIGR00400 110 LLASSTEEE--RKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRD 187 (449)
T ss_pred HHHcCCHHH--HHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHH
Confidence 344555544 23333445677889999999999999999999999999975 4567889888 689999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHH
Q 017600 92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML 171 (369)
Q Consensus 92 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~ 171 (369)
++.. ....+++++|. ++++++++++++.++++.|.
T Consensus 188 Ll~a-------------------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~ 222 (449)
T TIGR00400 188 LILA-------------------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQ 222 (449)
T ss_pred HhcC-------------------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHH
Confidence 8632 01234778887 56888999999999999999
Q ss_pred HcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCC
Q 017600 172 ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250 (369)
Q Consensus 172 ~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g 250 (369)
+++...+||+| +|+++|++|.+|++ ..+.+. ..+++|.....+..+++.+.+++..|.+++...++|.
T Consensus 223 ~~~~~~lpVVD~~g~lvGiIt~~Dil-~~l~~~------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~---- 291 (449)
T TIGR00400 223 KYDFLAVPVVDNEGRLVGIVTVDDII-DVIQSE------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL---- 291 (449)
T ss_pred HcCCCEEeEEcCCCeEEEEEEHHHHH-HHHHhh------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----
Confidence 99999999999 89999999999998 444332 2367776666665567888999999999999999886
Q ss_pred cEEEEEeHHHHHH
Q 017600 251 DVVDVVDVIHITH 263 (369)
Q Consensus 251 ~~~Givt~~di~~ 263 (369)
.+.|++| ..++.
T Consensus 292 ~~~~~~t-~~ii~ 303 (449)
T TIGR00400 292 LVSSTFT-ATIIS 303 (449)
T ss_pred HHHHHHH-HHHHH
Confidence 4667776 44444
No 49
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.58 E-value=4.8e-14 Score=108.68 Aligned_cols=109 Identities=35% Similarity=0.490 Sum_probs=95.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|++..+...... ...++.++|..+++++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 47789999999999999999899999999989999999999997444433222 24578899988999999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++.+++||+++ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999987 99999999999975
No 50
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.58 E-value=3.3e-14 Score=110.11 Aligned_cols=110 Identities=28% Similarity=0.392 Sum_probs=97.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++++++++.++.++++.|.+.+.+.+||++ +++++|+++..+++ +++.........++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAEA 81 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence 467789999999999999888889999998 78999999999997 5555444333457999998889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|..++...+||+|++|+++|+||..||++
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 51
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.58 E-value=3.7e-14 Score=109.30 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=93.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.+++++.++.++.+.|.+.+.+++||++ + ++++|+++..|++ +....... ..++..+| +++.++++++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence 578899999999999999998999999998 6 8999999999997 55443322 14566666 57889999999999
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999998899999999999985
No 52
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.58 E-value=6.9e-14 Score=131.88 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=124.4
Q ss_pred HHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhh
Q 017600 31 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK 106 (369)
Q Consensus 31 ~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~ 106 (369)
++.+-.++++.+|+|+|++ ++++++.++++.++++.+.+++++++||+++ ++++|+++.+|++.....
T Consensus 181 ~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------- 252 (408)
T TIGR03520 181 ILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------- 252 (408)
T ss_pred HHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--------
Confidence 3344558889999999996 7899999999999999999999999999984 689999999999743100
Q ss_pred hhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCE
Q 017600 107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK 185 (369)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~ 185 (369)
...+++++|+ ++.++++++++.++++.|.+++.+..+|+| .|.
T Consensus 253 ---------------------------------~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~ 296 (408)
T TIGR03520 253 ---------------------------------KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG 296 (408)
T ss_pred ---------------------------------CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence 0112455665 478999999999999999999999999999 689
Q ss_pred EEEEeehHHHHHHHHhcCCCccccccccccc---cCCceecCCCCHHHHHHHHH
Q 017600 186 PRGILTSKDILMRVISQNLPADSTLVEKVMT---PNPECATIDTPIVDALHIMH 236 (369)
Q Consensus 186 ~~Giit~~dll~~~~~~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~~~ 236 (369)
.+|+||..|+++.+..+-.+..+ .-.+.+. ...+.++...++.++.+.|.
T Consensus 297 ~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 297 TSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred EEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhC
Confidence 99999999999666654333211 1122221 34577777888888877773
No 53
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=3.1e-14 Score=109.28 Aligned_cols=104 Identities=30% Similarity=0.284 Sum_probs=94.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++++++++.++.+.|.+.+.+.+||++ +|+++|+++..|++ ... ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~------~~~~v~~~~~~~~~~v~~~~~l~~~ 75 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GKD------PDTTIEKVMTKNPITVNPKTSVASV 75 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-ccc------ccccHHHHhcCCCeEECCCCCHHHH
Confidence 578899999999999999999999999998 79999999999996 221 1457899998889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 76 AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999999999985
No 54
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.58 E-value=4.8e-14 Score=108.75 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=94.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++++++++.++.++++.|.+.+...++|++++++.|+++..|++ ............++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 36678999999999999999999999999878899999999997 44433222235678899988899999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999999999985 89999999999985
No 55
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=2.9e-14 Score=114.24 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=94.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCc-----------------------cc
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS 208 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~-----------------------~~ 208 (369)
+++++++++++.++++.|.+.+.+.+||++ +++++|+++..|++ +........ ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence 467889999999999999999999999999 79999999999997 443321111 13
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
.+++++|.+++.++++++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4788999888899999999999999999999999999986 99999999999986
No 56
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=6.7e-14 Score=108.06 Aligned_cols=110 Identities=30% Similarity=0.459 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++++.|.+.+.+.+||+++++++|+++..|+++.+..........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 46778999999999999999999999999966999999999998444433222224578899988889999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++.+.+||+|++ +++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999865 9999999999975
No 57
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.3e-14 Score=111.59 Aligned_cols=110 Identities=33% Similarity=0.428 Sum_probs=96.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCC---------ccccccccccccCCcee
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~---------~~~~~v~~~m~~~~~~v 222 (369)
++.++.++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ +....... ....++.++|..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 467899999999999999999999999998 68999999999997 44332211 12457889998899999
Q ss_pred cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998899999999999985
No 58
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.5e-14 Score=107.46 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=84.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++++.+++++.++++.|.+++++.+||++ +++++|+++.+|+. +.. .+.++++++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence 477899999999999999999999999998 79999999999996 210 17899999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999986
No 59
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=2.3e-14 Score=111.11 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=91.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCceecCCCCH
Q 017600 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 228 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~-~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l 228 (369)
++.+++++.++.++++.|.+++ .+.+||++ +++++|+++.+|++ ....... ...++.++|.+ +++++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLR-AIPTSQW--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHH-HHHHhhc--cccchhhhhcccccceEECCCCcH
Confidence 4778999999999999987665 88999998 68999999999997 4433222 14578888864 35789999999
Q ss_pred HHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 229 ~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
.+|++.|.+++.+++||+|++|+++|++|..||++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999998899999999999874
No 60
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.5e-14 Score=109.48 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=94.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++++.|.+.+++++||++ +|+++|+++.+|++ .+...... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467899999999999999999999999998 79999999999997 44332211 1457888998899999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999997 99999999999874
No 61
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=6.7e-14 Score=107.72 Aligned_cols=108 Identities=23% Similarity=0.381 Sum_probs=96.1
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++.+++.+.++.++.+.|.+.+++++||+++++++|+++..|+. +...... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 357889999999999999998899999999889999999999997 5443332 3568899999999999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999999 899999999999975
No 62
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.3e-14 Score=113.40 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=94.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccc--------------------ccc
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV 211 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~--------------------~~v 211 (369)
++.+++++.++.++++.|.+.+++++||++ +++++|+++..|++ ++......... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 467899999999999999999999999998 78999999999997 44433221111 278
Q ss_pred ccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 212 ~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8889888999999999999999999999999999998 99999999999986
No 63
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=4.5e-14 Score=111.65 Aligned_cols=111 Identities=19% Similarity=0.290 Sum_probs=91.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH-----HHhcCCCccccccccccccCCcee----
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA---- 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~-----~~~~~~~~~~~~v~~~m~~~~~~v---- 222 (369)
++.++.+++++.++++.|.+++.+.+||++ +|+++|+++.+|+... ...........+++++|.+++..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 367899999999999999989999999998 7899999999999631 122111222467899997655433
Q ss_pred --cCCCCHHHHHHHHHhCCCceeeEEcCC-CcEEEEEeHHHHHH
Q 017600 223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (369)
Q Consensus 223 --~~~~~l~~a~~~~~~~~~~~l~Vvd~~-g~~~Givt~~di~~ 263 (369)
.+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368999999999999999999999986 79999999999986
No 64
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.56 E-value=3.7e-14 Score=136.18 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=111.8
Q ss_pred CCCCCChhhHHHHH-HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHH
Q 017600 122 GTSISGPNTFIETL-RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDIL 196 (369)
Q Consensus 122 g~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll 196 (369)
|.++++.+...+.. .+...-+..++.|. .+++++++++++.+++++|.+++++.+||+++ ++++|++|.+|+.
T Consensus 75 glGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 75 GIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred CeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 66666655333333 33333344667777 67899999999999999999999999999984 7999999999994
Q ss_pred HHHHhcCCCcccccccccccc--CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 197 MRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
. .. ....++.++|++ +++++++++++.+++++|.+++.+.+||+|++|+++|+||++||++..
T Consensus 153 -~-~~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 153 -F-VK----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred -h-cc----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 2 11 125689999987 789999999999999999999999999999999999999999999864
No 65
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.56 E-value=4.3e-14 Score=134.93 Aligned_cols=116 Identities=29% Similarity=0.359 Sum_probs=103.5
Q ss_pred CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C---CEEEEEeehHHHHHHHHhcCCCccccccccccc-
Q 017600 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT- 216 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~---~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~- 216 (369)
.+.++.|. +++++++++.++.++++.|.+++++++||++ + ++++|++|.+|++ ... . ...++.++|.
T Consensus 80 k~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~--~---~~~~V~dvm~~ 151 (450)
T TIGR01302 80 KRAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK--D---KGKPVSEVMTR 151 (450)
T ss_pred ccccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh--c---CCCCHHHhhCC
Confidence 35677787 5799999999999999999999999999999 5 6999999999996 321 1 2568999998
Q ss_pred cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
.+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 4899999999999999999999999999999999999999999999875
No 66
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=3.4e-14 Score=110.06 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=94.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-CCccccccccccccCCceecCCCCHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++.+|+++.+.... ......++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 467889999999999999988889999998 789999999999974333221 111246788999888999999999999
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++.|.+++.+++||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 999999999999999997 99999999999986
No 67
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.56 E-value=7.3e-14 Score=106.72 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=92.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++++++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ +.. ..++.++|.+.+.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence 477889999999999999999999999998 79999999999997 431 124778888788899999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++...+||+|++|+++|+||..|+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999899999999999975
No 68
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.56 E-value=8.7e-14 Score=106.76 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=94.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
.++.+++++.++.++.+.|.+.++.++||++ +++++|+++..|++ ..... ..++.++|.+.+.++++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~ 75 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRD 75 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence 3577899999999999999999999999998 68999999999996 43321 34688899889999999999999
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++.|.+.+.+++||+|++|+++|++|.+|+++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999999999999999999975
No 69
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.56 E-value=9.5e-14 Score=106.91 Aligned_cols=109 Identities=32% Similarity=0.359 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++..+++++++.++++.|.+.+.+.+||+++++++|+++.+|++ +....... ...++.++|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence 47789999999999999999899999999889999999999997 44433221 12367888989999999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999998899999999999975
No 70
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.55 E-value=8.4e-14 Score=107.00 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=91.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++.+.|.+.+.+++||+++++++|+++.+|+. +...........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 46788999999999999999999999999889999999999997 54433322224578889988899999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+ . ..+||+|++|+++|+||.+|+++
T Consensus 81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 99988 3 34789998999999999999986
No 71
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=4.2e-14 Score=113.22 Aligned_cols=110 Identities=27% Similarity=0.409 Sum_probs=95.1
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC----------------------Cccc
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS 208 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~----------------------~~~~ 208 (369)
.++.+++++.++.++++.|.+.++.++||++ +++++|+++..|++ +...... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 4578899999999999999999999999999 78999999999997 3322110 0123
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 568899988899999999999999999999999999999 899999999999985
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=8e-14 Score=110.48 Aligned_cols=110 Identities=23% Similarity=0.233 Sum_probs=93.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC-------------CCccccccccccccC
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPADSTLVEKVMTPN 218 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~-------------~~~~~~~v~~~m~~~ 218 (369)
++.+++++.++.++++.|.+.+.+.+||++ +++++|++|.+|++ .++... ......++.++|.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIV-DFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHH-HHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 467889999999999999999999999998 78999999999997 433211 001235688999888
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeEEc--CCCcEEEEEeHHHHHH
Q 017600 219 PECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH 263 (369)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~g~~~Givt~~di~~ 263 (369)
++++++++++.++++.|.+.+.+.+||++ ++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 99999999999999999999999999984 4699999999999985
No 73
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=5.9e-14 Score=110.12 Aligned_cols=111 Identities=28% Similarity=0.334 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcC---CC-----ccccccccccccCCceec
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT 223 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~---~~-----~~~~~v~~~m~~~~~~v~ 223 (369)
++.++.++.++.++++.|.+.+++++||++ +|+++|+++..|+++...... .. ....++.++|.+++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 477899999999999999989999999999 799999999999973211110 00 124567889988899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999998899999999999986
No 74
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.54 E-value=1.5e-13 Score=107.65 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=95.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCC----------ccccccccccccCCcee
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~~v 222 (369)
++.+++++.++.++++.|.+.+...+||+++++++|+++..|++ ........ ....++.++|.+++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 46788999999999999999999999999989999999999997 44322110 01356788998899999
Q ss_pred cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++++.+++..|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 75
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.54 E-value=8.4e-14 Score=137.81 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=108.2
Q ss_pred HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc
Q 017600 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 216 (369)
.+...+++++|. +++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.... .......++.++|.
T Consensus 443 ~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~-~~~~~~~~v~dim~ 519 (574)
T PRK01862 443 RLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD-KRDTTDKTAADYAH 519 (574)
T ss_pred HHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc-ccccccchHHHhcc
Confidence 455678899998 5678899999999999999999999999999 7899999999999733332 22222467899999
Q ss_pred cCCceecCCCCHHHHHHHHHhCCCceeeEEcCC--CcEEEEEeHHHHHHHHH
Q 017600 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAV 266 (369)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Givt~~di~~~~~ 266 (369)
+++.++++++++.++++.|.+++.+.+||+|++ |+++|+||+.|+++++.
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 999999999999999999999999999999976 47999999999998654
No 76
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.9e-13 Score=104.56 Aligned_cols=105 Identities=27% Similarity=0.385 Sum_probs=93.9
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++++++.+.++.++++.|.+.+.+.+||+++++++|+++..|++ .. ....++.++|..++.++++++++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~------~~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK------DPDETVEEIMSKDLVVAVPEMDIMDA 74 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc------CccccHHHhCCCCCeEECCCCCHHHH
Confidence 457889999999999999988888899999889999999999996 31 11457889998889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+++.+.+||+|++|+++|+|+..|+++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999985
No 77
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.53 E-value=1.4e-13 Score=131.96 Aligned_cols=107 Identities=27% Similarity=0.287 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCcccccccccccc--CCceecCCC
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDT 226 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~ 226 (369)
+++++++++++.++++.|.+++++.+||+++ ++++|+||.+|+. .. . ...+.+++++|++ +++++++++
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~ 180 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGT 180 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCC
Confidence 3578999999999999999999999999984 7999999999994 32 1 1235789999986 678999999
Q ss_pred CHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 227 ~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
++.+|+++|.+++++.+||+|++|+++|+||..|+++.
