BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>017601
MVVLEAKSLRKAEVPLSLIENPSPGNIQCTRLALHVNEDGCSCFVYIASGCHLYKLQVMM
DDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHL
IVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD
IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV
GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY
VQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE
ISALKGLVN

High Scoring Gene Products

Symbol, full name Information P value
PFA0520c
chromatin assembly factor 1 protein WD40 domain, putative
gene from Plasmodium falciparum 0.00015
PFA_0520c
Chromatin assembly factor 1 protein WD40 domain, putative
protein from Plasmodium falciparum 3D7 0.00015

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017601
        (369 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

GENEDB_PFALCIPARUM|PFA0520c - symbol:PFA0520c "chromatin ...   122  0.00015   1
UNIPROTKB|Q8I238 - symbol:PFA_0520c "Chromatin assembly f...   122  0.00015   1


>GENEDB_PFALCIPARUM|PFA0520c [details] [associations]
            symbol:PFA0520c "chromatin assembly factor 1
            protein WD40 domain, putative" species:5833 "Plasmodium falciparum"
            [GO:0051082 "unfolded protein binding" evidence=ISS] [GO:0042393
            "histone binding" evidence=ISS] [GO:0006334 "nucleosome assembly"
            evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
            InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
            SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0051082
            GO:GO:0042393 GO:GO:0006334 GO:GO:0005678 KO:K10752
            InterPro:IPR022052 Pfam:PF12265 EMBL:AL844501 OMA:VLYDLVI
            RefSeq:XP_001351036.1 ProteinModelPortal:Q8I238 PRIDE:Q8I238
            EnsemblProtists:PFA0520c:mRNA GeneID:813241 KEGG:pfa:PFA_0520c
            HOGENOM:HOG000283790 ProtClustDB:CLSZ2433094 Uniprot:Q8I238
        Length = 446

 Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
 Identities = 50/217 (23%), Positives = 98/217 (45%)

Query:    87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV 146
             ++  H  EV  I     +   ++V  +VD   HL     D +   ++ +   + P+   V
Sbjct:   147 SKIAHTGEVNRIKFVPLEKKNFVVTKAVDGNVHLF----DINKHKIETVDDKMNPEVSFV 202

Query:   147 GEGSWS-GLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPV 204
             G  S   GL F P +  +   A      I+VYD + ++ +T++  +     + V ++SP 
Sbjct:   203 GNQSDGFGLDFQPIKKYILTCAND--GLINVYDYNTLNTKTVQPFYKVQYKSPVNDISPT 260

Query:   205 NGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADR- 262
             N  PN+ LA  +   + I+D R+K N      + G    +     ++ TG  A +G+D  
Sbjct:   261 ND-PNLILACADNGYILIFDFRIKSNEPAQQTL-GQQVPVNTVALNTFTGLFA-SGSDNG 317

Query:   263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299
              + ++D +++      ++  K  I  L+FS  D++ +
Sbjct:   318 KIKVWDLKKFHEPQHIINAHKEAIIRLNFSPNDASIL 354


>UNIPROTKB|Q8I238 [details] [associations]
            symbol:PFA_0520c "Chromatin assembly factor 1 protein WD40
            domain, putative" species:36329 "Plasmodium falciparum 3D7"
            [GO:0006334 "nucleosome assembly" evidence=ISS] [GO:0042393
            "histone binding" evidence=ISS] [GO:0051082 "unfolded protein
            binding" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
            InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
            SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0051082
            GO:GO:0042393 GO:GO:0006334 GO:GO:0005678 KO:K10752
            InterPro:IPR022052 Pfam:PF12265 EMBL:AL844501 OMA:VLYDLVI
            RefSeq:XP_001351036.1 ProteinModelPortal:Q8I238 PRIDE:Q8I238
            EnsemblProtists:PFA0520c:mRNA GeneID:813241 KEGG:pfa:PFA_0520c
            HOGENOM:HOG000283790 ProtClustDB:CLSZ2433094 Uniprot:Q8I238
        Length = 446

 Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
 Identities = 50/217 (23%), Positives = 98/217 (45%)

Query:    87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV 146
             ++  H  EV  I     +   ++V  +VD   HL     D +   ++ +   + P+   V
Sbjct:   147 SKIAHTGEVNRIKFVPLEKKNFVVTKAVDGNVHLF----DINKHKIETVDDKMNPEVSFV 202

Query:   147 GEGSWS-GLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPV 204
             G  S   GL F P +  +   A      I+VYD + ++ +T++  +     + V ++SP 
Sbjct:   203 GNQSDGFGLDFQPIKKYILTCAND--GLINVYDYNTLNTKTVQPFYKVQYKSPVNDISPT 260

Query:   205 NGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADR- 262
             N  PN+ LA  +   + I+D R+K N      + G    +     ++ TG  A +G+D  
Sbjct:   261 ND-PNLILACADNGYILIFDFRIKSNEPAQQTL-GQQVPVNTVALNTFTGLFA-SGSDNG 317

Query:   263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299
              + ++D +++      ++  K  I  L+FS  D++ +
Sbjct:   318 KIKVWDLKKFHEPQHIINAHKEAIIRLNFSPNDASIL 354


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      369       369   0.00085  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  278 KB (2144 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.12u 0.14s 29.26t   Elapsed:  00:00:01
  Total cpu time:  29.12u 0.14s 29.26t   Elapsed:  00:00:01
  Start:  Mon May 20 19:41:28 2013   End:  Mon May 20 19:41:29 2013

Back to top