T Consensus 181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 99999999999999999999999999999999999984
No 78
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=1.6e-13 Score=103.36 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=82.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++++++++++.+|.+.|.+++++++||+| + |+++|+++..|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 467899999999999999999999999998 4 799999999998643
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll 196 (369)
..+.++.+++++.+|++.|.+++.+++||++ + |+++|++|.+|++
T Consensus 50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 0167899999999999999999999999999 5 8999999999996
No 79
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.3e-13 Score=108.04 Aligned_cols=110 Identities=32% Similarity=0.356 Sum_probs=94.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCC---------CccccccccccccCCceec
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECAT 223 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v~ 223 (369)
++.++++++++.++.+.|.+.+.+++||+++|+++|+++..|+++....... .....++.++|..++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE 81 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence 4678999999999999999999999999998999999999999733221111 1124578888988999999
Q ss_pred CCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 82 PDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999999999999997 99999999999985
No 80
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=2.1e-13 Score=103.94 Aligned_cols=103 Identities=27% Similarity=0.379 Sum_probs=92.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
++.++++++++.++++.|.+++.+.+||+++++++|+++.+|++ ... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 46778999999999999998999999999989999999999996 321 13468899988999999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.|.+++...+||+|+ |+++|+||..|++.
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 9999999999999997 99999999999874
No 81
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.2e-13 Score=108.36 Aligned_cols=110 Identities=23% Similarity=0.390 Sum_probs=95.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCC--------C--ccccccccccccCCcee
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL--------P--ADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~--------~--~~~~~v~~~m~~~~~~v 222 (369)
++.+++++.++.++.+.|.+.+++++||+++|+++|+++..|+++ .+.... + ....++.++|.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLK-AISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHH-HHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 477899999999999999999999999999899999999999973 332210 0 01346888998899999
Q ss_pred cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 82
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.52 E-value=3.2e-13 Score=130.34 Aligned_cols=172 Identities=21% Similarity=0.261 Sum_probs=130.6
Q ss_pred ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHh
Q 017600 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (369)
Q Consensus 42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (369)
.+.++|.++++++++++++.++++.|.+++++.+||+| +++++|+++.+|+....
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------ 143 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------ 143 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence 46788999999999999999999999999999999998 79999999999985320
Q ss_pred cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHH
Q 017600 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (369)
Q Consensus 121 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~ 199 (369)
....++.++|.+ .+++++++++++.++++.|.+++.+.+||++ +++++|++|.+|+++..
T Consensus 144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 012346677762 4689999999999999999999999999999 89999999999998443
Q ss_pred HhcCC--C-ccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcC-CCcEEEEEeHHHHHHH
Q 017600 200 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHA 264 (369)
Q Consensus 200 ~~~~~--~-~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Givt~~di~~~ 264 (369)
..... + .....+...|..+ + .-.+..+.|.+.+.+.+ |+|. +|+..|+++..+.++.
T Consensus 205 ~~p~a~~d~~g~l~V~aai~~~-----~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 205 EFPNACKDEQGRLRVGAAVGVG-----A--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred hCCCcccccCCCEEEEeecccC-----c--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 22111 0 0122344444322 2 12778888888999855 5554 6888787766666654
No 83
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.51 E-value=2.2e-13 Score=104.71 Aligned_cols=106 Identities=32% Similarity=0.438 Sum_probs=92.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecC-CCCHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV 229 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~-~~~l~ 229 (369)
+++.+++++.++.++.+.|.+.+.+.+||++ +|+++|+++.++++ ... ....++.++|...+.++.+ ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence 3577899999999999999999999999998 78999999999985 221 1245788999777777777 99999
Q ss_pred HHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999999999999999999985
No 84
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.51 E-value=3.1e-13 Score=104.78 Aligned_cols=106 Identities=27% Similarity=0.342 Sum_probs=91.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecC--C
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D 225 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~--~ 225 (369)
.++.++++++++.++++.|.+.+.+++||+++ ++++|+++.+|++ ... . ...++.++|.+++.++.. +
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~----~~~~v~~~~~~~~~~~~~~~~ 75 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-D----SETPLSEVMTPREVLVVAPTG 75 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-c----cCCCHHHhcCCCceEEECCCC
Confidence 35778899999999999999889899999983 7999999999985 322 1 134688999877777766 9
Q ss_pred CCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 226 ~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
No 85
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.51 E-value=2.6e-13 Score=130.32 Aligned_cols=113 Identities=27% Similarity=0.263 Sum_probs=100.2
Q ss_pred cccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccC--Cc
Q 017600 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PE 220 (369)
Q Consensus 147 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~--~~ 220 (369)
.|. ++++++++++++.++++.|.+++++.+||+++ ++++|++|.+|+. ... ....++.++|+++ ++
T Consensus 105 gmi--~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lv 176 (505)
T PLN02274 105 GFV--SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLV 176 (505)
T ss_pred ccc--CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcE
Confidence 355 57999999999999999999999999999984 7999999999994 322 1257899999876 78
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++....
T Consensus 177 tv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 177 TAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999987653
No 86
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.2e-13 Score=104.24 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++.+++++.+|++.|.+++.+.+||+| +|+++|+++..|+.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP------------------------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence 467889999999999999999999999998 689999999999864200
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
+.....++.++|. .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 51 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 51 --------NDYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred --------ccccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 0011234777886 5678999999999999999999999999998 69999999999996
No 87
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.1e-13 Score=104.82 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=88.8
Q ss_pred eCCCCcHHHHHHHHHHcC-----CceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHH
Q 017600 157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (369)
Q Consensus 157 v~~~~~l~~~~~~m~~~~-----~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 230 (369)
+.+++++.++++.|.+++ +..+||++ +++++|+++.+|++ +. . ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-LA-----D-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-cC-----C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 568899999999998777 46889998 78999999999996 31 1 245788999888999999999999
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
+++.|...+.+.+||+|++|+++|+||..|++++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999989999999999999974
No 88
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.50 E-value=5.7e-13 Score=103.57 Aligned_cols=109 Identities=34% Similarity=0.444 Sum_probs=95.9
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
.+++++.++.++.++...|.++++..+||++.++++|++|.+|++ +........ ..++.++|.++++++.++.++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence 578999999999999999999999999999877999999999998 444333221 126899998899999999999999
Q ss_pred HHHHHh-CCCceeeEEcCCC-cEEEEEeHHHHH
Q 017600 232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT 262 (369)
Q Consensus 232 ~~~~~~-~~~~~l~Vvd~~g-~~~Givt~~di~ 262 (369)
++.|.+ ++.+.+||+|+++ +++|++|..|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 7999999999886 999999999973
No 89
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.50 E-value=3.6e-13 Score=129.97 Aligned_cols=116 Identities=27% Similarity=0.332 Sum_probs=104.2
Q ss_pred CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccc-cCC
Q 017600 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNP 219 (369)
Q Consensus 142 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~ 219 (369)
..++++|. .++.+++++.++.++++.|.+++++++||++ +++++|++|.+|+. ... . ...++.++|. +++
T Consensus 87 k~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~ 158 (486)
T PRK05567 87 KRSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERL 158 (486)
T ss_pred hhhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCC
Confidence 34678887 6899999999999999999999999999999 89999999999995 321 1 2457999998 788
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
+++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++
T Consensus 159 v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 159 VTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 9999999999999999999999999999999999999999999875
No 90
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.50 E-value=1.1e-12 Score=125.03 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=136.5
Q ss_pred EEEEcCCCcEEEEEeHHHHHHHHHhcc------C---------CCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCe
Q 017600 9 LLLTDSNALLCGILTDKDIATRVIARE------L---------NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFR 73 (369)
Q Consensus 9 ~~V~d~~~~~~Givt~~Di~~~~~~~~------~---------~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~ 73 (369)
+|++... ..-+|+.+++..+...+ . .+...++.++|.++++++.+++++.+|++.|.+++++
T Consensus 45 ~Pi~sa~---Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s 121 (479)
T PRK07807 45 IPLVVAN---MTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHG 121 (479)
T ss_pred cceeecC---CcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCc
Confidence 5666432 45677777765555544 2 2335678899999999999999999999999999999
Q ss_pred EeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCC
Q 017600 74 HLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152 (369)
Q Consensus 74 ~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 152 (369)
.+||+| +++++|+++.+|+... ....+++++|+ .
T Consensus 122 ~l~VVD~~gklvGIVT~rDL~~~-------------------------------------------~~~~~V~diMt--~ 156 (479)
T PRK07807 122 AVVVVDEEGRPVGVVTEADCAGV-------------------------------------------DRFTQVRDVMS--T 156 (479)
T ss_pred eEEEECCCCeEEEEEeHHHHhcC-------------------------------------------ccCCCHHHhcc--C
Confidence 999998 6899999999997321 01134778887 6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
+++++++++++.++++.|.+++...+||+| +++++|+||.+|++ +....... ...-...+..... .......+.
T Consensus 157 ~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl-~~~~~~~~--~~~~g~l~V~aav--~~~~~~~~~ 231 (479)
T PRK07807 157 DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGAL-RATIYTPA--VDAAGRLRVAAAV--GINGDVAAK 231 (479)
T ss_pred CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHH-HHhhCCch--hhhhhccchHhhh--ccChhHHHH
Confidence 799999999999999999999999999999 79999999999998 43322110 0000011111111 223346788
Q ss_pred HHHHHhCCCceeeEEcC-CCc
Q 017600 232 LHIMHDGKFLHLPVVDR-DGD 251 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~-~g~ 251 (369)
+..|.+.+.+. +++|- +|+
T Consensus 232 a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 232 ARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred HHHHHHhCCCE-EEEeccCCc
Confidence 88888888876 56664 444
No 91
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.49 E-value=5e-13 Score=101.83 Aligned_cols=100 Identities=26% Similarity=0.241 Sum_probs=89.3
Q ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHH
Q 017600 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 234 (369)
Q Consensus 155 ~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~ 234 (369)
.+++++.++.++++.|.+.+.+++||+++++++|+++.+|++ ... ..++.++|.+.+.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 467899999999999999999999999889999999999996 321 235777888889999999999999999
Q ss_pred HHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 235 MHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 235 ~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
|.+++.+.+||+| +|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999998 699999999999975
No 92
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.49 E-value=3.8e-13 Score=128.78 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=104.6
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHH-----cCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccc
Q 017600 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE 212 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-----~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~ 212 (369)
+...+++++|+ +++.+++++.++.++++.|.+ .+...++|++ +++++|+++.+|++ .. . .+.+++
T Consensus 128 ~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~a----~--~~~~v~ 198 (449)
T TIGR00400 128 YSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-LA----K--PEEILS 198 (449)
T ss_pred CCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-cC----C--CCCcHH
Confidence 34578999998 689999999999999999975 3456788888 78999999999996 21 1 245799
Q ss_pred cccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 213 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
++|.++++++++++++.+|++.|.+++...+||||++|+++|+||.+|+++.+..
T Consensus 199 ~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 199 SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 9999889999999999999999999999999999999999999999999987654
No 93
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=3.1e-13 Score=124.71 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=100.8
Q ss_pred ccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 017600 39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (369)
Q Consensus 39 ~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~ 115 (369)
...+|+++|.+ +++++++++++.+|++.|.++++..+||++ +|+++|+++..|+.+....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~----------------- 262 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM----------------- 262 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence 45679999997 899999999999999999999888888888 7999999999997642100
Q ss_pred hHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHH
Q 017600 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195 (369)
Q Consensus 116 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dl 195 (369)
+. .....+++++|. +++.++.+++++.++++.|.+++.+++||+++++++|++|.+|+
T Consensus 263 ------~~--------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 263 ------GI--------------DLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ------CC--------------CcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 00 011245888998 57899999999999999999999999999998899999999999
Q ss_pred H
Q 017600 196 L 196 (369)
Q Consensus 196 l 196 (369)
+
T Consensus 321 l 321 (326)
T PRK10892 321 L 321 (326)
T ss_pred H
Confidence 7
No 94
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.48 E-value=8.5e-13 Score=101.32 Aligned_cols=110 Identities=34% Similarity=0.440 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++.+|++ .............+.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 467789999999999999998999999998 68999999999997 4443332221223677888899999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999975
No 95
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=7.2e-13 Score=102.74 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=90.3
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
.+.++.+++++.+|++.|.+++...+||+| +|+++|+++..++++.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~----------------------------- 52 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC----------------------------- 52 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc-----------------------------
Confidence 366889999999999999999999999998 78999999999987542100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.......++.++|. .+++++.+++++.++++.|.+++..++||++ +|+++|+++.+|++
T Consensus 53 -------~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 53 -------GGPGCTAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL 112 (114)
T ss_pred -------CCCcccCCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence 00012234667776 5788999999999999999999999999998 78999999999986
No 96
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.47 E-value=6.1e-13 Score=104.10 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=93.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCC---------CccccccccccccCCcee
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA 222 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v 222 (369)
++.++++++++.++.+.|.+.+++++||++ +++++|+++..|++ +...... .....++.++|.++++++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 467889999999999999999999999999 69999999999997 4332110 112456889998899999
Q ss_pred cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
++++++.++++.|.+++...+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999986 99999999999985
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.46 E-value=3.4e-12 Score=118.41 Aligned_cols=192 Identities=22% Similarity=0.295 Sum_probs=140.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
...+.++...++.+|+..+..++++..|+++ ...++|+++..|++..+........
T Consensus 76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~---------------------- 133 (381)
T KOG1764|consen 76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS---------------------- 133 (381)
T ss_pred ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC----------------------
Confidence 4678899999999999999999999999998 5889999999999887654332100
Q ss_pred ChhhHHHHHHH--HhCCCCcccc--ccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe--CCEEEEEeehHHHHHHHH
Q 017600 127 GPNTFIETLRE--RMFRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVI 200 (369)
Q Consensus 127 ~~~~~~~~~~~--~~~~~~v~~i--m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d--~~~~~Giit~~dll~~~~ 200 (369)
..+....+.. ......+..+ ....+.++.+.+..++.++...+.+++++++||.| .+.+..++|.+-++ +++
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl-~~l 211 (381)
T KOG1764|consen 134 -SLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRIL-KFL 211 (381)
T ss_pred -cHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHH-HHH
Confidence 0000000100 0111111111 11113448899999999999999999999999998 67999999999998 444
Q ss_pred hcCCCccccccccccc-----------cCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017600 201 SQNLPADSTLVEKVMT-----------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 201 ~~~~~~~~~~v~~~m~-----------~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~ 266 (369)
...... .+...+|. .+...+.+++++.+|+++|..+++..+||||+.|+.+|.++..|+.....
T Consensus 212 ~~~~~~--~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~ 286 (381)
T KOG1764|consen 212 WLNGRL--LPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAR 286 (381)
T ss_pred HHhhcc--cccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhh
Confidence 332221 11222221 25789999999999999999999999999999999999999999998543
No 98
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.46 E-value=4.7e-13 Score=120.12 Aligned_cols=112 Identities=27% Similarity=0.361 Sum_probs=98.8
Q ss_pred CCccccccCCCc-eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC
Q 017600 142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (369)
Q Consensus 142 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 219 (369)
.+++++|. ++ ++++++++++.++++.|.+.+.+++||++ +++++|+++.+|+. +....... ...+++++|.+++
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~~ 230 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLGP 230 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCCC
Confidence 56889998 45 88999999999999999999999999999 78999999999997 54433222 2567999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEe
Q 017600 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257 (369)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt 257 (369)
.++++++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999999999999985
No 99
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1.2e-12 Score=98.29 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=82.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 577899999999999999999999999998 6999999999998642
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
..+.++++++++.++++.|.+++.+++||++ +++++|++|.+|++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 1277899999999999999999999999998 68999999999996
No 100
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=4.5e-13 Score=103.82 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=82.1
Q ss_pred CccCCcCEEEEEcCC-CcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee
Q 017600 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE 79 (369)
Q Consensus 1 M~~~~~~~~~V~d~~-~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd 79 (369)
|.+++.+.+||+|++ ++++|++|.+|+++.+.....+....++.++|.++++++++++++.+|++.|.+++...+||++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence 456788899999987 8999999999998656554445556789999998999999999999999999999999999998
Q ss_pred CCeEEEEEehHHHHH
Q 017600 80 NGEVIALLDIAKCLY 94 (369)
Q Consensus 80 ~~~~vGiv~~~dil~ 94 (369)
+|+++|+++..+++.
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 99 NNELIGIISLTDIFL 113 (114)
T ss_pred CCEEEEEEEHHHhhc
Confidence 899999999999864
No 101
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.46 E-value=2e-13 Score=127.12 Aligned_cols=94 Identities=33% Similarity=0.469 Sum_probs=89.1
Q ss_pred CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC
Q 017600 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 80 (369)
|.++|+++++++++++++.||+|.+|+.++++.++.+. ..+|+++|+.++++++.++.+.+|+-.|.+++++++||+++
T Consensus 175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 67899999999999999999999999999999888766 78999999999999999999999999999999999999999
Q ss_pred CeEEEEEehHHHHHH
Q 017600 81 GEVIALLDIAKCLYD 95 (369)
Q Consensus 81 ~~~vGiv~~~dil~~ 95 (369)
|+++|+++..|++..
T Consensus 254 gq~~Gilt~~dIl~l 268 (610)
T COG2905 254 GQPLGILTLTDILRL 268 (610)
T ss_pred CeeeEEeeHHHHHHh
Confidence 999999999999875
No 102
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.46 E-value=1e-12 Score=100.29 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=88.0
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEeC----CEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCC
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~ 227 (369)
.....++++.++.++.+.+.+.+.+.+||+++ ++++|+++.+|+. +.... +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~ 69 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS 69 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence 35778899999999999999998889999984 7899999999996 43321 77788899999999
Q ss_pred HHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+.++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 99999999999999999995 789999999999986
No 103
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.2e-12 Score=105.99 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=94.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHHHHhcCCC---------------------------
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP--------------------------- 205 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~--------------------------- 205 (369)
+++++++++++.++++.|.+.+++.+||+++++++|+++..|++ +++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 47789999999999999999999999999888999999999997 44432110
Q ss_pred -----ccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 206 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 206 -----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
....++.++|..++.++++++++.+++..|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0134677888889999999999999999999999999999987 99999999999975
No 104
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=1.2e-12 Score=101.38 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=89.0
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCC-CeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~-~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
+++.++++++++.+|++.|.+++ .+.+||+| +|+++|+++..|++.....
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~---------------------------- 52 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS---------------------------- 52 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh----------------------------
Confidence 35778999999999999997775 88999998 5899999999998764210
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|.+...++++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 53 -----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 53 -----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred -----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 011234667776433467899999999999999999999999998 68999999999986
No 105
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=6.9e-13 Score=103.82 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=88.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.+|++.|.+++++++||++ +|+++|+++..|++.....+.. .
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~------------------------~- 55 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY------------------------N- 55 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc------------------------c-
Confidence 4678899999999999999999999999998 7999999999999864211100 0
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....+...+ ....+|. .++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 56 --~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 56 --NLDLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred --cccCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 0000000000 0123343 4578999999999999999999999999999 68999999999986
No 106
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.44 E-value=5.2e-12 Score=120.39 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=100.7
Q ss_pred cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017600 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
...++.++|.++++++.+++++.+++++|.+++++.+||+|+++++|+++.+|+...
T Consensus 86 ~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~----------------------- 142 (475)
T TIGR01303 86 AFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV----------------------- 142 (475)
T ss_pred hhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC-----------------------
Confidence 356788999999999999999999999999999999999998899999999997321
Q ss_pred HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHH
Q 017600 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~ 197 (369)
....+++++|+ .+++++++++++.++++.|.+++.+.+||++ +++++|+||.+|+++
T Consensus 143 --------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 143 --------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred --------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 01134778888 5799999999999999999999999999999 899999999999983
No 107
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.43 E-value=1.7e-12 Score=125.32 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=102.4
Q ss_pred HHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcccccccccc
Q 017600 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (369)
Q Consensus 137 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m 215 (369)
+.+...+++++|. +++.++.+++++.++++.|.+++++.+||++ +++++|+||.+|+++.+. ........++.++|
T Consensus 330 ~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~~im 406 (454)
T TIGR01137 330 DVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF-AGKANPDDAVSKVM 406 (454)
T ss_pred HHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh-ccCCCcCCCHHHhc
Confidence 3466678999998 5799999999999999999999999999998 789999999999974333 32222245799999
Q ss_pred ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
.+++.++++++++.++++.|.+++ .+||+++|+++|+||..|+++++
T Consensus 407 ~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 888899999999999999998864 35555579999999999999853
No 108
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=2.1e-12 Score=100.77 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=90.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.+++...+||+| +++++|+++..++++.....
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----------------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----------------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence 568899999999999999999999999998 58999999999987652100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C---CEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~---~~~~Giit~~dll 196 (369)
......++.++|.....+.++++++++.++++.|.+++.+.+||++ + ++++|++|.+|++
T Consensus 53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 0011234566775213688999999999999999999999999998 5 6999999999986
No 109
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=5.2e-12 Score=97.11 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=90.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++++++++++++.++.+.|.++++..+||+++|+++|+++..++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------ 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------ 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence 46788999999999999999999999999998999999999998653110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
.....++.++|. ..+.++++++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 52 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 52 ---------GLGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ---------ccccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 012234666776 568899999999999999999999999999988999999999986
No 110
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=3.9e-12 Score=96.83 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=88.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.++++.|.+++.+.+||+++++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 56788999999999999999999999999999999999999986420
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
...++.++|. .++.++++++++.++++.|.+++.+.+||+++++++|++|.+|++
T Consensus 49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 0123556665 568899999999999999999999999999989999999999985
No 111
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.42 E-value=1.4e-12 Score=120.25 Aligned_cols=117 Identities=12% Similarity=0.168 Sum_probs=100.3
Q ss_pred ccccccccccC--CeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017600 40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 40 ~~~v~dim~~~--~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
..+|+++|.++ ++++++++++.+|++.|.+++...+||+| +|+++|+++..|+......
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------ 257 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------ 257 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence 46799999988 99999999999999999999999999998 7899999999997653110
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017600 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl 195 (369)
......++.++|. .+++++.+++++.++++.|.+++...+||++ +++++|++|.+|+
T Consensus 258 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 258 --------------------GGALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred --------------------CCCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 0011234778887 5788999999999999999999999999999 7899999999999
Q ss_pred H
Q 017600 196 L 196 (369)
Q Consensus 196 l 196 (369)
+
T Consensus 316 ~ 316 (321)
T PRK11543 316 Y 316 (321)
T ss_pred H
Confidence 7
No 112
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.1e-12 Score=99.83 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=91.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CceEEEEeCCEEEEEeehHHHHHHHHhcCC---CccccccccccccCCceecCCCCH
Q 017600 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI 228 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~-~~~~~V~d~~~~~Giit~~dll~~~~~~~~---~~~~~~v~~~m~~~~~~v~~~~~l 228 (369)
+++++++++++.++++.|...+ ++.+||+++|+++|+++..|++ +...... .....++.++|.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 3667899999999999998876 8899999889999999999997 4433210 012457889998899999999999
Q ss_pred HHHHHHHHhCCCc---eeeEEcCCCcEEEEEeHHHHHH
Q 017600 229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 229 ~~a~~~~~~~~~~---~l~Vvd~~g~~~Givt~~di~~ 263 (369)
.+++..|.+++.. ..+|++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999988864 3478888999999999999985
No 113
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=7.2e-12 Score=95.64 Aligned_cols=103 Identities=28% Similarity=0.409 Sum_probs=90.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHH
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 231 (369)
++.++.++.++.+++..|.+.+++.+||++ +++++|+++.++++ .. . ...++.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~----~--~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN----P--EEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc----c--ccchHHHHhcCCCceECCCCCHHHH
Confidence 467888999999999999988999999998 68999999999996 31 1 1345778888889999999999999
Q ss_pred HHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
+..|.+++.+.+||+| +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 479999999999875
No 114
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=6.6e-12 Score=98.69 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=93.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.++.+.|.+++++.+||++ +|+++|+++..+++.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~------------------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR------------------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence 5788999999999999999999999999998 59999999999987542211000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.............++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 57 --PLRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred --hhhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 00000001122345777886 5789999999999999999999999999999 89999999999996
No 115
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=9.1e-12 Score=97.89 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=88.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++.++.+++++.+|++.|.+++++++||+| + |+++|+++..|+++...........
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~---------------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG---------------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc----------------------
Confidence 567889999999999999999999999998 5 8999999999988753322110000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dl 195 (369)
..... .......++|. .++.++++++++.+|++.|.+++.+++||++ +++++|+||.+|+
T Consensus 60 ----~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 60 ----LDPLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ----hhhhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 00000 00011234554 5788999999999999999999999999998 7899999999998
No 116
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.4e-12 Score=97.14 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=88.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+.++..+||++ +|+++|+++..++++.....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG----------------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence 567889999999999999989999999998 58999999999987542100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. .++.+++++.++.++++.|.+++...+||++ +++++|++|.+|+.
T Consensus 53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 01124666665 5688999999999999999999999999998 59999999999985
No 117
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=1.5e-11 Score=94.84 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=89.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
.+.++.+++++.++++.|.+++...++|.++|+++|+++..+++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG----------------------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence 467889999999999999888888888888899999999999876522100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......++.++|. ..+.++++++++.++++.|.+++..++||+++++++|++|.+|++
T Consensus 53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 0001234667776 568889999999999999999999999999989999999999996
No 118
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=5.8e-12 Score=96.55 Aligned_cols=103 Identities=14% Similarity=0.240 Sum_probs=88.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
.++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-------------------------------- 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------------------------------- 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc--------------------------------
Confidence 3678899999999999999999999999998 6999999999998632
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. ..+.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus 50 -----------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 50 -----------DPDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred -----------cccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 01123556665 4688999999999999999999999999998 88999999999986
No 119
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.38 E-value=1.2e-11 Score=94.97 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=89.4
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.++++++++.++++.|.+++++.+||+++++++|+++..++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 367789999999999999999999999999889999999999987641100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. .++.+++++.++.++++.|.+.+.+.+||++ +|++.|+++.+|++
T Consensus 52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 00123555665 5788999999999999999999999999998 69999999999986
No 120
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=1.1e-11 Score=94.46 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++++++++.+|++.|.+++.+.+||++ +|+++|+++..+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 567889999999999999999999999998 79999999999986430
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
..++.++|. ..+.++.+++++.++++.|.+++.+.+||++ +++++|+++.+|++
T Consensus 50 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 50 ------------GGCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred ------------ccchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 012455665 4567899999999999999999999999998 68999999999986
No 121
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.38 E-value=9.3e-12 Score=95.81 Aligned_cols=109 Identities=24% Similarity=0.321 Sum_probs=90.5
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.+++++.++.++.+.|.+++++.+||+++++++|+++..+++......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE----------------------------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence 367789999999999999999999999999989999999999987532110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......++.++|. .+++++++++++.++++.|.+.+.+++||+++|+++|++|.+|++
T Consensus 52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 0001234566665 578899999999999999999999999999889999999999996
No 122
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.38 E-value=9.7e-12 Score=96.43 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=89.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.++++.|.+.++..+||+| +|+++|+++..+++.......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE--------------------------- 53 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------
Confidence 3567889999999999999999999999998 699999999999876421100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C--CEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~--~~~~Giit~~dll 196 (369)
.....++.++|. .++.++.+++++.++++.|.+++...+||++ + |+++|++|.+|++
T Consensus 54 ----------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 54 ----------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred ----------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 001123556665 5788999999999999999999999999998 5 7999999999996
No 123
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=9.7e-12 Score=99.52 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=93.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++.+++++.+|++.|.++++..+||+| +|+++|+++..+++............... . .+ ....+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~-~--~~---~~~~~------ 69 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKS-I--KM---KRKAG------ 69 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhh-h--hh---hhhcc------
Confidence 567889999999999999999999999998 59999999999998753211000000000 0 00 00000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
. .......+...+++++|. .++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 70 -~-~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 70 -Q-KRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred -c-ccccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 0 000001123456888887 568899999999999999999999999999989999999999986
No 124
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.6e-12 Score=98.32 Aligned_cols=94 Identities=35% Similarity=0.615 Sum_probs=80.4
Q ss_pred CccCCcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC
Q 017600 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (369)
Q Consensus 1 M~~~~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 80 (369)
|.+++...+||+|++++++|+++..|+++.+..........++.++|.+++.++.+++++.++++.|.+++.+.+||+++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 19 MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence 34567889999998899999999999986554333333356899999889999999999999999999999999999998
Q ss_pred CeEEEEEehHHHHH
Q 017600 81 GEVIALLDIAKCLY 94 (369)
Q Consensus 81 ~~~vGiv~~~dil~ 94 (369)
|+++|+++..++++
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04623 99 GKLVGIVSIGDVVK 112 (113)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999864
No 125
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=1.1e-11 Score=119.06 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=97.6
Q ss_pred ccccccc---cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHH
Q 017600 42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (369)
Q Consensus 42 ~v~dim~---~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~ 114 (369)
+|+++|. .+++++++++++.+|++.|.++++..+||+|+ ++++|+++..|+...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~------------------- 155 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS------------------- 155 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence 4666664 45578999999999999999999999999984 799999999997421
Q ss_pred HhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehH
Q 017600 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (369)
Q Consensus 115 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~ 193 (369)
......+++++|++.++++++++++++.+|++.|.++++..+||+| +++++|+||.+
T Consensus 156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 0022356889998655899999999999999999999999999999 78999999999
Q ss_pred HHHH
Q 017600 194 DILM 197 (369)
Q Consensus 194 dll~ 197 (369)
|+++
T Consensus 214 Dilk 217 (502)
T PRK07107 214 DYDS 217 (502)
T ss_pred HHHh
Confidence 9983
No 126
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.6e-11 Score=94.34 Aligned_cols=105 Identities=28% Similarity=0.412 Sum_probs=88.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++.+++++.++++.|.++++..+||++ +|+++|+++..+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------------------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence 5778899999999999999999999999998 68999999999987541100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
..++.++|. .++.++++++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 012455565 4688899999999999999999999999998 78999999999985
No 127
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.2e-12 Score=96.26 Aligned_cols=110 Identities=25% Similarity=0.413 Sum_probs=90.8
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.+++++.+||++ +++++|+++..++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY--------------------------- 54 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence 567899999999999999999999999998 6899999999998765332100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......++.++|. .++.++.+++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 55 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 55 --------HCDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred --------ccCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 0011234667776 468889999999999999999999999999889999999999996
No 128
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.7e-11 Score=94.59 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=90.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+++.+.+||+| +++++|+++..+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 467889999999999999999999999998 68999999999987542210
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
+.....++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 1122334667776 5688999999999999999999999999998 78999999999986
No 129
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.4e-11 Score=96.39 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=93.3
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++++++.+++++.++++.|.+++++.+||+++|+++|+++..+++..........
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 55 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV------------------------- 55 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc-------------------------
Confidence 3677899999999999999999999999999999999999999876432110000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
+...........++.++|. .++.++++++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus 56 --~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 56 --RDRHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred --cchhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 0000111122345667776 568899999999999999999999999999889999999999996
No 130
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.37 E-value=1.4e-11 Score=94.70 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=89.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.+|++.|.++++..+||+++++++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~----------------------------- 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP----------------------------- 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence 467889999999999999999999999999999999999999876421000
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. .+++++++++++.++++.|.+.+.+.+||++ +|++.|+++.+|++
T Consensus 53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 01234666775 5688899999999999999999999999998 69999999999986
No 131
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=9.4e-12 Score=96.18 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=89.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++++++++.++++.|.+++.+.+||++ +|+++|+++..++++.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence 456789999999999999999999999998 68999999999987542110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|. ..+.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 001234666776 5688899999999999999999999999998 78999999999986
No 132
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.36 E-value=2e-11 Score=93.51 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=88.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++++++++.++++.|.++++..+||++ +++++|+++..+++....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 4677899999999999999999999999998 589999999999865310
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
...++.++|. ..+.++++++++.++++.|.+.+.+++||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 0123556665 5688999999999999999999999999998 78999999999986
No 133
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.5e-11 Score=94.71 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=89.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+++++.+||++ +|+++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 567889999999999999999999999998 59999999999987541100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
.....++.++|. +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 001224566665 578899999999999999999999999999888999999999986
No 134
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.9e-11 Score=94.24 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=89.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
++.++++++++.++++.|.+++.+.+||+++++++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence 567889999999999999999999999999779999999999886532100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......++.++|. .++.++.+++++.++++.|.+.+...+||+++++++|+++.+|++
T Consensus 53 -------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 53 -------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred -------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 0011234667776 568889999999999999999999999999955999999999986
No 135
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=9.7e-12 Score=99.45 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=94.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++.+++++.++++.|.+++++++||+| +++++|+++..+++........... .........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~---~~~~~~~~~----------- 67 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRR---ARWLDLLAG----------- 67 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchh---hhHHHHhcc-----------
Confidence 5778899999999999999999999999998 6899999999998764321100000 000000000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
........ ......++.++|. .++.++.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 68 ~~~~~~~~-~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 68 AEELAAAF-VRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred hHHHHHHH-HHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 00000000 0123346788886 578999999999999999999999999999989999999999986
No 136
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.36 E-value=2.2e-11 Score=92.71 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=85.2
Q ss_pred eEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhH
Q 017600 52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF 131 (369)
Q Consensus 52 i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (369)
+++++++++.++++.|.+.++..+||+++++++|+++..+++...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 467899999999999999999999999889999999999886420
Q ss_pred HHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 132 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
..++.++|. ..+.+++++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 012445555 457899999999999999999999999999989999999999986
No 137
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.36 E-value=3.8e-12 Score=100.34 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=88.9
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++.+++++.++++.|.++++..+||++ +|+++|+++..+++.......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~--------------------------- 54 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK--------------------------- 54 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------
Confidence 4678899999999999999999999999998 689999999999876422110
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHH---------HcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML---------ELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~---------~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....+++++|. .++.++.+++++.++.+++. +.+...+||++ +|+++|++|.+|++
T Consensus 55 ----------~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~ 121 (124)
T cd04608 55 ----------VQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL 121 (124)
T ss_pred ----------cCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence 012346888997 67899999999999998653 33567778887 68999999999997
No 138
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.35 E-value=2.5e-11 Score=93.41 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
+++++++++++.++++.|.+++...+||+|+|+++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 56788999999999999999999999999888999999999987542100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......++.++|. .++..+++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus 52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 0011234666776 568899999999999999999999999999988999999999986
No 139
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.35 E-value=1.7e-11 Score=95.85 Aligned_cols=119 Identities=27% Similarity=0.373 Sum_probs=92.8
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++.++++++++.++++.|.++++..+||+++|+++|+++..+++......... ...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~-----------------------~~~ 57 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATT-----------------------LDI 57 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccc-----------------------ccc
Confidence 357789999999999999999999999999989999999999987652210000 000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
. .........++.++|. .++.++++++++.+++..|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 58 ~----~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 58 W----ELYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred h----hhhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 0 0000122345677786 5788999999999999999999999999998 69999999999996
No 140
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.35 E-value=2.1e-11 Score=93.68 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=89.4
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++++++++++++.++++.|.+.+++++||+++++++|+++..+++......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------------- 51 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEG----------------------------- 51 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcC-----------------------------
Confidence 467889999999999999999999999999889999999999987541100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|. .++.++.+++++.++++.|.+.+.+.+||++ +++++|++|..|++
T Consensus 52 ---------~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 52 ---------REATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred ---------cccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 000023455665 5689999999999999999999999999998 69999999999986
No 141
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.34 E-value=3.7e-12 Score=125.57 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=101.3
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc---
Q 017600 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ--- 202 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~--- 202 (369)
++.+..+.........+++++|+. ++++++++++++.++.+.|.+++++.+||+| +|+++|++|.+|++ .....
T Consensus 231 t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~-~~~~~~~i 308 (546)
T PRK14869 231 TPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL-SPVRKKVI 308 (546)
T ss_pred ecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh-ccccCceE
Confidence 344556666666677889999983 4799999999999999999999999999999 89999999999998 32221
Q ss_pred ------------CCCc-------cccccccccccCCcee---cCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHH
Q 017600 203 ------------NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260 (369)
Q Consensus 203 ------------~~~~-------~~~~v~~~m~~~~~~v---~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~d 260 (369)
+... ...++.++|+..++.+ +...+..-+.+.|.+.++...|++. ..-+.||+|-++
T Consensus 309 LVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~ 387 (546)
T PRK14869 309 LVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTL 387 (546)
T ss_pred EEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhc
Confidence 0000 0124556777666555 4467778889999999998888885 456888888777
Q ss_pred HHH
Q 017600 261 ITH 263 (369)
Q Consensus 261 i~~ 263 (369)
.++
T Consensus 388 ~f~ 390 (546)
T PRK14869 388 LFK 390 (546)
T ss_pred Ccc
Confidence 665
No 142
>PRK11573 hypothetical protein; Provisional
Probab=99.34 E-value=4.1e-11 Score=113.16 Aligned_cols=130 Identities=12% Similarity=0.168 Sum_probs=104.7
Q ss_pred ccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhhH
Q 017600 34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKA 109 (369)
Q Consensus 34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~~ 109 (369)
+-.++++.+|+++|++ ++++++.++++.++++.+.+++++++||+++ ++++|++..+|++.......
T Consensus 180 ~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~--------- 250 (413)
T PRK11573 180 SVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK--------- 250 (413)
T ss_pred HHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC---------
Confidence 4457889999999985 6799999999999999999999999999973 88999999999985311000
Q ss_pred HHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEE
Q 017600 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (369)
Q Consensus 110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~G 188 (369)
. .....+.+++ +++.+++++.++.++++.|++++.+...|+| .|...|
T Consensus 251 --------------~--------------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~G 299 (413)
T PRK11573 251 --------------E--------------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQG 299 (413)
T ss_pred --------------c--------------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEE
Confidence 0 0000122334 3588999999999999999999999999999 789999
Q ss_pred EeehHHHHHHHHhcC
Q 017600 189 ILTSKDILMRVISQN 203 (369)
Q Consensus 189 iit~~dll~~~~~~~ 203 (369)
+||..|++..++.+-
T Consensus 300 iVTleDilEeivGei 314 (413)
T PRK11573 300 LVTVEDILEEIVGDF 314 (413)
T ss_pred EeeHHHHHHHHhCCC
Confidence 999999997776543
No 143
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.34 E-value=8.3e-12 Score=123.68 Aligned_cols=122 Identities=12% Similarity=0.157 Sum_probs=101.7
Q ss_pred CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017600 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
+...+++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.....
T Consensus 444 L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~----------------- 506 (574)
T PRK01862 444 LRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK----------------- 506 (574)
T ss_pred HhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-----------------
Confidence 446789999999999999999999999999999999999998 68999999999987532110
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-C--CEEEEEeehH
Q 017600 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSK 193 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~--~~~~Giit~~ 193 (369)
+.....++.++|. +++.++++++++.++++.|.+++.+.+||+| + ++++|++|.+
T Consensus 507 --------------------~~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~ 564 (574)
T PRK01862 507 --------------------RDTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT 564 (574)
T ss_pred --------------------cccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence 0011234667776 5688999999999999999999999999998 4 4899999999
Q ss_pred HHHHH
Q 017600 194 DILMR 198 (369)
Q Consensus 194 dll~~ 198 (369)
|+++.
T Consensus 565 DIl~~ 569 (574)
T PRK01862 565 SLLDA 569 (574)
T ss_pred HHHHH
Confidence 99843
No 144
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2e-11 Score=96.04 Aligned_cols=120 Identities=27% Similarity=0.362 Sum_probs=91.9
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
+++.++.++.++.+|++.|.++++..+||++ + |+++|+++..+++........... .. ...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~-~~-----------~~~----- 63 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK-IK-----------TGN----- 63 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcc-cc-----------ccc-----
Confidence 4677899999999999999999999999998 4 899999999998864321100000 00 000
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.......++.++|. .+++++++++++.++++.|.+.+.+.+||++ +|+++|+||.+|++
T Consensus 64 ---------~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 64 ---------GLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred ---------cchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 00112234667776 5799999999999999999999999999998 69999999999996
No 145
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2e-11 Score=94.67 Aligned_cols=111 Identities=16% Similarity=0.267 Sum_probs=88.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++++++++.++++.|.+++++.+||+| +|+++|+++..+++++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~-------------------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL-------------------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence 577899999999999999999999999998 68999999999987653210000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
. . ..+...++.++|. +.+.++++++++.++++.|.+.+ .+||++ +++++|++|.+|++
T Consensus 56 -~----~-~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 56 -D----L-ERLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred -h----H-HHHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence 0 0 0012345777777 56889999999999999998754 589998 79999999999986
No 146
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2e-11 Score=97.19 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=95.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.++++.|.+++++++||+| +|+++|+++..+++........... ..+.....
T Consensus 1 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~ 65 (132)
T cd04636 1 KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVI 65 (132)
T ss_pred CCCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------cccccccc
Confidence 3577899999999999999999999999998 6899999999998765321100000 00000000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
... ....+.+...++.++|. +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 66 ~~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 66 FLD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred ccc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 000 12233344456888887 568899999999999999999999999999889999999999997
No 147
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.6e-11 Score=92.54 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=88.1
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++++++.++.++++.|.+++...+||+++++++|+++..+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence 46788999999999999999888889999988999999999998631
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....+++++|. ..+.++.+++++.++++.|.+++..++||++ +|+++|+++..|++
T Consensus 49 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 49 ----------DPDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred ----------CccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 00123566775 5688899999999999999999999999998 78999999999986
No 148
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.5e-11 Score=93.49 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=89.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.++++..+||++ +|+++|+++..++++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence 567899999999999999999999999998 69999999999987642210
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|. .+++++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 53 ---------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred ---------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 011224666776 5688999999999999999999999999998 69999999999986
No 149
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.33 E-value=1.3e-11 Score=108.64 Aligned_cols=145 Identities=14% Similarity=0.253 Sum_probs=115.6
Q ss_pred CEEEEEcCCCcEEEEEeHHHHHHHHHhc-cCCCcccccccccc--cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCe
Q 017600 7 DALLLTDSNALLCGILTDKDIATRVIAR-ELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGE 82 (369)
Q Consensus 7 ~~~~V~d~~~~~~Givt~~Di~~~~~~~-~~~~~~~~v~dim~--~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~ 82 (369)
.++||.... .--+|.--++.+.+.. ...-+=..|.|+|. ....++.+++++.+-.++-.+.++.++||+| ..+
T Consensus 156 ~~lPvlsts---YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~k 232 (432)
T COG4109 156 KGLPVLSTS---YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMK 232 (432)
T ss_pred cCCceEEec---ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccce
Confidence 345555422 3345555555444442 22233367999998 5788999999999999999999999999999 689
Q ss_pred EEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCc
Q 017600 83 VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162 (369)
Q Consensus 83 ~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 162 (369)
++|+++.+|++.. ....++..+|+ ++++++.+.++
T Consensus 233 vvGvVt~rDv~~~-------------------------------------------~~~t~ieKVMt--knp~tv~~~ts 267 (432)
T COG4109 233 VVGVVTMRDVLDK-------------------------------------------KPSTTIEKVMT--KNPITVRAKTS 267 (432)
T ss_pred EEEEEEehhhhcC-------------------------------------------CCCccHHHHhc--cCCeeecccch
Confidence 9999999998643 33455777888 78999999999
Q ss_pred HHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHH
Q 017600 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (369)
Q Consensus 163 l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~ 199 (369)
+..+.+.|...++..+||++ +.+++|+||++|++..+
T Consensus 268 VAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~l 305 (432)
T COG4109 268 VASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSL 305 (432)
T ss_pred HHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHH
Confidence 99999999999999999999 89999999999998443
No 150
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.8e-11 Score=94.90 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=86.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCC-CeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.++++.|.+++ ...+||.++|+++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK---------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence 5678899999999999998888 67788888899999999999875421000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCC--CcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|. .+++++.++ +++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 001234666776 457778776 7899999999999999999998 78999999999996
No 151
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.1e-11 Score=95.51 Aligned_cols=117 Identities=23% Similarity=0.359 Sum_probs=91.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++.+++++.++++.|.+.+++.+||++ +|+++|+++..+++.......... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~------------------~~----- 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN------------------GE----- 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc------------------cc-----
Confidence 577899999999999999999999999998 599999999999876532110000 00
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
. ..+.....++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 59 -~----~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 59 -E----SLTKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred -c----ccccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 0 001122345667776 5788999999999999999999999999998 58999999999996
No 152
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.7e-11 Score=93.49 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=89.9
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++++++++++++.+|++.|.+++++.+||+++|+++|+++..+++...... +
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~------ 52 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G------ 52 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c------
Confidence 357789999999999999999999999999999999999999986321100 0
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
......++.++|. ..+.++.+++++.++++.|.+.+.+++||++ +++++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0011123667776 5688899999999999999999999999998 68999999999986
No 153
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.33 E-value=4.1e-11 Score=93.01 Aligned_cols=111 Identities=25% Similarity=0.337 Sum_probs=94.2
Q ss_pred cccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCC
Q 017600 45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (369)
Q Consensus 45 dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
++|.++++++.++.++.+|...|.++++..+||++.++++|+++..|++........
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~----------------------- 59 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK----------------------- 59 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC-----------------------
Confidence 455588999999999999999999999999999998899999999999876332100
Q ss_pred CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH-cCCceEEEEe-CC-EEEEEeehHHH
Q 017600 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI 195 (369)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-~~~~~~~V~d-~~-~~~Giit~~dl 195 (369)
...++.++|. .++.++.++.++.++.+.|.+ ++.+.+||++ ++ +++|++|.+|+
T Consensus 60 ---------------~~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 60 ---------------RLLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred ---------------ccccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 0004677777 478999999999999999999 7999999999 54 99999999997
No 154
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.33 E-value=2.9e-11 Score=93.02 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=86.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++++++++++.+|++.|.++++..+||++ + |+++|+++..+++......
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 567899999999999999999999999998 5 8999999999987642100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 -----------~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 54 -----------EEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------CCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 00012334443 478899999999999999999999999998 69999999999986
No 155
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.32 E-value=2.2e-11 Score=93.94 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=89.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
+++++.+++++.++++.|.+++.+.+||+++++++|+++..+++...... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~----------------------~------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ----------------------G------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc----------------------C-------
Confidence 56788999999999999999999999999889999999999987532210 0
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
......++.++|. ..+.++++++++.++++.|.+++..++||++ +++++|++|.+|++
T Consensus 53 -------~~~~~~~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 53 -------LDPESTLVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred -------CCcCcCCHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 0001134667776 5688899999999999999999999999998 68999999999986
No 156
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2e-11 Score=96.42 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=88.5
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
.+.++++++++.+|++.|.++++..+||+| +|+++|+++..|++........... .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~ 59 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----------------------YR 59 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----------------------cc
Confidence 567899999999999999999999999998 6899999999998765321100000 00
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
......+... .....+.|. .++.++++++++.++++.|.+++.+++||++ +++++|++|..|++
T Consensus 60 ~~~~~~~~~~--~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 60 TITFKELSEK--FTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred chhhhhhhhh--ccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 0000000000 011223444 5688999999999999999999999999998 68999999999996
No 157
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=6.3e-11 Score=92.81 Aligned_cols=118 Identities=27% Similarity=0.295 Sum_probs=90.8
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
+++++++++++.++++.|.++++..+||+|+|+++|+++..++.+..........+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~----------------------- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGET----------------------- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccch-----------------------
Confidence 577899999999999999999999999999899999999999876533211000000
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.... .....++.++|. .+++++++++++.++++.|.+++...+||++ +++++|+++..|++
T Consensus 59 --~~~~--~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 59 --EKDL--ATLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred --HHHH--HHHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 0000 000113556665 5688999999999999999999999999998 68999999999996
No 158
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.32 E-value=1.2e-10 Score=112.03 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=97.8
Q ss_pred ccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHH
Q 017600 44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (369)
Q Consensus 44 ~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (369)
...|.++++++.+++++.+|+++|.+++++.+||+|+ ++++|+++..|+....
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----------------------- 159 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----------------------- 159 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----------------------
Confidence 3347789999999999999999999999999999985 7999999999985310
Q ss_pred hcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHH
Q 017600 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (369)
Q Consensus 120 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~ 198 (369)
....++.++|++...++++++++++.++++.|.+++...+||++ +++++|+||.+|+++.
T Consensus 160 -------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 160 -------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred -------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 12345888998544588999999999999999999999999998 8999999999999843
Q ss_pred H
Q 017600 199 V 199 (369)
Q Consensus 199 ~ 199 (369)
.
T Consensus 221 ~ 221 (505)
T PLN02274 221 K 221 (505)
T ss_pred h
Confidence 3
No 159
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.32 E-value=5.7e-11 Score=114.32 Aligned_cols=114 Identities=10% Similarity=0.158 Sum_probs=99.1
Q ss_pred ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017600 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (369)
Q Consensus 42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
+..+.|..+++++++++++.+|+++|.+++++.+||+++ ++++|+++.+|+...
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~---------------------- 154 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV---------------------- 154 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc----------------------
Confidence 356778889999999999999999999999999999985 799999999997521
Q ss_pred HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....+++++|++..++++++++.++.+++++|.+++...+||++ +++++|+||.+|++
T Consensus 155 --------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl 214 (495)
T PTZ00314 155 --------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK 214 (495)
T ss_pred --------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence 011345888998545799999999999999999999999999999 88999999999998
Q ss_pred H
Q 017600 197 M 197 (369)
Q Consensus 197 ~ 197 (369)
+
T Consensus 215 ~ 215 (495)
T PTZ00314 215 K 215 (495)
T ss_pred h
Confidence 3
No 160
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.32 E-value=2.4e-11 Score=93.80 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=90.2
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++.+++++.++++.|.++++..+||++ +|+++|+++..+++......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 52 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP---------------------------- 52 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc----------------------------
Confidence 3577899999999999999999999999998 58999999999987541100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeC--CEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~--~~~~Giit~~dll 196 (369)
......++.++|. .++.++++++++.++++.|.+.+.+.+||+++ ++++|++|.+|++
T Consensus 53 ---------~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 53 ---------SLYDLVVASDIMT--KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred ---------cccccEEHHHhcc--CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 0011234667776 56899999999999999999999999999986 8999999999986
No 161
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.2e-11 Score=96.21 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=85.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
+++++.+++++.+|++.|.+++.+.+||++ +|+++|+++..|+......+.... +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------------------~------ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQE------------------G------ 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHH------------------c------
Confidence 467899999999999999999999999998 689999999999875311000000 0
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEe----CCCCcHHHHHHHHHHcCCceEEEEe-C-CEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v----~~~~~l~~~~~~m~~~~~~~~~V~d-~-~~~~Giit~~dll 196 (369)
.......+++++|.+....+.+ .+++++.++++.|.+++.+.+||++ + |+++|+||.+|++
T Consensus 58 -------~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 58 -------GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred -------CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence 0001123466777631112233 2688999999999999999999999 5 7999999999996
No 162
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=4.9e-11 Score=94.34 Aligned_cols=121 Identities=30% Similarity=0.366 Sum_probs=91.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+|++.|.+.+++.+||++ +|+++|+++..+++............
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~----------------------- 58 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKART----------------------- 58 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcch-----------------------
Confidence 567889999999999999999999999998 69999999999987643211000000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll 196 (369)
..... -.......++.++|. .++++++++.++.++++.|.+.+...+||++ +++++|+||.+|++
T Consensus 59 ~~~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 59 GDRSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred hhhhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 00000 001122345777886 5688999999999999999999999999985 48999999999986
No 163
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.30 E-value=3.3e-11 Score=96.00 Aligned_cols=98 Identities=30% Similarity=0.301 Sum_probs=78.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCcc----------cccccccc------
Q 017600 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----------STLVEKVM------ 215 (369)
Q Consensus 153 ~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~----------~~~v~~~m------ 215 (369)
++.++++++++.+|++.|.+.+.+++||+| +|+++|++|.+|+++.......... ...+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 578899999999999999999999999999 7999999999999844432221100 01133454
Q ss_pred ---ccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCC
Q 017600 216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250 (369)
Q Consensus 216 ---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g 250 (369)
.++++++++++++.+|++.|.+++.+.+||+|+.+
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 46788999999999999999999999999999654
No 164
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=6.3e-11 Score=95.79 Aligned_cols=140 Identities=18% Similarity=0.228 Sum_probs=94.6
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHH-HHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME-RAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++++++++.++++.|.++++..+||+++++++|+++..++++....... ................. .+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 75 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR-----EFIN 75 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch-----heee
Confidence 46788999999999999999999999999988999999999998765322110 00000000000000000 0000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......... .....++.++|. .++.++++++++.++++.|.+.+.+.+||++.++++|+++.+|++
T Consensus 76 ~~~~~~~~~-~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 76 WEETKRALT-DAGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred hHHHHHHHH-HHhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 000001111 123345778886 578999999999999999999999999999888999999999986
No 165
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.30 E-value=1.2e-10 Score=110.89 Aligned_cols=140 Identities=16% Similarity=0.282 Sum_probs=114.1
Q ss_pred EEEEeHHHHHHHHHhccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHH
Q 017600 19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLY 94 (369)
Q Consensus 19 ~Givt~~Di~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~ 94 (369)
.|.++..+ +.++.+-.++.+.+|+++|++ ++.+++.+.++.++.+.+.+++++++||++ .+.++|++..+|++.
T Consensus 186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 57777777 466777789999999999995 678899999999999999999999999998 388999999999987
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC
Q 017600 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~ 174 (369)
....... .......+ .+++.++++.++.++++.|++.+
T Consensus 264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~ 301 (429)
T COG1253 264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER 301 (429)
T ss_pred HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence 6332100 00011111 25899999999999999999999
Q ss_pred CceEEEEe-CCEEEEEeehHHHHHHHHhc
Q 017600 175 LSSAVVTV-ENKPRGILTSKDILMRVISQ 202 (369)
Q Consensus 175 ~~~~~V~d-~~~~~Giit~~dll~~~~~~ 202 (369)
.+...|+| .|.+.|++|..|++..+..+
T Consensus 302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 302 THMAIVVDEYGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred CeEEEEEEcCCCeEEEeEHHHHHHHHhCC
Confidence 99999999 79999999999999666654
No 166
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.30 E-value=6.1e-11 Score=91.81 Aligned_cols=104 Identities=15% Similarity=0.251 Sum_probs=85.0
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
.+++++.+++++.++++.|.++++..+||+|+ |+++|+++..+++...
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~---------------------------- 53 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT---------------------------- 53 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh----------------------------
Confidence 35678899999999999999999999999984 8999999988875320
Q ss_pred CCChhhHHHHHHHHhCCCCccccccCCCceeEe--CCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v--~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....+++++|.+ ...++ ++++++.++++.|.+++...+||++ +++++|++|.+|++
T Consensus 54 --------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 --------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred --------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 011236677763 44455 4499999999999999999999998 78999999999986
No 167
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.30 E-value=3.5e-11 Score=92.93 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=89.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+.+.+.+||++ +|+++|+++..+++.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------- 54 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------- 54 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----------------------------
Confidence 456789999999999999888899999998 689999999988875422100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|. .++.++++++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus 55 ---------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 55 ---------DILTLPVADVMT--RNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred ---------ccccCCHHHhhc--cCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence 011234677776 4678899999999999999999999999998 89999999999996
No 168
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=3.5e-11 Score=115.07 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=98.4
Q ss_pred ccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-C---CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 017600 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (369)
Q Consensus 42 ~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~---~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~ 117 (369)
+..+.|.++++++++++++.++++.|.+++++++||+| + ++++|+++.+|++...
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 45778889999999999999999999999999999998 4 5999999999986320
Q ss_pred HHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 118 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....+++++|.+ .+++++++++++.++++.|.+++.+.+||+| +|+++|++|.+|++
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 012357778863 3799999999999999999999999999999 89999999999998
Q ss_pred HH
Q 017600 197 MR 198 (369)
Q Consensus 197 ~~ 198 (369)
+.
T Consensus 198 ~~ 199 (450)
T TIGR01302 198 KR 199 (450)
T ss_pred hc
Confidence 43
No 169
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=4.2e-11 Score=93.80 Aligned_cols=118 Identities=23% Similarity=0.401 Sum_probs=91.2
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
++++++.+++++.++++.|.+++++.+||+| +|+++|+++..+++.........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~------------------------- 55 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV------------------------- 55 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence 3577899999999999999999999999998 69999999999987541100000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.. ..........++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 56 -~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 56 -ED--QQRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred -cc--hhhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 00 00000112334667776 5688999999999999999999999999998 78999999999986
No 170
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.28 E-value=8.4e-11 Score=91.86 Aligned_cols=117 Identities=26% Similarity=0.360 Sum_probs=91.0
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.+|++.|.+.+++.+||+| +|+++|+++..+++..........
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 56 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL------------------------- 56 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc-------------------------
Confidence 567889999999999999999999999998 599999999999865421110000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
..... ......++.++|. ..+.++++++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus 57 --~~~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 57 --SEHEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred --hhhhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 00000 1122345667776 568899999999999999999999999999889999999999986
No 171
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.27 E-value=1.1e-11 Score=110.87 Aligned_cols=107 Identities=32% Similarity=0.398 Sum_probs=97.3
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCceEEEEe----CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCC
Q 017600 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (369)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d----~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~ 227 (369)
.++++++|+.++.++++....+++..+||++ +.+++|+||.+|+ .++.+ ....++++|++.+++.+.+.+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~ 189 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGIT 189 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhccccccccccccc
Confidence 4688899999999999999999999999996 5789999999999 45422 267899999999999999999
Q ss_pred HHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
+.++.+.+.+++...+||||++|+++-++++.||.+.
T Consensus 190 l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 190 LKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 9999999999999999999999999999999999983
No 172
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.27 E-value=9e-11 Score=89.51 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=84.6
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCC
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 125 (369)
....+.+++++.++.+.|.++++..+||+++ |+++|+++..++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~---------------------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK---------------------------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence 4567899999999999999999999999985 89999999999865410
Q ss_pred CChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
. +|. .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 55 -----------~---------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 55 -----------N---------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred -----------H---------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 0 444 468899999999999999999999999999999999999999996
No 173
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.26 E-value=5.7e-11 Score=91.11 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=85.4
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+++.++.+++++.++++.|.++++..+||+| +|+++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 4677899999999999999999999999998 58999999988875310
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCC-CCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. ..+..+.+ ++++.++++.|.+.+.+.+||++ +++++|++|.+|++
T Consensus 51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 01224566665 34555555 99999999999999999999998 79999999999986
No 174
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.26 E-value=3.1e-11 Score=108.32 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=94.6
Q ss_pred cccccccccC-CeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHH
Q 017600 41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (369)
Q Consensus 41 ~~v~dim~~~-~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (369)
.+++++|.++ +.++.+++++.++++.|.+.+++.+||+| +|+++|+++..|++.....
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 6789999988 99999999999999999999999999998 7999999999998753110
Q ss_pred HhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEee
Q 017600 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 191 (369)
Q Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit 191 (369)
......+++++|. .+++++++++++.++++.|.+++...+||++ +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 0011245778887 5688999999999999999999999999998 789999985
No 175
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=6.8e-11 Score=90.71 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=81.7
Q ss_pred EeCCCcHHHHHHHHHhCC-----CeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 54 VLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 54 v~~~~~l~~a~~~m~~~~-----~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
+.+++++.++++.|.+++ +..+||+| +|+++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~-------------------------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------------------------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence 578899999999998877 47899998 6899999998887531
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....++.++|. .++.++.+++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus 50 -----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 50 -----------DPDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred -----------CCcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 00123555665 4688999999999999999999999999998 79999999999997
No 176
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=2.1e-10 Score=87.51 Aligned_cols=102 Identities=26% Similarity=0.353 Sum_probs=85.2
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+++..|.+.++..+||++ +++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 567889999999999999999999999998 58999999999886420
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
...++.++|. .++.++++++++.++++.|.+.+...+||+++++++|++|.+|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0011334454 468889999999999999999999999999978999999999986
No 177
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.22 E-value=1.2e-10 Score=112.52 Aligned_cols=118 Identities=25% Similarity=0.343 Sum_probs=96.3
Q ss_pred CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 017600 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (369)
Q Consensus 38 ~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~ 116 (369)
+...+++++|.+++.++.+++++.++++.|.++++..+||+| +++++|+++..|++......
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 394 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG----------------- 394 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence 556789999999999999999999999999999999999998 68999999999987642210
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
......++.++|. .++.++++++++.++++.|.+++ ..+|+++++++|+||.+|++
T Consensus 395 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll 450 (454)
T TIGR01137 395 --------------------KANPDDAVSKVMS--KKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL 450 (454)
T ss_pred --------------------CCCcCCCHHHhcC--CCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence 0011234777886 56889999999999999998754 34555589999999999998
No 178
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.22 E-value=9.4e-11 Score=110.14 Aligned_cols=116 Identities=19% Similarity=0.292 Sum_probs=103.7
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017600 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (369)
Q Consensus 141 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~ 214 (369)
..+++.+|+ .++++++++.|+.+++..+++. ....+.|+| ++++.|+++.++++ ....+.++.++
T Consensus 131 e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~i 201 (451)
T COG2239 131 EDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKDL 201 (451)
T ss_pred hhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHHH
Confidence 457889999 7899999999999999999854 356788999 88899999999997 11236789999
Q ss_pred cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
|.+.++++.++++.+++.+.|.+++.-.+||||++++++|+||..|++..+
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765
No 179
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.22 E-value=2.4e-10 Score=87.53 Aligned_cols=106 Identities=24% Similarity=0.312 Sum_probs=84.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (369)
+++++++++++.++++.|.+++++.+||+++|+++|+++..++.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK----------------------------- 52 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccc-----------------------------
Confidence 567889999999999999999999999998899999999999876522100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 130 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.....++.++|. .++.++++++++.++.+.|.+ .. .+||++ +++++|++|.+|++
T Consensus 53 --------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 53 --------AKFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred --------cccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence 000233556665 568889999999999999988 33 467777 79999999999996
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.20 E-value=4.9e-11 Score=80.06 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=53.0
Q ss_pred cccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHH
Q 017600 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (369)
Q Consensus 211 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~ 266 (369)
++++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999764
No 181
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=5.7e-10 Score=86.89 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=86.9
Q ss_pred CCeEEeCCCcHHHHHHHHHhCC-CeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|...+ +..+||+++|+++|+++..+++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~---------------------------- 53 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY---------------------------- 53 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence 5667899999999999998877 89999998899999999999875422100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCc---eEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~---~~~V~d-~~~~~Giit~~dll 196 (369)
........++.++|. .++..+++++++.++++.|.+++.. ..||++ +|+++|++|..|++
T Consensus 54 ------~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 54 ------GRALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred ------hHHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 001122345778887 5788999999999999999988753 345666 89999999999986
No 182
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.16 E-value=9.1e-10 Score=84.22 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=87.4
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++++++++.++++.|.+++...+||++ +++++|+++..+++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-------------------------- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence 567889999999999999999999999998 58999999999987653211000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
....+.++|. .++..++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++
T Consensus 56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 0000334454 5688899999999999999999999999999 79999999999986
No 183
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.14 E-value=5.9e-10 Score=99.28 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=106.4
Q ss_pred hccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhh
Q 017600 33 ARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGK 108 (369)
Q Consensus 33 ~~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~ 108 (369)
..-.++++++|+|+|.+ ++..++.+++..+.++.+....+.++|++.+ +.++|++..+++++...+.-..
T Consensus 192 ~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~------ 265 (423)
T COG4536 192 LGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF------ 265 (423)
T ss_pred hcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc------
Confidence 34568999999999985 6789999999999999999999999999963 6799999999999875432100
Q ss_pred HHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEE
Q 017600 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPR 187 (369)
Q Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~ 187 (369)
..+ +++.--.++.+++.++++.+-+..|.+++-+-..|+| .|.+.
T Consensus 266 ----------------------~k~------------d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~ 311 (423)
T COG4536 266 ----------------------TKE------------DILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ 311 (423)
T ss_pred ----------------------cHh------------HHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence 001 1111114699999999999999999999888888999 89999
Q ss_pred EEeehHHHHHHHHhcCC
Q 017600 188 GILTSKDILMRVISQNL 204 (369)
Q Consensus 188 Giit~~dll~~~~~~~~ 204 (369)
|++|..|++........
T Consensus 312 GLVTLEDIlEEIVGdft 328 (423)
T COG4536 312 GLVTLEDILEEIVGDFT 328 (423)
T ss_pred eeeeHHHHHHHHhcccc
Confidence 99999999977765543
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.05 E-value=1.1e-08 Score=94.86 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=91.9
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHH
Q 017600 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~ 232 (369)
.....++.+..++++.|...+...+.|++ ++++.|.++.+++. ..... ...+.+.+.....++++++++.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKK-----AQGLQDVLIDDIYTVDAGTLLRETV 325 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhc-----CCchhhhhccCCceECCCCcHHHHH
Confidence 34556777899999999999999999998 89999999999985 44432 2357777877888999999999999
Q ss_pred HHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
..|.+++.. +||+|++|+++|+||..++++++..
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 999999998 9999999999999999999997754
No 185
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.00 E-value=2.3e-09 Score=100.89 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=102.2
Q ss_pred HhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhC-----CCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHh
Q 017600 32 IARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAE 105 (369)
Q Consensus 32 ~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~-----~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~ 105 (369)
+.......+-++..+|+.+.+++.++.|+.+++..+++. .+..+.|+| +++++|+++.++++..
T Consensus 123 v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a---------- 192 (451)
T COG2239 123 VRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA---------- 192 (451)
T ss_pred HHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------
Confidence 334456667889999999999999999999999999853 467889999 7889999999998743
Q ss_pred hhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CC
Q 017600 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (369)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~ 184 (369)
.....++++|. ++++++.++++.+++.+.+.+++.-.+||+| ++
T Consensus 193 ---------------------------------~~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~ 237 (451)
T COG2239 193 ---------------------------------EPDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDN 237 (451)
T ss_pred ---------------------------------CcHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECCCC
Confidence 01123567777 4599999999999999999999999999999 89
Q ss_pred EEEEEeehHHHH
Q 017600 185 KPRGILTSKDIL 196 (369)
Q Consensus 185 ~~~Giit~~dll 196 (369)
+++|++|..|++
T Consensus 238 ~LiG~itiDDii 249 (451)
T COG2239 238 RLIGIITIDDII 249 (451)
T ss_pred ceeeeeeHHHHH
Confidence 999999999998
No 186
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.99 E-value=4.6e-09 Score=83.62 Aligned_cols=114 Identities=15% Similarity=-0.008 Sum_probs=77.1
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCCh
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (369)
++.++.+++++.+|++.|.++++..+||+| +|+++|+++..|+++......... ..... ..++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~---~~~~~-------~~~~------ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTR---VQPED-------ETKQ------ 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccc---cccch-------hhcc------
Confidence 578899999999999999999999999998 699999999999887643210000 00000 0000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe
Q 017600 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 182 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d 182 (369)
.....+.+.+....+.+.|. .+++++.+++++.+|++.|.+++.+++||++
T Consensus 66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 00000111111111223343 4688999999999999999999999999998
No 187
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.98 E-value=1.5e-09 Score=72.68 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=50.8
Q ss_pred cccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHHH
Q 017600 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA 96 (369)
Q Consensus 43 v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~~ 96 (369)
|+++|.++++++++++++.++++.|.+++++++||+| +|+++|+++..|++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999999999999999999999999999999997 79999999999998764
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=4.2e-08 Score=92.19 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=89.6
Q ss_pred eCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHH
Q 017600 157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM 235 (369)
Q Consensus 157 v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~ 235 (369)
..++.+..+++..|...+.++++|+| ++++.|+++.+++. +.... ...+.+.+.....++++++++.+++..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPLAVDAQTPLSELLSHV 363 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCceeCCCCCHHHHHHHH
Confidence 44677889999999999999999999 89999999999996 44332 2356777777889999999999999999
Q ss_pred HhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 236 ~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
.+.... +||||++|+++|+||..++++++.+
T Consensus 364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred HhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 998776 9999999999999999999997743
No 189
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.2e-08 Score=85.27 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=103.3
Q ss_pred ccCCCccccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhH
Q 017600 34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKA 109 (369)
Q Consensus 34 ~~~~~~~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~ 109 (369)
.-.++.+.+|+|+|.+ ..++++.+.++.+.+..+.+..++++||+. .+.+.|++-.+|++..+...
T Consensus 60 Gvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~---------- 129 (293)
T COG4535 60 GVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD---------- 129 (293)
T ss_pred HHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC----------
Confidence 3446778899999985 678999999999999999999999999996 47899999999998762211
Q ss_pred HHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEE
Q 017600 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (369)
Q Consensus 110 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~G 188 (369)
.....+.++.+ +.+.++++..+...++.++..+.+...|+| -|.+.|
T Consensus 130 -----------------------------~~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG 177 (293)
T COG4535 130 -----------------------------AEPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG 177 (293)
T ss_pred -----------------------------cccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence 00112444554 488899999999999999999999999999 788999
Q ss_pred EeehHHHHHHHHhc
Q 017600 189 ILTSKDILMRVISQ 202 (369)
Q Consensus 189 iit~~dll~~~~~~ 202 (369)
++|..|++......
T Consensus 178 LVTIEDiLEqIVGd 191 (293)
T COG4535 178 LVTIEDILEQIVGD 191 (293)
T ss_pred eEEHHHHHHHHhcc
Confidence 99999999666544
No 190
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.1e-08 Score=96.79 Aligned_cols=125 Identities=13% Similarity=0.200 Sum_probs=104.6
Q ss_pred HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe---C---CEEEEEeehHHHHHHHHhcCCCc-----
Q 017600 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA----- 206 (369)
Q Consensus 138 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d---~---~~~~Giit~~dll~~~~~~~~~~----- 206 (369)
.+.+.+++++|+ +++++++..+.+....+.+....++.+||+| . +++.|+|-+..++ .++.+....
T Consensus 578 ~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 578 YMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRS 654 (762)
T ss_pred HhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcc
Confidence 345567899999 6899999999999999999999999999998 2 4688999999886 443321100
Q ss_pred ---------------------------------cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEE
Q 017600 207 ---------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253 (369)
Q Consensus 207 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~ 253 (369)
.-..+..+|++.|+++++++++..++.+|++-+.+++.||+..++.+
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~ 734 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV 734 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence 01456678889999999999999999999999999999999999999
Q ss_pred EEEeHHHHHHHH
Q 017600 254 DVVDVIHITHAA 265 (369)
Q Consensus 254 Givt~~di~~~~ 265 (369)
|++|++|+..+-
T Consensus 735 gilTR~D~~~~~ 746 (762)
T KOG0474|consen 735 GILTRKDLARYR 746 (762)
T ss_pred EEEehhhhhhHH
Confidence 999999999654
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.62 E-value=7.3e-08 Score=91.24 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=105.3
Q ss_pred cccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC------CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHH
Q 017600 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAIAA 112 (369)
Q Consensus 39 ~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~------~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~ 112 (369)
.+++++|+|++++++++.-+.+....+.+.++.++.+||+|+ +++.|++-+..++.-+.++........+....
T Consensus 580 r~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~ 659 (762)
T KOG0474|consen 580 RNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLP 659 (762)
T ss_pred hhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcc
Confidence 357899999999999999999999999999999999999983 46788887777665544332221110000000
Q ss_pred HHHh-HHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEe
Q 017600 113 AVEG-VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL 190 (369)
Q Consensus 113 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Gii 190 (369)
.... -...+....+...+..-.-.+.-....+..+|. +.+.++++++++..+..+++.-+.+++.|+. ..+.+|++
T Consensus 660 ~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gil 737 (762)
T KOG0474|consen 660 VRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGIL 737 (762)
T ss_pred hhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEE
Confidence 0000 000000111111111111122223345677887 5799999999999999999999999999998 77789999
Q ss_pred ehHHHH
Q 017600 191 TSKDIL 196 (369)
Q Consensus 191 t~~dll 196 (369)
|++|+.
T Consensus 738 TR~D~~ 743 (762)
T KOG0474|consen 738 TRKDLA 743 (762)
T ss_pred ehhhhh
Confidence 999997
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=2.5e-06 Score=80.37 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=104.4
Q ss_pred cCEEEEEcCCCcEEEEEeHHHHHHH-------HHhccCCCc-ccccccccccCC---eEEeCCCcHHHHHHHHHhCCCeE
Q 017600 6 VDALLLTDSNALLCGILTDKDIATR-------VIARELNLE-ETPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFRH 74 (369)
Q Consensus 6 ~~~~~V~d~~~~~~Givt~~Di~~~-------~~~~~~~~~-~~~v~dim~~~~---i~v~~~~~l~~a~~~m~~~~~~~ 74 (369)
.+.+.+.+ +|+++..-+..++... .+....+.. -.++.++|.+.+ +...++.+..+++..|..++...
T Consensus 232 ~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (400)
T PRK10070 232 GDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREY 310 (400)
T ss_pred CCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCce
Confidence 35566665 5666655556665421 111111221 246677775433 23346678999999999999999
Q ss_pred eeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCc
Q 017600 75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153 (369)
Q Consensus 75 lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 153 (369)
++|+| +++++|+++..++....- ....+.+.+. ..
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~ 346 (400)
T PRK10070 311 GYVIERGNKFVGAVSIDSLKTALT------------------------------------------QQQGLDAALI--DA 346 (400)
T ss_pred EEEEcCCCcEEEEEeHHHHHhhhh------------------------------------------cCCchhhhhc--cC
Confidence 99998 799999999998754310 0112333443 45
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHh
Q 017600 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS 201 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~ 201 (369)
..++++++++.+++..+.+.... +||+| +|+++|+|+..++++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 78899999999999999987766 99999 8999999999999844433
No 193
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.57 E-value=3.1e-06 Score=78.72 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=104.3
Q ss_pred cCEEEEEcCCCcEEEEEeHHHHHHHH-------HhccCCC-cccccccc---cccCCeEEeCCCcHHHHHHHHHhCCCeE
Q 017600 6 VDALLLTDSNALLCGILTDKDIATRV-------IARELNL-EETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRH 74 (369)
Q Consensus 6 ~~~~~V~d~~~~~~Givt~~Di~~~~-------~~~~~~~-~~~~v~di---m~~~~i~v~~~~~l~~a~~~m~~~~~~~ 74 (369)
.+.+.+.+ +|+++..-|..++...- +...... ......++ |........++.+..+++..|...+...
T Consensus 197 ~drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (363)
T TIGR01186 197 GDRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDS 275 (363)
T ss_pred CCEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCce
Confidence 45666775 67888877877775321 1111111 11222233 3333345667778999999999999999
Q ss_pred eeEee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCc
Q 017600 75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153 (369)
Q Consensus 75 lpVvd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 153 (369)
+.|+| ++++.|.++..++..+.- ....+.+.+. ..
T Consensus 276 ~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~ 311 (363)
T TIGR01186 276 LYVVDRQNKLVGVVDVESIKQARK------------------------------------------KAQGLQDVLI--DD 311 (363)
T ss_pred EEEEcCCCCEEEEEeHHHHHHHhh------------------------------------------cCCchhhhhc--cC
Confidence 99998 799999999887654310 0112344444 46
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017600 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~ 200 (369)
+.++++++++.+++..|.+++.+ +||++ +|+++|+||..+++ ..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~-~~~ 357 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLV-DAL 357 (363)
T ss_pred CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHH-HHH
Confidence 78899999999999999999998 99999 89999999999998 444
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.37 E-value=4.3e-06 Score=73.88 Aligned_cols=165 Identities=17% Similarity=0.260 Sum_probs=115.2
Q ss_pred ccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCC
Q 017600 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (369)
Q Consensus 48 ~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (369)
.+.+++++.+ +.||+++ -+++.++.+|+++-+-|..+++..-
T Consensus 215 ~KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~P------------------------------- 256 (386)
T COG4175 215 KKTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNP------------------------------- 256 (386)
T ss_pred CCeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcCc-------------------------------
Confidence 3456666554 7777765 3567888999999999999987541
Q ss_pred hhhHHHHHHHH---hCCCCccccccCCCceeEe-CCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhc
Q 017600 128 PNTFIETLRER---MFRPSLSTIIPEKSKVVTI-SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ 202 (369)
Q Consensus 128 ~~~~~~~~~~~---~~~~~v~~im~~~~~~~~v-~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~ 202 (369)
.+++...+-+. ..-.+..++|.+ .+..+. .+...-..++..+.......+.+++ +++.+|+++..+.. ..
T Consensus 257 AndYV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~--- 331 (386)
T COG4175 257 ANDYVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLV-KA--- 331 (386)
T ss_pred cHHHHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchh-cc---
Confidence 11222222221 112346788874 222222 2233345677777777777777777 77799999999885 11
Q ss_pred CCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHH
Q 017600 203 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (369)
Q Consensus 203 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~ 267 (369)
.+..++.+++.++++.+.+....+.+.. ++|+|++|+++|+++...+++++.+
T Consensus 332 -----------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 -----------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred -----------cccccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHhc
Confidence 3446778999999999999999988774 7899999999999999999987653
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.35 E-value=9e-07 Score=68.28 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=51.4
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 209 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5688999889999999999999999999999999999999999999999999864
No 196
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.31 E-value=1.6e-06 Score=78.37 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=89.7
Q ss_pred cCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCC
Q 017600 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (369)
Q Consensus 49 ~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
.+++++.|+.++.++++...++++..+||.++ .+++|+|+.+|+-..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~----------------------------- 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL----------------------------- 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence 47788999999999999999999999999974 689999999986321
Q ss_pred CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHH
Q 017600 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (369)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll 196 (369)
.-....+.++|++ +.++.+.+.++.++-+++.+.+...+||++ +|+++.++++.|+.
T Consensus 167 -------------~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 167 -------------EDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM 224 (503)
T ss_pred -------------hcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence 1123447889995 458899999999999999999999999999 99999999999996
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.17 E-value=3.5e-06 Score=64.97 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=49.7
Q ss_pred cccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHH
Q 017600 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL 93 (369)
Q Consensus 41 ~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil 93 (369)
.+++++|.+++.++.+++++.++++.|.+++++.+||+| +|+++|+++..++.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 679999999999999999999999999999999999998 68999999999875
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.07 E-value=1.4e-05 Score=50.58 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=42.7
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
++.++++++++.++++.|.+.+.+.+||+++++++.|+++..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 35678999999999999999999999999988999999999999864
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.00011 Score=70.38 Aligned_cols=111 Identities=11% Similarity=0.181 Sum_probs=88.9
Q ss_pred ceeEeCCC-CcHHHHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCC----------------------c
Q 017600 153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----------------------A 206 (369)
Q Consensus 153 ~~~~v~~~-~~l~~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~----------------------~ 206 (369)
....++.+ .++.+....|.++.++.+||+- .++++|++.++|+...+...... .
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP 636 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence 35555554 8999999999999999999874 67899999999997554422100 0
Q ss_pred cccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 207 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
.....+++|...|.++...++..-+++++++-+.+...|. ++|++.|+||.+|+++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 1234678888899999999999999999999999887665 68999999999999974
No 200
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.74 E-value=0.00053 Score=64.29 Aligned_cols=83 Identities=22% Similarity=0.187 Sum_probs=64.3
Q ss_pred cCCceEEEEeCCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcE
Q 017600 173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252 (369)
Q Consensus 173 ~~~~~~~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~ 252 (369)
.+.+++.|++. |+++..+.. .+..... ...+.+ +.....++++++++.+++..+.+.+.. ++|+|+ |++
T Consensus 298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~ 366 (382)
T TIGR03415 298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRI 366 (382)
T ss_pred cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeE
Confidence 77888888876 788877764 4333111 234555 556788999999999999999988765 788886 999
Q ss_pred EEEEeHHHHHHHHH
Q 017600 253 VDVVDVIHITHAAV 266 (369)
Q Consensus 253 ~Givt~~di~~~~~ 266 (369)
+|+|+..++++++.
T Consensus 367 ~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 367 VGVIGDDNIYHALL 380 (382)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999998765
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00021 Score=68.47 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=89.6
Q ss_pred CeEEeC-CCcHHHHHHHHHhCCCeEeeEe-e--CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCC
Q 017600 51 PTFVLS-DTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (369)
Q Consensus 51 ~i~v~~-~~~l~~a~~~m~~~~~~~lpVv-d--~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (369)
+..+.. ++++.+...+|.+..++.+||+ + ..+++|+++.+++...+........ ....+.- .+.
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~-----------~~~~~~~-~f~ 625 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQS-----------FIVTTSI-YFN 625 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccc-----------cceeccc-ccC
Confidence 455544 4899999999999999999998 3 4789999999998876542211110 0000000 000
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH
Q 017600 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll 196 (369)
.+.. ......-.....+++|. ..+.++...++.+-+++++++-+.+.+.|..+|++.|+||.+|++
T Consensus 626 ~~~~--~~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l 691 (696)
T KOG0475|consen 626 DPSP--SAVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL 691 (696)
T ss_pred CCCc--cccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence 0000 00001112334677787 568899999999999999999999999998899999999999998
No 202
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.61 E-value=0.00021 Score=44.84 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=40.7
Q ss_pred CCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHH
Q 017600 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD 95 (369)
Q Consensus 50 ~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~ 95 (369)
++.++.+++++.++++.|.+++++.+||++ +++++|+++..+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 356789999999999999999999999998 5899999999988653
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.30 E-value=0.0041 Score=58.39 Aligned_cols=139 Identities=9% Similarity=0.037 Sum_probs=85.8
Q ss_pred cCEEEEEcCCCcEEEEEeHHHHHH-------HHHhccCC-CcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeE
Q 017600 6 VDALLLTDSNALLCGILTDKDIAT-------RVIARELN-LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77 (369)
Q Consensus 6 ~~~~~V~d~~~~~~Givt~~Di~~-------~~~~~~~~-~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpV 77 (369)
.+.+.+.+ +|+++-.-+..+++. +.+....+ ..-.++.++|.+.......+.+ .|++ +++...+.|
T Consensus 232 ~DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~---~~~~~~~~~ 305 (382)
T TIGR03415 232 GNRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVS---DRRDTWLFT 305 (382)
T ss_pred CCEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhh---hcccceeEe
Confidence 45666665 677777767777642 11112222 2234778899433333333323 4433 378888999
Q ss_pred eeCCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEe
Q 017600 78 VENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI 157 (369)
Q Consensus 78 vd~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v 157 (369)
+|+ |+++..+.... ... ....++.+ +. ....++
T Consensus 306 ~~~----~~~~~~~~~~~-~~~---------------------------------------~~~~~~~~-~~--~~~~~~ 338 (382)
T TIGR03415 306 IDK----QVRRRDAKLPV-QAW---------------------------------------AAEQEVES-LE--AAPTVI 338 (382)
T ss_pred ecc----ceecccchHhH-hhc---------------------------------------ccccchhh-hc--ccCccc
Confidence 987 67765553321 000 00111223 22 457889
Q ss_pred CCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHHH
Q 017600 158 SPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (369)
Q Consensus 158 ~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~~ 198 (369)
++++++.+++..+.+.++. ++|+++|+++|+|+..+++..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHA 378 (382)
T ss_pred CCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHH
Confidence 9999999999998887765 777788999999999999833
No 204
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=97.26 E-value=0.00042 Score=67.02 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=102.6
Q ss_pred hCCCCccccccCCCceeEeCCCCcHH-HHHHHHHHcCCceEEEEe---CCEEEEEeehHHHHHHHHhcCCCccccccccc
Q 017600 139 MFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (369)
Q Consensus 139 ~~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~V~d---~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~ 214 (369)
+....++++|+|..++..++.+..+. +......+.+++++||.+ ...+.|.+....+ ++..........++...
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~ 278 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSES 278 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhh
Confidence 44455899999988899999888887 555566689999999998 2334444444444 44433334446788888
Q ss_pred cccCCceecCCCCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHHHHHHHhcCCCCCc
Q 017600 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSN 276 (369)
Q Consensus 215 m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~~~~~~~~~~~~~~ 276 (369)
+......+++++++.+.++.|++.+.|.+.|.. ...-.|+++..|+ ++.+.++.++.+..
T Consensus 279 ~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~d~~ 338 (498)
T KOG2118|consen 279 ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEEDKE 338 (498)
T ss_pred hccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceeccccccc
Confidence 888999999999999999999999998887776 6678999999999 77777777665533
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0029 Score=62.13 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEeeC---CeEEEEEehHHHHHHHHHH
Q 017600 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIAR 99 (369)
Q Consensus 40 ~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~vGiv~~~dil~~~~~~ 99 (369)
.+.|.++|.+++.++..++|..|.-+.+..+.++.+|++|+ -.++|.|.++.+...+-.+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 56799999999999999999999999888877999999983 4699999988887665543
No 206
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=96.88 E-value=0.00059 Score=48.97 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=38.6
Q ss_pred HHhhcCCCCCCCCccccccccccccCCCCccc--cccCCCCCCCCCCceeEEEEcCC-CceEEee
Q 017600 289 DSAMALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPSPSPGVPSAFAFKVQDNK-GLMHRFT 350 (369)
Q Consensus 289 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~ 350 (369)
++.+.+..++++++|++|++...++++|..|+ .+.++++. |+|.+++ +++.+.+
T Consensus 20 ~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~--------~~V~~~~~~rI~~V~ 76 (81)
T PF03471_consen 20 NELLGLDLPEEDYDTLGGLILEQLGRIPEVGERVEIELENYE--------FEVLEMDGRRIRKVR 76 (81)
T ss_dssp HHHHTS-TTTTTTSBHHHHHHHHHTSS--TTSEEEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred HHHHCcCCCccchhhHHHHHHHHcCCCCCCCeEEEEEcCCEE--------EEEEEeeCCEEEEEE
Confidence 34444555666789999999999999999999 55555888 9999996 4554443
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.25 E-value=0.033 Score=48.46 Aligned_cols=97 Identities=20% Similarity=0.076 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHH--------HHHHhcCCC----ccccccccccccCC----ceecCC
Q 017600 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLP----ADSTLVEKVMTPNP----ECATID 225 (369)
Q Consensus 162 ~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll--------~~~~~~~~~----~~~~~v~~~m~~~~----~~v~~~ 225 (369)
.+.||+++- +++.|.++|+++-+=+..+++ ..++..... .....+.+.|.... -.+...
T Consensus 195 DidEA~kLa-----dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (309)
T COG1125 195 DIDEALKLA-----DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEG 269 (309)
T ss_pred CHHHHHhhh-----ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccc
Confidence 355666542 467888888999888877766 333333211 11233444443322 233445
Q ss_pred CCHHHHHHHHHhCCCceeeEEcCCCcEEEEEeHHHHHH
Q 017600 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (369)
Q Consensus 226 ~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Givt~~di~~ 263 (369)
....+++..+...+...+||+|++|+++|.||..+++.
T Consensus 270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 56667888899999999999999999999999999986
No 208
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.52 E-value=0.016 Score=41.57 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.4
Q ss_pred eeEEEEcCCCceEEeecC-CCChHHHHHhhccc
Q 017600 335 FAFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE 366 (369)
Q Consensus 335 ~~~~v~~~~g~~~~~~~g-~~~~~~~~~~~~~~ 366 (369)
|+||..+..|++|||+++ .-|+.+++..|.++
T Consensus 1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R 33 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQR 33 (86)
T ss_pred CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 469999999999999998 99999999887653
No 209
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.48 E-value=0.084 Score=47.43 Aligned_cols=135 Identities=11% Similarity=0.148 Sum_probs=93.3
Q ss_pred EEEEcCCCcEEEEEeHHHHHH--------HHHhccCCCc-cccccccccc--CCeEEeCCCcHHHHHHHHHhCCCeEeeE
Q 017600 9 LLLTDSNALLCGILTDKDIAT--------RVIARELNLE-ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPV 77 (369)
Q Consensus 9 ~~V~d~~~~~~Givt~~Di~~--------~~~~~~~~~~-~~~v~dim~~--~~i~v~~~~~l~~a~~~m~~~~~~~lpV 77 (369)
+.+. ++|+++-+=|..+|+. ..+ .+.+.. -.++.++|.. ..+.-.+...-..++..+.+.....+.+
T Consensus 235 Iaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv-~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 312 (386)
T COG4175 235 IAIM-KDGEIVQVGTPEEILLNPANDYVRDFV-RNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYA 312 (386)
T ss_pred EEEe-cCCeEEEeCCHHHHHcCccHHHHHHHH-hcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHH
Confidence 3344 4788998889888873 112 222322 3478888873 2222233444567888888887777777
Q ss_pred ee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeE
Q 017600 78 VE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156 (369)
Q Consensus 78 vd-~~~~vGiv~~~dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~ 156 (369)
++ +++.+|+++..+.... .+. +.+.+
T Consensus 313 ~~~~~~~~g~v~~~~~~~~---------------------------------------------------~~~--~~~~~ 339 (386)
T COG4175 313 VDRGNKFVGVVSIDSLVKA---------------------------------------------------ALI--DDVLT 339 (386)
T ss_pred HhccCceeeEEeccchhcc---------------------------------------------------ccc--ccccc
Confidence 76 6779999987765431 111 46788
Q ss_pred eCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHH
Q 017600 157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (369)
Q Consensus 157 v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~ 200 (369)
+++++++.+.+..+.+.+. .++|+| +++++|+++...++ .++
T Consensus 340 v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl-~aL 382 (386)
T COG4175 340 VDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELL-EAL 382 (386)
T ss_pred cCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHH-HHH
Confidence 9999999999988887665 467777 99999999999998 444
No 210
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.24 E-value=1.2 Score=38.99 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=58.1
Q ss_pred CEEEEEcCCCcEEEEEeHHHHH--------HHHHhcc----CCCcccccccccccCCe----EEeCCCcHHHHHHHHHhC
Q 017600 7 DALLLTDSNALLCGILTDKDIA--------TRVIARE----LNLEETPVSKVMTRNPT----FVLSDTLAVEALQKMVQG 70 (369)
Q Consensus 7 ~~~~V~d~~~~~~Givt~~Di~--------~~~~~~~----~~~~~~~v~dim~~~~i----~v~~~~~l~~a~~~m~~~ 70 (369)
+.+.|.+ +|+++-.=|..+|+ +..+... ..++..++.+.|..... .+.....-.+++..+...
T Consensus 204 dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~ 282 (309)
T COG1125 204 DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR 282 (309)
T ss_pred ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc
Confidence 4567776 78888888865554 3333322 12334456666654321 223344556788888888
Q ss_pred CCeEeeEee-CCeEEEEEehHHHHH
Q 017600 71 KFRHLPVVE-NGEVIALLDIAKCLY 94 (369)
Q Consensus 71 ~~~~lpVvd-~~~~vGiv~~~dil~ 94 (369)
+...+||+| +|+++|.++..+++.
T Consensus 283 ~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 283 GRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred CCceeEEECCCCcEeeEEEHHHHhh
Confidence 999999999 799999999998864
No 211
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=88.57 E-value=0.72 Score=46.13 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=57.1
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHhCCCceeeEEcCC--CcEEEEEeHHHHHHHHHHHhcCCC
Q 017600 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVATVGNTA 273 (369)
Q Consensus 208 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Givt~~di~~~~~~~~~~~~ 273 (369)
...|+++|.+++.++..+++..|..+.+....++.+|+||.. --++|.|.+..+...+-.++..+.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~ 654 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP 654 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence 467899999999999999999999999988889999999864 359999999999988777776543
No 212
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=71.98 E-value=3.3 Score=40.47 Aligned_cols=125 Identities=20% Similarity=0.155 Sum_probs=80.6
Q ss_pred CCCccccccccccc--CCeEEeCCCcHH-HHHHHHHhCCCeEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHhhhhHH
Q 017600 36 LNLEETPVSKVMTR--NPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAI 110 (369)
Q Consensus 36 ~~~~~~~v~dim~~--~~i~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~vGiv~~~dil~~~~~~~~~~~~~~~~~ 110 (369)
..+....++++|++ .+..+..+..+. +......+++++++||.+. ...+|.+=....+....
T Consensus 199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~------------- 265 (498)
T KOG2118|consen 199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQ------------- 265 (498)
T ss_pred HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhc-------------
Confidence 34556778999984 566666777765 5555667899999999983 23333311111111100
Q ss_pred HHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCceEEEEeCCEEEEEe
Q 017600 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL 190 (369)
Q Consensus 111 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~V~d~~~~~Gii 190 (369)
....+...++...+. ..+..+++++++.+..+.+.+.+.+.+.|.....-.+++
T Consensus 266 ------------------------~~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~ 319 (498)
T KOG2118|consen 266 ------------------------VEVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVL 319 (498)
T ss_pred ------------------------cccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeE
Confidence 000122334455555 568888999999999999998888777777755667899
Q ss_pred ehHHHHHHHH
Q 017600 191 TSKDILMRVI 200 (369)
Q Consensus 191 t~~dll~~~~ 200 (369)
+..|+ ....
T Consensus 320 ~l~~~-~~~~ 328 (498)
T KOG2118|consen 320 TLEDL-EEVV 328 (498)
T ss_pred eccch-hhhc
Confidence 99987 4444
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=59.28 E-value=28 Score=35.45 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccc-ccc----------ccccCCceecCCCCHHH
Q 017600 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEK----------VMTPNPECATIDTPIVD 230 (369)
Q Consensus 163 l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~-v~~----------~m~~~~~~v~~~~~l~~ 230 (369)
+....+.+...+ ..++++| +|.++.+....+++..+...+... ... .++ +....++.|.......+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~-G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~ 138 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFND-GTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQ 138 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCcc-CCccchhccCcCHHHHHHhcCCceEEecHHHHHH
Confidence 344445555455 5777888 999999999888864433212211 111 111 11245566666555554
Q ss_pred HHHHHHhCCCceeeEEcCCCcEEEEEeH
Q 017600 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (369)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~g~~~Givt~ 258 (369)
. +....+..+||.|.+|+++|+++.
T Consensus 139 ~---~~~~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 139 A---LHNWAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred h---ccCceEEeeEEEcCCCCEEEEEEE
Confidence 4 344456779999999999999963
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=56.48 E-value=34 Score=23.96 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=21.9
Q ss_pred CcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCC
Q 017600 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~ 38 (369)
+.+.+-|+|++|..+|+++..+-++..-..+.++
T Consensus 11 ~~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDL 44 (76)
T PF05198_consen 11 RAPEVRLIDEDGEQLGVMSLREALRLAKEKGLDL 44 (76)
T ss_dssp --SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EE
T ss_pred CCCEEEEECCCCcEeceEEHHHHHHHHHHcCCcE
Confidence 3567888999999999999999875444443333
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=55.01 E-value=44 Score=31.61 Aligned_cols=143 Identities=16% Similarity=0.122 Sum_probs=77.6
Q ss_pred cEEEEEeHHHHHHHHHhccCCCcccccccccccCCeEEeCCCcHHHHHHHHHhCCCeEeeEee-CCeEEEEEehHHHHHH
Q 017600 17 LLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD 95 (369)
Q Consensus 17 ~~~Givt~~Di~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~vGiv~~~dil~~ 95 (369)
+=+|++|..-. ++-+. ..+ ..-.++|.-++..+.+-..+.+|+..|... .+..+| -|+ +..|-..
T Consensus 234 ~kVaiITtDtY--RIGA~-EQL--k~Ya~im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGr-----s~~D~~~- 299 (407)
T COG1419 234 KKVAIITTDTY--RIGAV-EQL--KTYADIMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGR-----SQYDKEK- 299 (407)
T ss_pred cceEEEEeccc--hhhHH-HHH--HHHHHHhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCC-----CccCHHH-
Confidence 34677776664 22210 111 134678887888887777888888888776 455567 565 2333221
Q ss_pred HHHHHHHHHhhhhHHHHHHHhHHHhcCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCC
Q 017600 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~ 175 (369)
++++.... .....+...+..+..........+.+.+..-++..++ +.-+++.+++...+..|.+++.
T Consensus 300 -i~el~~~~-------~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I-----~TKlDET~s~G~~~s~~~e~~~ 366 (407)
T COG1419 300 -IEELKELI-------DVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLI-----FTKLDETTSLGNLFSLMYETRL 366 (407)
T ss_pred -HHHHHHHH-------hccccceEEEEEecCcchHHHHHHHHHhccCCcceeE-----EEcccccCchhHHHHHHHHhCC
Confidence 11111111 1111112222222222333344444445444454444 3447888999999999999888
Q ss_pred ceEEEEeCCEE
Q 017600 176 SSAVVTVENKP 186 (369)
Q Consensus 176 ~~~~V~d~~~~ 186 (369)
+-..|.++.++
T Consensus 367 PV~YvT~GQ~V 377 (407)
T COG1419 367 PVSYVTNGQRV 377 (407)
T ss_pred CeEEEeCCCCC
Confidence 77777765443
No 216
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=54.62 E-value=28 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=19.1
Q ss_pred CceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 240 FLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 240 ~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
...+-|+|++|+.+|+++..+-++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4567889999999999999998874
No 217
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=46.19 E-value=37 Score=34.52 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=50.4
Q ss_pred CEEEEEcCCCcEEEEEeHHHHHHHHHhccCCCccccccccc----------ccCCeEEeCCCcHHHHHHHHHhCCCeEee
Q 017600 7 DALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVM----------TRNPTFVLSDTLAVEALQKMVQGKFRHLP 76 (369)
Q Consensus 7 ~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~~~~~v~dim----------~~~~i~v~~~~~l~~a~~~m~~~~~~~lp 76 (369)
..+++.|.+|.++.+....++.+.....+..+...-..+.+ ...++.+....-..+. +..-.....|
T Consensus 73 ~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~---~~~~~c~aaP 149 (638)
T PRK11388 73 CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA---LHNWAFCATP 149 (638)
T ss_pred cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh---ccCceEEeeE
Confidence 67899999999999999999875543322222111011111 2455566555544443 3344557889
Q ss_pred Eee-CCeEEEEEeh
Q 017600 77 VVE-NGEVIALLDI 89 (369)
Q Consensus 77 Vvd-~~~~vGiv~~ 89 (369)
|.| +|+++|+++.
T Consensus 150 I~d~~G~liGvl~l 163 (638)
T PRK11388 150 VFDSKGRLTGTIAL 163 (638)
T ss_pred EEcCCCCEEEEEEE
Confidence 998 7999999963
No 218
>PF14044 NETI: NETI protein
Probab=42.51 E-value=31 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=19.8
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeE
Q 017600 221 CATIDTPIVDALHIMHDGKFLHLPV 245 (369)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~V 245 (369)
.|.++.|+.+.++.|.+.|+ .||
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPV 25 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cce
Confidence 57889999999999999987 455
No 219
>CHL00199 infC translation initiation factor 3; Provisional
Probab=41.84 E-value=37 Score=28.24 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=26.5
Q ss_pred CcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCC
Q 017600 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~ 38 (369)
+.+.+-|+|++|..+|+++..+-++..-..+.++
T Consensus 23 ~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDL 56 (182)
T CHL00199 23 RFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDL 56 (182)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCE
Confidence 4577889999999999999999886555444444
No 220
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=38.25 E-value=33 Score=26.05 Aligned_cols=17 Identities=53% Similarity=0.827 Sum_probs=13.0
Q ss_pred eeeEEcCCCcEEEEEeH
Q 017600 242 HLPVVDRDGDVVDVVDV 258 (369)
Q Consensus 242 ~l~Vvd~~g~~~Givt~ 258 (369)
..||.|++|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 47999999999999964
No 221
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=35.75 E-value=47 Score=27.23 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.2
Q ss_pred CcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCC
Q 017600 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~ 38 (369)
+...+-|+|++|..+|+++..+-++..-..+.++
T Consensus 6 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDL 39 (165)
T TIGR00168 6 RFNEVRLIDENGEQLGIVSREEALEIAEEAGLDL 39 (165)
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHHHHcCCcE
Confidence 4677889999999999999999886554444443
No 222
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=33.54 E-value=1.3e+02 Score=22.51 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCC---HHHHHHHHH
Q 017600 161 DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP---IVDALHIMH 236 (369)
Q Consensus 161 ~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~---l~~a~~~~~ 236 (369)
.+..+|++...+.+-.-++.+. ++.. .-+.+.+..+. +..+.+.+..+.+.+..+.+ ..+....+.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~----~c~~~~~~vl~------~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~ 73 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEF----DSQVLNRDLWS------NESVKEFIRENFIFWQCDIDSSEGQRFLQSYK 73 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcc----hHHHHHHHHcC------CHHHHHHHHhCEEEEEecCCCccHHHHHHHhC
Confidence 4677888877766543333333 2221 11222111111 33455556555544444433 334444555
Q ss_pred hCCCceeeEEcC-CCcEE----EEEeHHHHHHHHH
Q 017600 237 DGKFLHLPVVDR-DGDVV----DVVDVIHITHAAV 266 (369)
Q Consensus 237 ~~~~~~l~Vvd~-~g~~~----Givt~~di~~~~~ 266 (369)
..+...+.++|. +|+++ |.++.++++..+-
T Consensus 74 ~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~ 108 (114)
T cd02958 74 VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLI 108 (114)
T ss_pred ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHH
Confidence 566777888898 78765 6667777776543
No 223
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=32.57 E-value=37 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=20.3
Q ss_pred CCCcEEEEEeHHHHHHHHHhc-cCCCc
Q 017600 14 SNALLCGILTDKDIATRVIAR-ELNLE 39 (369)
Q Consensus 14 ~~~~~~Givt~~Di~~~~~~~-~~~~~ 39 (369)
++|++.|=||..||+..+... +..++
T Consensus 24 ~~gklfGSVt~~dIa~~l~~~~g~~Id 50 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALKEQTGIEID 50 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHHHCCSSSSS
T ss_pred CCcceecCcCHHHHHHHHHHhhCCeEe
Confidence 578999999999999777665 44443
No 224
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.25 E-value=77 Score=31.08 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHcCCceEEEEeCCEEEEEeehHHHHH
Q 017600 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM 197 (369)
Q Consensus 162 ~l~~~~~~m~~~~~~~~~V~d~~~~~Giit~~dll~ 197 (369)
.++.+.+...+.|-.-++|++++++.|+|..+|+++
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK 449 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcc
Confidence 467777777888888899999999999999999984
No 225
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=29.37 E-value=1.3e+02 Score=29.67 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCeEeeEeeCCeEEEEEehHHHHHHHHH
Q 017600 60 AVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98 (369)
Q Consensus 60 l~~a~~~m~~~~~~~lpVvd~~~~vGiv~~~dil~~~~~ 98 (369)
+..+.+...+.+-.-++|++++++.|++..+|+++..+.
T Consensus 415 l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 415 LDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHH
Confidence 566666667777788899999999999999999887654
No 226
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=27.90 E-value=60 Score=26.36 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=15.2
Q ss_pred EeeEeeCCeEEEEEehHH
Q 017600 74 HLPVVENGEVIALLDIAK 91 (369)
Q Consensus 74 ~lpVvd~~~~vGiv~~~d 91 (369)
.+||+.+|+++|++++..
T Consensus 118 VvPi~~~g~~iGvlDiDS 135 (163)
T COG1956 118 VVPIFKDGKLIGVLDIDS 135 (163)
T ss_pred EEEEEECCEEEEEEecCC
Confidence 579999999999997643
No 227
>smart00594 UAS UAS domain.
Probab=26.70 E-value=1.4e+02 Score=22.83 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCCceecCCCCHHHHHHH---H
Q 017600 160 TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI---M 235 (369)
Q Consensus 160 ~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~---~ 235 (369)
..+..+|++...+.+-..++.+. +... .-+.+.+..+ .+..|.+++.++.+....+.+-.+..+. +
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~----~c~~~~r~vl------~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~ 82 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSP----DSQVFNRDVL------CNEAVKSLIRENFIFWQVDVDTSEGQRVSQFY 82 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCc----hHHHHHHHHc------cCHHHHHHHHcCEEEEEecCCChhHHHHHHhc
Confidence 34788888877765543343333 3221 1111211111 1345666666665554444444444444 4
Q ss_pred HhCCCceeeEEcCCC---------cEEEEEeHHHHHH
Q 017600 236 HDGKFLHLPVVDRDG---------DVVDVVDVIHITH 263 (369)
Q Consensus 236 ~~~~~~~l~Vvd~~g---------~~~Givt~~di~~ 263 (369)
.-.++..+.+++..| .+-|-++.++++.
T Consensus 83 ~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~ 119 (122)
T smart00594 83 KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMT 119 (122)
T ss_pred CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHH
Confidence 445667778888776 2334445555554
No 228
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=24.08 E-value=2.2e+02 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=21.9
Q ss_pred CcCEEEEEcCCCcEEEEEeHHHHHH
Q 017600 5 RVDALLLTDSNALLCGILTDKDIAT 29 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~Di~~ 29 (369)
+++.+-+++++|.-+|+++..|-+.
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~ 41 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALK 41 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHH
Confidence 5677889999999999999999874
No 229
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=24.03 E-value=1.4e+02 Score=24.79 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=23.6
Q ss_pred CcCEEEEEcCCCcEEEEEeHHHHHHHHHhccCCC
Q 017600 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 5 ~~~~~~V~d~~~~~~Givt~~Di~~~~~~~~~~~ 38 (369)
+...+-|+|++|..+|+++..+.++..-..+.++
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDL 51 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELAEEAGLDL 51 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCE
Confidence 3566778888888888888888875444444333
No 230
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.07 E-value=90 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=13.0
Q ss_pred EEEEEcCCCcEEEEEe
Q 017600 8 ALLLTDSNALLCGILT 23 (369)
Q Consensus 8 ~~~V~d~~~~~~Givt 23 (369)
+.||.+++|+++|++.
T Consensus 18 s~pi~~~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVG 33 (81)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 5788888889888865
No 231
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=22.61 E-value=58 Score=24.17 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=16.1
Q ss_pred hCCCceeeEEcCCCcEEEE
Q 017600 237 DGKFLHLPVVDRDGDVVDV 255 (369)
Q Consensus 237 ~~~~~~l~Vvd~~g~~~Gi 255 (369)
..+...-||+|.+|+++||
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3567778999999999997
No 232
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=22.33 E-value=90 Score=25.05 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=20.7
Q ss_pred CCCcEEEEEeHHHHHHHHHhccCCCc
Q 017600 14 SNALLCGILTDKDIATRVIARELNLE 39 (369)
Q Consensus 14 ~~~~~~Givt~~Di~~~~~~~~~~~~ 39 (369)
++|++.|-+|.+||+..+-..+.++.
T Consensus 85 ~~GklfGSVt~~dIa~~l~~~g~~id 110 (148)
T COG0359 85 EDGKLFGSVTSKDIAEALKAAGFKLD 110 (148)
T ss_pred CCCceeccccHHHHHHHHHHcCCCcc
Confidence 56999999999999977766655553
No 233
>PRK10026 arsenate reductase; Provisional
Probab=22.05 E-value=4.1e+02 Score=21.12 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=56.5
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCceEEEEe-CCEEEEEeehHHHHHHHHhcCCCccccccccccccCC------ceecCCC
Q 017600 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP------ECATIDT 226 (369)
Q Consensus 154 ~~~v~~~~~l~~~~~~m~~~~~~~~~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~------~~v~~~~ 226 (369)
+...+.-.+...|.+.+.++++..-.+ + -. -=.|..+|. .++.... ....+++++.- -.-..+.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~~~-d~~~---~ppt~~eL~-~~l~~~g----~~~~~lint~~~~yr~L~~~~~~l 76 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPTII-HYLE---TPPTRDELV-KLIADMG----ISVRALLRKNVEPYEELGLAEDKF 76 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEE-eeeC---CCcCHHHHH-HHHHhCC----CCHHHHHHcCCchHHHcCCCccCC
Confidence 666777788999999999988765333 3 11 126777774 6655321 12333333211 0001457
Q ss_pred CHHHHHHHHHhCC--CceeeEEcCCCcEEEE
Q 017600 227 PIVDALHIMHDGK--FLHLPVVDRDGDVVDV 255 (369)
Q Consensus 227 ~l~~a~~~~~~~~--~~~l~Vvd~~g~~~Gi 255 (369)
+..++++.|.+++ +++=+|++++|.++|-
T Consensus 77 s~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R 107 (141)
T PRK10026 77 TDDQLIDFMLQHPILINRPIVVTPLGTRLCR 107 (141)
T ss_pred CHHHHHHHHHhCccceeCcEEEcCCCeEEEC
Confidence 8899999999987 3343456667767665
No 234
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=21.63 E-value=3.8e+02 Score=22.85 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=32.9
Q ss_pred CceEEEEe---CC--EEEEEeehHHHHHHHHhcCCCccccccccccccC-CceecCCCCHHHHHHHH
Q 017600 175 LSSAVVTV---EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTPN-PECATIDTPIVDALHIM 235 (369)
Q Consensus 175 ~~~~~V~d---~~--~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~-~~~v~~~~~l~~a~~~~ 235 (369)
+..++|.+ ++ .+.|++|.+|++ +.+.........-+-++|-+. --..-.+.++.++.+.+
T Consensus 127 v~V~~V~N~fFG~~ItVaGLLTg~Dii-~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~~~l 192 (204)
T PF04459_consen 127 VEVVPVKNRFFGGTITVAGLLTGQDII-EQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELEERL 192 (204)
T ss_pred EEEEEeecCCCCCCeEEeeCccHHHHH-HHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHHHHh
Confidence 45556655 33 378999999998 444332211122233444332 22233478888877765
No 235
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=21.58 E-value=78 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred CceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 240 FLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 240 ~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
...+-|+|++|..+|+++..+.++..
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A 44 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELA 44 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHH
Confidence 45678999999999999999988754
No 236
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.30 E-value=4.5e+02 Score=25.12 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCEEEEEeehHHHHHHHHhcCCCcccccccc-ccccCCceecCCCCHHHHHHHHHhCCCceeeEE-----cCCCcEEEEE
Q 017600 183 ENKPRGILTSKDILMRVISQNLPADSTLVEK-VMTPNPECATIDTPIVDALHIMHDGKFLHLPVV-----DRDGDVVDVV 256 (369)
Q Consensus 183 ~~~~~Giit~~dll~~~~~~~~~~~~~~v~~-~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv-----d~~g~~~Giv 256 (369)
.+++.|++|.+||+ .+-.. .+.+ ++.+. -..-.+.++.++.+.+ +....+|- ..+|+..|..
T Consensus 312 ~n~VagLlTg~Di~-~l~~~-------~~~d~~liP~-~~fldd~t~~~~~~~l---~~~v~v~~~~~~~~~~~~~~~~~ 379 (404)
T TIGR03278 312 KKDIACLITEDDLE-ELDLS-------EVKETVIIPG-RAFVHDMVAEEILKRD---GVDRIVVRGPDRLTADGEMSGGM 379 (404)
T ss_pred cCcccccchHHHHH-HhcCC-------CCCCEEEecC-ccccccccHHHHHHHh---CCcEEEecCCceeeecceecccc
Confidence 34499999999997 44321 1112 22233 3444677888877766 55545442 2368999999
Q ss_pred eHHHHHHH
Q 017600 257 DVIHITHA 264 (369)
Q Consensus 257 t~~di~~~ 264 (369)
|.+++++.
T Consensus 380 ~~~~~~~~ 387 (404)
T TIGR03278 380 TREEVLEF 387 (404)
T ss_pred cHHHHHHH
Confidence 99999874
No 237
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=20.31 E-value=77 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.1
Q ss_pred CceeeEEcCCCcEEEEEeHHHHHHHH
Q 017600 240 FLHLPVVDRDGDVVDVVDVIHITHAA 265 (369)
Q Consensus 240 ~~~l~Vvd~~g~~~Givt~~di~~~~ 265 (369)
.+.+-|+|++|...|+++..+.++-.
T Consensus 7 ~~~Vrli~~dG~~lgv~~~~eAl~~A 32 (165)
T TIGR00168 7 FNEVRLIDENGEQLGIVSREEALEIA 32 (165)
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHH
Confidence 45678999999999999999988754
No 238
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=20.13 E-value=60 Score=21.97 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.9
Q ss_pred ceeEEEEcCCCceEEeecCCCCh
Q 017600 334 AFAFKVQDNKGLMHRFTCGMLPF 356 (369)
Q Consensus 334 ~~~~~v~~~~g~~~~~~~g~~~~ 356 (369)
.+..+|++.+|++ +|.++|
T Consensus 45 ~WrV~V~~~~G~~----l~~~~F 63 (66)
T PF11141_consen 45 DWRVEVVDEDGQV----LGSLRF 63 (66)
T ss_pred CEEEEEEcCCCCE----EEEEEE
Confidence 4789999999999 777665
No 239
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=20.12 E-value=1.3e+02 Score=24.14 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=19.4
Q ss_pred cCCCcEEEEEeHHHHHHHHHhccCCC
Q 017600 13 DSNALLCGILTDKDIATRVIARELNL 38 (369)
Q Consensus 13 d~~~~~~Givt~~Di~~~~~~~~~~~ 38 (369)
.++|++.|-||..||+..+...+..+
T Consensus 84 ge~gklfGSVt~~~I~~~l~~~g~~i 109 (148)
T TIGR00158 84 GDEGKLFGSITTKQIADALKAAGLDL 109 (148)
T ss_pred CCCCeEEEeECHHHHHHHHHHcCCcc
Confidence 35789999999999986664444444
No 240
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=1.4e+02 Score=24.58 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCceeeEEcCCCcEEEEEeHHHHHHH
Q 017600 239 KFLHLPVVDRDGDVVDVVDVIHITHA 264 (369)
Q Consensus 239 ~~~~l~Vvd~~g~~~Givt~~di~~~ 264 (369)
+.+.+-++|++|.-+|+++..+-++-
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~l 42 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKL 42 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHH
Confidence 45567899999999999999998864
Done!